Query 003388
Match_columns 824
No_of_seqs 415 out of 2511
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 6.4E-85 2.2E-89 779.6 47.9 570 60-755 3-637 (646)
2 2gk6_A Regulator of nonsense t 100.0 4.5E-75 1.6E-79 690.8 47.8 577 53-755 1-611 (624)
3 2wjy_A Regulator of nonsense t 100.0 2.1E-73 7.3E-78 687.8 50.9 583 48-756 172-788 (800)
4 2xzl_A ATP-dependent helicase 100.0 2.1E-73 7.3E-78 688.8 48.5 583 48-755 174-789 (802)
5 3e1s_A Exodeoxyribonuclease V, 100.0 5.9E-29 2E-33 290.9 14.3 290 254-733 187-544 (574)
6 3lfu_A DNA helicase II; SF1 he 99.9 4.8E-27 1.6E-31 280.6 20.5 150 482-661 212-365 (647)
7 3upu_A ATP-dependent DNA helic 99.9 5.7E-26 1.9E-30 260.2 15.3 183 255-571 24-212 (459)
8 1w36_D RECD, exodeoxyribonucle 99.9 6.6E-25 2.2E-29 259.1 16.3 342 258-731 151-584 (608)
9 1pjr_A PCRA; DNA repair, DNA r 99.9 2.6E-25 8.8E-30 268.3 11.0 154 481-663 214-371 (724)
10 1uaa_A REP helicase, protein ( 99.9 1.4E-23 4.9E-28 251.6 24.6 143 480-652 204-351 (673)
11 3vkw_A Replicase large subunit 99.9 1.2E-21 4E-26 218.7 17.4 200 483-749 234-436 (446)
12 3u4q_A ATP-dependent helicase/ 99.7 2.3E-18 7.9E-23 218.5 10.4 84 482-572 399-494 (1232)
13 1w36_B RECB, exodeoxyribonucle 99.6 1.7E-15 5.7E-20 191.8 13.9 169 483-663 377-571 (1180)
14 3dmn_A Putative DNA helicase; 99.4 6E-13 2.1E-17 131.7 9.6 144 553-730 2-154 (174)
15 3u4q_B ATP-dependent helicase/ 98.8 2.2E-08 7.6E-13 126.9 16.4 152 485-664 203-364 (1166)
16 2gxq_A Heat resistant RNA depe 98.6 2.4E-07 8.3E-12 93.1 13.3 37 255-292 22-58 (207)
17 2fz4_A DNA repair protein RAD2 98.6 3E-07 1E-11 95.2 14.3 38 255-293 92-129 (237)
18 1vec_A ATP-dependent RNA helic 98.5 1.1E-06 3.6E-11 88.3 14.3 35 255-290 24-58 (206)
19 1qde_A EIF4A, translation init 98.5 5.9E-07 2E-11 91.6 12.2 35 255-290 35-69 (224)
20 3b6e_A Interferon-induced heli 98.5 2.4E-07 8.2E-12 93.5 8.7 42 256-298 33-74 (216)
21 1hv8_A Putative ATP-dependent 98.5 9E-07 3.1E-11 96.6 13.6 42 255-296 27-68 (367)
22 1t6n_A Probable ATP-dependent 98.5 2E-06 6.7E-11 87.5 14.8 37 256-293 36-72 (220)
23 3ber_A Probable ATP-dependent 98.4 2.2E-06 7.4E-11 89.3 14.4 38 255-293 64-101 (249)
24 3bor_A Human initiation factor 98.4 1.2E-06 4E-11 90.5 12.2 36 255-291 51-86 (237)
25 3iuy_A Probable ATP-dependent 98.4 1.8E-06 6.2E-11 88.3 13.1 36 255-291 41-76 (228)
26 2pl3_A Probable ATP-dependent 98.4 2.9E-06 9.8E-11 87.3 14.6 38 255-293 46-83 (236)
27 2oxc_A Probable ATP-dependent 98.4 1.8E-06 6.3E-11 88.5 12.1 34 256-290 46-79 (230)
28 3ly5_A ATP-dependent RNA helic 98.3 3.2E-06 1.1E-10 88.7 13.7 36 255-291 75-110 (262)
29 3fe2_A Probable ATP-dependent 98.3 5E-06 1.7E-10 85.9 15.0 47 244-291 35-85 (242)
30 3oiy_A Reverse gyrase helicase 98.3 2.1E-06 7.3E-11 96.0 13.0 36 253-289 18-53 (414)
31 1rif_A DAR protein, DNA helica 98.3 2E-06 7E-11 91.1 11.6 41 256-297 113-153 (282)
32 1s2m_A Putative ATP-dependent 98.3 3.3E-06 1.1E-10 93.7 13.8 37 256-293 43-79 (400)
33 1wrb_A DJVLGB; RNA helicase, D 98.3 5.4E-06 1.9E-10 86.2 14.4 38 255-293 44-81 (253)
34 1q0u_A Bstdead; DEAD protein, 98.3 7.1E-07 2.4E-11 90.8 7.3 36 255-291 25-60 (219)
35 2z0m_A 337AA long hypothetical 98.3 4.6E-06 1.6E-10 89.9 13.6 36 255-291 15-50 (337)
36 3pey_A ATP-dependent RNA helic 98.3 5.6E-06 1.9E-10 91.2 14.3 39 255-293 26-65 (395)
37 1xti_A Probable ATP-dependent 98.2 7.1E-06 2.4E-10 90.5 14.2 38 255-293 29-66 (391)
38 2fwr_A DNA repair protein RAD2 98.2 6E-06 2.1E-10 94.0 13.4 38 255-293 92-129 (472)
39 3dkp_A Probable ATP-dependent 98.2 5.4E-06 1.8E-10 85.7 11.5 36 255-291 50-85 (245)
40 2j0s_A ATP-dependent RNA helic 98.2 7.9E-06 2.7E-10 91.0 13.6 38 255-293 58-95 (410)
41 3eiq_A Eukaryotic initiation f 98.2 7.6E-06 2.6E-10 91.0 13.3 38 255-293 61-98 (414)
42 1wp9_A ATP-dependent RNA helic 98.2 8.5E-06 2.9E-10 91.9 13.7 128 256-497 9-139 (494)
43 3h1t_A Type I site-specific re 98.1 8.1E-06 2.8E-10 95.9 12.3 43 256-298 178-224 (590)
44 2va8_A SSO2462, SKI2-type heli 98.1 1E-05 3.5E-10 97.3 13.3 50 244-293 14-67 (715)
45 2i4i_A ATP-dependent RNA helic 98.1 2.6E-05 9E-10 86.8 14.8 52 245-297 22-78 (417)
46 2oca_A DAR protein, ATP-depend 98.1 9.5E-06 3.2E-10 93.4 11.4 42 255-297 112-153 (510)
47 4a2p_A RIG-I, retinoic acid in 98.1 1.5E-05 5E-10 92.4 12.9 42 256-298 7-48 (556)
48 1fuu_A Yeast initiation factor 98.1 1.1E-05 3.6E-10 89.1 11.1 36 255-291 42-77 (394)
49 2zj8_A DNA helicase, putative 98.1 1E-05 3.4E-10 97.5 11.5 46 245-290 8-57 (720)
50 3fht_A ATP-dependent RNA helic 98.1 1.9E-05 6.4E-10 87.6 12.5 37 255-291 46-83 (412)
51 3tbk_A RIG-I helicase domain; 98.0 1.5E-05 5.2E-10 92.1 12.1 42 256-298 4-45 (555)
52 2zpa_A Uncharacterized protein 98.0 6.6E-06 2.3E-10 96.2 8.2 77 483-571 255-335 (671)
53 3fho_A ATP-dependent RNA helic 98.0 5.6E-06 1.9E-10 95.4 7.6 38 256-293 141-179 (508)
54 3llm_A ATP-dependent RNA helic 97.9 3.3E-05 1.1E-09 79.5 10.9 38 256-294 61-98 (235)
55 2db3_A ATP-dependent RNA helic 97.9 0.0001 3.5E-09 83.1 15.3 52 245-297 63-119 (434)
56 4a2q_A RIG-I, retinoic acid in 97.9 4.4E-05 1.5E-09 92.9 13.1 43 255-298 247-289 (797)
57 4ddu_A Reverse gyrase; topoiso 97.9 6.4E-05 2.2E-09 94.1 14.5 37 255-292 77-113 (1104)
58 3fmo_B ATP-dependent RNA helic 97.9 4.9E-05 1.7E-09 81.4 11.4 35 255-289 113-148 (300)
59 1gm5_A RECG; helicase, replica 97.9 9.1E-05 3.1E-09 89.2 14.3 43 253-295 365-412 (780)
60 3i5x_A ATP-dependent RNA helic 97.8 8.6E-05 2.9E-09 86.4 12.9 38 255-292 93-131 (563)
61 3sqw_A ATP-dependent RNA helic 97.8 5.7E-05 2E-09 88.4 11.1 38 255-292 42-80 (579)
62 2ykg_A Probable ATP-dependent 97.8 0.00015 5.1E-09 86.6 14.3 42 255-297 12-53 (696)
63 4gl2_A Interferon-induced heli 97.7 1.9E-05 6.3E-10 94.6 5.5 42 256-298 7-48 (699)
64 4a4z_A Antiviral helicase SKI2 97.7 0.00019 6.7E-09 88.9 14.7 40 255-295 38-77 (997)
65 3l9o_A ATP-dependent RNA helic 97.7 0.0002 6.9E-09 89.7 14.7 40 254-294 182-221 (1108)
66 2p6r_A Afuhel308 helicase; pro 97.7 5.2E-05 1.8E-09 90.9 9.1 36 256-292 25-60 (702)
67 2v1x_A ATP-dependent DNA helic 97.7 0.0001 3.5E-09 86.4 11.2 33 255-288 43-75 (591)
68 4a2w_A RIG-I, retinoic acid in 97.7 8.1E-05 2.8E-09 92.0 10.4 38 255-293 247-284 (936)
69 3fmp_B ATP-dependent RNA helic 97.7 0.00011 3.8E-09 83.7 10.6 36 255-290 113-149 (479)
70 2eyq_A TRCF, transcription-rep 97.6 0.00035 1.2E-08 88.0 15.5 40 253-292 600-644 (1151)
71 3dmq_A RNA polymerase-associat 97.6 0.00015 5E-09 90.0 11.9 44 255-298 152-196 (968)
72 3crv_A XPD/RAD3 related DNA he 97.6 0.00049 1.7E-08 80.0 15.1 42 456-497 143-187 (551)
73 2xgj_A ATP-dependent RNA helic 97.6 0.0003 1E-08 87.3 13.0 38 255-293 85-122 (1010)
74 2vl7_A XPD; helicase, unknown 97.6 0.00014 4.9E-09 84.3 9.4 105 624-750 370-482 (540)
75 1oyw_A RECQ helicase, ATP-depe 97.5 0.0002 7E-09 82.7 10.5 33 255-288 24-56 (523)
76 1z63_A Helicase of the SNF2/RA 97.5 0.00045 1.5E-08 79.0 12.7 45 253-297 34-81 (500)
77 4f92_B U5 small nuclear ribonu 97.4 0.00076 2.6E-08 87.8 14.4 37 255-291 925-961 (1724)
78 2w00_A HSDR, R.ECOR124I; ATP-b 97.4 0.00045 1.5E-08 85.5 11.6 38 256-293 271-321 (1038)
79 3mwy_W Chromo domain-containin 97.4 0.0008 2.7E-08 81.8 13.2 44 255-298 235-281 (800)
80 1gku_B Reverse gyrase, TOP-RG; 97.3 0.00049 1.7E-08 86.0 10.8 33 256-290 57-89 (1054)
81 1z3i_X Similar to RAD54-like; 97.3 0.0014 4.9E-08 77.5 13.7 46 253-298 52-105 (644)
82 2xau_A PRE-mRNA-splicing facto 97.2 0.00059 2E-08 82.4 9.7 35 258-292 95-129 (773)
83 2jlq_A Serine protease subunit 97.2 0.00049 1.7E-08 77.9 8.1 34 264-297 11-45 (451)
84 2z83_A Helicase/nucleoside tri 97.2 0.00044 1.5E-08 78.5 7.4 50 643-693 190-242 (459)
85 3o8b_A HCV NS3 protease/helica 97.0 0.00079 2.7E-08 79.2 7.4 22 374-395 258-279 (666)
86 2j9r_A Thymidine kinase; TK1, 97.0 0.0019 6.6E-08 65.0 8.9 25 273-297 29-53 (214)
87 1xx6_A Thymidine kinase; NESG, 96.9 0.0023 7.8E-08 63.6 9.2 25 273-297 9-33 (191)
88 3ec2_A DNA replication protein 96.9 0.00067 2.3E-08 66.3 5.2 40 258-297 16-63 (180)
89 2l8b_A Protein TRAI, DNA helic 96.9 0.0029 1E-07 61.6 9.3 55 484-551 122-179 (189)
90 3rc3_A ATP-dependent RNA helic 96.7 0.0049 1.7E-07 73.0 11.0 23 376-398 182-204 (677)
91 4f92_B U5 small nuclear ribonu 96.7 0.0068 2.3E-07 79.0 12.8 36 255-290 78-113 (1724)
92 3kl4_A SRP54, signal recogniti 96.6 0.0085 2.9E-07 67.0 11.4 26 272-297 97-122 (433)
93 1jbk_A CLPB protein; beta barr 96.5 0.0025 8.6E-08 61.8 5.7 40 259-298 28-69 (195)
94 3te6_A Regulatory protein SIR3 96.5 0.0012 4.2E-08 70.9 3.6 40 259-298 26-71 (318)
95 1g5t_A COB(I)alamin adenosyltr 96.5 0.024 8.2E-07 56.2 12.7 33 265-297 21-53 (196)
96 2wv9_A Flavivirin protease NS2 96.5 0.0063 2.2E-07 72.1 10.0 34 263-296 227-266 (673)
97 1tue_A Replication protein E1; 96.5 0.0016 5.5E-08 65.1 4.1 23 274-296 60-82 (212)
98 3n70_A Transport activator; si 96.4 0.0023 8E-08 60.3 4.4 23 270-292 22-44 (145)
99 3bos_A Putative DNA replicatio 96.4 0.0034 1.1E-07 63.6 5.8 42 256-297 34-77 (242)
100 2whx_A Serine protease/ntpase/ 96.4 0.0083 2.8E-07 70.5 9.9 21 374-394 216-236 (618)
101 2p65_A Hypothetical protein PF 96.3 0.0032 1.1E-07 60.9 4.8 39 259-297 28-68 (187)
102 2chg_A Replication factor C sm 96.1 0.0047 1.6E-07 61.3 5.5 40 258-297 22-63 (226)
103 3h4m_A Proteasome-activating n 96.1 0.0043 1.5E-07 65.1 5.4 25 271-295 50-74 (285)
104 2orv_A Thymidine kinase; TP4A 96.1 0.015 5E-07 59.2 8.7 24 273-296 20-43 (234)
105 3co5_A Putative two-component 96.1 0.0023 7.7E-08 60.3 2.5 21 271-291 26-46 (143)
106 1njg_A DNA polymerase III subu 96.0 0.0048 1.7E-07 62.0 5.1 40 258-297 28-70 (250)
107 2w58_A DNAI, primosome compone 95.9 0.0057 1.9E-07 60.7 4.9 25 273-297 55-79 (202)
108 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0073 2.5E-07 62.3 5.9 24 272-295 39-62 (262)
109 1ofh_A ATP-dependent HSL prote 95.9 0.0052 1.8E-07 65.1 4.9 25 272-296 50-74 (310)
110 1sxj_C Activator 1 40 kDa subu 95.9 0.0064 2.2E-07 65.8 5.4 40 258-297 30-71 (340)
111 1w4r_A Thymidine kinase; type 95.9 0.012 4E-07 58.4 6.7 25 273-297 21-45 (195)
112 3e2i_A Thymidine kinase; Zn-bi 95.9 0.017 5.9E-07 58.0 8.0 25 272-296 28-52 (219)
113 2kjq_A DNAA-related protein; s 95.7 0.0055 1.9E-07 58.2 3.6 40 256-297 22-61 (149)
114 3b9p_A CG5977-PA, isoform A; A 95.7 0.0087 3E-07 63.2 5.3 24 272-295 54-77 (297)
115 1sxj_D Activator 1 41 kDa subu 95.7 0.0061 2.1E-07 65.9 4.2 38 260-297 44-83 (353)
116 3t15_A Ribulose bisphosphate c 95.6 0.0064 2.2E-07 64.5 3.9 25 272-296 36-60 (293)
117 2v1u_A Cell division control p 95.6 0.0094 3.2E-07 65.0 5.1 40 258-297 24-69 (387)
118 1l8q_A Chromosomal replication 95.5 0.01 3.5E-07 63.6 5.3 25 273-297 38-62 (324)
119 2r44_A Uncharacterized protein 95.5 0.0055 1.9E-07 66.0 3.1 35 260-294 34-68 (331)
120 3eie_A Vacuolar protein sortin 95.5 0.013 4.4E-07 62.9 5.9 23 273-295 52-74 (322)
121 4b4t_M 26S protease regulatory 95.4 0.0069 2.4E-07 67.7 3.5 24 273-296 216-239 (434)
122 3cf0_A Transitional endoplasmi 95.4 0.012 4.2E-07 62.5 5.3 24 271-294 48-71 (301)
123 2qby_B CDC6 homolog 3, cell di 95.4 0.01 3.4E-07 65.0 4.7 26 272-297 45-70 (384)
124 2dr3_A UPF0273 protein PH0284; 95.4 0.018 6.2E-07 58.6 6.3 31 267-297 18-48 (247)
125 4b4t_K 26S protease regulatory 95.3 0.0077 2.6E-07 67.3 3.5 23 274-296 208-230 (428)
126 1in4_A RUVB, holliday junction 95.3 0.0098 3.4E-07 64.3 4.2 24 273-296 52-75 (334)
127 2bjv_A PSP operon transcriptio 95.3 0.011 3.8E-07 61.3 4.4 25 269-293 26-50 (265)
128 4b4t_J 26S protease regulatory 95.3 0.0085 2.9E-07 66.1 3.5 23 274-296 184-206 (405)
129 4fcw_A Chaperone protein CLPB; 95.3 0.0094 3.2E-07 63.2 3.8 24 273-296 48-71 (311)
130 1iqp_A RFCS; clamp loader, ext 95.2 0.014 4.8E-07 62.1 5.1 39 259-297 31-71 (327)
131 4b4t_L 26S protease subunit RP 95.2 0.0089 3E-07 66.9 3.5 24 273-296 216-239 (437)
132 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.015 5.3E-07 62.4 5.3 23 273-295 46-68 (322)
133 1u0j_A DNA replication protein 95.2 0.019 6.4E-07 59.8 5.6 46 250-295 76-127 (267)
134 2chq_A Replication factor C sm 95.2 0.017 5.7E-07 61.2 5.5 40 258-297 22-63 (319)
135 3uk6_A RUVB-like 2; hexameric 95.2 0.013 4.6E-07 63.7 4.7 24 273-296 71-94 (368)
136 2r62_A Cell division protease 95.1 0.0065 2.2E-07 63.2 2.0 22 274-295 46-67 (268)
137 3hws_A ATP-dependent CLP prote 95.1 0.015 5.2E-07 63.5 4.8 23 272-294 51-73 (363)
138 1lv7_A FTSH; alpha/beta domain 95.1 0.015 5.1E-07 60.0 4.5 23 273-295 46-68 (257)
139 2qby_A CDC6 homolog 1, cell di 95.1 0.016 5.5E-07 63.0 5.0 39 259-297 26-70 (386)
140 3cpe_A Terminase, DNA packagin 95.0 0.17 5.7E-06 59.1 13.9 41 256-297 163-203 (592)
141 3syl_A Protein CBBX; photosynt 95.0 0.012 4E-07 62.5 3.8 25 273-297 68-92 (309)
142 2qp9_X Vacuolar protein sortin 95.0 0.017 5.9E-07 63.0 5.1 24 273-296 85-108 (355)
143 2qgz_A Helicase loader, putati 95.0 0.016 5.4E-07 62.0 4.6 26 272-297 152-177 (308)
144 4b4t_I 26S protease regulatory 94.9 0.012 4.1E-07 65.2 3.6 24 273-296 217-240 (437)
145 2orw_A Thymidine kinase; TMTK, 94.9 0.024 8.2E-07 55.7 5.4 25 273-297 4-28 (184)
146 1hqc_A RUVB; extended AAA-ATPa 94.8 0.02 7E-07 61.0 4.8 24 272-295 38-61 (324)
147 1d2n_A N-ethylmaleimide-sensit 94.8 0.015 5E-07 60.7 3.5 24 272-295 64-87 (272)
148 4b4t_H 26S protease regulatory 94.7 0.013 4.5E-07 65.6 3.1 25 272-296 243-267 (467)
149 2b8t_A Thymidine kinase; deoxy 94.7 0.023 8E-07 57.7 4.7 27 271-297 11-37 (223)
150 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.016 5.5E-07 66.1 3.9 32 261-292 30-61 (500)
151 3d8b_A Fidgetin-like protein 1 94.7 0.02 6.9E-07 62.4 4.6 24 272-295 117-140 (357)
152 1jr3_A DNA polymerase III subu 94.7 0.022 7.6E-07 61.9 4.9 38 259-296 22-62 (373)
153 3pfi_A Holliday junction ATP-d 94.7 0.016 5.5E-07 62.4 3.7 21 273-293 56-76 (338)
154 1fnn_A CDC6P, cell division co 94.7 0.018 6.3E-07 62.8 4.1 23 274-296 46-68 (389)
155 1sxj_A Activator 1 95 kDa subu 94.6 0.024 8E-07 65.2 5.1 24 273-296 78-101 (516)
156 1sxj_B Activator 1 37 kDa subu 94.6 0.025 8.6E-07 60.0 5.0 39 259-297 27-67 (323)
157 2r2a_A Uncharacterized protein 94.6 0.018 6E-07 57.5 3.5 23 273-295 6-28 (199)
158 3vfd_A Spastin; ATPase, microt 94.6 0.027 9.3E-07 62.1 5.4 22 272-293 148-169 (389)
159 2c9o_A RUVB-like 1; hexameric 94.6 0.023 8E-07 64.1 4.9 24 273-296 64-87 (456)
160 3u61_B DNA polymerase accessor 94.6 0.023 7.9E-07 60.7 4.7 39 257-295 30-71 (324)
161 1sxj_E Activator 1 40 kDa subu 94.6 0.026 8.9E-07 61.0 5.0 40 258-297 19-61 (354)
162 1yks_A Genome polyprotein [con 94.5 0.031 1.1E-06 62.8 5.6 21 374-394 38-58 (440)
163 2zan_A Vacuolar protein sortin 94.5 0.028 9.4E-07 63.3 5.1 23 273-295 168-190 (444)
164 2z4s_A Chromosomal replication 94.5 0.03 1E-06 62.9 5.4 26 273-298 131-156 (440)
165 1g8p_A Magnesium-chelatase 38 94.5 0.017 5.8E-07 62.3 3.2 23 272-294 45-67 (350)
166 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.054 1.8E-06 54.3 6.7 29 269-297 20-48 (235)
167 2x8a_A Nuclear valosin-contain 94.3 0.018 6.2E-07 60.4 3.0 20 275-294 47-66 (274)
168 3pxg_A Negative regulator of g 94.2 0.041 1.4E-06 62.3 5.9 39 259-297 186-226 (468)
169 3pvs_A Replication-associated 94.2 0.021 7.3E-07 64.3 3.4 22 273-294 51-72 (447)
170 1ixz_A ATP-dependent metallopr 94.1 0.021 7.3E-07 58.8 3.0 20 275-294 52-71 (254)
171 2v6i_A RNA helicase; membrane, 94.1 0.044 1.5E-06 61.4 5.8 20 374-393 32-51 (431)
172 4a15_A XPD helicase, ATP-depen 94.1 0.076 2.6E-06 62.3 8.0 109 623-750 433-545 (620)
173 1ojl_A Transcriptional regulat 94.1 0.032 1.1E-06 59.5 4.2 24 270-293 23-46 (304)
174 3dm5_A SRP54, signal recogniti 94.0 0.074 2.5E-06 59.5 7.1 26 272-297 100-125 (443)
175 3bh0_A DNAB-like replicative h 94.0 0.095 3.3E-06 56.0 7.8 34 264-297 60-93 (315)
176 1a5t_A Delta prime, HOLB; zinc 93.9 0.045 1.5E-06 59.0 5.1 26 273-298 25-50 (334)
177 3kb2_A SPBC2 prophage-derived 93.9 0.034 1.2E-06 53.1 3.7 22 274-295 3-24 (173)
178 1p9r_A General secretion pathw 93.9 0.053 1.8E-06 60.4 5.7 41 256-296 150-191 (418)
179 2zts_A Putative uncharacterize 93.8 0.074 2.5E-06 54.0 6.4 29 268-296 26-54 (251)
180 1tf5_A Preprotein translocase 93.8 0.11 3.8E-06 62.1 8.5 32 256-290 83-114 (844)
181 1um8_A ATP-dependent CLP prote 93.7 0.031 1.1E-06 61.2 3.4 24 272-295 72-95 (376)
182 1w5s_A Origin recognition comp 93.6 0.035 1.2E-06 61.1 3.8 26 271-296 49-76 (412)
183 1iy2_A ATP-dependent metallopr 93.6 0.03 1E-06 58.6 3.0 20 275-294 76-95 (278)
184 2fna_A Conserved hypothetical 93.6 0.058 2E-06 57.8 5.4 35 259-295 19-53 (357)
185 3lw7_A Adenylate kinase relate 93.5 0.036 1.2E-06 52.8 3.1 20 273-292 2-21 (179)
186 2rhm_A Putative kinase; P-loop 93.5 0.038 1.3E-06 53.9 3.3 24 272-295 5-28 (193)
187 3vaa_A Shikimate kinase, SK; s 93.5 0.048 1.6E-06 53.9 4.1 24 272-295 25-48 (199)
188 3hu3_A Transitional endoplasmi 93.4 0.07 2.4E-06 60.7 5.8 22 272-293 238-259 (489)
189 2qen_A Walker-type ATPase; unk 93.4 0.056 1.9E-06 57.8 4.7 36 259-294 18-53 (350)
190 1ly1_A Polynucleotide kinase; 93.3 0.042 1.5E-06 52.8 3.3 21 274-294 4-24 (181)
191 1kht_A Adenylate kinase; phosp 93.3 0.047 1.6E-06 53.0 3.7 24 273-296 4-27 (192)
192 1qhx_A CPT, protein (chloramph 93.3 0.043 1.5E-06 52.9 3.3 22 273-294 4-25 (178)
193 1nks_A Adenylate kinase; therm 93.3 0.045 1.5E-06 53.2 3.4 23 274-296 3-25 (194)
194 1gvn_B Zeta; postsegregational 93.2 0.074 2.5E-06 56.1 5.2 23 273-295 34-56 (287)
195 3hr8_A Protein RECA; alpha and 93.1 0.076 2.6E-06 57.8 5.2 30 268-297 57-86 (356)
196 2fsf_A Preprotein translocase 93.1 0.31 1.1E-05 58.2 10.7 32 255-289 73-104 (853)
197 2oap_1 GSPE-2, type II secreti 93.1 0.053 1.8E-06 62.0 4.1 39 256-294 244-282 (511)
198 2r8r_A Sensor protein; KDPD, P 93.1 0.077 2.6E-06 53.8 4.8 25 274-298 8-32 (228)
199 3iij_A Coilin-interacting nucl 93.0 0.064 2.2E-06 51.9 4.1 24 272-295 11-34 (180)
200 3trf_A Shikimate kinase, SK; a 93.0 0.062 2.1E-06 52.1 4.0 23 273-295 6-28 (185)
201 1kag_A SKI, shikimate kinase I 92.9 0.055 1.9E-06 51.8 3.4 21 273-293 5-25 (173)
202 1zp6_A Hypothetical protein AT 92.9 0.046 1.6E-06 53.3 2.8 22 272-293 9-30 (191)
203 2bwj_A Adenylate kinase 5; pho 92.8 0.05 1.7E-06 53.3 3.0 24 272-295 12-35 (199)
204 4a1f_A DNAB helicase, replicat 92.8 0.19 6.5E-06 54.2 7.7 35 263-297 37-71 (338)
205 2c95_A Adenylate kinase 1; tra 92.8 0.069 2.4E-06 52.2 3.9 25 271-295 8-32 (196)
206 2plr_A DTMP kinase, probable t 92.7 0.065 2.2E-06 53.0 3.7 24 273-296 5-28 (213)
207 1zak_A Adenylate kinase; ATP:A 92.7 0.066 2.3E-06 53.8 3.8 24 272-295 5-28 (222)
208 3pxi_A Negative regulator of g 92.7 0.095 3.3E-06 63.1 5.7 39 259-297 186-226 (758)
209 3umf_A Adenylate kinase; rossm 92.6 0.062 2.1E-06 54.3 3.4 29 267-295 24-52 (217)
210 1nkt_A Preprotein translocase 92.6 0.15 5.1E-06 61.1 7.2 32 255-289 110-141 (922)
211 1ye8_A Protein THEP1, hypothet 92.6 0.07 2.4E-06 52.1 3.7 23 274-296 2-24 (178)
212 1g41_A Heat shock protein HSLU 92.5 0.095 3.3E-06 58.6 5.1 22 273-294 51-72 (444)
213 1n0w_A DNA repair protein RAD5 92.5 0.051 1.8E-06 55.0 2.7 29 268-296 20-48 (243)
214 3k1j_A LON protease, ATP-depen 92.5 0.071 2.4E-06 62.4 4.2 36 259-294 47-82 (604)
215 2ce7_A Cell division protein F 92.4 0.064 2.2E-06 60.7 3.5 22 274-295 51-72 (476)
216 2r6a_A DNAB helicase, replicat 92.4 0.18 6.3E-06 56.7 7.3 36 262-297 193-228 (454)
217 3cm0_A Adenylate kinase; ATP-b 92.3 0.078 2.7E-06 51.4 3.7 22 274-295 6-27 (186)
218 4eun_A Thermoresistant glucoki 92.3 0.09 3.1E-06 52.0 4.1 24 272-295 29-52 (200)
219 1tev_A UMP-CMP kinase; ploop, 92.3 0.081 2.8E-06 51.4 3.7 23 273-295 4-26 (196)
220 2vhj_A Ntpase P4, P4; non- hyd 92.3 0.068 2.3E-06 57.1 3.3 27 269-295 120-146 (331)
221 2cvh_A DNA repair and recombin 92.1 0.084 2.9E-06 52.5 3.7 27 268-294 16-42 (220)
222 3t61_A Gluconokinase; PSI-biol 92.1 0.08 2.7E-06 52.3 3.5 23 273-295 19-41 (202)
223 2cdn_A Adenylate kinase; phosp 92.1 0.085 2.9E-06 52.0 3.7 23 273-295 21-43 (201)
224 1cr0_A DNA primase/helicase; R 92.0 0.11 3.7E-06 54.7 4.6 35 263-297 26-60 (296)
225 2ehv_A Hypothetical protein PH 92.0 0.094 3.2E-06 53.3 4.0 30 268-297 26-55 (251)
226 2ze6_A Isopentenyl transferase 92.0 0.086 2.9E-06 54.5 3.7 22 274-295 3-24 (253)
227 2iyv_A Shikimate kinase, SK; t 92.0 0.093 3.2E-06 50.9 3.7 22 273-294 3-24 (184)
228 1knq_A Gluconate kinase; ALFA/ 92.0 0.093 3.2E-06 50.4 3.7 22 273-294 9-30 (175)
229 2bdt_A BH3686; alpha-beta prot 92.0 0.084 2.9E-06 51.5 3.4 20 274-293 4-23 (189)
230 2z0h_A DTMP kinase, thymidylat 91.9 0.093 3.2E-06 51.2 3.7 23 274-296 2-24 (197)
231 1via_A Shikimate kinase; struc 91.9 0.089 3E-06 50.6 3.5 22 274-295 6-27 (175)
232 1zd8_A GTP:AMP phosphotransfer 91.9 0.075 2.6E-06 53.6 3.1 24 271-294 6-29 (227)
233 3jvv_A Twitching mobility prot 91.9 0.087 3E-06 57.4 3.7 28 270-297 121-148 (356)
234 3tau_A Guanylate kinase, GMP k 91.9 0.095 3.2E-06 52.2 3.7 23 272-294 8-30 (208)
235 3m6a_A ATP-dependent protease 91.9 0.09 3.1E-06 60.7 4.0 25 272-296 108-132 (543)
236 1xjc_A MOBB protein homolog; s 91.9 0.1 3.6E-06 50.4 3.8 25 273-297 5-29 (169)
237 2ipc_A Preprotein translocase 91.9 0.19 6.5E-06 60.3 6.7 32 255-289 78-109 (997)
238 2p5t_B PEZT; postsegregational 91.9 0.11 3.8E-06 53.5 4.3 22 273-294 33-54 (253)
239 1nn5_A Similar to deoxythymidy 91.8 0.1 3.6E-06 51.7 4.0 25 272-296 9-33 (215)
240 1svm_A Large T antigen; AAA+ f 91.8 0.13 4.5E-06 56.4 5.1 26 269-294 166-191 (377)
241 3fb4_A Adenylate kinase; psych 91.8 0.096 3.3E-06 52.2 3.7 21 275-295 3-23 (216)
242 3tr0_A Guanylate kinase, GMP k 91.8 0.1 3.5E-06 51.4 3.8 24 271-294 6-29 (205)
243 2jaq_A Deoxyguanosine kinase; 91.8 0.097 3.3E-06 51.3 3.7 22 274-295 2-23 (205)
244 1qf9_A UMP/CMP kinase, protein 91.8 0.093 3.2E-06 50.9 3.5 22 273-294 7-28 (194)
245 2qor_A Guanylate kinase; phosp 91.8 0.084 2.9E-06 52.3 3.2 25 271-295 11-35 (204)
246 2gno_A DNA polymerase III, gam 91.7 0.096 3.3E-06 55.8 3.8 45 483-527 82-132 (305)
247 3io5_A Recombination and repai 91.6 0.092 3.1E-06 55.9 3.4 27 272-298 28-54 (333)
248 1e6c_A Shikimate kinase; phosp 91.6 0.1 3.5E-06 49.8 3.5 21 274-294 4-24 (173)
249 1vma_A Cell division protein F 91.5 0.15 5E-06 54.4 4.9 25 272-296 104-128 (306)
