Query 003389
Match_columns 824
No_of_seqs 631 out of 3568
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 6E-143 1E-147 1353.1 72.8 771 36-809 19-801 (1470)
2 KOG0065 Pleiotropic drug resis 100.0 1E-141 3E-146 1265.3 52.0 718 51-813 12-746 (1391)
3 TIGR00956 3a01205 Pleiotropic 100.0 3E-107 6E-112 1031.5 66.7 654 114-802 4-699 (1394)
4 TIGR00955 3a01204 The Eye Pigm 100.0 5E-100 1E-104 903.1 58.7 574 181-798 35-614 (617)
5 PLN03211 ABC transporter G-25; 100.0 1E-98 2E-103 893.0 61.4 610 133-798 35-659 (659)
6 KOG0061 Transporter, ABC super 100.0 2.7E-99 6E-104 889.6 54.9 587 133-798 21-609 (613)
7 PLN03140 ABC transporter G fam 100.0 2.2E-97 5E-102 938.6 63.2 596 131-799 861-1468(1470)
8 TIGR00956 3a01205 Pleiotropic 100.0 3E-91 6.6E-96 885.4 62.1 564 183-798 775-1391(1394)
9 KOG0065 Pleiotropic drug resis 100.0 7.9E-92 1.7E-96 838.3 36.0 564 182-798 802-1384(1391)
10 COG1126 GlnQ ABC-type polar am 100.0 1.2E-47 2.6E-52 384.2 18.0 222 182-455 13-239 (240)
11 COG1135 AbcC ABC-type metal io 100.0 8.8E-46 1.9E-50 387.9 19.0 225 183-458 18-248 (339)
12 COG3839 MalK ABC-type sugar tr 100.0 2.4E-45 5.2E-50 398.0 19.6 217 186-453 18-235 (338)
13 COG1131 CcmA ABC-type multidru 100.0 9E-45 2E-49 393.2 22.2 221 175-438 9-231 (293)
14 COG3842 PotA ABC-type spermidi 100.0 6.6E-45 1.4E-49 396.5 18.7 223 183-455 17-240 (352)
15 COG1120 FepC ABC-type cobalami 100.0 1.8E-44 3.8E-49 377.9 16.6 211 183-432 14-227 (258)
16 COG3638 ABC-type phosphate/pho 100.0 3.5E-44 7.5E-49 363.6 17.9 226 173-433 6-237 (258)
17 COG1125 OpuBA ABC-type proline 100.0 1E-43 2.2E-48 362.3 18.9 208 183-433 13-225 (309)
18 COG1136 SalX ABC-type antimicr 100.0 4.4E-43 9.6E-48 360.7 20.9 195 184-422 18-220 (226)
19 COG1116 TauB ABC-type nitrate/ 100.0 4E-43 8.6E-48 361.5 19.4 195 184-423 16-212 (248)
20 COG1118 CysA ABC-type sulfate/ 100.0 4.1E-43 8.9E-48 366.9 19.2 225 182-455 13-241 (345)
21 COG2274 SunT ABC-type bacterio 100.0 1.1E-42 2.4E-47 412.1 25.2 258 97-433 436-696 (709)
22 COG4555 NatA ABC-type Na+ tran 100.0 2.4E-43 5.1E-48 348.7 16.3 218 172-433 3-222 (245)
23 COG1127 Ttg2A ABC-type transpo 100.0 4.9E-43 1.1E-47 356.1 18.4 210 182-433 19-235 (263)
24 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-42 6.1E-47 383.2 22.6 207 183-432 16-223 (356)
25 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.4E-42 9.6E-47 358.1 20.9 207 185-432 18-226 (254)
26 KOG0058 Peptide exporter, ABC 100.0 6E-42 1.3E-46 392.4 22.8 249 103-433 437-691 (716)
27 TIGR03265 PhnT2 putative 2-ami 100.0 6.5E-42 1.4E-46 379.9 22.3 218 184-452 17-235 (353)
28 TIGR02314 ABC_MetN D-methionin 100.0 8.8E-42 1.9E-46 376.7 23.2 206 184-432 18-229 (343)
29 PRK11432 fbpC ferric transport 100.0 7.3E-42 1.6E-46 379.0 22.1 218 184-452 19-237 (351)
30 TIGR03258 PhnT 2-aminoethylpho 100.0 2.1E-41 4.5E-46 376.6 22.6 206 184-432 18-227 (362)
31 COG1117 PstB ABC-type phosphat 100.0 5.3E-42 1.2E-46 342.1 16.0 223 182-452 18-248 (253)
32 PRK09452 potA putrescine/sperm 100.0 2.2E-41 4.8E-46 377.7 22.6 219 184-453 27-246 (375)
33 PRK13537 nodulation ABC transp 100.0 3.7E-41 8.1E-46 367.6 21.8 206 184-433 20-227 (306)
34 TIGR01186 proV glycine betaine 100.0 9.8E-41 2.1E-45 370.5 24.1 208 182-432 4-218 (363)
35 COG3840 ThiQ ABC-type thiamine 100.0 3.4E-41 7.5E-46 328.3 17.5 201 189-432 17-218 (231)
36 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-40 2.7E-45 350.1 23.1 206 184-431 13-224 (235)
37 COG2884 FtsE Predicted ATPase 100.0 6.3E-41 1.4E-45 329.0 19.2 209 175-427 6-220 (223)
38 PRK11607 potG putrescine trans 100.0 7.1E-41 1.5E-45 374.2 22.3 218 184-452 32-250 (377)
39 PRK10851 sulfate/thiosulfate t 100.0 8.4E-41 1.8E-45 371.0 22.7 222 184-452 15-237 (353)
40 PRK11000 maltose/maltodextrin 100.0 1.4E-40 3E-45 371.7 22.8 206 184-432 16-222 (369)
41 PRK11174 cysteine/glutathione 100.0 4.2E-40 9.2E-45 389.9 27.7 207 184-433 363-572 (588)
42 TIGR01188 drrA daunorubicin re 100.0 1.8E-40 3.8E-45 361.9 22.3 207 183-433 5-213 (302)
43 COG1124 DppF ABC-type dipeptid 100.0 1.1E-40 2.4E-45 340.5 19.2 204 185-433 21-231 (252)
44 COG0411 LivG ABC-type branched 100.0 5.8E-41 1.3E-45 342.8 16.6 229 173-433 7-239 (250)
45 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-40 2.8E-45 348.0 19.2 207 184-433 17-228 (235)
46 cd03259 ABC_Carb_Solutes_like 100.0 2.7E-40 5.8E-45 342.3 21.2 200 184-426 13-213 (213)
47 COG0410 LivF ABC-type branched 100.0 2.6E-40 5.7E-45 335.6 20.4 209 181-433 13-226 (237)
48 PRK11153 metN DL-methionine tr 100.0 3.6E-40 7.7E-45 365.3 22.8 206 184-432 18-229 (343)
49 COG1137 YhbG ABC-type (unclass 100.0 2.4E-41 5.3E-46 334.1 11.5 217 174-433 8-228 (243)
50 KOG0057 Mitochondrial Fe/S clu 100.0 3.5E-40 7.7E-45 366.3 22.1 229 129-433 343-574 (591)
51 KOG0055 Multidrug/pheromone ex 100.0 3.2E-38 6.9E-43 379.7 40.4 258 98-433 315-576 (1228)
52 PRK13536 nodulation factor exp 100.0 4.5E-40 9.7E-45 363.5 22.4 207 183-433 53-261 (340)
53 PRK13637 cbiO cobalt transport 100.0 7.9E-40 1.7E-44 354.3 23.9 218 184-444 20-248 (287)
54 cd03265 ABC_DrrA DrrA is the A 100.0 5.1E-40 1.1E-44 342.1 21.0 205 184-431 13-219 (220)
55 cd03258 ABC_MetN_methionine_tr 100.0 7.2E-40 1.6E-44 343.7 21.8 204 185-431 19-228 (233)
56 COG1132 MdlB ABC-type multidru 100.0 1.1E-39 2.4E-44 384.8 26.0 254 98-433 296-552 (567)
57 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.6E-40 2.1E-44 340.0 22.3 201 184-429 17-219 (220)
58 cd03296 ABC_CysA_sulfate_impor 100.0 1E-39 2.2E-44 344.1 22.6 209 184-431 15-224 (239)
59 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-39 2.3E-44 342.9 22.0 214 184-431 13-230 (236)
60 cd03301 ABC_MalK_N The N-termi 100.0 1.1E-39 2.3E-44 337.7 21.6 200 184-426 13-213 (213)
61 cd03256 ABC_PhnC_transporter A 100.0 1.3E-39 2.8E-44 343.3 22.3 214 184-432 14-233 (241)
62 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-39 2.3E-44 356.0 22.0 206 184-433 17-224 (303)
63 TIGR00960 3a0501s02 Type II (G 100.0 5.5E-40 1.2E-44 340.7 18.7 195 184-422 16-216 (216)
64 PRK13634 cbiO cobalt transport 100.0 1.3E-39 2.9E-44 353.0 22.5 219 184-445 20-250 (290)
65 cd03218 ABC_YhbG The ABC trans 100.0 1.7E-39 3.6E-44 340.6 22.2 204 184-431 13-220 (232)
66 cd03263 ABC_subfamily_A The AB 100.0 1.1E-39 2.4E-44 339.3 20.5 203 184-431 15-219 (220)
67 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.5E-39 5.4E-44 347.3 23.5 208 182-432 35-249 (269)
68 PRK13647 cbiO cobalt transport 100.0 2E-39 4.3E-44 349.0 22.7 216 184-443 18-239 (274)
69 PRK13643 cbiO cobalt transport 100.0 2.4E-39 5.3E-44 350.7 23.3 224 185-452 20-255 (288)
70 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.2E-39 9.1E-44 387.8 27.9 253 97-433 418-673 (686)
71 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.2E-39 4.8E-44 342.1 22.4 206 184-432 14-224 (242)
72 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.2E-39 2.5E-44 338.6 19.6 195 184-422 17-218 (218)
73 TIGR02315 ABC_phnC phosphonate 100.0 1.7E-39 3.7E-44 342.9 21.0 214 183-431 14-233 (243)
74 COG4988 CydD ABC-type transpor 100.0 5.3E-39 1.2E-43 362.3 26.2 208 183-433 333-543 (559)
75 PRK10070 glycine betaine trans 100.0 4.8E-39 1E-43 360.9 25.7 218 171-432 29-253 (400)
76 KOG0056 Heavy metal exporter H 100.0 4.5E-40 9.8E-45 357.5 16.2 257 97-433 502-761 (790)
77 PRK13650 cbiO cobalt transport 100.0 2.8E-39 6E-44 348.7 22.2 217 184-444 20-243 (279)
78 cd03224 ABC_TM1139_LivF_branch 100.0 3.2E-39 6.8E-44 336.1 21.6 203 184-432 13-220 (222)
79 TIGR03522 GldA_ABC_ATP gliding 100.0 2.6E-39 5.6E-44 352.6 21.6 206 183-433 14-221 (301)
80 PRK11629 lolD lipoprotein tran 100.0 4E-39 8.6E-44 338.3 22.2 201 184-428 22-229 (233)
81 cd03269 ABC_putative_ATPase Th 100.0 2.2E-39 4.8E-44 334.7 19.8 198 184-426 13-210 (210)
82 cd03268 ABC_BcrA_bacitracin_re 100.0 2.8E-39 6.1E-44 333.5 20.2 195 184-426 13-208 (208)
83 cd03226 ABC_cobalt_CbiO_domain 100.0 3E-39 6.5E-44 332.6 20.1 192 184-423 13-205 (205)
84 PRK11831 putative ABC transpor 100.0 5E-39 1.1E-43 345.0 22.1 207 184-432 20-232 (269)
85 cd03260 ABC_PstB_phosphate_tra 100.0 3.5E-39 7.5E-44 337.2 20.2 204 184-430 13-226 (227)
86 PRK13631 cbiO cobalt transport 100.0 1.9E-38 4.2E-43 348.0 26.8 219 184-447 39-282 (320)
87 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7.4E-39 1.6E-43 336.9 22.4 205 184-432 14-220 (236)
88 PRK13636 cbiO cobalt transport 100.0 5.4E-39 1.2E-43 347.2 21.4 218 184-444 19-245 (283)
89 TIGR03375 type_I_sec_LssB type 100.0 1.2E-38 2.6E-43 384.3 26.9 258 97-433 428-688 (694)
90 PRK11176 lipid transporter ATP 100.0 1.3E-38 2.9E-43 376.7 26.3 209 184-433 356-567 (582)
91 PRK13635 cbiO cobalt transport 100.0 9.6E-39 2.1E-43 344.5 22.8 217 184-444 20-243 (279)
92 cd03266 ABC_NatA_sodium_export 100.0 5.2E-39 1.1E-43 333.7 19.9 198 185-426 19-218 (218)
93 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9.5E-39 2.1E-43 386.2 25.0 261 97-433 436-700 (710)
94 cd03234 ABCG_White The White s 100.0 1.2E-38 2.7E-43 333.1 22.4 203 184-426 20-226 (226)
95 KOG0055 Multidrug/pheromone ex 100.0 9.9E-39 2.1E-43 384.0 24.5 258 97-433 951-1213(1228)
96 TIGR02673 FtsE cell division A 100.0 6.5E-39 1.4E-43 332.0 19.9 194 184-421 15-214 (214)
97 cd03292 ABC_FtsE_transporter F 100.0 6.5E-39 1.4E-43 331.9 19.7 195 184-422 14-214 (214)
98 PRK13651 cobalt transporter AT 100.0 8.8E-39 1.9E-43 348.6 21.7 217 184-444 20-268 (305)
99 PRK09536 btuD corrinoid ABC tr 100.0 7.6E-39 1.7E-43 359.5 21.8 210 183-432 15-227 (402)
100 PRK13652 cbiO cobalt transport 100.0 1.6E-38 3.5E-43 342.4 23.5 206 184-432 17-226 (277)
101 PRK11264 putative amino-acid A 100.0 1E-38 2.3E-43 338.4 21.6 204 184-431 16-231 (250)
102 PRK15079 oligopeptide ABC tran 100.0 1.2E-38 2.6E-43 351.0 22.8 208 184-432 34-250 (331)
103 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-38 2.5E-43 336.2 21.6 205 184-432 14-224 (240)
104 cd03257 ABC_NikE_OppD_transpor 100.0 1.6E-38 3.5E-43 331.9 22.6 201 185-426 19-228 (228)
105 TIGR03415 ABC_choXWV_ATP choli 100.0 1.3E-38 2.8E-43 355.2 23.1 209 181-432 34-253 (382)
106 TIGR01193 bacteriocin_ABC ABC- 100.0 2.2E-38 4.7E-43 382.9 26.5 257 97-433 438-697 (708)
107 PRK13644 cbiO cobalt transport 100.0 2E-38 4.3E-43 341.2 23.2 204 184-432 15-223 (274)
108 PRK13646 cbiO cobalt transport 100.0 1.9E-38 4E-43 343.5 23.0 205 184-432 20-234 (286)
109 TIGR02211 LolD_lipo_ex lipopro 100.0 1.2E-38 2.6E-43 331.7 20.7 196 184-423 18-220 (221)
110 PRK11248 tauB taurine transpor 100.0 1.5E-38 3.3E-43 338.6 21.8 201 184-429 14-216 (255)
111 TIGR03410 urea_trans_UrtE urea 100.0 1.7E-38 3.8E-43 332.6 21.2 202 184-431 13-219 (230)
112 COG4987 CydC ABC-type transpor 100.0 9.3E-39 2E-43 354.9 19.9 208 184-433 351-561 (573)
113 PRK11160 cysteine/glutathione 100.0 5.4E-38 1.2E-42 370.7 27.5 207 184-433 353-562 (574)
114 PRK13639 cbiO cobalt transport 100.0 3E-38 6.6E-43 339.9 23.1 216 184-443 15-239 (275)
115 PRK13632 cbiO cobalt transport 100.0 7.9E-38 1.7E-42 336.0 26.2 205 184-432 22-230 (271)
116 PRK10895 lipopolysaccharide AB 100.0 2.1E-38 4.5E-43 334.5 21.3 206 184-432 16-225 (241)
117 PRK13633 cobalt transporter AT 100.0 2.8E-38 6.1E-43 341.0 22.5 217 184-444 23-247 (280)
118 PRK10908 cell division protein 100.0 1.9E-38 4.1E-43 330.7 20.3 196 184-423 15-216 (222)
119 TIGR01257 rim_protein retinal- 100.0 1.8E-36 4E-41 386.7 42.7 219 172-435 930-1151(2272)
120 PRK10790 putative multidrug tr 100.0 7.6E-38 1.7E-42 371.0 28.1 207 184-433 354-563 (592)
121 cd03264 ABC_drug_resistance_li 100.0 1.5E-38 3.3E-43 328.7 19.3 197 184-426 13-211 (211)
122 PRK13648 cbiO cobalt transport 100.0 4.2E-38 9.1E-43 337.7 23.3 216 184-443 22-244 (269)
123 PRK09473 oppD oligopeptide tra 100.0 1.1E-37 2.5E-42 343.3 27.3 213 184-432 29-250 (330)
124 PRK13548 hmuV hemin importer A 100.0 3E-38 6.4E-43 336.9 21.9 206 184-432 15-229 (258)
125 PRK11247 ssuB aliphatic sulfon 100.0 2.4E-38 5.2E-43 337.3 21.1 195 184-429 25-219 (257)
126 TIGR00958 3a01208 Conjugate Tr 100.0 6.6E-38 1.4E-42 378.2 27.2 206 184-433 494-702 (711)
127 PRK11144 modC molybdate transp 100.0 2.5E-38 5.5E-43 351.7 21.7 207 189-452 16-229 (352)
128 PRK11614 livF leucine/isoleuci 100.0 2.4E-38 5.3E-43 333.1 20.5 203 184-432 18-225 (237)
129 PRK13641 cbiO cobalt transport 100.0 3.3E-38 7.1E-43 341.7 21.7 205 184-432 20-233 (287)
130 PRK11300 livG leucine/isoleuci 100.0 3.4E-38 7.5E-43 335.4 21.4 221 184-432 18-242 (255)
131 TIGR03411 urea_trans_UrtD urea 100.0 4.2E-38 9.2E-43 332.2 21.8 211 184-431 15-229 (242)
132 PRK10584 putative ABC transpor 100.0 4.1E-38 9E-43 329.3 21.4 197 185-425 24-227 (228)
133 TIGR03005 ectoine_ehuA ectoine 100.0 6.8E-38 1.5E-42 332.8 23.3 205 184-431 13-234 (252)
134 PRK13649 cbiO cobalt transport 100.0 7.7E-38 1.7E-42 337.6 23.8 205 184-432 20-233 (280)
135 PRK13638 cbiO cobalt transport 100.0 6.7E-38 1.5E-42 336.5 23.1 205 184-432 14-224 (271)
136 TIGR02769 nickel_nikE nickel i 100.0 5.3E-38 1.1E-42 336.3 22.1 206 184-432 24-239 (265)
137 TIGR03740 galliderm_ABC gallid 100.0 6E-38 1.3E-42 327.2 21.9 197 184-429 13-209 (223)
138 PRK11308 dppF dipeptide transp 100.0 6.3E-38 1.4E-42 345.0 23.2 207 184-432 28-243 (327)
139 COG4175 ProV ABC-type proline/ 100.0 1.5E-38 3.3E-43 332.8 17.1 221 184-455 41-268 (386)
140 TIGR00972 3a0107s01c2 phosphat 100.0 6.3E-38 1.4E-42 332.1 22.2 207 184-432 14-231 (247)
141 cd03233 ABC_PDR_domain1 The pl 100.0 1.2E-37 2.6E-42 320.4 23.6 182 183-426 19-202 (202)
142 PRK13640 cbiO cobalt transport 100.0 6E-38 1.3E-42 338.8 22.3 208 184-432 20-231 (282)
143 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.2E-38 1.1E-42 324.8 20.9 195 189-426 16-211 (211)
144 TIGR02770 nickel_nikD nickel i 100.0 7.5E-38 1.6E-42 328.1 22.3 204 186-432 1-214 (230)
145 cd03300 ABC_PotA_N PotA is an 100.0 8E-38 1.7E-42 328.3 22.5 206 184-432 13-219 (232)
146 PRK11022 dppD dipeptide transp 100.0 9.8E-38 2.1E-42 343.4 24.1 210 184-432 20-242 (326)
147 cd03267 ABC_NatA_like Similar 100.0 7.3E-38 1.6E-42 329.6 22.0 203 181-426 31-236 (236)
148 PRK14273 phosphate ABC transpo 100.0 4.9E-38 1.1E-42 334.3 20.6 207 184-432 20-237 (254)
149 PRK14268 phosphate ABC transpo 100.0 7.7E-38 1.7E-42 333.7 22.0 205 184-431 25-240 (258)
150 TIGR01184 ntrCD nitrate transp 100.0 7.3E-38 1.6E-42 328.4 21.4 202 187-431 1-202 (230)
151 cd03225 ABC_cobalt_CbiO_domain 100.0 5.9E-38 1.3E-42 324.2 20.1 194 184-421 14-211 (211)
152 PRK10619 histidine/lysine/argi 100.0 6.9E-38 1.5E-42 333.8 21.0 205 184-432 18-240 (257)
153 PRK10771 thiQ thiamine transpo 100.0 1E-37 2.2E-42 327.4 22.0 202 188-432 16-218 (232)
154 PRK14250 phosphate ABC transpo 100.0 8.7E-38 1.9E-42 330.0 21.6 201 184-432 16-220 (241)
155 cd03235 ABC_Metallic_Cations A 100.0 5.5E-38 1.2E-42 325.0 19.6 200 184-426 12-213 (213)
156 TIGR02142 modC_ABC molybdenum 100.0 1.1E-37 2.3E-42 347.0 23.3 199 189-432 15-220 (354)
157 COG4618 ArpD ABC-type protease 100.0 1.3E-37 2.8E-42 342.8 23.3 258 98-436 303-563 (580)
158 PRK13645 cbiO cobalt transport 100.0 1.2E-37 2.7E-42 337.5 22.7 205 185-432 25-239 (289)
159 TIGR01978 sufC FeS assembly AT 100.0 1.5E-37 3.2E-42 328.0 22.6 213 184-432 13-233 (243)
160 cd03299 ABC_ModC_like Archeal 100.0 1.6E-37 3.4E-42 326.9 22.7 204 186-432 14-218 (235)
161 PRK11124 artP arginine transpo 100.0 7.5E-38 1.6E-42 330.4 20.2 204 184-431 15-228 (242)
162 PRK14267 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 331.0 21.6 209 184-432 17-236 (253)
163 PRK14247 phosphate ABC transpo 100.0 1.9E-37 4.2E-42 328.8 23.0 209 184-432 16-233 (250)
164 TIGR02203 MsbA_lipidA lipid A 100.0 2.1E-37 4.6E-42 365.6 25.9 256 97-432 297-555 (571)
165 PRK10575 iron-hydroxamate tran 100.0 7.3E-38 1.6E-42 335.2 19.9 209 184-431 24-235 (265)
166 PRK15112 antimicrobial peptide 100.0 1.3E-37 2.8E-42 333.6 21.9 206 184-432 26-238 (267)
167 PRK09984 phosphonate/organopho 100.0 9E-38 2E-42 333.8 20.5 216 184-431 17-240 (262)
168 PRK10253 iron-enterobactin tra 100.0 1E-37 2.2E-42 334.1 20.8 210 184-432 20-232 (265)
169 TIGR01277 thiQ thiamine ABC tr 100.0 2E-37 4.3E-42 321.1 22.3 199 186-427 13-212 (213)
170 PRK14242 phosphate transporter 100.0 1.8E-37 3.9E-42 329.7 22.5 210 184-431 19-235 (253)
171 TIGR01846 type_I_sec_HlyB type 100.0 2.8E-37 6E-42 372.4 26.5 257 97-433 421-680 (694)
172 PTZ00265 multidrug resistance 100.0 2E-37 4.3E-42 395.1 26.5 212 184-432 1181-1451(1466)
173 PRK13657 cyclic beta-1,2-gluca 100.0 4.6E-37 1E-41 364.0 27.8 208 184-433 348-558 (588)
174 PRK11231 fecE iron-dicitrate t 100.0 9.6E-38 2.1E-42 332.3 19.8 208 184-431 15-225 (255)
175 cd03262 ABC_HisP_GlnQ_permease 100.0 8.6E-38 1.9E-42 323.3 18.6 195 184-422 13-213 (213)
176 TIGR01842 type_I_sec_PrtD type 100.0 5.3E-37 1.1E-41 360.3 27.6 255 97-432 284-541 (544)
177 COG4559 ABC-type hemin transpo 100.0 1.3E-37 2.8E-42 310.2 18.9 208 183-432 13-229 (259)
178 TIGR00968 3a0106s01 sulfate AB 100.0 2.5E-37 5.5E-42 325.6 22.0 206 184-432 13-219 (237)
179 PRK10418 nikD nickel transport 100.0 3.6E-37 7.7E-42 327.8 23.3 207 184-432 16-229 (254)
180 PRK13642 cbiO cobalt transport 100.0 3.3E-37 7.2E-42 332.2 23.0 216 184-443 20-242 (277)
181 TIGR03873 F420-0_ABC_ATP propo 100.0 2.1E-37 4.5E-42 330.0 21.2 208 184-431 14-224 (256)
182 PRK10789 putative multidrug tr 100.0 7.6E-37 1.6E-41 360.7 27.4 208 184-433 328-538 (569)
183 PRK14256 phosphate ABC transpo 100.0 4.7E-37 1E-41 326.3 23.2 211 184-431 17-234 (252)
184 PRK14270 phosphate ABC transpo 100.0 3.8E-37 8.2E-42 326.9 22.3 207 184-432 17-234 (251)
185 PRK11701 phnK phosphonate C-P 100.0 2.9E-37 6.2E-42 329.2 21.4 207 184-432 19-240 (258)
186 PRK14239 phosphate transporter 100.0 4.7E-37 1E-41 326.2 22.8 211 184-432 18-235 (252)
187 PRK14237 phosphate transporter 100.0 2.1E-36 4.5E-41 324.3 27.9 211 184-432 33-250 (267)
188 PRK10744 pstB phosphate transp 100.0 7.4E-37 1.6E-41 326.5 24.0 206 184-432 26-243 (260)
189 PRK15093 antimicrobial peptide 100.0 3.2E-37 7E-42 340.1 21.8 215 184-432 20-247 (330)
190 COG0444 DppD ABC-type dipeptid 100.0 7.5E-37 1.6E-41 325.1 23.6 232 183-457 17-259 (316)
191 PRK14245 phosphate ABC transpo 100.0 4.2E-37 9E-42 326.4 21.5 210 184-432 16-233 (250)
192 PRK14241 phosphate transporter 100.0 4.5E-37 9.7E-42 327.7 21.6 208 184-432 17-241 (258)
193 PRK14235 phosphate transporter 100.0 6.9E-37 1.5E-41 328.0 23.0 212 184-432 32-250 (267)
194 PRK14269 phosphate ABC transpo 100.0 8E-37 1.7E-41 323.5 23.1 212 184-432 15-229 (246)
195 TIGR01192 chvA glucan exporter 100.0 2E-36 4.2E-41 358.1 28.4 208 184-433 348-558 (585)
196 cd03297 ABC_ModC_molybdenum_tr 100.0 7.6E-37 1.6E-41 316.9 21.6 192 189-426 16-214 (214)
197 cd03252 ABCC_Hemolysin The ABC 100.0 8E-37 1.7E-41 321.5 22.1 205 184-432 15-224 (237)
198 PRK14274 phosphate ABC transpo 100.0 8.7E-37 1.9E-41 325.7 22.5 211 184-432 25-242 (259)
199 PRK14259 phosphate ABC transpo 100.0 1.3E-36 2.9E-41 326.2 23.8 205 184-432 26-252 (269)
200 PRK14240 phosphate transporter 100.0 1.1E-36 2.5E-41 323.0 22.4 207 184-432 16-233 (250)
201 PRK14248 phosphate ABC transpo 100.0 3.1E-36 6.7E-41 323.1 25.9 207 184-432 34-251 (268)
202 TIGR02204 MsbA_rel ABC transpo 100.0 2.1E-36 4.5E-41 357.6 26.9 207 184-432 353-562 (576)
203 PRK14257 phosphate ABC transpo 100.0 1.3E-36 2.8E-41 334.7 23.1 211 184-432 95-312 (329)
204 PRK13547 hmuV hemin importer A 100.0 6.7E-37 1.4E-41 328.9 20.0 212 184-431 14-242 (272)
205 PRK10419 nikE nickel transport 100.0 7.3E-37 1.6E-41 328.1 20.3 206 184-432 25-240 (268)
206 PRK14272 phosphate ABC transpo 100.0 1.3E-36 2.9E-41 322.7 22.0 208 184-432 17-235 (252)
207 COG4525 TauB ABC-type taurine 100.0 8.5E-37 1.8E-41 300.4 18.6 201 184-429 18-220 (259)
208 PRK14255 phosphate ABC transpo 100.0 5.7E-36 1.2E-40 318.0 26.5 207 184-432 18-235 (252)
209 COG1123 ATPase components of v 100.0 2E-36 4.4E-41 342.8 24.1 213 184-433 22-244 (539)
210 PRK14244 phosphate ABC transpo 100.0 2E-36 4.3E-41 321.4 22.5 212 184-432 18-236 (251)
211 PRK14262 phosphate ABC transpo 100.0 1.6E-36 3.4E-41 321.9 21.7 211 184-432 16-233 (250)
212 PRK14275 phosphate ABC transpo 100.0 5.9E-37 1.3E-41 331.7 18.6 207 184-432 52-269 (286)
213 PRK14251 phosphate ABC transpo 100.0 1.6E-36 3.4E-41 322.1 21.4 207 184-432 17-234 (251)
214 COG4152 ABC-type uncharacteriz 100.0 4.4E-37 9.6E-42 311.9 16.3 211 180-435 11-221 (300)
215 PRK14236 phosphate transporter 100.0 6.6E-36 1.4E-40 321.3 26.3 210 184-431 38-254 (272)
216 PRK14253 phosphate ABC transpo 100.0 2.5E-36 5.4E-41 320.2 22.7 210 184-431 16-231 (249)
217 PRK10762 D-ribose transporter 100.0 8.6E-37 1.9E-41 355.1 20.7 208 184-431 17-228 (501)
218 PRK14265 phosphate ABC transpo 100.0 4.9E-36 1.1E-40 322.7 25.0 205 184-432 33-257 (274)
219 TIGR02323 CP_lyasePhnK phospho 100.0 2E-36 4.3E-41 321.7 21.7 207 184-432 16-237 (253)
220 PRK13549 xylose transporter AT 100.0 9.1E-37 2E-41 355.3 20.8 209 184-431 18-230 (506)
221 PRK14249 phosphate ABC transpo 100.0 2.8E-36 6E-41 320.3 22.5 211 184-432 17-234 (251)
222 PRK10261 glutathione transport 100.0 1.8E-36 4E-41 360.3 23.6 221 170-432 313-552 (623)
223 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-36 2.6E-41 354.5 21.5 201 184-432 24-228 (510)
224 cd03251 ABCC_MsbA MsbA is an e 100.0 2.7E-36 5.8E-41 316.7 21.9 205 185-433 16-225 (234)
225 PRK14246 phosphate ABC transpo 100.0 4.2E-36 9.1E-41 320.3 23.6 222 169-432 9-240 (257)
226 PRK14258 phosphate ABC transpo 100.0 3.3E-36 7.3E-41 321.7 22.6 213 184-432 20-244 (261)
227 COG4181 Predicted ABC-type tra 100.0 1.6E-36 3.4E-41 292.9 17.8 200 181-424 20-226 (228)
228 TIGR02982 heterocyst_DevA ABC 100.0 2.7E-36 5.8E-41 314.2 21.0 196 184-422 18-219 (220)
229 cd03245 ABCC_bacteriocin_expor 100.0 1.3E-36 2.8E-41 316.2 18.6 195 184-426 17-220 (220)
230 TIGR03608 L_ocin_972_ABC putat 100.0 2.3E-36 5E-41 311.0 20.3 189 184-417 11-206 (206)
231 TIGR02868 CydC thiol reductant 100.0 2.3E-36 4.9E-41 353.8 22.9 230 97-403 297-529 (529)
232 PRK14263 phosphate ABC transpo 100.0 3.5E-36 7.6E-41 321.6 22.2 211 182-432 19-244 (261)
233 cd03213 ABCG_EPDR ABCG transpo 100.0 2.4E-36 5.3E-41 308.8 20.0 171 184-426 22-194 (194)
234 PRK14271 phosphate ABC transpo 100.0 4.5E-36 9.8E-41 323.2 23.1 225 184-454 34-264 (276)
235 cd03254 ABCC_Glucan_exporter_l 100.0 3.2E-36 6.9E-41 315.2 21.3 205 184-432 16-225 (229)
236 PRK14260 phosphate ABC transpo 100.0 3.6E-36 7.8E-41 321.0 22.1 207 184-432 20-242 (259)
237 PRK09700 D-allose transporter 100.0 1.5E-36 3.2E-41 353.8 20.6 211 184-431 18-232 (510)
238 PRK03695 vitamin B12-transport 100.0 4.4E-36 9.5E-41 318.5 22.3 200 186-431 11-220 (248)
239 PRK14261 phosphate ABC transpo 100.0 5.1E-36 1.1E-40 318.6 22.7 211 184-432 19-236 (253)
240 PRK10247 putative ABC transpor 100.0 2.4E-36 5.3E-41 315.7 19.7 199 184-429 20-223 (225)
241 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.1E-36 8.9E-41 316.3 21.4 206 184-433 16-226 (238)
242 PLN03130 ABC transporter C fam 100.0 6.3E-36 1.4E-40 384.6 27.3 257 98-433 1200-1461(1622)
243 PRK15056 manganese/iron transp 100.0 3E-36 6.4E-41 324.0 20.2 206 184-431 20-228 (272)
244 PLN03232 ABC transporter C fam 100.0 6E-36 1.3E-40 384.3 26.6 258 98-433 1197-1458(1495)
245 PRK14238 phosphate transporter 100.0 4.5E-36 9.7E-41 322.4 21.2 206 184-431 37-253 (271)
246 PRK15134 microcin C ABC transp 100.0 4.7E-36 1E-40 351.1 22.8 221 170-432 275-514 (529)
247 COG4148 ModC ABC-type molybdat 100.0 1.1E-36 2.3E-41 314.1 14.4 196 189-433 16-218 (352)
248 cd03232 ABC_PDR_domain2 The pl 100.0 5.5E-36 1.2E-40 305.7 19.5 170 184-426 20-192 (192)
249 PRK14266 phosphate ABC transpo 100.0 2.5E-35 5.5E-40 312.6 25.3 211 184-432 16-233 (250)
250 PRK14243 phosphate transporter 100.0 6.4E-36 1.4E-40 320.0 20.9 205 184-432 23-247 (264)
251 COG1123 ATPase components of v 100.0 5.1E-36 1.1E-40 339.5 21.0 209 183-432 303-518 (539)
252 PRK14254 phosphate ABC transpo 100.0 8E-36 1.7E-40 322.7 21.7 204 184-431 52-267 (285)
253 cd03253 ABCC_ATM1_transporter 100.0 1E-35 2.3E-40 312.7 21.8 205 184-432 14-223 (236)
254 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.2E-35 2.5E-40 319.3 21.9 199 184-433 17-225 (275)
255 CHL00131 ycf16 sulfate ABC tra 100.0 1.6E-35 3.5E-40 314.4 22.8 212 184-431 20-239 (252)
256 TIGR01257 rim_protein retinal- 100.0 3.9E-36 8.5E-41 383.6 21.4 222 171-436 1938-2162(2272)
257 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.1E-35 2.3E-40 310.8 21.0 194 180-426 31-224 (224)
258 PRK15134 microcin C ABC transp 100.0 9E-36 2E-40 348.7 21.8 209 184-432 22-245 (529)
259 PRK13546 teichoic acids export 100.0 8.3E-35 1.8E-39 311.3 27.3 198 182-433 35-232 (264)
260 PRK13543 cytochrome c biogenes 100.0 1.4E-35 3E-40 307.7 20.6 189 184-419 24-212 (214)
261 PRK10982 galactose/methyl gala 100.0 1.7E-35 3.6E-40 343.5 23.2 207 183-431 10-221 (491)
262 PRK10261 glutathione transport 100.0 7.9E-36 1.7E-40 354.9 20.5 206 184-432 29-257 (623)
263 TIGR03269 met_CoM_red_A2 methy 100.0 1.6E-35 3.5E-40 346.0 22.5 219 170-432 279-516 (520)
264 PRK09580 sufC cysteine desulfu 100.0 3.8E-35 8.3E-40 310.7 23.3 220 184-440 14-241 (248)
265 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-35 3.3E-40 346.1 22.3 208 184-434 13-259 (520)
266 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-35 2.7E-40 345.4 21.3 209 184-430 14-227 (500)
267 TIGR00957 MRP_assoc_pro multi 100.0 2.9E-35 6.2E-40 378.5 26.2 259 97-433 1246-1508(1522)
268 PRK09544 znuC high-affinity zi 100.0 2.2E-35 4.7E-40 313.7 20.8 190 184-432 17-208 (251)
269 PRK14252 phosphate ABC transpo 100.0 8.2E-35 1.8E-39 311.6 25.2 207 184-432 29-248 (265)
270 PRK13538 cytochrome c biogenes 100.0 1.9E-35 4E-40 304.5 19.3 187 184-417 14-202 (204)
271 TIGR02857 CydD thiol reductant 100.0 3.7E-35 8E-40 343.6 24.0 192 184-417 335-529 (529)
272 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.9E-35 6.2E-40 302.3 20.2 180 184-439 13-199 (200)
273 COG5265 ATM1 ABC-type transpor 100.0 7.5E-36 1.6E-40 322.5 16.4 209 183-433 275-486 (497)
274 TIGR01166 cbiO cobalt transpor 100.0 2.3E-35 4.9E-40 300.3 19.0 179 183-404 4-188 (190)
275 TIGR01187 potA spermidine/putr 100.0 2.5E-35 5.5E-40 324.4 20.9 188 202-432 1-189 (325)
276 PRK11288 araG L-arabinose tran 100.0 2.6E-35 5.7E-40 342.6 21.4 203 184-427 17-223 (501)
277 cd03231 ABC_CcmA_heme_exporter 100.0 3.7E-35 8E-40 301.7 20.0 184 184-417 13-198 (201)
278 PRK13545 tagH teichoic acids e 100.0 6.3E-35 1.4E-39 331.9 23.8 227 137-433 4-232 (549)
279 COG4598 HisP ABC-type histidin 100.0 1.2E-35 2.6E-40 288.6 15.2 223 179-453 14-253 (256)
280 cd03230 ABC_DR_subfamily_A Thi 100.0 2.7E-35 5.8E-40 295.6 18.2 159 184-422 13-173 (173)
281 cd03215 ABC_Carb_Monos_II This 100.0 2.4E-35 5.2E-40 298.4 18.0 161 186-422 15-182 (182)
282 PRK13549 xylose transporter AT 100.0 2.7E-35 5.8E-40 342.9 20.9 221 170-431 259-492 (506)
283 cd03244 ABCC_MRP_domain2 Domai 100.0 2.4E-35 5.2E-40 306.9 18.1 199 184-427 17-220 (221)
284 PRK09700 D-allose transporter 100.0 3.1E-35 6.7E-40 342.8 21.1 221 170-428 265-493 (510)
285 PTZ00243 ABC transporter; Prov 100.0 8.3E-35 1.8E-39 373.7 26.5 207 184-433 1323-1533(1560)
286 COG4604 CeuD ABC-type enteroch 100.0 4.4E-36 9.4E-41 296.0 10.9 212 181-433 11-225 (252)
287 TIGR01189 ccmA heme ABC export 100.0 5.9E-35 1.3E-39 299.2 19.6 183 184-416 13-197 (198)
288 PTZ00265 multidrug resistance 100.0 1.1E-34 2.4E-39 369.9 26.6 270 98-420 349-655 (1466)
289 cd03288 ABCC_SUR2 The SUR doma 100.0 4.7E-35 1E-39 312.2 19.4 205 184-433 34-243 (257)
290 PRK13539 cytochrome c biogenes 100.0 4.6E-35 1E-39 302.3 18.6 186 184-419 15-200 (207)
291 PRK14264 phosphate ABC transpo 100.0 7.6E-35 1.7E-39 318.0 21.1 223 184-432 58-288 (305)
292 cd03229 ABC_Class3 This class 100.0 4.4E-35 9.6E-40 295.4 17.7 161 184-421 13-178 (178)
293 TIGR02324 CP_lyasePhnL phospho 100.0 6.4E-35 1.4E-39 304.4 19.5 191 184-418 21-223 (224)
294 TIGR03771 anch_rpt_ABC anchore 100.0 6.6E-35 1.4E-39 304.6 19.5 197 192-432 1-200 (223)
295 PRK15177 Vi polysaccharide exp 100.0 1.9E-34 4.1E-39 299.2 21.2 195 185-437 1-196 (213)
296 PRK10938 putative molybdenum t 100.0 5.4E-35 1.2E-39 339.1 18.9 197 184-432 16-223 (490)
297 cd03248 ABCC_TAP TAP, the Tran 100.0 3E-35 6.5E-40 307.4 15.1 195 184-422 27-226 (226)
298 COG4161 ArtP ABC-type arginine 100.0 9.1E-35 2E-39 277.9 16.7 205 182-430 13-227 (242)
299 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.3E-33 2.8E-38 304.6 27.6 195 185-432 51-246 (282)
300 TIGR02633 xylG D-xylose ABC tr 100.0 7.7E-35 1.7E-39 338.7 18.9 221 170-429 257-488 (500)
301 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.6E-34 3.4E-39 298.1 19.1 184 184-428 21-207 (207)
302 PRK10762 D-ribose transporter 100.0 1.9E-34 4.2E-39 335.4 22.0 209 185-431 266-482 (501)
303 PRK11288 araG L-arabinose tran 100.0 1.4E-34 3E-39 336.6 19.9 209 185-431 267-483 (501)
304 cd03246 ABCC_Protease_Secretio 100.0 1.6E-34 3.4E-39 290.1 17.4 156 184-422 15-173 (173)
305 COG1129 MglA ABC-type sugar tr 100.0 2E-34 4.2E-39 324.7 19.8 216 171-428 9-229 (500)
306 cd03290 ABCC_SUR1_N The SUR do 100.0 4.8E-34 1E-38 296.8 20.4 194 179-421 9-218 (218)
307 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-33 2.5E-38 299.6 23.5 183 185-423 8-195 (246)
308 PRK10522 multidrug transporter 100.0 1E-33 2.3E-38 332.6 25.3 190 184-425 336-530 (547)
309 PRK13540 cytochrome c biogenes 100.0 2.7E-34 5.9E-39 294.9 17.8 182 184-415 14-197 (200)
310 cd03247 ABCC_cytochrome_bd The 100.0 2.1E-34 4.5E-39 290.4 16.2 161 185-426 16-178 (178)
311 cd03250 ABCC_MRP_domain1 Domai 100.0 4.7E-34 1E-38 293.9 18.5 185 185-421 19-204 (204)
312 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-34 5.3E-39 290.5 15.9 166 184-426 12-180 (180)
313 TIGR01271 CFTR_protein cystic 100.0 1.5E-33 3.3E-38 361.7 26.9 206 184-433 1232-1440(1490)
314 PRK15439 autoinducer 2 ABC tra 100.0 6.9E-34 1.5E-38 331.3 20.7 205 186-431 278-490 (510)
315 COG4619 ABC-type uncharacteriz 100.0 3.2E-34 6.9E-39 276.2 13.3 195 182-422 14-212 (223)
316 cd03228 ABCC_MRP_Like The MRP 100.0 2E-33 4.2E-38 281.6 17.0 153 185-421 16-171 (171)
317 COG4172 ABC-type uncharacteriz 100.0 6.2E-33 1.3E-37 298.0 21.6 209 183-432 299-515 (534)
318 PRK13541 cytochrome c biogenes 100.0 3E-33 6.4E-38 286.1 18.2 178 185-414 15-192 (195)
319 cd03223 ABCD_peroxisomal_ALDP 100.0 4.6E-33 1E-37 277.8 19.1 150 184-420 14-163 (166)
320 PRK11819 putative ABC transpor 100.0 7.2E-33 1.6E-37 325.9 23.8 220 184-432 20-249 (556)
321 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.5E-33 1.8E-37 325.3 23.9 192 184-425 355-551 (555)
322 PRK10535 macrolide transporter 100.0 4.9E-33 1.1E-37 332.2 21.8 204 184-432 21-231 (648)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.7E-32 3.6E-37 322.6 25.4 221 184-433 18-248 (552)
324 PRK10982 galactose/methyl gala 100.0 5.7E-33 1.2E-37 322.3 20.5 217 171-429 251-476 (491)
325 PRK15064 ABC transporter ATP-b 100.0 8.6E-33 1.9E-37 323.7 21.8 220 184-433 14-242 (530)
326 cd03216 ABC_Carb_Monos_I This 100.0 8.3E-33 1.8E-37 275.1 18.1 146 184-424 13-162 (163)
327 PLN03232 ABC transporter C fam 100.0 2.3E-32 5E-37 351.3 27.0 247 97-433 581-828 (1495)
328 PRK15064 ABC transporter ATP-b 100.0 8.4E-33 1.8E-37 323.7 20.8 201 171-432 320-524 (530)
329 COG4586 ABC-type uncharacteriz 100.0 2.7E-33 5.8E-38 288.6 14.3 216 178-436 31-249 (325)
330 COG0396 sufC Cysteine desulfur 100.0 2.4E-32 5.2E-37 276.5 19.8 220 184-443 17-243 (251)
331 PLN03130 ABC transporter C fam 100.0 4.7E-32 1E-36 348.9 27.4 197 184-433 630-828 (1622)
332 COG3845 ABC-type uncharacteriz 100.0 1.6E-32 3.4E-37 303.5 19.1 212 174-427 8-223 (501)
333 PRK10938 putative molybdenum t 100.0 1.4E-32 3E-37 319.0 18.5 218 170-426 260-485 (490)
334 PRK13409 putative ATPase RIL; 100.0 1.6E-32 3.4E-37 323.3 19.0 197 171-428 341-537 (590)
335 COG4674 Uncharacterized ABC-ty 100.0 1.6E-32 3.4E-37 270.4 13.8 213 183-432 17-234 (249)
336 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.7E-32 8E-37 289.4 17.7 191 184-426 14-220 (255)
337 COG1119 ModF ABC-type molybden 100.0 2.9E-32 6.3E-37 279.0 15.9 209 182-427 42-256 (257)
338 PRK11819 putative ABC transpor 100.0 7E-32 1.5E-36 317.5 21.2 202 171-430 325-530 (556)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-31 2.4E-36 315.7 21.2 202 171-430 323-528 (552)
340 COG1101 PhnK ABC-type uncharac 100.0 6.6E-32 1.4E-36 270.0 15.8 208 182-426 17-231 (263)
341 COG4608 AppF ABC-type oligopep 100.0 1.3E-31 2.9E-36 279.6 17.5 172 184-432 26-198 (268)
342 TIGR00954 3a01203 Peroxysomal 100.0 1.1E-30 2.4E-35 312.4 24.5 183 184-419 465-653 (659)
343 PRK10636 putative ABC transpor 100.0 3.7E-31 8E-36 315.4 20.4 202 170-433 312-517 (638)
