BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003389
(824 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 47/264 (17%)
Query: 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
+G+ + P RSVR VS ++ M LLGP G+GKTT++ +AG + G
Sbjct: 18 VGVEKIYPGGARSVR---GVSFQIREGEMVGLLGPSGSGKTTILRLIAGL---ERPTKGD 71
Query: 231 ITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
+ G + + PQ R + Q+ MTV + + F RE
Sbjct: 72 VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG-----------------LRE 114
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
K+ P E+DA ++ + L+ + L+ A+ + +SGGQ++
Sbjct: 115 KRV---PKDEMDARVREL--------------LRFMRLESYANRFPHE-----LSGGQQQ 152
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV L VL DE +D+ ++ F++Q+ + VT + + E +
Sbjct: 153 RVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF-VTHDQEEALE 211
Query: 410 LFDDIILLSEGQIVYQGPRDNVLE 433
+ D +++L EG + G + V E
Sbjct: 212 VADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 52/267 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-R 245
L +++ +K LLGP G+GK+TL+ +AG SGKI + ++ E P+ R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPKDR 75
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+ Q+ + MTV + + F EL + P EID ++
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFP-------------LELRK-------APREEIDKKVR 115
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
VA L+ Y + +SGGQ++RV LV VL
Sbjct: 116 EVAKMLHIDKLLNRYPWQ-------------------LSGGQQQRVAIARALVKEPEVLL 156
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
+DE + LD+ ++ LK++ L +T + A E + D I ++ EG+I+
Sbjct: 157 LDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQV 215
Query: 426 GPRDNVLEFFEHMGFKCPERKGVADFL 452
G D V + P+ K V FL
Sbjct: 216 GTPDEV--------YYKPKYKFVGGFL 234
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKDV+ + ++ +++G G+GKTTL+ LAG L A+G+I G + F+ ++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA----AAGEIFLDGSPADPFLLRK 81
Query: 246 TCAYISQHDLHH-GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Y+ Q+ TV E + FS +G+ +E+ +R K+
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIKK------------- 123
Query: 305 KAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
VL+++GL AD + +SGGQK+R+ ML
Sbjct: 124 ----------------VLELVGLSGLAAADPL-------NLSGGQKQRLAIASMLARDTR 160
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
L +DE + LD + +I + L+ + + + L+ E D D I+ +S G I
Sbjct: 161 FLALDEPVSMLDPPSQREIFQVLESLKN---EGKGIILVTHELEYLDDMDFILHISNGTI 217
Query: 423 VYQGPRDNVLE 433
+ G + +E
Sbjct: 218 DFCGSWEEFVE 228
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 107/257 (41%), Gaps = 52/257 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL---- 238
V ++++S VK +LLGP G GKTT + +A G + + G+I Y G +L
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIA---GLEEPSRGQI-YIGDKLVADP 70
Query: 239 --NEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294
FVP R A + Q + MTV + + F + V
Sbjct: 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV------------------- 111
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
P EID ++ VA ++LGL T + + R +SGGQ++RV G
Sbjct: 112 -PRQEIDQRVREVA--------------ELLGL-----TELLNRKPRELSGGQRQRVALG 151
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
+V V MDE + LD+ ++ LK++ L VT I + E + D I
Sbjct: 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRI 210
Query: 415 ILLSEGQIVYQGPRDNV 431
+++ G + G D V
Sbjct: 211 AVMNRGVLQQVGSPDEV 227
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 117/288 (40%), Gaps = 44/288 (15%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V+ + VS VK LLGP G GKTT +L LAG SG+I + +N+
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIP 71
Query: 243 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P+ R + Q+ + MTV E + F R +S+ E +
Sbjct: 72 PKYREVGMVFQNYALYPHMTVFENIAFPLRA----------RRISKDEVEK--------- 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ V +A + L+ D +L D +SGGQ++RV LV
Sbjct: 113 ---RVVEIARK---LLIDNLL--------------DRKPTQLSGGQQQRVALARALVKQP 152
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
VL DE + LD++ + +K + L +T + A E + I + ++G+
Sbjct: 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGK 211
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKN 469
+V G D V + ++M +FL++ + + +Q +++
Sbjct: 212 LVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRD 259
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D +SGGQK+RV L VL DE ++ LD +TT I + LK + L +T+
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
++ + + D + ++S G+++ Q D V E F H P+ F+Q
Sbjct: 195 LL-ITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTL 245
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
E Y R + P +D V + GQ + + L
Sbjct: 246 HLDIPEDYQER----LQAEPFTDCVPMLRLEFTGQSVDAPL 282
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D +SGGQK+RV L VL D+ ++ LD +TT I + LK + L +T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
++ + + D + ++S G+++ Q D V E F H P+ F+Q
Sbjct: 218 LL-ITHEXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTL 268
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
E Y R + P +D V + GQ + + L
Sbjct: 269 HLDIPEDYQER----LQAEPFTDCVPXLRLEFTGQSVDAPL 305
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D+ +S GQKKRV +LV VL +DE + GLD +I K L +M L +T+
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 397 IVALLQPAPETYDL------FDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKG 447
I+A T+D+ D++ ++ EG+++ QG V E + + P
Sbjct: 198 IIA-------THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGH 250
Query: 448 VADFLQE 454
+ + L+E
Sbjct: 251 LMEILKE 257
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 39/253 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 57
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 112 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I A L T D II++ +G+IV Q
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARL----STVKNADRIIVMEKGKIVEQ 218
Query: 426 GPRDNVLEFFEHM 438
G +L E +
Sbjct: 219 GKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 39/253 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 63
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I A L T D II++ +G+IV Q
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARL----STVKNADRIIVMEKGKIVEQ 224
Query: 426 GPRDNVLEFFEHM 438
G +L E +
Sbjct: 225 GKHKELLSEPESL 237
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 63/258 (24%), Positives = 104/258 (40%), Gaps = 52/258 (20%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTT---LMLALAGKLGKDLRASGKITYCGHELNE 240
V +L+ ++ ++P +T L+GP G+GK+T L+ L G L GK
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP--------- 80
Query: 241 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+PQ Y LH V + GR L Y G+ P +
Sbjct: 81 -LPQYEHRY-----LHRQVAAVGQEPQVFGRSLQENIAY-------------GLTQKPTM 121
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+ A +G + I GL DT V DE +SGGQ++ V L+
Sbjct: 122 EEITAAAVKSGAHSF--------ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRK 172
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDII 415
VL +D+ ++ LD+++ Q+ + L + +L +T ++L++ A D I+
Sbjct: 173 PCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-------DHIL 225
Query: 416 LLSEGQIVYQGPRDNVLE 433
L G I G ++E
Sbjct: 226 FLEGGAIREGGTHQQLME 243
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D +SGGQK+RV L VL D+ ++ LD +TT I + LK + L +T+
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
++ + + D + ++S G+++ Q D V E F H P+ F+Q
Sbjct: 218 LL-ITHEMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTL 268
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
E Y R + P +D V + GQ + + L
Sbjct: 269 HLDIPEDYQER----LQAEPFTDCVPMLRLEFTGQSVDAPL 305
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 46/254 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT---YCGHELN 239
V +KD+S +K +LLGP G GKTT + +AG L + R I E
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLVADPEKG 76
Query: 240 EFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
FVP +R A + Q + TV + + F + V P
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKV--------------------PK 116