250 1y63_A LMAJ004144AAA protein; 91.5 0.12 4E-06 50.4 3.9 23 272-294 10-32 (184)
251 1aky_A Adenylate kinase; ATP:A 91.5 0.12 4.2E-06 51.7 4.1 23 273-295 5-27 (220)
252 3a4m_A L-seryl-tRNA(SEC) kinas 91.5 0.1 3.5E-06 54.0 3.6 25 272-296 4-28 (260)
253 1r6b_X CLPA protein; AAA+, N-t 91.5 0.16 5.6E-06 60.9 5.9 40 258-297 191-232 (758)
254 3bgw_A DNAB-like replicative h 91.5 0.21 7.3E-06 56.0 6.4 36 262-297 187-222 (444)
255 2z43_A DNA repair and recombin 91.4 0.18 6.2E-06 54.0 5.6 28 268-295 103-130 (324)
256 2dhr_A FTSH; AAA+ protein, hex 91.4 0.082 2.8E-06 60.2 3.0 20 275-294 67-86 (499)
257 2wwf_A Thymidilate kinase, put 91.4 0.12 4.1E-06 51.2 3.8 25 272-296 10-34 (212)
258 3dl0_A Adenylate kinase; phosp 91.4 0.092 3.2E-06 52.4 3.0 20 275-294 3-22 (216)
259 2pbr_A DTMP kinase, thymidylat 91.3 0.12 4E-06 50.3 3.7 23 274-296 2-24 (195)
260 2j41_A Guanylate kinase; GMP, 91.3 0.12 4.2E-06 50.8 3.8 22 272-293 6-27 (207)
261 2xb4_A Adenylate kinase; ATP-b 91.3 0.12 3.9E-06 52.2 3.7 22 274-295 2-23 (223)
262 3tlx_A Adenylate kinase 2; str 91.3 0.19 6.4E-06 51.5 5.3 24 272-295 29-52 (243)
263 1nlf_A Regulatory protein REPA 91.3 0.11 3.9E-06 54.2 3.7 28 269-296 27-54 (279)
264 1q57_A DNA primase/helicase; d 91.2 0.18 6.1E-06 57.6 5.6 35 262-296 232-266 (503)
265 2v54_A DTMP kinase, thymidylat 91.2 0.096 3.3E-06 51.5 2.9 23 272-294 4-26 (204)
266 1xp8_A RECA protein, recombina 91.2 0.17 5.8E-06 55.2 5.1 30 268-297 70-99 (366)
267 2yvu_A Probable adenylyl-sulfa 91.1 0.13 4.4E-06 50.0 3.7 25 272-296 13-37 (186)
268 2vli_A Antibiotic resistance p 91.1 0.083 2.8E-06 51.0 2.3 21 273-293 6-26 (183)
269 4a74_A DNA repair and recombin 91.1 0.085 2.9E-06 52.9 2.4 29 268-296 21-49 (231)
270 1kgd_A CASK, peripheral plasma 91.1 0.13 4.5E-06 49.8 3.8 23 272-294 5-27 (180)
271 1ak2_A Adenylate kinase isoenz 91.1 0.12 4.2E-06 52.3 3.7 23 273-295 17-39 (233)
272 3sr0_A Adenylate kinase; phosp 91.1 0.13 4.4E-06 51.4 3.7 21 274-294 2-22 (206)
273 2zr9_A Protein RECA, recombina 91.0 0.12 4.2E-06 56.0 3.8 31 268-298 57-87 (349)
274 1zuh_A Shikimate kinase; alpha 91.0 0.14 4.6E-06 48.9 3.7 22 273-294 8-29 (168)
275 1w36_C RECC, exodeoxyribonucle 90.9 0.074 2.5E-06 66.8 2.2 77 672-748 656-757 (1122)
276 2bbw_A Adenylate kinase 4, AK4 90.9 0.13 4.5E-06 52.6 3.7 24 272-295 27-50 (246)
277 2v3c_C SRP54, signal recogniti 90.9 0.14 4.8E-06 57.2 4.2 25 273-297 100-124 (432)
278 3uie_A Adenylyl-sulfate kinase 90.8 0.14 4.8E-06 50.5 3.7 39 256-296 11-49 (200)
279 2eyu_A Twitching motility prot 90.8 0.14 4.8E-06 53.2 3.9 28 269-296 22-49 (261)
280 1ukz_A Uridylate kinase; trans 90.8 0.12 4E-06 51.0 3.0 22 273-294 16-37 (203)
281 1np6_A Molybdopterin-guanine d 90.7 0.16 5.3E-06 49.4 3.8 26 272-297 6-31 (174)
282 2pt5_A Shikimate kinase, SK; a 90.7 0.15 5.2E-06 48.4 3.7 21 274-294 2-22 (168)
283 3be4_A Adenylate kinase; malar 90.6 0.14 4.7E-06 51.3 3.5 23 273-295 6-28 (217)
284 3f9v_A Minichromosome maintena 90.6 0.084 2.9E-06 61.6 2.1 19 274-292 329-347 (595)
285 2ewv_A Twitching motility prot 90.5 0.14 4.8E-06 56.1 3.7 27 270-296 134-160 (372)
286 3c8u_A Fructokinase; YP_612366 90.5 0.15 5.3E-06 50.6 3.6 24 272-295 22-45 (208)
287 1m7g_A Adenylylsulfate kinase; 90.4 0.27 9.2E-06 48.9 5.4 39 256-296 11-49 (211)
288 3p32_A Probable GTPase RV1496/ 90.4 0.27 9.3E-06 53.3 5.8 26 272-297 79-104 (355)
289 3cf2_A TER ATPase, transitiona 90.4 0.11 3.9E-06 62.3 3.0 20 274-293 240-259 (806)
290 1zu4_A FTSY; GTPase, signal re 90.3 0.23 7.7E-06 53.2 5.0 25 272-296 105-129 (320)
291 2j37_W Signal recognition part 90.3 0.27 9.1E-06 56.0 5.8 24 274-297 103-126 (504)
292 1e4v_A Adenylate kinase; trans 90.2 0.16 5.5E-06 50.7 3.5 21 275-295 3-23 (214)
293 1u94_A RECA protein, recombina 90.2 0.18 6E-06 54.9 4.1 31 268-298 59-89 (356)
294 1c4o_A DNA nucleotide excision 90.2 0.4 1.4E-05 56.7 7.4 39 256-294 8-50 (664)
295 4gp7_A Metallophosphoesterase; 90.0 0.11 3.9E-06 49.9 2.2 21 271-291 8-28 (171)
296 1lvg_A Guanylate kinase, GMP k 90.0 0.18 6.2E-06 49.8 3.7 24 272-295 4-27 (198)
297 2px0_A Flagellar biosynthesis 90.0 0.18 6.1E-06 53.4 3.8 26 272-297 105-130 (296)
298 3a00_A Guanylate kinase, GMP k 89.9 0.15 5.2E-06 49.7 3.0 23 273-295 2-24 (186)
299 1cke_A CK, MSSA, protein (cyti 89.9 0.21 7.1E-06 50.0 4.1 22 273-294 6-27 (227)
300 3pxi_A Negative regulator of g 89.8 0.18 6.2E-06 60.6 4.2 24 274-297 523-546 (758)
301 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.19 6.6E-06 47.3 3.4 25 272-296 23-47 (149)
302 1j8m_F SRP54, signal recogniti 89.6 0.5 1.7E-05 50.0 6.9 25 273-297 99-123 (297)
303 1gtv_A TMK, thymidylate kinase 89.5 0.097 3.3E-06 51.9 1.2 23 274-296 2-24 (214)
304 1qvr_A CLPB protein; coiled co 89.5 0.21 7.2E-06 60.9 4.5 40 259-298 176-217 (854)
305 1jjv_A Dephospho-COA kinase; P 89.4 0.17 5.9E-06 50.0 3.0 19 274-292 4-22 (206)
306 4eaq_A DTMP kinase, thymidylat 89.3 0.21 7.3E-06 50.6 3.7 25 272-296 26-50 (229)
307 1r6b_X CLPA protein; AAA+, N-t 89.3 0.17 6E-06 60.7 3.5 23 274-296 490-512 (758)
308 2v9p_A Replication protein E1; 89.3 0.32 1.1E-05 51.6 5.1 30 267-296 121-150 (305)
309 2pez_A Bifunctional 3'-phospho 89.1 0.24 8.2E-06 47.7 3.7 23 273-295 6-28 (179)
310 2i3b_A HCR-ntpase, human cance 88.9 0.26 8.7E-06 48.5 3.8 23 274-296 3-25 (189)
311 1qvr_A CLPB protein; coiled co 88.9 0.19 6.5E-06 61.3 3.5 25 273-297 589-613 (854)
312 2qmh_A HPR kinase/phosphorylas 88.9 0.22 7.4E-06 49.4 3.2 23 273-295 35-57 (205)
313 3cf2_A TER ATPase, transitiona 88.8 0.16 5.5E-06 61.0 2.6 19 275-293 514-532 (806)
314 2xxa_A Signal recognition part 88.7 0.34 1.1E-05 54.2 5.0 25 273-297 101-125 (433)
315 3b85_A Phosphate starvation-in 88.6 0.37 1.3E-05 48.1 4.8 37 258-295 9-45 (208)
316 1ex7_A Guanylate kinase; subst 88.5 0.28 9.5E-06 48.2 3.6 22 274-295 3-24 (186)
317 2wsm_A Hydrogenase expression/ 88.4 0.32 1.1E-05 48.4 4.2 25 272-296 30-54 (221)
318 1ypw_A Transitional endoplasmi 88.3 0.23 7.9E-06 60.1 3.6 22 272-293 238-259 (806)
319 1rz3_A Hypothetical protein rb 88.3 0.27 9.2E-06 48.6 3.5 25 272-296 22-46 (201)
320 1v5w_A DMC1, meiotic recombina 88.2 0.25 8.5E-06 53.4 3.4 28 268-295 118-145 (343)
321 2q6t_A DNAB replication FORK h 88.0 0.34 1.2E-05 54.3 4.5 37 262-298 190-226 (444)
322 2i1q_A DNA repair and recombin 88.0 0.23 7.8E-06 53.0 3.0 28 268-295 94-121 (322)
323 3tqc_A Pantothenate kinase; bi 88.0 0.41 1.4E-05 51.2 4.9 24 274-298 94-117 (321)
324 1pzn_A RAD51, DNA repair and r 88.0 0.2 6.9E-06 54.3 2.5 28 268-295 127-154 (349)
325 3lnc_A Guanylate kinase, GMP k 87.9 0.2 7E-06 50.5 2.4 25 269-293 24-48 (231)
326 3kta_A Chromosome segregation 87.9 0.27 9.1E-06 47.4 3.1 24 272-295 26-49 (182)
327 1z6g_A Guanylate kinase; struc 87.8 0.31 1E-05 48.9 3.6 30 265-294 16-45 (218)
328 3ake_A Cytidylate kinase; CMP 87.7 0.35 1.2E-05 47.5 4.0 22 273-294 3-24 (208)
329 3ney_A 55 kDa erythrocyte memb 87.7 0.36 1.2E-05 47.8 4.0 23 272-294 19-41 (197)
330 2ga8_A Hypothetical 39.9 kDa p 87.7 0.46 1.6E-05 51.4 5.0 23 274-296 26-48 (359)
331 2if2_A Dephospho-COA kinase; a 87.5 0.28 9.7E-06 48.2 3.1 21 274-294 3-23 (204)
332 3qks_A DNA double-strand break 87.5 0.31 1.1E-05 48.4 3.4 26 272-297 23-48 (203)
333 2qt1_A Nicotinamide riboside k 87.5 0.27 9.3E-06 48.5 3.0 22 272-293 21-42 (207)
334 1ypw_A Transitional endoplasmi 87.4 0.18 6.2E-06 61.0 1.9 24 272-295 511-534 (806)
335 1ltq_A Polynucleotide kinase; 87.4 0.28 9.6E-06 51.5 3.2 21 274-294 4-24 (301)
336 3asz_A Uridine kinase; cytidin 87.3 0.33 1.1E-05 48.0 3.5 22 273-294 7-28 (211)
337 1znw_A Guanylate kinase, GMP k 87.2 0.33 1.1E-05 48.1 3.4 26 269-294 17-42 (207)
338 3u4q_B ATP-dependent helicase/ 87.2 0.37 1.3E-05 60.9 4.6 74 672-745 585-691 (1166)
339 1htw_A HI0065; nucleotide-bind 87.2 0.44 1.5E-05 45.4 4.1 27 270-296 31-57 (158)
340 2qm8_A GTPase/ATPase; G protei 87.1 0.4 1.4E-05 51.7 4.2 28 270-297 53-80 (337)
341 4edh_A DTMP kinase, thymidylat 87.1 0.37 1.3E-05 48.3 3.7 24 273-296 7-30 (213)
342 2hf9_A Probable hydrogenase ni 86.9 0.37 1.3E-05 48.0 3.6 38 259-296 23-62 (226)
343 1uj2_A Uridine-cytidine kinase 86.9 0.32 1.1E-05 49.8 3.2 21 273-293 23-43 (252)
344 4akg_A Glutathione S-transfera 86.8 0.33 1.1E-05 65.5 4.0 32 264-295 1259-1290(2695)
345 3b9q_A Chloroplast SRP recepto 86.8 0.37 1.3E-05 51.1 3.6 25 272-296 100-124 (302)
346 3e70_C DPA, signal recognition 86.7 0.37 1.3E-05 51.7 3.7 25 272-296 129-153 (328)
347 3lda_A DNA repair protein RAD5 86.7 0.29 1E-05 54.0 2.9 29 267-295 173-201 (400)
348 3r20_A Cytidylate kinase; stru 86.7 0.44 1.5E-05 48.5 4.0 22 272-293 9-30 (233)
349 4ag6_A VIRB4 ATPase, type IV s 86.5 0.59 2E-05 51.2 5.3 27 271-297 34-60 (392)
350 1tq4_A IIGP1, interferon-induc 86.5 0.38 1.3E-05 53.4 3.7 36 259-294 56-91 (413)
351 1rj9_A FTSY, signal recognitio 86.5 0.44 1.5E-05 50.6 4.0 25 272-296 102-126 (304)
352 3v9p_A DTMP kinase, thymidylat 86.4 0.42 1.4E-05 48.5 3.7 26 271-296 24-49 (227)
353 1vht_A Dephospho-COA kinase; s 86.4 0.33 1.1E-05 48.3 3.0 20 273-292 5-24 (218)
354 2gza_A Type IV secretion syste 86.3 0.44 1.5E-05 51.9 4.0 31 264-294 167-197 (361)
355 3crm_A TRNA delta(2)-isopenten 86.3 0.33 1.1E-05 51.9 3.0 23 273-295 6-28 (323)
356 2jeo_A Uridine-cytidine kinase 86.2 0.42 1.4E-05 48.7 3.6 24 271-294 24-47 (245)
357 3nwj_A ATSK2; P loop, shikimat 86.0 0.52 1.8E-05 48.5 4.2 23 272-294 48-70 (250)
358 1s96_A Guanylate kinase, GMP k 85.8 0.43 1.5E-05 48.1 3.4 24 271-294 15-38 (219)
359 1sq5_A Pantothenate kinase; P- 85.7 0.58 2E-05 49.6 4.5 23 272-294 80-102 (308)
360 2pt7_A CAG-ALFA; ATPase, prote 85.6 0.39 1.3E-05 51.6 3.1 33 261-293 160-192 (330)
361 3lv8_A DTMP kinase, thymidylat 85.5 0.46 1.6E-05 48.5 3.5 26 272-297 27-52 (236)
362 1yrb_A ATP(GTP)binding protein 85.5 0.49 1.7E-05 48.4 3.7 26 272-297 14-39 (262)
363 3tqf_A HPR(Ser) kinase; transf 85.3 0.43 1.5E-05 46.1 2.9 21 274-294 18-38 (181)
364 1uf9_A TT1252 protein; P-loop, 84.9 0.46 1.6E-05 46.4 3.1 21 273-293 9-29 (203)
365 1z6t_A APAF-1, apoptotic prote 84.9 0.64 2.2E-05 53.8 4.8 35 259-293 130-168 (591)
366 3aez_A Pantothenate kinase; tr 84.7 0.53 1.8E-05 50.1 3.7 26 272-298 90-115 (312)
367 3tmk_A Thymidylate kinase; pho 84.7 0.6 2.1E-05 46.9 3.9 25 272-296 5-29 (216)
368 2o0j_A Terminase, DNA packagin 84.7 2.7 9.3E-05 45.9 9.4 40 256-296 163-202 (385)
369 2og2_A Putative signal recogni 84.5 0.53 1.8E-05 51.1 3.6 25 272-296 157-181 (359)
370 1e9r_A Conjugal transfer prote 84.5 0.81 2.8E-05 50.9 5.2 26 273-298 54-79 (437)
371 1odf_A YGR205W, hypothetical 3 84.5 0.57 1.9E-05 49.3 3.7 25 272-296 31-55 (290)
372 4tmk_A Protein (thymidylate ki 84.3 0.57 1.9E-05 47.0 3.4 25 273-297 4-28 (213)
373 2f6r_A COA synthase, bifunctio 83.6 0.49 1.7E-05 49.5 2.7 20 274-293 77-96 (281)
374 2grj_A Dephospho-COA kinase; T 83.5 0.71 2.4E-05 45.4 3.7 22 273-294 13-34 (192)
375 2yhs_A FTSY, cell division pro 83.5 0.62 2.1E-05 52.6 3.6 25 272-296 293-317 (503)
376 4e22_A Cytidylate kinase; P-lo 83.4 0.66 2.3E-05 47.6 3.6 22 272-293 27-48 (252)
377 3d3q_A TRNA delta(2)-isopenten 83.3 0.58 2E-05 50.3 3.2 23 273-295 8-30 (340)
378 3exa_A TRNA delta(2)-isopenten 83.2 0.49 1.7E-05 50.3 2.5 24 272-295 3-26 (322)
379 3zvl_A Bifunctional polynucleo 83.0 0.65 2.2E-05 51.6 3.5 22 272-293 258-279 (416)
380 3bs4_A Uncharacterized protein 82.8 1.3 4.5E-05 45.7 5.6 29 269-297 18-46 (260)
381 2p67_A LAO/AO transport system 82.8 0.77 2.6E-05 49.4 4.0 27 271-297 55-81 (341)
382 2ffh_A Protein (FFH); SRP54, s 82.7 0.99 3.4E-05 50.1 4.9 24 273-296 99-122 (425)
383 1q3t_A Cytidylate kinase; nucl 82.6 0.9 3.1E-05 45.9 4.2 22 273-294 17-38 (236)
384 3gmt_A Adenylate kinase; ssgci 82.6 0.64 2.2E-05 47.1 3.0 21 275-295 11-31 (230)
385 2www_A Methylmalonic aciduria 82.4 0.68 2.3E-05 50.1 3.3 26 272-297 74-99 (349)
386 3a8t_A Adenylate isopentenyltr 82.2 0.46 1.6E-05 51.0 1.9 22 273-294 41-62 (339)
387 1tf7_A KAIC; homohexamer, hexa 82.2 0.81 2.8E-05 52.4 4.1 31 268-298 35-66 (525)
388 3cmu_A Protein RECA, recombina 82.2 0.73 2.5E-05 60.3 4.0 29 269-297 1424-1452(2050)
389 3qkt_A DNA double-strand break 82.0 0.77 2.6E-05 49.4 3.6 26 272-297 23-48 (339)
390 3foz_A TRNA delta(2)-isopenten 81.7 0.65 2.2E-05 49.2 2.7 23 273-295 11-33 (316)
391 3eph_A TRNA isopentenyltransfe 81.6 0.75 2.6E-05 50.6 3.3 24 273-296 3-26 (409)
392 1tf7_A KAIC; homohexamer, hexa 81.6 0.78 2.7E-05 52.5 3.6 29 268-296 277-305 (525)
393 3ug7_A Arsenical pump-driving 81.4 1.2 4.2E-05 48.0 5.0 27 272-298 26-52 (349)
394 2f1r_A Molybdopterin-guanine d 81.3 0.51 1.8E-05 45.6 1.7 24 273-296 3-26 (171)
395 2h92_A Cytidylate kinase; ross 81.3 0.75 2.6E-05 45.6 3.0 21 273-293 4-24 (219)
396 2ocp_A DGK, deoxyguanosine kin 81.3 0.68 2.3E-05 46.9 2.7 23 273-295 3-25 (241)
397 1a7j_A Phosphoribulokinase; tr 81.1 0.79 2.7E-05 48.2 3.2 24 272-295 5-28 (290)
398 1nrj_B SR-beta, signal recogni 80.9 0.84 2.9E-05 45.0 3.2 22 272-293 12-33 (218)
399 2f9l_A RAB11B, member RAS onco 80.7 0.88 3E-05 44.3 3.2 19 275-293 8-26 (199)
400 2dyk_A GTP-binding protein; GT 80.6 0.91 3.1E-05 41.9 3.2 19 275-293 4-22 (161)
401 3ld9_A DTMP kinase, thymidylat 80.6 1 3.5E-05 45.4 3.7 25 272-296 21-45 (223)
402 2d7d_A Uvrabc system protein B 80.2 2.7 9.2E-05 49.5 7.7 39 256-294 12-54 (661)
403 3qf7_A RAD50; ABC-ATPase, ATPa 79.8 1 3.4E-05 49.1 3.6 25 272-296 23-47 (365)
404 4hlc_A DTMP kinase, thymidylat 79.7 3.3 0.00011 41.0 7.1 24 273-296 3-26 (205)
405 2obl_A ESCN; ATPase, hydrolase 79.6 1.1 3.9E-05 48.3 3.9 33 263-295 60-94 (347)
406 1kao_A RAP2A; GTP-binding prot 79.5 1 3.6E-05 41.6 3.2 19 275-293 6-24 (167)
407 1oix_A RAS-related protein RAB 79.4 0.95 3.3E-05 43.9 2.9 21 274-294 31-51 (191)
408 3vkg_A Dynein heavy chain, cyt 79.3 0.65 2.2E-05 63.4 2.2 31 263-293 1295-1325(3245)
409 3zq6_A Putative arsenical pump 79.1 1.6 5.3E-05 46.6 4.7 26 273-298 15-40 (324)
410 2wji_A Ferrous iron transport 79.0 1 3.6E-05 42.3 3.0 20 274-293 5-24 (165)
411 2ged_A SR-beta, signal recogni 78.9 1.1 3.7E-05 43.1 3.2 23 272-294 48-70 (193)
412 1z2a_A RAS-related protein RAB 78.8 1.1 3.9E-05 41.6 3.2 20 275-294 8-27 (168)
413 4akg_A Glutathione S-transfera 78.8 0.97 3.3E-05 61.1 3.6 41 256-296 629-669 (2695)
414 3hjn_A DTMP kinase, thymidylat 78.7 3.3 0.00011 40.6 6.7 23 274-296 2-24 (197)
415 1ls1_A Signal recognition part 78.6 1.2 4.2E-05 46.8 3.7 25 273-297 99-123 (295)
416 3cmw_A Protein RECA, recombina 78.6 1.6 5.6E-05 56.4 5.4 31 268-298 30-60 (1706)
417 2pcj_A ABC transporter, lipopr 78.4 1.1 3.6E-05 45.3 3.0 22 271-292 29-50 (224)
418 2ce2_X GTPase HRAS; signaling 78.4 1.1 3.8E-05 41.3 3.0 19 275-293 6-24 (166)
419 2cbz_A Multidrug resistance-as 78.4 1.2 4.1E-05 45.3 3.4 23 271-293 30-52 (237)
420 2onk_A Molybdate/tungstate ABC 78.3 1.2 4.1E-05 45.4 3.4 24 269-293 22-45 (240)
421 2ius_A DNA translocase FTSK; n 78.2 1.3 4.5E-05 50.3 4.0 27 272-298 167-193 (512)
422 1ek0_A Protein (GTP-binding pr 78.2 1.2 4.2E-05 41.4 3.2 19 275-293 6-24 (170)
423 3cmw_A Protein RECA, recombina 78.0 1.6 5.3E-05 56.6 5.0 31 268-298 379-409 (1706)
424 1wms_A RAB-9, RAB9, RAS-relate 78.0 1.2 4.1E-05 41.9 3.2 19 275-293 10-28 (177)
425 1sgw_A Putative ABC transporte 78.0 1.1 3.9E-05 44.8 3.0 22 271-292 34-55 (214)
426 1g16_A RAS-related protein SEC 77.8 1.2 4E-05 41.5 3.0 19 275-293 6-24 (170)
427 1c9k_A COBU, adenosylcobinamid 77.6 1.1 3.8E-05 43.5 2.8 20 274-293 1-20 (180)
428 1ky3_A GTP-binding protein YPT 77.4 1.3 4.4E-05 41.8 3.2 19 275-293 11-29 (182)
429 2axn_A 6-phosphofructo-2-kinas 77.3 1.3 4.5E-05 50.6 3.7 24 273-296 36-59 (520)
430 3tif_A Uncharacterized ABC tra 77.2 1.4 4.6E-05 44.8 3.4 22 271-292 30-51 (235)
431 1z0j_A RAB-22, RAS-related pro 77.0 1.4 4.7E-05 41.1 3.2 19 275-293 9-27 (170)
432 1p5z_B DCK, deoxycytidine kina 77.0 1 3.6E-05 46.2 2.5 21 272-292 24-44 (263)
433 1u8z_A RAS-related protein RAL 76.8 1.4 4.8E-05 40.7 3.2 19 275-293 7-25 (168)
434 1r2q_A RAS-related protein RAB 76.7 1.4 4.8E-05 40.9 3.2 19 275-293 9-27 (170)
435 2erx_A GTP-binding protein DI- 76.7 1.3 4.6E-05 41.2 3.0 19 275-293 6-24 (172)
436 3sop_A Neuronal-specific septi 76.6 1.4 4.6E-05 45.9 3.3 22 275-296 5-26 (270)
437 2rcn_A Probable GTPase ENGC; Y 76.6 1.9 6.6E-05 46.6 4.6 22 272-293 215-236 (358)
438 2d2e_A SUFC protein; ABC-ATPas 76.6 1.4 4.9E-05 45.0 3.4 24 271-294 28-51 (250)
439 1b0u_A Histidine permease; ABC 76.5 1.4 4.8E-05 45.5 3.4 22 271-292 31-52 (262)
440 2nzj_A GTP-binding protein REM 76.3 1.4 4.7E-05 41.3 3.0 19 275-293 7-25 (175)
441 1ihu_A Arsenical pump-driving 76.3 2.3 7.8E-05 49.3 5.4 27 272-298 8-34 (589)
442 1g6h_A High-affinity branched- 76.1 1.4 4.9E-05 45.3 3.2 22 271-292 32-53 (257)
443 1ji0_A ABC transporter; ATP bi 76.1 1.4 4.9E-05 44.8 3.2 22 271-292 31-52 (240)
444 2olj_A Amino acid ABC transpor 76.1 1.5 5.1E-05 45.4 3.4 22 271-292 49-70 (263)
445 3iqw_A Tail-anchored protein t 76.0 2.3 7.9E-05 45.6 5.0 26 272-297 16-41 (334)
446 1z08_A RAS-related protein RAB 76.0 1.5 5.1E-05 40.8 3.1 19 275-293 9-27 (170)
447 3gfo_A Cobalt import ATP-bindi 76.0 1.4 4.8E-05 45.9 3.2 23 271-293 33-55 (275)
448 3q85_A GTP-binding protein REM 75.9 1.4 4.9E-05 41.0 3.0 19 275-293 5-23 (169)
449 2ff7_A Alpha-hemolysin translo 75.9 1.5 5E-05 44.9 3.2 22 271-292 34-55 (247)
450 2zu0_C Probable ATP-dependent 75.8 1.6 5.4E-05 45.2 3.5 23 271-293 45-67 (267)
451 1knx_A Probable HPR(Ser) kinas 75.7 1.3 4.3E-05 47.1 2.7 20 274-293 149-168 (312)
452 1nij_A Hypothetical protein YJ 75.7 1.2 4E-05 47.5 2.6 22 273-294 5-26 (318)
453 2ghi_A Transport protein; mult 75.7 1.5 5.3E-05 45.1 3.4 23 271-293 45-67 (260)
454 2qi9_C Vitamin B12 import ATP- 75.6 1.5 5.1E-05 45.0 3.2 23 271-293 25-47 (249)
455 1c1y_A RAS-related protein RAP 75.6 1.6 5.4E-05 40.5 3.2 19 275-293 6-24 (167)
456 3bfv_A CAPA1, CAPB2, membrane 75.5 2.9 9.9E-05 43.3 5.5 26 273-298 83-109 (271)
457 1vpl_A ABC transporter, ATP-bi 75.5 1.6 5.4E-05 45.0 3.4 22 271-292 40-61 (256)
458 2lkc_A Translation initiation 75.3 1.9 6.4E-05 40.6 3.7 22 272-293 8-29 (178)
459 2y8e_A RAB-protein 6, GH09086P 75.2 1.5 5.2E-05 41.2 3.0 19 275-293 17-35 (179)
460 1mv5_A LMRA, multidrug resista 75.2 1.4 4.7E-05 44.9 2.8 23 271-293 27-49 (243)
461 2pze_A Cystic fibrosis transme 75.2 1.6 5.4E-05 44.1 3.2 23 271-293 33-55 (229)
462 1svi_A GTP-binding protein YSX 75.1 1.4 4.7E-05 42.4 2.7 21 273-293 24-44 (195)
463 3ice_A Transcription terminati 75.0 2 6.8E-05 47.0 4.1 36 261-296 161-198 (422)
464 3clv_A RAB5 protein, putative; 74.9 1.6 5.5E-05 41.8 3.2 19 275-293 10-28 (208)
465 2zej_A Dardarin, leucine-rich 74.8 1.3 4.6E-05 42.4 2.5 19 275-293 5-23 (184)
466 1r8s_A ADP-ribosylation factor 74.8 1.7 5.8E-05 40.2 3.2 20 275-294 3-22 (164)
467 2ixe_A Antigen peptide transpo 74.7 1.7 5.8E-05 45.2 3.4 22 271-292 44-65 (271)
468 2hxs_A RAB-26, RAS-related pro 74.7 1.6 5.5E-05 41.1 3.0 19 275-293 9-27 (178)
469 2oil_A CATX-8, RAS-related pro 74.6 1.7 5.8E-05 41.8 3.2 19 275-293 28-46 (193)
470 2wjg_A FEOB, ferrous iron tran 74.6 1.6 5.5E-05 41.6 3.0 20 274-293 9-28 (188)
471 2yv5_A YJEQ protein; hydrolase 74.5 2.5 8.4E-05 44.6 4.7 29 264-293 158-186 (302)
472 1sky_E F1-ATPase, F1-ATP synth 74.3 2 6.8E-05 48.2 4.0 27 271-297 150-176 (473)
473 2nq2_C Hypothetical ABC transp 74.3 1.7 5.7E-05 44.7 3.2 22 271-292 30-51 (253)
474 3bc1_A RAS-related protein RAB 74.2 1.8 6E-05 41.3 3.2 19 275-293 14-32 (195)
475 2qag_B Septin-6, protein NEDD5 74.1 2.3 7.7E-05 47.2 4.3 33 262-294 30-64 (427)
476 1upt_A ARL1, ADP-ribosylation 74.0 1.8 6.2E-05 40.3 3.2 20 274-293 9-28 (171)
477 1z0f_A RAB14, member RAS oncog 73.9 1.8 6.3E-05 40.6 3.2 19 275-293 18-36 (179)
478 2yz2_A Putative ABC transporte 73.9 1.8 6.2E-05 44.7 3.4 22 271-292 32-53 (266)
479 4dsu_A GTPase KRAS, isoform 2B 73.7 1.8 6.3E-05 41.0 3.2 19 275-293 7-25 (189)
480 2cxx_A Probable GTP-binding pr 73.7 1.6 5.4E-05 41.6 2.7 19 275-293 4-22 (190)
481 2efe_B Small GTP-binding prote 73.7 1.8 6.3E-05 40.8 3.1 19 275-293 15-33 (181)
482 2ihy_A ABC transporter, ATP-bi 73.7 1.8 6E-05 45.2 3.2 22 271-292 46-67 (279)
483 3con_A GTPase NRAS; structural 73.6 1.9 6.4E-05 41.3 3.2 19 275-293 24-42 (190)
484 3io3_A DEHA2D07832P; chaperone 73.6 3 0.0001 44.9 5.2 26 272-297 18-43 (348)
485 4g1u_C Hemin import ATP-bindin 73.5 1.8 6.1E-05 44.9 3.2 23 271-293 36-58 (266)
486 3q72_A GTP-binding protein RAD 73.3 1.6 5.6E-05 40.5 2.6 18 275-292 5-22 (166)
487 2fn4_A P23, RAS-related protei 73.1 1.8 6.2E-05 40.7 2.9 20 275-294 12-31 (181)
488 3cio_A ETK, tyrosine-protein k 73.1 3.3 0.00011 43.6 5.2 26 273-298 105-131 (299)
489 1m7b_A RND3/RHOE small GTP-bin 73.0 1.8 6.3E-05 41.2 3.0 20 275-294 10-29 (184)
490 2bme_A RAB4A, RAS-related prot 72.9 1.9 6.3E-05 41.0 3.0 19 275-293 13-31 (186)
491 2woo_A ATPase GET3; tail-ancho 72.9 3.3 0.00011 44.2 5.2 26 272-297 19-44 (329)
492 2yyz_A Sugar ABC transporter, 72.8 2 7E-05 46.5 3.6 23 271-293 28-50 (359)
493 3auy_A DNA double-strand break 72.8 2 6.7E-05 46.7 3.5 26 272-297 25-50 (371)
494 1z47_A CYSA, putative ABC-tran 72.8 2 6.8E-05 46.5 3.4 23 271-293 40-62 (355)
495 3pqc_A Probable GTP-binding pr 72.7 1.7 5.8E-05 41.5 2.7 21 273-293 24-44 (195)
496 1bif_A 6-phosphofructo-2-kinas 72.7 2 7E-05 48.2 3.7 24 273-296 40-63 (469)
497 1vg8_A RAS-related protein RAB 72.7 2 6.7E-05 41.7 3.2 19 275-293 11-29 (207)
498 2g6b_A RAS-related protein RAB 72.6 2.1 7E-05 40.4 3.2 19 275-293 13-31 (180)
499 2a9k_A RAS-related protein RAL 72.5 2 6.7E-05 40.7 3.0 19 275-293 21-39 (187)
500 3kkq_A RAS-related protein M-R 72.4 2 6.7E-05 40.8 3.0 19 275-293 21-39 (183)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=6.4e-85 Score=779.60 Aligned_cols=570 Identities=27% Similarity=0.347 Sum_probs=428.4
Q ss_pred CHHHHHHHchHHHHHHHHHHHHHhhhh---------ccccceeeeE--eeeecccCCeEEEEEEeecCc------ccCCC
Q 003388 60 DVDDYLATFEPLLFEEVKAQIIQKKDE---------EEVQEWKLRL--VMECGEADGFHLPSVTYEADE------VESIS 122 (824)
Q Consensus 60 s~~~Y~~~f~pLlleE~~aql~~~~~~---------~~~~~~~~~~--v~~~~~~~~f~~~~~~~~~~~------~~~~~ 122 (824)
++++|++.|.+||..|..+++.+.++. +....|...+ ........+-+.++|...... ...|.