344 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-30 2.5E-35 336.2 26.1 198 184-433 651-850 (1522)
345 COG4172 ABC-type uncharacteriz 100.0 1.1E-30 2.3E-35 280.8 20.5 215 182-432 21-246 (534)
346 KOG0059 Lipid exporter ABCA1 a 100.0 2.5E-31 5.5E-36 326.2 17.1 208 186-437 580-791 (885)
347 PRK11147 ABC transporter ATPas 100.0 8.2E-31 1.8E-35 312.8 20.7 204 170-431 319-526 (635)
348 COG1134 TagH ABC-type polysacc 100.0 7.1E-30 1.5E-34 261.9 23.2 206 180-438 36-241 (249)
349 PLN03073 ABC transporter F fam 100.0 2.2E-30 4.7E-35 310.5 21.9 204 171-433 509-714 (718)
350 COG4167 SapF ABC-type antimicr 100.0 2.9E-30 6.4E-35 251.6 18.0 208 183-432 25-238 (267)
351 PRK10636 putative ABC transpor 100.0 7E-30 1.5E-34 304.4 24.7 216 183-431 13-234 (638)
352 cd03238 ABC_UvrA The excision 100.0 4.4E-30 9.5E-35 258.3 19.4 157 183-422 7-166 (176)
353 COG4133 CcmA ABC-type transpor 100.0 1.8E-30 3.9E-35 255.4 15.4 179 182-406 13-193 (209)
354 TIGR01271 CFTR_protein cystic 100.0 5.2E-30 1.1E-34 329.2 23.8 196 184-432 439-635 (1490)
355 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-30 5.6E-35 252.1 16.1 132 184-421 13-144 (144)
356 cd03222 ABC_RNaseL_inhibitor T 100.0 3.9E-30 8.4E-35 258.9 17.3 147 183-430 12-160 (177)
357 PRK11147 ABC transporter ATPas 100.0 1.3E-29 2.7E-34 302.6 24.2 221 184-432 16-242 (635)
358 COG4136 ABC-type uncharacteriz 100.0 2.2E-30 4.7E-35 245.4 11.6 181 183-403 14-195 (213)
359 PRK13409 putative ATPase RIL; 100.0 5E-30 1.1E-34 302.1 17.6 187 179-420 82-287 (590)
360 KOG0054 Multidrug resistance-a 100.0 3.5E-29 7.6E-34 308.4 24.0 246 98-432 484-730 (1381)
361 KOG0054 Multidrug resistance-a 100.0 1.9E-29 4.1E-34 310.8 21.1 259 97-433 1100-1362(1381)
362 COG4107 PhnK ABC-type phosphon 100.0 1.8E-29 3.8E-34 244.4 13.3 220 172-433 8-241 (258)
363 PTZ00243 ABC transporter; Prov 100.0 1.4E-28 3E-33 316.5 23.5 197 183-432 672-869 (1560)
364 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.1E-28 2.3E-33 243.6 16.9 143 184-421 12-157 (157)
365 COG0488 Uup ATPase components 100.0 5.7E-28 1.2E-32 278.7 22.2 220 182-431 14-238 (530)
366 PF00005 ABC_tran: ABC transpo 100.0 1.2E-28 2.7E-33 236.8 11.0 134 187-371 1-137 (137)
367 PLN03073 ABC transporter F fam 100.0 4.6E-28 9.9E-33 290.5 15.4 232 172-431 179-429 (718)
368 cd03270 ABC_UvrA_I The excisio 99.9 7.5E-27 1.6E-31 244.5 20.4 191 183-426 7-226 (226)
369 cd03271 ABC_UvrA_II The excisi 99.9 3.5E-26 7.7E-31 243.3 18.6 196 184-428 8-261 (261)
370 cd03278 ABC_SMC_barmotin Barmo 99.9 3.8E-26 8.2E-31 234.3 15.6 167 188-419 14-190 (197)
371 COG4778 PhnL ABC-type phosphon 99.9 7.7E-26 1.7E-30 218.6 10.9 194 183-419 23-227 (235)
372 COG0488 Uup ATPase components 99.9 5.1E-25 1.1E-29 254.2 19.7 201 170-432 321-524 (530)
373 COG1129 MglA ABC-type sugar tr 99.9 8.8E-25 1.9E-29 246.8 19.0 205 186-429 274-486 (500)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.5E-24 3.2E-29 229.1 16.2 186 183-418 14-234 (243)
375 COG4138 BtuD ABC-type cobalami 99.9 9.4E-26 2E-30 218.9 5.5 197 186-432 14-220 (248)
376 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.8E-25 8.2E-30 229.4 6.0 186 182-419 15-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.8E-24 1.7E-28 225.1 12.2 178 197-418 25-242 (251)
378 cd03240 ABC_Rad50 The catalyti 99.9 2.6E-23 5.6E-28 214.5 14.1 167 189-419 15-197 (204)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 7.5E-23 1.6E-27 212.4 15.8 179 188-421 18-210 (213)
380 PRK00349 uvrA excinuclease ABC 99.9 9E-22 1.9E-26 240.1 22.1 106 319-432 811-926 (943)
381 COG4178 ABC-type uncharacteriz 99.9 6E-22 1.3E-26 227.9 18.5 181 184-418 406-587 (604)
382 PRK00635 excinuclease ABC subu 99.9 3.3E-21 7.1E-26 244.1 24.7 104 321-432 792-905 (1809)
383 COG3845 ABC-type uncharacteriz 99.9 9E-22 2E-26 218.4 16.0 224 170-430 257-489 (501)
384 COG4615 PvdE ABC-type sideroph 99.9 1E-22 2.2E-27 218.8 7.4 191 186-427 338-531 (546)
385 KOG0927 Predicted transporter 99.9 7.4E-21 1.6E-25 211.9 18.6 214 183-432 87-308 (614)
386 TIGR00630 uvra excinuclease AB 99.9 2.9E-20 6.2E-25 226.6 22.7 106 318-431 808-923 (924)
387 COG1245 Predicted ATPase, RNas 99.8 2.3E-20 5.1E-25 204.0 15.6 171 190-418 360-530 (591)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3.3E-20 7.3E-25 190.5 14.3 171 187-421 12-192 (198)
389 KOG0927 Predicted transporter 99.8 8.8E-21 1.9E-25 211.4 9.9 199 172-429 391-592 (614)
390 PF01061 ABC2_membrane: ABC-2 99.8 9.7E-22 2.1E-26 200.3 2.0 208 522-735 1-210 (210)
391 COG4170 SapD ABC-type antimicr 99.8 1.7E-20 3.7E-25 187.0 10.5 219 183-433 19-248 (330)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.8 4.3E-20 9.4E-25 196.0 12.5 76 341-419 154-233 (247)
393 KOG2355 Predicted ABC-type tra 99.8 4.1E-19 8.9E-24 176.9 15.1 205 178-434 21-238 (291)
394 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.9E-19 4.2E-24 185.0 10.4 81 342-426 91-172 (200)
395 KOG0060 Long-chain acyl-CoA tr 99.8 2.3E-18 5.1E-23 193.4 18.7 195 183-419 447-641 (659)
396 KOG0066 eIF2-interacting prote 99.8 2.8E-18 6.2E-23 185.8 13.1 190 170-420 586-777 (807)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.8 6.7E-18 1.4E-22 175.4 14.7 81 340-421 124-211 (213)
398 KOG0062 ATPase component of AB 99.7 2.3E-18 5E-23 191.2 8.7 190 183-431 92-283 (582)
399 KOG0062 ATPase component of AB 99.7 2.5E-17 5.4E-22 183.1 12.2 193 174-424 366-559 (582)
400 COG2401 ABC-type ATPase fused 99.7 1.4E-16 3.1E-21 172.6 15.8 188 181-423 393-588 (593)
401 cd03239 ABC_SMC_head The struc 99.7 1.9E-16 4.1E-21 160.0 15.8 74 343-419 95-172 (178)
402 COG1245 Predicted ATPase, RNas 99.7 6.9E-17 1.5E-21 177.0 11.7 95 317-419 193-288 (591)
403 KOG0064 Peroxisomal long-chain 99.7 7.1E-17 1.5E-21 179.1 10.6 172 184-404 495-670 (728)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.7 6E-17 1.3E-21 169.3 7.7 154 183-427 16-175 (222)
405 cd03241 ABC_RecN RecN ATPase i 99.7 8.8E-16 1.9E-20 165.7 15.5 76 342-421 170-249 (276)
406 COG0178 UvrA Excinuclease ATPa 99.7 4.3E-15 9.4E-20 172.7 21.8 119 321-455 805-932 (935)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 3.3E-16 7.2E-21 155.8 10.6 74 343-419 78-155 (162)
408 cd03283 ABC_MutS-like MutS-lik 99.7 3E-16 6.4E-21 161.4 10.5 147 184-417 14-163 (199)
409 PRK00635 excinuclease ABC subu 99.6 4.4E-15 9.6E-20 189.1 22.1 107 320-433 1681-1796(1809)
410 cd03243 ABC_MutS_homologs The 99.6 1.8E-15 3.8E-20 155.9 9.4 84 343-430 92-176 (202)
411 PRK00349 uvrA excinuclease ABC 99.6 7.9E-15 1.7E-19 179.7 16.5 104 321-432 472-584 (943)
412 TIGR00630 uvra excinuclease AB 99.6 1.2E-14 2.5E-19 178.0 16.8 104 321-432 470-582 (924)
413 cd03242 ABC_RecF RecF is a rec 99.6 4.1E-14 8.8E-19 152.4 16.4 77 340-422 181-269 (270)
414 KOG0066 eIF2-interacting prote 99.6 1.3E-14 2.8E-19 157.7 10.5 214 183-429 276-495 (807)
415 PF08370 PDR_assoc: Plant PDR 99.5 3.4E-14 7.4E-19 118.0 6.6 57 751-807 9-65 (65)
416 cd03282 ABC_MSH4_euk MutS4 hom 99.5 3.6E-14 7.8E-19 146.5 8.3 136 183-403 15-151 (204)
417 cd03284 ABC_MutS1 MutS1 homolo 99.5 6.4E-14 1.4E-18 146.0 10.0 156 184-431 18-179 (216)
418 KOG0063 RNAse L inhibitor, ABC 99.5 1.7E-13 3.7E-18 149.4 12.7 182 180-418 345-531 (592)
419 TIGR02858 spore_III_AA stage I 99.5 1E-13 2.2E-18 148.7 10.6 140 198-431 112-267 (270)
420 TIGR01247 drrB daunorubicin re 99.5 6.4E-12 1.4E-16 132.2 23.4 229 530-792 1-235 (236)
421 PRK00064 recF recombination pr 99.4 4.5E-11 9.8E-16 134.0 21.4 78 340-422 271-359 (361)
422 smart00534 MUTSac ATPase domai 99.3 1.3E-12 2.7E-17 133.0 7.3 80 342-424 61-141 (185)
423 cd00820 PEPCK_HprK Phosphoenol 99.3 1.7E-12 3.7E-17 119.6 5.4 74 184-269 2-78 (107)
424 TIGR03062 pip_yhgE_Cterm YhgE/ 99.3 1E-10 2.2E-15 120.8 17.3 148 615-795 58-205 (208)
425 TIGR00025 Mtu_efflux ABC trans 99.3 1E-09 2.2E-14 115.4 23.4 216 536-794 2-229 (232)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.2 4.5E-11 9.7E-16 124.4 12.6 58 346-403 94-154 (213)
427 TIGR01291 nodJ ABC-2 type tran 99.2 2.7E-09 5.8E-14 114.0 25.6 231 524-794 7-248 (253)
428 PF02463 SMC_N: RecF/RecN/SMC 99.2 1.8E-11 3.9E-16 127.4 7.9 73 342-418 136-212 (220)
429 TIGR01069 mutS2 MutS2 family p 99.2 4.6E-11 1E-15 145.0 10.1 62 341-404 384-446 (771)
430 TIGR03861 phenyl_ABC_PedC alco 99.2 1.6E-09 3.4E-14 115.5 20.5 207 521-731 1-218 (253)
431 PRK14079 recF recombination pr 99.2 4.4E-10 9.5E-15 125.5 16.3 77 342-427 263-348 (349)
432 PRK07721 fliI flagellum-specif 99.2 5.3E-10 1.2E-14 127.4 16.3 175 183-430 145-340 (438)
433 PTZ00132 GTP-binding nuclear p 99.1 1.3E-10 2.8E-15 120.5 9.5 45 346-390 156-205 (215)
434 cd03287 ABC_MSH3_euk MutS3 hom 99.1 4.5E-10 9.7E-15 117.5 12.7 46 184-232 18-64 (222)
435 KOG0063 RNAse L inhibitor, ABC 99.1 2.7E-10 5.9E-15 124.8 8.3 96 317-419 193-288 (592)
436 PRK15066 inner membrane transp 99.1 7.9E-08 1.7E-12 102.8 27.1 237 520-795 6-251 (257)
437 cd01128 rho_factor Transcripti 99.1 2.1E-10 4.6E-15 121.8 6.8 86 329-422 117-211 (249)
438 PRK08533 flagellar accessory p 99.1 1.3E-09 2.8E-14 114.8 12.6 75 343-418 96-184 (230)
439 TIGR00611 recf recF protein. A 99.0 3.2E-09 7E-14 119.1 15.4 59 341-403 274-341 (365)
440 cd01124 KaiC KaiC is a circadi 99.0 4E-09 8.8E-14 106.4 13.3 77 341-418 70-163 (187)
441 TIGR00634 recN DNA repair prot 99.0 7.8E-10 1.7E-14 131.0 9.3 77 341-421 439-519 (563)
442 cd03286 ABC_MSH6_euk MutS6 hom 99.0 1.4E-09 3E-14 113.5 9.3 134 184-403 17-153 (218)
443 PRK10869 recombination and rep 99.0 1.6E-09 3.5E-14 127.6 10.1 77 341-421 429-509 (553)
444 PRK00409 recombination and DNA 99.0 1.2E-09 2.7E-14 133.1 9.1 81 341-425 389-470 (782)
445 TIGR02788 VirB11 P-type DNA tr 99.0 2.6E-09 5.6E-14 117.3 10.5 144 187-432 134-280 (308)
446 PHA02562 46 endonuclease subun 98.9 1.9E-09 4.2E-14 127.7 9.2 78 340-422 466-555 (562)
447 PRK13695 putative NTPase; Prov 98.9 1.3E-09 2.9E-14 109.5 5.8 78 342-426 78-157 (174)
448 PRK06793 fliI flagellum-specif 98.9 5.8E-09 1.3E-13 118.3 10.6 157 183-428 143-306 (432)
449 TIGR00618 sbcc exonuclease Sbc 98.9 5.4E-09 1.2E-13 132.3 11.0 80 339-420 947-1036(1042)
450 PF13304 AAA_21: AAA domain; P 98.9 6.5E-09 1.4E-13 107.4 9.5 63 341-404 235-300 (303)
451 PRK13830 conjugal transfer pro 98.8 1.4E-07 3E-12 116.3 17.7 79 357-440 649-736 (818)
452 cd01120 RecA-like_NTPases RecA 98.8 6.7E-08 1.5E-12 94.2 11.8 63 343-406 68-140 (165)
453 COG0178 UvrA Excinuclease ATPa 98.7 1.5E-07 3.1E-12 111.0 16.2 105 322-433 465-577 (935)
454 cd01131 PilT Pilus retraction 98.7 5.3E-08 1.2E-12 100.2 10.5 57 352-418 66-122 (198)
455 PRK03918 chromosome segregatio 98.7 2.7E-08 5.8E-13 124.2 9.7 78 339-419 785-868 (880)
456 TIGR03238 dnd_assoc_3 dnd syst 98.7 1E-08 2.2E-13 116.2 5.1 52 184-240 19-71 (504)
457 COG0842 ABC-type multidrug tra 98.7 2.3E-06 4.9E-11 90.9 22.2 152 617-797 131-283 (286)
458 COG3910 Predicted ATPase [Gene 98.7 9.5E-08 2.1E-12 95.3 10.0 63 340-404 127-189 (233)
459 TIGR00606 rad50 rad50. This fa 98.7 7.7E-08 1.7E-12 124.4 11.5 77 332-411 1191-1277(1311)
460 PRK01156 chromosome segregatio 98.7 7.6E-08 1.6E-12 120.4 10.9 78 339-418 798-883 (895)
461 PRK06067 flagellar accessory p 98.6 4.1E-07 8.8E-12 95.9 14.2 76 343-419 101-187 (234)
462 PRK10246 exonuclease subunit S 98.6 6.4E-08 1.4E-12 122.3 9.2 80 338-419 945-1032(1047)
463 cd01130 VirB11-like_ATPase Typ 98.6 9.5E-08 2.1E-12 97.3 7.2 84 186-272 14-99 (186)
464 PRK06995 flhF flagellar biosyn 98.6 3.2E-07 6.9E-12 105.7 12.1 71 185-275 244-314 (484)
465 PRK07196 fliI flagellum-specif 98.6 6.2E-08 1.3E-12 110.1 5.5 91 182-273 141-240 (434)
466 TIGR01248 drrC daunorubicin re 98.5 5.1E-07 1.1E-11 89.1 10.5 115 615-731 30-146 (152)
467 TIGR02168 SMC_prok_B chromosom 98.5 1.3E-07 2.8E-12 121.0 7.7 76 339-418 1086-1165(1179)
468 TIGR02169 SMC_prok_A chromosom 98.5 2.6E-07 5.7E-12 118.4 8.2 76 340-419 1072-1151(1164)
469 cd01125 repA Hexameric Replica 98.4 1E-06 2.2E-11 93.3 11.0 46 357-403 108-159 (239)
470 smart00382 AAA ATPases associa 98.4 6.2E-06 1.3E-10 77.1 15.2 59 343-401 61-124 (148)
471 TIGR01420 pilT_fam pilus retra 98.3 3.9E-06 8.4E-11 93.8 12.7 42 194-237 119-160 (343)
472 PRK02224 chromosome segregatio 98.3 1.1E-06 2.5E-11 109.8 9.2 77 340-419 779-868 (880)
473 PRK13891 conjugal transfer pro 98.3 1.5E-05 3.3E-10 99.0 17.9 69 353-423 680-751 (852)
474 TIGR01026 fliI_yscN ATPase Fli 98.3 1.1E-05 2.3E-10 92.6 14.7 51 182-236 149-199 (440)
475 PRK06002 fliI flagellum-specif 98.3 7.5E-07 1.6E-11 101.4 5.2 73 179-255 148-230 (450)
476 TIGR02655 circ_KaiC circadian 98.3 4.3E-07 9.3E-12 105.9 3.2 80 323-418 101-190 (484)
477 cd02023 UMPK Uridine monophosp 98.2 2.4E-06 5.3E-11 87.6 5.9 23 199-221 1-23 (198)
478 TIGR03518 ABC_perm_GldF glidin 98.2 0.00015 3.3E-09 77.0 19.4 193 525-728 2-208 (240)
479 PRK09825 idnK D-gluconate kina 98.1 1.4E-06 3.1E-11 88.0 2.9 67 196-269 2-70 (176)
480 TIGR03881 KaiC_arch_4 KaiC dom 98.1 1.1E-05 2.4E-10 84.5 9.4 34 185-218 7-41 (229)
481 PRK05399 DNA mismatch repair p 98.0 2.1E-05 4.6E-10 97.5 10.2 69 341-413 665-738 (854)
482 PF13555 AAA_29: P-loop contai 98.0 8.3E-06 1.8E-10 67.9 4.3 37 187-223 12-49 (62)
483 PRK01889 GTPase RsgA; Reviewed 97.9 6.7E-06 1.5E-10 92.2 4.6 79 186-268 184-262 (356)
484 PRK08149 ATP synthase SpaL; Va 97.9 7.9E-06 1.7E-10 93.0 4.0 71 182-253 137-214 (428)
485 PF09818 ABC_ATPase: Predicted 97.9 0.00023 4.9E-09 80.3 15.1 94 326-422 308-416 (448)
486 TIGR00416 sms DNA repair prote 97.8 3E-05 6.6E-10 89.6 7.8 63 359-421 169-247 (454)
487 PRK13898 type IV secretion sys 97.8 0.00073 1.6E-08 83.9 20.3 47 356-403 638-685 (800)
488 COG1682 TagG ABC-type polysacc 97.8 0.0054 1.2E-07 66.0 24.2 204 519-733 15-222 (263)
489 TIGR00235 udk uridine kinase. 97.8 8.1E-06 1.7E-10 84.5 2.3 29 195-223 4-32 (207)
490 PF12679 ABC2_membrane_2: ABC- 97.8 0.0033 7.1E-08 67.3 22.0 162 603-793 88-272 (277)
491 PRK13764 ATPase; Provisional 97.8 0.00014 3E-09 86.2 12.2 64 357-428 321-400 (602)
492 cd01122 GP4d_helicase GP4d_hel 97.8 0.00053 1.2E-08 73.7 15.8 39 183-221 16-54 (271)
493 PRK10416 signal recognition pa 97.8 1.3E-05 2.8E-10 88.5 3.2 72 195-269 112-192 (318)
494 TIGR02680 conserved hypothetic 97.8 3.3E-05 7.1E-10 100.2 7.3 58 340-401 1245-1314(1353)
495 PRK10078 ribose 1,5-bisphospho 97.8 2.2E-05 4.8E-10 79.8 4.5 37 197-239 2-38 (186)
496 cd01121 Sms Sms (bacterial rad 97.7 8.4E-05 1.8E-09 83.8 9.0 62 359-420 157-234 (372)
497 COG0419 SbcC ATPase involved i 97.7 8.1E-05 1.7E-09 93.5 9.6 78 339-419 812-897 (908)
498 PF13558 SbcCD_C: Putative exo 97.7 5.8E-05 1.3E-09 67.9 6.1 48 340-387 30-90 (90)
499 PRK15176 Vi polysaccharide exp 97.7 0.005 1.1E-07 66.4 21.9 71 665-735 158-228 (264)
500 cd01136 ATPase_flagellum-secre 97.7 4.2E-05 9.1E-10 84.4 6.0 51 182-236 55-105 (326)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.5e-143 Score=1353.10 Aligned_cols=771 Identities=59% Similarity=1.023 Sum_probs=704.9
Q ss_pred ccccCCCccccCC-------Cc-cCchHhhHHHHHhhCCChhhhhhhcccccc-cCCcee---eEEeeccccchhhHHHH
Q 003389 36 EVWNAPDNVFSRS-------ER-QDDEEELRWAAIERLPTYDRLKKGMLNQVL-EDGKVV---KHEVDVSNLAVQDKKRL 103 (824)
Q Consensus 36 ~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~ 103 (824)
++|. .+++|++. +. |||||+|+|||+||||||+|+|++++.+.. ++|... ..++|+.+++.++++.+
T Consensus 19 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1470)
T PLN03140 19 SSRN-MEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKF 97 (1470)
T ss_pred hhhh-hhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHH
Confidence 4553 36777432 12 789999999999999999999999996421 111111 12499999999999999
Q ss_pred HHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccc
Q 003389 104 LESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRS 183 (824)
Q Consensus 104 ~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~ 183 (824)
++|+.++.++|+++++.+++++.+++|+++|+++|+|+||+|++++.++.+.+||++|.+.+.++.+....+...+++.+
T Consensus 98 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~ 177 (1470)
T PLN03140 98 IDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTK 177 (1470)
T ss_pred HHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999888776655543344456
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++||+||||.|+|||+++|+||||||||||||+|+|+++++.+++|+|+|||+++++..+++.++||+|+|.|++++||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 78999999999999999999999999999999999999887678999999999987766678899999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|||.|+++|++++.+.+++.+++++++++++.|+.+++.+|++...++.+.+..++++|+.+||++|+||.||++++++|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99999999988766555556677788888888888899999998888887778899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
||||||||+||++|+++|++|||||||+|||+.++.++++.|+++++..|+|+|+++|||.++++++||+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999999999988678999999999999999999999999999999
Q ss_pred EecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcCCCCC
Q 003389 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK 503 (824)
Q Consensus 424 ~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~ 503 (824)
|+||++++.+||+++||+||+++|||||++++++++++++||.+...|+++.++++|+++|++++.++++.++++.|.++
T Consensus 418 y~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 497 (1470)
T PLN03140 418 YQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDK 497 (1470)
T ss_pred EeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999998899988778888899999999999999999999988888777
Q ss_pred CCCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHH
Q 003389 504 SQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFS 583 (824)
Q Consensus 504 ~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~ 583 (824)
++.++..+..++|..++|+|+++|++|++++++||+.++++|++|.+++|+++|++||++++++.+..+++.+.|++||+
T Consensus 498 ~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~ 577 (1470)
T PLN03140 498 SQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFS 577 (1470)
T ss_pred hhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHH
Confidence 76677766678899999999999999999999999999999999999999999999999988766666788899999999
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHH
Q 003389 584 LLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFF 663 (824)
Q Consensus 584 ~~~~~f~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~ 663 (824)
+++++|++++++++++.+||||+|||+.+||++|+|++|+++++||+.++++++|++|+|||+||++++++||+|+++++
T Consensus 578 ~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~ 657 (1470)
T PLN03140 578 MIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVF 657 (1470)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCC
Q 003389 664 SIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQ 743 (824)
Q Consensus 664 l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~ 743 (824)
+++++++++|+++++++||+.+|+++++++++++++||||+||+++||+||+|++|+||++||++|+++|||.+++|.+.
T Consensus 658 l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~ 737 (1470)
T PLN03140 658 LIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNK 737 (1470)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred CCCCCCcccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCccccc
Q 003389 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEE 809 (824)
Q Consensus 744 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~~~~~~~~~~~ 809 (824)
.+++ .+.+.|+++|+++|+..++.|+|+++|+|+||+++|+++++++|+|+++..+++++++++
T Consensus 738 ~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~ 801 (1470)
T PLN03140 738 MASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801 (1470)
T ss_pred ccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccccc
Confidence 2221 246789999999999998899999999999999999999999999999877777765443
No 2
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-141 Score=1265.31 Aligned_cols=718 Identities=53% Similarity=0.923 Sum_probs=676.3
Q ss_pred cCchHhhHHHHHhhCCChhhhhhhcccccccCCceeeEEeeccccchhhHHHHHHHHHHHhccChHHHHHHHhhhccccC
Q 003389 51 QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130 (824)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~ 130 (824)
+||||+|||||+|||||++| +++.+.. +.++|+.+++..++..++++..+..++|+|+++.+++++.+++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~------~~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF------ESEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc------cCcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 46999999999999999999 6665321 2368999999999999999999999999999999999999988
Q ss_pred CCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcH
Q 003389 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (824)
Q Consensus 131 ~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGK 210 (824)
+.|.++++++++.+++++..| ||+.|...+..+..+...+.. ++...+||+|+||.++||||++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998766 999999999999888777665 4455789999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHH
Q 003389 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (824)
Q Consensus 211 STLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~ 290 (824)
||||++|+|.++......|+|+|||++.+++.+++.++|++|+|.|+|+|||+|+|+|+++|++++.|++ ++.|+|+
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999988777789999999999999889999999999999999999999999999999988765 5666665
Q ss_pred hcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCC
Q 003389 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (824)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPT 370 (824)
.+ ..+|++++++||++|+||+|||++.||+||||||||+||+++++++++++|||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 42 1578999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHH
Q 003389 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVAD 450 (824)
Q Consensus 371 sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad 450 (824)
+|||++|+.+|+++||+++|..+.|++++++||+++++++||+|++|++|++||+||++++++||+++||.||+++++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcCCCCCCCCCCCcccccccCCcHHHHHHHHHHH
Q 003389 451 FLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (824)
Q Consensus 451 fl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R 530 (824)
||+++++++++.|||..++.|+.+.+++||.+.|.+++.++++..+++.|+++++.|+.++..++|.+++|+|+++|+.|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHhh
Q 003389 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610 (824)
Q Consensus 531 ~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf~ker~ 610 (824)
+|++++||.+++++++++.+++|+|+|++|+++++ ++..++..|.|++||++++.+|++++|+++++++||||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999995 5566788999999999999999999999999999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHH
Q 003389 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (824)
Q Consensus 611 ~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~ 690 (824)
..|||||||.+|.+++++|++++++++|.+|+||++||.++|++||+|||+++++++|++++|++++++++|+.+|+++|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCC---------c---ccchhHHH
Q 003389 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI---------N---QPTIGKVL 758 (824)
Q Consensus 691 ~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~---------~---~~~~G~~~ 758 (824)
++.++++++++||+||+.+||+||+|++|+||++||+|+|++|||++++|+|.+.|+.+ | ..+.|.++
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999997433321 2 35689999
Q ss_pred HhhcCCc-----cCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCccccccchh
Q 003389 759 LKIRGFS-----TESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEK 813 (824)
Q Consensus 759 L~~~g~~-----~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~~~~~~~~~~~~~~~ 813 (824)
|+.+|+. +..+|+|+|+||++||+++|++++++++.|++|..++++++..+..++
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~ 746 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKE 746 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchh
Confidence 9998887 888999999999999999999999999999999999999987665544
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3e-107 Score=1031.50 Aligned_cols=654 Identities=29% Similarity=0.474 Sum_probs=548.5
Q ss_pred ChHHHHHHHhhhcccc--CCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCccccccccccee
Q 003389 114 DNEKFLKRIRHRTDRV--GIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVS 191 (824)
Q Consensus 114 ~~e~~~~~~~~~~~~~--~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs 191 (824)
|.+++++.++++.++. +++.++++|+|+||+|++ ...+...+||+.|.+.+......... ...+++++++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~iL~~vs 81 (1394)
T TIGR00956 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKL-KKFRDTKTFDILKPMD 81 (1394)
T ss_pred CHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHh-cccCCCCcceeeeCCE
Confidence 3444444333333333 444559999999999998 44566678999998877665333211 0123344577999999
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCCHHHHHHH
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLDF 268 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lTV~E~L~f 268 (824)
+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.|++.+||+|||.|
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f 161 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF 161 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHH
Confidence 999999999999999999999999999997421 125999999999875432 24569999999999999999999999
Q ss_pred hhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 003389 269 SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (824)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqr 348 (824)
+++++.+..+.. ...+.++ .+..++.+++.+||++++||+||++.+++||||||
T Consensus 162 ~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 215 (1394)
T TIGR00956 162 AARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215 (1394)
T ss_pred HHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCcccc
Confidence 987764321000 0001100 01134668999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 349 qRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
|||+||++|+.+|++|||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|++
T Consensus 216 kRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPA 295 (1394)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCH
Confidence 99999999999999999999999999999999999999999766899999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcCCCCCC----
Q 003389 429 DNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKS---- 504 (824)
Q Consensus 429 ~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~---- 504 (824)
+++.+||+++||+||++.|+|||+++++++++ ++++...+. ....+.++|+++|++|+.++++.++++.+.++.
T Consensus 296 ~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~-~~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 373 (1394)
T TIGR00956 296 DKAKQYFEKMGFKCPDRQTTADFLTSLTSPAE-RQIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESD 373 (1394)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHhccChhh-hhccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchh
Confidence 99999999999999999999999999998754 334322111 123578999999999998888777665432210
Q ss_pred -----------CCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccc
Q 003389 505 -----------QAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (824)
Q Consensus 505 -----------~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~ 573 (824)
+..+.....++|..|+|+|+++|++|++++++||+.+++.|+++.+++|+++|++||+++.+.. +.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~~ 450 (1394)
T TIGR00956 374 TKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---DF 450 (1394)
T ss_pred hHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---hH
Confidence 0011122345789999999999999999999999999999999999999999999999986543 45
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhH
Q 003389 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS 653 (824)
Q Consensus 574 ~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~ 653 (824)
+.+.|++||++++++|+++++++.++.+||||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||+++++
T Consensus 451 ~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~ 530 (1394)
T TIGR00956 451 YSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAG 530 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHH
Q 003389 654 RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVN 733 (824)
Q Consensus 654 ~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~N 733 (824)
+||+|+++++++++++.++|+++++++||+.+|+.+++++++++++|+||++|+++||+||+|++|+||++||++|+++|
T Consensus 531 ~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~n 610 (1394)
T TIGR00956 531 RFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVN 610 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccCC---CCCC---------CCc---------ccchhHHHHhh-cCCccCCcchhHHHHHHHHHHHHHHHHHHH
Q 003389 734 EFLGGRWDAQ---NKDP---------SIN---------QPTIGKVLLKI-RGFSTESNWYWIGVGALTGYSFLFNFLFIA 791 (824)
Q Consensus 734 Ef~~~~~~~~---~~~~---------~~~---------~~~~G~~~L~~-~g~~~~~~~~w~~~~~L~~~~v~f~~l~~l 791 (824)
||++..++|. +.++ ..| +.+.|+++|+. +|+. ..|+|+|+|+|++|+++|++++++
T Consensus 611 ef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~--~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 611 EFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY--NSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc--cchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999884 1111 112 24689999985 5554 568999999999999999999999
Q ss_pred HHHhcCCcCCC
Q 003389 792 ALAYLNPIGDS 802 (824)
Q Consensus 792 aL~~~~~~~~~ 802 (824)
+++|+++....
T Consensus 689 ~l~~~~~~~~~ 699 (1394)
T TIGR00956 689 LTEFNKGAKQK 699 (1394)
T ss_pred HHHhccccCCC
Confidence 99999865544
No 4
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.8e-100 Score=903.05 Aligned_cols=574 Identities=26% Similarity=0.465 Sum_probs=493.9
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
++++++|+|||++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998775456899999999876444467899999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc-
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM- 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~- 339 (824)
||+|||.|+++++.+.. +++.+ ....++++++.+||.+++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~-------~~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRR-------VTKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCC-------CCHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999987754311 01111 12246789999999999999999864
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.++|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 4899999999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcC
Q 003389 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (824)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (824)
|+++|+|+++++.+||+++||+||++.|||||++++++.....+ .. ...+.+++.+.|++++.+++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-----NE--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-----cc--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999987542211 00 112345677888887776665544332
Q ss_pred CCCCCC---CCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhh
Q 003389 500 PYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (824)
Q Consensus 500 ~~~~~~---~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~ 576 (824)
..+... .........+|..+++.|+++|++|+++..+||+.++..|+++.+++|+++|++|++++.+.. +.+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHH
Confidence 111100 001111234678899999999999999999999999999999999999999999999986543 45678
Q ss_pred HHHHHHHHHHHHHhhH-HHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHH
Q 003389 577 FGALFFSLLNIMFNGF-AENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655 (824)
Q Consensus 577 ~g~lFf~~~~~~f~~~-~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~F 655 (824)
.|++||++++++|.++ ..++.+..+|+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+|+++++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 9999999998888865 556777799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhh
Q 003389 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (824)
Q Consensus 656 f~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf 735 (824)
|.|+++++++++++.++++++++++||..+|+.+++++++++++|+||+++.++||+||+|++|+||++||++|+++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cCCCCCCCCcccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 736 LGGRW-DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 736 ~~~~~-~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
.+..+ .|...+....|...|+++|+.+|++.+ ++|.++++|++|+++|+++++++|++...