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
EID ++ VA + LGL T + + R +SGGQ++RV G +
Sbjct: 117 QEIDKRVREVA--------------EXLGL-----TELLNRKPRELSGGQRQRVALGRAI 157
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ V DE + LD+ + LK++ L VT I + E D I +
Sbjct: 158 IRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY-VTHDQVEAXTXGDRIAVX 216
Query: 418 SEGQIVYQGPRDNV 431
++G++ G D V
Sbjct: 217 NKGELQQVGTPDEV 230
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 48/266 (18%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASG 229
+H + V I +D S + +T L+GP G+GK+T++ L LR ASG
Sbjct: 378 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-------LRLYDPASG 430
Query: 230 KITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
I+ GH++ + P + I G ++ +L S E
Sbjct: 431 TISLDGHDIRQLNPVWLRSKI-----------------------GTVSQEPILFSCSIAE 467
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQ 347
A DP A Q + V + V I +T+VG+ +G+ SGGQ
Sbjct: 468 NIAYGADDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQ 519
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
K+R+ L+ +L +DE ++ LD+ + + + L +++ V +I L T
Sbjct: 520 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLS----T 575
Query: 408 YDLFDDIILLSEGQIVYQGPRDNVLE 433
+ + +L +G+I G + +L
Sbjct: 576 IKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 57
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 58 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 111
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 112 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 162
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L T D II++ +G+IV Q
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKNADRIIVMEKGKIVEQ 218
Query: 426 GPRDNVL 432
G +L
Sbjct: 219 GKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 63
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L T D II++ +G+IV Q
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKNADRIIVMEKGKIVEQ 224
Query: 426 GPRDNVL 432
G +L
Sbjct: 225 GKHKELL 231
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLT-----KLIQRF---------------YIPEN 59
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 114 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L D II++ +G+IV Q
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 220
Query: 426 GPRDNVL 432
G +L
Sbjct: 221 GKHKELL 227
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 59
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 60 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 113
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 114 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 164
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + ++ V +I L D II++ +G+IV Q
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----DRIIVMEKGKIVEQ 220
Query: 426 GPRDNVL 432
G +L
Sbjct: 221 GKHKELL 227
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 48/265 (18%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASG 229
+H + V I +D S + +T L+GP G+GK+T++ L LR ASG
Sbjct: 347 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL-------LRLYDPASG 399
Query: 230 KITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
I+ GH++ + P + I G ++ +L S E
Sbjct: 400 TISLDGHDIRQLNPVWLRSKI-----------------------GTVSQEPILFSCSIAE 436
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQ 347
A DP A Q + V + V I +T+VG+ +G+ SGGQ
Sbjct: 437 NIAYGADDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQ 488
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
K+R+ L+ +L +DE ++ LD+ + + + L +++ V +I L T
Sbjct: 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRL----ST 544
Query: 408 YDLFDDIILLSEGQIVYQGPRDNVL 432
+ + +L +G+I G + +L
Sbjct: 545 IKNANMVAVLDQGKITEYGKHEELL 569
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V + KD++ + + +GP G GK+TL+ +AG + SG + +N+ P
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R + Q + ++V E + F G+K
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSF------------------------GLK------- 101
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+AG + ++ V ++ + A + D + +SGGQ++RV G LV +
Sbjct: 102 ------LAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V +DE + LD++ Q+ + ++ L TMI + E L D I++L G++
Sbjct: 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G LE + + P + VA F+
Sbjct: 213 AQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V + KD++ + + +GP G GK+TL+ +AG + SG + +N+ P
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R + Q + ++V E + F G+K
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSF------------------------GLK------- 101
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+AG + ++ V ++ + A + D + +SGGQ++RV G LV +
Sbjct: 102 ------LAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V +DE + LD++ Q+ + ++ L TMI + E L D I++L G++
Sbjct: 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G LE + + P + VA F+
Sbjct: 213 AQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL +++ +K + ++G G+GK+TL KL + ++P+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRF---------------YIPEN 63
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
I HDL + ++ R +GV + +L S + + P ++ +
Sbjct: 64 GQVLIDGHDLALADP------NWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIY 117
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L +T+VG E G+SGGQ++R+ LV +L
Sbjct: 118 AAKLAGAH-----DFISE---LREGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
D+ ++ LD + I + + ++ V +I L T D II++ +G+IV Q
Sbjct: 169 FDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKNADRIIVMEKGKIVEQ 224
Query: 426 GPRDNVL 432
G +L
Sbjct: 225 GKHKELL 231
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 108/292 (36%), Gaps = 70/292 (23%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQ 252
+K +LLGP G GKTT + +AG + G+I + ++ P+ R + + Q
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL---EEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
MTV E + F + P EID ++ A Q
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQ 130
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
L+ Y ++ SGGQ++RV +V +VL MDE +
Sbjct: 131 IEELLNRYPAQL-------------------SGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG------ 426
LD+ + +K++ L VT I + E + D I +++ GQ++ G
Sbjct: 172 LDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 230
Query: 427 --------------PRDNVLE------FFEHMGFKCPERKGVADFLQEVTSK 458
P N+LE + E GF+ + + D L++ K
Sbjct: 231 LRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDLMDLLKDYVGK 282
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 108/292 (36%), Gaps = 70/292 (23%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQ 252
+K +LLGP G GKTT + +AG + G+I + ++ P+ R + + Q
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGL---EEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 91
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
MTV E + F + P EID ++ A Q
Sbjct: 92 SYAVWPHMTVYENIAFPLKIKKF--------------------PKDEIDKRVRWAAELLQ 131
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
L+ Y ++ SGGQ++RV +V +VL MDE +
Sbjct: 132 IEELLNRYPAQL-------------------SGGQRQRVAVARAIVVEPDVLLMDEPLSN 172
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG------ 426
LD+ + +K++ L VT I + E + D I +++ GQ++ G
Sbjct: 173 LDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 231
Query: 427 --------------PRDNVLE------FFEHMGFKCPERKGVADFLQEVTSK 458
P N+LE + E GF+ + + D L++ K
Sbjct: 232 LRPNSVFVATFIGAPEMNILEVSVGDGYLEGRGFRIELPQDLMDLLKDYVGK 283
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 110/270 (40%), Gaps = 52/270 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V + KD++ + + +GP G GK+TL+ +AG + SG + +N+ P
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL---ETITSGDLFIGEKRMNDTPP 72
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R + Q + ++V E + F G+K
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSF------------------------GLK------- 101
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+AG + ++ V ++ + A + D + +SGGQ++RV G LV +
Sbjct: 102 ------LAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPS 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V +D+ + LD++ Q+ + ++ L TMI + E L D I++L G++