T Consensus 3 ~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 82 (646)
T 4b3f_X 3 AVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFT 82 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCCC
Confidence 579999999999999998888554332 1122232222 222233455567777643211 24688
Q ss_pred CCcEEEEeccCccCCCCCCceEEEEEEEeecCceEEEEEeeccccccccccccchhhhhhhhhccccccccccceEEEEE
Q 003388 123 PNDLLLLSKEEFKEGSTFPTTYAFALVEHCQANLLRLRMYLAGEVIHINKDAVKSQRLLNIHSLITSSVSAVEKRLFSLK 202 (824)
Q Consensus 123 ~gDlvlls~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 202 (824)
.||+|+|+...+.. ...+.|+|..+....+.|.+--..+ ... .......|++.+
T Consensus 83 ~Gd~v~~~~~~~~~-----~~~~~g~v~~~~~~~i~v~~~~~~~-----------~~~----------~~~~~~~~~~~~ 136 (646)
T 4b3f_X 83 SGDIVGLYDAANEG-----SQLATGILTRVTQKSVTVAFDESHD-----------FQL----------SLDRENSYRLLK 136 (646)
T ss_dssp TTCEEEEEETTTTS-----CCCEEEEEEEEETTEEEEECC----------------------------CCCSSCCEEEEE
T ss_pred CCCEEEEEecCCCC-----CceEEEEEEEEeCCEEEEEECCccc-----------ccc----------ccCCCCcEEEEE
Confidence 99999999766432 2234588888888777765421100 000 012345789999
Q ss_pred ecChhhHHHHHHHHHhcCCCC------ccccccccccCCCCCCCCCcccCcchhhhhccCCCHHHHHHHHHhhcCCCeEE
Q 003388 203 ICSLSTIAREYLALRSVGSLP------FKDLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVL 276 (824)
Q Consensus 203 l~~~~t~~Re~~aL~~~~~~~------~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~sQ~~AI~~~l~~~~~~L 276 (824)
+.|.+|+.|++.||..+.... +.++|+....|...... ....+++.+||++|++||..+|..++++|
T Consensus 137 ~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~~-------~~~~~~~~~LN~~Q~~AV~~al~~~~~~l 209 (646)
T 4b3f_X 137 LANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASEI-------HPLTFFNTCLDTSQKEAVLFALSQKELAI 209 (646)
T ss_dssp ECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCCC-------CCCCCSSTTCCHHHHHHHHHHHHCSSEEE
T ss_pred eccchHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCCcccc-------CcccccCCCCCHHHHHHHHHHhcCCCceE
Confidence 999999999999999985432 34667765433221111 11234567899999999999998888999
Q ss_pred EEcCCCCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCcC
Q 003388 277 IQGPPGTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASPWLVGANPRDNIMPIDGDDGFFPT 356 (824)
Q Consensus 277 IqGPPGTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 356 (824)
||||||||||+||+++|..++.
T Consensus 210 I~GPPGTGKT~ti~~~I~~l~~---------------------------------------------------------- 231 (646)
T 4b3f_X 210 IHGPPGTGKTTTVVEIILQAVK---------------------------------------------------------- 231 (646)
T ss_dssp EECCTTSCHHHHHHHHHHHHHH----------------------------------------------------------
T ss_pred EECCCCCCHHHHHHHHHHHHHh----------------------------------------------------------
Confidence 9999999999999999988875
Q ss_pred CCCCCCccccccccccccEEEEEcCchhHHHHHHHHHHhcCCCccccccCCCcEEEEecCC--CcccccccHHHHHHHHH
Q 003388 357 TGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKA--HHSVNSVAIDHLVEQKR 434 (824)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~g~~~~~~~~~~~~ivRig~~~--~~~~~~~sld~l~~~~l 434 (824)
.+.+||||||||.|||+|++||...+. +++|+|... +..+...+++.++...-
T Consensus 232 ---------------~~~~ILv~a~TN~AvD~i~erL~~~~~----------~ilRlG~~~r~~~~~~~~~l~~~~~~~~ 286 (646)
T 4b3f_X 232 ---------------QGLKVLCCAPSNIAVDNLVERLALCKQ----------RILRLGHPARLLESIQQHSLDAVLARSD 286 (646)
T ss_dssp ---------------TTCCEEEEESSHHHHHHHHHHHHHTTC----------CEEECSCCSSCCHHHHTTBHHHHHTTTT
T ss_pred ---------------CCCeEEEEcCchHHHHHHHHHHHhcCC----------ceEEecchhhhhhhhhhhhHHHHHhhch
Confidence 135899999999999999999976543 699999865 34566677776553211
Q ss_pred hh-----h--HH-----------HhhhcCCChh-----------hHHHHHHHHhcCCcEEEEcCccchhhHHhh--cCCC
Q 003388 435 DD-----S--AA-----------DKQKHGATRK-----------DRDSIRSAILNEAVIVCSTLSFSGSALLSK--LNHG 483 (824)
Q Consensus 435 ~~-----~--~~-----------~~~~~~~~~~-----------~~~~~~~~il~~a~IV~sTls~s~~~~~~~--~~~~ 483 (824)
.. . .. +......... ........++..++||++|+++++...... ....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~ 366 (646)
T 4b3f_X 287 SAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESY 366 (646)
T ss_dssp CSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhcc
Confidence 00 0 00 0000000000 112233457889999999998887643222 2357
Q ss_pred cCEEEEcCCCCCCchhhHhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHc--CCCCcccccccccChh
Q 003388 484 FDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRA--GYPVKMLKTQYRMHPE 561 (824)
Q Consensus 484 fd~vIIDEAsq~~e~~~lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~--~~~~~~L~~qYRm~p~ 561 (824)
||+||||||+|++||++|+||. .++++||||||+||||++.+..+...|++.|+|+||... +.++.+|++||||||.
T Consensus 367 Fd~vIIDEAsQ~~e~~~lipL~-~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~ 445 (646)
T 4b3f_X 367 FDVVVIDECAQALEASCWIPLL-KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQA 445 (646)
T ss_dssp CSEEEETTGGGSCHHHHTTTGG-GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSSCHH
T ss_pred CCEEEEcCccccchHHHHhhcc-ccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCCcHH
Confidence 9999999999999999999997 578999999999999999999999999999999999865 3456789999999999
Q ss_pred hhhccchhhccccccCCCCcccccccCcC----ccCCCCCeEEEEcCCCc---ccccCCCCCcccHHHHHHHHHHHHHHH
Q 003388 562 VRSFPSREFYDEALEDGSDVEDYTTRDWH----EYRCFGPFSFFDIHEGK---ESQPAGSGSWINIDEVDFVLLLFHKLI 634 (824)
Q Consensus 562 I~~f~s~~fY~~~L~~~~~~~~~~~~~~~----~~~~~~p~~f~dv~~g~---e~~~~~~~S~~N~~Ea~~v~~lv~~L~ 634 (824)
|+.|+|..||+|+|.+++.+.......++ ......|+.|+|+ .|. +.....+.|+.|..||.+|..++..|.
T Consensus 446 I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~-~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~ 524 (646)
T 4b3f_X 446 IMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALV 524 (646)
T ss_dssp HHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEEC-TTSSCCCCC-----CCCCHHHHHHHHHHHHHHH
T ss_pred HHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEec-CCCccccccccCCccccCHHHHHHHHHHHHHHH
Confidence 99999999999999998877665433322 2223458999999 553 233345679999999999999999999
Q ss_pred HhCCCCCCCCeEEEEcCcHHHHHHHHHHHhhhhCCCCCcceEEecCCCCCCccccEEEEEeeecCCCCcccccCCCCeeE
Q 003388 635 SMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMN 714 (824)
Q Consensus 635 ~~~~~~~~~~~IgIItpY~~Q~~~i~~~l~~~~~~~~~~~v~V~TVd~fQG~E~diVIlS~vrs~~~~~igfl~d~rrlN 714 (824)
..+ ....+|||||||++|+.+|++.|.+.+ ..++|+|||+|||+|+|+||+||||++..+.+||+.|+||||
T Consensus 525 ~~g---v~~~dIgVItpYraQ~~~l~~~l~~~~-----~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlN 596 (646)
T 4b3f_X 525 DAG---VPARDIAVVSPYNLQVDLLRQSLVHRH-----PELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRIN 596 (646)
T ss_dssp HHT---CCGGGEEEEESCHHHHHHHHHHHTTTC-----TTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHH
T ss_pred hcC---CCcCcEEEECCCHHHHHHHHHHHHHhC-----CCCEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEE
Confidence 875 356899999999999999999997643 358999999999999999999999999889999999999999
Q ss_pred eeeecccceEEEEecCccccCCchHHHHHHHHHHcCcEEEc
Q 003388 715 VGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQDCLFRV 755 (824)
Q Consensus 715 VAlTRAk~~LiIvG~~~~L~~~~~w~~li~~~~~~~~~~~~ 755 (824)
||+||||++||||||..+|++++.|+.|+++++++|++...
T Consensus 597 VAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~g~~~~~ 637 (646)
T 4b3f_X 597 VAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 637 (646)
T ss_dssp HHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHSSEEEEG
T ss_pred eEhhhhhCeEEEEEchHHhcCCHHHHHHHHHHHHCCCEeeH
Confidence 99999999999999999999999999999999999999865
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=4.5e-75 Score=690.79 Aligned_cols=577 Identities=28% Similarity=0.407 Sum_probs=414.0
Q ss_pred ccccccCCHHHHHHHchHHHHHHHHHHHHHhhhhccccceeeeEeee-ecccCCeEEEEEEeec-CcccCCCCCcEEEEe
Q 003388 53 EVKDTYKDVDDYLATFEPLLFEEVKAQIIQKKDEEEVQEWKLRLVME-CGEADGFHLPSVTYEA-DEVESISPNDLLLLS 130 (824)
Q Consensus 53 ~Vp~~F~s~~~Y~~~f~pLlleE~~aql~~~~~~~~~~~~~~~~v~~-~~~~~~f~~~~~~~~~-~~~~~~~~gDlvlls 130 (824)
+|+.+|.|+.+|.++|.|||..|.+++... .+... ...+... ....++.+...+.+.. .....+..||+|+|+
T Consensus 1 ~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~l~ 75 (624)
T 2gk6_A 1 PLGSRYEDAYQYQNIFGPLVKLEADYDKKL--KESQT---QDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLR 75 (624)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHH--HHHTC---EEEECEEEEECTTSCEEEEEECC-------CCTTCEEEEE
T ss_pred CcCCccCCHHHHHHHHHHHHHHHHHHHHHH--Hhhhh---ccCceEEeeecCCCceEEEEEecccccCCcCCCCCEEEEE
Confidence 478999999999999999999999877532 11111 1111111 1223455566655443 234678999999998
Q ss_pred ccCccCCCCCCceEEEEEEEeecC---ceEEEEEeeccccccccccccchhhhhhhhhccccccccccceEEEEEecChh
Q 003388 131 KEEFKEGSTFPTTYAFALVEHCQA---NLLRLRMYLAGEVIHINKDAVKSQRLLNIHSLITSSVSAVEKRLFSLKICSLS 207 (824)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 207 (824)
...+.. +...+.|+|..+.. ..+.|.+.... ..+ . .....+.+..+.+.+
T Consensus 76 ~~~~~~----~~~~~~g~v~~~~~~~~~~v~v~~~~~~-------~~~--------------~--~~~~~~~~~~~~~~~ 128 (624)
T 2gk6_A 76 YKGDLA----PLWKGIGHVIKVPDNYGDEIAIELRSSV-------GAP--------------V--EVTHNFQVDFVWKST 128 (624)
T ss_dssp ECSSSS----CCCEEEEEEEECSCSSCSEEEEEESCCT-------TCC--------------C--SCCSSEEEEECCCCH
T ss_pred ECCCCC----CCcEEEEEEEEecCCCCCEEEEEEccCC-------CCc--------------c--ccccceEEEEEeCCc
Confidence 654322 22345688887754 34555442110 000 0 012245666788999
Q ss_pred hHHHHHHHHHhcCCC--C----ccccccccccCCCCCCCCCcccCcchhhhhccCCCHHHHHHHHHhhcCCCeEEEEcCC
Q 003388 208 TIAREYLALRSVGSL--P----FKDLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVLIQGPP 281 (824)
Q Consensus 208 t~~Re~~aL~~~~~~--~----~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~sQ~~AI~~~l~~~~~~LIqGPP 281 (824)
|+.|++.||+.+... + +.+.++....+... ....+|..........||++|.+||..++. .++++|+|||
T Consensus 129 ~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~-~~~~li~Gpp 204 (624)
T 2gk6_A 129 SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVI---IKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-RPLSLIQGPP 204 (624)
T ss_dssp HHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCC---CCCCCCSCCSCTTSCCCCHHHHHHHHHHHT-CSEEEEECCT
T ss_pred hHHHHHHHHHHHHhccccchHHHHHHhcCCCCcccc---ccccCcccccccccCCCCHHHHHHHHHHhc-CCCeEEECCC
Confidence 999999999887422 1 23445543221111 011122211111234799999999999986 5799999999
Q ss_pred CCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCcCCCCCC
Q 003388 282 GTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASPWLVGANPRDNIMPIDGDDGFFPTTGNEL 361 (824)
Q Consensus 282 GTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 361 (824)
|||||+|++.++..++..
T Consensus 205 GTGKT~~~~~~i~~l~~~-------------------------------------------------------------- 222 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQ-------------------------------------------------------------- 222 (624)
T ss_dssp TSCHHHHHHHHHHHHHTS--------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHc--------------------------------------------------------------
Confidence 999999999999877631
Q ss_pred CccccccccccccEEEEEcCchhHHHHHHHHHHhcCCCccccccCCCcEEEEecCCC----cccccccHHHHHHHHHhhh
Q 003388 362 KPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH----HSVNSVAIDHLVEQKRDDS 437 (824)
Q Consensus 362 ~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~g~~~~~~~~~~~~ivRig~~~~----~~~~~~sld~l~~~~l~~~ 437 (824)
.+.+||+|||||.|+|++.+|+.+.|+ +++|+|.... ..+..++++.++...-...
T Consensus 223 ----------~~~~ilv~a~tn~A~~~l~~~l~~~~~----------~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~ 282 (624)
T 2gk6_A 223 ----------GNGPVLVCAPSNIAVDQLTEKIHQTGL----------KVVRLCAKSREAIDSPVSFLALHNQIRNMDSMP 282 (624)
T ss_dssp ----------SSCCEEEEESSHHHHHHHHHHHHTTTC----------CEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCH
T ss_pred ----------CCCeEEEEeCcHHHHHHHHHHHHhcCC----------eEEeeccccchhhccchhhhhHHHHHHhccchH
Confidence 135999999999999999999977653 5899997643 2334456665543100000
Q ss_pred HHHh---hh--cCCC--------hhhHHHHHHHHhcCCcEEEEcCccchhhHHhhcCCCcCEEEEcCCCCCCchhhHhhh
Q 003388 438 AADK---QK--HGAT--------RKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPATLVPL 504 (824)
Q Consensus 438 ~~~~---~~--~~~~--------~~~~~~~~~~il~~a~IV~sTls~s~~~~~~~~~~~fd~vIIDEAsq~~e~~~lipL 504 (824)
.... .+ .+.. ......+...+++.++||++|+++++...+. ...||+||||||+|+++|++|+|+
T Consensus 283 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l~--~~~fd~viIDEAsQ~~e~~~li~l 360 (624)
T 2gk6_A 283 ELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLA--KMQFRSILIDESTQATEPECMVPV 360 (624)
T ss_dssp HHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGGT--TCCCSEEEETTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchhhh--cCCCCEEEEecccccCcHHHHHHH
Confidence 0000 00 0000 0111234467899999999999988765554 347999999999999999999999
Q ss_pred hccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCcccccccccChhhhhccchhhccccccCCCCcccc
Q 003388 505 ATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSDVEDY 584 (824)
Q Consensus 505 ~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~L~~qYRm~p~I~~f~s~~fY~~~L~~~~~~~~~ 584 (824)
..+++++||||||+||||++.+..+...|++.|+|+|+...+.+.++|++||||||+|++|+|..||+|+|.++.....+
T Consensus 361 ~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r 440 (624)
T 2gk6_A 361 VLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR 440 (624)
T ss_dssp TTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGG
T ss_pred HhcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhh
Confidence 98889999999999999999999888899999999999988888899999999999999999999999999887655433
Q ss_pred cc----cCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCcHHHHHHHH
Q 003388 585 TT----RDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQ 660 (824)
Q Consensus 585 ~~----~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~~~~~~~IgIItpY~~Q~~~i~ 660 (824)
.. .+|+. ...|+.|+++ .|.+.....+.|+.|..||..|..++..|...+ ....+|||||||++|+..|+
T Consensus 441 ~~~~~~~~~~~--~~~p~~~~~~-~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g---~~~~dIgVItpy~~Q~~~i~ 514 (624)
T 2gk6_A 441 VKKGFDFQWPQ--PDKPMFFYVT-QGQEEIASSGTSYLNRTEAANVEKITTKLLKAG---AKPDQIGIITPYEGQRSYLV 514 (624)
T ss_dssp CCTTCCCCCSS--TTCCEEEEEC-CCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTT---CCGGGEEEECSCHHHHHHHH
T ss_pred cccccCCCCCC--CCCCEEEEEc-CCcceecCCCCCccCHHHHHHHHHHHHHHHHcC---CCCCeEEEEcCCHHHHHHHH
Confidence 21 23432 3458899998 777666556779999999999999999987653 34679999999999999999
Q ss_pred HHHhhhhCC--CCCcceEEecCCCCCCccccEEEEEeeecCCCCcccccCCCCeeEeeeecccceEEEEecCccccCCch
Q 003388 661 ERFKETFGV--ESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKH 738 (824)
Q Consensus 661 ~~l~~~~~~--~~~~~v~V~TVd~fQG~E~diVIlS~vrs~~~~~igfl~d~rrlNVAlTRAk~~LiIvG~~~~L~~~~~ 738 (824)
+.|...... .....+.|+|||+|||+|+|+||+|+||++..+++||+.|+||||||+||||++||||||..+|+.++.
T Consensus 515 ~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~~~~ 594 (624)
T 2gk6_A 515 QYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPL 594 (624)
T ss_dssp HHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTTSHH
T ss_pred HHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEEECHHHHccChH
Confidence 998753111 012468999999999999999999999998777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEc
Q 003388 739 WNNLVKSAEKQDCLFRV 755 (824)
Q Consensus 739 w~~li~~~~~~~~~~~~ 755 (824)
|+.|+++++++|+++..
T Consensus 595 ~~~li~~~~~~~~~~~~ 611 (624)
T 2gk6_A 595 WNHLLNYYKEQKVLVEG 611 (624)
T ss_dssp HHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHCCCEEeC
Confidence 99999999999999754
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=2.1e-73 Score=687.80 Aligned_cols=583 Identities=27% Similarity=0.398 Sum_probs=425.1
Q ss_pred cccccccccccCCHHHHHHHchHHHHHHHHHHHHHhhhhccccceeeeEeeee-cccCCeEEEEEEeec-CcccCCCCCc
Q 003388 48 KLGLREVKDTYKDVDDYLATFEPLLFEEVKAQIIQKKDEEEVQEWKLRLVMEC-GEADGFHLPSVTYEA-DEVESISPND 125 (824)
Q Consensus 48 ~~~~~~Vp~~F~s~~~Y~~~f~pLlleE~~aql~~~~~~~~~~~~~~~~v~~~-~~~~~f~~~~~~~~~-~~~~~~~~gD 125 (824)
...+.+||.+|.|+.+|.++|.||+..|.+++... .+... . ..+...+ ...++.....+.... .....+..||
T Consensus 172 ~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~--~e~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD 246 (800)
T 2wjy_A 172 DEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL--KESQT-Q--DNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGD 246 (800)
T ss_dssp --CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHH--HHHTC-E--EEECCEEEECTTCCEEEEECCCBCCC--CCCTTC
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHhhhhh--hhhhh-c--cceEEEEEecCCCeeEEEEEeccccCCCCCCCCC
Confidence 35678999999999999999999999998876531 11111 0 1111111 223445555554433 3356789999
Q ss_pred EEEEeccCccCCCCCCceEEEEEEEeecC---ceEEEEEeeccccccccccccchhhhhhhhhccccccccccceEEEEE
Q 003388 126 LLLLSKEEFKEGSTFPTTYAFALVEHCQA---NLLRLRMYLAGEVIHINKDAVKSQRLLNIHSLITSSVSAVEKRLFSLK 202 (824)
Q Consensus 126 lvlls~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 202 (824)
+|.|+...+.. +.....|+|..+.. ..+.+.+.... .. .. .....+.+..
T Consensus 247 ~v~l~~~~~~~----~~~~~~g~V~~v~~~~~~~v~l~~~~~~--------~~----------p~-----~~~~~~~v~~ 299 (800)
T 2wjy_A 247 EICLRYKGDLA----PLWKGIGHVIKVPDNYGDEIAIELRSSV--------GA----------PV-----EVTHNFQVDF 299 (800)
T ss_dssp EEEEEECSSSS----CCEEEEEEEEECSBTTBSCEEEEESCCT--------TC----------CT-----TCCSCEEEEE
T ss_pred EEEEEECCCCC----CCceeEEEEEEEcCCCCCEEEEEEccCC--------CC----------cc-----ccCCCceEEE
Confidence 99999655432 12345677877654 34444331100 00 00 0122355667
Q ss_pred ecChhhHHHHHHHHHhcCCC--C----ccccccccccCCCCCCCCCcccCcchhhhhccCCCHHHHHHHHHhhcCCCeEE
Q 003388 203 ICSLSTIAREYLALRSVGSL--P----FKDLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVL 276 (824)
Q Consensus 203 l~~~~t~~Re~~aL~~~~~~--~----~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~sQ~~AI~~~l~~~~~~L 276 (824)
+.+.+|+.|++.||+.+... . +.+.++....+... ....+|..........||++|++||..++. .++++
T Consensus 300 ~~~~~~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~---~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~-~~~~l 375 (800)
T 2wjy_A 300 VWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVI---IKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-RPLSL 375 (800)
T ss_dssp CCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCC---CCCCCCSCCSCTTSCCCCHHHHHHHHHHHT-SSEEE
T ss_pred eecCChHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchh---hcccCccccccccccCCCHHHHHHHHHhcc-CCeEE
Confidence 78999999999999887432 1 22334433211110 011122211111234799999999999986 47999
Q ss_pred EEcCCCCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCcC
Q 003388 277 IQGPPGTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASPWLVGANPRDNIMPIDGDDGFFPT 356 (824)
Q Consensus 277 IqGPPGTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 356 (824)
|+||||||||+|++.++..++..
T Consensus 376 I~GppGTGKT~ti~~~i~~l~~~--------------------------------------------------------- 398 (800)
T 2wjy_A 376 IQGPPGTGKTVTSATIVYHLARQ--------------------------------------------------------- 398 (800)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTT---------------------------------------------------------
T ss_pred EEcCCCCCHHHHHHHHHHHHHHc---------------------------------------------------------
Confidence 99999999999999999877631
Q ss_pred CCCCCCccccccccccccEEEEEcCchhHHHHHHHHHHhcCCCccccccCCCcEEEEecCCC----cccccccHHHHHHH
Q 003388 357 TGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH----HSVNSVAIDHLVEQ 432 (824)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~g~~~~~~~~~~~~ivRig~~~~----~~~~~~sld~l~~~ 432 (824)
.+.+||+|||||.|+|++.+|+.+.|+ +++|+|.... ..+...+++.++..
T Consensus 399 ---------------~~~~ilv~a~tn~A~~~l~~~l~~~g~----------~vvRlg~~~r~~i~~~~~~~tlh~~~~~ 453 (800)
T 2wjy_A 399 ---------------GNGPVLVCAPSNIAVDQLTEKIHQTGL----------KVVRLCAKSREAIDSPVSFLALHNQIRN 453 (800)
T ss_dssp ---------------CSSCEEEEESSHHHHHHHHHHHHTTTC----------CEEECCCGGGGGCCCTTGGGBHHHHHHT
T ss_pred ---------------CCCcEEEEcCcHHHHHHHHHHHHHhCc----------ceEeecccchhhhcchhhhhhHHHHHHc
Confidence 135999999999999999999987654 5899997643 23445667665542
Q ss_pred HHhhhH---HH--hhhcCCCh--------hhHHHHHHHHhcCCcEEEEcCccchhhHHhhcCCCcCEEEEcCCCCCCchh
Q 003388 433 KRDDSA---AD--KQKHGATR--------KDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPA 499 (824)
Q Consensus 433 ~l~~~~---~~--~~~~~~~~--------~~~~~~~~~il~~a~IV~sTls~s~~~~~~~~~~~fd~vIIDEAsq~~e~~ 499 (824)
.-.... .. ....+... .....+...+++.++||++|+++++...+. ...||+||||||+|+++|+
T Consensus 454 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~--~~~fd~viIDEAsQ~~e~~ 531 (800)
T 2wjy_A 454 MDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLA--KMQFRSILIDESTQATEPE 531 (800)
T ss_dssp CTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTT--TCCCSEEEETTGGGSCHHH
T ss_pred CccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhCChhhh--cCCCCEEEEECCCCCCcHH
Confidence 100000 00 00000000 111234567899999999999988765543 3479999999999999999
Q ss_pred hHhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCcccccccccChhhhhccchhhccccccCCC
Q 003388 500 TLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGS 579 (824)
Q Consensus 500 ~lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~L~~qYRm~p~I~~f~s~~fY~~~L~~~~ 579 (824)
+|+|+..+++++||||||+||||++.+..+...|++.|+|+||...+.+.++|++||||||+|++|+|..||+|+|.++.