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~~~ 614 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIRIR 614 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99876 453222111245679999999999764 46999999999999999999999998543
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1e-98 Score=892.96 Aligned_cols=610 Identities=20% Similarity=0.334 Sum_probs=480.8
Q ss_pred CCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHH
Q 003389 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (824)
Q Consensus 133 ~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKST 212 (824)
.+.++++|.++++.+.......+... ....+...-...++.+.+ +++++|+|||++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45789999999988643210111100 011111101112222222 3567999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhc
Q 003389 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (824)
Q Consensus 213 LL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~ 292 (824)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.... .++.+
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~--- 177 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQE--- 177 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHH---
Confidence 999999998773 2589999999987542 24569999999999999999999999875542110 00000
Q ss_pred CCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCC
Q 003389 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (824)
Q Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsG 372 (824)
....++++++.+||++++||++|+...++|||||||||+||++|+.+|++|||||||+|
T Consensus 178 ---------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 178 ---------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ---------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 11246779999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 373 LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
||+.++.++++.|+++++ .|+|+|+++|||..+++++||++++|++|+++|+|+++++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999987 5899999999999889999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhcC---CCCCCC-----CCCC-cccccccCCcHHHH
Q 003389 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV---PYDKSQ-----AHPA-SLVKEKYGISKWEL 523 (824)
Q Consensus 453 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~---~~~~~~-----~~~~-~~~~~~~~~s~~~q 523 (824)
+++++...+.+.....+.+ ...+++.+.|++.. .+...+.... +.+..+ ..+. ......+..++|+|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9999864321100000111 11234455564321 1111111110 000000 0000 01112355789999
Q ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHH-hhHHHHHHHhhhh
Q 003389 524 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-NGFAENAMTVLRL 602 (824)
Q Consensus 524 ~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f-~~~~~~~~~~~~~ 602 (824)
+++|++|++++ +||+.+...|+++.+++|+++|++||+++ . .+.+++.|++||++++.++ +.++.++.++.+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~---~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--F---RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988 78888888999999999999999999985 2 3457789999999888665 4578888889999
Q ss_pred hHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCc
Q 003389 603 PIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRT 682 (824)
Q Consensus 603 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~ 682 (824)
+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||++++++||.|++++++++++++++|+++++++||
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCc-----ccCCCCCCCCcccchhHH
Q 003389 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR-----WDAQNKDPSINQPTIGKV 757 (824)
Q Consensus 683 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~-----~~~~~~~~~~~~~~~G~~ 757 (824)
+.+|+++++++++++++||||+++ +||+||+|++|+||++||++|+++|||.+.+ +.|..+. |....+..
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~---~~~~~~c~ 620 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH---GSDRASCK 620 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc---cCCCCCCc
Confidence 999999999999999999999997 7999999999999999999999999998654 2443221 11111122
Q ss_pred HHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 758 LLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 758 ~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
++...++.. ..+|.++++|++++++|+++++++|+++++
T Consensus 621 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 621 FVEEDVAGQ--ISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred cchhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 343333332 347999999999999999999999998763
No 6
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-99 Score=889.63 Aligned_cols=587 Identities=29% Similarity=0.505 Sum_probs=499.9
Q ss_pred CCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHH
Q 003389 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (824)
Q Consensus 133 ~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKST 212 (824)
...+++.|+++++..... .. ..+++|+||||+++|||++||||||||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346789999998875321 01 3578999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhc
Q 003389 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (824)
Q Consensus 213 LL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~ 292 (824)
||++|+|+...+...+|+|++||++.+....++.+|||.|+|.++|++||+|+|.|+|+++.+.. +++.+|
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k-- 142 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEK-- 142 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHH--
Confidence 99999999987667899999999887766678899999999999999999999999999875431 222222
Q ss_pred CCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCC
Q 003389 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (824)
Q Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsG 372 (824)
..+++++++.|||.+|+||++|+...||+||||||||+||..|+.+|++|||||||||
T Consensus 143 ----------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 143 ----------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ----------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 3468899999999999999999998899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 373 LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhhHHHhhcCCCCcCCChhHHHHHHh-hchhhHHHHhhhcCCCCCCCCCCCcccccccCCcHHHHHHHHHHHH
Q 003389 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFK-SFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFARE 531 (824)
Q Consensus 453 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~ 531 (824)
.++.+..++.+.-.+. .......+.++ .....+... ......... .+. ......++|.|+..+++|.
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~---~~~~~~s~~~q~~~L~~R~ 347 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLE-ALEKSLSTS--KKV---EIGTSPSWWTQFKILLKRS 347 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHH-HHhhhcccc--ccc---ccccCCcHHHHHHHHHHHH
Confidence 9998843111000000 00011111111 110111110 000000000 000 0111689999999999999
Q ss_pred HHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHH-HHHHHhhhhhHHHHHhh
Q 003389 532 WLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQRD 610 (824)
Q Consensus 532 ~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~-~~~~~~~~~~vf~ker~ 610 (824)
+++++||+.++..|.+|.+++|+++|++||+++.+...+ +++.|++||.+.++.|..+. .++.++.++++|.||+.
T Consensus 348 ~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~ 424 (613)
T KOG0061|consen 348 LKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETS 424 (613)
T ss_pred hHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999998665544 46899999999988777655 68899999999999999
Q ss_pred cCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHH
Q 003389 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (824)
Q Consensus 611 ~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~ 690 (824)
+++|+.++|++|+.+.++|+.++.+++|++|+|||+|++++..+|++|++++++..+++.+++.+++++.+|...|++++
T Consensus 425 ~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~ 504 (613)
T KOG0061|consen 425 SGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLG 504 (613)
T ss_pred cCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcCCccCCcc
Q 003389 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNW 770 (824)
Q Consensus 691 ~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~ 770 (824)
+++++++++||||+++.++||+||+|++|+|+++|++||+++|||.+....|...++ .++...|.++|+..++...+
T Consensus 505 ~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-- 581 (613)
T KOG0061|consen 505 PVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCCESTGEDVLKQLGFEDSS-- 581 (613)
T ss_pred HHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-CcccccHHHHHHhcCCcccc--
Confidence 999999999999999999999999999999999999999999999974334432221 26788999999999998755
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 771 YWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 771 ~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
+|.++.++++++++|+++++++|++..+
T Consensus 582 ~~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 582 FWLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6899999999999999999999998765
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.2e-97 Score=938.60 Aligned_cols=596 Identities=22% Similarity=0.400 Sum_probs=508.1
Q ss_pred CCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcH
Q 003389 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (824)
Q Consensus 131 ~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGK 210 (824)
++...+.+.|+|+++.++...+.+ +. ....+++++|+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~--------------------~~-~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMK--------------------EQ-GVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCcccc--------------------cc-ccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 345567899999999875431100 00 111234579999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHH
Q 003389 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (824)
Q Consensus 211 STLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~ 290 (824)
|||||+|+|+.++. ..+|+|.+||++.+....++.+|||+|+|.|++.+||+|||.|++.++.+.. .++.+
T Consensus 920 TTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~~~- 990 (1470)
T PLN03140 920 TTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSKEE- 990 (1470)
T ss_pred HHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCHHH-
Confidence 99999999997642 4689999999887543345779999999999999999999999876542210 00000
Q ss_pred hcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCC
Q 003389 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (824)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPT 370 (824)
....++++++.+||.+++|+.||+..+++|||||||||+||++|+.+|++|||||||
T Consensus 991 -----------------------~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 991 -----------------------KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred -----------------------HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 112467899999999999999998888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC-CeEEEecCh----hhHHHHHHHc-CC-CCC
Q 003389 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-GQIVYQGPR----DNVLEFFEHM-GF-KCP 443 (824)
Q Consensus 371 sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~p 443 (824)
+|||+.++..+++.|+++++ .|+|+|+++|||+.++++.||++++|++ |+++|+|+. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 99999999999999999987 4899999999999889999999999996 899999996 5899999997 66 499
Q ss_pred CCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHhhhc---CCCCCCCCCCCcccccccCCcH
Q 003389 444 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR---VPYDKSQAHPASLVKEKYGISK 520 (824)
Q Consensus 444 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~s~ 520 (824)
+..|||||++|+++..... ....++++.|++|+.+++..+++. .+.+. .+......+|..++
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~ 1191 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPG---ASDLYFATQYSQST 1191 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCC---ccccccCccccCCH
Confidence 9999999999998753211 112478999999988877654442 22111 11112245789999
Q ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHH-HHHHHh
Q 003389 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTV 599 (824)
Q Consensus 521 ~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~-~~~~~~ 599 (824)
|.|+++|++|+++.+|||+.++..|+++.+++|+++|++||+++.+.+++++.++++|++|+++++++++... .+|.+.
T Consensus 1192 ~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~ 1271 (1470)
T PLN03140 1192 WGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271 (1470)
T ss_pred HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987777778888899999999988886654 457777
Q ss_pred hhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 003389 600 LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAV 679 (824)
Q Consensus 600 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~ 679 (824)
.+|+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++|++++++
T Consensus 1272 ~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~ 1351 (1470)
T PLN03140 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSL 1351 (1470)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHH-
Q 003389 680 GRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVL- 758 (824)
Q Consensus 680 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~- 758 (824)
+||..+|+.+++++++++++||||++|+++||+||+|+||+||++|+++|+++|||.+....|.+++. .+...|.++
T Consensus 1352 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~--~~~~~~~~~~ 1429 (1470)
T PLN03140 1352 TPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGG--APDPTIKWYI 1429 (1470)
T ss_pred CCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCC--CCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777655541 112356666
Q ss_pred HhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003389 759 LKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPI 799 (824)
Q Consensus 759 L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~ 799 (824)
++.+|+.. .|.|++++++++|+++|.++++++++++|+.
T Consensus 1430 ~~~~g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1430 QDHYGYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHhcCcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 67889875 4689999999999999999999999999974
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3e-91 Score=885.45 Aligned_cols=564 Identities=25% Similarity=0.366 Sum_probs=477.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+|||+.|+|||+++|+||||||||||||+|+|+.++....+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 4579999999999999999999999999999999999987432347999999998853 346789999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+|||.|+++++.+.. .++.+ ....++++++.+||.+++|+.||+. ..+
T Consensus 854 ~E~L~~~a~l~~~~~-------~~~~~------------------------~~~~v~~~l~~l~L~~~~d~~v~~~-~~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKS-------VSKSE------------------------KMEYVEEVIKLLEMESYADAVVGVP-GEG 901 (1394)
T ss_pred HHHHHHHHHhCCCCC-------CCHHH------------------------HHHHHHHHHHHcCChhhCCCeeCCC-CCC
Confidence 999999887653210 00001 1124678999999999999999964 347
Q ss_pred CCHHHHHHHHHHHHHHcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC-
Q 003389 343 ISGGQKKRVTTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG- 420 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~-iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G- 420 (824)
|||||||||+||++|+.+|+ +|||||||+|||+.++..|++.|+++++ .|+|+|+++|||...+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999986 58999999999998788999999999997
Q ss_pred eEEEecCh----hhHHHHHHHcCC-CCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHHh
Q 003389 421 QIVYQGPR----DNVLEFFEHMGF-KCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS 495 (824)
Q Consensus 421 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 495 (824)
+++|+|+. +++.+||+++|+ +||++.|||||++|+++...... ...++.+.|+.|+..++..+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 578999999996 99999999999999987532110 12356778888777666554
Q ss_pred hhcC---CCCCCCCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCccc
Q 003389 496 DLRV---PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (824)
Q Consensus 496 ~l~~---~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~ 572 (824)
+++. +.............++|+.|+|.|++.|++|+++.+|||+.++..|+++.+++|+++|++||+++.+. ++
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---HH
Confidence 3322 11111110011123568999999999999999999999999999999999999999999999998654 45
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHHHHhhhhhHH-HHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCch
Q 003389 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIF-YKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPA 651 (824)
Q Consensus 573 ~~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf-~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~ 651 (824)
.++++|++|+.+++..+.....++.++.+|++| +|||.+++|++++|++|++++|+|+.++.+++|.+|+|||+||+++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 678899999988776665556667777877775 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHH
Q 003389 652 ASR-------FFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724 (824)
Q Consensus 652 ~~~-------Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~ 724 (824)
+.. ||+|+++++++.+++.+++.++++++|+..+|+.+++++++++++||||++++++||+||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 765 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccCCC--------CCC---------------------------CCcccchhHHHHhhcCCccCCc
Q 003389 725 YGQTSLLVNEFLGGRWDAQN--------KDP---------------------------SINQPTIGKVLLKIRGFSTESN 769 (824)
Q Consensus 725 Ya~~al~~NEf~~~~~~~~~--------~~~---------------------------~~~~~~~G~~~L~~~g~~~~~~ 769 (824)
|+++|++.|||.+....|.. |.+ .+|....|+++|+.+|+..++
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 99999999999998776632 111 123367999999999997655
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 770 WYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 770 ~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
+|+|+|++++|++++ ++++++|.|..+
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 699999999997666 888899988743
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.9e-92 Score=838.31 Aligned_cols=564 Identities=26% Similarity=0.409 Sum_probs=486.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++++|+||||.++||.+|||||+|||||||||++|||+... ..++|+|++||.+.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 567899999999999999999999999999999999999765 3679999999999986667899999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|||.|.|+|.+|.+. ++...+| ...+|++++.++|++++|.+||+.. .
T Consensus 881 VrESL~fSA~LRlp~-------~v~~~ek------------------------~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPK-------EVSDEEK------------------------YEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCC-------cCCHHHH------------------------HHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 999999999887542 1122221 2458899999999999999999877 9
Q ss_pred CCCHHHHHHHHHHHHHHcCC-cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC-
Q 003389 342 GISGGQKKRVTTGEMLVGTA-NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE- 419 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p-~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~- 419 (824)
|||.+||||++||.+|+.+| .||||||||||||+.++..|++.+|++++ .|.||+|+||||+.++++.||++++|.+
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999998 6999999999999999999999999975
Q ss_pred CeEEEecChh----hHHHHHHHcC-CCCCCCCCHHHHHHHhhcchhhhHHHhhcCCCCcCCChhHHHHHHhhchhhHHHH
Q 003389 420 GQIVYQGPRD----NVLEFFEHMG-FKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494 (824)
Q Consensus 420 G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 494 (824)
|++||.||.. .+++||++.| .+||+..|||||++|+++...+.+ ...++++.|++|+.++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 8999999974 5778999987 999999999999999997653321 1238999999999998887
Q ss_pred hhh---cCCCCCCCCCCCcccccccCCcHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcc
Q 003389 495 SDL---RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMN 571 (824)
Q Consensus 495 ~~l---~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~ 571 (824)
+++ +.|.+. .......+++|+.|+|.|++.|++|+++..||+|.+...|++.+++.|+++|+.||+.+ .+++
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q 1150 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQ 1150 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHH
Confidence 654 444433 12333445679999999999999999999999999999999999999999999999998 3567
Q ss_pred cchhhHHHHHHHHHHHHHh-hHHHHHHHhhhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCc
Q 003389 572 GGSRYFGALFFSLLNIMFN-GFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650 (824)
Q Consensus 572 ~~~~~~g~lFf~~~~~~f~-~~~~~~~~~~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~ 650 (824)
+.++.+|++|.++++..-+ +-...+..-.|+-+|||||..++|++.+|++|++++|+|+.++++++|.+++||++||..
T Consensus 1151 ~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~ 1230 (1391)
T KOG0065|consen 1151 GLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYW 1230 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchh
Confidence 7788999999887765443 223445556799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHH
Q 003389 651 AASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (824)
Q Consensus 651 ~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al 730 (824)
++.+|+.|++..++..+....+|+++.+++||..+|+.+.++++.++.+||||++|++.||.||+|+||+||+.|-.+++
T Consensus 1231 ~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gl 1310 (1391)
T KOG0065|consen 1231 TASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGL 1310 (1391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcccCCCCCCC----CcccchhHHHHhhcC----CccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003389 731 LVNEFLGGRWDAQNKDPS----INQPTIGKVLLKIRG----FSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (824)
Q Consensus 731 ~~NEf~~~~~~~~~~~~~----~~~~~~G~~~L~~~g----~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~ 798 (824)
+.-++++..-.|...+.. .+..+.|+.+-..+| +..+..-+ ...+..+|.+.+.+++.+.++|.+.
T Consensus 1311 i~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~--~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1311 ISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLAT--TACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred HHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcce--eEEEEeeeehHHHHHHHHHHHHHHH
Confidence 999999876555322100 134566776666677 54433222 2234556888888888888888764
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=384.24 Aligned_cols=222 Identities=26% Similarity=0.399 Sum_probs=190.0
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC----CCCceEEEEecCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQRTCAYISQHDLHH 257 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~----~~~~~i~yv~Q~d~~~ 257 (824)
++..+|+|||++|++||+++|+|||||||||||+||.|+..++ +|+|.++|.++... ..++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 4678999999999999999999999999999999999999997 99999999766421 2357899999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
|++||.||+..+... ++. ++. +......++|+.+||.+.+|.++.
T Consensus 90 PHlTvleNv~lap~~v~~~----------~k~------------------------eA~~~A~~lL~~VGL~~ka~~yP~ 135 (240)
T COG1126 90 PHLTVLENVTLAPVKVKKL----------SKA------------------------EAREKALELLEKVGLADKADAYPA 135 (240)
T ss_pred ccchHHHHHHhhhHHHcCC----------CHH------------------------HHHHHHHHHHHHcCchhhhhhCcc
Confidence 999999999987431 111 111 112245678999999999998766
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+|||||+.+|+++++|||||+|||....++++.++++++ .|.|+|+++|. ..-+.+.+|||+.
T Consensus 136 -----qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviF 208 (240)
T COG1126 136 -----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIF 208 (240)
T ss_pred -----ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEE
Confidence 5999999999999999999999999999999999999999999999997 58999998764 5577889999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|++|+++.+|+++++ |..|.+.-..+||..+
T Consensus 209 md~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 209 MDQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eeCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 999999999999877 5678777788887653
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-46 Score=387.93 Aligned_cols=225 Identities=27% Similarity=0.361 Sum_probs=198.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLH 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~ 256 (824)
...+|+|||++|++|++.+|+|.||||||||++++.++..|+ +|+|.++|+++.... .++.||+|+|+..+
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnL 94 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNL 94 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccc
Confidence 456999999999999999999999999999999999999998 999999998886543 24789999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+...||.||++|..+..+.. +.+ ...++.++|+.+||++.+|..+.
T Consensus 95 LssrTV~~NvA~PLeiag~~----------k~e------------------------i~~RV~elLelVgL~dk~~~yP~ 140 (339)
T COG1135 95 LSSRTVFENVAFPLELAGVP----------KAE------------------------IKQRVAELLELVGLSDKADRYPA 140 (339)
T ss_pred cccchHHhhhhhhHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhccCch
Confidence 99999999999998876642 111 22357889999999999987766
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+|||||+.+|++||+|||||+|||.|+..|++.|+++.++.|.|++++.|+ .+-+.++||||.+
T Consensus 141 -----qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVav 214 (339)
T COG1135 141 -----QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAV 214 (339)
T ss_pred -----hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheE
Confidence 4999999999999999999999999999999999999999999999999999999998766 4578889999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhcc
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSK 458 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s~ 458 (824)
|++|+++++|+..++ |..|.+.-...|+.+....
T Consensus 215 m~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~~ 248 (339)
T COG1135 215 LDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLEI 248 (339)
T ss_pred eeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhccc
Confidence 999999999999888 4568777777777766543
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-45 Score=398.03 Aligned_cols=217 Identities=29% Similarity=0.408 Sum_probs=195.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|||++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|++++...| +|.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 999999999999999999999999999999999999997 9999999999998776 488999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.|+.+.++... .+ ...+++++.+.|+|++..|+++. +||
T Consensus 95 Niaf~Lk~~~~~k--------------------~e--------------i~~rV~eva~~L~l~~lL~r~P~-----~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK--------------------AE--------------IDKRVKEVAKLLGLEHLLNRKPL-----QLS 135 (338)
T ss_pred HhhhhhhhCCCch--------------------HH--------------HHHHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 9999988776421 11 12357788999999999998765 599
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+|||||+.+|++++||||+|+||...+.++...|+++.++.+.|+|.++| +..|+..++|||.+|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH-Dq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH-DQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC-CHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999999888889888765 5568999999999999999999
Q ss_pred ecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 425 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
.|++.++ |..|.+.-+|+|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 56788888888863
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9e-45 Score=393.21 Aligned_cols=221 Identities=31% Similarity=0.452 Sum_probs=188.8
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEec
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQ 252 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q 252 (824)
++.+.+..++.+|+||||+|++|+++||+||||||||||+|+|+|+..|+ +|+|.++|.+.... ..++.+||++|
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~ 85 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQ 85 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEcc
Confidence 34333332578999999999999999999999999999999999999997 99999999887642 23578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.+++.+||+|||.|.+++++.... .....++++++.+||++..+
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~ 131 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKAN 131 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhC
Confidence 99999999999999999988765210 01124678999999998555
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
++++ +||+||||||+||.||+.+|++|||||||+|||+.++.++.+.|+++++..++||++++|++ .++..+||
T Consensus 132 ~~~~-----~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d 205 (293)
T COG1131 132 KKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCD 205 (293)
T ss_pred cchh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCC
Confidence 5554 59999999999999999999999999999999999999999999999986457888887654 58889999
Q ss_pred eEEEEcCCeEEEecChhhHHHHHHHc
Q 003389 413 DIILLSEGQIVYQGPRDNVLEFFEHM 438 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~~f~~~ 438 (824)
+|++|++|++++.|+.+++...+...
T Consensus 206 ~v~il~~G~~~~~g~~~~l~~~~~~~ 231 (293)
T COG1131 206 RVIILNDGKIIAEGTPEELKEKFGGK 231 (293)
T ss_pred EEEEEeCCEEEEeCCHHHHHHhhccC
Confidence 99999999999999999887765543
No 14
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-45 Score=396.53 Aligned_cols=223 Identities=29% Similarity=0.413 Sum_probs=199.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
+..+|+|||++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+..+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 678999999999999999999999999999999999999998 9999999999998766 588999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++.. ++.+ ...+++++|+.++|++.++.++.
T Consensus 94 V~~NVafGLk~~~~~-------------------~~~~--------------i~~rv~e~L~lV~L~~~~~R~p~----- 135 (352)
T COG3842 94 VEENVAFGLKVRKKL-------------------KKAE--------------IKARVEEALELVGLEGFADRKPH----- 135 (352)
T ss_pred HHHHhhhhhhhcCCC-------------------CHHH--------------HHHHHHHHHHHcCchhhhhhChh-----
Confidence 999999998743311 0111 12357889999999998887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||++||||+.+|++||||||.|+||..-+.++..-|+++.++.|.|.|+++| +..|.+.++|||.+|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH-DqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH-DQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC-CHHHHhhhccceEEccCCc
Confidence 599999999999999999999999999999999999999999999999999999999765 5668999999999999999
Q ss_pred EEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 422 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|...|+++++ |..|...-+|||+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5689888899998754
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.8e-44 Score=377.89 Aligned_cols=211 Identities=29% Similarity=0.438 Sum_probs=182.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++.||+|+||+|++|++++|+||||||||||||+|+|+++|. +|+|.++|+++..... .+.++||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 567999999999999999999999999999999999999997 9999999999987654 4789999999988899
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+|.+.++..-+... ... +. .++...++..|+.+|+.+.+++.+.+
T Consensus 91 ~tV~d~V~~GR~p~~~~-----~~~-----------~~--------------~~D~~~v~~aL~~~~~~~la~r~~~~-- 138 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-----FGR-----------PS--------------KEDEEIVEEALELLGLEHLADRPVDE-- 138 (258)
T ss_pred cEEeehHhhcCCccccc-----ccC-----------CC--------------HhHHHHHHHHHHHhCcHHHhcCcccc--
Confidence 99999998874321100 000 00 11122467789999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||.||+||+.+|++|+||||||.||...+.++++.+++++++.|.|+|+++|+ ...+.++||++++|++
T Consensus 139 ---LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD-lN~A~ryad~~i~lk~ 214 (258)
T COG1120 139 ---LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD-LNLAARYADHLILLKD 214 (258)
T ss_pred ---cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998889999998765 4578999999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++++|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998775
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=363.61 Aligned_cols=226 Identities=27% Similarity=0.356 Sum_probs=188.9
Q ss_pred hcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCce
Q 003389 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRT 246 (824)
Q Consensus 173 ~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~ 246 (824)
+.++.+.+++++++|+|||+.|++||+++|+|||||||||||++|+|+.+++ +|+|.+||.++.... .++.
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHh
Confidence 3344455556788999999999999999999999999999999999999987 999999998876543 2478
Q ss_pred EEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 247 i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+||++|+..+.+.+||.+|+..+..-+.. .-..++...+++++ ..+-+.|+.+|
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s-~~~slfglfsk~dk-------------------------~~Al~aLervg 136 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTS-TWRSLFGLFSKEDK-------------------------AQALDALERVG 136 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccch-HHHHHhCCCCHHHH-------------------------HHHHHHHHHcC
Confidence 99999999999999999999887533221 10111111122222 23345789999
Q ss_pred CCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 327 L~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+.+.+-++.+. |||||+|||+|||+|+.+|+++|.|||+++|||.++.++|+.|++++++.|.|+|+.+|| ..-
T Consensus 137 i~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdl 210 (258)
T COG3638 137 ILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDL 210 (258)
T ss_pred cHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHH
Confidence 99999888875 999999999999999999999999999999999999999999999999999999999876 457
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+.++||||+-|++|+|+|+||++++.+
T Consensus 211 A~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 211 AKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHHhhheEecCCcEEEeCChhhhhH
Confidence 889999999999999999999988654
No 17
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-43 Score=362.31 Aligned_cols=208 Identities=27% Similarity=0.398 Sum_probs=185.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
++.+++|+|++|++||++.++|||||||||+||+|.++.+|+ +|+|.+||+++.+.. .++.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 577999999999999999999999999999999999999997 999999999987654 36899999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--cccccccC
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGD 337 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~ 337 (824)
+||.||+.+-..+.+.... +...+++++|+.+||+. .+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~k~----------------------------------~i~~r~~ELl~lvgL~p~~~~~R---- 131 (309)
T COG1125 90 LTVAENIATVPKLLGWDKE----------------------------------RIKKRADELLDLVGLDPSEYADR---- 131 (309)
T ss_pred ccHHHHHHhhhhhcCCCHH----------------------------------HHHHHHHHHHHHhCCCHHHHhhc----
Confidence 9999999987766654210 11235788999999974 4554
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
++++|||||+|||.+||||+.+|++|+||||+++|||-++.++.+.++++.++.++|+|+++ |+..|++.++|||.+|
T Consensus 132 -yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-HDidEA~kLadri~vm 209 (309)
T COG1125 132 -YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEALKLADRIAVM 209 (309)
T ss_pred -CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-cCHHHHHhhhceEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999975 5688999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999863
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.4e-43 Score=360.73 Aligned_cols=195 Identities=26% Similarity=0.399 Sum_probs=170.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
.++|++||+.|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 57999999999999999999999999999999999999997 999999998886543 23679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc-ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD-TMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d-t~v 335 (824)
+|++||+||+.+.+...+.... ......+.+++.+||.+..+ .++
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999987766543210 01123567889999987666 555
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
. .|||||||||+|||||+.+|+++|.||||.+||+.++..|++.|++++++.|+|+|+++|.| ++...|||++
T Consensus 141 ~-----eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 141 S-----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 5 59999999999999999999999999999999999999999999999988899999998765 6888999999
Q ss_pred EEcCCeE
Q 003389 416 LLSEGQI 422 (824)
Q Consensus 416 lL~~G~i 422 (824)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999994
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-43 Score=361.50 Aligned_cols=195 Identities=26% Similarity=0.352 Sum_probs=172.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+|+|||++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 67999999999999999999999999999999999999997 999999999984 3567899999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.|+....+... .+ ...+++++|+.+||.+..|..+. .|
T Consensus 91 ~NV~l~l~~~~~~~----------~e------------------------~~~~a~~~L~~VgL~~~~~~~P~-----qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------AE------------------------ARERAKELLELVGLAGFEDKYPH-----QL 131 (248)
T ss_pred hhheehhhccccch----------Hh------------------------HHHHHHHHHHHcCCcchhhcCcc-----cc
Confidence 99999987665211 11 11246779999999999887765 59
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--Ce
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~ 421 (824)
||||||||+|||||+.+|++|+||||+++||..|+.++.+.|.++.++.+.|+++++ |+.+|...++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT-Hdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT-HDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe-CCHHHHHhhhCEEEEecCCCcc
Confidence 999999999999999999999999999999999999999999999998889999976 456789999999999998 55
Q ss_pred EE
Q 003389 422 IV 423 (824)
Q Consensus 422 iv 423 (824)
|.
T Consensus 211 i~ 212 (248)
T COG1116 211 IG 212 (248)
T ss_pred ee
Confidence 53
No 20
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-43 Score=366.93 Aligned_cols=225 Identities=30% Similarity=0.479 Sum_probs=192.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc---ccCCCCC-CceEEEEecCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEFVP-QRTCAYISQHDLHH 257 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~---~~~~~~~-~~~i~yv~Q~d~~~ 257 (824)
+...+++|||+.|+.||++||+|||||||||||++|||+..|+ +|.|.+||+ +.+.... .|.||||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 4567899999999999999999999999999999999999998 999999999 6555322 48899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
++|||.+|+.|+.+++.. +|++ .+...+++++|+.+.|++.++.++
T Consensus 90 ~HmtVa~NIAFGl~~~~~-------------------~p~~-------------~~~r~rv~elL~lvqL~~la~ryP-- 135 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE-------------------RPSE-------------AEIRARVEELLRLVQLEGLADRYP-- 135 (345)
T ss_pred ccchHHhhhhhccccccc-------------------CCCh-------------hhHHHHHHHHHHHhcccchhhcCc--
Confidence 999999999999876521 1110 011235778899999998887665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..|||||||||++||||+..|++|+||||+++||..-+.++.+.|+++.+..|.|+++++ |+.+|++++||||++|
T Consensus 136 ---~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVT-HD~eea~~ladrvvvl 211 (345)
T COG1118 136 ---AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVT-HDQEEALELADRVVVL 211 (345)
T ss_pred ---hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEe-CCHHHHHhhcceEEEe
Confidence 469999999999999999999999999999999999999999999999988788888876 4567999999999999
Q ss_pred cCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
++|+|...||++++ |..|...-++.|+-++
T Consensus 212 ~~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~~ 241 (345)
T COG1118 212 NQGRIEQVGPPDEV--------YDHPASRFVARFLGEV 241 (345)
T ss_pred cCCeeeeeCCHHHH--------hcCCCccceecccccc
Confidence 99999999999998 4567766666666443
No 21
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.1e-42 Score=412.13 Aligned_cols=258 Identities=26% Similarity=0.405 Sum_probs=220.3
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+...+|+.++++.++|....+. ....+...-+++|+|+++.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~--------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGP--------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccc-----cccccccCceEEEEEEEEEeCC---------------------------
Confidence 57788999999999999998422210 1222333468999999987531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+..+|+|+|++|+|||.+||+|+||||||||+|+|+|+++|. +|+|.+||.+++.... ++.++||+|+
T Consensus 484 -----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 484 -----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred -----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 1235999999999999999999999999999999999999997 9999999999877654 6899999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++. -||+||+.++ .|+.+.+++++|+..++.+.. +..++..+||
T Consensus 556 ~~Lf~-gSI~eNi~l~-------------------------~p~~~~e~i~~A~~~ag~~~f--------I~~lP~gy~t 601 (709)
T COG2274 556 PFLFS-GSIRENIALG-------------------------NPEATDEEIIEAAQLAGAHEF--------IENLPMGYDT 601 (709)
T ss_pred chhhc-CcHHHHHhcC-------------------------CCCCCHHHHHHHHHHhCcHHH--------HHhccccccc
Confidence 77765 4999999886 355666788888888876653 5678999999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+ +..+||||||||++|||||+.+|+||+||||||+||+.++..|.+.|.++.+ ++|+|++.|++ .+.+.||+
T Consensus 602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adr 676 (709)
T COG2274 602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADR 676 (709)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccE
Confidence 9995 6677999999999999999999999999999999999999999999999975 78999988876 58899999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+||++|+|+.+|+++++.+
T Consensus 677 IiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 677 IIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred EEEccCCceeccCCHHHHHH
Confidence 99999999999999999876
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-43 Score=348.66 Aligned_cols=218 Identities=30% Similarity=0.359 Sum_probs=190.9
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEE
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAY 249 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~y 249 (824)
++.++.++++...++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+..... .++.+|.
T Consensus 3 ~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 3 EVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcce
Confidence 34455566665556999999999999999999999999999999999999998 999999999875432 3688999
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
++.+..++..||++|||.|-+++.++. +.+ .+.+++++.+.|+|..
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~----------~~~------------------------~kari~~l~k~l~l~~ 125 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLS----------RKE------------------------IKARIAELSKRLQLLE 125 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhh----------hhH------------------------HHHHHHHHHHHhChHH
Confidence 998889999999999999999887653 211 1234677889999999
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
|.|+.+|+ +|-|+||||+|||||+.+|++++|||||||||..+...+.+.++++.. .|+++|.+. |..+|+..
T Consensus 126 ~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSS-H~m~Evea 198 (245)
T COG4555 126 YLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSS-HIMQEVEA 198 (245)
T ss_pred HHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEec-ccHHHHHH
Confidence 99999986 999999999999999999999999999999999999999999999875 588999875 56889999
Q ss_pred hcCeEEEEcCCeEEEecChhhHHH
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+||+|++|++|++|+.|+++.+..
T Consensus 199 lCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 199 LCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999987754
No 23
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.9e-43 Score=356.11 Aligned_cols=210 Identities=24% Similarity=0.373 Sum_probs=180.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDL 255 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~ 255 (824)
+.+.|++|||++|++||+++|+||||||||||||+|.|+++|+ +|+|.++|+++..... ++.+|+++|+..
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4678999999999999999999999999999999999999998 9999999999865432 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-cccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~ 334 (824)
+|..|||+||+.|..+-+.. +.+ ..++ ..+..-|+..||... +|
T Consensus 96 LFssltV~eNVafplre~~~---------lp~----------~~i~--------------~lv~~KL~~VGL~~~~~~-- 140 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK---------LPE----------SLIR--------------ELVLMKLELVGLRGAAAD-- 140 (263)
T ss_pred cccccchhHhhheehHhhcc---------CCH----------HHHH--------------HHHHHHHHhcCCChhhhh--
Confidence 99999999999997653221 111 1111 123345778899865 55
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.++.+||||++||+++||||+.+|++||+||||+||||.++..+.++++++.+..+.|+++++| +.++++.+||++
T Consensus 141 ---~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH-Dl~s~~~i~Drv 216 (263)
T COG1127 141 ---LYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH-DLDSLLTIADRV 216 (263)
T ss_pred ---hCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC-ChHHHHhhhceE
Confidence 4556799999999999999999999999999999999999999999999999988999998765 566899999999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (824)
++|.+|+|+.+|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999998863
No 24
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-42 Score=383.18 Aligned_cols=207 Identities=26% Similarity=0.362 Sum_probs=180.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++|
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 356999999999999999999999999999999999999987 9999999998875443 478999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++.. +.+ ....++++++.+||++..+..+.
T Consensus 93 v~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~----- 133 (356)
T PRK11650 93 VRENMAYGLKIRGMP----------KAE------------------------IEERVAEAARILELEPLLDRKPR----- 133 (356)
T ss_pred HHHHHHhHHhhcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChh-----
Confidence 999999986543211 000 11235678999999988887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+..+.|+|+++|++ .++.++||+|++|++|+
T Consensus 134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~ 212 (356)
T PRK11650 134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGV 212 (356)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 59999999999999999999999999999999999999999999999876688998887654 57899999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (356)
T PRK11650 213 AEQIGTPVEVY 223 (356)
T ss_pred EEEECCHHHHH
Confidence 99999998874
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-42 Score=358.11 Aligned_cols=207 Identities=28% Similarity=0.444 Sum_probs=175.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCC--CCCCCCH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL--HHGEMTV 262 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~--~~~~lTV 262 (824)
++|+|||++|++|++++|+||||||||||+|+|.|+++|. +|+|.++|.+......+..||||||... .-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999997 9999999998877655678999999642 2234699
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+|.+..+...+. + .+...++ +++..++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g----~~~~~~~-------------------------~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G----WFRRLNK-------------------------KDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c----ccccccH-------------------------HHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999987632211 1 1111111 1123578899999999999999986
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|.+.|+++.++ |+||+++. |+...+.++||+|++|+ +++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vt-HDL~~v~~~~D~vi~Ln-~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVT-HDLGLVMAYFDRVICLN-RHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEe-CCcHHhHhhCCEEEEEc-Cee
Confidence 9999999999999999999999999999999999999999999999987 99999875 55668999999999996 678
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+++++.
T Consensus 217 ~~~G~~~~~~ 226 (254)
T COG1121 217 IASGPPEEVL 226 (254)
T ss_pred EeccChhhcc
Confidence 8999998875
No 26
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-42 Score=392.41 Aligned_cols=249 Identities=22% Similarity=0.387 Sum_probs=206.2
Q ss_pred HHHHHHHHhccChHHHHHHHhhhccccCCCC---CcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccC
Q 003389 103 LLESILKIVEEDNEKFLKRIRHRTDRVGIEI---PKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPS 179 (824)
Q Consensus 103 ~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~---p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~ 179 (824)
.-+|+++.+|-.|. + +.-|... .+-.|+|+|+++.+..
T Consensus 437 As~rvFel~dr~P~-----i----~~~G~~~p~~~~G~IeF~~VsFaYP~------------------------------ 477 (716)
T KOG0058|consen 437 ASERVFELMDRKPR-----I----PLTGTLAPDHLQGVIEFEDVSFAYPT------------------------------ 477 (716)
T ss_pred hHHHHHHHhccCCC-----C----CCCCccccccccceEEEEEeeeecCC------------------------------
Confidence 44566666655544 1 1114333 3568999999986521
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLH 256 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~ 256 (824)
+ .+.+||||+||+|+|||.|||+||||+||||+.++|-.+++|+ +|+|++||+|+.++.+ +++||+|.|++.+
T Consensus 478 R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL 553 (716)
T KOG0058|consen 478 R-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVL 553 (716)
T ss_pred C-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeecccee
Confidence 1 2467999999999999999999999999999999999999997 9999999999988765 5889999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
|.. ||+|||.|+.. +.+.++++.|+..++.+.. +.++++.+||.||
T Consensus 554 Fs~-sI~eNI~YG~~-------------------------~~t~e~i~~AAk~ANah~F--------I~~~p~gY~T~VG 599 (716)
T KOG0058|consen 554 FSG-SIRENIAYGLD-------------------------NATDEEIEAAAKMANAHEF--------ITNFPDGYNTVVG 599 (716)
T ss_pred ecc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhChHHH--------HHhCccccccccC
Confidence 976 99999999742 3344566667776665554 5589999999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
++. ..||||||||++|||||+++|+||||||.||+||++++..+.+.|.++.+ ++||+++-|. -++.+.+|+|++
T Consensus 600 EkG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHR--LSTV~~Ad~Ivv 674 (716)
T KOG0058|consen 600 EKG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHR--LSTVRHADQIVV 674 (716)
T ss_pred Ccc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehh--hhHhhhccEEEE
Confidence 754 45999999999999999999999999999999999999999999999876 5888886554 468899999999
Q ss_pred EcCCeEEEecChhhHHH
Q 003389 417 LSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~ 433 (824)
+++|++++.|+++++++
T Consensus 675 i~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 675 IDKGRVVEMGTHDELLS 691 (716)
T ss_pred EcCCeEEecccHHHHhh
Confidence 99999999999999864
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.5e-42 Score=379.88 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=186.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 46899999999999999999999999999999999999987 9999999998865433 4779999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++.. +.+ ....++++++.+||++..|+.+. .