Sbjct: 154 VFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 212
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G LE + + P + VA F+
Sbjct: 213 AQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 110/249 (44%), Gaps = 41/249 (16%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+L V+ VKP + +LG G+GK+TLM L +L R G++ E++E R
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPER--GRV-----EVDEL-DVR 408
Query: 246 TCAYISQHDLH-HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
T + DL H +ET+ FSG + +E + D D +
Sbjct: 409 T---VKLKDLRGHISAVPQETVLFSG---------------TIKENLKWGREDATDDEIV 450
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+A +A + D+ I+ L D+ V + R SGGQK+R++ LV VL
Sbjct: 451 EAAKIAQ-----IHDF---IISLPEGYDSRV-ERGGRNFSGGQKQRLSIARALVKKPKVL 501
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+D+ ++ +D T +I LK+ +I Q P T L D I++L EG++
Sbjct: 502 ILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT---QKIP-TALLADKILVLHEGKVAG 557
Query: 425 QGPRDNVLE 433
G +LE
Sbjct: 558 FGTHKELLE 566
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
DT++G E +SGGQ++RV L+ A VL +DE ++ LD+ + I L ++
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
V +I L T + D+I+++ EG+I+ +G ++L
Sbjct: 530 KTVLVIAHRL----STIEQADEILVVDEGEIIERGRHADLL 566
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 48/257 (18%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R V L++++ + + L+G G+GK+T+ + D G+I GH+L E+
Sbjct: 354 RDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREY 410
Query: 242 VP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ A +SQ ++H TV + ++ R E + SR + + +
Sbjct: 411 TLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE---QYSREQIEEAARMAY 458
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
+D K +D DT++G+ G+ SGGQ++R+
Sbjct: 459 AMDFINK---------------------MDNGLDTVIGEN---GVLLSGGQRQRIAIARA 494
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+ + +L +DE ++ LD+ + I L ++ +I L T + D+I++
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEKADEIVV 550
Query: 417 LSEGQIVYQGPRDNVLE 433
+ +G IV +G +++LE
Sbjct: 551 VEDGVIVERGTHNDLLE 567
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
DT+VG++ + +SGG+++R+ L+ ++ DE ++ LDS T + ++ V
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY----LFQKAVED 200
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEF 434
L + ++ T + IILL++G+IV +G ++L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 46/256 (17%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V++L+ ++ + P ++T L+GP G+GK+T+ AL L + GK+ G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQP--TGGKVLLDGEPLVQY- 86
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
H LH + VG L R G+ P ++
Sbjct: 87 --------DHHYLHT-------------QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ AVA+ S D+ I G DT VG E +SGGQ++ V L+
Sbjct: 126 -ITAVAM----ESGAHDF---ISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDIILL 417
+L +D+ ++ LD+ ++ + L + +L +T ++L + A I+ L
Sbjct: 177 LLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERA-------HHILFL 229
Query: 418 SEGQIVYQGPRDNVLE 433
EG + QG ++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 46/256 (17%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V++L+ ++ + P ++T L+GP G+GK+T+ AL L + GK+ G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQP--TGGKVLLDGEPLVQY- 86
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
H LH + VG L R G+ P ++
Sbjct: 87 --------DHHYLHT-------------QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ AVA+ S D+ I G DT VG E +SGGQ++ V L+
Sbjct: 126 -ITAVAM----ESGAHDF---ISGFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDIILL 417
+L +D ++ LD+ ++ + L + +L +T ++L + A I+ L
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFL 229
Query: 418 SEGQIVYQGPRDNVLE 433
EG + QG ++E
Sbjct: 230 KEGSVCEQGTHLQLME 245
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 53/251 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR- 245
L ++S V+ ++LGP GAGKT + +AG D SG+I G ++ + P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
A++ Q+ M V++ L+F R + DP K
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI--------------------KDP------K 106
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG---ISGGQKKRVTTGEMLVGTAN 362
V LD D + + R +SGG+++RV LV
Sbjct: 107 RV-------------------LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DE + LD T + L ++H + ++ + E + D I ++ +G++
Sbjct: 148 ILLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
Query: 423 VYQGPRDNVLE 433
+ G + + E
Sbjct: 207 IQVGKPEEIFE 217
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 54/256 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
++ DVS + M ++GP GAGK+TL+ L G L + G+ G LN + P+
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLLGQNLNSWQPKA 82
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
RT A + Q+ +V E + GR G++ R+ Q ++ A
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQM-GRAPYGGSQ-------DRQALQ-------QVMA 127
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG--- 359
+A+A + DY R +SGG+++RV +L
Sbjct: 128 QTDCLALAQR------DY--------------------RVLSGGEQQRVQLARVLAQLWQ 161
Query: 360 ---TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
T L++DE ++ LD + L+Q+ + + +L D I+L
Sbjct: 162 PQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRIML 220
Query: 417 LSEGQIVYQGPRDNVL 432
L++G++V G + VL
Sbjct: 221 LAQGKLVACGTPEEVL 236
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 111/252 (44%), Gaps = 40/252 (15%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK V L +V+ ++ +LGP GAGKTT M +AG D+ ++G++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFD----- 65
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDP 298
R A +G++ V R +G V + L L+ E
Sbjct: 66 ----DRLVA-------SNGKLIVPP----EDRKIGMVFQTWALYPNLTAFEN-------- 102
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
I + + ++ +E + V KIL + V + R +SGGQ++RV LV
Sbjct: 103 -IAFPLTNMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRELSGGQQQRVALARALV 156
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE + LD+ +K++ L VT++V PA + + + D + +L
Sbjct: 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV 215
Query: 419 EGQIVYQG-PRD 429
+G++V G P D
Sbjct: 216 KGKLVQVGKPED 227
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
+H ++ V+ILK ++ VK + L+G G GK+T + L +L L G ++
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRLYDPL--DGMVSI 449
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G ++ RT + VR + +GV ++ +L + E
Sbjct: 450 DGQDI------RT-------------INVR----YLREIIGVVSQEPVLFATTIAENIRY 486
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ D +D KAV A D+++K L DT+VG+ + +SGGQK+R+
Sbjct: 487 GREDVTMDEIEKAVKEAN-----AYDFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAI 537
Query: 354 GEMLVGTANVLYMDEISTGLDSST 377
LV +L +DE ++ LD+ +
Sbjct: 538 ARALVRNPKILLLDEATSALDTES 561
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 165 NMLESAL---GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
NMLE + G++ P++ S+ +L+ +S VK + L+G G GK+T++ L
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 222 GKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278
+G + G E+ + Q +SQ + + ++ E + + G +R
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAY-----GDNSR 1134
Query: 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338
E+ R K+A I ID SL Y +T VGD+
Sbjct: 1135 VVSYEEIVRAAKEANIHQ--FID-------------SLPDKY-----------NTRVGDK 1168
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
+ +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 1169 GTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
+H ++ V+ILK ++ VK + L+G G GK+T + L +L L G ++
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST-TVQLMQRLYDPL--DGMVSI 449
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G ++ RT + VR + +GV ++ +L + E
Sbjct: 450 DGQDI------RT-------------INVR----YLREIIGVVSQEPVLFATTIAENIRY 486
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ D +D KAV A D+++K L DT+VG+ + +SGGQK+R+
Sbjct: 487 GREDVTMDEIEKAVKEAN-----AYDFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAI 537
Query: 354 GEMLVGTANVLYMDEISTGLDSST 377