T Consensus 532 ~li~l~~~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~ 611 (800)
T 2wjy_A 532 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV 611 (800)
T ss_dssp HHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESS
T ss_pred HHHHHHhcCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCC
Confidence 99999988899999999999999999998888999999999999888888999999999999999999999999998876
Q ss_pred Ccccccc----cCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCcHHH
Q 003388 580 DVEDYTT----RDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQ 655 (824)
Q Consensus 580 ~~~~~~~----~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~~~~~~~IgIItpY~~Q 655 (824)
....+.. .+|+. ...|+.|+++ .|.+.....+.|+.|..||+.|.+++..|...+ ....+|||||||++|
T Consensus 612 ~~~~r~~~~~~~~~~~--~~~p~~f~~~-~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g---~~~~dIgVItPy~~Q 685 (800)
T 2wjy_A 612 TAADRVKKGFDFQWPQ--PDKPMFFYVT-QGQEEIASSGTSYLNRTEAANVEKITTKLLKAG---AKPDQIGIITPYEGQ 685 (800)
T ss_dssp CSGGGSCTTCCCCCSS--TTSCEEEEEC-CCCCEECSSBSCEECHHHHHHHHHHHHHHHHTT---CCGGGEEEECSCHHH
T ss_pred chhhhccccccccccC--CCCCEEEEEc-CCceeecCCCCcccCHHHHHHHHHHHHHHHHcC---CCcccEEEEeccHHH
Confidence 6543321 23432 3458999999 676665556779999999999999999998764 345799999999999
Q ss_pred HHHHHHHHhhhhCCC--CCcceEEecCCCCCCccccEEEEEeeecCCCCcccccCCCCeeEeeeecccceEEEEecCccc
Q 003388 656 VKQFQERFKETFGVE--SQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTL 733 (824)
Q Consensus 656 ~~~i~~~l~~~~~~~--~~~~v~V~TVd~fQG~E~diVIlS~vrs~~~~~igfl~d~rrlNVAlTRAk~~LiIvG~~~~L 733 (824)
+..|++.|.+..... ....+.|+|||+|||+|+|+||+|+||++..+++||+.|+||||||+||||++|+||||..+|
T Consensus 686 ~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l 765 (800)
T 2wjy_A 686 RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKAL 765 (800)
T ss_dssp HHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHH
T ss_pred HHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHh
Confidence 999999987532110 124689999999999999999999999988788999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHcCcEEEcC
Q 003388 734 REDKHWNNLVKSAEKQDCLFRVS 756 (824)
Q Consensus 734 ~~~~~w~~li~~~~~~~~~~~~~ 756 (824)
..++.|+.|+++++++|+++..+
T Consensus 766 ~~~~~w~~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 766 SKQPLWNHLLNYYKEQKVLVEGP 788 (800)
T ss_dssp TSSHHHHHHHHHHHHTTCEEESC
T ss_pred ccCHHHHHHHHHHHHCCCEEeCC
Confidence 99999999999999999998763
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-73 Score=688.80 Aligned_cols=583 Identities=29% Similarity=0.400 Sum_probs=422.8
Q ss_pred cccccccccccCCHHHHHHHchHHHHHHHHHHHHHhhhhccccceeeeEeeeecccCCeEEEEEEeec--CcccCCCCCc
Q 003388 48 KLGLREVKDTYKDVDDYLATFEPLLFEEVKAQIIQKKDEEEVQEWKLRLVMECGEADGFHLPSVTYEA--DEVESISPND 125 (824)
Q Consensus 48 ~~~~~~Vp~~F~s~~~Y~~~f~pLlleE~~aql~~~~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~--~~~~~~~~gD 125 (824)
..++.+||.+|.|+.+|.++|.||+..|.+++... .+... ..... +.-....++.+.+.|.... .....+..||
T Consensus 174 ~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD 249 (802)
T 2xzl_A 174 QEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQL--KESQA-LEHIS-VSWSLALNNRHLASFTLSTFESNELKVAIGD 249 (802)
T ss_dssp ----CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHH--HCCC---CCBC-EEEEECTTSCEEEEEC---------CCCTTC
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHhhhhh--hhHhh-ccCce-EeeeccCCCeEEEEEEecccccCCCCCCCCC
Confidence 45789999999999999999999999999876542 11111 00111 1111223456666665543 3346789999
Q ss_pred EEEEeccCccCCCCCCceEEEEEEEeecC---ceEEEEEeeccccccccccccchhhhhhhhhccccccccccceEEEEE
Q 003388 126 LLLLSKEEFKEGSTFPTTYAFALVEHCQA---NLLRLRMYLAGEVIHINKDAVKSQRLLNIHSLITSSVSAVEKRLFSLK 202 (824)
Q Consensus 126 lvlls~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 202 (824)
.|+|+...+.. +.....|+|..+.+ ..+.+.+..... .+. . .....+.+..
T Consensus 250 ~v~l~~~~~~~----~~~~~~g~V~~v~~~~~~~v~v~~~~~~~-------~~p----------~-----~~~~~~~v~~ 303 (802)
T 2xzl_A 250 EMILWYSGMQH----PDWEGRGYIVRLPNSFQDTFTLELKPSKT-------PPP----------T-----HLTTGFTAEF 303 (802)
T ss_dssp EEEEEECSSSS----SCEEEEEEEEECCC---CCEEEEECCCSS-------CCC----------T-----TCCSSEEEEE
T ss_pred EEEEEECCCCC----CceeEEEEEEEECCCCCCEEEEEEeCCCC-------CCc----------c-----ccCCCeEEEE
Confidence 99999765432 12334577777653 334444421100 000 0 0112355677
Q ss_pred ecChhhHHHHHHHHHhcCC--CC----ccccccccccCCCCCCCCCcccCcchhhhhccCCCHHHHHHHHHhhcCCCeEE
Q 003388 203 ICSLSTIAREYLALRSVGS--LP----FKDLILSASEKSSGSQDQSWKIPGLLHEYIKENHNASQLEAIHEGLLRKAFVL 276 (824)
Q Consensus 203 l~~~~t~~Re~~aL~~~~~--~~----~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~sQ~~AI~~~l~~~~~~L 276 (824)
+.+.+|+.|++.||..+.. .. +.+.++....+... ....+|..........||++|++||..++. .++++
T Consensus 304 ~~~~~~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~---~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~-~~~~l 379 (802)
T 2xzl_A 304 IWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDIS---FDVPLPKEFSIPNFAQLNSSQSNAVSHVLQ-RPLSL 379 (802)
T ss_dssp CCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCCC---CCCCCCSCCSCTTSCCCCHHHHHHHHHHTT-CSEEE
T ss_pred EecCchHHHHHHHHHHHHhccccchhHHHHHhcCCcccccc---ccccCcccccccccccCCHHHHHHHHHHhc-CCCEE
Confidence 8899999999999998842 22 23445543222111 001122211111235799999999999986 57999
Q ss_pred EEcCCCCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccCCCCcccCCCCCCCCCCCCCCCCCCcC
Q 003388 277 IQGPPGTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASPWLVGANPRDNIMPIDGDDGFFPT 356 (824)
Q Consensus 277 IqGPPGTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 356 (824)
|+||||||||+|++.++..++..
T Consensus 380 I~GppGTGKT~~i~~~i~~l~~~--------------------------------------------------------- 402 (802)
T 2xzl_A 380 IQGPPGTGKTVTSATIVYHLSKI--------------------------------------------------------- 402 (802)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred EECCCCCCHHHHHHHHHHHHHhC---------------------------------------------------------
Confidence 99999999999999999877641
Q ss_pred CCCCCCccccccccccccEEEEEcCchhHHHHHHHHHHhcCCCccccccCCCcEEEEecCCC----cccccccHHHHHHH
Q 003388 357 TGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRIGLKAH----HSVNSVAIDHLVEQ 432 (824)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~g~~~~~~~~~~~~ivRig~~~~----~~~~~~sld~l~~~ 432 (824)
.+.+||+|||||.|+|+|.+||.+.|+ +++|+|.... ..+...+++.++..
T Consensus 403 ---------------~~~~ILv~a~tn~A~d~l~~rL~~~g~----------~ilR~g~~~r~~i~~~~~~~tl~~~~~~ 457 (802)
T 2xzl_A 403 ---------------HKDRILVCAPSNVAVDHLAAKLRDLGL----------KVVRLTAKSREDVESSVSNLALHNLVGR 457 (802)
T ss_dssp ---------------HCCCEEEEESSHHHHHHHHHHHHHTTC----------CEEECCCGGGTTSCCTTGGGBHHHHHHT
T ss_pred ---------------CCCeEEEEcCcHHHHHHHHHHHHhhCc----------cEEeecccchhhhcchhhhhhHHHHHHh
Confidence 135999999999999999999987653 5899997533 33556677766542
Q ss_pred HHhh----hHHHhhhcCCC--------hhhHHHHHHHHhcCCcEEEEcCccchhhHHhhcCCCcCEEEEcCCCCCCchhh
Q 003388 433 KRDD----SAADKQKHGAT--------RKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAAQAVEPAT 500 (824)
Q Consensus 433 ~l~~----~~~~~~~~~~~--------~~~~~~~~~~il~~a~IV~sTls~s~~~~~~~~~~~fd~vIIDEAsq~~e~~~ 500 (824)
.... ........+.. ..........+++.++||++|+++++...+ ...||+||||||+|+++++.
T Consensus 458 ~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L---~~~fd~viIDEA~q~~e~~~ 534 (802)
T 2xzl_A 458 GAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRL---DTKFRTVLIDESTQASEPEC 534 (802)
T ss_dssp TCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTC---CSCCSEEEETTGGGSCHHHH
T ss_pred hcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcChHHH---hccCCEEEEECccccchHHH
Confidence 1000 00000000000 001122346789999999999988775443 33899999999999999999
Q ss_pred HhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCcccccccccChhhhhccchhhccccccCCCC
Q 003388 501 LVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSREFYDEALEDGSD 580 (824)
Q Consensus 501 lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~L~~qYRm~p~I~~f~s~~fY~~~L~~~~~ 580 (824)
|+|+..+++++||||||+||||++.+..+...+++.|+|+|+...+...++|++||||||+|++|+|..||+|+|.++..
T Consensus 535 li~l~~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~ 614 (802)
T 2xzl_A 535 LIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVT 614 (802)
T ss_dssp HHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSC
T ss_pred HHHHHhCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCc
Confidence 99998888999999999999999999888889999999999998888889999999999999999999999999988766
Q ss_pred cccccc----cCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCcHHHH
Q 003388 581 VEDYTT----RDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQV 656 (824)
Q Consensus 581 ~~~~~~----~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~~~~~~~IgIItpY~~Q~ 656 (824)
...+.. .+|+. ...|+.|+++ .|.+.....+.|+.|..||+.|.+++..|...+ ....+|||||||++|+
T Consensus 615 ~~~r~~~~~~~~~~~--~~~p~~f~~~-~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g---~~~~~IgVItpy~~Q~ 688 (802)
T 2xzl_A 615 IEQRTVPNSKFPWPI--RGIPMMFWAN-YGREEISANGTSFLNRIEAMNCERIITKLFRDG---VKPEQIGVITPYEGQR 688 (802)
T ss_dssp TTTTCCTTCCCCCSS--TTCCEEEEEC-CCCCEECTTSSSEECHHHHHHHHHHHHHHHHTT---CCGGGEEEEESCHHHH
T ss_pred hhhhccccccCCCCC--CCCCEEEEEc-CCceeecCCCCCcCCHHHHHHHHHHHHHHHHcC---CCcccEEEEcccHHHH
Confidence 543321 23432 3458999998 677666566779999999999999999998754 3467999999999999
Q ss_pred HHHHHHHhhhhC--CCCCcceEEecCCCCCCccccEEEEEeeecCCCCcccccCCCCeeEeeeecccceEEEEecCcccc
Q 003388 657 KQFQERFKETFG--VESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLR 734 (824)
Q Consensus 657 ~~i~~~l~~~~~--~~~~~~v~V~TVd~fQG~E~diVIlS~vrs~~~~~igfl~d~rrlNVAlTRAk~~LiIvG~~~~L~ 734 (824)
..|++.|..... ......+.|+|||+|||+|+|+||+|+||++..+.+||+.++||||||+||||++||||||..+|+
T Consensus 689 ~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~ 768 (802)
T 2xzl_A 689 AYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLA 768 (802)
T ss_dssp HHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHT
T ss_pred HHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhc
Confidence 999999975311 011235899999999999999999999999987889999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCcEEEc
Q 003388 735 EDKHWNNLVKSAEKQDCLFRV 755 (824)
Q Consensus 735 ~~~~w~~li~~~~~~~~~~~~ 755 (824)
.++.|+.|+++++++|+++..
T Consensus 769 ~~~~w~~ll~~~~~~~~~~~~ 789 (802)
T 2xzl_A 769 RNTLWNHLLIHFREKGCLVEG 789 (802)
T ss_dssp TSHHHHHHHHHHHHHTCEEEE
T ss_pred cChHHHHHHHHHHHcCCeecC
Confidence 999999999999999999875
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.96 E-value=5.9e-29 Score=290.92 Aligned_cols=290 Identities=17% Similarity=0.183 Sum_probs=190.8
Q ss_pred ccCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccCCCC
Q 003388 254 KENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASP 333 (824)
Q Consensus 254 ~~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (824)
...||+.|++|+..++. .++++|+||||||||+|+..++..+..
T Consensus 187 ~~~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~~l~~~l~~----------------------------------- 230 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTKAVADLAES----------------------------------- 230 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHHHHHHHHHH-----------------------------------
T ss_pred cCCCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHHHHHHHHHh-----------------------------------
Confidence 45799999999999886 479999999999999999998866543
Q ss_pred cccCCCCCCCCCCCCCCCCCCcCCCCCCCccccccccccccEEEEEcCchhHHHHHHHHHHhcCCCccccccCCCcEEEE
Q 003388 334 WLVGANPRDNIMPIDGDDGFFPTTGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKIVRI 413 (824)
Q Consensus 334 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~g~~~~~~~~~~~~ivRi 413 (824)
.+.+|++||||+.|++++.+++. .
T Consensus 231 --------------------------------------~g~~Vl~~ApT~~Aa~~L~e~~~---~--------------- 254 (574)
T 3e1s_A 231 --------------------------------------LGLEVGLCAPTGKAARRLGEVTG---R--------------- 254 (574)
T ss_dssp --------------------------------------TTCCEEEEESSHHHHHHHHHHHT---S---------------
T ss_pred --------------------------------------cCCeEEEecCcHHHHHHhHhhhc---c---------------
Confidence 13589999999999999987651 1
Q ss_pred ecCCCcccccccHHHHHHHHHhhhHHHhhhcCCChhhHHHHHHHHhcCCcEEEEcCccchhhHHhhcCCCcCEEEEcCCC
Q 003388 414 GLKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAA 493 (824)
Q Consensus 414 g~~~~~~~~~~sld~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~a~IV~sTls~s~~~~~~~~~~~fd~vIIDEAs 493 (824)
...+++.++.. . . + .... .......+|+||||||+
T Consensus 255 --------~a~Tih~ll~~-----------------------------~---~-~--~~~~--~~~~~~~~dvlIIDEas 289 (574)
T 3e1s_A 255 --------TASTVHRLLGY-----------------------------G---P-Q--GFRH--NHLEPAPYDLLIVDEVS 289 (574)
T ss_dssp --------CEEEHHHHTTE-----------------------------E---T-T--EESC--SSSSCCSCSEEEECCGG
T ss_pred --------cHHHHHHHHcC-----------------------------C---c-c--hhhh--hhcccccCCEEEEcCcc
Confidence 11233332110 0 0 0 0000 00112368999999999
Q ss_pred CCCchh--hHhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCcccccccccC--hhhhhccchh
Q 003388 494 QAVEPA--TLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMH--PEVRSFPSRE 569 (824)
Q Consensus 494 q~~e~~--~lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~L~~qYRm~--p~I~~f~s~~ 569 (824)
|+.... .|+.......++|+|||+.||||+.. .+.|..+.. ..+++.|+++||++ +.|..+++.
T Consensus 290 ml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~-~~~~~~L~~~~R~~~~s~I~~~a~~- 357 (574)
T 3e1s_A 290 MMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDA----------GLPLLALAQ-AAPTIKLTQVYRQAAKNPIIQAAHG- 357 (574)
T ss_dssp GCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSS----------CCHHHHHHH-HSCEEECCCCCHHHHTCHHHHHHHH-
T ss_pred CCCHHHHHHHHHhCcCCCEEEEEecccccCCccC----------CcHHHHHHh-cCCEEEcceeEeCCCccHHHHHHHH-
Confidence 986553 23333446689999999999999743 245666666 57899999999998 679988766
Q ss_pred hccccccCCCCcccccccCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHHhCCCCCCCCeEEEE
Q 003388 570 FYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQLKSSSQLAII 649 (824)
Q Consensus 570 fY~~~L~~~~~~~~~~~~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~~~~~~~IgII 649 (824)
+..|.+.... ..+.|+.. ...+ ..+..+.+++. .. ....++.|+
T Consensus 358 i~~g~~~~~~----------------~d~~~~~~-~~~~------------~~~~~i~~~~~----~~---~~~~~~~VL 401 (574)
T 3e1s_A 358 LLHGEAPAWG----------------DKRLNLTE-IEPD------------GGARRVALMVR----EL---GGPGAVQVL 401 (574)
T ss_dssp HHTTCCCCCC----------------BTTEEEEE-CCST------------TCHHHHHHHHH----HT---TSGGGCEEE
T ss_pred HhCCCCcccC----------------CCeEEEeC-CCHH------------HHHHHHHHHHh----cc---CcccCeEEE
Confidence 4444332110 12345544 1111 01233333333 21 123678888
Q ss_pred cCcHHH---HHHHHHHHhhhhCCCC---------------------------------------Ccce------------
Q 003388 650 SPYRHQ---VKQFQERFKETFGVES---------------------------------------QKVV------------ 675 (824)
Q Consensus 650 tpY~~Q---~~~i~~~l~~~~~~~~---------------------------------------~~~v------------ 675 (824)
||.+.. +..|...+++.++... ...+
T Consensus 402 ~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~v~fdg~~v~~~ 481 (574)
T 3e1s_A 402 TPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVELT 481 (574)
T ss_dssp ESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEEEEETTEEEEEC
T ss_pred EeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEEEEECCeEEEEc
Confidence 887654 4555444444331100 0001
Q ss_pred ----------EEecCCCCCCccccEEEEEeeecCCCCcccccCCCCeeEeeeecccceEEEEecCccc
Q 003388 676 ----------DITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTL 733 (824)
Q Consensus 676 ----------~V~TVd~fQG~E~diVIlS~vrs~~~~~igfl~d~rrlNVAlTRAk~~LiIvG~~~~L 733 (824)
.+.|||++||+|+|.||+.+.... ..+.+++++|||+||||+.|+|+|+...|
T Consensus 482 ~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l 544 (574)
T 3e1s_A 482 GAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAW 544 (574)
T ss_dssp GGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHH
T ss_pred hHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHH
Confidence 135999999999999999876542 34567899999999999999999998755
No 6
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.95 E-value=4.8e-27 Score=280.60 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=103.6
Q ss_pred CCcCEEEEcCCCCCCchhh--HhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHc--CCCCcccccccc
Q 003388 482 HGFDVVIIDEAAQAVEPAT--LVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRA--GYPVKMLKTQYR 557 (824)
Q Consensus 482 ~~fd~vIIDEAsq~~e~~~--lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~--~~~~~~L~~qYR 557 (824)
..|++|+|||+++++..+. +..|...++++++|||++| ......|-+...|.++... +...+.|++|||
T Consensus 212 ~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~Q-------sIy~frga~~~~~~~~~~~~~~~~~~~L~~nyR 284 (647)
T 3lfu_A 212 ERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQ-------SIYGWRGAQVENIQRFLNDFPGAETIRLEQNYR 284 (647)
T ss_dssp HHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGG-------CCCGGGTCCTTHHHHHHHHCTTCEEEEECBCSS
T ss_pred hhCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchh-------hhccccCCCHHHHHHHHHhCCCCeEEEcccCCC
Confidence 4699999999999876653 3344445689999999999 2233456677888887664 234688999999
Q ss_pred cChhhhhccchhhccccccCCCCcccccccCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHHhC
Q 003388 558 MHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMY 637 (824)
Q Consensus 558 m~p~I~~f~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~~~ 637 (824)
|++.|..++|..|+.+...... ..|.......++.++.. .....|++.|+..+..++..+
T Consensus 285 s~~~I~~~~n~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------------~~~~~e~~~ia~~I~~l~~~g 344 (647)
T 3lfu_A 285 STSNILSAANALIENNNGRLGK-------KLWTDGADGEPISLYCA-------------FNELDEARFVVNRIKTWQDNG 344 (647)
T ss_dssp SCHHHHHHHHHHHTTCSSCCCC-------CCBCSSCCCCCEEEEEE-------------EEHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcccccCC-------ccccCCCCCCceEEEec-------------CChHHHHHHHHHHHHHHHHcC
Confidence 9999999999999875432211 11222111224444443 114569999999999988753
Q ss_pred CCCCCCCeEEEEcCcHHHHHHHHH
Q 003388 638 PQLKSSSQLAIISPYRHQVKQFQE 661 (824)
Q Consensus 638 ~~~~~~~~IgIItpY~~Q~~~i~~ 661 (824)
...++|+||++++.|...|..
T Consensus 345 ---~~~~diaVL~r~~~~~~~l~~ 365 (647)
T 3lfu_A 345 ---GALAECAILYRSNAQSRVLEE 365 (647)
T ss_dssp ---CCGGGEEEEESSGGGHHHHHH
T ss_pred ---CCccCEEEEEeCchhHHHHHH
Confidence 356899999998776544443
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.93 E-value=5.7e-26 Score=260.18 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=119.1
Q ss_pred cCCCHHHHHHHHHhhcC----CCeEEEEcCCCCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccC
Q 003388 255 ENHNASQLEAIHEGLLR----KAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGR 330 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~----~~~~LIqGPPGTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (824)
..||+.|++|+..++.. .++++|+||||||||+++..++..+...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~------------------------------- 72 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST------------------------------- 72 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-------------------------------
Confidence 46999999999986543 5699999999999999999998877641
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCcCCCCCCCccccccccccccEEEEEcCchhHHHHHHHHHHhcCCCccccccCCCcE
Q 003388 331 ASPWLVGANPRDNIMPIDGDDGFFPTTGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNTGIRDENIRSYTPKI 410 (824)
Q Consensus 331 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~g~~~~~~~~~~~~i 410 (824)
...+|+++||||.|++++..++ +.
T Consensus 73 -----------------------------------------~~~~il~~a~T~~Aa~~l~~~~---~~------------ 96 (459)
T 3upu_A 73 -----------------------------------------GETGIILAAPTHAAKKILSKLS---GK------------ 96 (459)
T ss_dssp -----------------------------------------TCCCEEEEESSHHHHHHHHHHH---SS------------
T ss_pred -----------------------------------------CCceEEEecCcHHHHHHHHhhh---cc------------
Confidence 0138999999999999999886 11
Q ss_pred EEEecCCCcccccccHHHHHHHHHhhhHHHhhhcCCChhhHHHHHHHHhcCCcEEEEcCccchhhHHhhcCCCcCEEEEc
Q 003388 411 VRIGLKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIID 490 (824)
Q Consensus 411 vRig~~~~~~~~~~sld~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~a~IV~sTls~s~~~~~~~~~~~fd~vIID 490 (824)
...+++.+...... .... ...+... . ......+++||||
T Consensus 97 -----------~~~T~h~~~~~~~~----------------------~~~~-~~~~~~~---~----~~~~~~~~~iiiD 135 (459)
T 3upu_A 97 -----------EASTIHSILKINPV----------------------TYEE-NVLFEQK---E----VPDLAKCRVLICD 135 (459)
T ss_dssp -----------CEEEHHHHHTEEEE----------------------ECSS-CEEEEEC---S----CCCCSSCSEEEES
T ss_pred -----------chhhHHHHhccCcc----------------------cccc-cchhccc---c----cccccCCCEEEEE
Confidence 11233332210000 0000 0011110 0 1112468999999
Q ss_pred CCCCCCchh--hHhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCcccccccccChhhhhccch
Q 003388 491 EAAQAVEPA--TLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHPEVRSFPSR 568 (824)
Q Consensus 491 EAsq~~e~~--~lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~L~~qYRm~p~I~~f~s~ 568 (824)
||+++.... .|..+.....++++|||+.||||+........ + ..++. ..+.+++.|+.+||+++.|..+++.
T Consensus 136 E~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~--l-~~~~~---~~~~~~~~L~~~~R~~~~I~~~a~~ 209 (459)
T 3upu_A 136 EVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAY--I-SPFFT---HKDFYQCELTEVKRSNAPIIDVATD 209 (459)
T ss_dssp CGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCC--C-CGGGT---CTTEEEEECCCCCCCCCHHHHHHHH
T ss_pred CchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchHh--H-HHHHh---cCCCcEEeceeeeeCCcHHHHHHHH
Confidence 999975432 22233335679999999999999865321100 1 11121 1245678999999999999999998
Q ss_pred hhc
Q 003388 569 EFY 571 (824)
Q Consensus 569 ~fY 571 (824)
...
T Consensus 210 lr~ 212 (459)
T 3upu_A 210 VRN 212 (459)
T ss_dssp HHT
T ss_pred HHc
Confidence 643
No 8
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.92 E-value=6.6e-25 Score=259.12 Aligned_cols=342 Identities=18% Similarity=0.201 Sum_probs=174.9
Q ss_pred CHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccCCCCcccC
Q 003388 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASPWLVG 337 (824)
Q Consensus 258 N~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 337 (824)
++.|+.||..++. .++++|+||||||||+|+..++..+....
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~------------------------------------- 192 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMA------------------------------------- 192 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTC-------------------------------------
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhh-------------------------------------
Confidence 6889999999996 47999999999999999999998776410
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCccccccccccccEEEEEcCchhHHHHHHHHHHhc----CCCccccccCCCcEEEE
Q 003388 338 ANPRDNIMPIDGDDGFFPTTGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNT----GIRDENIRSYTPKIVRI 413 (824)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~----g~~~~~~~~~~~~ivRi 413 (824)
...+.+|++||||+.|++.+.+.+... ++... .+-
T Consensus 193 --------------------------------~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~---------~~~ 231 (608)
T 1w36_D 193 --------------------------------DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE---------QKK 231 (608)
T ss_dssp --------------------------------SSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSC---------CCC
T ss_pred --------------------------------hcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHH---------HHh
Confidence 001358999999999999998876431 11000 000
Q ss_pred ecCCCcccccccHHHHHHHHHhhhHHHhhhcCCChhhHHHHHHHHhcCCcEEEEcCccchhhHHhhcCCCcCEEEEcCCC
Q 003388 414 GLKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSKLNHGFDVVIIDEAA 493 (824)
Q Consensus 414 g~~~~~~~~~~sld~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~a~IV~sTls~s~~~~~~~~~~~fd~vIIDEAs 493 (824)
+. .....+++.++.. +...............+|+||||||+
T Consensus 232 ~~----~~~~~Tih~ll~~-----------------------------------~~~~~~~~~~~~~~l~~d~lIIDEAs 272 (608)
T 1w36_D 232 RI----PEDASTLHRLLGA-----------------------------------QPGSQRLRHHAGNPLHLDVLVVDEAS 272 (608)
T ss_dssp SC----SCCCBTTTSCC----------------------------------------------CTTSCCSCSEEEECSGG
T ss_pred cc----chhhhhhHhhhcc-----------------------------------CCCchHHHhccCCCCCCCEEEEechh
Confidence 00 0001111111100 00000000000112368999999999
Q ss_pred CCCchh--hHhhhhccCceEEEEcCCCCCCceeeChh------hhhcCCcCcHHHHHHHcC-----------CC-----C
Q 003388 494 QAVEPA--TLVPLATGCKQVFLVGDPVQLPATVISPV------AEHLGYGTSLFKRLQRAG-----------YP-----V 549 (824)
Q Consensus 494 q~~e~~--~lipL~~~~~k~VLVGD~~QLpP~v~s~~------~~~~~~~~SLferl~~~~-----------~~-----~ 549 (824)
|+..+. .|+.......++||+||+.||||+..... ....|++.++++++.+.. .+ +
T Consensus 273 ml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 352 (608)
T 1w36_D 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 (608)
T ss_dssp GCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCSTTTTHHHHTTE
T ss_pred hCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCcccccccccccccccccE
Confidence 987653 34444456689999999999999864431 124678889999987531 11 5
Q ss_pred cccccccccChh--hhhccchhhccccccC-------C-CCcccc---cc-----------cCcCcc---------C---
Q 003388 550 KMLKTQYRMHPE--VRSFPSREFYDEALED-------G-SDVEDY---TT-----------RDWHEY---------R--- 593 (824)
Q Consensus 550 ~~L~~qYRm~p~--I~~f~s~~fY~~~L~~-------~-~~~~~~---~~-----------~~~~~~---------~--- 593 (824)
++|+++||+++. |..+.+. +..|.... . ...... .. ..|... +
T Consensus 353 ~~L~~~~R~~~~s~I~~la~~-i~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (608)
T 1w36_D 353 CLLQKSYRFGSDSGIGQLAAA-INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLI 431 (608)
T ss_dssp EECCCCCCSSCCTTHHHHHHH-HTSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHHHHHHHTCCCSSTT
T ss_pred EecceeeeeCCcchHHHHHHH-HhcCCchhHHHHhcCCCCceEEEecCChHHHHHHHHHHHHHHHHHHHHhhcccCHHHH
Confidence 789999999876 8888665 33332111 0 000000 00 000000 0
Q ss_pred --CCCCeEEEEc-CCCcccccCCCCCcccH---------------HHH-HHHHHHHHHHHHhCCCCCCCCeEEEEcCcHH
Q 003388 594 --CFGPFSFFDI-HEGKESQPAGSGSWINI---------------DEV-DFVLLLFHKLISMYPQLKSSSQLAIISPYRH 654 (824)
Q Consensus 594 --~~~p~~f~dv-~~g~e~~~~~~~S~~N~---------------~Ea-~~v~~lv~~L~~~~~~~~~~~~IgIItpY~~ 654 (824)
.+..+..+.. ..|... ....|. .+. -.+-+-+..+.+.+......++||+|++...
T Consensus 432 ~~~~~~~~vL~~~~~g~~g-----v~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~~~Nd~~~gl~NGdiG~V~~~~~ 506 (608)
T 1w36_D 432 IQAFNEYQLLCALREGPFG-----VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQ 506 (608)
T ss_dssp HHHHTTEEEEESCSSSSSS-----HHHHHHHHHGGGTSCC----------------------------------------
T ss_pred HHHHhhhhhhCCccCCchh-----HHHHHHHHHHHhCccCcccccccccccCCCeeeEeeechhhcccCCCeEEEEEcCC
Confidence 0011222211 111100 000010 000 0011112222222222345688999998742
Q ss_pred HHHHHHHHHhh------hhCC---CCCcceEEecCCCCCCccccEEEEEeeecCCCCcccccCCCCeeEeeeecccceEE
Q 003388 655 QVKQFQERFKE------TFGV---ESQKVVDITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITRAKSSIL 725 (824)
Q Consensus 655 Q~~~i~~~l~~------~~~~---~~~~~v~V~TVd~fQG~E~diVIlS~vrs~~~~~igfl~d~rrlNVAlTRAk~~Li 725 (824)
. ++-.|.. .+.. +......+.|||++||.|+|.||+....... ...+++.+|||+||||+.++
T Consensus 507 ~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~Yva~tRa~~~l~ 578 (608)
T 1w36_D 507 G---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTAVTRARRRLS 578 (608)
T ss_dssp -------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHHHHHHTTBSSCEE
T ss_pred e---EEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc-----chhhhhhHHhhhhhhhceEE
Confidence 2 2222210 0111 1234466889999999999999997654321 13477889999999999999
Q ss_pred EEecCc
Q 003388 726 VVGCAS 731 (824)
Q Consensus 726 IvG~~~ 731 (824)
|+|+..