T Consensus 94 ~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~l~L~~~~~~~~~-----~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------RAE------------------------VAERVAELLDLVGLPGSERKYPG-----Q 134 (353)
T ss_pred HHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCCchhhCChh-----h
Confidence 99999986533211 000 11246778999999998887765 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++||||||++|||..++.++.+.|+++.++.+.|+|+++|++ .++..+||+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876688998887655 588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
+..|+++++.+ .|....++.|+
T Consensus 214 ~~~g~~~~~~~--------~p~~~~~a~~~ 235 (353)
T TIGR03265 214 EQVGTPQEIYR--------HPATPFVADFV 235 (353)
T ss_pred EEEcCHHHHHh--------CCCCHHHHHhc
Confidence 99999988743 45544455554
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.8e-42 Score=376.72 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=178.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~~~ 257 (824)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999997 9999999998865432 45799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.|.....+... . +...++.++++.+||.+..|..++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~------------------------~~~~~v~e~l~~vgL~~~~~~~~~- 139 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------D------------------------EIKRKVTELLALVGLGDKHDSYPS- 139 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999998754332210 0 011235678999999988887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+.|+|+++|+ .+.+.++||+|++|
T Consensus 140 ----~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl 214 (343)
T TIGR02314 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999987668899987765 55788999999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998873
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-42 Score=378.98 Aligned_cols=218 Identities=24% Similarity=0.392 Sum_probs=186.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 46899999999999999999999999999999999999997 9999999998876444 4789999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||.+..+..+. .
T Consensus 96 ~eNi~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gl~~~~~r~~~-----~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------EE------------------------RKQRVKEALELVDLAGFEDRYVD-----Q 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhcCChh-----h
Confidence 999999865433210 00 11245778999999988877665 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..+.|+|+++|+ ..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD-QSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987668898887665 4588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
+..|+++++. ..|....+|.|+
T Consensus 216 ~~~g~~~~~~--------~~p~~~~~a~~~ 237 (351)
T PRK11432 216 MQIGSPQELY--------RQPASRFMASFM 237 (351)
T ss_pred EEEcCHHHHH--------hCCCchHHHHhc
Confidence 9999998873 235555555554
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.1e-41 Score=376.56 Aligned_cols=206 Identities=22% Similarity=0.358 Sum_probs=179.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCc--ceEeeCCcccCCCCC-CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS--GKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~s--G~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ + |+|.++|+++....+ ++.++||+|+..++|++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 46999999999999999999999999999999999999987 8 999999998865433 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.|+.+.++... . +....++++++.+||++..|+.++
T Consensus 95 tv~enl~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gL~~~~~~~~~---- 136 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------A------------------------DIAERVADALKLVGLGDAAAHLPA---- 136 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHhcCCCchhhCChh----
Confidence 99999999865432210 0 011235778999999998887776
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~-~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++. +.|+|+++|+ ..++..++|+|++|++
T Consensus 137 -~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd-~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 137 -QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD-QDDALTLADKAGIMKD 214 (362)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998764 7888887655 5588999999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999874
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-42 Score=342.14 Aligned_cols=223 Identities=24% Similarity=0.399 Sum_probs=181.9
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCCcceEeeCCcccCCC-----CCCceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d 254 (824)
+.+.+|+|||+.|+++++|||||||||||||||++|..+.+. ..+++|+|.|+|+++.+. ..++.+|+|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 356799999999999999999999999999999999988654 457889999999988653 2368899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
.-|| +|++||+.|+.+++|... .+.++ +++..|+.-+|. ...|.
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~--------------------~~lde--------------iVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD--------------------KELDE--------------IVESSLKKAALWDEVKDR 142 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch--------------------HHHHH--------------HHHHHHHHhHhHHHhHHH
Confidence 9999 899999999999887632 11111 233334444442 12222
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+ ++...+|||||+||++|||+|+.+|+|||||||||+|||.++.+|-+++.++.+ +-|||+++| ....+.+..|+
T Consensus 143 L--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTH-nmqQAaRvSD~ 217 (253)
T COG1117 143 L--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH-NMQQAARVSDY 217 (253)
T ss_pred h--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeC-CHHHHHHHhHh
Confidence 1 123456999999999999999999999999999999999999999999999975 678888765 45688899999
Q ss_pred EEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
..++..|++|++|+++++ |..|.++.+.||+
T Consensus 218 taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 218 TAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 999999999999999987 5678887777775
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.2e-41 Score=377.71 Aligned_cols=219 Identities=26% Similarity=0.361 Sum_probs=187.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999998865443 4779999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||++..++.+. .
T Consensus 104 ~eNi~~~l~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~p~-----~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------AE------------------------ITPRVMEALRMVQLEEFAQRKPH-----Q 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh-----h
Confidence 999999865332210 00 01235678999999988887765 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||+|+.+|++|||||||+|||..++..+.+.|+++.+..+.|+|+++|+ ..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd-~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD-QEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999988668898887665 5588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
+..|+++++. ..|....+|+|+-
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~g 246 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFIG 246 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhcC
Confidence 9999998873 3566666677653
No 33
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.7e-41 Score=367.63 Aligned_cols=206 Identities=29% Similarity=0.440 Sum_probs=178.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 56999999999999999999999999999999999999997 999999999875422 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|.++.++... . + ....++++++.++|.+..++.+++
T Consensus 97 v~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------A----------A--------------ARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchHhcCchhh----
Confidence 9999998765543210 0 0 011346788999999888888764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+|+++|+ ..++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~-l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHF-MEEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 48898888765 458889999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999988754
No 34
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=9.8e-41 Score=370.48 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=180.6
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d 254 (824)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 3456999999999999999999999999999999999999997 9999999999875433 46799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+++++||+||+.|.....+... .+ ....+.++++.+||++..++.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~vgL~~~~~~~ 126 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPE----------QE------------------------RKEKALELLKLVGLEEYEHRY 126 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHhcCCchhhhCC
Confidence 99999999999999765433210 00 112356789999998888877
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+..++|+|+++|+ ..++.++||+|
T Consensus 127 p~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd-~~ea~~~~drI 200 (363)
T TIGR01186 127 PDE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRI 200 (363)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEE
Confidence 764 999999999999999999999999999999999999999999999987668899887655 55788999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|+++..|+++++.
T Consensus 201 ~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 201 VIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEeCCEEEeeCCHHHHH
Confidence 999999999999998875
No 35
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-41 Score=328.27 Aligned_cols=201 Identities=25% Similarity=0.401 Sum_probs=178.5
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHHH
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
..++.|++||++||+||||||||||||+|||+..|. +|+|++||++.....| +|.+++++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 568899999999999999999999999999999997 9999999999876655 588999999999999999999998
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
++..- +-+ +.. +..+.++.++...||..+.+..++. |||||
T Consensus 94 LGl~P---~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLSP---GLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCCc---ccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 87431 110 000 1123467788999999999988875 99999
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecC
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~ 427 (824)
||||++||+|+++-+||+||||+|+||+.-+.++...+.+++.+.+.|+++++|||. ++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999886 7889999999999999999999
Q ss_pred hhhHH
Q 003389 428 RDNVL 432 (824)
Q Consensus 428 ~~~~~ 432 (824)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=350.11 Aligned_cols=206 Identities=27% Similarity=0.370 Sum_probs=173.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999987 999999998875432 245799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+........ .+.+ ....++++++.+||.+..++.++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~---------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~- 135 (235)
T cd03261 90 DSLTVFENVAFPLREHTRL---------SEEE------------------------IREIVLEKLEAVGLRGAEDLYPA- 135 (235)
T ss_pred CCCcHHHHHHHHHhhccCC---------CHHH------------------------HHHHHHHHHHHcCCchhhcCChh-
Confidence 9999999998864321100 0000 01134568899999887777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|
T Consensus 136 ----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l 210 (235)
T cd03261 136 ----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVL 210 (235)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEE
Confidence 49999999999999999999999999999999999999999999999864578888877654 4778899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|++++.|+++++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999998765
No 37
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.3e-41 Score=328.97 Aligned_cols=209 Identities=25% Similarity=0.377 Sum_probs=180.9
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEE
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCA 248 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~ 248 (824)
++.+.|..+.++|+||||.|++||++-|+||||||||||||+|.+..+|+ +|+|++||+++.... .+|+||
T Consensus 6 ~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 6 NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheee
Confidence 34456666677999999999999999999999999999999999999997 999999999986543 258899
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 249 yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
+|+||..++++.||.||++|+.+..|...+ +...++.++|+..||.
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~----------------------------------~i~~rV~~~L~~VgL~ 128 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPR----------------------------------EIRRRVSEVLDLVGLK 128 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHH----------------------------------HHHHHHHHHHHHhccc
Confidence 999999999999999999999887765311 1123567799999999
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
+.++..+- .|||||||||+||||++.+|++|+.||||-+||+.++.+|++.+.++.+ .|.||++++| +..-+-
T Consensus 129 ~k~~~lP~-----~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATH-d~~lv~ 201 (223)
T COG2884 129 HKARALPS-----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATH-DLELVN 201 (223)
T ss_pred hhhhcCcc-----ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEec-cHHHHH
Confidence 98886654 5999999999999999999999999999999999999999999999986 6999999875 444566
Q ss_pred hhcCeEEEEcCCeEEEecC
Q 003389 409 DLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~ 427 (824)
++--+++.|++|+++....
T Consensus 202 ~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 202 RMRHRVLALEDGRLVRDES 220 (223)
T ss_pred hccCcEEEEeCCEEEeccc
Confidence 6788999999999987654
No 38
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-41 Score=374.19 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=185.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
..+|+|+|++|++|++++|+|||||||||||++|+|+.+|+ +|+|.++|+++....+ ++.++||+|+..++|++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 46899999999999999999999999999999999999987 9999999998865433 5789999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.||+.|+.+.++.. +. +....++++++.+||.+..++.+. +
T Consensus 109 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~l~L~~~~~~~~~-----~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KA------------------------EIASRVNEMLGLVHMQEFAKRKPH-----Q 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99999986533211 00 011235678999999988777665 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++|||||||+|||..++.++.+.|+++.+..+.|+|+++|+ ..++..++|++++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD-QEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999987668898887665 5588999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
+..|+++++. ..|....+|+|+
T Consensus 229 ~~~g~~~~~~--------~~p~~~~~a~~~ 250 (377)
T PRK11607 229 VQIGEPEEIY--------EHPTTRYSAEFI 250 (377)
T ss_pred EEEcCHHHHH--------hCCccHHHHHhc
Confidence 9999998874 235544456654
No 39
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8.4e-41 Score=371.00 Aligned_cols=222 Identities=27% Similarity=0.428 Sum_probs=184.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++....+ ++.++||+|+..+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 46999999999999999999999999999999999999987 9999999998865433 3679999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+....... ..+. +....++++++.+||++..++.+. .
T Consensus 92 ~eni~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNAA------------------------AIKAKVTQLLEMVQLAHLADRYPA-----Q 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCHH------------------------HHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 9999997643210000 0000 011245678999999988887765 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|+++|+ ..++..+||+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd-~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD-QEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987668888887655 5688999999999999999
Q ss_pred EEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 423 v~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
++.|+++++.. .|...-+++|+
T Consensus 216 ~~~g~~~~i~~--------~p~~~~~~~~~ 237 (353)
T PRK10851 216 EQAGTPDQVWR--------EPATRFVLEFM 237 (353)
T ss_pred EEEcCHHHHHh--------CccchHHHHhc
Confidence 99999988742 35444455554
No 40
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=371.73 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=177.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 46999999999999999999999999999999999999987 9999999998865432 4679999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||++..++.++ .
T Consensus 93 ~eni~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~lgL~~~~~~~~~-----~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------EE------------------------INQRVNQVAEVLQLAHLLDRKPK-----A 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999998754332110 00 01235678999999988887765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++..+||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875688988887654 578899999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 41
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.2e-40 Score=389.93 Aligned_cols=207 Identities=26% Similarity=0.377 Sum_probs=175.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.+||+||||||||||+++|+|++ |. +|+|.+||+++.+... ++.++||+|++.+|..
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 46999999999999999999999999999999999999 76 9999999999877643 5789999999877765
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++. |+.+.+++.+++...+.+. . .-.|++..||.||+. .
T Consensus 438 TI~eNI~~g~-------------------------~~~~~eei~~al~~a~l~~------~--i~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGN-------------------------PDASDEQLQQALENAWVSE------F--LPLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCC-------------------------CCCCHHHHHHHHHHhCHHH------H--HHhcccccccccccC-C
Confidence 9999998862 2233345555554443222 2 235677889999975 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++.+ ++|+|++.|++ ++.+.||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 56999999999999999999999999999999999999999999999863 78999988887 567889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999998863
No 42
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.8e-40 Score=361.94 Aligned_cols=207 Identities=27% Similarity=0.421 Sum_probs=177.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875321 245699999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.++.++... .+ ....++++++.+||.+..++.+++
T Consensus 82 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 124 (302)
T TIGR01188 82 TGRENLEMMGRLYGLPK----------DE------------------------AEERAEELLELFELGEAADRPVGT--- 124 (302)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhCCchhh---
Confidence 99999998765443210 00 011356789999999888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|+ ..++.++||+|++|++|
T Consensus 125 --LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~-~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 125 --YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHY-MEEADKLCDRIAIIDHG 200 (302)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 48898887665 45888999999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 201 ~i~~~g~~~~l~~ 213 (302)
T TIGR01188 201 RIIAEGTPEELKR 213 (302)
T ss_pred EEEEECCHHHHHH
Confidence 9999999988754
No 43
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=340.48 Aligned_cols=204 Identities=26% Similarity=0.315 Sum_probs=175.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCC--CCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHD--LHHG 258 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d--~~~~ 258 (824)
++|+|||++|.+||+++|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+.+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999997 999999998776532 357899999997 5789
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-ccccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~ 337 (824)
..||++.|.-+.+..+.+. . ...+.++|+.+||+.. ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~~----------~--------------------------~~~i~~~L~~VgL~~~~l~----- 136 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK----------S--------------------------QQRIAELLDQVGLPPSFLD----- 136 (252)
T ss_pred chhHHHHHhhhhccCCccH----------H--------------------------HHHHHHHHHHcCCCHHHHh-----
Confidence 9999999987665433211 1 1125678999999743 34
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
+.+.+||||||||++|||||+.+|++|++|||||+||+..+.+|++.|.++.++.+.|.+++. |+..-+..+||||+||
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~Is-Hdl~~v~~~cdRi~Vm 215 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS-HDLALVEHMCDRIAVM 215 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEe-CcHHHHHHHhhheeee
Confidence 345569999999999999999999999999999999999999999999999998888888865 5566888999999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
++|++++.++.+++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999998864
No 44
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-41 Score=342.82 Aligned_cols=229 Identities=24% Similarity=0.349 Sum_probs=189.7
Q ss_pred hcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEE
Q 003389 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCA 248 (824)
Q Consensus 173 ~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~ 248 (824)
..++. ++.+...+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...+. .-++
T Consensus 7 v~~l~-k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 7 VRGLS-KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eccce-eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccce
Confidence 34443 3345678999999999999999999999999999999999999998 99999999999877653 4578
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 249 yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
..+|...+|++|||.||+..++..+.. ... .+ ...+.. .+.++ ......++|+.+||.
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-~~~-~l-~~~~~~--------~~e~~-----------~~e~A~~~Le~vgL~ 140 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-LSG-LL-GRPRAR--------KEERE-----------ARERARELLEFVGLG 140 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-hhh-hh-ccccch--------hhHHH-----------HHHHHHHHHHHcCCc
Confidence 899999999999999999998765421 000 00 000000 00011 122456799999999
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
+++|+..|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+..+.|+++ +.|+..-++
T Consensus 141 ~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till-IEHdM~~Vm 214 (250)
T COG0411 141 ELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL-IEHDMKLVM 214 (250)
T ss_pred hhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EEeccHHHh
Confidence 999999986 99999999999999999999999999999999999999999999999865677776 567888999
Q ss_pred hhcCeEEEEcCCeEEEecChhhHHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
++||||+||+.|+++.+|+++++.+
T Consensus 215 ~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 215 GLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred hhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999999999853
No 45
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=347.97 Aligned_cols=207 Identities=26% Similarity=0.369 Sum_probs=179.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC----CCCCCceEEEEecCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----EFVPQRTCAYISQHD-LHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~----~~~~~~~i~yv~Q~d-~~~~ 258 (824)
..+|+|+|+.|++|+.++|+||||||||||+++|+|+++|. +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 999999999865 223468899999996 3456
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.-||.|.++|+....+.... +...+++++|+.+||.+.++..+.
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~r~p~-- 137 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLDRPPF-- 137 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhccCCcc--
Confidence 66999999999877665210 012357789999999999887765
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+..+.|+|++. |....+.++||++++|+
T Consensus 138 ---~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t-Hd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 138 ---NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT-HDLELVLEYADRVVVLD 213 (235)
T ss_pred ---ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe-CcHHHHHhhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999986678888876 55678999999999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877654
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-40 Score=342.31 Aligned_cols=200 Identities=32% Similarity=0.443 Sum_probs=168.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999887 9999999998754322 4579999999888999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+.. ..+ ....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KAE------------------------IRARVRELLELVGLEGLLNRYPH-----E 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhcChh-----h
Confidence 99998864322110 000 01124568889999887777765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865578888877654 477889999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
No 47
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-40 Score=335.62 Aligned_cols=209 Identities=24% Similarity=0.360 Sum_probs=177.2
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLH 256 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~ 256 (824)
++..++|++||+++++||+++|+||||+|||||||+|+|+.++. +|+|.++|++++...+ +.-++||||....
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 34578999999999999999999999999999999999999986 9999999999987655 3569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~v 335 (824)
|+.|||+|||..++..+... +. .....+.+.+.| .|....+++-
T Consensus 90 F~~LTVeENL~~g~~~~~~~-----------~~------------------------~~~~~e~v~~lFP~Lker~~~~a 134 (237)
T COG0410 90 FPRLTVEENLLLGAYARRDK-----------EA------------------------QERDLEEVYELFPRLKERRNQRA 134 (237)
T ss_pred hhhCcHHHHHhhhhhccccc-----------cc------------------------ccccHHHHHHHChhHHHHhcCcc
Confidence 99999999999875432100 00 000134455555 3566667776
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
|+ |||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.++++.+..+.||++ +.|......+++||.+
T Consensus 135 G~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~y 208 (237)
T COG0410 135 GT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGY 208 (237)
T ss_pred cC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEE
Confidence 65 99999999999999999999999999999999999999999999999765656666 5899999999999999
Q ss_pred EEcCCeEEEecChhhHHH
Q 003389 416 LLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (824)
+|.+|+|++.|+.+++.+
T Consensus 209 vle~Griv~~G~~~eL~~ 226 (237)
T COG0410 209 VLENGRIVLSGTAAELLA 226 (237)
T ss_pred EEeCCEEEEecCHHHHhc
Confidence 999999999999998753
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-40 Score=365.30 Aligned_cols=206 Identities=26% Similarity=0.357 Sum_probs=176.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 9999999998865321 35799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... . + ....++++++.+||++..++.++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~- 139 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------A----------E--------------IKARVTELLELVGLSDKADRYPA- 139 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999998754332210 0 0 01135668899999888887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|+++|+. .++.++||++++|
T Consensus 140 ----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l 214 (343)
T PRK11153 140 ----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999875588988887654 4788899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
No 49
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-41 Score=334.05 Aligned_cols=217 Identities=23% Similarity=0.364 Sum_probs=185.6
Q ss_pred cccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEE
Q 003389 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAY 249 (824)
Q Consensus 174 ~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~y 249 (824)
.++.+++ ++++++++||+.|++||+++|+|||||||||.+.++.|+.+|+ +|+|.+||.+++..... .-+||
T Consensus 8 ~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 8 ENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred hhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCccc
Confidence 3444444 4577999999999999999999999999999999999999998 99999999999876542 35899
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
++|+...|..|||+||+.-....+.... .++ +.+...+.+|+.|+|.|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~--------~~~------------------------~~~~~l~~LL~ef~i~h 131 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDL--------KKA------------------------ERKEELDALLEEFHITH 131 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcch--------hHH------------------------HHHHHHHHHHHHhchHH
Confidence 9999999999999999987765432110 000 11224678999999999
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
+++.+-. .||||||+|+.|||||+.+|+.++||||++|.||-+..+|.+.++.+.+ .|..|+|+-|. ..|+..
T Consensus 132 lr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHN-VREtL~ 204 (243)
T COG1137 132 LRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHN-VRETLD 204 (243)
T ss_pred HhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEcccc-HHHHHh
Confidence 9998755 4999999999999999999999999999999999999999999999987 58999998654 558999
Q ss_pred hcCeEEEEcCCeEEEecChhhHHH
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|||.+++++|++..+|+++++.+
T Consensus 205 i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 205 ICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred hhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999998753
No 50
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-40 Score=366.34 Aligned_cols=229 Identities=24% Similarity=0.371 Sum_probs=195.6
Q ss_pred cCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCC
Q 003389 129 VGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGA 208 (824)
Q Consensus 129 ~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGS 208 (824)
..+..+.-.++|+|+++.+. .+++||++|||+|++||-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46677778899999988642 234599999999999999999999999
Q ss_pred cHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHh
Q 003389 209 GKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285 (824)
Q Consensus 209 GKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~ 285 (824)
||||++|+|.++++ + +|+|.+||+++++... ++.|||||||..+|.+ ||.+|+.|+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn--------------- 449 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGN--------------- 449 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCC---------------
Confidence 99999999999998 4 9999999999987643 6789999997766665 9999999972
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeE
Q 003389 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365 (824)
Q Consensus 286 ~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLl 365 (824)
|+...+++.+++...+.++. +..|++.++|.||+++.+ |||||||||++||+++++|+|++
T Consensus 450 ----------~sas~eeV~e~~k~a~~hd~--------i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 450 ----------PSASDEEVVEACKRAGLHDV--------ISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred ----------CCcCHHHHHHHHHHcCcHHH--------HHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 34445566666665554432 457889999999976554 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 366 LDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|||||.||+.|+.+|++.++... .++|+|++.|.. .+...||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999954 489999988765 4788899999999999999999999875
No 51
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-38 Score=379.68 Aligned_cols=258 Identities=26% Similarity=0.386 Sum_probs=209.4
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhc-cccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRT-DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~-~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
...+....++.++.+..|. +...- ...-..-.+.+++|+|+++.+.
T Consensus 315 ~~a~~aa~~I~~~i~~~~~-----i~~~~~~~~~~~~~~g~ief~nV~FsYP---------------------------- 361 (1228)
T KOG0055|consen 315 AKARAAAYRIFETIDRKPS-----IDPYSKGGRVLSSIKGEIEFRNVCFSYP---------------------------- 361 (1228)
T ss_pred hccccchHHHHHHhcCCCC-----CCcccccCCcccccccceEEEEEEecCC----------------------------
Confidence 4456667788888877666 21111 1112233567899999887631
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+++ +..||+|+|+.|++|+.+||+|||||||||++++|.++++|+ +|+|.+||.++.++.. +.++|.|+|+
T Consensus 362 --sRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 362 --SRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred --CCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 222 457999999999999999999999999999999999999997 9999999999987654 4789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
|.+|. .||+||+.|+ +|+...+++.+|++.++.+.. +..|++.+||
T Consensus 436 PvlF~-~tI~eNI~~G-------------------------~~dat~~~i~~a~k~ana~~f--------i~~lp~g~~T 481 (1228)
T KOG0055|consen 436 PVLFA-TTIRENIRYG-------------------------KPDATREEIEEAAKAANAHDF--------ILKLPDGYDT 481 (1228)
T ss_pred hhhhc-ccHHHHHhcC-------------------------CCcccHHHHHHHHHHccHHHH--------HHhhHHhhcc
Confidence 97665 5999999986 355556666777766554332 4568889999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+.... ||||||||++|||||+.+|+|||||||||+||+.++..+.+.|.+..+ |+|.|++.|.. ++.+.+|+
T Consensus 482 ~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRL--StIrnaD~ 556 (1228)
T KOG0055|consen 482 LVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRL--STIRNADK 556 (1228)
T ss_pred cccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeeh--hhhhccCE
Confidence 99986555 999999999999999999999999999999999999999999999875 67888776754 46677999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+||+.|++++++.
T Consensus 557 I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999985
No 52
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.5e-40 Score=363.45 Aligned_cols=207 Identities=30% Similarity=0.420 Sum_probs=178.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++.+|+||||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+||++|+..+++.+
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 129 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEF 129 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCC
Confidence 356999999999999999999999999999999999999997 999999999875422 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.+..++... .+ ....++++++.+||++..++.+++
T Consensus 130 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~ll~~~~L~~~~~~~~~~--- 172 (340)
T PRK13536 130 TVRENLLVFGRYFGMST----------RE------------------------IEAVIPSLLEFARLESKADARVSD--- 172 (340)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhCCChhh---
Confidence 99999997654433210 00 011245678899999888888764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ .|.|+|+++|+ ..++.++||+|++|++|
T Consensus 173 --LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~-l~e~~~~~d~i~il~~G 248 (340)
T PRK13536 173 --LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHF-MEEAERLCDRLCVLEAG 248 (340)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 48898888655 56889999999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|+++++..
T Consensus 249 ~i~~~g~~~~l~~ 261 (340)
T PRK13536 249 RKIAEGRPHALID 261 (340)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998764
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-40 Score=354.29 Aligned_cols=218 Identities=26% Similarity=0.388 Sum_probs=178.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999886422 2467999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMV 335 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~v 335 (824)
..+||+||+.|+....+.. +. +....++++++.+||. +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------EE------------------------EIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------HH------------------------HHHHHHHHHHHHcCCCchhhccCCc
Confidence 4679999999864332210 00 0112356789999997 5566655
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
. .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|+++|+ ..++.++||+|+
T Consensus 143 ~-----~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~drv~ 216 (287)
T PRK13637 143 F-----ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS-MEDVAKLADRII 216 (287)
T ss_pred c-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEE
Confidence 4 5999999999999999999999999999999999999999999999987558898888766 457788999999
Q ss_pred EEcCCeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 416 LLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 33455666654
No 54
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-40 Score=342.07 Aligned_cols=205 Identities=28% Similarity=0.414 Sum_probs=172.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999887 999999998764311 1357999999998999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+.....+... . +....++++++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVPG----------A------------------------ERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 9999988654322100 0 0011346788999998877877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|+ .+++.++||++++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~-~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY-MEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999987557888887665 457888999999999999
Q ss_pred EEEecChhhH
Q 003389 422 IVYQGPRDNV 431 (824)
Q Consensus 422 iv~~G~~~~~ 431 (824)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-40 Score=343.73 Aligned_cols=204 Identities=28% Similarity=0.367 Sum_probs=173.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHHG 258 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~~ 258 (824)
++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 999999999875432 1357999999999999
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+||+||+.+.....+... . + ....++.+++.+||++..++.+.
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-- 139 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------A----------E--------------IEERVLELLELVGLEDKADAYPA-- 139 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHCCChhhhhcChh--
Confidence 9999999988643222100 0 0 01124568899999887777665
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|+
T Consensus 140 ---~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~ 215 (233)
T cd03258 140 ---QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVME 215 (233)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999875578888887765 47788999999999
Q ss_pred CCeEEEecChhhH
Q 003389 419 EGQIVYQGPRDNV 431 (824)
Q Consensus 419 ~G~iv~~G~~~~~ 431 (824)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999988765
No 56
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.1e-39 Score=384.77 Aligned_cols=254 Identities=26% Similarity=0.412 Sum_probs=204.1
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
+......+|+.+++++.++ +++.... ...+..+++|+|+++.++
T Consensus 296 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~--~~~~~~~I~f~~vsf~y~----------------------------- 339 (567)
T COG1132 296 QRASAAAERLFELLDEEPE-----VEDPPDP--LKDTIGSIEFENVSFSYP----------------------------- 339 (567)
T ss_pred HHHHHHHHHHHHHHcCCcc-----ccCCCCC--CCCCCCeEEEEEEEEEcC-----------------------------
Confidence 4456677888888877555 2222221 334456699999987642
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d 254 (824)
+++++|+|+|++|+|||.+||+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|+.
T Consensus 340 ----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 340 ----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred ----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 1357999999999999999999999999999999999999997 9999999999987653 57899999988
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+|. .||+||+.++. |+...+++.+++..++.++ . +..|++.+||.
T Consensus 413 ~LF~-~TI~~NI~~g~-------------------------~~at~eei~~a~k~a~~~d------~--I~~lp~g~dt~ 458 (567)
T COG1132 413 LLFS-GTIRENIALGR-------------------------PDATDEEIEEALKLANAHE------F--IANLPDGYDTI 458 (567)
T ss_pred eeec-ccHHHHHhcCC-------------------------CCCCHHHHHHHHHHhChHH------H--HHhCcccccce
Confidence 8887 69999999872 3333345556655443222 2 33557789999
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
||+ .+..||||||||++||||++++|++|+||||||+||+.++..|.+.++++.+ ++|++++.|++ .+...||+|
T Consensus 459 vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~I 533 (567)
T COG1132 459 VGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRI 533 (567)
T ss_pred ecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEE
Confidence 994 5566999999999999999999999999999999999999999999998874 57888877766 355569999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (824)
++|++|++++.|+++++..
T Consensus 534 iVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 534 IVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999999875
No 57
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-40 Score=339.98 Aligned_cols=201 Identities=27% Similarity=0.349 Sum_probs=170.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999886 9999999998764 246799999999888999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+... . + ....++.+++.+||++..++.++ .|
T Consensus 92 e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A----------E--------------ARERAEELLELVGLSGFENAYPH-----QL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCChhhhhCCcc-----cC
Confidence 99988643322100 0 0 01134668899999887777765 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc--CCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~--~G~ 421 (824)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999998765578988887765 46788999999999 799
Q ss_pred EEEecChh
Q 003389 422 IVYQGPRD 429 (824)
Q Consensus 422 iv~~G~~~ 429 (824)
+++.++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99888753
No 58
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-39 Score=344.14 Aligned_cols=209 Identities=30% Similarity=0.439 Sum_probs=173.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999999886 9999999998754322 3579999999988889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.++....+...+ ++.. +....++.+++.+||++..++.++ .
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------PPEA-------------EIRAKVHELLKLVQLDWLADRYPA-----Q 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------CCHH-------------HHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 9999886432211000 0000 001134568899999877777665 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999875578998887765 467889999999999999
Q ss_pred EEecChhhH
Q 003389 423 VYQGPRDNV 431 (824)
Q Consensus 423 v~~G~~~~~ 431 (824)
++.|+++++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999998776
No 59
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-39 Score=342.94 Aligned_cols=214 Identities=25% Similarity=0.383 Sum_probs=173.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999999886 9999999998765332 2459999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+... ..+. +. .... + +....++++++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~-~~---~~~~--~-----------~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA-RA---RREE--R-----------EARERAEELLERVGLADLADRPAG--- 142 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc-cc---cccH--H-----------HHHHHHHHHHHHcCccchhhCChh---
Confidence 999999988653321100 0000 00 0000 0 011235678899999887777665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|++
T Consensus 143 --~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~ 218 (236)
T cd03219 143 --ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQ 218 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeC
Confidence 4999999999999999999999999999999999999999999999986 588988887665 477889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999998776
No 60
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.1e-39 Score=337.68 Aligned_cols=200 Identities=29% Similarity=0.395 Sum_probs=169.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 46999999999999999999999999999999999999887 9999999998754322 3579999999988889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+.. ..+ ....++++++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------KDE------------------------IDERVREVAELLQIEHLLDRKPK-----Q 130 (213)
T ss_pred HHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCHHHHhCChh-----h
Confidence 99998864332210 000 01134668899999888887765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++.++||++++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875578999887765 477889999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
No 61
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-39 Score=343.27 Aligned_cols=214 Identities=29% Similarity=0.375 Sum_probs=173.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999886 999999999876432 135699999999899
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.++...... ....+ ....+ . .....++.+++.+||.+..++.++
T Consensus 91 ~~~tv~~~l~~~~~~~~~-----~~~~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~- 143 (241)
T cd03256 91 ERLSVLENVLSGRLGRRS-----TWRSL------FGLFP-K--------------EEKQRALAALERVGLLDKAYQRAD- 143 (241)
T ss_pred ccCcHHHHHHhhhcccch-----hhhhh------cccCc-H--------------HHHHHHHHHHHHcCChhhhCCCcc-
Confidence 999999999875321100 00000 00000 0 001234567889999877776654
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ +++.++||++++|
T Consensus 144 ----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l 218 (241)
T cd03256 144 ----QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGL 218 (241)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999865578888887665 4778899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
No 62
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-39 Score=355.98 Aligned_cols=206 Identities=30% Similarity=0.421 Sum_probs=174.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 46999999999999999999999999999999999999887 999999998874321 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+.+...+... . + ....++.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------R----------E--------------IEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHCCChhHhcCchhh----
Confidence 9999987543322100 0 0 011245678899999888887764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++ .++.++||++++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 488988877654 47889999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
No 63
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.5e-40 Score=340.73 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999887 999999999875432 135799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... .+ ....++++++.+||++..++.++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~- 137 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------RD------------------------ANERVSAALEKVGLEGKAHALPM- 137 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhhhhCChh-
Confidence 99999999988654322100 00 01134668899999887777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ +++.++||++++|
T Consensus 138 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l 211 (216)
T TIGR00960 138 ----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTL 211 (216)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999975 478888877654 4777899999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
No 64
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=353.03 Aligned_cols=219 Identities=22% Similarity=0.335 Sum_probs=177.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~- 255 (824)
.++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 99999999987521 11357999999852
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+...||+||+.|+....+.. ..+ ....++.+++.+||. +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EED------------------------AKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCChhhhhCC
Confidence 344579999999875432211 000 011356789999996 556766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+. .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..|.|||+++|+. .++.++||+|
T Consensus 143 ~~-----~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 143 PF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 55 59999999999999999999999999999999999999999999999875688988887654 4788899999
Q ss_pred EEEcCCeEEEecChhhHH---HHHHHcCCCCCCC
Q 003389 415 ILLSEGQIVYQGPRDNVL---EFFEHMGFKCPER 445 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~ 445 (824)
++|++|++++.|+++++. ..+...|..+|..
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPET 250 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCHH
Confidence 999999999999988764 2344556665543
No 65
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.7e-39 Score=340.61 Aligned_cols=204 Identities=24% Similarity=0.378 Sum_probs=172.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999987 9999999998754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. + ....++.+++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 132 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------KK----------E--------------REEKLEELLEEFHITHLRKSKAS--- 132 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCChh---
Confidence 99999998764322110 00 0 01134668889999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.++||++++|++
T Consensus 133 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~ 208 (232)
T cd03218 133 --SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYE 208 (232)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999976 4788888876654 78899999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+.+++
T Consensus 209 G~i~~~~~~~~~ 220 (232)
T cd03218 209 GKVLAEGTPEEI 220 (232)
T ss_pred CeEEEEeCHHHh
Confidence 999999998765
No 66
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.1e-39 Score=339.26 Aligned_cols=203 Identities=29% Similarity=0.413 Sum_probs=171.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 56999999999999999999999999999999999999887 99999999987532 12356999999998888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..+..+... .+ ....++++++.+||.+..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------SE------------------------IKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999988654332110 00 01124568889999888777765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++. ++.++||++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCE
Confidence 4999999999999999999999999999999999999999999999875 578888776654 6778999999999999
Q ss_pred EEEecChhhH
Q 003389 422 IVYQGPRDNV 431 (824)
Q Consensus 422 iv~~G~~~~~ 431 (824)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988754
No 67
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-39 Score=347.30 Aligned_cols=208 Identities=23% Similarity=0.311 Sum_probs=175.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d 254 (824)
+.+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 4567999999999999999999999999999999999999987 9999999998754321 35699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+++.+||+||+.+.....+... .+ ....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------AE------------------------REERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCHhHhhCC
Confidence 99999999999988653322100 00 011345688999998888877
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEE
Confidence 76 49999999999999999999999999999999999999999999999865578988887654 4678899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987764
No 68
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-39 Score=348.96 Aligned_cols=216 Identities=26% Similarity=0.345 Sum_probs=176.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~-~~~~ 259 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 45999999999999999999999999999999999999987 9999999998764321 356999999863 4566
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.|+....+.. +. +....++++++.+||.+..++.+.
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~--- 137 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------KD------------------------EVERRVEEALKAVRMWDFRDKPPY--- 137 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCChh---
Confidence 89999998864322110 00 001135678899999888887776
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|+|+++|+ .+++.++||+|++|++
T Consensus 138 --~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~-~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 138 --HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHD-VDLAAEWADQVIVLKE 213 (274)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999864 8899888766 4467789999999999
Q ss_pred CeEEEecChhhHH--HHHHHcCCCCC
Q 003389 420 GQIVYQGPRDNVL--EFFEHMGFKCP 443 (824)
Q Consensus 420 G~iv~~G~~~~~~--~~f~~~G~~~p 443 (824)
|++++.|+++++. +.+...|+++|
T Consensus 214 G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 214 GRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 9999999987542 23444555554
No 69
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=350.67 Aligned_cols=224 Identities=25% Similarity=0.366 Sum_probs=181.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCC-CC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD-LH 256 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d-~~ 256 (824)
.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987521 1245799999986 23
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 335 (824)
+...||.||+.|+....+.. +.+ ....+.++++.+||. +..++.+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~ 142 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------KEK------------------------AEKIAAEKLEMVGLADEFWEKSP 142 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhhccCCc
Confidence 33469999999875433211 000 011356688899996 4556555
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|||+++|++ .++.++||+|+
T Consensus 143 -----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~ 215 (288)
T PRK13643 143 -----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVY 215 (288)
T ss_pred -----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 45999999999999999999999999999999999999999999999976 488998887664 57888999999
Q ss_pred EEcCCeEEEecChhhHH---HHHHHcCCCCCCCCCHHHHH
Q 003389 416 LLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~adfl 452 (824)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999998874 35667788887755554444
No 70
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.2e-39 Score=387.78 Aligned_cols=253 Identities=25% Similarity=0.324 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+..++|+.++++.++|.. . +........-.++++|+++.+..
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~-----~--~~~~~~~~~~~I~~~nvsf~Y~~--------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVD-----E--AKTDPGKLSGAIEVDRVTFRYRP--------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCcccc-----c--CcCCCCCCCceEEEEEEEEEcCC---------------------------
Confidence 4556677788888777655421 0 00001111236888898876421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.++++|+|+|++|+|||.+||+||||||||||+|+|+|+++|+ +|+|.+||+++.+..+ ++.++||+|+
T Consensus 464 -----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 464 -----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred -----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 1246999999999999999999999999999999999999997 9999999999887643 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. |++|||.++.. .+.+++.+++...+.+. . .-.|++..||
T Consensus 536 ~~lf~g-TI~eNi~~~~~--------------------------~~~e~i~~al~~a~l~~------~--i~~lp~G~dt 580 (686)
T TIGR03797 536 GRLMSG-SIFENIAGGAP--------------------------LTLDEAWEAARMAGLAE------D--IRAMPMGMHT 580 (686)
T ss_pred CccCcc-cHHHHHhcCCC--------------------------CCHHHHHHHHHHcCcHH------H--HHhccccccc
Confidence 887764 99999987521 12233344444333222 1 2246778899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++ ++|+|++.|++ ++.+.||+
T Consensus 581 ~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~ 653 (686)
T TIGR03797 581 VISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADR 653 (686)
T ss_pred cccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCE
Confidence 99964 5679999999999999999999999999999999999999999999885 46888888876 56788999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 654 Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998763
No 71
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=342.14 Aligned_cols=206 Identities=28% Similarity=0.397 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999886 9999999998754322 35799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--cccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~~ 338 (824)
||+||+.+.....+... . + ....+.++++.+||.+ ..++.+.
T Consensus 91 tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~l~l~~~~~~~~~~~-- 134 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------E----------K--------------IRERADELLALVGLDPAEFADRYPH-- 134 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCCcHHHHhcChh--
Confidence 99999988643322100 0 0 0112456888999985 5565554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++|+
T Consensus 135 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~ 210 (242)
T cd03295 135 ---ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMK 210 (242)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999865578888887765 46788999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987663
No 72
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.2e-39 Score=338.62 Aligned_cols=195 Identities=26% Similarity=0.381 Sum_probs=164.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999887 999999999876432 13579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+.....+... .+ ....++++++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------KE------------------------RRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhcChh
Confidence 999999999998654322100 00 01134668899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++. ++. .||++++
T Consensus 140 -----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~ 212 (218)
T cd03255 140 -----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE 212 (218)
T ss_pred -----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence 499999999999999999999999999999999999999999999998645789999887764 454 8999999
Q ss_pred EcCCeE
Q 003389 417 LSEGQI 422 (824)
Q Consensus 417 L~~G~i 422 (824)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.7e-39 Score=342.86 Aligned_cols=214 Identities=26% Similarity=0.334 Sum_probs=172.3
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLH 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~ 256 (824)
++++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~ 90 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc
Confidence 356999999999999999999999999999999999999886 999999998875432 24569999999989
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.++....... ...+. ...+ . .....++++++.+||.+..++.+.