LV +L +DE ++ LD+ +
Sbjct: 538 ARALVRNPKILLLDEATSALDTES 561
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 165 NMLESAL---GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
NMLE + G++ P++ S+ +L+ +S VK + L+G G GK+T++ L
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083
Query: 222 GKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278
+G + G E+ + Q +SQ + + ++ E + + G +R
Sbjct: 1084 DP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAY-----GDNSR 1134
Query: 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338
E+ R K+A I ID SL Y +T VGD+
Sbjct: 1135 VVSYEEIVRAAKEANIHQ--FID-------------SLPDKY-----------NTRVGDK 1168
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
+ +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 1169 GTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 48/256 (18%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R V L++++ + + L+G G+GK+T+ + D G I GH+L E+
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREY 410
Query: 242 VP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ A +SQ ++H TV + ++ R E E SR + + +
Sbjct: 411 TLASLRNQVALVSQ-NVHLFNDTVANNIAYA--------RTE---EYSREQIEEAARMAY 458
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
+D K +D DT++G+ G+ SGGQ++R+
Sbjct: 459 AMDFINK---------------------MDNGLDTIIGEN---GVLLSGGQRQRIAIARA 494
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+ + +L +DE ++ LD+ + I L ++ +I L T + D+I++
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEQADEIVV 550
Query: 417 LSEGQIVYQGPRDNVL 432
+ +G IV +G +L
Sbjct: 551 VEDGIIVERGTHSELL 566
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 45/266 (16%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLML-------ALAGKLGKDLR 226
L + K+ ILK +S + +L G GAGKTTL+ A +G + +
Sbjct: 24 LDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83
Query: 227 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
GK+ Y + + + + + + + GE + + + + +GV Y+ + +
Sbjct: 84 XPGKVGYSAETVRQHIGFVSHSLLEK--FQEGERVIDVVISGAFKSIGV---YQDIDDEI 138
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
R E +LK++G A +G +S G
Sbjct: 139 RNEAHQ----------------------------LLKLVGXSAKAQQYIGY-----LSTG 165
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
+K+RV L G VL +DE + GLD + L + + + E
Sbjct: 166 EKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEE 225
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVL 432
F I+LL +GQ + QG +++L
Sbjct: 226 ITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 54/258 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L++VS ++ L+ G G+GK+TL+ +AG + SG + Y G +
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDG--------E 69
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY---ELLAELSRREKQAGIK---PDP 298
R Y +R R +G+ +Y + AE E +K PD
Sbjct: 70 RKKGY-----------EIR-------RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ +K ++ +GLD + D + +SGG+K+RV ++V
Sbjct: 112 DPVPLVKKA--------------MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIV 154
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE GLD + + +++ + ++++ + D +++L
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLE 212
Query: 419 EGQIVYQGPRDNVLEFFE 436
+G+ V+ G R LE ++
Sbjct: 213 KGKKVFDGTRMEFLEKYD 230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 103/254 (40%), Gaps = 47/254 (18%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ ILK +S V+P + L+GP G GK+T+ +AL + L G+I G E+ P
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTV-VALLERFYDTL--GGEIFIDGSEIKTLNP 1148
Query: 244 QRT---CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ T A +SQ + ++ E + + G+ P
Sbjct: 1149 EHTRSQIAIVSQEPTLF-DCSIAENIIY------------------------GLDPSSVT 1183
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEMLV 358
A ++ A + + + L +T VGD RG +SGGQK+R+ LV
Sbjct: 1184 MAQVEEAARLANIHNFIAE-------LPEGFETRVGD---RGTQLSGGQKQRIAIARALV 1233
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE ++ LD+ + + + L + +I L D I ++S
Sbjct: 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA----DCIAVVS 1289
Query: 419 EGQIVYQGPRDNVL 432
G I+ +G ++
Sbjct: 1290 NGTIIEKGTHTQLM 1303
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 57/262 (21%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASG 229
+H + V IL+ ++ V + L+G G GK+T++ L LR G
Sbjct: 421 VHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL-------LRYYDVLKG 473
Query: 230 KITYCG---HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
KIT G ++N ++ A +SQ T+ E + + TR E++A
Sbjct: 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGKEGI---TREEMVAACK 529
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--IS 344
+ IK P +T+VGD RG +S
Sbjct: 530 MANAEKFIKTLPN------------------------------GYNTLVGD---RGTQLS 556
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404
GGQK+R+ LV +L +DE ++ LD+ + + + L + T+I+A
Sbjct: 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST 615
Query: 405 PETYDLFDDIILLSEGQIVYQG 426
DL II GQ+V G
Sbjct: 616 IRNADL---IISCKNGQVVEVG 634
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 107/258 (41%), Gaps = 54/258 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L++VS ++ L+ G G+GK+TL+ +AG + SG + Y G +
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDG--------E 71
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY---ELLAELSRREKQAGIK---PDP 298
R Y +R R +G+ +Y + AE E +K PD
Sbjct: 72 RKKGY-----------EIR-------RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 113
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ +K ++ +GLD + D + +SGG+K+RV ++V
Sbjct: 114 DPVPLVKKA--------------MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIV 156
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE GLD + + +++ + ++++ + D +++L
Sbjct: 157 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS--HDIETVINHVDRVVVLE 214
Query: 419 EGQIVYQGPRDNVLEFFE 436
+G+ V+ G R LE ++
Sbjct: 215 KGKKVFDGTRMEFLEKYD 232
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 40/252 (15%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK V L +V+ ++ +LGP GAGKTT M +AG D+ ++G++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL---DVPSTGELYFD----- 65
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDP 298
R A +G++ V R +G V + L L+ E
Sbjct: 66 ----DRLVA-------SNGKLIVPP----EDRKIGMVFQTWALYPNLTAFEN-------- 102
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
I + + ++ +E + V KIL + V + R +SG Q++RV LV
Sbjct: 103 -IAFPLTNMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRELSGAQQQRVALARALV 156
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE + LD+ +K++ L VT++V PA + + + D + +L
Sbjct: 157 KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV 215
Query: 419 EGQIVYQG-PRD 429
+G++V G P D
Sbjct: 216 KGKLVQVGKPED 227
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 46/257 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+LKD++ +KP + L+GP G+GKTT++ L D G+I G ++ +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSS 426
Query: 245 -RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R+ I D TV+E L + G E + E ++ D F
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNP----GATDEEIKEAAKLTHS---------DHF 473
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+K + G ET L + G+++ S GQ++ + + +
Sbjct: 474 IKHLP-EGYETVLTDN----------------GEDL----SQGQRQLLAITRAFLANPKI 512
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ +D+ T I + +++ ++I+A + DL II+L +G+IV
Sbjct: 513 LILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNTIKNADL---IIVLRDGEIV 568
Query: 424 YQGPRDNVLEFFEHMGF 440
G D E + GF
Sbjct: 569 EMGKHD---ELIQKRGF 582
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 110/261 (42%), Gaps = 52/261 (19%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-- 243
ILKD++ ++ +G G GK+TL + L + D+ SG+I GH + +F+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTL-INLIPRF-YDV-TSGQILIDGHNIKDFLTGS 412
Query: 244 -QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ + Q ++ + TV+E + LG +P +
Sbjct: 413 LRNQIGLVQQDNILFSD-TVKENI-----LLG--------------------RPTATDEE 446
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGT 360
++A +A D+ I+ L DT VG+ RG+ SGGQK+R++ + +