T Consensus 579 l~~~~~ 584 (608)
T 1w36_D 579 LYADER 584 (608)
T ss_dssp EECCTT
T ss_pred EEECHH
Confidence 999875
No 9
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.91 E-value=2.6e-25 Score=268.34 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=101.9
Q ss_pred CCCcCEEEEcCCCCCCchhh-Hh-hhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHc--CCCCccccccc
Q 003388 481 NHGFDVVIIDEAAQAVEPAT-LV-PLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRA--GYPVKMLKTQY 556 (824)
Q Consensus 481 ~~~fd~vIIDEAsq~~e~~~-li-pL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~--~~~~~~L~~qY 556 (824)
...|++|+|||++++...+. ++ .|.....++++|||++|- .....|-+...|.++.+. +..++.|..||
T Consensus 214 ~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs-------IY~fRGA~~~~~~~f~~~~~~~~~i~L~~Ny 286 (724)
T 1pjr_A 214 QYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQS-------IYRWRGADIQNILSFERDYPNAKVILLEQNY 286 (724)
T ss_dssp HHHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGC-------CCGGGTCCTHHHHTHHHHSTTCEEEEECBCS
T ss_pred HhhCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhh-------cccccCCCHHHHHHHHHHCCCCcEEECCCCC
Confidence 35699999999999887763 33 334334689999999992 334455566667666553 23468999999
Q ss_pred ccChhhhhccchhhccccccCCCCcccccccCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHHh
Q 003388 557 RMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISM 636 (824)
Q Consensus 557 Rm~p~I~~f~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~~ 636 (824)
|+++.|..++|..|..+.-... ...|.......++.++.. .....|+..|+..+..++..
T Consensus 287 RSt~~Il~~an~li~~n~~~~~-------k~l~~~~~~g~~i~~~~~-------------~~~~~Ea~~va~~I~~l~~~ 346 (724)
T 1pjr_A 287 RSTKRILQAANEVIEHNVNRKP-------KRIWTENPEGKPILYYEA-------------MNEADEAQFVAGRIREAVER 346 (724)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCC-------CCCBCSSCCCCCEEEEEE-------------EEHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhCccccC-------cccccccCCCCceEEEec-------------CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999876532211 122332222234444443 11356899999888888752
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 003388 637 YPQLKSSSQLAIISPYRHQVKQFQERF 663 (824)
Q Consensus 637 ~~~~~~~~~IgIItpY~~Q~~~i~~~l 663 (824)
. ....++|+|+++.++|...|.+.|
T Consensus 347 ~--g~~~~diAIL~R~~~~~~~le~~L 371 (724)
T 1pjr_A 347 G--ERRYRDFAVLYRTNAQSRVMEEML 371 (724)
T ss_dssp T--SCCGGGEEEEESSGGGHHHHHHHH
T ss_pred c--CCChhheeeeeecchhHHHHHHHH
Confidence 1 134678999998877765554433
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=1.4e-23 Score=251.59 Aligned_cols=143 Identities=13% Similarity=0.053 Sum_probs=94.4
Q ss_pred cCCCcCEEEEcCCCCCCchhh--HhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHc--CCCCcccccc
Q 003388 480 LNHGFDVVIIDEAAQAVEPAT--LVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRA--GYPVKMLKTQ 555 (824)
Q Consensus 480 ~~~~fd~vIIDEAsq~~e~~~--lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~--~~~~~~L~~q 555 (824)
+...|++|+|||+++++..+. +-.|.....++++|||++| ......|-+...|.++... +...+.|..|
T Consensus 204 ~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vGD~~Q-------sIy~frga~~~~~~~~~~~~~~~~~~~L~~n 276 (673)
T 1uaa_A 204 WQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQ-------SIYSWRGARPQNLVLLSQDFPALKVIKLEQN 276 (673)
T ss_dssp HHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEECCGGG-------CCCGGGTBCTTHHHHHHHHSTTCEEECCCCB
T ss_pred HHhhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEeCchh-------hhhhccCCCHHHHHHHHHhCCCCeEEECCCC
Confidence 346899999999999877663 3334444578999999999 2233445566777777653 3446899999
Q ss_pred cccChhhhhccchhhccccccCCCCcccccccCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHH-
Q 003388 556 YRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLI- 634 (824)
Q Consensus 556 YRm~p~I~~f~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~- 634 (824)
||+++.|..+.|..|..+.-... ...|.......++.++.. . ....|++.|+..+..++
T Consensus 277 yRs~~~I~~~an~~~~~~~~~~~-------~~l~~~~~~g~~i~~~~~-~------------~~~~e~~~va~~I~~l~~ 336 (673)
T 1uaa_A 277 YRSSGRILKAANILIANNPHVFE-------KRLFSELGYGAELKVLSA-N------------NEEHEAERVTGELIAHHF 336 (673)
T ss_dssp SSSCHHHHHHHHHHHHTSCCSSC-------CCCCBSSCCCCCBEEEEC-S------------SHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhchhccc-------ccccccCCCCCCceEEec-C------------CHHHHHHHHHHHHHHHHh
Confidence 99999999999998876432111 111222111223444433 1 13568999999888887
Q ss_pred HhCCCCCCCCeEEEEcCc
Q 003388 635 SMYPQLKSSSQLAIISPY 652 (824)
Q Consensus 635 ~~~~~~~~~~~IgIItpY 652 (824)
..+ ...++|+||++.
T Consensus 337 ~~g---~~~~diaVL~r~ 351 (673)
T 1uaa_A 337 VNK---TQYKDYAILYRG 351 (673)
T ss_dssp HHC---CCTTTEEEEESS
T ss_pred ccC---CCccCEEEEEec
Confidence 332 345788888764
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.87 E-value=1.2e-21 Score=218.73 Aligned_cols=200 Identities=19% Similarity=0.193 Sum_probs=126.4
Q ss_pred CcCEEEEcCCCCCCchhh--HhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCcccccccccCh
Q 003388 483 GFDVVIIDEAAQAVEPAT--LVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRMHP 560 (824)
Q Consensus 483 ~fd~vIIDEAsq~~e~~~--lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~L~~qYRm~p 560 (824)
.+|+||||||+++..... ++.+ ..++++|++||++||||+...+. +.+..+ |.++. ...+..++.+|||++
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~-~~~~~vilvGD~~Qlp~v~~~~~---~~~~~~-~~~l~--~~~~~~~~~SyR~p~ 306 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEM-SLCDIAYVYGDTQQIPYINRVTG---FPYPAH-FAKLE--VDEVETRRTTLRCPA 306 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHH-TTCSEEEEEECTTSCCCCCCSTT---CCCCHH-HHSCC--CSEEEEECEESSCCH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHh-CCCCEEEEecCcccccCcccCCC---ccchhh-hhhcc--cCcEEEeeeEeCCCH
Confidence 489999999999753332 2233 35589999999999999865432 111111 22221 123567899999999
Q ss_pred hhhhccchhhccccccCCCCcccccccCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHHhCCCC
Q 003388 561 EVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLISMYPQL 640 (824)
Q Consensus 561 ~I~~f~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~~~~~~ 640 (824)
.++.|.+.. |++++.+.... ...+.+..+ .+..... . ..
T Consensus 307 dv~~lLs~l-Y~~~V~t~s~~-------------~~sv~~~~I-~~~~~~~--------~------------------~~ 345 (446)
T 3vkw_A 307 DVTHFLNQR-YEGHVMCTSSE-------------KKSVSQEMV-SGAASIN--------P------------------VS 345 (446)
T ss_dssp HHHHHHHTT-SSSCCEECCCC-------------CCCEEEEEC-CCGGGCC--------T------------------TT
T ss_pred HHHHHHHhh-cCCceEECCCc-------------CceEEEecc-ccccccc--------c------------------cc
Confidence 999999985 77655432111 123444455 2221110 0 00
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhhhhCCCCCcceE-EecCCCCCCccccEEEEEeeecCCCCcccccCCCCeeEeeeec
Q 003388 641 KSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVD-ITTVDGCQGREKDVAIFSCVRASDKKSIGFLADYRRMNVGITR 719 (824)
Q Consensus 641 ~~~~~IgIItpY~~Q~~~i~~~l~~~~~~~~~~~v~-V~TVd~fQG~E~diVIlS~vrs~~~~~igfl~d~rrlNVAlTR 719 (824)
.+..--|||+..+....+.++ ++. +.|||++||.|+|.|.+ ||.+......|..+..+++|||||
T Consensus 346 -~~~~g~iLtftq~~k~~L~~~-----------G~~~~~Tv~e~QG~tf~~Vtl--vr~~~~~~~l~~~~~~~~~VALTR 411 (446)
T 3vkw_A 346 -KPLKGKILTFTQSDKEALLSR-----------GYADVHTVHEVQGETYADVSL--VRLTPTPVSIIARDSPHVLVSLSR 411 (446)
T ss_dssp -SCCCSEEEESSHHHHHHHHTT-----------TCCSCEETGGGTTCCEEEEEE--EECCCSCCTTCSTTCHHHHHHHSS
T ss_pred -CCCCCeEEEcCHHHHHHHHHh-----------CCCCccCHHHcCCcccCeEEE--EECCCCCcccccCCccceEEEeec
Confidence 011225678777766665532 133 89999999999999887 555322223344578899999999
Q ss_pred ccceEEEEecCccccCCchHHHHHHHHHHc
Q 003388 720 AKSSILVVGCASTLREDKHWNNLVKSAEKQ 749 (824)
Q Consensus 720 Ak~~LiIvG~~~~L~~~~~w~~li~~~~~~ 749 (824)
||+.|.++.-. +..|-..|.++..-
T Consensus 412 h~~~L~~~tv~-----~D~~~~~i~~~~~~ 436 (446)
T 3vkw_A 412 HTKSLKYYTVV-----MDPLVSIIRDLERV 436 (446)
T ss_dssp EEEEEEEEESS-----CCHHHHHHHHHHHS
T ss_pred CCCEEEEEEec-----CChHHHHHHHhhhh
Confidence 99999998632 56677777776653
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.73 E-value=2.3e-18 Score=218.54 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=62.7
Q ss_pred CCcCEEEEcCCCCCCchhh-Hhhhhcc----CceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcC-------CCC
Q 003388 482 HGFDVVIIDEAAQAVEPAT-LVPLATG----CKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAG-------YPV 549 (824)
Q Consensus 482 ~~fd~vIIDEAsq~~e~~~-lipL~~~----~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~-------~~~ 549 (824)
..|++|+|||+++.+..+. ++-.... ...+++|||++| ......|-+..+|..+...- ...
T Consensus 399 ~~~~~IlVDEfQDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Q-------sIY~FRgAd~~~f~~~~~~~~~~~~~~~~~ 471 (1232)
T 3u4q_A 399 EQFHEVLVDEYQDTNLVQESILQLVTSGPEETGNLFMVGDVKQ-------SIYRFRLAEPLLFLSKYKRFTESGEGTGRK 471 (1232)
T ss_dssp HHCSEEEESSGGGCCHHHHHHHHHHSCSCTTSSCEEEEECGGG-------CCCTTTTCCTHHHHHHHHHSBSSCTTSCEE
T ss_pred hCCCEEEEEccccCCHHHHHHHHHHhcCCCCCCcEEEEeCchH-------HhHhccCCCHHHHHHHHHHhhhhcCCCCcE
Confidence 3599999999999887663 3333322 468999999999 33344566777887765431 145
Q ss_pred cccccccccChhhhhccchhhcc
Q 003388 550 KMLKTQYRMHPEVRSFPSREFYD 572 (824)
Q Consensus 550 ~~L~~qYRm~p~I~~f~s~~fY~ 572 (824)
+.|.+|||++++|..+.|..|-.
T Consensus 472 i~L~~NyRS~~~Il~~~n~lf~~ 494 (1232)
T 3u4q_A 472 IDLNKNFRSRADILDSTNFLFKQ 494 (1232)
T ss_dssp EEECEESSSCHHHHHHHHHHHHT
T ss_pred eECCCCCCCChHHHHHHHHHHhh
Confidence 78999999999999999998854
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.61 E-value=1.7e-15 Score=191.81 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=93.7
Q ss_pred CcCEEEEcCCCCCCchhh--Hhhhhc--cCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCccccccccc
Q 003388 483 GFDVVIIDEAAQAVEPAT--LVPLAT--GCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKMLKTQYRM 558 (824)
Q Consensus 483 ~fd~vIIDEAsq~~e~~~--lipL~~--~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~L~~qYRm 558 (824)
.|++|+|||+++....+. +-.|.. ....+++|||++| ......|-+...|.+........+.|.+|||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQ-------SIY~FRGAd~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQ-------AIYAFRGADIFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGG-------CCCGGGTCCHHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCcc-------ccccCcCCCHHHHHHHHHhcCCceeCCCCcCC
Confidence 499999999999877763 333432 2468999999999 22233333433444444433456889999999
Q ss_pred ChhhhhccchhhccccccCC-CCccccc--------ccCcCccC-CCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHH
Q 003388 559 HPEVRSFPSREFYDEALEDG-SDVEDYT--------TRDWHEYR-CFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLL 628 (824)
Q Consensus 559 ~p~I~~f~s~~fY~~~L~~~-~~~~~~~--------~~~~~~~~-~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~ 628 (824)
+++|.++.|..|-...-.-. ....... ...|.... ...++.++-. .+.. .+..-....|++.|+.
T Consensus 450 ~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~----~~~~~~~~~ea~~iA~ 524 (1180)
T 1w36_B 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLM-EGES----CGVGDYQSTMAQVCAA 524 (1180)
T ss_dssp CHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEEC-CSSC----CCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeec-CCCc----cCcchHHHHHHHHHHH
Confidence 99999999998854311000 0000000 00011000 0112333322 1100 0011123568889988
Q ss_pred HHHHHHHhCC------------CCCCCCeEEEEcCcHHHHHHHHHHH
Q 003388 629 LFHKLISMYP------------QLKSSSQLAIISPYRHQVKQFQERF 663 (824)
Q Consensus 629 lv~~L~~~~~------------~~~~~~~IgIItpY~~Q~~~i~~~l 663 (824)
.+..++.... .....++|+|+++-+.|...|.+.|
T Consensus 525 ~I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L 571 (1180)
T 1w36_B 525 QIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 (1180)
T ss_dssp HHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHH
Confidence 8888876410 1134578998887665555555444
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.39 E-value=6e-13 Score=131.72 Aligned_cols=144 Identities=14% Similarity=0.044 Sum_probs=99.1
Q ss_pred ccccccChhhhhccchhhccccccCCCCcccccccCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHH
Q 003388 553 KTQYRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHK 632 (824)
Q Consensus 553 ~~qYRm~p~I~~f~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~ 632 (824)
++|||++++|.+|+|.++.++. .. .+. .....+..++.. . ...+|+..|.+.+..
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~-----~~-----~~~--~~~G~~p~~~~~-~------------~~~~e~~~i~~~I~~ 56 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE-----AV-----TAF--DRQGDLPNVVVT-P------------NFEAGVDQVVDQLAM 56 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC--------------------CCCCCCEEEEE-S------------SHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCC-----cc-----cCC--CCCCCCCEEEEe-C------------CHHHHHHHHHHHHHH
Confidence 5799999999999998776442 00 000 001112223333 0 124688888888877
Q ss_pred HHHhCCCCCCCCeEEEEcCcHHHHHHHHHHHhhh-h-----CC---CCCcceEEecCCCCCCccccEEEEEeeecCCCCc
Q 003388 633 LISMYPQLKSSSQLAIISPYRHQVKQFQERFKET-F-----GV---ESQKVVDITTVDGCQGREKDVAIFSCVRASDKKS 703 (824)
Q Consensus 633 L~~~~~~~~~~~~IgIItpY~~Q~~~i~~~l~~~-~-----~~---~~~~~v~V~TVd~fQG~E~diVIlS~vrs~~~~~ 703 (824)
...+ ..+||||++.+.|...+.+.|... . +. .....|.|.|+|.+||.|+|.||+..+....
T Consensus 57 -~~~g-----~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~--- 127 (174)
T 3dmn_A 57 -NDSE-----RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN--- 127 (174)
T ss_dssp -HHHT-----TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT---
T ss_pred -hccC-----CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc---
Confidence 3332 579999999999999999999754 1 11 1234699999999999999999997654421
Q ss_pred ccccCCCCeeEeeeecccceEEEEecC
Q 003388 704 IGFLADYRRMNVGITRAKSSILVVGCA 730 (824)
Q Consensus 704 igfl~d~rrlNVAlTRAk~~LiIvG~~ 730 (824)
.....+.|+||||+||||+.|+|++..
T Consensus 128 ~~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 128 YQREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp SCSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred CCChhhhceeEEEecCcccEEEEEeCC
Confidence 112456789999999999999999864
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=98.83 E-value=2.2e-08 Score=126.90 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=89.7
Q ss_pred CEEEEcCCCCCCchhh--HhhhhccCceEE--EEcCCCCCCce-eeChhhhhcCCcCcHHHHHHH-cCCC---Ccccccc
Q 003388 485 DVVIIDEAAQAVEPAT--LVPLATGCKQVF--LVGDPVQLPAT-VISPVAEHLGYGTSLFKRLQR-AGYP---VKMLKTQ 555 (824)
Q Consensus 485 d~vIIDEAsq~~e~~~--lipL~~~~~k~V--LVGD~~QLpP~-v~s~~~~~~~~~~SLferl~~-~~~~---~~~L~~q 555 (824)
.+|+|||+++.+..+. +-.|...+++++ +|||+.+.+.. .........|-....|.++.. .+++ .+.|..|
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L~~n 282 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKELSGTE 282 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEECSCS
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhHHHHHHHHHHHHHHcCCCcccceecCCC
Confidence 7999999999887763 223343445544 66995442200 000112222222333444443 2344 5789999
Q ss_pred cccChhhhhccchhhccccccCCCCcccccccCcCccCCCCCeEEEEcCCCcccccCCCCCcccHHHHHHHHHHHHHHHH
Q 003388 556 YRMHPEVRSFPSREFYDEALEDGSDVEDYTTRDWHEYRCFGPFSFFDIHEGKESQPAGSGSWINIDEVDFVLLLFHKLIS 635 (824)
Q Consensus 556 YRm~p~I~~f~s~~fY~~~L~~~~~~~~~~~~~~~~~~~~~p~~f~dv~~g~e~~~~~~~S~~N~~Ea~~v~~lv~~L~~ 635 (824)
||+.+.|..+.+..+... + ...|.. ...++.++.. . ....|++.|+..+..++.
T Consensus 283 yRs~~~il~~i~~~~~~~-----~------~~~~~~--~~~~i~i~~~-~------------~~~~Ea~~ia~~I~~l~~ 336 (1166)
T 3u4q_B 283 RHTKTPELAHLEAQYEAR-----P------AIPYAE--KQEALTVMQA-A------------NRRAELEGIAREIHALVR 336 (1166)
T ss_dssp TTTTCHHHHHHHHSSSCS-----S------CCCCCS--CCSSEEEEEE-S------------SHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhHhhc-----C------CCccCC--CCCCeEEEEc-C------------ChHHHHHHHHHHHHHHHH
Confidence 999999988877654311 0 111221 1123444433 1 134699999999988887
Q ss_pred hCCCCCCCCeEEEEcCcH-HHHHHHHHHHh
Q 003388 636 MYPQLKSSSQLAIISPYR-HQVKQFQERFK 664 (824)
Q Consensus 636 ~~~~~~~~~~IgIItpY~-~Q~~~i~~~l~ 664 (824)
.. ....++|+|+++-+ .|...|...|.
T Consensus 337 ~~--g~~~~diAVL~R~~~~~~~~i~~~L~ 364 (1166)
T 3u4q_B 337 EK--GYRYKDVAILARQPEDYKDMVKEVFA 364 (1166)
T ss_dssp TS--CCCGGGEEEEESCGGGTHHHHHHHHH
T ss_pred hc--CCChhheEEEeCChHHHHHHHHHHHH
Confidence 32 23468999999997 48888888775
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.62 E-value=2.4e-07 Score=93.10 Aligned_cols=37 Identities=27% Similarity=0.151 Sum_probs=30.8
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~l 292 (824)
..+++.|.+|+..++..+ -++|++|+|||||.+.+..
T Consensus 22 ~~~~~~Q~~~i~~~~~~~-~~li~~~TGsGKT~~~~~~ 58 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK-DLIGQARTGTGKTLAFALP 58 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCC-CEEEECCCCChHHHHHHHH
Confidence 368999999999988754 5999999999999875443
No 17
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.62 E-value=3e-07 Score=95.23 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=32.0
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+|+...+... -.+|.||+|+|||.++..++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~-~~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS-EEEEEESSSTTHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCC-CEEEEeCCCCCHHHHHHHHH
Confidence 368999999999988754 59999999999999876654
No 18
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.51 E-value=1.1e-06 Score=88.35 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=29.5
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~ 290 (824)
..+++.|.+|+..++..+ -++|++|+|||||.+..
T Consensus 24 ~~~~~~Q~~~i~~~~~~~-~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGR-DILARAKNGTGKSGAYL 58 (206)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCSSSTTHHHHH
T ss_pred CCCCHHHHHHHHHHccCC-CEEEECCCCCchHHHHH
Confidence 368999999999988753 58999999999996544
No 19
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.49 E-value=5.9e-07 Score=91.56 Aligned_cols=35 Identities=40% Similarity=0.320 Sum_probs=29.7
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~ 290 (824)
..+++.|.+|+..++... -++|++|+|||||.+.+
T Consensus 35 ~~~~~~Q~~~i~~~~~~~-~~lv~~pTGsGKT~~~~ 69 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFS 69 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHH
Confidence 468999999999988754 58999999999998743
No 20
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.48 E-value=2.4e-07 Score=93.50 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+++.|.+|+..++.. .-++|+||+|||||.+.+..+..++.
T Consensus 33 ~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~ 74 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLD 74 (216)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999998865 46899999999999988877765553
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.47 E-value=9e-07 Score=96.60 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=34.6
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+++.|.+|+..++....-++|++|+|||||.+.+..+..+
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 468999999999998765689999999999998876554433
No 22
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.45 E-value=2e-06 Score=87.47 Aligned_cols=37 Identities=30% Similarity=0.301 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
.+++.|.+|+..++... -++|++|+|||||.+....+
T Consensus 36 ~~~~~Q~~~i~~~~~~~-~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp CCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC-CEEEECCCCCchhhhhhHHH
Confidence 58999999999988754 49999999999997655443
No 23
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.42 E-value=2.2e-06 Score=89.32 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=31.0
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+|+..++..+ -+++++|.|||||.+....+
T Consensus 64 ~~~~~~Q~~~i~~i~~~~-~~lv~a~TGsGKT~~~~~~i 101 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGR-DIIGLAETGSGKTGAFALPI 101 (249)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEEcCCCCCchhHhHHHH
Confidence 368999999999988754 58999999999998754433
No 24
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.42 E-value=1.2e-06 Score=90.48 Aligned_cols=36 Identities=36% Similarity=0.269 Sum_probs=29.9
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++.|.+|+..++... -++|++|+|||||.+.+.
T Consensus 51 ~~~~~~Q~~ai~~i~~~~-~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGY-DVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEECCCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHH
Confidence 358999999999988754 589999999999976443
No 25
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.40 E-value=1.8e-06 Score=88.27 Aligned_cols=36 Identities=25% Similarity=0.123 Sum_probs=30.1
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++.|.+|+..++..+ -++|++|.|||||.+...
T Consensus 41 ~~~~~~Q~~~i~~~~~~~-~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI-DLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHH
Confidence 468999999999988754 579999999999987543
No 26
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.40 E-value=2.9e-06 Score=87.27 Aligned_cols=38 Identities=29% Similarity=0.183 Sum_probs=31.3
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+|+..++..+ -++|++|+|||||.+.+..+
T Consensus 46 ~~~~~~Q~~~i~~~~~~~-~~li~a~TGsGKT~~~~~~~ 83 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGK-DVLGAAKTGSGKTLAFLVPV 83 (236)
T ss_dssp CBCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEEeCCCCcHHHHHHHHH
Confidence 468999999999988754 58999999999998755433
No 27
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.37 E-value=1.8e-06 Score=88.54 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~ 290 (824)
.+++.|.+|+..++... -++|++|.|||||.+.+
T Consensus 46 ~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGL-DLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp SCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHH
Confidence 58999999999988754 58999999999998743
No 28
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.35 E-value=3.2e-06 Score=88.75 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=30.2
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++-|.+|+..++..+ -++|+||.|||||.+.+.
T Consensus 75 ~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGR-DLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CBCCHHHHHHHHHHHHTC-CCEECCCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-cEEEEccCCCCchHHHHH
Confidence 358999999999988764 489999999999987443
No 29
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.35 E-value=5e-06 Score=85.95 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=35.2
Q ss_pred ccCcchhhhhc----cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 244 KIPGLLHEYIK----ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 244 ~~~~~~~~~~~----~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
.+++.+.+.+. ..+++.|.+|+..++... -+++++|.|||||.+.+.
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~-~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 35 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCcCHHHHHHHH
Confidence 35555544442 358999999999988754 589999999999987443
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.35 E-value=2.1e-06 Score=96.02 Aligned_cols=36 Identities=19% Similarity=0.096 Sum_probs=30.1
Q ss_pred hccCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHH
Q 003388 253 IKENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTI 289 (824)
Q Consensus 253 ~~~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti 289 (824)
+...+++.|.+|+..++..+ -++|++|.|||||.+.
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFG 53 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHH
Confidence 34568999999999998764 5899999999999843
No 31
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.33 E-value=2e-06 Score=91.13 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+++.|.+|+..++.. +-.+|.+|+|+|||.+.+.++...+
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999998875 4578899999999998877665443
No 32
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.32 E-value=3.3e-06 Score=93.67 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
.+++.|.+|+..++..+ -++|++|+|||||.+....+
T Consensus 43 ~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp SCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHH
Confidence 58999999999988764 48999999999997655443
No 33
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.31 E-value=5.4e-06 Score=86.20 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=31.0
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+|+..++... -+++++|.|||||.+.+..+
T Consensus 44 ~~~~~~Q~~~i~~i~~~~-~~l~~a~TGsGKT~~~~~~~ 81 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHR-DIMACAQTGSGKTAAFLIPI 81 (253)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHH
Confidence 358999999999988754 58999999999998755443
No 34
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.31 E-value=7.1e-07 Score=90.83 Aligned_cols=36 Identities=28% Similarity=0.196 Sum_probs=29.9
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++.|.+|+..++... -++|++|.|||||.+.+.
T Consensus 25 ~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE-SMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC-CEEEECCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHH
Confidence 358999999999988754 588999999999976443
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.29 E-value=4.6e-06 Score=89.89 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.2
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++.|.+|+...+.. .-++|++|+|+|||.+...
T Consensus 15 ~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~ 50 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAI 50 (337)
T ss_dssp CSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHH
Confidence 46899999999998865 4699999999999976543
No 36
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.28 E-value=5.6e-06 Score=91.22 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=32.3
Q ss_pred cCCCHHHHHHHHHhhcCC-CeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRK-AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~-~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+|+..++... .-++|++|+|||||.+....+
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 468999999999988752 568999999999998766544
No 37
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.25 E-value=7.1e-06 Score=90.48 Aligned_cols=38 Identities=32% Similarity=0.324 Sum_probs=31.0
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+|+..++... -++|++|+|+|||.+.+..+
T Consensus 29 ~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGM-DVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CSCCHHHHHHHHHHTTTC-CEEEECSSCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCC-cEEEECCCCCcHHHHHHHHH
Confidence 359999999999988754 58999999999997654443
No 38
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.22 E-value=6e-06 Score=94.04 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=32.0
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..|++.|.+|+...+.. +-.+|.||.|+|||.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~i~~~-~~~ll~~~TGsGKT~~~l~~i 129 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAI 129 (472)
T ss_dssp CCBCHHHHHHHHHHTTT-TEEEEECCTTSCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhc-CCEEEEeCCCCCHHHHHHHHH
Confidence 46899999999988865 459999999999999876654
No 39
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.21 E-value=5.4e-06 Score=85.74 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=30.1
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++.|.+|+..++..+ -+++++|.|||||.+.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l 85 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSI 85 (245)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHH
Confidence 358999999999988765 489999999999987433
No 40
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.21 E-value=7.9e-06 Score=90.99 Aligned_cols=38 Identities=34% Similarity=0.308 Sum_probs=31.3
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+|+...+..+ -++|++|.|||||.+....+
T Consensus 58 ~~~~~~Q~~ai~~i~~~~-~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEECCCCCCchHHHHHHH
Confidence 358999999999988754 48999999999998765443
No 41
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.20 E-value=7.6e-06 Score=91.02 Aligned_cols=38 Identities=34% Similarity=0.264 Sum_probs=31.5
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++.|.+||..++... -++|++|.|||||.+....+
T Consensus 61 ~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGY-DVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CSCCHHHHHHHHHHHTTC-CEEECCCSCSSSHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhCCC-CEEEECCCCCcccHHHHHHH
Confidence 468999999999988765 48999999999998755443
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.20 E-value=8.5e-06 Score=91.91 Aligned_cols=128 Identities=22% Similarity=0.190 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHhhCccccccCCCccccccCCCCCcccccccccCCCCcc
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILHATPARVHSKGGLREIKRGPELPMHEKYNHWGRASPWL 335 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (824)
.|.+.|.+|+..++.. -.+|.+|+|+|||.+.+.++..++..
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~------------------------------------ 50 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTK------------------------------------ 50 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHH------------------------------------
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhc------------------------------------
Confidence 6899999999998876 68999999999999888776655420
Q ss_pred cCCCCCCCCCCCCCCCCCCcCCCCCCCccccccccccccEEEEEcCchhHHHHHHHHHHhc-CCCccccccCCCcEEEEe
Q 003388 336 VGANPRDNIMPIDGDDGFFPTTGNELKPEVVNSSRRYRVRVLVCAPSNSALDEIVLRLLNT-GIRDENIRSYTPKIVRIG 414 (824)
Q Consensus 336 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rILv~ApSN~AvDei~~Rl~~~-g~~~~~~~~~~~~ivRig 414 (824)
.+.++||++|+.+.+++...++.+. +.. ..++..+.
T Consensus 51 ------------------------------------~~~~~liv~P~~~L~~q~~~~~~~~~~~~-------~~~v~~~~ 87 (494)
T 1wp9_A 51 ------------------------------------YGGKVLMLAPTKPLVLQHAESFRRLFNLP-------PEKIVALT 87 (494)
T ss_dssp ------------------------------------SCSCEEEECSSHHHHHHHHHHHHHHBCSC-------GGGEEEEC
T ss_pred ------------------------------------CCCeEEEEECCHHHHHHHHHHHHHHhCcc-------hhheEEee
Confidence 1358999999999999999888654 210 01222221
Q ss_pred cCCCcccccccHHHHHHHHHhhhHHHhhhcCCChhhHHHHHHHHhcCCcEEEEcCccchhhHHhh--cCCCcCEEEEcCC
Q 003388 415 LKAHHSVNSVAIDHLVEQKRDDSAADKQKHGATRKDRDSIRSAILNEAVIVCSTLSFSGSALLSK--LNHGFDVVIIDEA 492 (824)
Q Consensus 415 ~~~~~~~~~~sld~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~a~IV~sTls~s~~~~~~~--~~~~fd~vIIDEA 492 (824)
.... .. -+......++|+++|........... ....|++||||||
T Consensus 88 g~~~-------~~--------------------------~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 134 (494)
T 1wp9_A 88 GEKS-------PE--------------------------ERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEA 134 (494)
T ss_dssp SCSC-------HH--------------------------HHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETG
T ss_pred CCcc-------hh--------------------------hhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECC
Confidence 1100 00 01223346899999975433332211 1257999999999
Q ss_pred CCCCc
Q 003388 493 AQAVE 497 (824)
Q Consensus 493 sq~~e 497 (824)
..+..