T Consensus 91 ~~~~tv~~~l~~~~~~~~~~-----~~~~~------~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 91 IERLTVLENVLHGRLGYKPT-----WRSLL------GRFS-E--------------EDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred cccccHHHHHhhcccccccc-----hhhhh------cccc-H--------------HHHHHHHHHHHHcCcHhhhcCCcc
Confidence 99999999998753211000 00000 0000 0 001234668889999877776654
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++
T Consensus 145 -----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~ 218 (243)
T TIGR02315 145 -----QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVG 218 (243)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEE
Confidence 59999999999999999999999999999999999999999999999765578888877665 467789999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|++++.|+++++
T Consensus 219 l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 219 LKAGEIVFDGAPSEL 233 (243)
T ss_pred EECCEEEecCCHHHh
Confidence 999999999988764
No 74
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-39 Score=362.26 Aligned_cols=208 Identities=29% Similarity=0.450 Sum_probs=175.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
++++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+.. .+++++||+|++.+++.
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g 409 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG 409 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc
Confidence 347999999999999999999999999999999999999987 999999999987765 36899999999887765
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
|+|||+.++. |+.+.+++.+++...+ +.+.+.-++..||.+|+ .
T Consensus 410 -TireNi~l~~-------------------------~~~s~e~i~~al~~a~---------l~~~v~~p~GLdt~ige-~ 453 (559)
T COG4988 410 -TIRENILLAR-------------------------PDASDEEIIAALDQAG---------LLEFVPKPDGLDTVIGE-G 453 (559)
T ss_pred -cHHHHhhccC-------------------------CcCCHHHHHHHHHHhc---------HHHhhcCCCcccchhcc-C
Confidence 9999999862 2222233333332222 23333336788999995 6
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.++|||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|++++.|++ +....+|+|++|++
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~ 529 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDN 529 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecC
Confidence 788999999999999999999999999999999999999999999999986 58999988865 46678999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+++..|.++++.+
T Consensus 530 G~l~~~g~~~~L~~ 543 (559)
T COG4988 530 GRLVEQGTHEELSE 543 (559)
T ss_pred CceeccCCHHHHhh
Confidence 99999999998853
No 75
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-39 Score=360.92 Aligned_cols=218 Identities=21% Similarity=0.288 Sum_probs=181.1
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------- 243 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------- 243 (824)
+....+.+.+ +...+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~ 104 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVR 104 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHH
Confidence 3333343333 3346899999999999999999999999999999999999987 9999999998765322
Q ss_pred CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 244 ~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
++.++|++|+..+++.+||+||+.|.....+... .+ ....++++++
T Consensus 105 ~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~e~L~ 150 (400)
T PRK10070 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINA----------EE------------------------RREKALDALR 150 (400)
T ss_pred hCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHH
Confidence 2479999999999999999999998765432210 00 0113466899
Q ss_pred HcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 324 ILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 324 ~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+||++..++.+. .|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|+++|+
T Consensus 151 ~~gL~~~~~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd- 224 (400)
T PRK10070 151 QVGLENYAHSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD- 224 (400)
T ss_pred HcCCChhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC-
Confidence 9999887777665 5999999999999999999999999999999999999999999999976568898888765
Q ss_pred chhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 404 APETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 404 ~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..++.++||+|++|++|+++..|+++++.
T Consensus 225 ~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 45788999999999999999999988764
No 76
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-40 Score=357.49 Aligned_cols=257 Identities=24% Similarity=0.395 Sum_probs=217.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.|....=+|++.+++.+++| +.+.....++..++..+.|+|+++.++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~---------------------------- 548 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYD---------------------------- 548 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecC----------------------------
Confidence 34556668899999999988 777777777888899999999998753
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~ 253 (824)
.++++|+||||++.||+.+||+||||+||||++++|-.+++.+ +|.|++||+++.... .++.||.||||
T Consensus 549 -----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQD 620 (790)
T KOG0056|consen 549 -----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQD 620 (790)
T ss_pred -----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCc
Confidence 3467999999999999999999999999999999999999886 999999999987543 35789999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
..+|.+ |+..|+.|+ +|++..+++.+|++.++.++ +++++++.++|
T Consensus 621 tvLFNd-TI~yNIrya-------------------------k~~AsneevyaAAkAA~IHd--------rIl~fPegY~t 666 (790)
T KOG0056|consen 621 TVLFND-TILYNIRYA-------------------------KPSASNEEVYAAAKAAQIHD--------RILQFPEGYNT 666 (790)
T ss_pred ceeecc-eeeeheeec-------------------------CCCCChHHHHHHHHHhhHHH--------HHhcCchhhhh
Confidence 777765 999999886 34444444555554444333 47899999999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+||++..+ |||||||||+|||++++.|.+++|||.||+||..++.+|..+|.+++. ++|.|++-|.- ++.-.+|.
T Consensus 667 ~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRL--STivnAD~ 741 (790)
T KOG0056|consen 667 RVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRL--STIVNADL 741 (790)
T ss_pred hhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeee--hheecccE
Confidence 99987776 999999999999999999999999999999999999999999999996 56666665654 46667999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+++++|+|++.|.+++++.
T Consensus 742 ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999864
No 77
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-39 Score=348.73 Aligned_cols=217 Identities=23% Similarity=0.311 Sum_probs=179.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999987 9999999998854322 35799999986 36778
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|+....+.. +.+ ....++++++.+||++..+..++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HEE------------------------MKERVNEALELVGMQDFKEREPA--- 139 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCcc---
Confidence 89999999874332211 000 01235678999999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++..|.|+|+++|+.. ++ ..||++++|++
T Consensus 140 --~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~ 215 (279)
T PRK13650 140 --RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998755889999887754 55 57999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
|+++..|+++++.. .++..|+++|.
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCcH
Confidence 99999999987653 34555666544
No 78
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.2e-39 Score=336.11 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999987 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~ 338 (824)
+||+||+.+.....+. . + ....++.+++.+ ++++..++.+.
T Consensus 90 ~t~~~~l~~~~~~~~~------------~----------~--------------~~~~~~~~l~~~~~l~~~~~~~~~-- 131 (222)
T cd03224 90 LTVEENLLLGAYARRR------------A----------K--------------RKARLERVYELFPRLKERRKQLAG-- 131 (222)
T ss_pred CcHHHHHHHHhhhcCc------------h----------h--------------HHHHHHHHHHHHHhhhhhhhCchh--
Confidence 9999999886432210 0 0 001233456666 46666666655
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ .++.++||++++|+
T Consensus 132 ---~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 206 (222)
T cd03224 132 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLE 206 (222)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEee
Confidence 4999999999999999999999999999999999999999999999976 578888887654 47788999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|+++..|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
No 79
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.6e-39 Score=352.57 Aligned_cols=206 Identities=29% Similarity=0.446 Sum_probs=176.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++.+|+|+||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875421 246799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.+.+++++... .+ ....++.+++.+||++..++.+++
T Consensus 91 tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~--- 133 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKG----------QL------------------------LKQRVEEMIELVGLRPEQHKKIGQ--- 133 (301)
T ss_pred cHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCchHhcCchhh---
Confidence 99999998765543210 00 011346788999999888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|+++|+ .+++.++||+|++|++|
T Consensus 134 --LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~-l~~~~~~~d~i~~l~~G 208 (301)
T TIGR03522 134 --LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHI-MQEVEAICDRVIIINKG 208 (301)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999863 6888887665 45889999999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+.+++..
T Consensus 209 ~i~~~g~~~~~~~ 221 (301)
T TIGR03522 209 KIVADKKLDELSA 221 (301)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999998754
No 80
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-39 Score=338.35 Aligned_cols=201 Identities=19% Similarity=0.285 Sum_probs=168.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++..... ++.++|++|+..+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999886 9999999998765422 2569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+.....+... .+ ....+.++++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------AE------------------------INSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998643221100 00 01134568899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|++.|++. ++.. +|++++
T Consensus 145 -----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 145 -----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 499999999999999999999999999999999999999999999997645789999877654 4544 689999
Q ss_pred EcCCeEEEecCh
Q 003389 417 LSEGQIVYQGPR 428 (824)
Q Consensus 417 L~~G~iv~~G~~ 428 (824)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988763
No 81
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=334.75 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=167.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..++.++|++|+..+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999999886 9999999988754 2356799999999889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+....++... .+ ....++++++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK--------------------EE--------------ARRRIDEWLERLELSEYANKRVE-----EL 129 (210)
T ss_pred HHHHHHHHHcCCCh--------------------HH--------------HHHHHHHHHHHcCChHHHhCcHh-----hC
Confidence 99988644322100 00 01134668889999887777665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999876 478888876654 4677899999999999998
Q ss_pred Eec
Q 003389 424 YQG 426 (824)
Q Consensus 424 ~~G 426 (824)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
No 82
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.8e-39 Score=333.49 Aligned_cols=195 Identities=29% Similarity=0.429 Sum_probs=166.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-CCCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999886 99999999877532 124579999999988999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+. ....++++++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 9999886432110 01124567889999887777765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 578888887654 467789999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
No 83
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3e-39 Score=332.65 Aligned_cols=192 Identities=28% Similarity=0.342 Sum_probs=162.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCC-CCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL-HHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~-~~~~lTV 262 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 56999999999999999999999999999999999999987 9999999998754233467999999864 3456799
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+. ....++++++.+||.+..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCch-----h
Confidence 9999875321100 00124568899999888887765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ .++.++||++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976 478988887665 467789999999999997
Q ss_pred E
Q 003389 423 V 423 (824)
Q Consensus 423 v 423 (824)
|
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
No 84
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5e-39 Score=344.97 Aligned_cols=207 Identities=23% Similarity=0.353 Sum_probs=173.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 46999999999999999999999999999999999999886 999999998875432 135699999998889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||.||+.+....... ....+ ....+..+++.+||.+..++.++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~- 142 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAPL------------------------LHSTVMMKLEAVGLRGAAKLMPS- 142 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHcCChhhhhCChh-
Confidence 999999999875321100 00000 01124567889999988887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|+ ..++.++||++++|
T Consensus 143 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~-~~~~~~~~d~v~~l 217 (269)
T PRK11831 143 ----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD-VPEVLSIADHAYIV 217 (269)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC-HHHHHHhhCEEEEE
Confidence 4999999999999999999999999999999999999999999999986557888888765 45788899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
No 85
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.5e-39 Score=337.24 Aligned_cols=204 Identities=23% Similarity=0.340 Sum_probs=168.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc-----CCCCCCcceEeeCCcccCCCC-----CCceEEEEecC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCGHELNEFV-----PQRTCAYISQH 253 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l-----~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~ 253 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|++ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 46999999999999999999999999999999999999 776 999999999875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++ .+||+||+.++....+... +. + ....++++++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------KE----------E--------------LDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------HH----------H--------------HHHHHHHHHHHcCCChHHhc
Confidence 8877 7999999988654322100 00 0 01134568889999876665
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. .|+|+++|++ +++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCE
Confidence 530 2469999999999999999999999999999999999999999999999763 7888877654 477889999
Q ss_pred EEEEcCCeEEEecChhh
Q 003389 414 IILLSEGQIVYQGPRDN 430 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~ 430 (824)
+++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
No 86
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=347.99 Aligned_cols=219 Identities=21% Similarity=0.362 Sum_probs=176.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------------------CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------------------VPQ 244 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------------------~~~ 244 (824)
+++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999987 99999999876432 114
Q ss_pred ceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 245 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 245 ~~i~yv~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
+.++||+|++ .+++ .||+||+.|+....+.. .. + ....+++++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~~-------------~-----------~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------KS-------------E-----------AKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------HH-------------H-----------HHHHHHHHH
Confidence 6799999986 3454 59999998864322110 00 0 011346688
Q ss_pred HHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
+.+||+ +..++.+ ..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .+.|+|+++|
T Consensus 161 ~~~gL~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 161 NKMGLDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HHcCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 999996 4555554 45999999999999999999999999999999999999999999999875 4889888876
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChhhHH---HHHHHcCCCCCCCCC
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKG 447 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~ 447 (824)
++ .++.++||+|++|++|++++.|+++++. ..++..|+.+|....
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~ 282 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQ 282 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHH
Confidence 54 4677899999999999999999998774 345667777665433
No 87
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7.4e-39 Score=336.92 Aligned_cols=205 Identities=27% Similarity=0.398 Sum_probs=171.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC--CceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999887 9999999988754321 257999999988888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+....++.. ..+ ....++++++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RAE------------------------ARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhcCChh-----
Confidence 999998764332110 000 01124567889999887777766
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .||++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCe
Confidence 499999999999999999999999999999999999999999999998645789888877664 454 599999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
+++.|+++++.
T Consensus 210 i~~~~~~~~~~ 220 (236)
T TIGR03864 210 VLADGAAAELR 220 (236)
T ss_pred EEEeCCHHHHH
Confidence 99999987764
No 88
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-39 Score=347.15 Aligned_cols=218 Identities=28% Similarity=0.375 Sum_probs=177.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC--C---CCCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 46999999999999999999999999999999999999987 9999999998741 1 12367999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
...||+||+.+.....+.. ..+ ....++++++.+||.+..++.++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~- 140 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------EDE------------------------VRKRVDNALKRTGIEHLKDKPTH- 140 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCChhhhhCCcc-
Confidence 5679999998864322210 000 01135678899999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|++.|+. +++.++||++++|
T Consensus 141 ----~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l 215 (283)
T PRK13636 141 ----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVM 215 (283)
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 49999999999999999999999999999999999999999999999875588988887654 4677899999999
Q ss_pred cCCeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 418 SEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
++|++++.|+.+++.. .+...|.++|.
T Consensus 216 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 216 KEGRVILQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred ECCEEEEeCCHHHHhcCHHHHHHcCCCCCc
Confidence 9999999999988753 33445555544
No 89
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.2e-38 Score=384.26 Aligned_cols=258 Identities=24% Similarity=0.381 Sum_probs=202.5
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.+.....++|+.++++.++|... . ......+...-.++++|+++.++.
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~~~----~-~~~~~~~~~~~~I~~~~vsf~Y~~--------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVERPE----G-TRFLHRPRLQGEIEFRNVSFAYPG--------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCC----C-CCCCCCCCccceEEEEEEEEEeCC---------------------------
Confidence 45677788888888877655210 0 000001111236889998876421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
..+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|+
T Consensus 476 -----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 476 -----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred -----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 1245999999999999999999999999999999999999997 9999999999877543 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .|++|||.++. |+.+.+++.+++...+.+. . .-.|++..||
T Consensus 548 ~~lf~-~TI~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l~~------~--i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLFY-GTLRDNIALGA-------------------------PYADDEEILRAAELAGVTE------F--VRRHPDGLDM 593 (694)
T ss_pred hhhhh-hhHHHHHhCCC-------------------------CCCCHHHHHHHHHHcChHH------H--HHhCcccccc
Confidence 87776 49999998752 2223344444444433221 2 2256788899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.+|.+.|+++.+ ++|+|++.|++ ++.+.||+
T Consensus 594 ~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~ 668 (694)
T TIGR03375 594 QIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDR 668 (694)
T ss_pred eecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCE
Confidence 99964 566999999999999999999999999999999999999999999999864 78999988876 46789999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++++
T Consensus 669 iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 669 IIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred EEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999865
No 90
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=376.75 Aligned_cols=209 Identities=23% Similarity=0.369 Sum_probs=173.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+++ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 477999999988776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++.. ++.+.+++.+++...+. ++.+ -.|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~------------------------~~~~~~~i~~al~~~~l------~~~i--~~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYART------------------------EQYSREQIEEAARMAYA------MDFI--NKMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCC------------------------CCCCHHHHHHHHHHhCc------HHHH--HhcccccCceeCCC-C
Confidence 99999987520 01122333333333222 1122 24677889999975 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++.|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999853 68999988876 567889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998863
No 91
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-39 Score=344.49 Aligned_cols=217 Identities=25% Similarity=0.370 Sum_probs=179.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 45999999999999999999999999999999999999987 9999999998864322 35799999996 36677
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.+.....+.. .. + ....++++++.+||.+..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~--- 139 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------RE----------E--------------MVERVDQALRQVGMEDFLNREPH--- 139 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCCcc---
Confidence 89999998864332210 00 0 01235678899999988887776
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|+++|++. ++. .||++++|++
T Consensus 140 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~ 215 (279)
T PRK13635 140 --RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK 215 (279)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999998755889999887765 454 5999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
|++++.|+.+++.. .+...|+.+|.
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVPF 243 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCCh
Confidence 99999999887653 44555665543
No 92
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.2e-39 Score=333.72 Aligned_cols=198 Identities=32% Similarity=0.462 Sum_probs=167.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCCH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999887 99999999987532 124679999999988999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+....++.. .. +....++++++.+||++..++.++ .
T Consensus 96 ~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------GD------------------------ELTARLEELADRLGMEELLDRRVG-----G 136 (218)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhhhhh-----h
Confidence 99998764332210 00 001235668899999887777765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 478988887665 477889999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
No 93
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9.5e-39 Score=386.22 Aligned_cols=261 Identities=21% Similarity=0.271 Sum_probs=198.8
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCC-CCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI-EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~-~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
.++....++|+.++++.++|............... +.....++++|+++.++.
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 45567778888888877655211000000000000 111236888888876421
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
..+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.++.+... ++.++||+|
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQ 560 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEec
Confidence 1246999999999999999999999999999999999999997 9999999999876543 578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.++. .|++|||.++. |+.+.+++.+++...+.+. . .-.++...|
T Consensus 561 ~~~lf~-gTi~eNi~l~~-------------------------~~~~~~~i~~al~~~~l~~------~--i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLFE-GTVRDNLTLWD-------------------------PTIPDADLVRACKDAAIHD------V--ITSRPGGYD 606 (710)
T ss_pred CChhhh-ccHHHHhhCCC-------------------------CCCCHHHHHHHHHHhCCHH------H--HHhCcCccc
Confidence 987775 59999998741 2222334444444333221 1 224677889
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
|.+|+. ...||||||||++|||||+++|++|+||||||+||+.++.+|.+.|++ .++|+|++.|++ ++...||
T Consensus 607 t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D 679 (710)
T TIGR03796 607 AELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCD 679 (710)
T ss_pred ceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCC
Confidence 999964 567999999999999999999999999999999999999999999986 378999988876 4667899
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|++|++|++++.|+++++.+
T Consensus 680 ~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 680 EIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999864
No 94
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.2e-38 Score=333.09 Aligned_cols=203 Identities=35% Similarity=0.534 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG---KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~---~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|.++ |+ +|+|.++|+++.....++.++|++|++.+++.+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL 96 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence 579999999999999999999999999999999999998 65 999999999875433457799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHH-HHHHcCCCccccccccCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY-VLKILGLDICADTMVGDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-iL~~lgL~~~~dt~vg~~~ 339 (824)
||+||+.|+......... . .+. .....+. .++.+++++..++.++
T Consensus 97 tv~enl~~~~~~~~~~~~-----------------~-~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (226)
T cd03234 97 TVRETLTYTAILRLPRKS-----------------S-DAI-------------RKKRVEDVLLRDLALTRIGGNLVK--- 142 (226)
T ss_pred cHHHHHHHHHHhhccccc-----------------c-hHH-------------HHHHHHHHHHHhhcchhhhccccc---
Confidence 999999987543211000 0 000 0011233 7888888877666654
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|+++|++..++.++||++++|++
T Consensus 143 --~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~ 219 (226)
T cd03234 143 --GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSS 219 (226)
T ss_pred --CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999876 4789999888876688999999999999
Q ss_pred CeEEEec
Q 003389 420 GQIVYQG 426 (824)
Q Consensus 420 G~iv~~G 426 (824)
|++++.|
T Consensus 220 G~i~~~g 226 (226)
T cd03234 220 GEIVYSG 226 (226)
T ss_pred CEEEecC
Confidence 9999875
No 95
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.9e-39 Score=384.05 Aligned_cols=258 Identities=24% Similarity=0.400 Sum_probs=213.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCC--cEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLL 174 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p--~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 174 (824)
....+....++..++|..|. +... +..+...| +.+|.|+|+++.+.
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~-----i~~~-~~~~~~~~~~~G~I~~~~V~F~YP-------------------------- 998 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPT-----IDPD-STSGGKLPNVKGDIEFRNVSFAYP-------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCC-----CCCC-CCCCCccccceeEEEEeeeEeeCC--------------------------
Confidence 34466677777887777664 2111 12333333 34699999988642
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEe
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYIS 251 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~ 251 (824)
+ +...+||+|+|++|++|+.+||+|||||||||...+|-.+++|. +|+|.+||++++.... ++++|.|.
T Consensus 999 ----s-RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVs 1070 (1228)
T KOG0055|consen 999 ----T-RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVS 1070 (1228)
T ss_pred ----C-CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceec
Confidence 1 23467999999999999999999999999999999999999997 9999999999988765 58899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|+|.+|.. |++|||.|+.. +...+++++|+..++.+.. +.+|++.+
T Consensus 1071 QEP~LF~~-TIrENI~YG~~-------------------------~vs~~eIi~Aak~ANaH~F--------I~sLP~Gy 1116 (1228)
T KOG0055|consen 1071 QEPVLFNG-TIRENIAYGSE-------------------------EVSEEEIIEAAKLANAHNF--------ISSLPQGY 1116 (1228)
T ss_pred cCchhhcc-cHHHHHhccCC-------------------------CCCHHHHHHHHHHhhhHHH--------HhcCcCcc
Confidence 99999876 99999999721 1234567777777776664 56899999
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
||.||++. ..||||||||++|||||++||+||||||.||+||++++.-+.+.|.+... |+|+|++-|.. .+.+.|
T Consensus 1117 DT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRL--STIqna 1191 (1228)
T KOG0055|consen 1117 DTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRL--STIQNA 1191 (1228)
T ss_pred cCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecch--hhhhcC
Confidence 99999754 45999999999999999999999999999999999999999999999874 78888876755 588999
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~ 433 (824)
|.|.|+++|+|+++|++++++.
T Consensus 1192 D~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1192 DVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred CEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999975
No 96
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=6.5e-39 Score=332.05 Aligned_cols=194 Identities=28% Similarity=0.389 Sum_probs=163.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999886 999999999876432 235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... . + ....++++++.+||++..++.+.
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~- 136 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------R----------E--------------IQRRVGAALRQVGLEHKADAFPE- 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCChhhhhCChh-
Confidence 89999999988643322100 0 0 01134668889999877777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++.|++ .++.++||++++|
T Consensus 137 ----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l 210 (214)
T TIGR02673 137 ----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIIL 210 (214)
T ss_pred ----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEe
Confidence 4999999999999999999999999999999999999999999999875 478888887665 4788899999999
Q ss_pred cCCe
Q 003389 418 SEGQ 421 (824)
Q Consensus 418 ~~G~ 421 (824)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
No 97
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=6.5e-39 Score=331.88 Aligned_cols=195 Identities=25% Similarity=0.362 Sum_probs=164.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999887 999999999875432 235699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... . +....++++++.+||++..++.++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 135 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------R------------------------EIRKRVPAALELVGLSHKHRALPA- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHhhCChh-
Confidence 99999999988653322100 0 001134568889999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ .++.++||++++|
T Consensus 136 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l 209 (214)
T cd03292 136 ----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIAL 209 (214)
T ss_pred ----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999875 478888887665 4677889999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
No 98
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-39 Score=348.61 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC-----------------------
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------------------- 240 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----------------------- 240 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|++...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999987 9999999876421
Q ss_pred ----CCCCceEEEEecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchh
Q 003389 241 ----FVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (824)
Q Consensus 241 ----~~~~~~i~yv~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (824)
...++.+|||+|++ ..+...||+||+.|+....+... . + ..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------~----------~--------------~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------E----------E--------------AK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------H----------H--------------HH
Confidence 01135799999985 34456799999998754332210 0 0 01
Q ss_pred hhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 316 LVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 316 ~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
..+.++++.+||+ +..++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356788999996 56676655 5999999999999999999999999999999999999999999999975 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH---HHHHHcCCCCCC
Q 003389 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPE 444 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~ 444 (824)
|+|++.|+ .+++.++||+|++|++|++++.|+++++. +.....|...|.
T Consensus 217 tiiivtHd-~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 268 (305)
T PRK13651 217 TIILVTHD-LDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPK 268 (305)
T ss_pred EEEEEeeC-HHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCCh
Confidence 98887655 55788999999999999999999998875 234445555454
No 99
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.6e-39 Score=359.53 Aligned_cols=210 Identities=24% Similarity=0.396 Sum_probs=176.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|+||.|++||+++|+||||||||||||+|+|+++|. +|+|.++|+++..... ++.++||+|+..+++.
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 356999999999999999999999999999999999999987 9999999998765332 4679999999998899
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++...+... . . ... .+....++++++.+||.+..++.+.
T Consensus 92 ~tv~e~v~~~~~~~~~~--~------~--------~~~--------------~~~~~~v~~~le~vgl~~~~~~~~~--- 138 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSR--F------D--------TWT--------------ETDRAAVERAMERTGVAQFADRPVT--- 138 (402)
T ss_pred CCHHHHHHhccchhccc--c------c--------CCC--------------HHHHHHHHHHHHHcCCchhhcCChh---
Confidence 99999998864211000 0 0 000 0011246778999999988887765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||.|||+|+.+|++|||||||+|||+.++.++++.|+++++ .+.|+|+++|+ .+++.++||++++|++
T Consensus 139 --~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~ 214 (402)
T PRK09536 139 --SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLAD 214 (402)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999986 57888887655 5688899999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 215 G~iv~~G~~~ev~ 227 (402)
T PRK09536 215 GRVRAAGPPADVL 227 (402)
T ss_pred CEEEEecCHHHHh
Confidence 9999999998753
No 100
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=342.41 Aligned_cols=206 Identities=25% Similarity=0.366 Sum_probs=172.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 45999999999999999999999999999999999999987 999999999875422 1356899999863 3446
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.+.....+.. .. .....++++++.+||.+..++.+.
T Consensus 94 ~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (277)
T PRK13652 94 PTVEQDIAFGPINLGLD----------EE------------------------TVAHRVSSALHMLGLEELRDRVPH--- 136 (277)
T ss_pred ccHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCcc---
Confidence 89999998764322110 00 001135678899999888887765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.+.||++++|++
T Consensus 137 --~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~ 213 (277)
T PRK13652 137 --HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDK 213 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999875578888887664 477889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (277)
T PRK13652 214 GRIVAYGTVEEIF 226 (277)
T ss_pred CeEEEECCHHHHh
Confidence 9999999998875
No 101
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1e-38 Score=338.43 Aligned_cols=204 Identities=23% Similarity=0.315 Sum_probs=170.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----------CCCceEEEEec
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----------VPQRTCAYISQ 252 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----------~~~~~i~yv~Q 252 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 46999999999999999999999999999999999999886 99999999887532 12357999999
Q ss_pred CCCCCCCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 253 HDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
++.+++.+||+||+.++... ++.. .. +....+..+++.+||++..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEP----------KE------------------------EATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCcchh
Confidence 99889999999999875321 1100 00 0011345678899998777
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++|
T Consensus 139 ~~~~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~ 211 (250)
T PRK11264 139 TSYPR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVA 211 (250)
T ss_pred hCChh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhc
Confidence 76655 5999999999999999999999999999999999999999999999976 478888876654 5788899
Q ss_pred CeEEEEcCCeEEEecChhhH
Q 003389 412 DDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~ 431 (824)
|++++|++|++++.|+.+++
T Consensus 212 d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999999999998776
No 102
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-38 Score=351.04 Aligned_cols=208 Identities=21% Similarity=0.278 Sum_probs=173.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~ 255 (824)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999886 999999999886542 135799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
++|.+||.||+.+..+....+ +.+.+ ....+.++++.+||. ...++.
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~--------~~~~~------------------------~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPK--------LSRQE------------------------VKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccC--------CCHHH------------------------HHHHHHHHHHHcCCChHHhcCC
Confidence 788999999998865432100 00000 012345688999994 455655
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+ +.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+++| +...+.++||+|
T Consensus 159 p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTH-dl~~~~~~~dri 232 (331)
T PRK15079 159 P-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH-DLAVVKHISDRV 232 (331)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEE
Confidence 5 4599999999999999999999999999999999999999999999998766888888765 455788899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998774
No 103
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-38 Score=336.24 Aligned_cols=205 Identities=20% Similarity=0.328 Sum_probs=172.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~~ 258 (824)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999887 999999999875421 1357999999998899
Q ss_pred CCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.+... ..+.. .. + ....+.++++.+||++..+..+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~~~~- 135 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------KE----------E--------------AEKQARELLAKVGLAERAHHYPS- 135 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCChHHHhcChh-
Confidence 9999999987532 11110 00 0 01134668889999877776665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++++ .++|+|+++|++ +++.++||++++|
T Consensus 136 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 209 (240)
T PRK09493 136 ----ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFI 209 (240)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999875 478888887665 4677899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988763
No 104
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.6e-38 Score=331.92 Aligned_cols=201 Identities=27% Similarity=0.345 Sum_probs=164.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--CC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--LH 256 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~~ 256 (824)
++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 999999999876432 235799999997 46
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 335 (824)
++.+||+||+.+.....+... .+ +. .....+++++.++|. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~----------~~-----------~~-----------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLS----------KK-----------EA-----------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCc----------HH-----------HH-----------HHHHHHHHHHHCCCChhHhhCCc
Confidence 678999999988643321100 00 00 001124577888985 5566665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++.++||+++
T Consensus 144 ~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~ 217 (228)
T cd03257 144 H-----ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVA 217 (228)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 5 49999999999999999999999999999999999999999999999865478988887765 46777999999
Q ss_pred EEcCCeEEEec
Q 003389 416 LLSEGQIVYQG 426 (824)
Q Consensus 416 lL~~G~iv~~G 426 (824)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
No 105
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.3e-38 Score=355.18 Aligned_cols=209 Identities=22% Similarity=0.300 Sum_probs=177.8
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc----ccCCCCC-------CceEEE
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----ELNEFVP-------QRTCAY 249 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~----~~~~~~~-------~~~i~y 249 (824)
.+...+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+ ++..... ++.++|
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 34567999999999999999999999999999999999999987 999999996 3332211 257999
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+|+..+++.+||+||+.|+...++... .+ ....++++++.+||++
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~------------------------~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPE----------AE------------------------RRKRVDEQLELVGLAQ 156 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCch
Confidence 9999999999999999999764433210 00 0123567899999998
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..|+.+++ |||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|+++|+ ..++.+
T Consensus 157 ~~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd-l~e~~~ 230 (382)
T TIGR03415 157 WADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD-LDEALK 230 (382)
T ss_pred hhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHH
Confidence 88877764 999999999999999999999999999999999999999999999987668899988765 557889
Q ss_pred hcCeEEEEcCCeEEEecChhhHH
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
+||+|++|++|+++..|+++++.
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998874
No 106
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.2e-38 Score=382.87 Aligned_cols=257 Identities=25% Similarity=0.332 Sum_probs=199.1
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+..++|+.++++.++|.... ......+...-.++++|+++.++
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~~~~-----~~~~~~~~~~~~I~~~~vsf~y~---------------------------- 484 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEFINK-----KKRTELNNLNGDIVINDVSYSYG---------------------------- 484 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCccccc-----ccccCCCCCCCcEEEEEEEEEcC----------------------------
Confidence 355667788888887766552100 00011111223688888887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.++++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||.++.+... ++.++||+|+
T Consensus 485 -----~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 485 -----YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred -----CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 1246999999999999999999999999999999999999997 9999999999876543 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. ||+|||.++.. |+.+.+++.+++...+.++ . +..++...||
T Consensus 557 ~~lf~g-TI~eNi~l~~~------------------------~~~~~~~i~~a~~~a~l~~------~--i~~lp~gldt 603 (708)
T TIGR01193 557 PYIFSG-SILENLLLGAK------------------------ENVSQDEIWAACEIAEIKD------D--IENMPLGYQT 603 (708)
T ss_pred ceehhH-HHHHHHhccCC------------------------CCCCHHHHHHHHHHhCCHH------H--HHhcccccCc
Confidence 887765 99999988521 1222233444444333222 2 2256778899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ ....||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++ .++|+|++.|++ ++.+.||+
T Consensus 604 ~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~ 677 (708)
T TIGR01193 604 ELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDK 677 (708)
T ss_pred EecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCE
Confidence 9986 45679999999999999999999999999999999999999999999985 368998888876 46788999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|++++.|+++++.+
T Consensus 678 i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 678 IIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
No 107
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-38 Score=341.20 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCC-CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~-~~~ 258 (824)
+.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 45999999999999999999999999999999999999886 999999999875432 1356999999865 466
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+||.||+.|.....+.. +.+ ....++++++.+||.+..++.++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~-- 135 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------PIE------------------------IRKRVDRALAEIGLEKYRHRSPK-- 135 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHHHhcCCcc--
Confidence 789999998865332210 000 01135668899999888887765
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|++. ++ ..||++++|+
T Consensus 136 ---~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~ 209 (274)
T PRK13644 136 ---TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMD 209 (274)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999975 4889999877654 55 5699999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
No 108
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-38 Score=343.47 Aligned_cols=205 Identities=20% Similarity=0.296 Sum_probs=170.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCC--
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHD-- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d-- 254 (824)
+++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 999999999875321 245799999985
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
.+++ .||.||+.|+....+.. .. + ....++++++.+||. +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD----------E--------------VKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhC
Confidence 3444 59999999864322110 00 0 011356688999996 56666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..|.|+|+++|+. +++.++||+
T Consensus 142 ~~~-----~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dr 215 (286)
T PRK13646 142 SPF-----QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADE 215 (286)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCE
Confidence 654 59999999999999999999999999999999999999999999999765688998887654 467889999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
No 109
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.2e-38 Score=331.71 Aligned_cols=196 Identities=21% Similarity=0.342 Sum_probs=163.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++|+++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999887 9999999998754321 2569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+........ ..+ ....+.++++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VKE------------------------AKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhhCChh
Confidence 88999999998864322110 000 01124568889999877776665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++|++. ++ +.+|++++
T Consensus 141 -----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 -----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 599999999999999999999999999999999999999999999998655789999887764 45 45899999
Q ss_pred EcCCeEE
Q 003389 417 LSEGQIV 423 (824)
Q Consensus 417 L~~G~iv 423 (824)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
No 110
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=338.63 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=169.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 46999999999999999999999999999999999999887 99999999987542 34589999999889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+.. ..+ ....+.++++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------KMQ------------------------RLEIAHQMLKKVGLEGAEKRYIW-----QL 129 (255)
T ss_pred HHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCChhHhhCChh-----hC
Confidence 9998764322110 000 01134668899999877776665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc--CCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~--~G~ 421 (824)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999998654578888877654 47888999999998 599
Q ss_pred EEEecChh
Q 003389 422 IVYQGPRD 429 (824)
Q Consensus 422 iv~~G~~~ 429 (824)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988754
No 111
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.7e-38 Score=332.59 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=168.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++|++|+..+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999987 9999999988754322 3569999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC-CCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~ 338 (824)
+||+||+.++....+.. . ....+.+++.++ +.+..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~-- 130 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGG-- 130 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChh--
Confidence 99999998864322110 0 001234556665 4555565554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|+++|++ +++.++||++++|+
T Consensus 131 ---~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 131 ---DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVME 206 (230)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999999864578888887664 47888999999999
Q ss_pred CCeEEEecChhhH
Q 003389 419 EGQIVYQGPRDNV 431 (824)
Q Consensus 419 ~G~iv~~G~~~~~ 431 (824)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998776
No 112
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-39 Score=354.89 Aligned_cols=208 Identities=26% Similarity=0.415 Sum_probs=175.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|+|+++++||.+||+|+||||||||+++|+|-++|+ +|+|++||.++..... ++.+++++|. .|+..-
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr-~hlF~~ 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQR-VHLFSG 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccc-hHHHHH
Confidence 46999999999999999999999999999999999999998 9999999999877655 4678999996 455556
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|+|+||.++ +|+.+.++.+++....+.++ . ..+.++..||.+|+ .+
T Consensus 427 Tlr~NL~lA-------------------------~~~AsDEel~~aL~qvgL~~------l--~~~~p~gl~t~lge-~G 472 (573)
T COG4987 427 TLRDNLRLA-------------------------NPDASDEELWAALQQVGLEK------L--LESAPDGLNTWLGE-GG 472 (573)
T ss_pred HHHHHHhhc-------------------------CCCCCHHHHHHHHHHcCHHH------H--HHhChhhhhchhcc-CC
Confidence 999999876 35555555555544433222 1 22445677889985 56
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|++++++++|||||.|||+.|+.++++.|.+.++ ++|+++++|+-. -.+.||+|++|++|
T Consensus 473 ~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~drIivl~~G 548 (573)
T COG4987 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMDRIIVLDNG 548 (573)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcCEEEEEECC
Confidence 77999999999999999999999999999999999999999999998775 899999988765 34679999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|.++++.+
T Consensus 549 kiie~G~~~~Ll~ 561 (573)
T COG4987 549 KIIEEGTHAELLA 561 (573)
T ss_pred eeeecCCHHhhhc
Confidence 9999999998874
No 113
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.4e-38 Score=370.65 Aligned_cols=207 Identities=26% Similarity=0.445 Sum_probs=171.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|++||+++.+... ++.++||+|++.+++ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 35999999999999999999999999999999999999997 9999999999876543 467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++. |+.+.+++.+++...+.++ . .-. ++..||.+|+. .
T Consensus 429 ti~~Ni~~~~-------------------------~~~~~~~i~~al~~~~l~~------~--i~~-p~GldT~vge~-g 473 (574)
T PRK11160 429 TLRDNLLLAA-------------------------PNASDEALIEVLQQVGLEK------L--LED-DKGLNAWLGEG-G 473 (574)
T ss_pred cHHHHhhcCC-------------------------CccCHHHHHHHHHHcCCHH------H--HcC-ccccCchhcCC-C
Confidence 9999998852 1111222333332222111 1 123 67789999964 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+++|++|+|||||++||+.++..|.+.|+++.+ ++|+|++.|++. +...||+|++|++|
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~--~~~~~d~i~~l~~G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLT--GLEQFDRICVMDNG 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChh--HHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999999863 789999888874 45679999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 550 ~i~~~g~~~~l~~ 562 (574)
T PRK11160 550 QIIEQGTHQELLA 562 (574)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999998764
No 114
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=339.95 Aligned_cols=216 Identities=27% Similarity=0.391 Sum_probs=175.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--C---CCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V---PQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~---~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++... . .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 45999999999999999999999999999999999999887 99999999987421 1 1357999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
..+||.||+.+.....+.. +.+ ....+..+++.+||.+..++.++
T Consensus 92 ~~~tv~e~i~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~- 136 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGLS----------KEE------------------------VEKRVKEALKAVGMEGFENKPPH- 136 (275)
T ss_pred ccccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCchhhcCChh-
Confidence 4579999998753211110 000 01134568899999888887766
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||++++|
T Consensus 137 ----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~-~~~~~~~~d~i~~l 210 (275)
T PRK13639 137 ----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHD-VDLVPVYADKVYVM 210 (275)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999976 48888888765 44778899999999
Q ss_pred cCCeEEEecChhhHH---HHHHHcCCCCC
Q 003389 418 SEGQIVYQGPRDNVL---EFFEHMGFKCP 443 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~---~~f~~~G~~~p 443 (824)
++|++++.|+++++. ...+..|++.|
T Consensus 211 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 211 SDGKIIKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred ECCEEEEeCCHHHHhcChHHHHhcCCCCC
Confidence 999999999998874 23444555443
No 115
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-38 Score=336.04 Aligned_cols=205 Identities=26% Similarity=0.329 Sum_probs=171.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 46999999999999999999999999999999999999987 999999999875432 2467999999963 6777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. +....++++++.+||.+..++.++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 141 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------PK------------------------KMKDIIDDLAKKVGMEDYLDKEPQ--- 141 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCCcc---
Confidence 89999998864321110 00 001135668899999887787765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..||++++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~ 217 (271)
T PRK13632 142 --NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE 217 (271)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999997644589999888765 44 47999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987764
No 116
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=334.45 Aligned_cols=206 Identities=21% Similarity=0.355 Sum_probs=172.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999887 9999999998754322 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.||+.+..+..... ... +....++++++.+||++..++.++
T Consensus 93 ~tv~enl~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 136 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDL---------SAE------------------------QREDRANELMEEFHIEHLRDSMGQ--- 136 (241)
T ss_pred CcHHHHHhhhhhccccc---------CHH------------------------HHHHHHHHHHHHcCCHHHhhcchh---
Confidence 99999998764321100 000 001234668889999876666654
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++
T Consensus 137 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 137 --SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQ 212 (241)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeC
Confidence 5999999999999999999999999999999999999999999999875 478988887765 478889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987763
No 117
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=341.04 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=176.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCC-CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~-~~~ 258 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 999999999875421 2467999999864 233
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
..||.||+.|.....+.. .. + ....++++++.+||++..++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------PE----------E--------------IRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------HH----------H--------------HHHHHHHHHHHCCCHhHhhCCcc--
Confidence 469999998875432210 00 0 01135678899999988888776
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. ||++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEE
Confidence 499999999999999999999999999999999999999999999997655889999887765 4544 99999999
Q ss_pred CCeEEEecChhhHHH---HHHHcCCCCCC
Q 003389 419 EGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~---~f~~~G~~~p~ 444 (824)
+|+++++|+++++.. .+...+++.|.