Sbjct: 447 VVEAAKMANAH-----DF---IMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNN 495
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+L +DE ++ LD + +++ + +L ++ T D I+++ G
Sbjct: 496 PPILILDEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551
Query: 421 QIVYQGPRDNVLE---FFEHM 438
IV G ++ +EH+
Sbjct: 552 HIVETGTHRELIAKQGAYEHL 572
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 53/253 (20%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEFV 242
L+DVS V P + L+GP GAGK+T++ L R +SG I G ++++
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLL-------FRFYDISSGCIRIDGQDISQ-- 120
Query: 243 PQRTCAYISQHDLH-HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
++Q L H + ++T+ F+ + RY + AG + E++
Sbjct: 121 -------VTQASLRSHIGVVPQDTVLFND-TIADNIRYGRVT--------AG---NDEVE 161
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVG 359
A +A + + Y T VG+ RG+ SGG+K+RV ++
Sbjct: 162 AAAQAAGIHDAIMAFPEGY-----------RTQVGE---RGLKLSGGEKQRVAIARTILK 207
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
++ +DE ++ LD+S I L ++ ++ L T D I+++ +
Sbjct: 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL----STVVNADQILVIKD 263
Query: 420 GQIVYQGPRDNVL 432
G IV +G + +L
Sbjct: 264 GCIVERGRHEALL 276
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 109/257 (42%), Gaps = 48/257 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V++L+ ++ + P ++T L+GP G+GK+T+ AL L + GK+ G L ++
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQP--TGGKVLLDGEPLVQY- 86
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA-GIKPDPEID 301
H LH V + GR S RE A G+ P ++
Sbjct: 87 --------DHHYLHTQVAAVGQEPLLFGR--------------SFRENIAYGLTRTPTME 124
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ AVA+ S D+ I G DT VG E ++ GQ++ V L+
Sbjct: 125 E-ITAVAM----ESGAHDF---ISGFPQGYDTEVG-ETGNQLAVGQRQAVALARALIRKP 175
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLFDDIIL 416
+L +D ++ LD+ ++ + L + +L +T ++L + A I+
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILF 228
Query: 417 LSEGQIVYQGPRDNVLE 433
L EG + QG ++E
Sbjct: 229 LKEGSVCEQGTHLQLME 245
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 44/210 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R ILK +S VK ++G G+GK+TL+ L G L D GK+ G E++
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLL--DAPTEGKVFLEGKEVD-- 69
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE-LLAELSRREKQAGIKPDPEI 300
Y ++ +L R LG ++ L+ EL+ E I P
Sbjct: 70 -------YTNEKELSL----------LRNRKLGFVFQFHYLIPELTALENV--IVP---- 106
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG---ISGGQKKRVTTGEML 357
M + +E +Y+L LGL GD++ R +SGG+++RV L
Sbjct: 107 ---MLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARAL 155
Query: 358 VGTANVLYMDEISTGLDSSTTFQICK-FLK 386
+L+ DE + LDS+ T ++ FLK
Sbjct: 156 ANEPILLFADEPTGNLDSANTKRVMDIFLK 185
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 167 LESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR 226
+ +AL + HL S + + +L D+S + P + ++G G GKTTL+ LAG D
Sbjct: 1 MTAALHIGHLSKSFQNTP-VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-- 57
Query: 227 ASGKITYCGHEL-----NEFVPQRTCAYISQHDLHHGEMTVRETLDFS-----GRCLGVG 276
SG+I+ G + N V +R Y+ Q + +TV + + GR
Sbjct: 58 -SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQER 116
Query: 277 TRYELLAELSRREKQAGIKP 296
R E + EL+ + AG P
Sbjct: 117 QRIEAMLELTGISELAGRYP 136
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 91/256 (35%), Gaps = 55/256 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 245 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
Y Q EMTV E L C G P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---------------------ESPLN 116
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
F K +E +L+ L L D G+ +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDL 410
++ MDE G+ I + ++ H LD+ + +
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NY 219
Query: 411 FDDIILLSEGQIVYQG 426
D + ++ GQI+ +G
Sbjct: 220 IDHLYVMFNGQIIAEG 235
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 107/268 (39%), Gaps = 47/268 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
ILK V+ +V + L+GP GAGK+TL LAG + G+I G + E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDE 76
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
++ L + + ++ G + R L A+L R
Sbjct: 77 R----ARKGLF---LAFQYPVEVPGVTIANFLRLALQAKLGRE----------------- 112
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
V VA E L++L D ++ + + G SGG+KKR ++LV
Sbjct: 113 -VGVA--EFWTKVKKALELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166
Query: 366 MDEISTGLDSSTTFQICKFLKQM-------VHILDVTMIVALLQPAPETYDLFDDIILLS 418
+DE +GLD + + + M + I I+ +QP D + ++
Sbjct: 167 LDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP--------DKVHVMM 218
Query: 419 EGQIVYQGPRDNVLEFFEHMGFKCPERK 446
+G++V G + LE E G++ + K
Sbjct: 219 DGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 106
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 165 NMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
N E+ ++ L+ SKK + R LL GPPG GKT L LA+A +LG
Sbjct: 58 NAREACGVIVELIKSKKXA-------------GRAVLLAGPPGTGKTALALAIAQELG-- 102
Query: 225 LRASGKITYC 234
K+ +C
Sbjct: 103 ----SKVPFC 108
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 95/256 (37%), Gaps = 55/256 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 21 KALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 245 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
Y Q EMTV E L L+ E++ E P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLN 116
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
F K +E +L+ L L D G+ +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDL 410
++ MDE G+ I + ++ H LD+ + +
Sbjct: 172 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NY 219
Query: 411 FDDIILLSEGQIVYQG 426
D + ++ GQI+ +G
Sbjct: 220 IDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 95/256 (37%), Gaps = 55/256 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPA 77
Query: 245 RTCAY----ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
Y Q EMTV E L L+ E++ E P
Sbjct: 78 ELYHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLN 116
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
F K +E +L+ L L D G+ +SGGQ K V G L+
Sbjct: 117 SLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTN 171
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDL 410
++ MD+ G+ I + ++ H LD+ + +
Sbjct: 172 PKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NY 219
Query: 411 FDDIILLSEGQIVYQG 426
D + ++ GQI+ +G
Sbjct: 220 IDHLYVMFNGQIIAEG 235
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
R LL GPPG GKT L LA+A +LG K+ +C
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELG------SKVPFC 94
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 70/250 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELNEF 241
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C + +
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFC-SQFSWI 92
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+P T++E + F G Y+ E R + + +I
Sbjct: 93 MPG----------------TIKENIIF-------GVSYD---EYRYRSVIKACQLEEDIS 126
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
F + D +V E +SGGQ+ R++ + A
Sbjct: 127 KFAE-------------------------KDNIVLGEGGITLSGGQRARISLARAVYKDA 161
Query: 362 NVLYMDEISTGLDSSTTFQI-----CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T +I CK + IL VT + L+ A D I++
Sbjct: 162 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 213
Query: 417 LSEGQIVYQG 426
L EG + G
Sbjct: 214 LHEGSSYFYG 223
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 48/255 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +IL+D+S +P+ + GP G GK+T+ +L + + +G+IT G ++
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTI-FSLLERFYQP--TAGEITIDGQPIDNIS 70
Query: 243 PQR---TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ ++SQ D T+RE L + G++ D
Sbjct: 71 LENWRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEGDYT 105
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEML 357
+ + + +A S V + ++ +T VG+ RG ISGGQ++R+
Sbjct: 106 DEDLWQVLDLAFAR-SFVENMPDQL-------NTEVGE---RGVKISGGQRQRLAIARAF 154