T Consensus 135 H~~~~ 139 (494)
T 1wp9_A 135 HRAVG 139 (494)
T ss_dssp GGCST
T ss_pred cccCC
Confidence 98764
No 43
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.14 E-value=8.1e-06 Score=95.87 Aligned_cols=43 Identities=26% Similarity=0.193 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHhhc----CCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 256 NHNASQLEAIHEGLL----RKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~----~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+++.|.+||..++. ...-.||++|.|||||.+++.++..++.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHh
Confidence 689999999998775 3455799999999999998888877765
No 44
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.13 E-value=1e-05 Score=97.28 Aligned_cols=50 Identities=36% Similarity=0.496 Sum_probs=37.9
Q ss_pred ccCcchhhhhc----cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 244 KIPGLLHEYIK----ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 244 ~~~~~~~~~~~----~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
.+|+.+.+.+. ..+|+.|.+|+..++.....++|+||+|+|||.++...+
T Consensus 14 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 14 KLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp SSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHH
Confidence 34555555542 369999999999866556789999999999999875443
No 45
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.09 E-value=2.6e-05 Score=86.76 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=36.8
Q ss_pred cCcchhhhhc----cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH-HHHHHHH
Q 003388 245 IPGLLHEYIK----ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL-GLLSAIL 297 (824)
Q Consensus 245 ~~~~~~~~~~----~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~-~li~~ll 297 (824)
+++.+.+.+. ..+++.|.+||...+..+ -++|++|.|||||.+.+ .++..++
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~-~~lv~a~TGsGKT~~~~~~~l~~~~ 78 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIKEKR-DLMACAQTGSGKTAAFLLPILSQIY 78 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccCC-CEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4444444432 478999999999888654 58999999999998643 3444443
No 46
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.09 E-value=9.5e-06 Score=93.38 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=35.0
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..|++.|.+||..++.. .-.||.||.|+|||.+.+.++...+
T Consensus 112 ~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 37999999999998875 4689999999999999877665544
No 47
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.08 E-value=1.5e-05 Score=92.37 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+.+.|.+||..++... -++|.+|.|+|||.+....+...+.
T Consensus 7 ~~~~~Q~~~i~~~~~~~-~~l~~~~tGsGKT~~~~~~~~~~~~ 48 (556)
T 4a2p_A 7 KARSYQIELAQPAINGK-NALICAPTGSGKTFVSILICEHHFQ 48 (556)
T ss_dssp -CCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC-CEEEEcCCCChHHHHHHHHHHHHHH
Confidence 58899999999998754 4899999999999887666555443
No 48
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.08 E-value=1.1e-05 Score=89.12 Aligned_cols=36 Identities=39% Similarity=0.269 Sum_probs=30.2
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++.|.+|+...+... -++|++|+|+|||.+.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHH
Confidence 468999999999988764 588999999999977443
No 49
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.07 E-value=1e-05 Score=97.46 Aligned_cols=46 Identities=28% Similarity=0.372 Sum_probs=35.2
Q ss_pred cCcchhhhhc----cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH
Q 003388 245 IPGLLHEYIK----ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 245 ~~~~~~~~~~----~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~ 290 (824)
+|+.+.+.+. ..+|+.|.+|+..++....-++|+||.|+|||.+..
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAE 57 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHH
Confidence 4554554442 369999999999855556789999999999998763
No 50
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.05 E-value=1.9e-05 Score=87.64 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHHhhcC-CCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLR-KAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~-~~~~LIqGPPGTGKT~ti~~ 291 (824)
..+++.|.+|+..++.. ..-++|++|.|||||.+...
T Consensus 46 ~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~ 83 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83 (412)
T ss_dssp CSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHH
Confidence 46899999999999875 35799999999999987543
No 51
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.05 E-value=1.5e-05 Score=92.06 Aligned_cols=42 Identities=29% Similarity=0.227 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+.+.|.+||..++... -++|.+|.|+|||.+....+...+.
T Consensus 4 ~~~~~Q~~~i~~~~~~~-~~l~~~~tGsGKT~~~~~~~~~~~~ 45 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGK-NTIICAPTGCGKTFVSLLICEHHLK 45 (555)
T ss_dssp CCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCC-CEEEEeCCCChHHHHHHHHHHHHHH
Confidence 57899999999998754 5899999999999887666655543
No 52
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.02 E-value=6.6e-06 Score=96.24 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=52.0
Q ss_pred CcCEEEEcCCCCCCchhhHhhhhccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHc--CCCCccccccccc--
Q 003388 483 GFDVVIIDEAAQAVEPATLVPLATGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRA--GYPVKMLKTQYRM-- 558 (824)
Q Consensus 483 ~fd~vIIDEAsq~~e~~~lipL~~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~--~~~~~~L~~qYRm-- 558 (824)
..|+||||||+.+.- ..|--|.....+++|+..-++...| +.++--++... ......|++-.|-
T Consensus 255 ~~dlliVDEAAaIp~-pll~~ll~~~~~v~~~tTv~GYEGt-----------Grgf~lk~~~~L~~~~~~~L~~piR~a~ 322 (671)
T 2zpa_A 255 QADWLVVDEAAAIPA-PLLHQLVSRFPRTLLTTTVQGYEGT-----------GRGFLLKFCARFPHLHRFELQQPIRWAQ 322 (671)
T ss_dssp CCSEEEEETGGGSCH-HHHHHHHTTSSEEEEEEEBSSTTBB-----------CHHHHHHHHHTSTTCEEEECCSCSSSCT
T ss_pred cCCEEEEEchhcCCH-HHHHHHHhhCCeEEEEecCCcCCCc-----------CcccccccHhhcCCCcEEEccCceecCC
Confidence 589999999999853 3444555456789999888775433 33332333332 2456788888887
Q ss_pred Chhhhhccchhhc
Q 003388 559 HPEVRSFPSREFY 571 (824)
Q Consensus 559 ~p~I~~f~s~~fY 571 (824)
+..|-.|.+..+-
T Consensus 323 ~DplE~wl~~~ll 335 (671)
T 2zpa_A 323 GCPLEKMVSEALV 335 (671)
T ss_dssp TCHHHHHHHHHHT
T ss_pred CCCHHHHHHHhhC
Confidence 5589999888773
No 53
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.02 E-value=5.6e-06 Score=95.45 Aligned_cols=38 Identities=24% Similarity=0.127 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhhcC-CCeEEEEcCCCCChhhHHHHHH
Q 003388 256 NHNASQLEAIHEGLLR-KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~-~~~~LIqGPPGTGKT~ti~~li 293 (824)
.+++.|.+||..++.. ..-+||++|.|||||.+.+..+
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~i 179 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 179 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHH
Confidence 5889999999998875 4579999999999998755443
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.94 E-value=3.3e-05 Score=79.46 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+.|.+++...... ..++|.||.|||||+++...+.
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHh
Confidence 4678899999887764 5899999999999987766543
No 55
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.91 E-value=0.0001 Score=83.06 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=36.7
Q ss_pred cCcchhhhhc----cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH-HHHHHH
Q 003388 245 IPGLLHEYIK----ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG-LLSAIL 297 (824)
Q Consensus 245 ~~~~~~~~~~----~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~-li~~ll 297 (824)
+++.+.+.+. ..+++-|.+||..++..+ -+++++|.|||||.+.+. ++..++
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~-d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGR-DLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCCchHHHHHHHHHHHH
Confidence 4444444442 358999999999988754 589999999999986443 444443
No 56
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.91 E-value=4.4e-05 Score=92.91 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=34.3
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..+.+.|.+||..++... -++|.+|.|+|||.+....+...+.
T Consensus 247 ~~l~~~Q~~~i~~~l~~~-~~ll~~~TGsGKTl~~~~~i~~~l~ 289 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGK-NALICAPTGSGKTFVSILICEHHFQ 289 (797)
T ss_dssp -CCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCC-CEEEEeCCCChHHHHHHHHHHHHHH
Confidence 368999999999988754 5899999999999887666555543
No 57
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.90 E-value=6.4e-05 Score=94.11 Aligned_cols=37 Identities=19% Similarity=0.076 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~l 292 (824)
..+++-|.+||..++..+ -+||++|.|||||...+..
T Consensus 77 f~pt~iQ~~ai~~il~g~-dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 77 KDLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp SCCCHHHHHHHHHHTTTC-CEEECCSTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC-CEEEEeCCCCcHHHHHHHH
Confidence 468999999999998754 5899999999999844433
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.88 E-value=4.9e-05 Score=81.39 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=29.5
Q ss_pred cCCCHHHHHHHHHhhcC-CCeEEEEcCCCCChhhHH
Q 003388 255 ENHNASQLEAIHEGLLR-KAFVLIQGPPGTGKTQTI 289 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~-~~~~LIqGPPGTGKT~ti 289 (824)
..+++-|.+||..++.. ..-+++++|.|||||.+.
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 46899999999998875 246999999999999763
No 59
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.85 E-value=9.1e-05 Score=89.21 Aligned_cols=43 Identities=23% Similarity=0.103 Sum_probs=32.7
Q ss_pred hccCCCHHHHHHHHHhhcC-----CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 253 IKENHNASQLEAIHEGLLR-----KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 253 ~~~~lN~sQ~~AI~~~l~~-----~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+...+++.|.+||..++.. ..-.||+||.|||||.+....+..
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999987652 135899999999999876655433
No 60
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.81 E-value=8.6e-05 Score=86.43 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=30.7
Q ss_pred cCCCHHHHHHHHHhhcC-CCeEEEEcCCCCChhhHHHHH
Q 003388 255 ENHNASQLEAIHEGLLR-KAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~-~~~~LIqGPPGTGKT~ti~~l 292 (824)
..+++.|.+||..++.. ..-+|+++|.|||||.+.+..
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lp 131 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP 131 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHH
Confidence 35899999999998853 346899999999999864443
No 61
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.80 E-value=5.7e-05 Score=88.41 Aligned_cols=38 Identities=26% Similarity=0.192 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHHHhhcC-CCeEEEEcCCCCChhhHHHHH
Q 003388 255 ENHNASQLEAIHEGLLR-KAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~-~~~~LIqGPPGTGKT~ti~~l 292 (824)
..+++.|.+||..++.. ..-+++++|.|||||.+.+..
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lp 80 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIP 80 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHH
Confidence 35899999999998843 346899999999999864443
No 62
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.77 E-value=0.00015 Score=86.65 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=33.4
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+.+.|.+||..++... -++|.+|.|+|||.+....+...+
T Consensus 12 ~~lr~~Q~~~i~~~l~g~-~~iv~~~TGsGKTl~~~~~i~~~l 53 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGK-NTIICAPTGCGKTFVSLLICEHHL 53 (696)
T ss_dssp -CCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHHH
Confidence 368999999999998754 589999999999997666554444
No 63
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.73 E-value=1.9e-05 Score=94.61 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.|.+.|.+||..++... -+||.+|.|+|||.+....+..++.
T Consensus 7 ~l~~~Q~~~i~~il~g~-~~ll~~~TGsGKTl~~~~~i~~~l~ 48 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGK-NIIICLPTGCGKTRVAVYIAKDHLD 48 (699)
T ss_dssp CCCHHHHHHHHHHHSSC-CEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCC-CEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 58899999999999754 5999999999999988777665554
No 64
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.73 E-value=0.00019 Score=88.92 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=32.3
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..|++.|.+||...+.. .-++|.||.|+|||.+....+..
T Consensus 38 f~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~ 77 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAM 77 (997)
T ss_dssp SCCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHH
Confidence 46899999999998865 57999999999999865544433
No 65
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0002 Score=89.68 Aligned_cols=40 Identities=20% Similarity=-0.012 Sum_probs=32.2
Q ss_pred ccCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 254 KENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 254 ~~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
...+++.|.+||..++.. .-+||+||.|+|||.+....+.
T Consensus 182 ~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp SSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHH
Confidence 346999999999997764 4689999999999987654443
No 66
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.71 E-value=5.2e-05 Score=90.93 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~l 292 (824)
.||+.|.+|+...+. ..-++|+||+|+|||.++...
T Consensus 25 ~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHH
Confidence 689999999999665 567999999999999876443
No 67
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.70 E-value=0.0001 Score=86.36 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=28.5
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~t 288 (824)
..+++.|.+||..++..+ -+||.+|.|+|||.+
T Consensus 43 ~~~rp~Q~~~i~~il~g~-d~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK-EVFLVMPTGGGKSLC 75 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC-CEEEECCTTSCTTHH
T ss_pred CCCCHHHHHHHHHHHcCC-CEEEEECCCChHHHH
Confidence 368899999999999864 489999999999964
No 68
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.69 E-value=8.1e-05 Score=92.04 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=31.0
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+.+.|.+||..++... -++|.+|.|+|||.+.+..+
T Consensus 247 ~~~r~~Q~~ai~~il~g~-~~ll~a~TGsGKTl~~~~~i 284 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGK-NALICAPTGSGKTFVSILIC 284 (936)
T ss_dssp -CCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC-CEEEEeCCCchHHHHHHHHH
Confidence 368899999999998754 58999999999998765544
No 69
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.67 E-value=0.00011 Score=83.72 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=30.4
Q ss_pred cCCCHHHHHHHHHhhcC-CCeEEEEcCCCCChhhHHH
Q 003388 255 ENHNASQLEAIHEGLLR-KAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~-~~~~LIqGPPGTGKT~ti~ 290 (824)
..+++-|.+|+..++.. ..-+|++||.|||||.+.+
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH
Confidence 46899999999998874 3579999999999997643
No 70
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.65 E-value=0.00035 Score=87.96 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=31.3
Q ss_pred hccCCCHHHHHHHHHhhc----CC-CeEEEEcCCCCChhhHHHHH
Q 003388 253 IKENHNASQLEAIHEGLL----RK-AFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 253 ~~~~lN~sQ~~AI~~~l~----~~-~~~LIqGPPGTGKT~ti~~l 292 (824)
+...+++.|.+||..++. .. .-.||+||.|+|||.+.+..
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~a 644 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 644 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHH
Confidence 345689999999998875 22 26899999999999876543
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.64 E-value=0.00015 Score=89.97 Aligned_cols=44 Identities=27% Similarity=0.181 Sum_probs=36.5
Q ss_pred cCCCHHHHHHHHHhhcC-CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 255 ENHNASQLEAIHEGLLR-KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~-~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..|.+.|.+|+..++.. .+-.||.+|.|+|||.+.+.++..++.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~ 196 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLL 196 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 36899999999988864 346899999999999998888777654
No 72
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.62 E-value=0.00049 Score=80.00 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHhcCCcEEEEcCccchhhHHhh---cCCCcCEEEEcCCCCCCc
Q 003388 456 SAILNEAVIVCSTLSFSGSALLSK---LNHGFDVVIIDEAAQAVE 497 (824)
Q Consensus 456 ~~il~~a~IV~sTls~s~~~~~~~---~~~~fd~vIIDEAsq~~e 497 (824)
+.....|+||++|........... +....++||||||-++.+
T Consensus 143 r~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 143 LNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 456688999999986544432221 123568899999998765
No 73
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0003 Score=87.27 Aligned_cols=38 Identities=21% Similarity=-0.018 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..|++.|.+||...+.. .-+||++|.|+|||.+....+
T Consensus 85 f~L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp SCCCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHH
Confidence 35999999999997765 469999999999998764433
No 74
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.55 E-value=0.00014 Score=84.26 Aligned_cols=105 Identities=10% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEEcCcHHHHHHHHHHHhhhhCCCCCcceEE--------ecCCCCCCccccEEEEEe
Q 003388 624 DFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVVDI--------TTVDGCQGREKDVAIFSC 695 (824)
Q Consensus 624 ~~v~~lv~~L~~~~~~~~~~~~IgIItpY~~Q~~~i~~~l~~~~~~~~~~~v~V--------~TVd~fQG~E~diVIlS~ 695 (824)
..+.+.+..++... +..+-|+.|-....+.+.+.++.. .+.+ ..++.|+. + .-|+++.
T Consensus 370 ~~~~~~l~~~~~~~-----~g~~lvff~S~~~~~~v~~~l~~~-------~~~~q~~~~~~~~~l~~f~~-~-~~il~~V 435 (540)
T 2vl7_A 370 PIYSILLKRIYENS-----SKSVLVFFPSYEMLESVRIHLSGI-------PVIEENKKTRHEEVLELMKT-G-KYLVMLV 435 (540)
T ss_dssp HHHHHHHHHHHHTC-----SSEEEEEESCHHHHHHHHTTCTTS-------CEEESTTTCCHHHHHHHHHT-S-CCEEEEE
T ss_pred HHHHHHHHHHHHhC-----CCCEEEEeCCHHHHHHHHHHhccC-------ceEecCCCCcHHHHHHHHhc-C-CeEEEEE
Confidence 44555666666542 457888888887777777666431 1222 12333433 2 2345543
Q ss_pred eecCCCCcccccCCCCeeEeeeecccceEEEEecCccccCCchHHHHHHHHHHcC
Q 003388 696 VRASDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQD 750 (824)
Q Consensus 696 vrs~~~~~igfl~d~rrlNVAlTRAk~~LiIvG~~~~L~~~~~w~~li~~~~~~~ 750 (824)
.+..-..++.|-.+. |+=+++||+|=|-.-..++.++.-.++.++++
T Consensus 436 ~~~~~~EGiD~~~~~--------~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~ 482 (540)
T 2vl7_A 436 MRAKESEGVEFREKE--------NLFESLVLAGLPYPNVSDDMVRKRIERLSKLT 482 (540)
T ss_dssp C-----------------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHH
T ss_pred ecCceecceecCCCc--------ccccEEEEECCCCCCCCCHHHHHHHHHHHHhh
Confidence 444444566654431 23356777777655555777777777665543
No 75
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.54 E-value=0.0002 Score=82.66 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=28.1
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQT 288 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~t 288 (824)
..+.+.|.+||..++..+ -+||.+|.|+|||.+
T Consensus 24 ~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~ 56 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLC 56 (523)
T ss_dssp SSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHH
Confidence 368899999999998764 588999999999953
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.51 E-value=0.00045 Score=79.03 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=34.0
Q ss_pred hccCCCHHHHHHHHHhh---cCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 253 IKENHNASQLEAIHEGL---LRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 253 ~~~~lN~sQ~~AI~~~l---~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+...|.+.|.+||...+ ....=.+|.-|.|+|||-+++.++..+.
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~ 81 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAK 81 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 34578999999987543 2233477889999999999888776664
No 77
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.42 E-value=0.00076 Score=87.84 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=31.9
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~ 291 (824)
..||+-|.+|+...+..+.-++|.+|.|+|||.+..-
T Consensus 925 ~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp SBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHH
Confidence 4599999999999988777799999999999986543
No 78
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.40 E-value=0.00045 Score=85.52 Aligned_cols=38 Identities=24% Similarity=0.148 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhhcC-------------CCeEEEEcCCCCChhhHHHHHH
Q 003388 256 NHNASQLEAIHEGLLR-------------KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~-------------~~~~LIqGPPGTGKT~ti~~li 293 (824)
.+.+.|..||..++.. ..-.+|+.|.|||||.|++.++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~ 321 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA 321 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH
Confidence 4889999999987751 1347999999999999986665
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0008 Score=81.81 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=35.1
Q ss_pred cCCCHHHHHHHHHhh---cCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 255 ENHNASQLEAIHEGL---LRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l---~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..|-+.|++||...+ ....-.+|.-+.|+|||-++++++..++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~ 281 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIF 281 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHH
Confidence 468899999997543 23445789999999999999988877764
No 80
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.33 E-value=0.00049 Score=85.96 Aligned_cols=33 Identities=27% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~ 290 (824)
.+ +-|.+||..++.. .-++++||.|||||...+
T Consensus 57 ~p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl~~l 89 (1054)
T 1gku_B 57 PR-AIQKMWAKRILRK-ESFAATAPTGVGKTSFGL 89 (1054)
T ss_dssp CC-HHHHHHHHHHHTT-CCEECCCCBTSCSHHHHH
T ss_pred CH-HHHHHHHHHHHhC-CCEEEEcCCCCCHHHHHH
Confidence 37 9999999999875 468999999999996333
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.29 E-value=0.0014 Score=77.50 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=36.5
Q ss_pred hccCCCHHHHHHHHHhh--------cCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 253 IKENHNASQLEAIHEGL--------LRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 253 ~~~~lN~sQ~~AI~~~l--------~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
+...|-+.|.+||...+ ....=.|+.-+.|+|||-++++++..++.
T Consensus 52 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~ 105 (644)
T 1z3i_X 52 LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLK 105 (644)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHH
Confidence 45578999999998754 22334788899999999999999888765
No 82
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.23 E-value=0.00059 Score=82.38 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.5
Q ss_pred CHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHH
Q 003388 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 258 N~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...|.++|..++.....++|.||+|+|||+.+..+
T Consensus 95 ~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 95 VHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH
Confidence 45799999999887779999999999999955544
No 83
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.20 E-value=0.00049 Score=77.88 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=25.5
Q ss_pred HHHHhhcCCCeEEEEcCCCCChhhH-HHHHHHHHH
Q 003388 264 AIHEGLLRKAFVLIQGPPGTGKTQT-ILGLLSAIL 297 (824)
Q Consensus 264 AI~~~l~~~~~~LIqGPPGTGKT~t-i~~li~~ll 297 (824)
+|..++..+..++++||+|||||.+ +..++..++
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~ 45 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREAL 45 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHH
Confidence 4556676778899999999999995 555554443
No 84
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.18 E-value=0.00044 Score=78.52 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=30.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhhhhCCCC---CcceEEecCCCCCCccccEEEE
Q 003388 643 SSQLAIISPYRHQVKQFQERFKETFGVES---QKVVDITTVDGCQGREKDVAIF 693 (824)
Q Consensus 643 ~~~IgIItpY~~Q~~~i~~~l~~~~~~~~---~~~v~V~TVd~fQG~E~diVIl 693 (824)
..++-|.++.+.++..+.+.|+.. +... ...-.-...+.|...+.+|+|-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-g~~v~~lh~~~R~~~~~~f~~g~~~iLVa 242 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-GKKVIQLNRKSYDTEYPKCKNGDWDFVIT 242 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-TCCEEEESTTCCCCCGGGSSSCCCSEEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-CCcEEecCHHHHHHHHhhccCCCceEEEE
Confidence 356889999999999998888753 1100 0001123456677667776654
No 85
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.01 E-value=0.00079 Score=79.20 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=19.3
Q ss_pred cEEEEEcCchhHHHHHHHHHHh
Q 003388 374 VRVLVCAPSNSALDEIVLRLLN 395 (824)
Q Consensus 374 ~rILv~ApSN~AvDei~~Rl~~ 395 (824)
.++||++|+...+.++..++.+
T Consensus 258 ~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 258 YKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCEEEEESCHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHH
Confidence 4899999999999999888754
No 86
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.96 E-value=0.0019 Score=64.97 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+|.||.|+|||+.++.++....
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~ 53 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQ 53 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4889999999999999998876554
No 87
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.95 E-value=0.0023 Score=63.61 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+|.||+|+|||+.++.++..+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4899999999999999998876654
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.94 E-value=0.00067 Score=66.30 Aligned_cols=40 Identities=33% Similarity=0.316 Sum_probs=31.6
Q ss_pred CHHHHHHHHHhh--------cCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGL--------LRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l--------~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
++.|.+|+..+. .....++|.||||||||+++..+...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578888887654 2346799999999999999988877664
No 89
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=96.92 E-value=0.0029 Score=61.57 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=38.6
Q ss_pred cCEEEEcCCCCCCchhhHhhhh---ccCceEEEEcCCCCCCceeeChhhhhcCCcCcHHHHHHHcCCCCcc
Q 003388 484 FDVVIIDEAAQAVEPATLVPLA---TGCKQVFLVGDPVQLPATVISPVAEHLGYGTSLFKRLQRAGYPVKM 551 (824)
Q Consensus 484 fd~vIIDEAsq~~e~~~lipL~---~~~~k~VLVGD~~QLpP~v~s~~~~~~~~~~SLferl~~~~~~~~~ 551 (824)
=+++|||||.++.--+++..+. ....++||+||..|+.- .+-|.-|.+.|.+.+.
T Consensus 122 ~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~RqG~-------------GnAl~vl~~agv~t~~ 179 (189)
T 2l8b_A 122 GSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGT-------------GSALMAMKDAGVNTYR 179 (189)
T ss_dssp CCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESSTTTCS-------------HHHHHHHHHTTCCCCS
T ss_pred CCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCcccccC-------------CCHHHHHHhCCCceEE
Confidence 3699999999986555544442 23479999999988532 4567777777765443
No 90
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.70 E-value=0.0049 Score=73.03 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.9
Q ss_pred EEEEcCchhHHHHHHHHHHhcCC
Q 003388 376 VLVCAPSNSALDEIVLRLLNTGI 398 (824)
Q Consensus 376 ILv~ApSN~AvDei~~Rl~~~g~ 398 (824)
.++|+|+...+.++..++.+.|+
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~g~ 204 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAAGV 204 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTC
T ss_pred eEEEeCHHHHHHHHHHHHHhcCC
Confidence 48899999999999999977654
No 91
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.66 E-value=0.0068 Score=79.03 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=31.6
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~ 290 (824)
..||+-|.+++..++..+.-+||..|.|+|||.+..
T Consensus 78 ~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~ 113 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 113 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHH
Confidence 469999999999999876679999999999997643
No 92
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.60 E-value=0.0085 Score=66.99 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..++++.||||+|||||+..+...+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999886653
No 93
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.51 E-value=0.0025 Score=61.75 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 259 ASQLEAIHEGLLR--KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 259 ~sQ~~AI~~~l~~--~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
+.+.+.+...+.. ....+|.||||||||+++..+...+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455566555542 357899999999999999888776643
No 94
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0012 Score=70.85 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhc------CCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 259 ASQLEAIHEGLL------RKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 259 ~sQ~~AI~~~l~------~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
+.|.+.|...|. ..+..+|.||||||||.++..++..+-.
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456666554432 3567899999999999999999887754
No 95
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.50 E-value=0.024 Score=56.20 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=23.5
Q ss_pred HHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 265 IHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 265 I~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+..+-..++..+|.+++|+||||...++....+
T Consensus 21 ~~~~~~~~g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 21 VAQAQEERGIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp ------CCCCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred hhhccccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 333333578999999999999999999876554
No 96
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.49 E-value=0.0063 Score=72.15 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=22.2
Q ss_pred HHHHHhh-----cCCCeEEEEcCCCCChhhHH-HHHHHHH
Q 003388 263 EAIHEGL-----LRKAFVLIQGPPGTGKTQTI-LGLLSAI 296 (824)
Q Consensus 263 ~AI~~~l-----~~~~~~LIqGPPGTGKT~ti-~~li~~l 296 (824)
.||..++ ....-+||+||.|||||.+. ..++..+
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l 266 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDA 266 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHH
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 7776665 23568999999999999984 4444433
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.48 E-value=0.0016 Score=65.07 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
-.||.||||||||+++.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998887655
No 98
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.38 E-value=0.0023 Score=60.25 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=18.5
Q ss_pred cCCCeEEEEcCCCCChhhHHHHH
Q 003388 270 LRKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 270 ~~~~~~LIqGPPGTGKT~ti~~l 292 (824)
.....+||+||||||||+++..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHH
Confidence 34567999999999999877654
No 99
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.36 E-value=0.0034 Score=63.63 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhhc--CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLL--RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~--~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..|....+++..... .....+|.||||||||+++..+...+.
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 34 AGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp -CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345666666666554 356899999999999999888776654
No 100
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.35 E-value=0.0083 Score=70.50 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.7
Q ss_pred cEEEEEcCchhHHHHHHHHHH
Q 003388 374 VRVLVCAPSNSALDEIVLRLL 394 (824)
Q Consensus 374 ~rILv~ApSN~AvDei~~Rl~ 394 (824)
.++||++||.+.++++..++.
T Consensus 216 ~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 216 LRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCEEEEESSHHHHHHHHHHTT
T ss_pred CeEEEEcChHHHHHHHHHHhc
Confidence 589999999999999998763
No 101
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.27 E-value=0.0032 Score=60.91 Aligned_cols=39 Identities=31% Similarity=0.456 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 259 ASQLEAIHEGLLR--KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 259 ~sQ~~AI~~~l~~--~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+.+.+.+...+.. ....+|.||||||||+++..+...+.
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555554432 45789999999999999888876654
No 102
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.15 E-value=0.0047 Score=61.35 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhhcCC--CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGLLRK--AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l~~~--~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+...+++...+... +..+|.||||||||+++..+...+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 355666666665432 3599999999999998888776654
No 103
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.13 E-value=0.0043 Score=65.10 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
...-.||.||||||||+++..+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999988776543
No 104
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.08 E-value=0.015 Score=59.15 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
-+.+|.||.|+|||+.++.++...
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 489999999999999998887554
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.07 E-value=0.0023 Score=60.26 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.0
Q ss_pred CCCeEEEEcCCCCChhhHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~ 291 (824)
....+||+||||||||+++..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGG
T ss_pred CCCcEEEECCCCccHHHHHHH
Confidence 445699999999999986654
No 106
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.05 E-value=0.0048 Score=62.05 Aligned_cols=40 Identities=28% Similarity=0.303 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhhcC---CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGLLR---KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l~~---~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+.+.+...+.. .+..+|.||||||||+++..+...+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455556555543 24799999999999999888766553
No 107
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.95 E-value=0.0057 Score=60.67 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..++|+||||||||+++..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999998888776654
No 108
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.94 E-value=0.0073 Score=62.31 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
....||+||||||||+++..+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999988777554
No 109
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.94 E-value=0.0052 Score=65.08 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
....||.||||||||+++..+...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999887766543
No 110
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.0064 Score=65.80 Aligned_cols=40 Identities=33% Similarity=0.540 Sum_probs=29.4
Q ss_pred CHHHHHHHHHhhcCCCe--EEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGLLRKAF--VLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l~~~~~--~LIqGPPGTGKT~ti~~li~~ll 297 (824)
++...+.+...+....+ .++.||||||||+++..+...+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455555565654444 99999999999999988877664
No 111
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.87 E-value=0.012 Score=58.38 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+|.||.|+|||+-++..+....
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4899999999999988877776553
No 112
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.87 E-value=0.017 Score=57.99 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.||.|+|||+.++.++...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999888776544
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.73 E-value=0.0055 Score=58.15 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..|..+..++... .....+|.||||||||+++..+...+.
T Consensus 22 g~n~~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 22 TENAELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCTHHHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677777766655 456899999999999999888776553
No 114
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.68 E-value=0.0087 Score=63.21 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
....||.||||||||+++..+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999988776543
No 115
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.67 E-value=0.0061 Score=65.88 Aligned_cols=38 Identities=37% Similarity=0.626 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCC--CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 260 SQLEAIHEGLLRK--AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 260 sQ~~AI~~~l~~~--~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...+.+..++... +..||.||||||||+++..+...+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3445565555543 4599999999999999888776654
No 116
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.60 E-value=0.0064 Score=64.52 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
....|++||||||||+++..+...+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999887776554
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.55 E-value=0.0094 Score=65.01 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=29.8
Q ss_pred CHHHHHHHHHhh------cCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGL------LRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l------~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+.+.+...+ ...+.++|.||||||||+++..+...+.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 355666666554 2346799999999999999888876654
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.54 E-value=0.01 Score=63.64 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...+|+||||||||+++..+...+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4799999999999998888776654
No 119
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.53 E-value=0.0055 Score=65.97 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 260 SQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 260 sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
...+++..++...+..|+.||||||||+++..+..