T Consensus 219 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 219 SGKVVMEGTPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred CCEEEEecCHHHHhcChHHHHhcCCCCCc
Confidence 999999999988753 23344555443
No 118
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.9e-38 Score=330.69 Aligned_cols=196 Identities=24% Similarity=0.314 Sum_probs=164.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999887 999999999875432 135799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... .+ ....++.+++.+||.+..++.++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~- 136 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG--------------------DD--------------IRRRVSAALDKVGLLDKAKNFPI- 136 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH--------------------HH--------------HHHHHHHHHHHcCChhhhhCCch-
Confidence 89999999988643322100 00 01124567889999877776655
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++...||++++|
T Consensus 137 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 210 (222)
T PRK10908 137 ----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTL 210 (222)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999976 478888877654 4677889999999
Q ss_pred cCCeEE
Q 003389 418 SEGQIV 423 (824)
Q Consensus 418 ~~G~iv 423 (824)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
No 119
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.8e-36 Score=386.65 Aligned_cols=219 Identities=24% Similarity=0.328 Sum_probs=184.5
Q ss_pred hhcccccCcc-cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEE
Q 003389 172 GLLHLVPSKK-RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCA 248 (824)
Q Consensus 172 ~~~~~~~~~~-~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~ 248 (824)
++.++.+.+. +++.+|+|+|+.+++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+|
T Consensus 930 ~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 930 CVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred EEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEE
Confidence 3444444442 2467999999999999999999999999999999999999997 999999999875321 246799
Q ss_pred EEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 249 yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
|++|++.+++.+||+|++.|.++.++.... + ....++++|+.+||+
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~--------------------~--------------~~~~v~~lL~~vgL~ 1052 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWE--------------------E--------------AQLEMEAMLEDTGLH 1052 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHH--------------------H--------------HHHHHHHHHHHcCCc
Confidence 999999999999999999998765543100 0 012356789999999
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
+..|+.+++ |||||||||+||+||+++|++|+|||||+|||+.++..+.+.|+++. .|+|+|+++|+ .+++.
T Consensus 1053 ~~~~~~~~~-----LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHd-mdea~ 1124 (2272)
T TIGR01257 1053 HKRNEEAQD-----LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHH-MDEAD 1124 (2272)
T ss_pred hhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECC-HHHHH
Confidence 888887764 99999999999999999999999999999999999999999999994 38898888765 55888
Q ss_pred hhcCeEEEEcCCeEEEecChhhHHHHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVLEFF 435 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~~~f 435 (824)
.+||||++|++|+++..|+++.+.+-|
T Consensus 1125 ~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1125 LLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 899999999999999999999887655
No 120
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.6e-38 Score=370.98 Aligned_cols=207 Identities=24% Similarity=0.304 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+|||.++|+|+||||||||+|+|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 35999999999999999999999999999999999999997 9999999999876543 5789999999888876
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++.. .+.+++.+++...+. ++.++ .|++..||.+|+ ..
T Consensus 430 Ti~~NI~~~~~--------------------------~~d~~i~~a~~~~gl------~~~i~--~lp~Gldt~i~e-~g 474 (592)
T PRK10790 430 TFLANVTLGRD--------------------------ISEEQVWQALETVQL------AELAR--SLPDGLYTPLGE-QG 474 (592)
T ss_pred hHHHHHHhCCC--------------------------CCHHHHHHHHHHcCc------HHHHH--hccccccccccC-CC
Confidence 99999988621 011222233322221 11222 356778999986 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||||+.+|++|+||||||+||+.++.+|.+.|+++.+ ++|+|++.|++ +....||+|++|++|
T Consensus 475 ~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G 550 (592)
T PRK10790 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRG 550 (592)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 68999988887 567789999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++..|+++++.+
T Consensus 551 ~i~~~G~~~~L~~ 563 (592)
T PRK10790 551 QAVEQGTHQQLLA 563 (592)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998863
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=328.74 Aligned_cols=197 Identities=32% Similarity=0.470 Sum_probs=165.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|++|++| +++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 46999999999999 99999999999999999999999987 999999998875422 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+.....+.. +. + ....++.+++.+||++..++.++
T Consensus 89 v~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~----- 129 (211)
T cd03264 89 VREFLDYIAWLKGIP----------SK----------E--------------VKARVDEVLELVNLGDRAKKKIG----- 129 (211)
T ss_pred HHHHHHHHHHHhCCC----------HH----------H--------------HHHHHHHHHHHCCCHHHHhCchh-----
Confidence 999998864332210 00 0 01134668889999887777765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|+ ..++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~-~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHI-VEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCC-HHHHHHhCCEEEEEECCE
Confidence 4999999999999999999999999999999999999999999999975 4787777655 446778999999999999
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
No 122
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-38 Score=337.75 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=176.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 35899999999999999999999999999999999999987 999999999875432 2457999999974 6777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||++|+.|.....+... . + ....++.+++.+||.+..++.++
T Consensus 99 ~~v~~~~~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 141 (269)
T PRK13648 99 SIVKYDVAFGLENHAVPY----------D----------E--------------MHRRVSEALKQVDMLERADYEPN--- 141 (269)
T ss_pred ccHHHHHHhhHHhcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhhCCcc---
Confidence 899999988643221100 0 0 01124567899999887776655
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. ||++++|++
T Consensus 142 --~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~ 217 (269)
T PRK13648 142 --ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK 217 (269)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC
Confidence 599999999999999999999999999999999999999999999997655789999887764 5554 999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (824)
|++++.|+++++.+ .+...|+++|
T Consensus 218 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 218 GTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred CEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 99999999887642 3444555555
No 123
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-37 Score=343.32 Aligned_cols=213 Identities=21% Similarity=0.264 Sum_probs=173.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCC--
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD-- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d-- 254 (824)
..+|+||||+|++||+++|+|+||||||||+++|+|+++|+...+|+|.|+|+++..... .+.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998742348999999998865421 24799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+.+.+||.+++.+....... ..+.+ ....+.++|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~~~~------------------------~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MSKAE------------------------AFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CCHHH------------------------HHHHHHHHHHHcCCCChHHH-
Confidence 678999999999775432210 00000 01234667889999754322
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
. +..++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.++.+.|+|+++|+ ...+.++||+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD-LGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC-HHHHHHhCCEE
Confidence 2 245677999999999999999999999999999999999999999999999987668888887665 44777899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|+|++.|+++++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998874
No 124
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=336.94 Aligned_cols=206 Identities=31% Similarity=0.472 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 46999999999999999999999999999999999999887 9999999988754321 35699999998888889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.....+.. .. +....++.+++.+||.+..++.++
T Consensus 92 tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS----------RA------------------------EDDALVAAALAQVDLAHLAGRDYP---- 133 (258)
T ss_pred CHHHHHHhhhcccCCC----------cH------------------------HHHHHHHHHHHHcCCHhHhcCCcc----
Confidence 9999998864221100 00 001124568889999877777765
Q ss_pred CCCCHHHHHHHHHHHHHH------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.++||+|
T Consensus 134 -~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i 211 (258)
T PRK13548 134 -QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD-LNLAARYADRI 211 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHhcCEE
Confidence 49999999999999999 59999999999999999999999999999984457888888765 44778899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987654
No 125
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=337.32 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=167.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~ 99 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVI 99 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHH
Confidence 45999999999999999999999999999999999999987 9999999987643 246799999999888989999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.... . . ...++.+++.+||.+..+..++ .|
T Consensus 100 enl~~~~~~-----------~--~---------------------------~~~~~~~l~~~gl~~~~~~~~~-----~L 134 (257)
T PRK11247 100 DNVGLGLKG-----------Q--W---------------------------RDAALQALAAVGLADRANEWPA-----AL 134 (257)
T ss_pred HHHHhcccc-----------h--H---------------------------HHHHHHHHHHcCChhHhcCChh-----hC
Confidence 999874210 0 0 0123567889999877776665 59
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.+..+.|+|++.|++. ++.++||+|++|++|+++
T Consensus 135 SgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~ 213 (257)
T PRK11247 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIG 213 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997655789888776654 677899999999999999
Q ss_pred EecChh
Q 003389 424 YQGPRD 429 (824)
Q Consensus 424 ~~G~~~ 429 (824)
++|+.+
T Consensus 214 ~~~~~~ 219 (257)
T PRK11247 214 LDLTVD 219 (257)
T ss_pred eecccc
Confidence 988754
No 126
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.6e-38 Score=378.21 Aligned_cols=206 Identities=25% Similarity=0.398 Sum_probs=169.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+|||.++|+||||||||||+++|+|+++|+ +|+|.+||+++++... ++.++||+|++.++. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 478999999987775 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++. ++.+.+++.+++...+.++ .++ .|++..||.+|+. .
T Consensus 570 TIreNI~~g~-------------------------~~~~~e~i~~al~~a~l~~------~i~--~lp~GldT~ige~-G 615 (711)
T TIGR00958 570 SVRENIAYGL-------------------------TDTPDEEIMAAAKAANAHD------FIM--EFPNGYDTEVGEK-G 615 (711)
T ss_pred CHHHHHhcCC-------------------------CCCCHHHHHHHHHHcCCHH------HHH--hCCCccCCcccCC-C
Confidence 9999998862 1112233334433333221 222 4567789999964 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+|+++|++|+||||||+||+.++..|.+ ... ..++|+|++.|++ ++.+.||+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999988 222 2478999988876 467789999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999998864
No 127
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=351.70 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=176.6
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~~~~~lT 261 (824)
|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999987 99999999886431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+. . ....++++++.+||++..++.++
T Consensus 93 v~enl~~~~~~---------------~-------------------------~~~~~~~~l~~~gl~~~~~~~~~----- 127 (352)
T PRK11144 93 VRGNLRYGMAK---------------S-------------------------MVAQFDKIVALLGIEPLLDRYPG----- 127 (352)
T ss_pred HHHHHHhhhhh---------------h-------------------------hHHHHHHHHHHcCCchhhhCCcc-----
Confidence 99999885310 0 00124668899999888887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++.++||++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 49999999999999999999999999999999999999999999999876578888877654 57889999999999999
Q ss_pred EEEecChhhHHHHHHHcCCCCCCCCCHHHHH
Q 003389 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (824)
Q Consensus 422 iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl 452 (824)
++..|+++++. ..|....+|+|+
T Consensus 207 i~~~g~~~~i~--------~~p~~~~~~~~~ 229 (352)
T PRK11144 207 VKAFGPLEEVW--------ASSAMRPWLPKE 229 (352)
T ss_pred EEEecCHHHHH--------hCcchhhhhccc
Confidence 99999998874 345555566654
No 128
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-38 Score=333.10 Aligned_cols=203 Identities=25% Similarity=0.389 Sum_probs=167.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 46999999999999999999999999999999999999887 999999999876532 13569999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~ 338 (824)
+||.||+.++...... .+ . ...++.+++.+ ++.+..++.+.
T Consensus 95 ~tv~~~l~~~~~~~~~------------~~----------~--------------~~~~~~~l~~~~~l~~~~~~~~~-- 136 (237)
T PRK11614 95 MTVEENLAMGGFFAER------------DQ----------F--------------QERIKWVYELFPRLHERRIQRAG-- 136 (237)
T ss_pred CcHHHHHHHhhhccCh------------hH----------H--------------HHHHHHHHHHHHHHHHHHhCchh--
Confidence 9999999875321100 00 0 00123455555 46555555444
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 137 ---~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 211 (237)
T PRK11614 137 ---TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLE 211 (237)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEe
Confidence 5999999999999999999999999999999999999999999999876 488988877654 57889999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988763
No 129
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-38 Score=341.73 Aligned_cols=205 Identities=22% Similarity=0.323 Sum_probs=169.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~- 255 (824)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999987 99999999987532 11356999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+..+||.||+.|+....+.. +.+ ....++++++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------EDE------------------------AKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998864322110 000 011356788999996 566776
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|+ ..++.++||++
T Consensus 143 ~~-----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~-~~~~~~~~d~v 215 (287)
T PRK13641 143 PF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHN-MDDVAEYADDV 215 (287)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEE
Confidence 65 4999999999999999999999999999999999999999999999975 48888887654 55788999999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 130
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-38 Score=335.42 Aligned_cols=221 Identities=22% Similarity=0.294 Sum_probs=173.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 9999999998764321 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++....... +......... ...+. + .+....++.+++.+||.+..++.++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~~---~~~~~-~------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKTP---AFRRA-E------------SEALDRAATWLERVGLLEHANRQAG--- 152 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhcccc---ccccc-h------------hHHHHHHHHHHHhCChhhhhhCChh---
Confidence 99999999864311000 0000000000 00000 0 0011235667889999877777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|+++|++ .++.++||++++|++
T Consensus 153 --~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 153 --NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999765578888887654 478899999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987753
No 131
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.2e-38 Score=332.18 Aligned_cols=211 Identities=26% Similarity=0.370 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999887 9999999988754321 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+........ . ..+. ....+ .....++++++.+|+++..++.++
T Consensus 92 ~tv~~nl~~~~~~~~~~--~---~~~~--------~~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (242)
T TIGR03411 92 LTVFENLELALPRDKSV--F---ASLF--------FRLSA-------------EEKDRIEEVLETIGLADEADRLAG--- 142 (242)
T ss_pred CCHHHHHHHhhhccccc--c---cccc--------cccHH-------------HHHHHHHHHHHHcCCchhhcCChh---
Confidence 99999998864311000 0 0000 00000 011235678899999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|+++|++ .++.++||++++|++
T Consensus 143 --~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 143 --LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQ 217 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999975 57888887654 478889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|+++..|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998765
No 132
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.1e-38 Score=329.33 Aligned_cols=197 Identities=24% Similarity=0.344 Sum_probs=165.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLHH 257 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~~ 257 (824)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999999887 9999999998764322 24699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||.||+.+.....+.. . .+ ....+.++++.+||.+..++.++
T Consensus 101 ~~~tv~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~- 145 (228)
T PRK10584 101 PTLNALENVELPALLRGES----------S----------RQ--------------SRNGAKALLEQLGLGKRLDHLPA- 145 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC----------H----------HH--------------HHHHHHHHHHHcCCHhHhhCChh-
Confidence 9999999998764322110 0 00 01234668899999877777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.||++++|
T Consensus 146 ----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l 219 (228)
T PRK10584 146 ----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRL 219 (228)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEE
Confidence 499999999999999999999999999999999999999999999997655789999887765 45 569999999
Q ss_pred cCCeEEEe
Q 003389 418 SEGQIVYQ 425 (824)
Q Consensus 418 ~~G~iv~~ 425 (824)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
No 133
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.8e-38 Score=332.78 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=171.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----------------CCceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----------------PQRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----------------~~~~i 247 (824)
+++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999887 999999998874321 14579
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+|++|++.+++.+||.||+.++... .+.. . .+ ....+.++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R----------AE--------------AEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H----------HH--------------HHHHHHHHHHHcC
Confidence 9999999999999999999875321 1100 0 00 0112456788999
Q ss_pred CCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 327 L~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
|++..+..+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .+
T Consensus 136 l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~ 209 (252)
T TIGR03005 136 LADKADHMPA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GF 209 (252)
T ss_pred ChhHhhcChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HH
Confidence 9877776554 59999999999999999999999999999999999999999999999875578888887765 46
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
+.++||++++|++|++++.|+.+++
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHH
Confidence 7889999999999999999998776
No 134
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-38 Score=337.58 Aligned_cols=205 Identities=21% Similarity=0.322 Sum_probs=167.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDL- 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~- 255 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999987 999999999875421 1356999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+...||+||+.+.....+.. .. + ....++++++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------QE----------E--------------AEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhCC
Confidence 333469999998764322110 00 0 011245678889996 345655
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|+++|++ .++.++||++
T Consensus 143 ~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i 215 (280)
T PRK13649 143 PF-----ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFV 215 (280)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEE
Confidence 54 5999999999999999999999999999999999999999999999976 478988887765 4777899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 135
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-38 Score=336.52 Aligned_cols=205 Identities=27% Similarity=0.357 Sum_probs=169.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC--C---CCCceEEEEecCCC-CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~-~~ 257 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 46999999999999999999999999999999999999987 9999999998742 1 11356999999864 34
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
...||.||+.+.....+.. .. + ....++.+++.+||.+..++.++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~- 135 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------EA----------E--------------ITRRVDEALTLVDAQHFRHQPIQ- 135 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCHhHhcCCch-
Confidence 5568999998764322210 00 0 01124568889999887777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||++++|
T Consensus 136 ----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~-~~~~~~~~d~i~~l 209 (271)
T PRK13638 136 ----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHD-IDLIYEISDAVYVL 209 (271)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 4999999999999999999999999999999999999999999999975 47888887665 45777899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.3e-38 Score=336.27 Aligned_cols=206 Identities=23% Similarity=0.326 Sum_probs=170.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~ 255 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|+++|+++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 56999999999999999999999999999999999999987 999999999875432 135699999986 4
Q ss_pred CCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 256 HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
+++.+||+||+.+..... ... .. .....++++++.+||. ...+.
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTSLD----------ES------------------------EQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhC
Confidence 667899999998753211 000 00 0012346688999995 56666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|+ ...+.++||+
T Consensus 147 ~~~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~-~~~~~~~~d~ 220 (265)
T TIGR02769 147 LPR-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD-LRLVQSFCQR 220 (265)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-HHHHHHHhcE
Confidence 654 5999999999999999999999999999999999999999999999986557888887765 4477789999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999988764
No 137
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6e-38 Score=327.18 Aligned_cols=197 Identities=27% Similarity=0.359 Sum_probs=169.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999887 999999998775422 35799999999889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+.. ...+..+++.+||++..|..++ .|
T Consensus 89 ~~~~~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKAK-----QF 125 (223)
T ss_pred HHHHHHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhHh-----hC
Confidence 9998764322100 0124557889999887777665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
|||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+++|++. ++.+.||++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999975 4788888877654 678899999999999999
Q ss_pred EecChh
Q 003389 424 YQGPRD 429 (824)
Q Consensus 424 ~~G~~~ 429 (824)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999864
No 138
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-38 Score=344.96 Aligned_cols=207 Identities=20% Similarity=0.256 Sum_probs=173.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d--~ 255 (824)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999999886 999999999876532 235799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
+.+.+||.+++.+..+.... +.+.+ ....+.++|+.+||. ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSAAE------------------------RREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHCCCChHHhcCC
Confidence 88999999999876433210 00000 112356789999996 355665
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+ +.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|+++| +...+.++||+|
T Consensus 152 p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH-dl~~~~~~adrv 225 (327)
T PRK11308 152 P-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH-DLSVVEHIADEV 225 (327)
T ss_pred C-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEE
Confidence 5 4599999999999999999999999999999999999999999999998766888888765 455778899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998874
No 139
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=332.82 Aligned_cols=221 Identities=25% Similarity=0.338 Sum_probs=195.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
..-++|+|++|+.||+..|||-||||||||+++|.++.+|+ +|+|+++|.++..... ++.+++|+|+..+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 34689999999999999999999999999999999999997 9999999998865432 4679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+|+.||.||..|+...+|+... | .+.+..+.|+..||....+.++.
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------e------------------------r~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------E------------------------REERALEALELVGLEGYADKYPN 163 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------H------------------------HHHHHHHHHHHcCchhhhhcCcc
Confidence 9999999999999999987421 1 12245678999999999987765
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+||||+||||.+||||+.+|+|||||||+|+|||--+.++.+-|.++.+..++|||+++ |+..|.+++.|||.+
T Consensus 164 -----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFit-HDLdEAlriG~rIai 237 (386)
T COG4175 164 -----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFIT-HDLDEALRIGDRIAI 237 (386)
T ss_pred -----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHHhccceEEE
Confidence 59999999999999999999999999999999999999999999999998899999865 667899999999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|.+|+||..|++++++. .|...-+++|..++
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 99999999999999963 56666677777654
No 140
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.3e-38 Score=332.07 Aligned_cols=207 Identities=22% Similarity=0.369 Sum_probs=168.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
..+|+|+|++|++||+++|+|||||||||||++|+|+++|. ...+|+|+++|+++... ..++.++|++|+..+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 35999999999999999999999999999999999999762 12389999999987532 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.+....++... .. + ....++.+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKD---------KK----------E--------------LDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCCcchhhHhh
Confidence 88 999999988643321100 00 0 011345688899997 5556
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 140 ~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d 211 (247)
T TIGR00972 140 DSAL-----GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISD 211 (247)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCC
Confidence 5554 5999999999999999999999999999999999999999999999976 47888877654 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+++++.
T Consensus 212 ~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 212 RTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 141
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=320.44 Aligned_cols=182 Identities=45% Similarity=0.747 Sum_probs=156.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~l 260 (824)
++.+|+|+|++|++|++++|+||||||||||+++|+|+++|....+|+|.++|+++... ..++.++|++|++.+++.+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 45799999999999999999999999999999999999983212499999999987643 2246799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.++.+.. .++. +
T Consensus 99 tv~~~l~~~~~~~---------------------------------------------------------~~~~-----~ 116 (202)
T cd03233 99 TVRETLDFALRCK---------------------------------------------------------GNEF-----V 116 (202)
T ss_pred cHHHHHhhhhhhc---------------------------------------------------------cccc-----h
Confidence 9999998753100 1222 3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|+++||+.+++.++||++++|++|
T Consensus 117 ~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G 196 (202)
T cd03233 117 RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196 (202)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECC
Confidence 45999999999999999999999999999999999999999999999986546788888888878899999999999999
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++.|
T Consensus 197 ~i~~~g 202 (202)
T cd03233 197 RQIYYG 202 (202)
T ss_pred EEEecC
Confidence 998765
No 142
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-38 Score=338.82 Aligned_cols=208 Identities=25% Similarity=0.322 Sum_probs=172.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+++|+|||++|++|++++|+||||||||||+++|+|+++|....+|+|+++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999886112399999999876422 2357999999974 6778
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|.....+.. +.+ ....++.+++.+||.+..++.+.
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~--- 142 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RPE------------------------MIKIVRDVLADVGMLDYIDSEPA--- 142 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HHH------------------------HHHHHHHHHHHCCChhHhcCCcc---
Confidence 89999998864322110 000 01235668899999887777665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..|.|+|+++|++. ++ ..||++++|++
T Consensus 143 --~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~ 218 (282)
T PRK13640 143 --NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD 218 (282)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999998655889999887765 45 57999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
No 143
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-38 Score=324.77 Aligned_cols=195 Identities=23% Similarity=0.341 Sum_probs=163.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHHH
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999887 9999999998754322 367999999999999999999998
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
+........ .+ .....++++++.+||++..++.+. .|||||
T Consensus 93 ~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (211)
T cd03298 93 LGLSPGLKL---------TA-------------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGE 133 (211)
T ss_pred cccccccCc---------cH-------------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHH
Confidence 753211000 00 001134668899999887777665 599999
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
|||++||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|+ ..++.++||++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ-PEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999999986557888887665 45777899999999999998764
No 144
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.5e-38 Score=328.13 Aligned_cols=204 Identities=23% Similarity=0.293 Sum_probs=167.9
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC----CCCCcceEeeCCcccCCCCC-CceEEEEecCCC--CCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK----DLRASGKITYCGHELNEFVP-QRTCAYISQHDL--HHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~----~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~--~~~ 258 (824)
+|+|+|++|++|++++|+||||||||||+++|+|+++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 9999999998764322 257999999974 557
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc---cccccc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMV 335 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~v 335 (824)
.+|+.|++.+.....+.. .. +....++++++.+||++ ..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999997754322110 00 00123566889999973 445554
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++..++|+|++.|++ +++..+||+++
T Consensus 124 ~-----~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~ 197 (230)
T TIGR02770 124 F-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVA 197 (230)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 4 59999999999999999999999999999999999999999999999865578888887654 47888999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
No 145
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-38 Score=328.34 Aligned_cols=206 Identities=27% Similarity=0.339 Sum_probs=174.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV 262 (824)
+.+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|+...++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 46999999999999999999999999999999999999987 999999999876432 24679999999998889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.....+.. +. .....++++++.+||++..++.+. .
T Consensus 90 ~~nl~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T cd03300 90 FENIAFGLRLKKLP---------------------KA-------------EIKERVAEALDLVQLEGYANRKPS-----Q 130 (232)
T ss_pred HHHHHHHHHhcCCC---------------------HH-------------HHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99998865432210 00 001134668899999887777665 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865588999987765 467889999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999877653
No 146
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-38 Score=343.41 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CCcceEeeCCcccCCCCC-------CceEEEEecCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~-~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d- 254 (824)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987422 248999999998765421 24699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc---
Q 003389 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC--- 330 (824)
Q Consensus 255 -~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~--- 330 (824)
.+.|.+||.+++.......... .+. +....+.++|+.+||++.
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~---------~~~------------------------~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGG---------NKK------------------------TRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCC---------CHH------------------------HHHHHHHHHHHHCCCCChHHH
Confidence 4789999999887654321100 000 011235678999999742
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.+. .++.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.++.+.|+|+++|+ ...+.++
T Consensus 147 l~~-----~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd-l~~~~~~ 220 (326)
T PRK11022 147 LDV-----YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD-LALVAEA 220 (326)
T ss_pred HhC-----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHh
Confidence 343 3456999999999999999999999999999999999999999999999987668888887665 4477889
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
||+|++|++|++++.|+++++.
T Consensus 221 adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999998874
No 147
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.3e-38 Score=329.62 Aligned_cols=203 Identities=24% Similarity=0.317 Sum_probs=168.6
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEe-cCCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYIS-QHDLHH 257 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~-Q~d~~~ 257 (824)
++.+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++ |++.++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 34567999999999999999999999999999999999999987 99999999875431 1245799998 556777
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.+.....+... .+ ....++++++.+||++..++.+++
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~ 153 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPP----------AR------------------------FKKRLDELSELLDLEELLDTPVRQ 153 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCChhh
Confidence 88999999988644322110 00 011245678899999888887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|
T Consensus 154 -----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l 227 (236)
T cd03267 154 -----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVI 227 (236)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875578988887665 4778899999999
Q ss_pred cCCeEEEec
Q 003389 418 SEGQIVYQG 426 (824)
Q Consensus 418 ~~G~iv~~G 426 (824)
.+|++++.|
T Consensus 228 ~~G~i~~~g 236 (236)
T cd03267 228 DKGRLLYDG 236 (236)
T ss_pred eCCEEEecC
Confidence 999998765
No 148
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-38 Score=334.30 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=165.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 459999999999999999999999999999999999998621 2389999999886421 124679999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.+.....+... . .+ ....++.+++.+++. +..+
T Consensus 100 ~~-~tv~eni~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 FL-MSIYDNISYGPKIHGTKD---------K----------KK--------------LDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred cc-CcHHHHHHHHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHhCCchhhHHHHh
Confidence 74 899999988643221100 0 00 011245567777763 3445
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 146 ~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~d 217 (254)
T PRK14273 146 TNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRISD 217 (254)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCC
Confidence 544 45999999999999999999999999999999999999999999999964 67888876654 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 218 ~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 218 RTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
No 149
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-38 Score=333.68 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=165.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 45999999999999999999999999999999999998751 01399999999887432 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.|..+..+.. .++ ....++++++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KKD------------------------LDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCCcchhhhhc
Confidence 77 89999999864322210 000 011245678888874 3345
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 150 ~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d 221 (258)
T PRK14268 150 SPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISD 221 (258)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999864 68888877654 46778999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 003389 413 DIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~ 431 (824)
++++|++|++++.|+++++
T Consensus 222 ~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 150
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.3e-38 Score=328.35 Aligned_cols=202 Identities=27% Similarity=0.319 Sum_probs=167.3
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ..+|++|++.+++.+||.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999999887 9999999998765322 358999999999999999999
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+.......+ ..+. +....++++++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~~--------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKS------------------------ERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHH------------------------HHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 8753210000 0000 001134568899999887777765 49999
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.++||++++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999999875578888887664 4788899999999999999988
Q ss_pred ChhhH
Q 003389 427 PRDNV 431 (824)
Q Consensus 427 ~~~~~ 431 (824)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65443
No 151
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.9e-38 Score=324.21 Aligned_cols=194 Identities=29% Similarity=0.428 Sum_probs=160.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999887 999999998875432 1357999999864 4678
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. + ....++++++.+||++..++.++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 133 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------EE----------E--------------IEERVEEALELVGLEGLRDRSPF--- 133 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCcHhhhcCCcc---
Confidence 89999998764322110 00 0 01124567889999877776665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|+++|++ .++.++||++++|++
T Consensus 134 --~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~ 209 (211)
T cd03225 134 --TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLED 209 (211)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 49999999999999999999999999999999999999999999999864 78888887664 477888999999999
Q ss_pred Ce
Q 003389 420 GQ 421 (824)
Q Consensus 420 G~ 421 (824)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
No 152
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.9e-38 Score=333.80 Aligned_cols=205 Identities=23% Similarity=0.306 Sum_probs=169.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC----------------CCCceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~----------------~~~~~i 247 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999886 99999999876421 113579
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+|++|++.+++.+||+||+.++.. ..+.. + . +....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K----------Q--------------EARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------H----------H--------------HHHHHHHHHHHHcC
Confidence 999999999999999999987532 11110 0 0 00113456889999
Q ss_pred CCccc-cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 327 LDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 327 L~~~~-dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
|.+.. +..+ +.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|++ .
T Consensus 141 l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~ 213 (257)
T PRK10619 141 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-G 213 (257)
T ss_pred CChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H
Confidence 97653 5444 46999999999999999999999999999999999999999999999976 488988887664 4
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 406 e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++.++||++++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 777899999999999999999988763
No 153
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=327.43 Aligned_cols=202 Identities=23% Similarity=0.387 Sum_probs=170.1
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHH
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
.|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 92 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNI 92 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHH
Confidence 3899999999999999999999999999999999887 9999999998764322 35799999999999999999999
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+.... .... .+ .....++++++.+||++..++.+. .||||
T Consensus 93 ~~~~~~-~~~~--------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 133 (232)
T PRK10771 93 GLGLNP-GLKL--------NA-------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGG 133 (232)
T ss_pred hccccc-ccCC--------CH-------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHH
Confidence 875321 0000 00 001235668899999888887775 49999
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
|||||+||++++.+|++++|||||+|||..++..+.+.|+++++..++|+|++.|++. ++.++||++++|++|++++.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999997655789888876654 678899999999999999999
Q ss_pred ChhhHH
Q 003389 427 PRDNVL 432 (824)
Q Consensus 427 ~~~~~~ 432 (824)
+.+++.
T Consensus 213 ~~~~~~ 218 (232)
T PRK10771 213 PTDELL 218 (232)
T ss_pred CHHHHH
Confidence 987764
No 154
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=330.00 Aligned_cols=201 Identities=24% Similarity=0.360 Sum_probs=167.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 45999999999999999999999999999999999999887 999999998875432 2457999999987776 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 339 (824)
||+||+.+.....+. ....+..+++.+||+ +..++.+.
T Consensus 92 tv~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~--- 130 (241)
T PRK14250 92 TVKDNIEYGPMLKGE--------------------------------------KNVDVEYYLSIVGLNKEYATRDVK--- 130 (241)
T ss_pred hHHHHHhcchhhcCc--------------------------------------HHHHHHHHHHHcCCCHHHhhCCcc---
Confidence 999999875321100 001235578889996 45555544
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.++||+|++|++
T Consensus 131 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 131 --NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNK 207 (241)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999999764578988877654 467889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
No 155
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.5e-38 Score=325.04 Aligned_cols=200 Identities=29% Similarity=0.428 Sum_probs=161.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lT 261 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999887 9999999987642 346799999987653 3489
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+....... . .. .... .....++.+++.+||++..++.++
T Consensus 87 v~e~l~~~~~~~~~-~----~~-----------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~----- 131 (213)
T cd03235 87 VRDVVLMGLYGHKG-L----FR-----------RLSK--------------ADKAKVDEALERVGLSELADRQIG----- 131 (213)
T ss_pred HHHHHHhccccccc-c----cc-----------CCCH--------------HHHHHHHHHHHHcCCHHHHhCCcc-----
Confidence 99999885421100 0 00 0000 001235668899999877777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-
Confidence 4999999999999999999999999999999999999999999999986 578888887664 4778899999999886
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 56554
No 156
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-37 Score=347.02 Aligned_cols=199 Identities=26% Similarity=0.437 Sum_probs=170.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~~~~~lT 261 (824)
|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999987 99999999887432 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+...... .+ ....++++++.+||++..++.+.
T Consensus 92 v~enl~~~~~~~~~------------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~----- 130 (354)
T TIGR02142 92 VRGNLRYGMKRARP------------SE------------------------RRISFERVIELLGIGHLLGRLPG----- 130 (354)
T ss_pred HHHHHHHHhhccCh------------hH------------------------HHHHHHHHHHHcCChhHhcCChh-----
Confidence 99999986431100 00 01135668899999988887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++..+||++++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 49999999999999999999999999999999999999999999999875578888887654 47888999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
No 157
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=342.79 Aligned_cols=258 Identities=24% Similarity=0.358 Sum_probs=216.9
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
...+..-+|+.+.+.+.|+ ...++.++-|+-.+..+++++- .
T Consensus 303 ~~Ar~s~~Rl~~lL~~~p~--------~~~~m~LP~P~g~L~Ve~l~~~---P--------------------------- 344 (580)
T COG4618 303 VAARQSYKRLNELLAELPA--------AAERMPLPAPQGALSVERLTAA---P--------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHHHhCcc--------ccCCCCCCCCCceeeEeeeeec---C---------------------------
Confidence 3456667888888777666 2345778888888999988762 1
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d 254 (824)
...++++|+||||.+.+|+.++|+||||||||||.|+|.|..+|. +|.|.+||.+++.+.+ -+.|||.||+-
T Consensus 345 --Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 345 --PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred --CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 112467999999999999999999999999999999999999986 9999999999987765 38899999976
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+|+ -||.|||. |+ .++.+.+.+.+|+..++.++- ++.|++.+||.
T Consensus 420 eLF~-GTIaeNIa---Rf----------------------~~~~d~~kIieAA~lAgvHel--------Il~lP~GYdT~ 465 (580)
T COG4618 420 ELFD-GTIAENIA---RF----------------------GEEADPEKVIEAARLAGVHEL--------ILRLPQGYDTR 465 (580)
T ss_pred eecC-CcHHHHHH---hc----------------------cccCCHHHHHHHHHHcChHHH--------HHhCcCCccCc
Confidence 6665 49999994 21 234566777888887775442 67899999999
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
||+ ...+||||||||+++||||.++|.+++||||-|+||+..+..+.+.|.++.+ .|+|+|++.|.| .+...+|+|
T Consensus 466 iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dki 541 (580)
T COG4618 466 IGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKI 541 (580)
T ss_pred cCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhccee
Confidence 996 4667999999999999999999999999999999999999999999999876 588888887766 588899999
Q ss_pred EEEcCCeEEEecChhhHHHHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLEFFE 436 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~~f~ 436 (824)
++|++|++-.+|++++++....
T Consensus 542 lvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 542 LVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred eeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999987553
No 158
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=337.55 Aligned_cols=205 Identities=20% Similarity=0.309 Sum_probs=167.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----C----CCCceEEEEecCCC-
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----F----VPQRTCAYISQHDL- 255 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----~----~~~~~i~yv~Q~d~- 255 (824)
.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999999886 9999999988642 1 12357999999863
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~ 334 (824)
.+...||+||+.|.....+.. ..+ ....++.+++.++|+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~----------~~~------------------------~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN----------KQE------------------------AYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHHcCCChhHhcCC
Confidence 233469999998864321110 000 011245678899994 566666
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..++|+|++.|++ +++.++||++
T Consensus 148 ~~-----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i 221 (289)
T PRK13645 148 PF-----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEV 221 (289)
T ss_pred hh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEE
Confidence 54 59999999999999999999999999999999999999999999999865578888877654 4778899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
No 159
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.5e-37 Score=328.01 Aligned_cols=213 Identities=24% Similarity=0.286 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 565 9999999998754322 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||+|++.+......... .. ...+.. +....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~----------~~------~~~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR----------GE------EPLDLL-----------DFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc----------cc------ccccHH-----------HHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999988643211000 00 000000 0012356788999997 45565553
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++... ||+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999975 578888887765 466677 89999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987554
No 160
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-37 Score=326.86 Aligned_cols=204 Identities=27% Similarity=0.415 Sum_probs=173.2
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|+|++|+|||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||.|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 899999999999999999999999999999999999987 9999999998765322 457999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+.....+... .+ ....+.++++.+||.+..++.+. .||
T Consensus 91 ~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK--------------------KE--------------IERKVLEIAEMLGIDHLLNRKPE-----TLS 131 (235)
T ss_pred HHHHHHHHcCCCH--------------------HH--------------HHHHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 9987643221100 00 01124567889999887887765 499
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|+++|++ +++.++||++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765588999988765 46788999999999999999
Q ss_pred ecChhhHH
Q 003389 425 QGPRDNVL 432 (824)
Q Consensus 425 ~G~~~~~~ 432 (824)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987664
No 161
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-38 Score=330.43 Aligned_cols=204 Identities=25% Similarity=0.328 Sum_probs=169.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC------C---CCCceEEEEecCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------F---VPQRTCAYISQHD 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~------~---~~~~~i~yv~Q~d 254 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 46999999999999999999999999999999999999887 9999999987631 0 1135699999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 255 LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
.+++.+||.||+.+.. ...+.. .. + ....+..+++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS----------KD----------Q--------------ALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhC
Confidence 9999999999997532 111110 00 0 01134668889999877777
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.++||+
T Consensus 138 ~~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~ 210 (242)
T PRK11124 138 FPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASR 210 (242)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCE
Confidence 665 5999999999999999999999999999999999999999999999875 4788888776654 67788999
Q ss_pred EEEEcCCeEEEecChhhH
Q 003389 414 IILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~ 431 (824)
+++|.+|++++.|+.+++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999987754
No 162
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=331.03 Aligned_cols=209 Identities=21% Similarity=0.336 Sum_probs=167.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCC--C---CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ ...+|+|+++|+++.. . ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 46999999999999999999999999999999999998762 1248999999998752 1 123579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++.+||.||+.++...++... +..+ ....++++++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVK------------------SKKE--------------LDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccC------------------CHHH--------------HHHHHHHHHHHcCCccchhhhhc
Confidence 999999999988643221100 0000 0012456778888743 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 145 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 216 (253)
T PRK14267 145 DY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSD 216 (253)
T ss_pred cC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCC
Confidence 33 446999999999999999999999999999999999999999999999964 57888887664 46788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 163
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-37 Score=328.83 Aligned_cols=209 Identities=23% Similarity=0.314 Sum_probs=168.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCC---CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV---PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~ 258 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|. ...+|+|.++|+++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 46999999999999999999999999999999999998741 124999999999875432 2467999999988899
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccccc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTM 334 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~dt~ 334 (824)
.+||.||+.+.....+... +..+ ....+.++++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK------------------SKKE--------------LQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccC------------------CHHH--------------HHHHHHHHHHHcCCCcchhhhhcCC
Confidence 9999999988643221100 0000 0113456788889854 34444
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.++||++
T Consensus 144 ~-----~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i 215 (250)
T PRK14247 144 A-----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYV 215 (250)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEE
Confidence 4 46999999999999999999999999999999999999999999999863 67888877665 4677899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999988763
No 164
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.1e-37 Score=365.61 Aligned_cols=256 Identities=24% Similarity=0.374 Sum_probs=195.5
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.+...+|+.++++.+++.. . .....+...-.++++|+++..+.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~-----~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEKD-----T--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-----C--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 4556677777777776544410 0 00011111235888888875311
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.++++|+|+|++|++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++|++|+
T Consensus 343 -----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 414 (571)
T TIGR02203 343 -----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQD 414 (571)
T ss_pred -----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccC
Confidence 1246999999999999999999999999999999999999997 9999999998876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++. .|++|||.++.. ++.+.+++.+++...+. ++.+ -.|++..||
T Consensus 415 ~~lf~-~Ti~~Ni~~~~~------------------------~~~~~~~i~~~l~~~~l------~~~i--~~lp~gldt 461 (571)
T TIGR02203 415 VVLFN-DTIANNIAYGRT------------------------EQADRAEIERALAAAYA------QDFV--DKLPLGLDT 461 (571)
T ss_pred ccccc-ccHHHHHhcCCC------------------------CCCCHHHHHHHHHHcCh------HHHH--HhCcCcccc
Confidence 87665 599999987520 01222333333332221 1122 246677899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. .+.||||||||++|||+++.+|++++|||||++||..++..|.+.|+++.+ ++|+|+++|++ +..+.||+
T Consensus 462 ~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~--~~~~~~D~ 536 (571)
T TIGR02203 462 PIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRL--STIEKADR 536 (571)
T ss_pred eecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhh--HHHHhCCE
Confidence 99975 567999999999999999999999999999999999999999999999853 78999988886 56788999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|+++..|+++++.