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ +L +DE + LDS + + K L ++ +I L + D I +
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDA----DKIYFI 210
Query: 418 SEGQIVYQGPRDNVL 432
+GQI G + ++
Sbjct: 211 EKGQITGSGKHNELV 225
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 70/250 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELNEF 241
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C + +
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFC-SQFSWI 80
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+P T++E + F G Y+ E R + + +I
Sbjct: 81 MPG----------------TIKENIIF-------GVSYD---EYRYRSVIKACQLEEDIS 114
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
F + D +V E +SGGQ+ R++ + A
Sbjct: 115 KFAE-------------------------KDNIVLGEGGITLSGGQRARISLARAVYKDA 149
Query: 362 NVLYMDEISTGLDSSTTFQI-----CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T +I CK + IL VT + L+ A D I++
Sbjct: 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 201
Query: 417 LSEGQIVYQG 426
L EG + G
Sbjct: 202 LHEGSSYFYG 211
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 5/55 (9%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGH 236
+LKD++ ++ ++ + G GAGKT+L++ + G+L GK ++ SG+I++C
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK-IKHSGRISFCSQ 76
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKI-TYCGHELNEFVPQRTCAY 249
+KP + LL GPPG GKT L A+A +G + ASG + Y G + + AY
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESAR--IIREMFAY 269
Query: 250 ISQHD 254
+H+
Sbjct: 270 AKEHE 274
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 37/194 (19%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL+ +S V P + ++GP G+GK+TL LAG+ ++ G + + G +L P+
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPE- 73
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
D +G + + +Y + + G+ + +
Sbjct: 74 ---------------------DRAGEGIFMAFQYPV--------EIPGVSNQFFLQTALN 104
Query: 306 AV-AVAGQETSLVTDYVLKILGLDICADTMVGDEMRR----GISGGQKKRVTTGEMLVGT 360
AV + GQET D+ ++ I M D + R G SGG+KKR +M V
Sbjct: 105 AVRSYRGQETLDRFDF-QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 163
Query: 361 ANVLYMDEISTGLD 374
+ +DE +GLD
Sbjct: 164 PELCILDESDSGLD 177
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++RV+ L +VL DE ++ LD ++ + ++Q+ + +V +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
+ +I L +G+I +G + V F P+ + FL+
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 254
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 55/247 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
LK+V+ +K ++GP G+GK+T ML + G L K P
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDK-------------------PTEG 60
Query: 247 CAYISQ---HDLHHGEMTV--RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
YI +DL E+T R+ + F V ++ L+ L+ E + E+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALE-------NVELP 107
Query: 302 AFMK-AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
K A++G+E LK+ L+ + +SGGQ++RV L
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELE----ERFANHKPNQLSGGQQQRVAIARALANN 163
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-----DDII 415
++ D+ + LDS T +I + LK++ T++V T+D+ + II
Sbjct: 164 PPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDINVARFGERII 216
Query: 416 LLSEGQI 422
L +G++
Sbjct: 217 YLKDGEV 223
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGK 220
PS+ L GPPG GKT L A+A +
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANE 534
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGK 220
PS+ L GPPG GKT L A+A +
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANE 534
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 55/247 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
LK+V+ +K ++GP G+GK+T ML + G L K P
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDK-------------------PTEG 60
Query: 247 CAYISQ---HDLHHGEMTV--RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
YI +DL E+T R+ + F V ++ L+ L+ E + E+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGF------VFQQFNLIPLLTALE-------NVELP 107
Query: 302 AFMK-AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
K A++G+E LK+ L+ + +SGGQ++RV L
Sbjct: 108 LIFKYRGAMSGEERRKRALECLKMAELE----ERFANHKPNQLSGGQQQRVAIARALANN 163
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-----DDII 415
++ D+ + LDS T +I + LK++ T++V T+D+ + II
Sbjct: 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDINVARFGERII 216
Query: 416 LLSEGQI 422
L +G++
Sbjct: 217 YLKDGEV 223
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
VKP R LL GPPG GKT + A+A + G
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 37/194 (19%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL+ +S V P + ++GP G+GK+TL LAG+ ++ G + + G +L P+
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPE- 92
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
D +G + + +Y + + G+ + +
Sbjct: 93 ---------------------DRAGEGIFMAFQYPV--------EIPGVSNQFFLQTALN 123
Query: 306 AV-AVAGQETSLVTDYVLKILGLDICADTMVGDEMRR----GISGGQKKRVTTGEMLVGT 360
AV + GQET D+ ++ I M D + R G SGG+KKR +M V
Sbjct: 124 AVRSYRGQETLDRFDF-QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182
Query: 361 ANVLYMDEISTGLD 374
+ +DE +GLD
Sbjct: 183 PELCILDESDSGLD 196
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +RV L ++ DE ++ LD ++ +KQ+ + +TM+V +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 217
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
++ D ++ + G I+ +G +++ + +H
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +RV L ++ DE ++ LD ++ +KQ+ + +TM+V +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVV-VTH 196
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
++ D ++ + G I+ +G +++ + +H
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 231
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 181 KRSVRI-LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS 228
K+ +R+ L+ +P LL GPPG GKTTL +A +LG +LR +
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 181 KRSVRI-LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS 228
K+ +R+ L+ +P LL GPPG GKTTL +A +LG +LR +
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD---LRASGKITYCGH 236
+LK+++ ++ M + G G+GKT+L++ + G+L ++ SG++++C
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQ 106
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L +SG V+ + L+GP GAGK+TL+ AG G I + G L + +
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS----GKGSIQFAGQPLEAWSATKL 71
Query: 247 C---AYISQH 253
AY+SQ
Sbjct: 72 ALHRAYLSQQ 81
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 181 KRSVRI-LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS 228
K+ +R+ L+ +P LL GPPG GKTTL +A +LG +LR +
Sbjct: 21 KQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388
+SGGQ++RV L ++ DE + LDS T +I + LK++
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 179 SKKRSVRIL-KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
SKK S + KD SG+ R +L GPPG GKTT +A +LG D+
Sbjct: 61 SKKNSFKHAGKDGSGVF---RAAMLYGPPGIGKTTAAHLVAQELGYDI 105
>pdb|1C17|M Chain M, A1c12 Subcomplex Of F1fo Atp Synthase
Length = 177
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLI-----MMSLGGFVMAKDDIEPF 713
L + + H + LP R+V + +S LG FIL++ M +GGF + ++PF
Sbjct: 31 LLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIGGFT-KELTLQPF 89
Query: 714 LRWGYYISPMMYGQTSLL 731
W + ++ SLL
Sbjct: 90 NHWAFIPVNLILEGVSLL 107
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 33.9 bits (76), Expect = 0.37, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 56/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS-GKITYCGHELN-- 239
++ +K + V ++ L+G GAGKTT + A+AG +RA GKI + G ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL----VRAQKGKIIFNGQDITNK 73
Query: 240 --EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + A + + E+TV E L +R++K+ GIK D
Sbjct: 74 PAHVINRXGIALVPEGRRIFPELTVYENL--------------XXGAYNRKDKE-GIKRD 118
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
E ++ ++ +E LK LG +SGG+++ + G L
Sbjct: 119 LE---WIFSLFPRLKER-------LKQLG--------------GTLSGGEQQXLAIGRAL 154
Query: 358 VGTANVLYMDEISTGLDS---STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