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 34455555554456899999999999998877654
No 120
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.50 E-value=0.013 Score=62.95 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.-.||.||||||||+++..+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999988776544
No 121
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.0069 Score=67.68 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.=+|+.||||||||.++.++...+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh
Confidence 348999999999999888776543
No 122
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.41 E-value=0.012 Score=62.47 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=19.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
....+||.||||||||+++..+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 345799999999999998877654
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.40 E-value=0.01 Score=64.97 Aligned_cols=26 Identities=35% Similarity=0.277 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+..+|.||||||||+++..+...+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999988876654
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.37 E-value=0.018 Score=58.56 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=25.1
Q ss_pred HhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 267 EGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 267 ~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+....+++|.||||+|||+.+..++..++
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455567999999999999999888876654
No 125
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0077 Score=67.26 Aligned_cols=23 Identities=43% Similarity=0.691 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
=.|+.||||||||.++.++...+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999888876554
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.31 E-value=0.0098 Score=64.29 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..++|.|||||||||++..+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999998777665543
No 127
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.28 E-value=0.011 Score=61.31 Aligned_cols=25 Identities=36% Similarity=0.270 Sum_probs=19.5
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
......+||.||||||||+++..+.
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHH
Confidence 3345679999999999998776553
No 128
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.0085 Score=66.13 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
=+|+.||||||||.++.++...+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHhh
Confidence 38999999999999888776543
No 129
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.26 E-value=0.0094 Score=63.23 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+.+||.||||||||+++..+...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999888776554
No 130
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.23 E-value=0.014 Score=62.10 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 259 ASQLEAIHEGLLR--KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 259 ~sQ~~AI~~~l~~--~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+...+.+...+.. .+..||.||||||||+++..+...+.
T Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4455555555432 23699999999999999888876654
No 131
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.0089 Score=66.87 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.=+|+.||||||||.++.++...+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 348899999999999888876543
No 132
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.21 E-value=0.015 Score=62.43 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.-.||.||||||||+++..+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999988776644
No 133
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.19 E-value=0.019 Score=59.84 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=32.2
Q ss_pred hhhhc-cCCCHHHHHHHH-HhhcC----CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 250 HEYIK-ENHNASQLEAIH-EGLLR----KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 250 ~~~~~-~~lN~sQ~~AI~-~~l~~----~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+++ .++|+.+..+.. .-+.. +.-.+|.||||||||..+.+++..
T Consensus 76 ~~~l~~qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 76 YKILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34443 579999965544 33332 346999999999999988877653
No 134
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.18 E-value=0.017 Score=61.25 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhhcCC--CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGLLRK--AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l~~~--~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
++...+.+...+... +..||.||||||||+++..+...+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 456666676666532 3499999999999999888877664
No 135
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.16 E-value=0.013 Score=63.68 Aligned_cols=24 Identities=50% Similarity=0.812 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
...||.||||||||+++..+...+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999888776554
No 136
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.14 E-value=0.0065 Score=63.16 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
-.||.||||||||+++..+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999988877654
No 137
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.07 E-value=0.015 Score=63.47 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
....||.||||||||+++..+..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999997766543
No 138
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.06 E-value=0.015 Score=60.04 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.-++|.||||||||+++..+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999988776543
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.06 E-value=0.016 Score=63.01 Aligned_cols=39 Identities=31% Similarity=0.375 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhc------CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 259 ASQLEAIHEGLL------RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 259 ~sQ~~AI~~~l~------~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+.+.+.+...+. ....++|.||||||||+++..+...+-
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 556666665554 245899999999999999888776553
No 140
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.05 E-value=0.17 Score=59.11 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.|++.|+..+... ....+.+|.+|.|+|||++++.++...+
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~ 203 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFV 203 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHH
Confidence 6899999888754 2346899999999999999887665443
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.05 E-value=0.012 Score=62.46 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...||.||||||||+++..+...+-
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3599999999999998887766553
No 142
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.02 E-value=0.017 Score=62.98 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.-+||.||||||||+++..+...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 348999999999999888776543
No 143
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.00 E-value=0.016 Score=61.98 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
....+|+||||||||+++.++...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999998887766
No 144
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.012 Score=65.25 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.=+|+.||||||||.++.++...+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHHh
Confidence 348999999999999888776543
No 145
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.95 E-value=0.024 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+|.||||+|||+.+..++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999988876554
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.78 E-value=0.02 Score=60.98 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
...+||.||||||||+++..+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999988777544
No 147
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.77 E-value=0.015 Score=60.69 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
....||.||||||||+++..+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999988877654
No 148
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.013 Score=65.60 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..=.|+.||||||||.++.++...+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3448999999999999887776543
No 149
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.72 E-value=0.023 Score=57.67 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...+.+|.||||+|||+.+..++..+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356899999999999999998876654
No 150
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.71 E-value=0.016 Score=66.12 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.9
Q ss_pred HHHHHHHhhcCCCeEEEEcCCCCChhhHHHHH
Q 003388 261 QLEAIHEGLLRKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 261 Q~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~l 292 (824)
-.+++..++...+..||.||||||||+++..+
T Consensus 30 ~i~~l~~al~~~~~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 30 AIRLCLLAALSGESVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSSHHHHHHHG
T ss_pred HHHHHHHHHhcCCeeEeecCchHHHHHHHHHH
Confidence 34455555555678999999999999877665
No 151
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.70 E-value=0.02 Score=62.45 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
...+||.||||||||+++..+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999988776543
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.69 E-value=0.022 Score=61.89 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcC---CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 259 ASQLEAIHEGLLR---KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 259 ~sQ~~AI~~~l~~---~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+...+.+..++.. ....||.||||||||+++..+...+
T Consensus 22 ~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444432 2358999999999999988776554
No 153
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.69 E-value=0.016 Score=62.38 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
+.+||.||||||||+++..+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 469999999999999887764
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.66 E-value=0.018 Score=62.83 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.++|.||||||||+++..+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998776554
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.64 E-value=0.024 Score=65.18 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
...||.||||||||+++..+...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999888776543
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.025 Score=60.00 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 259 ASQLEAIHEGLLR--KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 259 ~sQ~~AI~~~l~~--~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+...+.+...+.. .+..||.||||||||+++..+...+.
T Consensus 27 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 4445555555543 23499999999999999888877664
No 157
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.63 E-value=0.018 Score=57.53 Aligned_cols=23 Identities=35% Similarity=0.772 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
-++||.||||||||+.++.++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999987765433
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.62 E-value=0.027 Score=62.11 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..-+||.||||||||+++..+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999887664
No 159
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.61 E-value=0.023 Score=64.11 Aligned_cols=24 Identities=46% Similarity=0.793 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.-.|+.||||||||+++.++...+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh
Confidence 469999999999999888776654
No 160
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.61 E-value=0.023 Score=60.73 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhhcC---CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 257 HNASQLEAIHEGLLR---KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 257 lN~sQ~~AI~~~l~~---~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.++...+.+...+.. ....|+.||||||||+++..+...
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 345666666666543 356788899999999988877544
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.56 E-value=0.026 Score=61.01 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=30.2
Q ss_pred CHHHHHHHHHhh-cC--CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGL-LR--KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l-~~--~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
++...+++..++ .. .+..+|.||||||||+++..+...++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 566677777766 43 23499999999999999888776664
No 162
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.51 E-value=0.031 Score=62.82 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.8
Q ss_pred cEEEEEcCchhHHHHHHHHHH
Q 003388 374 VRVLVCAPSNSALDEIVLRLL 394 (824)
Q Consensus 374 ~rILv~ApSN~AvDei~~Rl~ 394 (824)
.++||++||...+.++..++.
T Consensus 38 ~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 38 LRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp CCEEEEESSHHHHHHHHHHTT
T ss_pred CeEEEEcchHHHHHHHHHHHh
Confidence 589999999999999998875
No 163
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.50 E-value=0.028 Score=63.33 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.-.||.||||||||+++..+...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988776543
No 164
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.48 E-value=0.03 Score=62.94 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
...+|.||||||||+++..+...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999988877766543
No 165
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.46 E-value=0.017 Score=62.31 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+||.||||||||+++..+..
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 45699999999999998776654
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.41 E-value=0.054 Score=54.30 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=23.7
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+....+++|.||||+|||+++..++..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44456999999999999999988876554
No 167
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.34 E-value=0.018 Score=60.39 Aligned_cols=20 Identities=45% Similarity=0.773 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
++|.||||||||+++..+..
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999998776654
No 168
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.23 E-value=0.041 Score=62.30 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhc--CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 259 ASQLEAIHEGLL--RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 259 ~sQ~~AI~~~l~--~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+...+.+...+. ..+-.||.||||||||+++-++...+.
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 445555555553 345689999999999998888776654
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.20 E-value=0.021 Score=64.27 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
+.+||+||||||||+++..+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999987776543
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.14 E-value=0.021 Score=58.75 Aligned_cols=20 Identities=45% Similarity=0.797 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
++|.||||||||+++..+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999998876654
No 171
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.13 E-value=0.044 Score=61.39 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.8
Q ss_pred cEEEEEcCchhHHHHHHHHH
Q 003388 374 VRVLVCAPSNSALDEIVLRL 393 (824)
Q Consensus 374 ~rILv~ApSN~AvDei~~Rl 393 (824)
.++|+++||...++++...+
T Consensus 32 ~~~lvl~Pt~~La~Q~~~~~ 51 (431)
T 2v6i_A 32 LRTVILAPTRVVASEMYEAL 51 (431)
T ss_dssp CCEEEEESSHHHHHHHHHHT
T ss_pred CCEEEECcHHHHHHHHHHHh
Confidence 58999999999999988766
No 172
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.11 E-value=0.076 Score=62.33 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEEcCcHHHHHHHHHHHhhhhCCCCCcce---E-EecCCCCCCccccEEEEEeeec
Q 003388 623 VDFVLLLFHKLISMYPQLKSSSQLAIISPYRHQVKQFQERFKETFGVESQKVV---D-ITTVDGCQGREKDVAIFSCVRA 698 (824)
Q Consensus 623 a~~v~~lv~~L~~~~~~~~~~~~IgIItpY~~Q~~~i~~~l~~~~~~~~~~~v---~-V~TVd~fQG~E~diVIlS~vrs 698 (824)
...+.+.+..++... +..+.|+.|-......+.+.++ .+......+. . -.-++.|+ ....|+|+..+.
T Consensus 433 ~~~~~~~i~~l~~~~-----~g~~lvlF~Sy~~l~~v~~~l~-~~~~~~~q~~~~~~~~~ll~~f~--~~~~vL~~v~~g 504 (620)
T 4a15_A 433 LDRMATVIEDIILKV-----KKNTIVYFPSYSLMDRVENRVS-FEHMKEYRGIDQKELYSMLKKFR--RDHGTIFAVSGG 504 (620)
T ss_dssp HHHHHHHHHHHHHHH-----CSCEEEEESCHHHHHHHTSSCC-SCCEECCTTCCSHHHHHHHHHHT--TSCCEEEEETTS
T ss_pred HHHHHHHHHHHHHhC-----CCCEEEEeCCHHHHHHHHHHHH-hcchhccCCCChhHHHHHHHHhc--cCCcEEEEEecC
Confidence 445566666666653 3457777776666666555554 1110000000 0 01123344 345677776666
Q ss_pred CCCCcccccCCCCeeEeeeecccceEEEEecCccccCCchHHHHHHHHHHcC
Q 003388 699 SDKKSIGFLADYRRMNVGITRAKSSILVVGCASTLREDKHWNNLVKSAEKQD 750 (824)
Q Consensus 699 ~~~~~igfl~d~rrlNVAlTRAk~~LiIvG~~~~L~~~~~w~~li~~~~~~~ 750 (824)
.-..++.|-.+. =++++|+|=+-- ..++.++...+++++++
T Consensus 505 sf~EGiD~~g~~----------l~~viI~~lPfp-~~~p~~~ar~~~~~~~~ 545 (620)
T 4a15_A 505 RLSEGINFPGNE----------LEMIILAGLPFP-RPDAINRSLFDYYERKY 545 (620)
T ss_dssp CC--------CC----------CCEEEESSCCCC-CCCHHHHHHHHHHHHHH
T ss_pred ceeccccCCCCc----------eEEEEEEcCCCC-CCCHHHHHHHHHHHHhh
Confidence 555677776542 234555554422 23567777777766643
No 173
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.08 E-value=0.032 Score=59.48 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=19.0
Q ss_pred cCCCeEEEEcCCCCChhhHHHHHH
Q 003388 270 LRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 270 ~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
.....+||.||||||||+++..+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHH
Confidence 345679999999999998766553
No 174
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.98 E-value=0.074 Score=59.47 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+.+|.||||+|||||+..+...+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987654
No 175
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.95 E-value=0.095 Score=56.00 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 264 AIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 264 AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+...+....+++|.|+||+|||+.+..++..+.
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445677778999999999999998888775543
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.90 E-value=0.045 Score=59.01 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
...|+.||||||||+++..+...++.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhC
Confidence 35999999999999999988877753
No 177
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.87 E-value=0.034 Score=53.08 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+.+|.||||+||||++..+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999877766543
No 178
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.86 E-value=0.053 Score=60.43 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhhc-CCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLL-RKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~-~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+...+..++...+. ..++++|.||.|+|||||+..++..+
T Consensus 150 g~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 456677777776654 35799999999999999999887654
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.83 E-value=0.074 Score=53.99 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=23.7
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
++....+++|.|+||+|||+.+..++...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556799999999999999988876543
No 180
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=93.77 E-value=0.11 Score=62.08 Aligned_cols=32 Identities=22% Similarity=-0.041 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTIL 290 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~ 290 (824)
...+-|..++-..+..+ +.+.+.|||||-+.+
T Consensus 83 ~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~ 114 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTST 114 (844)
T ss_dssp CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHH
T ss_pred CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHH
Confidence 56899999999888654 899999999996433
No 181
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.69 E-value=0.031 Score=61.23 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
....||.||||||||+++..+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999887766543
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.64 E-value=0.035 Score=61.11 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.5
Q ss_pred CCCeEEE--EcCCCCChhhHHHHHHHHH
Q 003388 271 RKAFVLI--QGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 271 ~~~~~LI--qGPPGTGKT~ti~~li~~l 296 (824)
..+..+| .||||||||+++..+...+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3457899 9999999999988877654
No 183
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.62 E-value=0.03 Score=58.59 Aligned_cols=20 Identities=45% Similarity=0.797 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
++|.||||||||+++..+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 89999999999998877654
No 184
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.60 E-value=0.058 Score=57.79 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 259 ASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 259 ~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+.+.+.+.. +.. ++++|.||+|+|||+.+..+...
T Consensus 19 ~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 19 EKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp HHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHh
Confidence 556777777 765 79999999999999998877654
No 185
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.52 E-value=0.036 Score=52.79 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCChhhHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~l 292 (824)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47889999999999977665
No 186
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.49 E-value=0.038 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+.+|.||||+||||.+..+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999987776543
No 187
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.48 E-value=0.048 Score=53.91 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+.+|.||||+||||++..+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999987776544
No 188
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.41 E-value=0.07 Score=60.70 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..-+||+||||||||+++..+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHH
Confidence 3459999999999999777664
No 189
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.37 E-value=0.056 Score=57.84 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 259 ASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 259 ~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
+.+.+.+..++...++++|.||+|+|||+.+..+..
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHH
Confidence 455666666665457999999999999998887653
No 190
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.34 E-value=0.042 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=17.7
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
+.+|.||||+||||.+..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999998776643
No 191
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.32 E-value=0.047 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+.+|.||||+||||.+..|...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999777665443
No 192
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.30 E-value=0.043 Score=52.88 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+|.||||+||||+...+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999997776643
No 193
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.27 E-value=0.045 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+.+|.||||+||||.+..|...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999998777765543
No 194
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.20 E-value=0.074 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.||||+||||++..+...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988776543
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.10 E-value=0.076 Score=57.78 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=24.5
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+....+++|.||||+|||+.+..++..+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455567999999999999999888876553
No 196
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=93.09 E-value=0.31 Score=58.23 Aligned_cols=32 Identities=28% Similarity=0.071 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTI 289 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti 289 (824)
....+-|..++...+..+ +.+.+.|||||-+.
T Consensus 73 ~~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf 104 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC---IAEMRTGEGKTLTA 104 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE---EEECCTTSCHHHHH
T ss_pred CCCChHHHhhcccccCCe---eeeecCCchHHHHH
Confidence 457899999999887643 89999999998543
No 197
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.08 E-value=0.053 Score=62.03 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+++.+..-+..++.....++|.||+|+|||||+..++.
T Consensus 244 ~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 244 TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 378888888888777767899999999999999987653
No 198
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.06 E-value=0.077 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..++.|+||+||||+.+.+...+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3788999999999999998877654
No 199
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.05 E-value=0.064 Score=51.89 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+.+|.||||+||||.+..+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999977766543
No 200
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.03 E-value=0.062 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
...+|.||||+||||+...+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999877766543
No 201
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.88 E-value=0.055 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
.+..|.||||+||||++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999998765543
No 202
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.86 E-value=0.046 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+++|.||||+||||++..+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999776653
No 203
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.82 E-value=0.05 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+.+|.||||+||||....+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999877666543
No 204
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.77 E-value=0.19 Score=54.20 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=27.9
Q ss_pred HHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 263 EAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 263 ~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+..++....+++|-|+||+|||+.+..++..+.
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455677778999999999999999988876554
No 205
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.76 E-value=0.069 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+..+.+|.||||+||||++..+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999977766543
No 206
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.68 E-value=0.065 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+.+|.|||||||||.+..|...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999887765443
No 207
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.66 E-value=0.066 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+.+|.||||+||||.+..|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999977766544
No 208
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.66 E-value=0.095 Score=63.08 Aligned_cols=39 Identities=31% Similarity=0.469 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhc--CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 259 ASQLEAIHEGLL--RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 259 ~sQ~~AI~~~l~--~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+...+.+...+. ..+-.||.||||||||+++-++...+.
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 555556665553 345689999999999998877766653
No 209
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.63 E-value=0.062 Score=54.29 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=21.2
Q ss_pred HhhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 267 EGLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 267 ~~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+.+..+.+|.||||+||||....|...
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33445568899999999999876665543
No 210
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=92.63 E-value=0.15 Score=61.13 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTI 289 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti 289 (824)
....+-|..++-..+..+ +.+.+.|||||-+.
T Consensus 110 ~rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~ 141 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLGN---VAEMKTGEGKTLTC 141 (922)
T ss_dssp CCCCHHHHHHHHHHHTTE---EEECCTTSCHHHHT
T ss_pred CCCCHHHHHHHHhHhcCC---EEEecCCCccHHHH
Confidence 367899999999877543 99999999998543
No 211
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.61 E-value=0.07 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+.|.||+|+||||++..+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887666543
No 212
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.53 E-value=0.095 Score=58.62 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
+-.|+.||||||||+++..+..
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999997766543
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.50 E-value=0.051 Score=55.04 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=23.9
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+....+++|.||||+|||+++..++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45556799999999999999998887543
No 214
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.50 E-value=0.071 Score=62.40 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 259 ASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 259 ~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..-.+.+..++.....++|.||||||||+++..+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 444566666666667899999999999987776643
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.38 E-value=0.064 Score=60.70 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
-+||.||||||||+++..+...
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999988776553
No 216
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.37 E-value=0.18 Score=56.68 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 262 LEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 262 ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...+...+....+++|-||||+|||+.+..++..+.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455666778999999999999999988876654
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.33 E-value=0.078 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+.+|.||||+||||+...+...
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999977766543
No 218
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.28 E-value=0.09 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..++.|.||||+||||++..+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999887766543
No 219
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.26 E-value=0.081 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.|||||||||+...+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999977665543
No 220
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.25 E-value=0.068 Score=57.12 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=21.6
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+-....++|.||||||||+.+..+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 334457899999999999988887654
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.13 E-value=0.084 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=22.6
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+....+++|.||||+|||+.+..++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344567999999999999999888765
No 222
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.13 E-value=0.08 Score=52.27 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.||||+||||++..|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999877766543
No 223
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.12 E-value=0.085 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
-+.+|.||||+||||....|...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999977666543
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.04 E-value=0.11 Score=54.74 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 263 EAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 263 ~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+...+....+++|.||||+|||+.+..++..+.
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34445566667999999999999999888876654
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.03 E-value=0.094 Score=53.27 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=24.2
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+....++.|.||+|+||||++..++...+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455567999999999999999988875443
No 226
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.02 E-value=0.086 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=18.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+.+|.|||||||||....|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6789999999999988777544
No 227
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.01 E-value=0.093 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
++.+|.||||+||||+...+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999987766543
No 228
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.97 E-value=0.093 Score=50.38 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+|.||||+||||++..+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999997766543
No 229
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.96 E-value=0.084 Score=51.49 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=17.7
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
+++|.||||+||||++..+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68899999999999888774
No 230
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.95 E-value=0.093 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+..|.||||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999887766544
No 231
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.93 E-value=0.089 Score=50.64 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+|.|||||||||+...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999877666443
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.92 E-value=0.075 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
+..+.+|.||||+||||.+..|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999987766543
No 233
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.92 E-value=0.087 Score=57.37 Aligned_cols=28 Identities=32% Similarity=0.712 Sum_probs=23.8
Q ss_pred cCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 270 LRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 270 ~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...++++|.||.|+||||++..++..+-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3567999999999999999998876653
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.88 E-value=0.095 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..++.|.||+|+||||++..|..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999998877653
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.88 E-value=0.09 Score=60.70 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+++|.||||||||+++..+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999998777665443
No 236
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.87 E-value=0.1 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
++..|.||+|+||||++..++..+-
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 5789999999999999998887664
No 237
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=91.86 E-value=0.19 Score=60.27 Aligned_cols=32 Identities=25% Similarity=0.069 Sum_probs=26.3
Q ss_pred cCCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHH
Q 003388 255 ENHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTI 289 (824)
Q Consensus 255 ~~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti 289 (824)
....+-|..++-..+..+ +.+...|||||-+.
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf 109 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVA 109 (997)
T ss_dssp CCCCHHHHHHHHHHHTTS---EEECCSTHHHHHHH
T ss_pred CCCcHHHHhhcccccCCc---eeeccCCCchHHHH
Confidence 356899999999888654 88999999999644
No 238
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.85 E-value=0.11 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+|.||||+||||+...+..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999987766543
No 239
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.84 E-value=0.1 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.|||||||||++..|...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999887776544
No 240
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.82 E-value=0.13 Score=56.35 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=21.1
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
+....+++|.|||||||||++..+..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33456999999999999998877664
No 241
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.81 E-value=0.096 Score=52.18 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhhHHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+|.||||+||||++..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999877766543
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.80 E-value=0.1 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
...++.|.||+|+||||++..+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 345899999999999998776654
No 243
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.79 E-value=0.097 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=17.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+.+|.||||+||||.+..|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5789999999999877766543
No 244
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.79 E-value=0.093 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+|.||||+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999997766544
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.76 E-value=0.084 Score=52.35 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
...+.+|.||||+||||.+..|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999977766543
No 246
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.74 E-value=0.096 Score=55.76 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=30.1
Q ss_pred CcCEEEEcCCCCCCchh--hHhhhhc---cCceEEEE-cCCCCCCceeeCh
Q 003388 483 GFDVVIIDEAAQAVEPA--TLVPLAT---GCKQVFLV-GDPVQLPATVISP 527 (824)
Q Consensus 483 ~fd~vIIDEAsq~~e~~--~lipL~~---~~~k~VLV-GD~~QLpP~v~s~ 527 (824)
.+.+||||||..++... +|+...- ....+|++ -++..+.|++.|.
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 47899999999887543 3444431 22355555 4677888888877
No 247
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.62 E-value=0.092 Score=55.94 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.++++|.||||||||+..+.++.....
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 348999999999999999988877654
No 248
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.62 E-value=0.1 Score=49.82 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
+.+|.||||+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999987766544
No 249
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.54 E-value=0.15 Score=54.36 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.||+|+|||||+..+...+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3478999999999999999887655
No 250
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.53 E-value=0.12 Score=50.40 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
....+|.|||||||||+...+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999997766544
No 251
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.50 E-value=0.12 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.||||+||||.+..|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999877666543
No 252
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.48 E-value=0.1 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.|+||+||||.+..+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3478999999999999887776554
No 253
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.47 E-value=0.16 Score=60.94 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhhcC--CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 258 NASQLEAIHEGLLR--KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 258 N~sQ~~AI~~~l~~--~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+.+.+...+.. ....||.||||||||+++.++...+.
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 35566666666543 45689999999999999888877664
No 254
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.46 E-value=0.21 Score=55.98 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 262 LEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 262 ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+..+..++....+++|-|+||+|||+.++.++..+.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 344555677778999999999999999998876654
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.43 E-value=0.18 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.4
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+....+++|.||||+|||+.+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4555679999999999999998887654
No 256
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.41 E-value=0.082 Score=60.20 Aligned_cols=20 Identities=45% Similarity=0.797 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
+||.||||||||+++..+..
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999998776653
No 257
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.38 E-value=0.12 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.|||||||||.+..+...+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999877765443
No 258
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.37 E-value=0.092 Score=52.38 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
.+|.|||||||||++..+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999987766543
No 259
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.34 E-value=0.12 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+..|.|+||+||||.+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999998776665443
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.31 E-value=0.12 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..++.|.||||+||||++..+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999998776654
No 261
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.29 E-value=0.12 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+.+|.||||+||||.+..|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999877766543
No 262
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.29 E-value=0.19 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.-+.+|.||||+||||.+..|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999877666543
No 263
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.26 E-value=0.11 Score=54.16 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.3
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+....+++|.||||+|||+.+..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456799999999999999988887644
No 264
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.24 E-value=0.18 Score=57.58 Aligned_cols=35 Identities=6% Similarity=0.014 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 262 LEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 262 ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+..+..++....+++|.||||+|||+.+..++..+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 34444556667799999999999999998887654
No 265
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.21 E-value=0.096 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..+.+|.||||+||||.+..+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999998776543
No 266
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.19 E-value=0.17 Score=55.25 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=25.2
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+....+++|.||||+|||+.+..++..+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 455667999999999999999998876654
No 267
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.12 E-value=0.13 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.|+||+||||++..+...+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999887766544
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.12 E-value=0.083 Score=50.98 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=13.6
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
.+.+|.|+||+||||....+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999776654
No 269
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.10 E-value=0.085 Score=52.85 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=23.4
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+....++.|.||+|+||||++..++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556799999999999999888776543
No 270
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.09 E-value=0.13 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..++.|.||+|+||||++..|..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999998877654
No 271
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.09 E-value=0.12 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.|||||||||.+..|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999877766544
No 272
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.06 E-value=0.13 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=16.3
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
+.+|-||||+||||....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999986665543
No 273
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.05 E-value=0.12 Score=56.00 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=25.9
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+....+++|.||||+|||+.+..++..+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5556779999999999999999988876653
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.03 E-value=0.14 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+|.|+|||||||+...|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999987665543
No 275
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=90.94 E-value=0.074 Score=66.81 Aligned_cols=77 Identities=12% Similarity=0.045 Sum_probs=55.0
Q ss_pred CcceEEecCCCCCCccccEEEEEeeecCC----CCcccc---------------cCCCCeeEeeeecccceEEEEecCcc
Q 003388 672 QKVVDITTVDGCQGREKDVAIFSCVRASD----KKSIGF---------------LADYRRMNVGITRAKSSILVVGCAST 732 (824)
Q Consensus 672 ~~~v~V~TVd~fQG~E~diVIlS~vrs~~----~~~igf---------------l~d~rrlNVAlTRAk~~LiIvG~~~~ 732 (824)
...|.|.|+|..+|.|+++|++..+..+. ...-+| ..++|.++|||||||..|+|......
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 46799999999999999999998775541 111123 12345599999999999999876533
Q ss_pred ------ccCCchHHHHHHHHHH
Q 003388 733 ------LREDKHWNNLVKSAEK 748 (824)
Q Consensus 733 ------L~~~~~w~~li~~~~~ 748 (824)
...+.....+..++..
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l~~ 757 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYIGQ 757 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHHHT
T ss_pred CCCCCcCCCCHHHHHHHHHHHH
Confidence 2235667777776654
No 276
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.92 E-value=0.13 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..++.|.||||+||||++..|...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999987766533
No 277
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.90 E-value=0.14 Score=57.20 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+|.||||+||||++..+...+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999887664
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.84 E-value=0.14 Score=50.52 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.++..++.+... ....++.|.||+|+||||++..+...+
T Consensus 11 ~~~~~~~~~~~~--~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 11 SVEKVDRQRLLD--QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCCHHHHHHHHT--SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455556555432 234578899999999998776665443
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.84 E-value=0.14 Score=53.17 Aligned_cols=28 Identities=32% Similarity=0.681 Sum_probs=23.2
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+...++++|.||.|+||||++..++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3456799999999999999988877654
No 280
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.75 E-value=0.12 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+|.||||+||||.+..+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999997766543
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.72 E-value=0.16 Score=49.41 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
-+++.|.||+|+||||++..++..+-
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999998887653
No 282
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.67 E-value=0.15 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=16.8
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
..+|.|+||+||||....+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999987666543
No 283
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.60 E-value=0.14 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
-+.+|.||||+||||.+..|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999877665543
No 284
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.59 E-value=0.084 Score=61.61 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=15.9
Q ss_pred eEEEEcCCCCChhhHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~l 292 (824)
.+|+.||||||||+++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~l 347 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFI 347 (595)
T ss_dssp CEEEEESSCCTHHHHHHSS
T ss_pred ceEEECCCchHHHHHHHHH
Confidence 6999999999999866543
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.48 E-value=0.14 Score=56.06 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=23.0
Q ss_pred cCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 270 LRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 270 ~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
...++++|.||+|+||||++..++..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 346799999999999999999887654
No 286
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.45 E-value=0.15 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..++.|.||+|+||||++..|...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999877665543
No 287
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.43 E-value=0.27 Score=48.89 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.....++.... .....+.+|.||||+||||++..+...+
T Consensus 11 ~~~~~~r~~~~--~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 11 ALTRSERTELR--NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CCCHHHHHHHH--TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCHHHhhccc--CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566666643 2334588899999999998777665444
No 288
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.41 E-value=0.27 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...+.|.|+||+|||+++..++..+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999887664
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.41 E-value=0.11 Score=62.30 Aligned_cols=20 Identities=45% Similarity=0.702 Sum_probs=17.0
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
=+|+.||||||||+++.++.
T Consensus 240 GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999998777654
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.33 E-value=0.23 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.||+|+|||||+..+...+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999999887655
No 291
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.27 E-value=0.27 Score=56.01 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+.+|.|+||+|||||+..|+..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678889999999999999986654
No 292
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.18 E-value=0.16 Score=50.65 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhhHHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+|.||||+||||.+..|...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999877666543
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.16 E-value=0.18 Score=54.92 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=25.9
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+....+++|.||||+|||+.+..++..+..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556679999999999999999998876653
No 294
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.16 E-value=0.4 Score=56.67 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhh---cCC-CeEEEEcCCCCChhhHHHHHHH
Q 003388 256 NHNASQLEAIHEGL---LRK-AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l---~~~-~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.++..|..||...+ ... ...++.|.+|||||.|++.++.