T Consensus 537 ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999875
No 165
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-38 Score=335.20 Aligned_cols=209 Identities=22% Similarity=0.341 Sum_probs=171.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 46999999999999999999999999999999999999887 999999998875322 135699999998888899
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.+...... .. . . ..... ....++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~~-------~-------~-~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-------L-------G-RFGAA--------------DREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-cc-------c-------c-CCCHH--------------HHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 00 0 0 00000 011346688899998777777664
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ +++.++||++++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999765578888887664 4788899999999999
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
++++.|+.+++
T Consensus 225 ~i~~~~~~~~~ 235 (265)
T PRK10575 225 EMIAQGTPAEL 235 (265)
T ss_pred eEEEecCHHHh
Confidence 99999988765
No 166
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.3e-37 Score=333.65 Aligned_cols=206 Identities=22% Similarity=0.257 Sum_probs=169.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC--CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL--HHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~--~~~ 258 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999988753211 246999999864 567
Q ss_pred CCCHHHHHHHhhhhcC-CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 259 EMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~-~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
.+||.+++.+..+... .. .. + ....++.+++.+||. ...++.+.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE----------PE----------Q--------------REKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred chhHHHHHHHHHHhccCCC----------HH----------H--------------HHHHHHHHHHHcCCChHHHhcCch
Confidence 8899999987643221 00 00 0 011346688999994 55665554
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.++||++++
T Consensus 149 -----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~ 222 (267)
T PRK15112 149 -----MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLV 222 (267)
T ss_pred -----hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEE
Confidence 59999999999999999999999999999999999999999999999865578888877665 578889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+.+++.
T Consensus 223 l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 223 MHQGEVVERGSTADVL 238 (267)
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999887764
No 167
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9e-38 Score=333.82 Aligned_cols=216 Identities=24% Similarity=0.297 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--------CCceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--------PQRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--------~~~~i~yv~Q~d~ 255 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+...+|+|+++|+++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 46999999999999999999999999999999999999875223699999998874321 1356899999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+++.+||+||+.+....... . ..+.. .. ... +....++++++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~-----~----~~~~~--~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP-----F----WRTCF--SW-FTR--------------EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc-----c----hhhhc--cc-ccH--------------HHHHHHHHHHHHcCCHHHHhCCc
Confidence 89999999999875321000 0 00000 00 000 01123567889999988777776
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|+++|++ .++.++||+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 6 49999999999999999999999999999999999999999999999865578888887665 46788999999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998753
No 168
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=334.12 Aligned_cols=210 Identities=22% Similarity=0.351 Sum_probs=172.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 46999999999999999999999999999999999999887 9999999998754321 35699999999888899
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+....... .. . ... + .....++++++.+||++..++.+.
T Consensus 97 tv~~~~~~~~~~~~~-----~~---~--------~~~-~-------------~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (265)
T PRK10253 97 TVQELVARGRYPHQP-----LF---T--------RWR-K-------------EDEEAVTKAMQATGITHLADQSVD---- 142 (265)
T ss_pred cHHHHHHhCcccccc-----cc---c--------CCC-H-------------HHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 999999875311000 00 0 000 0 001134668889999877776665
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++|++|
T Consensus 143 -~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 143 -TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREG 220 (265)
T ss_pred -cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999999864578888887665 4788999999999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999987764
No 169
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2e-37 Score=321.10 Aligned_cols=199 Identities=22% Similarity=0.283 Sum_probs=166.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|+.|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 999999999875422 2467999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+...... . ... +....++++++.+||++..++.+. .||
T Consensus 90 n~~~~~~~~~-~-------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-K-------------------LNA--------------EQQEKVVDAAQQVGIADYLDRLPE-----QLS 130 (213)
T ss_pred HHHhHhhccC-C-------------------ccH--------------HHHHHHHHHHHHcCcHHHhhCCcc-----cCC
Confidence 9987532100 0 000 001134568899999877777665 599
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
||||||++||++|+.+|++++|||||+|||..++..+.+.|+++.+..+.|+|++.|++ .++.++||++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999865578888877654 47778999999999999998
Q ss_pred ecC
Q 003389 425 QGP 427 (824)
Q Consensus 425 ~G~ 427 (824)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
No 170
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=329.66 Aligned_cols=210 Identities=22% Similarity=0.316 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+.+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 359999999999999999999999999999999999864 1112399999999887531 114579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.+.....+.... .+ ....++.+++.+||.+...+..
T Consensus 99 ~~-~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGVKDK-------------------AY--------------LAERVERSLRHAALWDEVKDRL- 143 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhHHh-
Confidence 77 5999999886433221000 00 0112455777888854221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.++||++++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~v~~ 220 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDVTAF 220 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999953 67888877654 477889999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|+++..|+++++
T Consensus 221 l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 221 FYMGKLIEVGPTEQI 235 (253)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998776
No 171
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.8e-37 Score=372.42 Aligned_cols=257 Identities=23% Similarity=0.370 Sum_probs=198.9
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.++|... . +....+.....++++|+++.+.
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~~~----~--~~~~~~~~~~~i~~~~vsf~y~---------------------------- 466 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEPRS----A--GLAALPELRGAITFENIRFRYA---------------------------- 466 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCccC----C--CCCCCCCCCCeEEEEEEEEEcC----------------------------
Confidence 45677778888888876655210 0 0011111134688888887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
...+.+|+|+|++|+||+.++|+|+||||||||+|+|+|+++|+ +|+|++||+++++... ++.++||+|+
T Consensus 467 ----~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 467 ----PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred ----CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 11245999999999999999999999999999999999999997 9999999999876543 4679999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .|++|||.++. |+.+.+++.+++...+. ++.++ .|+...||
T Consensus 540 ~~lf~-~ti~eNi~~~~-------------------------~~~~~~~i~~a~~~~~l------~~~i~--~lp~gl~t 585 (694)
T TIGR01846 540 NVLFS-RSIRDNIALCN-------------------------PGAPFEHVIHAAKLAGA------HDFIS--ELPQGYNT 585 (694)
T ss_pred Ceehh-hhHHHHHhcCC-------------------------CCCCHHHHHHHHHHcCh------HHHHH--hCcCccCc
Confidence 77775 59999998742 12222334444433322 22222 45677899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+. ...||||||||++|||||+.+|++|+|||||++||+.++..+.+.|+++. .++|+|++.|++. +.+.||+
T Consensus 586 ~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ 660 (694)
T TIGR01846 586 EVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDR 660 (694)
T ss_pred EecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCE
Confidence 99864 56799999999999999999999999999999999999999999999985 3789999888764 5577999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 661 ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999998764
No 172
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2e-37 Score=395.06 Aligned_cols=212 Identities=26% Similarity=0.388 Sum_probs=177.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC---------------------------------------
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--------------------------------------- 224 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--------------------------------------- 224 (824)
.+||+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999982
Q ss_pred ------------CCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHH
Q 003389 225 ------------LRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289 (824)
Q Consensus 225 ------------~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e 289 (824)
.+.+|+|++||+++.+... ++.++||+|++.+| ..||+|||.|+.
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~------------------- 1320 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK------------------- 1320 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC-------------------
Confidence 0149999999999877643 57899999998777 469999999862
Q ss_pred HhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCC
Q 003389 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369 (824)
Q Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEP 369 (824)
|+.+.+++.+|+..++.+.. +..|++.+||.||+ ....||||||||++|||||+++|+||+||||
T Consensus 1321 ------~~at~eeI~~A~k~A~l~~f--------I~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEa 1385 (1466)
T PTZ00265 1321 ------EDATREDVKRACKFAAIDEF--------IESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEA 1385 (1466)
T ss_pred ------CCCCHHHHHHHHHHcCCHHH--------HHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 22233445555555543332 34688999999995 4556999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC----CeEE-EecChhhHH
Q 003389 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE----GQIV-YQGPRDNVL 432 (824)
Q Consensus 370 TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~----G~iv-~~G~~~~~~ 432 (824)
||+||+.++..|.+.|+++....++|+|++.|++ ++.+.||+|++|++ |+++ ++|++++++
T Consensus 1386 TSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1386 TSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999998532478999988876 57788999999999 9955 899999986
No 173
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=4.6e-37 Score=364.01 Aligned_cols=208 Identities=24% Similarity=0.370 Sum_probs=171.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++++||+.++|+|+||||||||+|+|+|+++|+ +|+|.+||+++++... ++.++||+|++.+++ .
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 423 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-R 423 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCccccc-c
Confidence 35999999999999999999999999999999999999997 9999999999876543 478999999987775 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++. |+.+.+++.+++...+. ++.++ .++...||.+|+. .
T Consensus 424 Ti~~Ni~~~~-------------------------~~~~d~~i~~al~~~~l------~~~i~--~lp~gldt~i~~~-g 469 (588)
T PRK13657 424 SIEDNIRVGR-------------------------PDATDEEMRAAAERAQA------HDFIE--RKPDGYDTVVGER-G 469 (588)
T ss_pred cHHHHHhcCC-------------------------CCCCHHHHHHHHHHhCH------HHHHH--hCcccccchhcCC-C
Confidence 9999998752 11112222222222221 11222 3567789999864 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+.+|++|+||||||+||+.++..|.+.|+++.+ ++|+|++.|++ +..+.||+|++|++|
T Consensus 470 ~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~--~~~~~~D~ii~l~~G 545 (588)
T PRK13657 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRL--STVRNADRILVFDNG 545 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecH--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 78999988886 467889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++..|+++++.+
T Consensus 546 ~i~~~g~~~~l~~ 558 (588)
T PRK13657 546 RVVESGSFDELVA 558 (588)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999988753
No 174
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-38 Score=332.31 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=171.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999886 999999998765432 235699999998888889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.++..... ..... .+ . .....++++++.+||++..++.++
T Consensus 92 tv~~~i~~~~~~~~-----~~~~~----------~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (255)
T PRK11231 92 TVRELVAYGRSPWL-----SLWGR----------LS-A--------------EDNARVNQAMEQTRINHLADRRLT---- 137 (255)
T ss_pred cHHHHHHhccchhh-----hhccC----------CC-H--------------HHHHHHHHHHHHcCCHHHHcCCcc----
Confidence 99999988531100 00000 00 0 001234668889999877777765
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|+++|++ .++.++||++++|++|
T Consensus 138 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 138 -DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANG 214 (255)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECC
Confidence 4999999999999999999999999999999999999999999999875 478888887665 4788999999999999
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
+++..|+.+++
T Consensus 215 ~i~~~~~~~~~ 225 (255)
T PRK11231 215 HVMAQGTPEEV 225 (255)
T ss_pred eEEEEcCHHHh
Confidence 99999988765
No 175
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.6e-38 Score=323.31 Aligned_cols=195 Identities=25% Similarity=0.358 Sum_probs=162.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~~~ 258 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 46999999999999999999999999999999999999887 99999999987421 12467999999998999
Q ss_pred CCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.+... .++.. .. +....++.+++.+||++..++.+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 134 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------KA------------------------EAEERALELLEKVGLADKADAYPA- 134 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhhCcc-
Confidence 9999999988632 11100 00 001124567889999877777665
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|++.|+ ..++.++||++++|
T Consensus 135 ----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~-~~~~~~~~d~i~~l 208 (213)
T cd03262 135 ----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHE-MGFAREVADRVIFM 208 (213)
T ss_pred ----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 5999999999999999999999999999999999999999999999986 47888887665 45778899999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
No 176
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.3e-37 Score=360.29 Aligned_cols=255 Identities=21% Similarity=0.349 Sum_probs=195.3
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.....+|+.++++.+++.. + ....+.+...++++|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~~-----~---~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSRD-----P---AMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCcccc-----C---CCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 3566777888888876654421 0 0111222345888888875310
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+++++|+|+|++++||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 400 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQD 400 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCC
Confidence 1246899999999999999999999999999999999999997 9999999998876432 4689999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. |++||+.+... +.+.+++.+++...+ .++.++ .|++..||
T Consensus 401 ~~lf~~-ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~------~~~~i~--~l~~gl~t 446 (544)
T TIGR01842 401 VELFPG-TVAENIARFGE-------------------------NADPEKIIEAAKLAG------VHELIL--RLPDGYDT 446 (544)
T ss_pred cccccc-cHHHHHhccCC-------------------------CCCHHHHHHHHHHhC------hHHHHH--hCcccccc
Confidence 888875 99999975321 111122222222221 223344 34566788
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++.++.+.|+++.. .++|+|++.|++. ..+.||+
T Consensus 447 ~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~ 522 (544)
T TIGR01842 447 VIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDK 522 (544)
T ss_pred ccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCE
Confidence 8885 4667999999999999999999999999999999999999999999999863 4789999888874 5678999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|++++.|+++++.
T Consensus 523 i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 523 ILVLQDGRIARFGERDEVL 541 (544)
T ss_pred EEEEECCEEEeeCCHHHHh
Confidence 9999999999999998774
No 177
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=310.24 Aligned_cols=208 Identities=29% Similarity=0.444 Sum_probs=173.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.+||.+++.+.+ .+.-+.++|+..+-+.
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 456999999999999999999999999999999999999997 9999999999987765 3667999999887777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||+|-+.++..-.+.+.. |. ++..+++.+|...++.+.+..-
T Consensus 90 Ftv~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R~----- 132 (259)
T COG4559 90 FTVQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGRD----- 132 (259)
T ss_pred eEHHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhccc-----
Confidence 7999999998654432210 00 1122456677788887776544
Q ss_pred CCCCCHHHHHHHHHHHHHHc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 340 RRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+.|||||||||.+||.|+. ++++||||||||.||...+..+++..|+++++ |..|+++ +|+...+..+||+
T Consensus 133 y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~V-LHDLNLAA~YaDr 210 (259)
T COG4559 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAV-LHDLNLAAQYADR 210 (259)
T ss_pred hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEE-EccchHHHHhhhe
Confidence 35699999999999999975 44699999999999999999999999999985 6566554 5677788999999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++||++..|++++++
T Consensus 211 ivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 211 IVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeeCCeEeecCCHHHhc
Confidence 9999999999999998875
No 178
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2.5e-37 Score=325.64 Aligned_cols=206 Identities=27% Similarity=0.407 Sum_probs=174.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 46999999999999999999999999999999999999886 9999999998764332 3679999999988999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.||+.+....++... . . ....++++++.+++....++.++ .
T Consensus 90 ~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK----------A----------K--------------IKARVEELLELVQLEGLGDRYPN-----Q 130 (237)
T ss_pred HHHHHhHHHhcCCCH----------H----------H--------------HHHHHHHHHHHcCCHhHhhCChh-----h
Confidence 999987643321100 0 0 00124568889999877777665 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||+||++||++|+.+|++++|||||+|||..+...+.+.|+++++..++|+|+++|++. ++.++||++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644789999887764 67889999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
No 179
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.6e-37 Score=327.83 Aligned_cols=207 Identities=23% Similarity=0.277 Sum_probs=167.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CCcceEeeCCcccCCCCC-CceEEEEecCCC--CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-QRTCAYISQHDL--HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~-~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~--~~~~ 259 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|+++..... ++.++|++|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 358999999999999999999999999999999999998710 139999999998754322 357999999974 4466
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc---ccccccc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMVG 336 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~vg 336 (824)
+|+.+++.+.+...+.. . ....+..+++.+||.+ ..++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~---------------------~---------------~~~~~~~~l~~~~l~~~~~~~~~~~- 138 (254)
T PRK10418 96 HTMHTHARETCLALGKP---------------------A---------------DDATLTAALEAVGLENAARVLKLYP- 138 (254)
T ss_pred ccHHHHHHHHHHHcCCC---------------------h---------------HHHHHHHHHHHcCCCChhhhhhcCC-
Confidence 89999886643221110 0 0012456888999975 345554
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.++||++++
T Consensus 139 ----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~ 213 (254)
T PRK10418 139 ----FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAV 213 (254)
T ss_pred ----cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEE
Confidence 459999999999999999999999999999999999999999999999875578888887664 467789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 214 MSHGRIVEQGDVETLF 229 (254)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999988763
No 180
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=332.23 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=175.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~-~~~~ 259 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999987 999999999875422 2467999999964 6777
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
.||.||+.+.....+.. +.+ ....++++++.+||.+..++.+.
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~--- 139 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------REE------------------------MIKRVDEALLAVNMLDFKTREPA--- 139 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCcc---
Confidence 89999998764322110 000 01135678889999877777655
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+.. ++. .||++++|++
T Consensus 140 --~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~ 215 (277)
T PRK13642 140 --RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKA 215 (277)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEEC
Confidence 599999999999999999999999999999999999999999999998755889999877654 454 6999999999
Q ss_pred CeEEEecChhhHHH---HHHHcCCCCC
Q 003389 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (824)
Q Consensus 420 G~iv~~G~~~~~~~---~f~~~G~~~p 443 (824)
|+++..|+++++.. .+...+..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (277)
T PRK13642 216 GEIIKEAAPSELFATSEDMVEIGLDVP 242 (277)
T ss_pred CEEEEeCCHHHHhcCHHHHHHCCCCCC
Confidence 99999999887642 2334455544
No 181
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.1e-37 Score=329.95 Aligned_cols=208 Identities=27% Similarity=0.415 Sum_probs=171.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999998765322 34699999998778889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+...... ... . .+..+ ....+.++++.+||.+..++.++
T Consensus 91 tv~e~l~~~~~~~~---------~~~------~-~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~---- 136 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SLW------A-GDSPH--------------DAAVVDRALARTELSHLADRDMS---- 136 (256)
T ss_pred CHHHHHHhcchhhh---------hhc------c-CCCHH--------------HHHHHHHHHHHcCcHhhhcCCcc----
Confidence 99999987521000 000 0 00000 01134568889999877777765
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ++.++||+|++|++|
T Consensus 137 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 137 -TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGG 213 (256)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999999975 4788888877654 778899999999999
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999998765
No 182
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.6e-37 Score=360.67 Aligned_cols=208 Identities=25% Similarity=0.372 Sum_probs=170.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
..+|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++|++|++.+++.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD- 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-
Confidence 45999999999999999999999999999999999999997 9999999998876433 4679999999887764
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++.. +.+.+++.+++...+.+. ....|++..||.+|+. .
T Consensus 404 ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~~l~~--------~i~~lp~gl~t~~~~~-g 449 (569)
T PRK10789 404 TVANNIALGRP-------------------------DATQQEIEHVARLASVHD--------DILRLPQGYDTEVGER-G 449 (569)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHcCCHH--------HHHhCcCcccceecCC-C
Confidence 99999987521 111122222222221111 1335677889999864 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++ +..+.||+|++|++|
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G 525 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHG 525 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999999985 378999988887 456779999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++.+|+++++.+
T Consensus 526 ~i~~~g~~~~l~~ 538 (569)
T PRK10789 526 HIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEecCHHHHHH
Confidence 9999999988753
No 183
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=326.34 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=166.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 469999999999999999999999999999999999986 3212489999999887431 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+..+..+... .. + ....++++++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------RS----------E--------------ADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhHHh-
Confidence 999999999987643211000 00 0 0112456778888854211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCCEEEE
Confidence 123446999999999999999999999999999999999999999999999975 57888877654 477889999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|+++..|+++++
T Consensus 220 l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 220 FYMGDLVECGETKKI 234 (252)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
No 184
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-37 Score=326.88 Aligned_cols=207 Identities=18% Similarity=0.319 Sum_probs=166.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCC-----CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+|. .+.+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 46999999999999999999999999999999999998751 124899999999875321 14569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ +||+||+.|.....+... ..+ ....++.+++.+||.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKD---------KKE------------------------LDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCc---------HHH------------------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 87 899999988643322100 000 0112345777887742 334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. .+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.++||
T Consensus 143 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d 214 (251)
T PRK14270 143 KS-----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSD 214 (251)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcC
Confidence 43 446999999999999999999999999999999999999999999999875 47888877664 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999988763
No 185
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.9e-37 Score=329.20 Aligned_cols=207 Identities=23% Similarity=0.354 Sum_probs=167.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc-----cCCCCC-------CceEEEEe
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~-----~~~~~~-------~~~i~yv~ 251 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|++ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 46999999999999999999999999999999999999987 9999999987 544321 24699999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 252 Q~d~--~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+.. +.+.+|+.||+.+.....+.. ...+ ....++++++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR-------------------HYGD--------------IRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC-------------------cHHH--------------HHHHHHHHHHHcCCCh
Confidence 9963 567789999997643211100 0000 0112456888999963
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..++.++ .|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.
T Consensus 143 ~~~~~~~~-----~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~ 216 (258)
T PRK11701 143 ARIDDLPT-----TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVAR 216 (258)
T ss_pred hHHhCCCc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHH
Confidence 5565554 59999999999999999999999999999999999999999999998765578888876654 4677
Q ss_pred hhcCeEEEEcCCeEEEecChhhHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
+.||++++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 889999999999999999988763
No 186
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=326.16 Aligned_cols=211 Identities=21% Similarity=0.307 Sum_probs=164.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |+...+|+|.++|+++... ..++.++|++|+..+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 459999999999999999999999999999999999854 4222489999999987421 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ +||+||+.+.....+... ... ....+.++++.+++.....+..
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKD-------------------KQV--------------LDEAVEKSLKGASIWDEVKDRL- 142 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCc-------------------HHH--------------HHHHHHHHHHHcCCchhHHHHH-
Confidence 77 899999988643222100 000 0112345677777743211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ +++.++||++++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~ 219 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISDRTGF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999864 57888877654 478889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+.+++.
T Consensus 220 l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 220 FLDGDLIEYNDTKQMF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
No 187
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=324.34 Aligned_cols=211 Identities=20% Similarity=0.286 Sum_probs=167.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|||++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 46999999999999999999999999999999999998641 12499999999987531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.++....+... + .+ ....+.++++.++|.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------K----------KV--------------LDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHcCCCchhhhhh-
Confidence 77 599999988643221100 0 00 0112455778888854322222
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+++|++. ++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhcCEEEE
Confidence 234557999999999999999999999999999999999999999999999953 678888776654 78899999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
No 188
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-37 Score=326.46 Aligned_cols=206 Identities=20% Similarity=0.309 Sum_probs=164.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
.++|+|+|++|++|++++|+||||||||||+++|+|+++ |....+|+|.++|+++... ..++.++|++|+..+
T Consensus 26 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 105 (260)
T PRK10744 26 FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105 (260)
T ss_pred eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCcc
Confidence 359999999999999999999999999999999999986 2112489999999887421 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----cc
Q 003389 257 HGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CA 331 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~ 331 (824)
++ +||+||+.+..... +.. .. + ....++++++.+||.. ..
T Consensus 106 ~~-~tv~~nl~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~ 150 (260)
T PRK10744 106 FP-MSIYDNIAFGVRLFEKLS----------RA----------E--------------MDERVEWALTKAALWNEVKDKL 150 (260)
T ss_pred Cc-CcHHHHHhhhHhhcCCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhHHHH
Confidence 77 89999998864322 110 00 0 0112456788888742 33
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
++. ...|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.++|
T Consensus 151 ~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~ 222 (260)
T PRK10744 151 HQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCS 222 (260)
T ss_pred hcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhC
Confidence 443 346999999999999999999999999999999999999999999999953 67888877664 4677899
Q ss_pred CeEEEEcCCeEEEecChhhHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~ 432 (824)
|++++|++|+++..|+.+++.
T Consensus 223 d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 223 DYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999988763
No 189
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-37 Score=340.08 Aligned_cols=215 Identities=17% Similarity=0.179 Sum_probs=169.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCCcceEeeCCcccCCCCC-------CceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~ 255 (824)
..+|+|||++|++||+++|+|+||||||||+++|+|++++. ...+|+|.|+|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 46999999999999999999999999999999999998742 1248999999998764322 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc---
Q 003389 256 --HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC--- 330 (824)
Q Consensus 256 --~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~--- 330 (824)
+.+.+||.+++.+......... . .....+ +....+.++|+.+||.+.
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~------~---------~~~~~~-------------~~~~~~~~~L~~~gL~~~~~~ 151 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKG------R---------WWQRFG-------------WRKRRAIELLHRVGIKDHKDA 151 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccc------c---------ccccHH-------------HHHHHHHHHHHHCCCCChHHH
Confidence 6788999999976422110000 0 000000 001235678999999753
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.++. +..|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++.|.|+|+++| ....+.++
T Consensus 152 ~~~~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH-dl~~v~~~ 225 (330)
T PRK15093 152 MRSF-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH-DLQMLSQW 225 (330)
T ss_pred HhCC-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC-CHHHHHHh
Confidence 3444 45699999999999999999999999999999999999999999999998766888888765 45678899
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
||+|++|++|+|++.|+.+++.
T Consensus 226 ~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 226 ADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999988764
No 190
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-37 Score=325.05 Aligned_cols=232 Identities=24% Similarity=0.319 Sum_probs=185.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-C-CCCCcceEeeCCcccCCCCC-------CceEEEEecC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-K-DLRASGKITYCGHELNEFVP-------QRTCAYISQH 253 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~-~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~ 253 (824)
...+++||||+|++||+++|+|.|||||||+.++|.|+++ + ....+|+|.|+|+++-.... .+.|+||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4569999999999999999999999999999999999997 4 33468999999997754332 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 254 D--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 254 d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+ .+.|.+||.+.+.-..+.+.... .+ .+....+.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~~------------------------~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------SK------------------------KEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------hh------------------------HHHHHHHHHHHHHcCCCCHH
Confidence 6 67899999988866544321100 00 01122456789999998632
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
. +-+.++.+|||||||||.||.||+.+|++||.||||++||...+.+|++.|+++.++.|.++|+++ |+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT-HDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT-HDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhc
Confidence 2 234567789999999999999999999999999999999999999999999999987788877765 5666899999
Q ss_pred CeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHhhc
Q 003389 412 DDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTS 457 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v~s 457 (824)
|||+||..|+||+.|+.+++ |+.|.+.-+...+..+..
T Consensus 222 Dri~VMYaG~iVE~g~~~~i--------~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEI--------FKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred ceEEEEECcEEEEeCCHHHH--------hcCCCChHHHHHHHhCcc
Confidence 99999999999999999987 456776655555555443
No 191
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=326.40 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=165.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---GKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l---~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~ 255 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+. ++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 46999999999999999999999999999999999973 331 13899999999875421 2357999999988
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+++ .||.||+.+....++.... + . ....++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~----------~---------~--------------~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN----------A---------F--------------IRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH----------H---------H--------------HHHHHHHHHHHcCCCcchhhhh
Confidence 776 5999999886433211000 0 0 0112456788888864321111
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ .++.++||+++
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHNM-QQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHhhCCEEE
Confidence 123456999999999999999999999999999999999999999999999953 67888877665 46788999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
No 192
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-37 Score=327.74 Aligned_cols=208 Identities=22% Similarity=0.338 Sum_probs=166.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCC--C---CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|.. +.+|+|.++|+++.. . ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 469999999999999999999999999999999999987411 249999999988742 1 124679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++.+||+||+.++....+... +. + ....++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRN---------KK----------D--------------LDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 999999999988643221100 00 0 011345678888874 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||
T Consensus 144 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d 215 (258)
T PRK14241 144 KPG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSD 215 (258)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999964 57888877654 47788999
Q ss_pred eEEEEc------CCeEEEecChhhHH
Q 003389 413 DIILLS------EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~------~G~iv~~G~~~~~~ 432 (824)
++++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999988763
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-37 Score=328.02 Aligned_cols=212 Identities=21% Similarity=0.323 Sum_probs=166.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|. ...+|+|+++|+++... ..++.++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 45999999999999999999999999999999999998741 12399999999887531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||.||+.++...++... .+. + ....++++++.+||.+......
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~--------~~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR--------SKA----------E--------------LDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc--------chH----------H--------------HHHHHHHHHHHcCCchhhhHHh-
Confidence 775 99999988653322100 000 0 0112456788889864211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999964 57888877654 477789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++.+|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987763
No 194
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-37 Score=323.54 Aligned_cols=212 Identities=18% Similarity=0.281 Sum_probs=166.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|++++....+|+|+++|+++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531124999999999876432 2457999999988876 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.++...++... +... ....++.+++.+||........ +...
T Consensus 94 tv~eni~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIK------------------NKDE--------------EEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCccc------------------ChHH--------------HHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 99999988643322100 0000 0112456788889853211111 2234
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ .++.++||++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEECC
Confidence 56999999999999999999999999999999999999999999999864 77888877654 4678899999999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988763
No 195
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2e-36 Score=358.08 Aligned_cols=208 Identities=23% Similarity=0.334 Sum_probs=168.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 423 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-R 423 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-c
Confidence 35899999999999999999999999999999999999997 9999999998876432 468999999987775 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++.. +.+.++..+++...+. ++. ...++...||.+|+ ..
T Consensus 424 ti~~Ni~~~~~-------------------------~~~~~~~~~a~~~~~~------~~~--i~~l~~g~~t~~~~-~~ 469 (585)
T TIGR01192 424 SIRENIRLGRE-------------------------GATDEEVYEAAKAAAA------HDF--ILKRSNGYDTLVGE-RG 469 (585)
T ss_pred cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCc------HHH--HHhccccccchhcC-CC
Confidence 99999987521 1111222222221111 111 22455667888886 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++. ..+.||+|++|++|
T Consensus 470 ~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~--~~~~~d~i~~l~~G 545 (585)
T TIGR01192 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLS--TVRNADLVLFLDQG 545 (585)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChH--HHHcCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999885 3789999888863 45779999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++..|+++++.+
T Consensus 546 ~i~~~g~~~~l~~ 558 (585)
T TIGR01192 546 RLIEKGSFQELIQ 558 (585)
T ss_pred EEEEECCHHHHHH
Confidence 9999999988753
No 196
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-37 Score=316.89 Aligned_cols=192 Identities=29% Similarity=0.418 Sum_probs=161.0
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CCCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~~~~i~yv~Q~d~~~~~lT 261 (824)
|||++|++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999887 99999999876421 11357999999998899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+...... ... ....+.++++.+||++..++.++
T Consensus 92 ~~~~l~~~~~~~~------------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~----- 130 (214)
T cd03297 92 VRENLAFGLKRKR------------NRE------------------------DRISVDELLDLLGLDHLLNRYPA----- 130 (214)
T ss_pred HHHHHHHHHhhCC------------HHH------------------------HHHHHHHHHHHcCCHhHhhcCcc-----
Confidence 9999987532110 000 01124568889999877776655
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|++ .++.++||++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999875578888877654 46778999999999999
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98775
No 197
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=8e-37 Score=321.46 Aligned_cols=205 Identities=23% Similarity=0.393 Sum_probs=161.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 46999999999999999999999999999999999999887 999999998875422 2457999999987664 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||.||+.+... ... .. ...++... .....+++.+ +++...+..+
T Consensus 91 tv~~nl~~~~~--~~~-~~----------------------~~~~~~~~------~~~~~~l~~l~~~~~~~~~~~~--- 136 (237)
T cd03252 91 SIRDNIALADP--GMS-ME----------------------RVIEAAKL------AGAHDFISELPEGYDTIVGEQG--- 136 (237)
T ss_pred hHHHHhhccCC--CCC-HH----------------------HHHHHHHH------cCcHHHHHhCcccccchhhcCC---
Confidence 99999987531 100 00 00000000 0122344554 4544444444
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++. ++ ..||++++|+
T Consensus 137 --~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 137 --AGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred --CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999863 789999887765 45 5699999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999988764
No 198
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-37 Score=325.69 Aligned_cols=211 Identities=18% Similarity=0.313 Sum_probs=165.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+++| ....+|+|+++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 4699999999999999999999999999999999999873 222489999999987421 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+.....+... +. + ....++.+++.+|+.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKN---------KK----------K--------------LQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhhhh-
Confidence 875 99999988643221100 00 0 0112445677888753211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++ .++.++||++++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i~~ 226 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVSDQTAF 226 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999864 67888887765 477889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++.+|+++++.
T Consensus 227 l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 227 FYMGELVECNDTNKMF 242 (259)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999988763
No 199
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=326.20 Aligned_cols=205 Identities=19% Similarity=0.290 Sum_probs=162.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 45999999999999999999999999999999999998631 02499999999886421 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ .||+||+.+.+...+... +. ...++.+++.+++. +..+
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~---------------------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG---------------------DM--------------DELVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH---------------------HH--------------HHHHHHHHHHhCCcchhhhhhC
Confidence 87 499999988754322100 00 01134456666663 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||
T Consensus 150 ~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 221 (269)
T PRK14259 150 ES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSD 221 (269)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 43 346999999999999999999999999999999999999999999999854 67888877654 57889999
Q ss_pred eEEEEcC-----------CeEEEecChhhHH
Q 003389 413 DIILLSE-----------GQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~-----------G~iv~~G~~~~~~ 432 (824)
++++|++ |++++.|+++++.
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999996 6799999998874
No 200
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=322.96 Aligned_cols=207 Identities=21% Similarity=0.350 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~--~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|++++ ....+|+|.++|+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 3599999999999999999999999999999999998763 212489999999987531 124579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ +||+||+.+.....+.... .+ ....++++++.+++.+ ..+
T Consensus 96 ~~-~t~~~ni~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 141 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGIKDK-------------------KK--------------LDEIVEKSLKGAALWDEVKDRLK 141 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhHHHHh
Confidence 77 8999999886433221000 00 0112345667777642 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|+ ..++.++||
T Consensus 142 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~-~~~~~~~~d 213 (250)
T PRK14240 142 KS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHN-MQQASRISD 213 (250)
T ss_pred cC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeC-HHHHHhhCC
Confidence 43 346999999999999999999999999999999999999999999999853 6788887765 457888999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 214 ~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 214 KTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 201
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-36 Score=323.11 Aligned_cols=207 Identities=18% Similarity=0.289 Sum_probs=162.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+.+ +....+|+|.++|+++... ..++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 459999999999999999999999999999999999864 2112399999999987531 123579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++. ||+||+.+.....+... ... ....+..+++.+++.. ..+
T Consensus 114 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FPK-SIYNNITHALKYAGERR-------------------KSV--------------LDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Ccc-cHHHHHHHHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCcchHHHHh
Confidence 875 99999987642211000 000 0012344667777742 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 160 ~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d 231 (268)
T PRK14248 160 SSA-----LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSD 231 (268)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCC
Confidence 443 45999999999999999999999999999999999999999999999964 57888877664 46888999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+.+++.
T Consensus 232 ~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 232 RTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 202
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.1e-36 Score=357.62 Aligned_cols=207 Identities=25% Similarity=0.405 Sum_probs=169.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|+|||.++|+||||||||||+|+|+|+++|. +|+|.+||.++++... ++.++|++|++.+++ .
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFA-A 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCcccc-c
Confidence 46999999999999999999999999999999999999997 9999999999876543 467999999877665 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++|||.++. |+.+.+++.+++...+. .+.++ .+++..||.+|+. .
T Consensus 429 Ti~~Ni~~~~-------------------------~~~~~~~~~~~l~~~~l------~~~i~--~l~~gl~t~i~~~-g 474 (576)
T TIGR02204 429 SVMENIRYGR-------------------------PDATDEEVEAAARAAHA------HEFIS--ALPEGYDTYLGER-G 474 (576)
T ss_pred cHHHHHhcCC-------------------------CCCCHHHHHHHHHHcCc------HHHHH--hCCCCCCceeCCC-C
Confidence 9999998752 11111222333222221 12222 3456678888864 5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||+++.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|++.|++ +....||+|++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~--~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRL--ATVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999853 78999988876 456789999999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
+++..|+++++.
T Consensus 551 ~~~~~g~~~~l~ 562 (576)
T TIGR02204 551 RIVAQGTHAELI 562 (576)
T ss_pred EEEeeecHHHHH
Confidence 999999988764
No 203
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=334.67 Aligned_cols=211 Identities=19% Similarity=0.311 Sum_probs=168.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
..+|+|||++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|+++... ..++.++||+|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 45999999999999999999999999999999999998631 12389999999998531 225679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.|+....+.. .++ .+ ...+..+++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~~-------------~~----------~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DRK-------------IL----------EKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hHH-------------HH----------HHHHHHHHHHcCCcchhhhhhh
Confidence 74 79999999864321110 000 00 0123456777777554445554
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.+..|||||||||+|||||+.+|+||+|||||+|||+.+...+.++|+++.+ ++|+|++.|++ ..+.+.||+|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driiv 296 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVF 296 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 34567999999999999999999999999999999999999999999999875 58888877664 467788999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999884
No 204
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-37 Score=328.86 Aligned_cols=212 Identities=26% Similarity=0.349 Sum_probs=170.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CCCcceEeeCCcccCCCCC---CceEEEEecCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-----~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~ 255 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ ...+|+|.++|+++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999999874 1128999999998754321 346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
.++.+||+||+.+......... .... .+ ....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~---------------~~~~-~~--------------~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRA---------------GALT-HR--------------DGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccccc---------------ccCC-HH--------------HHHHHHHHHHHcCcHhhhcCCc
Confidence 6677999999987532110000 0000 00 0113466888999987767665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+ .|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+..+.|+|++.|++ .+
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~ 217 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NL 217 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HH
Confidence 5 59999999999999999 599999999999999999999999999999765578888887765 46
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
+.++||++++|++|++++.|+.+++
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHH
Confidence 7789999999999999999998776
No 205
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.3e-37 Score=328.06 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=169.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCC--C
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD--L 255 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d--~ 255 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++....+ ++.++|++|+. .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999886 9999999998754322 35799999987 3
Q ss_pred CCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccc
Q 003389 256 HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt 333 (824)
+.+..|+.|++.+..... .. ... +....++++++.+||. ...++
T Consensus 102 ~~~~~t~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLLSL----------DKA------------------------ERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred cCCCCCHHHHHHHHHHhhccC----------CHH------------------------HHHHHHHHHHHHcCCChhHhhC
Confidence 667889999987643210 00 000 0012356788899996 45666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++ .||||||||++||++|+.+|++|||||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.++||+
T Consensus 148 ~~~-----~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~ 221 (268)
T PRK10419 148 RPP-----QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQR 221 (268)
T ss_pred CCc-----cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCE
Confidence 554 59999999999999999999999999999999999999999999999875578888887664 477789999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
+++|.+|++++.|+++++.
T Consensus 222 i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 222 VMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEEECCEEeeeCChhhcc
Confidence 9999999999999988754
No 206
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=322.70 Aligned_cols=208 Identities=23% Similarity=0.322 Sum_probs=164.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999887531 124569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++.+||.||+.+.....+... ..+. ...++.+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-------------------~~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-------------------RDHL--------------MEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-------------------HHHH--------------HHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987643221100 0000 01123345555543 3344
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ +.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ ++|+|+++|++ .++.++||
T Consensus 144 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 215 (252)
T PRK14272 144 TPA-----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSD 215 (252)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999999864 67888877665 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
No 207
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-37 Score=300.39 Aligned_cols=201 Identities=24% Similarity=0.350 Sum_probs=177.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+|+|||++|.+||.+.++||||||||||||++||+.+|. .|+|.+||++++.- ...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45999999999999999999999999999999999999997 99999999998753 34569999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
+|++|+.+++|++.. .|+ .++...|...||.+..+..+- .|
T Consensus 93 dNvafgL~l~Gi~k~-------~R~---------------------------~~a~q~l~~VgL~~~~~~~i~-----qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QRR---------------------------EIAHQMLALVGLEGAEHKYIW-----QL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HHH---------------------------HHHHHHHHHhCcccccccceE-----ee
Confidence 999999999887521 111 234668889999988776665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--Ce
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~ 421 (824)
||||||||.|||||+.+|++|+||||+.+||.-++.++...|-++.+..|+.+++++ |..+|..-++++++||+. |+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliT-H~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLIT-HDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHhhhheeEEecCCCce
Confidence 999999999999999999999999999999999999999999999998888887765 567788889999999985 89
Q ss_pred EEEecChh
Q 003389 422 IVYQGPRD 429 (824)
Q Consensus 422 iv~~G~~~ 429 (824)
|+..-+++
T Consensus 213 vv~~~~~d 220 (259)
T COG4525 213 VVERLPLD 220 (259)
T ss_pred eeEecCCC
Confidence 99887765
No 208
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-36 Score=317.99 Aligned_cols=207 Identities=19% Similarity=0.285 Sum_probs=162.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 469999999999999999999999999999999999865 3212489999999887421 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ .||+||+.+.....+.... ... ...+.+.++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-------------------AVL--------------DEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-------------------HHH--------------HHHHHHHHHHcCCccchhhHHh
Confidence 87 6999999886433221000 000 00123455666653 2234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|+++|++ .++.+.||
T Consensus 144 ~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d 215 (252)
T PRK14255 144 ESA-----LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISD 215 (252)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCC
Confidence 443 45999999999999999999999999999999999999999999999965 47888877664 47788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
+|++|++|+++..|+..++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 216 KTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999887763
No 209
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2e-36 Score=342.78 Aligned_cols=213 Identities=29% Similarity=0.382 Sum_probs=179.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCCcceEeeCCcccCCCCC-------CceEEEEecCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d- 254 (824)
..+++||||+|.+||++||+|.|||||||+.++|.|++++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 46999999999999999999999999999999999999876 4568999999997654322 26799999996
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 255 -~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
.+-|-+||.+-+.-..+.++... + .+....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------~------------------------~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------R------------------------AEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------H------------------------HHHHHHHHHHHHHcCCCChhhh
Confidence 45677899888876655443211 0 0112345678999999887665
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+.+++.|||||||||.||+||+.+|++|++||||++||..++.+|++.|+++.++.|.++|+++| +..-+.++|||
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITH-Dl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITH-DLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHhcCe
Confidence 56788999999999999999999999999999999999999999999999999988888888654 55578899999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+||.+|++|+.|++++++.