+L DE S GL S F++ + + Q + T I+ + Q A +
Sbjct: 155 XSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ-----EGTTILLVEQNALGALKVAHYG 209
Query: 415 ILLSEGQIVYQGPRDNVLE 433
+L GQIV +G +L+
Sbjct: 210 YVLETGQIVLEGKASELLD 228
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 201 LLLGPPGAGKTTLMLALAGKLG 222
LLLGPPGAGK T + LA KLG
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLG 25
>pdb|2HC5|A Chain A, Solution Nmr Structure Of Protein Yvyc From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr482
Length = 117
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 62 IERL----PTYDRLKKGMLNQVLEDGKVVKHEVDVSNLA--VQDKKRLLESI---LKIVE 112
IERL P +DR + NQ D +V H+V +NLA V + +LLE LK
Sbjct: 3 IERLTTLQPVWDRYDTQIHNQKDNDNEVPVHQVSYTNLAEMVGEMNKLLEPSQVHLKFEL 62
Query: 113 ED--NEKFLKRIRHRTDRVGIEIP 134
D NE ++K I T+ V EIP
Sbjct: 63 HDKLNEYYVKVIEDSTNEVIREIP 86
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 201 LLLGPPGAGKTTLMLALAGKLG 222
LLLGPPGAGK T + LA KLG
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKLG 45
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
+G+ P+R LL GPPG GKT L A+A +
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGG+++RV LV +L +DE + +D T + + L+ + DV I+ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTH 185
Query: 403 PAPETYDLFDDIILLSEGQIVYQG 426
E L D++ ++ G+IV +G
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 186 ILKDVSGIVKPSRMTLLL--GPPGAGKTTLMLALAGKL 221
I+K + VK M LL GPPG GKTT LALA +L
Sbjct: 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 98/300 (32%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC--AYISQHDLHHGE 259
++GP GAGK+TL+ L G+L L SG++ HE C AYI QH H E
Sbjct: 704 VIGPNGAGKSTLINVLTGEL---LPTSGEVYT--HE--------NCRIAYIKQHAFAHIE 750
Query: 260 MTV-----------------RETLDFSGRCLGV-------------GTRYELLAELSRRE 289
+ RET+D + R + GT + SRR+
Sbjct: 751 SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 810
Query: 290 --------------KQAGIKPD--------------------------PEIDAFMKAVAV 309
+ G+K + E+D MK
Sbjct: 811 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVD--MKEALA 868
Query: 310 AGQETSLVTDYV---LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+GQ L + +LGLD +V RG+SGGQK ++ +++ +
Sbjct: 869 SGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVL 925
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
DE + LD + + K LK+ ++ + A T +L +++ + +G++ G
Sbjct: 926 DEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAG 219
+ P R LL GPPG GKT L+ A+A
Sbjct: 203 IDPPRGVLLYGPPGTGKTMLVKAVAN 228
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+ D++ S ++GP GAGK+TL+ L G+L L SG++ HE
Sbjct: 683 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL---LPTSGEVYT--HE--------N 729
Query: 247 C--AYISQHDLHHGEMTVRET 265
C AYI QH H E + +T
Sbjct: 730 CRIAYIKQHAFAHIESHLDKT 750
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+ D++ S ++GP GAGK+TL+ L G+L L SG++ HE
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL---LPTSGEVYT--HE--------N 735
Query: 247 C--AYISQHDLHHGEMTVRET 265
C AYI QH H E + +T
Sbjct: 736 CRIAYIKQHAFAHIESHLDKT 756
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 109/281 (38%), Gaps = 70/281 (24%)
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
G ++ + ++GP G GKTT + LAG + GK+ + T AY
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV---EEPTEGKVEW----------DLTVAYKP 423
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
Q+ E GT YELL++ ID+ +
Sbjct: 424 QYIKAEYE----------------GTVYELLSK---------------IDS-------SK 445
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
++ +LK LG+ D V D +SGG+ +RV L+ A++ +DE S
Sbjct: 446 LNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSA 500
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
LD + + ++ ++ + T +V +D+ I +S+ IV++G
Sbjct: 501 YLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVL-MIDYVSDRLIVFEGEPGRH 552
Query: 432 LEFFEHMGFKCPERKGVADFLQEV--TSKKDQEQYWFRKNQ 470
MG R+G+ FL V T ++D + R N+
Sbjct: 553 GRALPPMGM----REGMNRFLASVGITFRRDPDSGRPRANK 589
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 66/262 (25%)
Query: 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI------TYCGHELNEFVPQRT 246
IVK + ++GP G GKTT + LAG+L +L + G+EL + +
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER-- 170
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
L +GE+ + +KP +D KA
Sbjct: 171 --------LKNGEI------------------------------RPVVKPQ-YVDLLPKA 191
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTM-VGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
V +E D V K + + V D +SGG+ +RV L+ A+ +
Sbjct: 192 VKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF 251
Query: 366 MDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
DE S+ LD ++ + ++++ + +L V +A+L D D+I + G+
Sbjct: 252 FDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL-------DYLSDVIHVVYGE 304
Query: 422 I-VY------QGPRDNVLEFFE 436
VY +G R+ + EF +
Sbjct: 305 PGVYGIFSKPKGTRNGINEFLQ 326
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 108/281 (38%), Gaps = 70/281 (24%)
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
G ++ + ++GP G GKTT + LAG + GK+ + T AY
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV---EEPTEGKVEW----------DLTVAYKP 409
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
Q+ E GT YELL+++ + + F K
Sbjct: 410 QYIKAEYE----------------GTVYELLSKIDSSKLNSN---------FYKT----- 439
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
+LK LG+ D V D +SGG+ +RV L+ A++ +DE S
Sbjct: 440 --------ELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSA 486
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
LD + + ++ ++ + T +V +D+ I +S+ IV++G
Sbjct: 487 YLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVL-MIDYVSDRLIVFEGEPGRH 538
Query: 432 LEFFEHMGFKCPERKGVADFLQEV--TSKKDQEQYWFRKNQ 470
MG R+G+ FL V T ++D + R N+
Sbjct: 539 GRALPPMGM----REGMNRFLASVGITFRRDPDSGRPRANK 575
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 66/262 (25%)
Query: 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI------TYCGHELNEFVPQRT 246
IVK + ++GP G GKTT + LAG+L +L + G+EL + +
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER-- 156
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
L +GE+ + +KP +D KA
Sbjct: 157 --------LKNGEI------------------------------RPVVKPQ-YVDLLPKA 177
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTM-VGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
V +E D V K + + V D +SGG+ +RV L+ A+ +
Sbjct: 178 VKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF 237
Query: 366 MDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
DE S+ LD ++ + ++++ + +L V +A+L D D+I + G+
Sbjct: 238 FDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL-------DYLSDVIHVVYGE 290
Query: 422 I-VY------QGPRDNVLEFFE 436
VY +G R+ + EF +
Sbjct: 291 PGVYGIFSKPKGTRNGINEFLQ 312
>pdb|2A45|I Chain I, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|L Chain L, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
Length = 45
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL +K D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALA 218
+G+ P++ LL GPPG GKT L A+A
Sbjct: 48 TGLRAPAKGLLLFGPPGNGKTLLARAVA 75
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL +K D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLSTYQTKVDKD 39
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRAS 228
L V ++ +V +LK M L GPPG GKT+ +LAL +L G DL S
Sbjct: 36 LDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALTKELYGPDLMKS 90
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 181 KRSVRILKDVSGIVK-PSRM---TLLLGPPGAGKTTLMLALAGK 220
K V LKD S + +RM LL+GPPG GKT L A+AG+
Sbjct: 29 KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+LLG PG GKT+L AGK +DL +L E V +RT
Sbjct: 8 VLLGDPGVGKTSLASLFAGKQERDLH---------EQLGEDVYERT 44
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 160 LNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
L+ AL +++ G++ + +++ + +L+ + R L+ G PG GKT + + +A
Sbjct: 33 LDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92
Query: 220 KLGKD 224
LG D
Sbjct: 93 ALGPD 97
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLG----KDLRASGK--ITYCGHELNEFVPQRTCAYIS 251