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~ 50 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIE 50 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHH
Confidence 46777888877533 222 2567899999999999998764
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.02 E-value=0.11 Score=49.93 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCCCChhhHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILG 291 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~ 291 (824)
...++.|.||+|+||||++..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345899999999999998875
No 296
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.98 E-value=0.18 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..++.|.||+|+||||++..+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999988776653
No 297
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.97 E-value=0.18 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+++|.||+|+|||||+..+...+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999998876654
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.94 E-value=0.15 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.++.|.||.|+||||++..+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36889999999999988776543
No 299
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.92 E-value=0.21 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
....|.||||+||||++..+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999987665543
No 300
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.81 E-value=0.18 Score=60.59 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+|+.||||||||+++..+...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 599999999999998887766553
No 301
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.68 E-value=0.19 Score=47.29 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+++++|.||.|+|||+.+-++..++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999888776554
No 302
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.61 E-value=0.5 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+|.||+|+||||++..+...+.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678889999999999998876553
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.54 E-value=0.097 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+..|.||||+||||.+..|...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999998877766544
No 304
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.54 E-value=0.21 Score=60.89 Aligned_cols=40 Identities=33% Similarity=0.527 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 259 ASQLEAIHEGLLR--KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 259 ~sQ~~AI~~~l~~--~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
+...+.+...+.+ .+..||.||||||||+++.++...+..
T Consensus 176 ~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 176 DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3455555555532 345799999999999988888776643
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.44 E-value=0.17 Score=49.96 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=16.0
Q ss_pred eEEEEcCCCCChhhHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~l 292 (824)
+..|.||||+||||+...+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999977655
No 306
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.34 E-value=0.21 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.695 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.||||+||||.+..+...+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999877665443
No 307
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.31 E-value=0.17 Score=60.72 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+|+.||||||||+++..+...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999887765443
No 308
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.27 E-value=0.32 Score=51.63 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=23.0
Q ss_pred HhhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 267 EGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 267 ~~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+....++.|.||+|+||||.+..|...+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344456799999999999998777666543
No 309
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.10 E-value=0.24 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=18.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+..|.||||+||||++..+...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999877665543
No 310
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.94 E-value=0.26 Score=48.53 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
++.|.||+|+||||++..+...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 67899999999999888776544
No 311
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.94 E-value=0.19 Score=61.32 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+.+||.||||||||+++..+...+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3699999999999998877665543
No 312
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.89 E-value=0.22 Score=49.43 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
...+|.||+|+|||+++..++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999887643
No 313
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.84 E-value=0.16 Score=61.00 Aligned_cols=19 Identities=47% Similarity=0.758 Sum_probs=16.0
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.|+.||||||||.++.++.
T Consensus 514 vLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp CEEESSTTSSHHHHHHHHH
T ss_pred EEEecCCCCCchHHHHHHH
Confidence 7899999999998766654
No 314
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.66 E-value=0.34 Score=54.16 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+.+|.|++|+|||||++.+...+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677789999999999999987664
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.64 E-value=0.37 Score=48.14 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 258 NASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 258 N~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+-.|..|+... ....++.|.||.|+||||++..+...
T Consensus 9 ~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHH-HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CHhHHHHHHhc-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44566677664 44569999999999999987766543
No 316
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.45 E-value=0.28 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=18.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+.+|.||+|+||||.+..|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999988776543
No 317
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.41 E-value=0.32 Score=48.36 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+.++|.|+||+|||+++..++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578999999999999998887664
No 318
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.33 E-value=0.23 Score=60.09 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
...+||.||||||||+++..+.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4569999999999998766654
No 319
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.26 E-value=0.27 Score=48.57 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..++.|.||+|+||||++..+...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999877665443
No 320
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.18 E-value=0.25 Score=53.40 Aligned_cols=28 Identities=32% Similarity=0.204 Sum_probs=23.1
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+....+++|.||||+|||+.+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555679999999999999998887654
No 321
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.04 E-value=0.34 Score=54.30 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 262 LEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 262 ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
...+..++....+++|-||||+|||+.+..++..+..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3344456666789999999999999999988876653
No 322
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.03 E-value=0.23 Score=53.03 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=23.2
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+....+++|.||||+|||+.+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555679999999999999998887654
No 323
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.02 E-value=0.41 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
++.|.||+|+||||++..+ ..++.
T Consensus 94 iigI~GpsGSGKSTl~~~L-~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVL-KALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHHhc
Confidence 7999999999999887554 45543
No 324
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.01 E-value=0.2 Score=54.31 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=22.5
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+....++.|.||||+|||+.+..++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4455679999999999999988776543
No 325
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.93 E-value=0.2 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=16.4
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
+....++.|.||+|+||||++..+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3345689999999999999887765
No 326
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.91 E-value=0.27 Score=47.42 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
+++++|.||-|+|||+++-+|...
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999877766543
No 327
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.82 E-value=0.31 Score=48.95 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 265 IHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 265 I~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
|.-.+....++.|.||.|+||||++..|..
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 333344556899999999999998876654
No 328
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.75 E-value=0.35 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
++..|.||||+||||+...+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3788999999999987766543
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.71 E-value=0.36 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..+++|.||+|+||||++..|+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 45889999999999998877664
No 330
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.66 E-value=0.46 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=18.4
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+|.||||+|||++...+...+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 38899999999999877665443
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.53 E-value=0.28 Score=48.20 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=16.9
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
...|.||||+||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999987766543
No 332
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.52 E-value=0.31 Score=48.37 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+++++|.||.|+|||+.+-++..++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 47999999999999998877765554
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.48 E-value=0.27 Score=48.54 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=17.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..++.|.||||+||||++..+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3478899999999998766543
No 334
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.44 E-value=0.18 Score=61.02 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
...+|+.||||||||+++..+...
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999977776544
No 335
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.38 E-value=0.28 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=17.6
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
+.+|.||||+||||....+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999997766543
No 336
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.33 E-value=0.33 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.++.|.||+|+||||++..+..
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999987765544
No 337
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.19 E-value=0.33 Score=48.06 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=20.0
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
+....++.|.||.|+||||++..+..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33456999999999999998876654
No 338
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=87.19 E-value=0.37 Score=60.87 Aligned_cols=74 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred CcceEEecCCCCCCccccEEEEEeeecC----CCCcccccC------------------------CCCeeEeeeecccce
Q 003388 672 QKVVDITTVDGCQGREKDVAIFSCVRAS----DKKSIGFLA------------------------DYRRMNVGITRAKSS 723 (824)
Q Consensus 672 ~~~v~V~TVd~fQG~E~diVIlS~vrs~----~~~~igfl~------------------------d~rrlNVAlTRAk~~ 723 (824)
...|.|.|+|..+|.|+++|++..+..+ ....-+|+. +++.++||+|||+..
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~ 664 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDR 664 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSE
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCe
Confidence 4679999999999999999999877654 111223322 234599999999999
Q ss_pred EEEEecCc-----cccCCchHHHHHHH
Q 003388 724 ILVVGCAS-----TLREDKHWNNLVKS 745 (824)
Q Consensus 724 LiIvG~~~-----~L~~~~~w~~li~~ 745 (824)
|++.-... .+..++....|...
T Consensus 665 L~lsy~~~~~~~~~~~pS~~l~el~~~ 691 (1166)
T 3u4q_B 665 LYVSYPIADAEGKTLLPSMIVKRLEEL 691 (1166)
T ss_dssp EEEEEESSCSSSCCCCBCHHHHHHHHH
T ss_pred EEEEEeccCCCCCccCCCHHHHHHHHH
Confidence 99985432 23335555555554
No 339
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.16 E-value=0.44 Score=45.40 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.0
Q ss_pred cCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 270 LRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 270 ~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
....++.|.||-|+||||.+..+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445589999999999999888776654
No 340
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.12 E-value=0.4 Score=51.68 Aligned_cols=28 Identities=43% Similarity=0.409 Sum_probs=22.6
Q ss_pred cCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 270 LRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 270 ~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
....++.|.||||+||||++..++..+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3456899999999999999888776543
No 341
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.09 E-value=0.37 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
-+..|.||||+||||.+..+...+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999887776555
No 342
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.88 E-value=0.37 Score=48.02 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhc--CCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 259 ASQLEAIHEGLL--RKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 259 ~sQ~~AI~~~l~--~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+.|.+.+...+. .....+|.|+||+|||+++..++..+
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 445555444332 23457888999999999998887664
No 343
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.86 E-value=0.32 Score=49.84 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=17.0
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
-+..|.|||||||||+...|.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368899999999998766554
No 344
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.82 E-value=0.33 Score=65.52 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=23.8
Q ss_pred HHHHhhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 264 AIHEGLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 264 AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+..++.....+|+.||||||||.++..++..
T Consensus 1259 ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1259 IFYDLLNSKRGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp HHHHHHHHTCEEEEECSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 34445555568999999999999988666543
No 345
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.77 E-value=0.37 Score=51.12 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..++.|.||.|+||||++..+...+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999998876554
No 346
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.71 E-value=0.37 Score=51.70 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..++.|.||+|+|||||+..+...+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988877554
No 347
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.70 E-value=0.29 Score=54.03 Aligned_cols=29 Identities=24% Similarity=0.207 Sum_probs=23.2
Q ss_pred HhhcCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 267 EGLLRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 267 ~~l~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+....+++|.||||+|||+.+..++..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 35556779999999999999988876533
No 348
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.69 E-value=0.44 Score=48.54 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
+-+..|.||||+||||+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999998666554
No 349
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.54 E-value=0.59 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+.++|.||+|+|||+++..++..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999988886654
No 350
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.53 E-value=0.38 Score=53.36 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 259 ASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 259 ~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
...++++..+....+++.|.||+|+||||++-.+..
T Consensus 56 ~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 56 SAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 445666666666678999999999999998876653
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.52 E-value=0.44 Score=50.60 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..++.|.||.|+||||++..+...+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4589999999999999988776544
No 352
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.45 E-value=0.42 Score=48.48 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
+.-+.+|.||||+||||.+..+...+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999888776655
No 353
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.44 E-value=0.33 Score=48.33 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.7
Q ss_pred CeEEEEcCCCCChhhHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~l 292 (824)
-+..|.||||+||||++..+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 47899999999999866654
No 354
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.28 E-value=0.44 Score=51.88 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=24.0
Q ss_pred HHHHhhcCCCeEEEEcCCCCChhhHHHHHHH
Q 003388 264 AIHEGLLRKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 264 AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
-+..++....+++|.||.|+||||++..++.
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444555667999999999999998877653
No 355
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.28 E-value=0.33 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.||||+|||++...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999988776543
No 356
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.20 E-value=0.42 Score=48.72 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
...++-|.||.|+||||++..+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344788999999999998776544
No 357
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.03 E-value=0.52 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.....|.||||+||||+...+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999987666543
No 358
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=85.80 E-value=0.43 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=19.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
...++.|.||.|+||||++..+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999998776654
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.75 E-value=0.58 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..++.|.||+|+||||++..+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999998766543
No 360
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.62 E-value=0.39 Score=51.60 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=24.8
Q ss_pred HHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 261 QLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 261 Q~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+-+...+....+++|.||.|+||||++..++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 344455555556799999999999999877654
No 361
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.54 E-value=0.46 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+.+|.||||+||||.+..+...+-
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999998887766553
No 362
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.47 E-value=0.49 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..++++.|.||+||||++..+...+.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999886653
No 363
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.26 E-value=0.43 Score=46.14 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
-+||.||+|+|||++..+++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998764
No 364
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=84.93 E-value=0.46 Score=46.37 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.8
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
.+..|.||||+||||+...+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998765543
No 365
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.91 E-value=0.64 Score=53.82 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhc----CCCeEEEEcCCCCChhhHHHHHH
Q 003388 259 ASQLEAIHEGLL----RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 259 ~sQ~~AI~~~l~----~~~~~LIqGPPGTGKT~ti~~li 293 (824)
+...+.+...+. ..++++|+||+|.|||+.+..+.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHH
Confidence 445566666653 34689999999999999887764
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=84.73 E-value=0.53 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..++.|.||+|+||||++..|. .++.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~-gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQ-ALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH-HHHH
T ss_pred CEEEEEECCCCchHHHHHHHHH-hhcc
Confidence 4578999999999998776554 4443
No 367
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.72 E-value=0.6 Score=46.89 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+.+|.||+|+||||.+..+...+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999887776544
No 368
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=84.70 E-value=2.7 Score=45.94 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.|++.|+..+...- ...+.+|..|-+.|||++++.++...
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~ 202 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHF 202 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHH
Confidence 68999998887543 24689999999999999988876543
No 369
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.53 E-value=0.53 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..++.|.||.|+|||||+..+...+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4589999999999999998876544
No 370
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.52 E-value=0.81 Score=50.90 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..++|.||+|+|||+++..++..++.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~ 79 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLL 79 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999998888877765
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=84.47 E-value=0.57 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..++.|.||+|+||||++..|...+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4478899999999998766554433
No 372
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.30 E-value=0.57 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.|..|.||+|+||||.+..+...+-
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999998887766553
No 373
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.58 E-value=0.49 Score=49.49 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=17.1
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
+..|.||||+||||+...+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999998776654
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.49 E-value=0.71 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=17.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
-+..|.|+|||||||+...+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999987665543
No 375
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.48 E-value=0.62 Score=52.64 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+++|.||.|+||||++..|...+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3489999999999999988776544
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.37 E-value=0.66 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=18.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+..|.||+|+||||++..+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998776654
No 377
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.32 E-value=0.58 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.||+|+|||++...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47899999999999988777654
No 378
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.20 E-value=0.49 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+.+|.||+|+|||++...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357899999999999988887644
No 379
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.96 E-value=0.65 Score=51.55 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+.+|.||||+||||.+..+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999776654
No 380
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=82.84 E-value=1.3 Score=45.71 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=21.1
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+-+...+||.|+||||||+.....+..-+
T Consensus 18 l~~gs~~li~g~p~~~~~~l~~qfl~~g~ 46 (260)
T 3bs4_A 18 KKHSLILIHEEDASSRGKDILFYILSRKL 46 (260)
T ss_dssp CTTCEEEEEECSGGGCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCccHHHHHHHHHHHHH
Confidence 44566899999999999965565554433
No 381
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.79 E-value=0.77 Score=49.42 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
...++.|.||||+||||++..+...+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999988876654
No 382
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.73 E-value=0.99 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+.+|.||+|+||||++..+...+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367788999999999999887655
No 383
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.60 E-value=0.9 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+..|.||||+||||+...+..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999987665543
No 384
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=82.56 E-value=0.64 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~~ 295 (824)
.-|.||||+||||....|...
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHH
Confidence 568899999999877665543
No 385
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.37 E-value=0.68 Score=50.10 Aligned_cols=26 Identities=31% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..++.|.||||+||||++-.++..+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 35789999999999999998887654
No 386
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.22 E-value=0.46 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
.+.+|.||+|||||++...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999998887653
No 387
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.22 E-value=0.81 Score=52.37 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=23.8
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHH-HHHHHh
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGL-LSAILH 298 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~l-i~~ll~ 298 (824)
.+....+++|.||||+||||++..+ +..++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4445679999999999999998885 344443
No 388
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.19 E-value=0.73 Score=60.35 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=24.1
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+.+...++|.||||||||+...+++....
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44567899999999999999998876554
No 389
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=82.02 E-value=0.77 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+++++|.||.|+|||+.+-++...+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 47999999999999998887766654
No 390
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.65 E-value=0.65 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+.+|.||+|+|||+....+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 47899999999999988877644
No 391
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.62 E-value=0.75 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+.+|.||+|+|||+....+...+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999888876554
No 392
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.60 E-value=0.78 Score=52.54 Aligned_cols=29 Identities=28% Similarity=0.582 Sum_probs=23.8
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+....+++|.||||+|||+.+..++..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45566799999999999999888877654
No 393
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=81.37 E-value=1.2 Score=47.98 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..+.++.|-+|+||||+.+.+...+..
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 458999999999999999998766643
No 394
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.31 E-value=0.51 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.++.|.||.|+||||++..++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998877766544
No 395
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.29 E-value=0.75 Score=45.62 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=16.9
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
-+..|.||||+|||++...+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368899999999998766543
No 396
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.27 E-value=0.68 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChhhHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.+..|.|++|+||||.+..+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999977766543
No 397
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.09 E-value=0.79 Score=48.18 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=16.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
..+..|.||+|+||||+...+...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999987766543
No 398
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.92 E-value=0.84 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..-.+|.||||+|||+.+..++
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3458999999999999887665
No 399
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=80.70 E-value=0.88 Score=44.31 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
++|.||+|+|||+.+..++
T Consensus 8 v~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 6899999999999877665
No 400
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=80.63 E-value=0.91 Score=41.94 Aligned_cols=19 Identities=42% Similarity=0.642 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6889999999999877665
No 401
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=80.56 E-value=1 Score=45.39 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
..+..|.|++|+||||.+..+...+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999887776555
No 402
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=80.19 E-value=2.7 Score=49.48 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhh---cCC-CeEEEEcCCCCChhhHHHHHHH
Q 003388 256 NHNASQLEAIHEGL---LRK-AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l---~~~-~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..|..|..||...+ ... ...++.|.+|+|||.|++.++.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~ 54 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIK 54 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHH
Confidence 45677887777533 322 2567889999999999998764
No 403
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.85 E-value=1 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.++++|.||-|+|||+.+-++..++
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999998776555444
No 404
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=79.74 E-value=3.3 Score=40.97 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.|..|-|+.|+||||.+..|...|
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 388899999999999876665444
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=79.64 E-value=1.1 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHHHHhh--cCCCeEEEEcCCCCChhhHHHHHHHH
Q 003388 263 EAIHEGL--LRKAFVLIQGPPGTGKTQTILGLLSA 295 (824)
Q Consensus 263 ~AI~~~l--~~~~~~LIqGPPGTGKT~ti~~li~~ 295 (824)
.||...+ .+...+.|.||+|+||||++..|+..
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4665543 35669999999999999987665543
No 406
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=79.46 E-value=1 Score=41.60 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999876654
No 407
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=79.39 E-value=0.95 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.5
Q ss_pred eEEEEcCCCCChhhHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~ 294 (824)
.++|.||+|+|||+.+..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999998876653
No 408
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.34 E-value=0.65 Score=63.40 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=23.3
Q ss_pred HHHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 263 EAIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 263 ~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
..+...+.....+|+.||||||||.++...+
T Consensus 1295 ~ll~~ll~~~~pvLL~GptGtGKT~li~~~L 1325 (3245)
T 3vkg_A 1295 DVLHAWLSEHRPLILCGPPGSGKTMTLTSTL 1325 (3245)
T ss_dssp HHHHHHHHTTCCCEEESSTTSSHHHHHHHHG
T ss_pred HHHHHHHHCCCcEEEECCCCCCHHHHHHHHH
Confidence 3444555556678999999999999887654
No 409
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.06 E-value=1.6 Score=46.60 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+.+..|-+|+||||+.+.+...+..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~ 40 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMAR 40 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 48999999999999999998877653
No 410
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=79.04 E-value=1 Score=42.29 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.8
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
.++|.|+||+|||+.+..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999777654
No 411
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=78.86 E-value=1.1 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
..-.+|.|++|+|||+.+..++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999998877653
No 412
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=78.85 E-value=1.1 Score=41.56 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
.+|.|+||+|||+.+..++.
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 67899999999998877653
No 413
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=78.85 E-value=0.97 Score=61.14 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhhcCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 256 NHNASQLEAIHEGLLRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 256 ~lN~sQ~~AI~~~l~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+++.=..++..|+...-..++.||||||||.|+..+..++
T Consensus 629 Pltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~l 669 (2695)
T 4akg_A 629 PLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNL 669 (2695)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHh
Confidence 34555556666777665568899999999999998876544
No 414
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=78.69 E-value=3.3 Score=40.62 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChhhHHHHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li~~l 296 (824)
|..|-|+.|+||||.+..|...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999887766554
No 415
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.62 E-value=1.2 Score=46.83 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
.+..|.||+|+||||++..+...+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677779999999999998876553
No 416
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.62 E-value=1.6 Score=56.37 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=25.4
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+....+++|.||||||||+....++...+.
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~ 60 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 60 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4555679999999999999999888766553
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=78.42 E-value=1.1 Score=45.26 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999876544
No 418
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=78.39 E-value=1.1 Score=41.31 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|++|+|||+.+..++
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999877664
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=78.35 E-value=1.2 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=18.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||.+..+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45699999999999998776543
No 420
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=78.25 E-value=1.2 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=19.4
Q ss_pred hcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 269 LLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 269 l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
+.. .++.|.||.|+||||.+..+.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHH
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHh
Confidence 346 799999999999998776543
No 421
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=78.19 E-value=1.3 Score=50.31 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+..||-|++|+|||+.+..++..++.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999877764
No 422
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.16 E-value=1.2 Score=41.35 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6889999999999877664
No 423
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.05 E-value=1.6 Score=56.56 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=25.5
Q ss_pred hhcCCCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 268 GLLRKAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 268 ~l~~~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
.+....+++|.||||+|||+.++.++.....
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLq~a~~~~~ 409 (1706)
T 3cmw_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 409 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3446679999999999999999998876653
No 424
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=78.03 E-value=1.2 Score=41.89 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999877664
No 425
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=77.98 E-value=1.1 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999877654
No 426
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=77.84 E-value=1.2 Score=41.55 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6889999999999877664
No 427
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=77.61 E-value=1.1 Score=43.55 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=16.5
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
++||.||+|||||+....+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 47999999999998776653
No 428
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=77.45 E-value=1.3 Score=41.79 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.5
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999877665
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=77.34 E-value=1.3 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
.+.++.|+||+||||+...+...+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999887776544
No 430
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=77.15 E-value=1.4 Score=44.81 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=18.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 4569999999999999866544
No 431
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=77.01 E-value=1.4 Score=41.08 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7889999999999877764
No 432
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=76.97 E-value=1 Score=46.24 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.3
Q ss_pred CCeEEEEcCCCCChhhHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~l 292 (824)
..+.+|.|++|+||||.+..|
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTT
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 358899999999999977554
No 433
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=76.83 E-value=1.4 Score=40.75 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=16.1
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999876654
No 434
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=76.71 E-value=1.4 Score=40.88 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999877654
No 435
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=76.68 E-value=1.3 Score=41.17 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=16.0
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999776654
No 436
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=76.62 E-value=1.4 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhhHHHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~~l 296 (824)
+.|.||.|+||||++-.|...+
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999888776544
No 437
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=76.57 E-value=1.9 Score=46.63 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..++.|.||||+||||++-.|+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHh
Confidence 4589999999999999876654
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=76.57 E-value=1.4 Score=45.05 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~ 294 (824)
...++.|.||.|+||||.+..+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456999999999999997766543
No 439
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=76.55 E-value=1.4 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999977654
No 440
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=76.30 E-value=1.4 Score=41.34 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=16.0
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 7899999999999776554
No 441
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=76.29 E-value=2.3 Score=49.33 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHh
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAILH 298 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll~ 298 (824)
..+.++.|.+|+|||++.+.+...+..
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~ 34 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAE 34 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHH
Confidence 458999999999999999998877654
No 442
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=76.14 E-value=1.4 Score=45.30 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999877654
No 443
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=76.13 E-value=1.4 Score=44.76 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999977654
No 444
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=76.05 E-value=1.5 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHHHHH
Confidence 4569999999999999877654
No 445
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=75.98 E-value=2.3 Score=45.60 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+.++.|-+|+|||++.+.+...+.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999998876653
No 446
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=75.97 E-value=1.5 Score=40.85 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6889999999999876654
No 447
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=75.95 E-value=1.4 Score=45.90 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||++..+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45699999999999999776553
No 448
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=75.93 E-value=1.4 Score=40.98 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.8
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999998776653
No 449
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=75.85 E-value=1.5 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999877654
No 450
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=75.80 E-value=1.6 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||.+..+.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45699999999999999776654
No 451
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=75.71 E-value=1.3 Score=47.07 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
-+||.||+|+|||++.++++
T Consensus 149 gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 39999999999999998865
No 452
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=75.70 E-value=1.2 Score=47.45 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~ 294 (824)
++++|.||-|+||||++..++.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHh
Confidence 5899999999999998877653
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=75.70 E-value=1.5 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||.+..+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45699999999999999776553
No 454
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=75.62 E-value=1.5 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=18.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||.+..+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 45689999999999998776543
No 455
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=75.59 E-value=1.6 Score=40.47 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=16.1
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999877664
No 456
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=75.54 E-value=2.9 Score=43.29 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.7
Q ss_pred CeEEEEcC-CCCChhhHHHHHHHHHHh
Q 003388 273 AFVLIQGP-PGTGKTQTILGLLSAILH 298 (824)
Q Consensus 273 ~~~LIqGP-PGTGKT~ti~~li~~ll~ 298 (824)
.+.+|.|+ ||.|||++.+.+...+..
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~ 109 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQ 109 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence 46777766 999999999998877653
No 457
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.52 E-value=1.6 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999977654
No 458
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=75.35 E-value=1.9 Score=40.57 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li 293 (824)
..-.+|.|+||+|||+.+..++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4468899999999999877654
No 459
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=75.22 E-value=1.5 Score=41.16 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999877654
No 460
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=75.21 E-value=1.4 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||.+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999998776543
No 461
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=75.18 E-value=1.6 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=18.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||.+..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45699999999999998776543
No 462
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=75.14 E-value=1.4 Score=42.38 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
.-.+|.|+||+|||+.+-.++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458999999999999887664
No 463
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.03 E-value=2 Score=46.95 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHhh--cCCCeEEEEcCCCCChhhHHHHHHHHH
Q 003388 261 QLEAIHEGL--LRKAFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 261 Q~~AI~~~l--~~~~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
=.+||...+ .+..-.+|.||||+|||+.+..+...+
T Consensus 161 GiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 161 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345665433 345679999999999999887765544
No 464
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=74.95 E-value=1.6 Score=41.81 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.5
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLT 28 (208)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999877665
No 465
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=74.83 E-value=1.3 Score=42.37 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=15.9
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
++|.|+||+|||+.+..++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999998776553
No 466
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=74.82 E-value=1.7 Score=40.23 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
.+|.|+||+|||+.+..++.
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57899999999998877653
No 467
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=74.70 E-value=1.7 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..|
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4569999999999999876654
No 468
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=74.69 E-value=1.6 Score=41.06 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 9 i~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7889999999999877665
No 469
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=74.60 E-value=1.7 Score=41.75 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
++|.|+||+|||+.+..++
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7889999999999776654
No 470
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=74.57 E-value=1.6 Score=41.59 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.0
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
-.+|.|++|+|||+.+..++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999887664
No 471
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=74.47 E-value=2.5 Score=44.60 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=21.6
Q ss_pred HHHHhhcCCCeEEEEcCCCCChhhHHHHHH
Q 003388 264 AIHEGLLRKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 264 AI~~~l~~~~~~LIqGPPGTGKT~ti~~li 293 (824)
.+...+. ..++.|.||+|+||||++-.|.
T Consensus 158 ~L~~~l~-G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 158 ELVDYLE-GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHTT-TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhhcc-CcEEEEECCCCCCHHHHHHHHH
Confidence 3334343 4589999999999999887765
No 472
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=74.34 E-value=2 Score=48.18 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+..-.+|.||||+|||+.+..++..+-
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 345799999999999999988877654
No 473
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=74.32 E-value=1.7 Score=44.72 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999876654
No 474
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=74.19 E-value=1.8 Score=41.26 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.1
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 14 i~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7889999999999776654
No 475
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=74.08 E-value=2.3 Score=47.21 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCe--EEEEcCCCCChhhHHHHHHH
Q 003388 262 LEAIHEGLLRKAF--VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 262 ~~AI~~~l~~~~~--~LIqGPPGTGKT~ti~~li~ 294 (824)
..-|...+....+ +.|.||+|+||||.+-.|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 5566666666566 89999999999998876654
No 476
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=74.02 E-value=1.8 Score=40.28 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=16.8
Q ss_pred eEEEEcCCCCChhhHHHHHH
Q 003388 274 FVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 274 ~~LIqGPPGTGKT~ti~~li 293 (824)
-.+|.|+||+|||+.+..++
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999877654
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=73.92 E-value=1.8 Score=40.56 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 18 i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999877654
No 478
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=73.89 E-value=1.8 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 4569999999999999977654
No 479
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=73.73 E-value=1.8 Score=41.04 Aligned_cols=19 Identities=26% Similarity=0.628 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999777664
No 480
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=73.71 E-value=1.6 Score=41.62 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.0
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6789999999999877654
No 481
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=73.68 E-value=1.8 Score=40.77 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=16.1
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7889999999999776654
No 482
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.66 E-value=1.8 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=18.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~l 292 (824)
...++.|.||.|+||||.+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHH
Confidence 4569999999999999877654
No 483
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=73.61 E-value=1.9 Score=41.29 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=16.6
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|++|+|||+.+..++
T Consensus 24 i~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7889999999999887765
No 484
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=73.59 E-value=3 Score=44.92 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+.++.|-+|+|||++.+.+...+.
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 46999999999999999999877665
No 485
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=73.54 E-value=1.8 Score=44.85 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=18.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||++..+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 45699999999999998776543
No 486
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=73.28 E-value=1.6 Score=40.47 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=15.2
Q ss_pred EEEEcCCCCChhhHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGL 292 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~l 292 (824)
.+|.|+||+|||+.+-.+
T Consensus 5 i~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 688999999999977654
No 487
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=73.15 E-value=1.8 Score=40.68 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
.+|.|++|+|||+.+-.++.
T Consensus 12 i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78899999999998776653
No 488
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=73.06 E-value=3.3 Score=43.56 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=20.7
Q ss_pred CeEEEEcC-CCCChhhHHHHHHHHHHh
Q 003388 273 AFVLIQGP-PGTGKTQTILGLLSAILH 298 (824)
Q Consensus 273 ~~~LIqGP-PGTGKT~ti~~li~~ll~ 298 (824)
.+.+|.|+ ||.|||++.+.+...+..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~ 131 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQ 131 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHh
Confidence 46777776 999999999998877653
No 489
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=72.96 E-value=1.8 Score=41.25 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.6
Q ss_pred EEEEcCCCCChhhHHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLLS 294 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li~ 294 (824)
.+|.|+||+|||+.+..++.
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67899999999998776653
No 490
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=72.89 E-value=1.9 Score=41.01 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+-.++
T Consensus 13 i~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999877654
No 491
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=72.85 E-value=3.3 Score=44.17 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
..+.++.|-+|.|||++.+.+...+.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA 44 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMS 44 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999877664
No 492
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=72.84 E-value=2 Score=46.51 Aligned_cols=23 Identities=48% Similarity=0.733 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||++..+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHH
Confidence 45699999999999999776554
No 493
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=72.79 E-value=2 Score=46.75 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH
Q 003388 272 KAFVLIQGPPGTGKTQTILGLLSAIL 297 (824)
Q Consensus 272 ~~~~LIqGPPGTGKT~ti~~li~~ll 297 (824)
+++++|.||-|+|||+.+-+|-.+++
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 47999999999999998776655444
No 494
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=72.76 E-value=2 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHH
Q 003388 271 RKAFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 271 ~~~~~LIqGPPGTGKT~ti~~li 293 (824)
...++.|.||.|+||||++..|.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 45699999999999999776553
No 495
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=72.74 E-value=1.7 Score=41.50 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=17.1
Q ss_pred CeEEEEcCCCCChhhHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li 293 (824)
.-.+|.|++|+|||+.+-.++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999776653
No 496
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=72.71 E-value=2 Score=48.24 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHH
Q 003388 273 AFVLIQGPPGTGKTQTILGLLSAI 296 (824)
Q Consensus 273 ~~~LIqGPPGTGKT~ti~~li~~l 296 (824)
-..++.|+||+||||+...+...+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999887776554
No 497
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=72.70 E-value=2 Score=41.69 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7889999999999776654
No 498
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=72.61 E-value=2.1 Score=40.38 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 13 i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7889999999999876654
No 499
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=72.50 E-value=2 Score=40.69 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 21 i~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7889999999999876654
No 500
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=72.45 E-value=2 Score=40.77 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=16.4
Q ss_pred EEEEcCCCCChhhHHHHHH
Q 003388 275 VLIQGPPGTGKTQTILGLL 293 (824)
Q Consensus 275 ~LIqGPPGTGKT~ti~~li 293 (824)
.+|.|+||+|||+.+..++
T Consensus 21 i~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999877665
Done!