R+T ++GP G+GK+ ++ A+ G K+LRAS K + + G +E +P AY+
Sbjct: 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAG---SENLPPAGSAYVE 81
Query: 252 QHDLHHG-EMTVRETLDFSG 270
+G E+TV L +G
Sbjct: 82 LVFEENGEEITVARELKRTG 101
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 341 RGISGGQKKRVTT------GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
RG+SGG++ ++ E+ G + ++DE + LD+ +I LK++ + V
Sbjct: 278 RGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 395 TMIVALLQPAPETYD 409
+ + + E +D
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGK 220
K + LL+GPPG GKT L A+AG+
Sbjct: 42 KIPKGVLLVGPPGTGKTLLAKAVAGE 67
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 37/85 (43%)
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
DY + + LD T + +SGGQ++ + + ++ +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQP 403
+ L + ++T++ QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 341 RGISGGQKKRVTT------GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
RG+SGG++ ++ E+ G + ++DE + LD+ +I LK++ + V
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKV 337
Query: 395 TMIVALLQPAPETYD 409
+ + + E +D
Sbjct: 338 IVFITHDREFSEAFD 352
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 27/118 (22%)
Query: 163 ALNMLESALGLLHLVPSKKRSVR------ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLA 216
A N A + +PSK ++ + K VS + P + L+ GP G+GK+T + A
Sbjct: 85 AFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDV--PRGLVLVTGPTGSGKSTTLAA 142
Query: 217 LAGKLGKDLRASGKITYCGHELN-----EFVPQRTCAYISQHDLHHGEMTVRETLDFS 269
+ L T H L EFV + ++Q ++H R+TL FS
Sbjct: 143 MLDYLNN--------TKYHHILTIEDPIEFVHESKKCLVNQREVH------RDTLGFS 186
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
G+V P+ + LL GPPG GKT L A+A + G
Sbjct: 40 GLVTPAGV-LLAGPPGCGKTLLAKAVANESG 69
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGK 220
PS+ L GPPG GKT L A+A +
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIANE 72
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 53 LLVGPPGVGKTHLARAVAGE 72
>pdb|1JY2|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY2|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|P Chain P, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
pdb|1JY3|S Chain S, Crystal Structure Of The Central Region Of Bovine
Fibrinogen (E5 Fragment) At 1.4 Angstroms Resolution
Length = 48
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE 462
Y RDN E G CP G+ADFL + D++
Sbjct: 1 YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKD 39
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 68 LLVGPPGVGKTHLARAVAGE 87
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGK 220
K + L++GPPG GKT L A+AG+
Sbjct: 43 KIPKGVLMVGPPGTGKTLLAKAIAGE 68
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V G+ + + LLG G GKT + + ++ K L + T G
Sbjct: 13 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQ 72
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRET 265
EL EF P Y +S +D + E V +T
Sbjct: 73 LYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQT 105
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 77 LLVGPPGVGKTHLARAVAGE 96
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
+G+ P + LL GPPG GKT + +A + G
Sbjct: 111 TGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V G+ + + LLG G GKT + + ++ K L + T G
Sbjct: 13 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQ 72
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRET 265
EL EF P Y +S +D + E V +T
Sbjct: 73 LYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQT 105
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALA 218
++P + LL GPPG GKT L A+A
Sbjct: 48 IEPPKGILLYGPPGTGKTLLAKAVA 72
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V G+ + + LLG G GKT + + ++ K L + T G
Sbjct: 13 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQ 72
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRET 265
EL EF P Y +S +D + E V +T
Sbjct: 73 LYSELKEFFPHNAVEYFVSYYDYYQPEAYVPQT 105
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V GI + + LLG G GKT + L ++ K L + T G
Sbjct: 19 PQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQ 78
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRETLDF 268
E EF P Y +S +D + E V +T F
Sbjct: 79 LYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTF 114
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGH 236
P + I K V GI + + LLG G GKT + L ++ K L + T G
Sbjct: 13 PQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQ 72
Query: 237 ---ELNEFVPQRTCAY-ISQHDLHHGEMTVRETLDF 268
E EF P Y +S +D + E V +T F
Sbjct: 73 LYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTF 108
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 201 LLLGPPGAGKTTLMLALAGK 220
LL+GPPG GKT L A+AG+
Sbjct: 77 LLVGPPGVGKTHLARAVAGE 96
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 188 KDVSGIVKP----SRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKI--TYCGHELN 239
K ++G+V+ R LLG G GKT M + LG+ + A KI E
Sbjct: 16 KAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFR 75
Query: 240 EFVPQRTCAY-ISQHDLHHGEMTV 262
E P+ Y IS +D + E V
Sbjct: 76 ELFPENAVEYFISYYDYYQPEAYV 99
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 188 KDVSGIVKP----SRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKI--TYCGHELN 239
K ++G+V+ R LLG G GKT M + LG+ + A KI E
Sbjct: 15 KAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFR 74
Query: 240 EFVPQRTCAY-ISQHDLHHGEMTV 262
E P+ Y IS +D + E V
Sbjct: 75 ELFPENAVEYFISYYDYYQPEAYV 98
>pdb|3ZEF|A Chain A, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|D Chain D, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 355
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
+ Y T M G S YFG L F+ LN MF G
Sbjct: 202 SYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFG 235
>pdb|3SBT|B Chain B, Crystal Structure Of A Aar2-prp8 Complex
pdb|3SBS|A Chain A, Crystal Structure Of Aar2 Protein
Length = 363
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
+ Y T M G S YFG L F+ LN MF G
Sbjct: 202 SYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFG 235
>pdb|4I43|A Chain A, Crystal Structure Of Prp8:aar2 Complex
Length = 384
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
+ Y T M G S YFG L F+ LN MF G
Sbjct: 202 SYYLNTVMLQGIFKNSSNYFGELQFAFLNAMFFG 235
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+L GPPG GKTTL +A D+ +T E+ E +
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAI 95
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 200 TLLLGPPGAGKTTLMLALAGKL 221
++LGP G+GKTTL+ A++G L
Sbjct: 33 VIILGPNGSGKTTLLRAISGLL 54
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 181 KRSVRILKDVSGIVK-PSRM---TLLLGPPGAGKTTLMLALAGK 220
K V LKD S + +RM LL+GPPG G T L A+AG+
Sbjct: 29 KEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGE 72
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGG K+RV L+ VL +DE ++ LD T I + LK++ +L +T+I
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFV--- 211
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEF 434
T+D+ L + ++Y G N++E+
Sbjct: 212 ----THDIAVAAELADKVAVIYGG---NLVEY 236
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALA 218
K + LLLGPPG GKT L A+A
Sbjct: 36 AKVPKGALLLGPPGCGKTLLAKAVA 60
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 202 LLGPPGAGKTTLMLALAGKLGK 223
L GPPG GKT+L ++A LG+
Sbjct: 113 LAGPPGVGKTSLAKSIAKSLGR 134
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL++ + ++KP + L G P AG T L GK G DL Y G+++ +
Sbjct: 21 ILQNNTHVIKPKKSVALSGVP-AGNTA--LCTVGKSGNDLH------YRGYDILDLAEH- 70
Query: 246 TCAYIS-QHDLHHGEMTVRETLD 267
C + H L HG++ R+ L+
Sbjct: 71 -CEFEEVAHLLIHGKLPTRDELN 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,188,888
Number of Sequences: 62578
Number of extensions: 948793
Number of successful extensions: 2518
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2277
Number of HSP's gapped (non-prelim): 266
length of query: 824
length of database: 14,973,337
effective HSP length: 107
effective length of query: 717
effective length of database: 8,277,491
effective search space: 5934961047
effective search space used: 5934961047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)