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEEECCEEEEecCHHHHHh
Confidence 99999999999999999864
No 210
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=321.39 Aligned_cols=212 Identities=17% Similarity=0.292 Sum_probs=166.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCCC-----CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~ 256 (824)
+++|+|+||+|++|++++|+||||||||||+++|+|+.+ |....+|+|+++|+++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21124999999998864321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+....++.... . .+ ....++.+++.+||.+...+.+.
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------K----------KK--------------LDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------H----------HH--------------HHHHHHHHHHHcCCCchhhhHhh
Confidence 875 999999876332211000 0 00 01124567888998653222221
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|+++|++. ++.++||++++
T Consensus 145 -~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~-~~~~~~d~i~~ 220 (251)
T PRK14244 145 -DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHSMK-QAKKVSDRVAF 220 (251)
T ss_pred -cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHhhcCEEEE
Confidence 23456999999999999999999999999999999999999999999999853 788888877654 77789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987763
No 211
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=321.88 Aligned_cols=211 Identities=22% Similarity=0.355 Sum_probs=165.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 46999999999999999999999999999999999998741 12489999999887531 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ +||+||+.+.....+... ... ....++++++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKS-------------------KHK--------------LDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCchhHHH-H
Confidence 77 899999988643221100 000 011234567777875321111 1
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ ++|+|+++|++ .++.++||++++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCCEEEE
Confidence 233456999999999999999999999999999999999999999999999864 57888877664 467889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++..|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
No 212
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=331.70 Aligned_cols=207 Identities=18% Similarity=0.330 Sum_probs=163.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+.+ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 459999999999999999999999999999999999864 3101399999999887432 124579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++. ||.||+.+.....+... ... ....+.++++.+|+. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGIND-------------------KKQ--------------LEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHhCCccchhhHhh
Confidence 875 99999998643221100 000 001234566777763 3334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.+ ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 178 ~~~-----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d 249 (286)
T PRK14275 178 KNA-----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSD 249 (286)
T ss_pred CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 443 46999999999999999999999999999999999999999999999864 57888877654 46788999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 213
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=322.10 Aligned_cols=207 Identities=21% Similarity=0.345 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 469999999999999999999999999999999999986 2112499999999987431 124569999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ .||+||+.+.....+... .+. ....++++++.++|.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~--------------------~~~-------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKD--------------------KEL-------------IDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCC--------------------HHH-------------HHHHHHHHHHHcCCCcchHHHhc
Confidence 75 799999987643221100 000 0012455777888842 234
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.. .+.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|+++|++ .++.++||
T Consensus 143 ~~-----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~d 214 (251)
T PRK14251 143 RN-----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNL-QQAGRISD 214 (251)
T ss_pred cC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCH-HHHHhhcC
Confidence 33 346999999999999999999999999999999999999999999999864 57888877664 46788899
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+.+++.
T Consensus 215 ~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 215 QTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988763
No 214
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-37 Score=311.95 Aligned_cols=211 Identities=22% Similarity=0.309 Sum_probs=188.1
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
+.+++.+++|+||.++||+|.+++|||||||||.+++|.|++.|+ +|+|+++|.+++... +..|||+|.+..+++.
T Consensus 11 ~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k 86 (300)
T COG4152 11 SFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPK 86 (300)
T ss_pred ccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCcc
Confidence 345678999999999999999999999999999999999999997 999999999987543 4679999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.|.|.|-|++.|+... + .....+++|+.+++......+|.
T Consensus 87 ~tv~dql~yla~LkGm~~~----------e------------------------~~~~~~~wLer~~i~~~~~~kIk--- 129 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKA----------E------------------------IQKKLQAWLERLEIVGKKTKKIK--- 129 (300)
T ss_pred CcHHHHHHHHHHhcCCcHH----------H------------------------HHHHHHHHHHhccccccccchHH---
Confidence 9999999999999887421 1 12246789999999888777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||-|.+|++.+-.+++.+|++++||||+|||||.++..+-+.+.++.. .|.|||++.| -.+.+.++||++++|++
T Consensus 130 --~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH-~Me~vEeLCD~llmL~k 205 (300)
T COG4152 130 --ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSH-RMEHVEELCDRLLMLKK 205 (300)
T ss_pred --HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecc-hHHHHHHHhhhhheecC
Confidence 4999999999999999999999999999999999999999999999986 5999999865 46789999999999999
Q ss_pred CeEEEecChhhHHHHH
Q 003389 420 GQIVYQGPRDNVLEFF 435 (824)
Q Consensus 420 G~iv~~G~~~~~~~~f 435 (824)
|+.|.+|+.+++..-|
T Consensus 206 G~~V~~G~v~~ir~~~ 221 (300)
T COG4152 206 GQTVLYGTVEDIRRSF 221 (300)
T ss_pred CceEEeccHHHHHHhc
Confidence 9999999999998644
No 215
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-36 Score=321.28 Aligned_cols=210 Identities=22% Similarity=0.312 Sum_probs=165.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|++++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 35999999999999999999999999999999999998741 12499999999987531 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+.....+...+ . . ....++++++.+++.....+..
T Consensus 118 ~~~-tv~enl~~~~~~~~~~~~---------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~- 162 (272)
T PRK14236 118 FPK-SIYENVVYGLRLQGINNR---------R----------V--------------LDEAVERSLRGAALWDEVKDRL- 162 (272)
T ss_pred Ccc-cHHHHHHHHHHhcCCCcH---------H----------H--------------HHHHHHHHHHHcCCChhHHHHh-
Confidence 876 999999886433221000 0 0 0012455677777753211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.+.||++++
T Consensus 163 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~~ 239 (272)
T PRK14236 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTAF 239 (272)
T ss_pred hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEEE
Confidence 123456999999999999999999999999999999999999999999999974 57888877664 467889999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|++++.|+++++
T Consensus 240 l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 240 MYMGKLVEYGDTDTL 254 (272)
T ss_pred EECCEEEecCCHHHH
Confidence 999999999998776
No 216
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=320.16 Aligned_cols=210 Identities=20% Similarity=0.307 Sum_probs=164.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCC-C---CCCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE-F---VPQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~-~---~~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+|. ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 46999999999999999999999999999999999998752 1238999999988742 1 1245799999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+ .||.||+.++....+... .... ...++++++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~-------------------~~~~--------------~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKD-------------------KKVL--------------DEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCc-------------------hHHH--------------HHHHHHHHHHcCCchhhhHHh-h
Confidence 7 899999987643221100 0000 012344566777643211111 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.....|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ .++.++||++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEEE
Confidence 23346999999999999999999999999999999999999999999999975 57888887765 4788899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|++++.|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
No 217
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8.6e-37 Score=355.05 Aligned_cols=208 Identities=24% Similarity=0.369 Sum_probs=172.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999987 9999999988753221 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++......... .... +....++++++.+||.+..+..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGR------IDWK------------------------KMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCc------cCHH------------------------HHHHHHHHHHHHcCCCCCccCchhh--
Confidence 9999999986432110000 0000 0011356689999999888877765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ .+++.++||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd-~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHR-LKEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999976 47888887655 4578899999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|+++..|+.+++
T Consensus 217 G~i~~~~~~~~~ 228 (501)
T PRK10762 217 GQFIAEREVADL 228 (501)
T ss_pred CEEEEecCcCcC
Confidence 999999987654
No 218
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-36 Score=322.67 Aligned_cols=205 Identities=20% Similarity=0.294 Sum_probs=161.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|++++.. ..+|+|.++|+++... ..++.++|++|+..+
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 359999999999999999999999999999999999986421 2489999999887421 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++. ||.||+.+.....+.. .+.+ ..++..++.+++. +..+
T Consensus 113 ~~~-tv~~nl~~~~~~~~~~---------------------~~~~--------------~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 113 FPK-SIYENIAFAPRANGYK---------------------GNLD--------------ELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred ccc-cHHHHHHhHHHhcCch---------------------HHHH--------------HHHHHHHHHcccchhhHHHhc
Confidence 764 9999998764321100 0000 0123345566653 2233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. +..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 157 ~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d 228 (274)
T PRK14265 157 EK-----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVAD 228 (274)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCC
Confidence 33 446999999999999999999999999999999999999999999999964 57888876654 57889999
Q ss_pred eEEEEc---------CCeEEEecChhhHH
Q 003389 413 DIILLS---------EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~---------~G~iv~~G~~~~~~ 432 (824)
++++|+ +|++++.|+++++.
T Consensus 229 ~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 229 WTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEEEecccccccccCceEEEeCCHHHHH
Confidence 999997 89999999998874
No 219
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2e-36 Score=321.67 Aligned_cols=207 Identities=23% Similarity=0.345 Sum_probs=166.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc-----cCCCCC-------CceEEEEe
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~-----~~~~~~-------~~~i~yv~ 251 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.++|.+ +..... ++.++|++
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 45899999999999999999999999999999999999887 9999999976 543221 24589999
Q ss_pred cCCC--CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-
Q 003389 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD- 328 (824)
Q Consensus 252 Q~d~--~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~- 328 (824)
|++. +.+.+|+.||+.+........ ...+ ....++++++.+|+.
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~l~l~~ 139 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAIGAR-------------------HYGN--------------IRAAAHDWLEEVEIDP 139 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHhccc-------------------chHH--------------HHHHHHHHHHHcCCCh
Confidence 9864 456679999987542111000 0000 011345688999996
Q ss_pred ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 329 ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
...++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.
T Consensus 140 ~~~~~~~~-----~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~-~~~~~ 213 (253)
T TIGR02323 140 TRIDDLPR-----AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD-LGVAR 213 (253)
T ss_pred hhhhcCch-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHH
Confidence 35666554 5999999999999999999999999999999999999999999999876557888887765 45777
Q ss_pred hhcCeEEEEcCCeEEEecChhhHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++||++++|++|++++.|+.+++.
T Consensus 214 ~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 214 LLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred HhcCEEEEEECCEEEEECCHHHHh
Confidence 899999999999999999987663
No 220
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-37 Score=355.27 Aligned_cols=209 Identities=26% Similarity=0.316 Sum_probs=172.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|||++|++|++++|+||||||||||||+|+|+++|+ ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999999861 139999999998754321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.......+. ...+ +....++++++.+||++..++.+++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-------MDYD------------------------AMYLRAQKLLAQLKLDINPATPVGN-- 143 (506)
T ss_pred CcHHHHhhhcccccccCC-------cCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 999999988653211000 0000 0011356788999998888877764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||++++|++
T Consensus 144 ---LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~-~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 144 ---LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHK-LNEVKAISDTICVIRD 218 (506)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCc-HHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999999999975 47888887655 4578889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+.+++
T Consensus 219 G~i~~~~~~~~~ 230 (506)
T PRK13549 219 GRHIGTRPAAGM 230 (506)
T ss_pred CEEeeecccccC
Confidence 999999987764
No 221
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=320.30 Aligned_cols=211 Identities=20% Similarity=0.287 Sum_probs=164.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|+++|. .+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 45999999999999999999999999999999999999874 11269999999887431 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.+....++... . .+. ...++.+++.+||.+......
T Consensus 97 ~~~-tv~enl~~~~~~~~~~~----------~---------~~~--------------~~~~~~~l~~~~l~~~l~~~~- 141 (251)
T PRK14249 97 FPK-SIFDNVAFGPRMLGTTA----------Q---------SRL--------------DEVVEKSLRQAALWDEVKDNL- 141 (251)
T ss_pred CcC-cHHHHHhhHHHhcCCCh----------h---------hHH--------------HHHHHHHHHHhCCchhhhhHh-
Confidence 875 99999988653322100 0 000 012344566666643211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .+.|+|++.|+ ..++.++||++++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~-~~~~~~~~d~i~~ 218 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHN-MQQAARASDWTGF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCC-HHHHHhhCCEEEE
Confidence 23345699999999999999999999999999999999999999999999984 37888888765 4577889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++++.|+++++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 219 LLTGDLVEYGRTGEIF 234 (251)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999988763
No 222
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=360.28 Aligned_cols=221 Identities=24% Similarity=0.291 Sum_probs=180.7
Q ss_pred HhhhcccccCcc----------cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 170 ALGLLHLVPSKK----------RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 170 ~l~~~~~~~~~~----------~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
++++.++...+. +.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i~ 389 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRID 389 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEECC
Confidence 466666655442 1246999999999999999999999999999999999999887 999999999875
Q ss_pred CCC------CCceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhc
Q 003389 240 EFV------PQRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311 (824)
Q Consensus 240 ~~~------~~~~i~yv~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~ 311 (824)
... .++.++||+|++ .+++.+||.|++.+.....+... +.+
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~---------~~~---------------------- 438 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLP---------GKA---------------------- 438 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCC---------HHH----------------------
Confidence 432 135799999986 58889999999987643322100 000
Q ss_pred cchhhhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 312 QETSLVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 312 ~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
....+.++|+.+||+ ...++.++ .|||||||||+||++|+.+|++|||||||+|||..++.++++.|+++++
T Consensus 439 --~~~~~~~~L~~~gL~~~~~~~~~~-----~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 439 --AAARVAWLLERVGLLPEHAWRYPH-----EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred --HHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 012356789999996 56676665 5999999999999999999999999999999999999999999999987
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..+.|+|+++|+ ...+.++||+|++|++|++++.|+++++.
T Consensus 512 ~~g~tvi~isHd-l~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 512 DFGIAYLFISHD-MAVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred hcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 668888887654 55788999999999999999999998874
No 223
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-36 Score=354.47 Aligned_cols=201 Identities=23% Similarity=0.353 Sum_probs=172.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998754322 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|..... + + ....++++++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~~-------------~-~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPKR-------------Q-A------------------------SMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhcccccc-------------h-H------------------------HHHHHHHHHHHcCCCccccCChhh--
Confidence 99999998853100 0 0 011345688999998888877764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|+ ..++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd-~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHK-LPEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976 47888887655 4577889999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (510)
T PRK15439 216 GTIALSGKTADLS 228 (510)
T ss_pred CEEEEecChHHcC
Confidence 9999999987653
No 224
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-36 Score=316.75 Aligned_cols=205 Identities=25% Similarity=0.411 Sum_probs=162.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT 261 (824)
.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|+++|.++.... .++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 6999999999999999999999999999999999999886 999999998765432 1356999999987776 69
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCcc
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDEM 339 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~ 339 (824)
|+||+.+...... . .. ... ... ....+..++.+ |+.+..+..+
T Consensus 92 v~enl~~~~~~~~---~----~~---------------~~~---~~~------~~~~~~~~~~l~~~l~~~~~~~~---- 136 (234)
T cd03251 92 VAENIAYGRPGAT---R----EE---------------VEE---AAR------AANAHEFIMELPEGYDTVIGERG---- 136 (234)
T ss_pred HHHHhhccCCCCC---H----HH---------------HHH---HHH------HcCcHHHHHhcccCcceeeccCC----
Confidence 9999987532110 0 00 000 000 00123455555 5655555444
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|+++|++. ++.. ||++++|++
T Consensus 137 -~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~-~d~v~~l~~ 211 (234)
T cd03251 137 -VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLS-TIEN-ADRIVVLED 211 (234)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHhh-CCEEEEecC
Confidence 46999999999999999999999999999999999999999999999963 789988887764 5544 999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|++++.|+.+++.+
T Consensus 212 G~i~~~~~~~~~~~ 225 (234)
T cd03251 212 GKIVERGTHEELLA 225 (234)
T ss_pred CeEeeeCCHHHHHH
Confidence 99999999877643
No 225
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=320.25 Aligned_cols=222 Identities=20% Similarity=0.351 Sum_probs=171.7
Q ss_pred HHhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC---CCcceEeeCCcccCCCC---
Q 003389 169 SALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNEFV--- 242 (824)
Q Consensus 169 ~~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~---~~sG~I~~nG~~~~~~~--- 242 (824)
.++++.++.+.+. ++.+|+|||++|++||+++|+||||||||||+++|+|.++|+. .+.|+|.++|+++....
T Consensus 9 ~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 3455556655443 4579999999999999999999999999999999999998860 11245555555553222
Q ss_pred CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 243 ~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
.++.++|++|++.+++.+||+||+.+.....+.. +..+ ....+++++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~-------------------~~~~--------------~~~~~~~~~ 134 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIK-------------------EKRE--------------IKKIVEECL 134 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCC-------------------CHHH--------------HHHHHHHHH
Confidence 2467999999999999999999998864321110 0000 011245678
Q ss_pred HHcCCCc----cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 003389 323 KILGLDI----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398 (824)
Q Consensus 323 ~~lgL~~----~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIi 398 (824)
+.+|+.+ ..+.. ++.||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++.+ +.|+|+
T Consensus 135 ~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiil 207 (257)
T PRK14246 135 RKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVI 207 (257)
T ss_pred HHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEE
Confidence 8888853 33443 446999999999999999999999999999999999999999999999864 588888
Q ss_pred EEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 399 si~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++|++ .++.++||++++|++|+++.+|+.+++.
T Consensus 208 vsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 208 VSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 87765 4677899999999999999999988764
No 226
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=321.66 Aligned_cols=213 Identities=23% Similarity=0.340 Sum_probs=168.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ ...+|+|.++|+++... ..++.++|++|+..+
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999999873 12479999999886421 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ +||+||+.+.....+.. +..+. ...+..+++.+++.+..+...
T Consensus 100 ~~-~tv~enl~~~~~~~~~~-------------------~~~~~--------------~~~~~~~l~~~~l~~~~~~~~- 144 (261)
T PRK14258 100 FP-MSVYDNVAYGVKIVGWR-------------------PKLEI--------------DDIVESALKDADLWDEIKHKI- 144 (261)
T ss_pred Cc-ccHHHHHHHHHHhcCCC-------------------cHHHH--------------HHHHHHHHHHcCCcchhhhHh-
Confidence 77 89999998764321110 00000 112456778888754221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.....|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++..+.|+|++.|++ .++.++||+|++
T Consensus 145 ~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~ 223 (261)
T PRK14258 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAF 223 (261)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEE
Confidence 2234569999999999999999999999999999999999999999999998764578888877665 578899999999
Q ss_pred EcC-----CeEEEecChhhHH
Q 003389 417 LSE-----GQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~-----G~iv~~G~~~~~~ 432 (824)
|++ |+++++|+++++.
T Consensus 224 l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 224 FKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EccCCCcCceEEEeCCHHHHH
Confidence 999 9999999998873
No 227
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-36 Score=292.88 Aligned_cols=200 Identities=25% Similarity=0.361 Sum_probs=174.8
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQH 253 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~ 253 (824)
.....||++|++.|++||-++|+|||||||||||-+|+|+..|+ +|+|.+.|+++.... ..+.+|+|+|.
T Consensus 20 ~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 45677999999999999999999999999999999999999997 999999999886542 23789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
..++|+||-.||+...+.+++-..+ +........|+.+||.+..+.
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~H 142 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLTH 142 (228)
T ss_pred eeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccccc
Confidence 9999999999999988777653211 011124568899999988876
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+++ .|||||+|||+||||++..|++||.||||-+||..|..+|.+.|-.+.++.|.|.|+++|+|. ...-|||
T Consensus 143 yP~-----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R 215 (228)
T COG4181 143 YPA-----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDR 215 (228)
T ss_pred Ccc-----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhh
Confidence 665 599999999999999999999999999999999999999999999999999999999988764 6678999
Q ss_pred EEEEcCCeEEE
Q 003389 414 IILLSEGQIVY 424 (824)
Q Consensus 414 iilL~~G~iv~ 424 (824)
++-|.+|+++.
T Consensus 216 ~~r~~~G~l~~ 226 (228)
T COG4181 216 QLRLRSGRLVE 226 (228)
T ss_pred eeeeecceecc
Confidence 99999999974
No 228
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.7e-36 Score=314.23 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=165.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999887 999999999875432 136799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+++|+.||+.++...... ...+ +....++++++.+||.+..++.+.
T Consensus 95 ~~~t~~~n~~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 140 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN---------LSYQ------------------------EARERARAMLEAVGLGDHLDYYPH- 140 (220)
T ss_pred CCCCHHHHHHHHHHhccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhcChh-
Confidence 999999999986432210 0000 001135668899999877777664
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|+++|++. +.++||++++|
T Consensus 141 ----~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 141 ----NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 599999999999999999999999999999999999999999999998655889999888763 56899999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
.+|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
No 229
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.3e-36 Score=316.22 Aligned_cols=195 Identities=25% Similarity=0.405 Sum_probs=156.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|..+|+ +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 46999999999999999999999999999999999999886 999999998765322 1357999999987776 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc----
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG---- 336 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg---- 336 (824)
||.||+.+..... . ...+.++++.++|.+..+..+.
T Consensus 93 tv~e~l~~~~~~~---~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 93 TLRDNITLGAPLA---D-------------------------------------DERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred hHHHHhhcCCCCC---C-------------------------------------HHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999997742110 0 0012234455555544443321
Q ss_pred --CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 337 --DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 337 --~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
......|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++. .. ++||++
T Consensus 133 ~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~~~d~v 208 (220)
T cd03245 133 QIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-DLVDRI 208 (220)
T ss_pred eecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEE
Confidence 123456999999999999999999999999999999999999999999999875 378888887765 44 799999
Q ss_pred EEEcCCeEEEec
Q 003389 415 ILLSEGQIVYQG 426 (824)
Q Consensus 415 ilL~~G~iv~~G 426 (824)
++|++|++++.|
T Consensus 209 ~~l~~g~i~~~~ 220 (220)
T cd03245 209 IVMDSGRIVADG 220 (220)
T ss_pred EEEeCCeEeecC
Confidence 999999998764
No 230
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.3e-36 Score=311.00 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=157.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 46999999999999999999999999999999999999887 999999999854211 23579999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.+.....+.. +. +....++++++.+||++..++.+.
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 133 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLS----------KK------------------------EKREKKKEALEKVGLNLKLKQKIY 133 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCchhhhcCChh
Confidence 99999999999864322110 00 001134668899999887777665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. ..+.||++++
T Consensus 134 -----~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~ 205 (206)
T TIGR03608 134 -----ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIE 205 (206)
T ss_pred -----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEe
Confidence 4999999999999999999999999999999999999999999999976 4889999888764 3468999987
Q ss_pred E
Q 003389 417 L 417 (824)
Q Consensus 417 L 417 (824)
|
T Consensus 206 l 206 (206)
T TIGR03608 206 L 206 (206)
T ss_pred C
Confidence 5
No 231
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.3e-36 Score=353.83 Aligned_cols=230 Identities=23% Similarity=0.314 Sum_probs=174.2
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++.....+|+.++++.+++.-. .+............++.|+|+++.++
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~~~I~~~~vsf~Y~---------------------------- 345 (529)
T TIGR02868 297 LTRVRAAAERIEEVTGAKGPRPE---GVVPAAGALGLGKPTLELRDLSFGYP---------------------------- 345 (529)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCC---CCCCCCcccCCCCceEEEEEEEEecC----------------------------
Confidence 34566677788777766544100 00000000111234688888887631
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+++++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|.+||.++++. . ++.++||+|+
T Consensus 346 -----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 346 -----GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSL-QDELRRRISVFAQD 416 (529)
T ss_pred -----CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhH-HHHHHhheEEEccC
Confidence 1234999999999999999999999999999999999999997 99999999998876 4 4689999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+|+. ||+|||.++. |+.+.+++.+++...+.++ . .-.|++..||
T Consensus 417 ~~lF~~-TI~eNI~~g~-------------------------~~~~~e~i~~al~~a~l~~------~--i~~lp~GldT 462 (529)
T TIGR02868 417 AHLFDT-TVRDNLRLGR-------------------------PDATDEELWAALERVGLAD------W--LRSLPDGLDT 462 (529)
T ss_pred cccccc-cHHHHHhccC-------------------------CCCCHHHHHHHHHHcCCHH------H--HHhCcccccc
Confidence 887765 9999998852 2222334444544443222 1 2357788999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+|+. ...||||||||++|||||+++|++|+||||||+||+.++..|.+.|+++. .++|+|++.|++
T Consensus 463 ~ige~-G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 463 VLGEG-GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred hhccc-cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 99974 45699999999999999999999999999999999999999999999875 378999988863
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=321.56 Aligned_cols=211 Identities=19% Similarity=0.272 Sum_probs=167.3
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHD 254 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d 254 (824)
+++.+|+|+|++|++|++++|+||||||||||+++|+|+++|. ...+|+|+++|+++... ..++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 3457999999999999999999999999999999999999761 11489999999987431 1245699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.++ .+||.||+.++....+.. .+ ....++++++.++|.+..+..
T Consensus 99 ~~~-~~tv~enl~~~~~~~~~~---------------------~~--------------~~~~~~~~l~~~~l~~~i~~~ 142 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNRYK---------------------GD--------------LGDRVKHALQGAALWDEVKDK 142 (261)
T ss_pred ccc-cccHHHHHHHHHhhcCch---------------------HH--------------HHHHHHHHHHHcCCchhhhhh
Confidence 777 599999998875432110 00 001245577888875433222
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.+ ...+.||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++.+ +.|+|++.|++ .++.++||++
T Consensus 143 ~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~--~~tii~isH~~-~~i~~~~d~v 218 (261)
T PRK14263 143 LK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--DYTIALVTHNM-QQAIRVADTT 218 (261)
T ss_pred hh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEE
Confidence 22 34557999999999999999999999999999999999999999999999953 67888876654 4688999999
Q ss_pred EEEc--------CCeEEEecChhhHH
Q 003389 415 ILLS--------EGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~--------~G~iv~~G~~~~~~ 432 (824)
++|+ +|++++.|+++++.
T Consensus 219 ~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 219 AFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEEecccccccCCceEEEeCCHHHHH
Confidence 9996 89999999988764
No 233
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.4e-36 Score=308.82 Aligned_cols=171 Identities=40% Similarity=0.724 Sum_probs=152.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|++ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 876 9999999998764333567999999998899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..+ +.
T Consensus 99 ~~~~i~~~~~-----------------------------------------------------~~--------------- 110 (194)
T cd03213 99 VRETLMFAAK-----------------------------------------------------LR--------------- 110 (194)
T ss_pred HHHHHHHHHH-----------------------------------------------------hc---------------
Confidence 9999976310 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++++|||||+|||..++..+.+.|+++.+ .++|+|++.|++..++.++||++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 3999999999999999999999999999999999999999999999875 488999998887667888999999999999
Q ss_pred EEEec
Q 003389 422 IVYQG 426 (824)
Q Consensus 422 iv~~G 426 (824)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98764
No 234
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=323.22 Aligned_cols=225 Identities=24% Similarity=0.337 Sum_probs=173.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCC----CCceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV----PQRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~ 257 (824)
+++|+|||++|++||+++|+||||||||||+++|+|+++|. ...+|+|.++|+++.... .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 56999999999999999999999999999999999998751 124999999998875431 246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+ +||+||+.+........ +..+ ....+..+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLV-------------------PRKE--------------FRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCC-------------------CHHH--------------HHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 79999998764221100 0000 0012345678888865332221 1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.++||++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 23456999999999999999999999999999999999999999999999875 47888877654 5788899999999
Q ss_pred cCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHH
Q 003389 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~ 454 (824)
++|++++.|+++++.+ .|.+...++|+-+
T Consensus 236 ~~G~i~~~g~~~~~~~--------~~~~~~~~~~~~~ 264 (276)
T PRK14271 236 FDGRLVEEGPTEQLFS--------SPKHAETARYVAG 264 (276)
T ss_pred ECCEEEEeCCHHHHHh--------CcCcHHHHHHHhh
Confidence 9999999999887742 3444445555544
No 235
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-36 Score=315.16 Aligned_cols=205 Identities=22% Similarity=0.339 Sum_probs=159.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 91 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG- 91 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-
Confidence 35999999999999999999999999999999999999886 999999998775432 24569999999877765
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.+...... . .+....++. ...+..++.+ |++...+..
T Consensus 92 tv~~~~~~~~~~~~---~-------------------~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~---- 136 (229)
T cd03254 92 TIMENIRLGRPNAT---D-------------------EEVIEAAKE---------AGAHDFIMKLPNGYDTVLGEN---- 136 (229)
T ss_pred HHHHHHhccCCCCC---H-------------------HHHHHHHHH---------hChHHHHHhCcccccCHhhcC----
Confidence 99999987532100 0 000000000 0112233333 444333333
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .+.|+|+++|++. ++ ..||++++|+
T Consensus 137 -~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~-~~-~~~d~i~~l~ 211 (229)
T cd03254 137 -GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLS-TI-KNADKILVLD 211 (229)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHH-HH-hhCCEEEEEe
Confidence 45699999999999999999999999999999999999999999999985 3789999887764 44 4699999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+.+++.
T Consensus 212 ~g~~~~~~~~~~~~ 225 (229)
T cd03254 212 DGKIIEEGTHDELL 225 (229)
T ss_pred CCeEEEeCCHHHHH
Confidence 99999999877654
No 236
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=321.02 Aligned_cols=207 Identities=20% Similarity=0.314 Sum_probs=164.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC--CcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR--ASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~--~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+|+||||||||+++|+|+++++.. .+|+|.++|+++... ..++.++|++|++.+
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 4599999999999999999999999999999999999875311 389999999887431 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 332 (824)
++ +||+||+.++...++. .++.+. ...++.+++.+|+. +..+
T Consensus 100 ~~-~tv~enl~~~~~~~~~-------------------~~~~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 145 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAK-------------------LPQADL--------------DEIVESALKGAALWQEVKDKLN 145 (259)
T ss_pred CC-ccHHHHHHHHHHHhcC-------------------CCHHHH--------------HHHHHHHHHHcCCcchhhhHhc
Confidence 87 8999999876432210 000000 11234566777773 2334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+. ++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|+|++.|+ .+++.++||
T Consensus 146 ~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~-~~~i~~~~d 217 (259)
T PRK14260 146 KS-----ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHN-MQQATRVSD 217 (259)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCC-HHHHHHhcC
Confidence 43 446999999999999999999999999999999999999999999999864 5788887765 457889999
Q ss_pred eEEEEc-----CCeEEEecChhhHH
Q 003389 413 DIILLS-----EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~-----~G~iv~~G~~~~~~ 432 (824)
++++|+ +|+++++|+++++.
T Consensus 218 ~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 218 FTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred eEEEEeccCCCCceEEEeCCHHHHh
Confidence 999998 59999999998863
No 237
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=353.83 Aligned_cols=211 Identities=25% Similarity=0.282 Sum_probs=173.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+||||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 46999999999999999999999999999999999999887 9999999998764322 2469999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++....... ... ...... +....++++++.+||.+..++.+++
T Consensus 95 ~tv~e~l~~~~~~~~~~--~~~-~~~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKKV--CGV-NIIDWR------------------------EMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhcccccccc--ccc-cccCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 99999998753210000 000 000000 0112356789999999888877764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|+ ..++.++||++++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd-~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHK-LAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999976 48888887654 5578889999999999
Q ss_pred CeEEEecChhhH
Q 003389 420 GQIVYQGPRDNV 431 (824)
Q Consensus 420 G~iv~~G~~~~~ 431 (824)
|++++.|+++++
T Consensus 221 G~i~~~g~~~~~ 232 (510)
T PRK09700 221 GSSVCSGMVSDV 232 (510)
T ss_pred CEEeeecchhhC
Confidence 999999998765
No 238
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.4e-36 Score=318.46 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=166.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV 262 (824)
+|+|||++|++|++++|+||||||||||+++|+|+++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999974 3 8999999998764332 3468999999888888999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.+.... +.. .. + ....++++++.+||.+..++.++ .
T Consensus 87 ~~nl~~~~~~-~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (248)
T PRK03695 87 FQYLTLHQPD-KTR----------TE----------A--------------VASALNEVAEALGLDDKLGRSVN-----Q 126 (248)
T ss_pred HHHHHhcCcc-CCC----------cH----------H--------------HHHHHHHHHHHcCCHhHhcCCcc-----c
Confidence 9999875321 000 00 0 01134668889999877777665 4
Q ss_pred CCHHHHHHHHHHHHHHc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~-------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+. .++.++||+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999975 478888877654 47889999999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998765
No 239
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=318.60 Aligned_cols=211 Identities=20% Similarity=0.294 Sum_probs=164.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.++. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 46999999999999999999999999999999999987632 11389999999987542 123569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||+||+.|..+..+... ..+. ...+..+++.++|.+...+..
T Consensus 99 ~~~-tv~eni~~~~~~~~~~~-------------------~~~~--------------~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FPK-SIYENVAYGPRIHGEKN-------------------KKTL--------------DTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Ccc-cHHHHHHhhHHhcCCCC-------------------HHHH--------------HHHHHHHHHHhcCchhhHHHh-
Confidence 875 99999998754321100 0000 012344667777643211111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|++ .++.++||++++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~~ 220 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTGF 220 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEEE
Confidence 123446999999999999999999999999999999999999999999999975 57888877654 467789999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++..|+.+++.
T Consensus 221 l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 221 MYLGKLIEFDKTTQIF 236 (253)
T ss_pred EECCEEEEcCCHHHHH
Confidence 9999999999988763
No 240
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.4e-36 Score=315.73 Aligned_cols=199 Identities=22% Similarity=0.354 Sum_probs=162.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.++|++|++.+++ .
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 95 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D 95 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCHHHHHhccEEEeccccccc-c
Confidence 46999999999999999999999999999999999999887 9999999988754322 357999999988776 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 339 (824)
||+||+.+.....+.. . ....++.+++.+||. ...++.++
T Consensus 96 tv~enl~~~~~~~~~~----------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 136 (225)
T PRK10247 96 TVYDNLIFPWQIRNQQ----------------------P--------------DPAIFLDDLERFALPDTILTKNIA--- 136 (225)
T ss_pred cHHHHHHhHHhhcCCC----------------------h--------------HHHHHHHHHHHcCCChHHhcCCcc---
Confidence 9999998753321100 0 001245678899995 45666655
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc-
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS- 418 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~- 418 (824)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.|+|++.|++. ++ ..||++++|+
T Consensus 137 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~ 212 (225)
T PRK10247 137 --ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQP 212 (225)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEec
Confidence 599999999999999999999999999999999999999999999998755788888877654 45 4699999994
Q ss_pred CCeEEEecChh
Q 003389 419 EGQIVYQGPRD 429 (824)
Q Consensus 419 ~G~iv~~G~~~ 429 (824)
++..+.+|.++
T Consensus 213 ~~~~~~~~~~~ 223 (225)
T PRK10247 213 HAGEMQEARYE 223 (225)
T ss_pred ccchHhhhhhc
Confidence 56666777654
No 241
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.1e-36 Score=316.28 Aligned_cols=206 Identities=25% Similarity=0.353 Sum_probs=160.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46999999999999999999999999999999999999887 9999999987653221 356999999987765 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.+...... . .+ .+ +.... ......++.+ ++....+..
T Consensus 92 tv~e~l~~~~~~~~---~----~~---------------~~---~~~~~------~~~~~~~~~l~~~~~~~~~~~---- 136 (238)
T cd03249 92 TIAENIRYGKPDAT---D----EE---------------VE---EAAKK------ANIHDFIMSLPDGYDTLVGER---- 136 (238)
T ss_pred hHHHHhhccCCCCC---H----HH---------------HH---HHHHH------cChHHHHHhhccccceeeccC----
Confidence 99999987532110 0 00 00 00000 0012233333 444334433
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .++|+|++.|++. ++. .||++++|+
T Consensus 137 -~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~ 211 (238)
T cd03249 137 -GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQ 211 (238)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 35699999999999999999999999999999999999999999999986 4789888877654 554 899999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877654
No 242
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.3e-36 Score=384.59 Aligned_cols=257 Identities=20% Similarity=0.252 Sum_probs=200.0
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCC-C-CCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI-E-IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~-~-~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
+.....+||+.+..+.++|.... ..+.... . +....++|+|+++.+..
T Consensus 1200 e~~~~sveRi~e~~~~~~E~~~~----~~~~~~~~~wp~~g~I~f~nVsf~Y~~-------------------------- 1249 (1622)
T PLN03130 1200 ENSLNAVERVGTYIDLPSEAPLV----IENNRPPPGWPSSGSIKFEDVVLRYRP-------------------------- 1249 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCccccc----ccCCCCCCCCCCCCcEEEEEEEEEeCC--------------------------
Confidence 45667788888887766552100 0000011 1 11346899999876521
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
+..++|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... ++.+++|+|
T Consensus 1250 ------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l~~LR~~IsiVpQ 1320 (1622)
T PLN03130 1250 ------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGLMDLRKVLGIIPQ 1320 (1622)
T ss_pred ------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCHHHHHhccEEECC
Confidence 1235999999999999999999999999999999999999997 9999999999987643 578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.+|.. ||||||++... .+.+++++++...+.+. . +-.|+...|
T Consensus 1321 dp~LF~G-TIreNLd~~~~--------------------------~tdeei~~Al~~a~l~~------~--I~~lp~GLd 1365 (1622)
T PLN03130 1321 APVLFSG-TVRFNLDPFNE--------------------------HNDADLWESLERAHLKD------V--IRRNSLGLD 1365 (1622)
T ss_pred CCccccc-cHHHHhCcCCC--------------------------CCHHHHHHHHHHcCcHH------H--HHhCccccC
Confidence 9888865 99999976410 12234455554443322 1 224677889
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
|.||+ .+..||||||||++|||||+++|+||+||||||+||+.|...|.+.|++..+ ++|+|++.|.. ++...||
T Consensus 1366 t~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~--~~TvI~IAHRL--~tI~~~D 1440 (1622)
T PLN03130 1366 AEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRL--NTIIDCD 1440 (1622)
T ss_pred ccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEeCCh--HHHHhCC
Confidence 99996 4556999999999999999999999999999999999999999999999753 78998887765 4667799
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|++|++|+|+++|+++++++
T Consensus 1441 rIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1441 RILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999874
No 243
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=323.98 Aligned_cols=206 Identities=24% Similarity=0.351 Sum_probs=165.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lT 261 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.....++.++|++|++.+. ...+
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 46999999999999999999999999999999999999987 999999998875432234699999987542 2347
Q ss_pred HHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 262 VRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 262 V~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
++|++.++.... +... .+..+ ....++++++.+||.+..++.+++
T Consensus 97 ~~~~i~~~~~~~~~~~~-----------------~~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~~--- 142 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLR-----------------RAKKR--------------DRQIVTAALARVDMVEFRHRQIGE--- 142 (272)
T ss_pred hhhheeccccccccccc-----------------CCCHH--------------HHHHHHHHHHHcCChhHhcCCccc---
Confidence 899886542100 0000 00000 011345678899998888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ .++.++||+++++ +|
T Consensus 143 --LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G 217 (272)
T PRK15056 143 --LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KG 217 (272)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CC
Confidence 999999999999999999999999999999999999999999999976 478888876654 4778899999887 89
Q ss_pred eEEEecChhhH
Q 003389 421 QIVYQGPRDNV 431 (824)
Q Consensus 421 ~iv~~G~~~~~ 431 (824)
++++.|+++++
T Consensus 218 ~i~~~g~~~~~ 228 (272)
T PRK15056 218 TVLASGPTETT 228 (272)
T ss_pred EEEeecCHHhc
Confidence 99999998765
No 244
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6e-36 Score=384.30 Aligned_cols=258 Identities=21% Similarity=0.246 Sum_probs=198.7
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCC-cEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIP-KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p-~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
+.....+||+.+..+.++|.... .+ ........| ..+++|+|+++.+..
T Consensus 1197 ~~~~~s~eRi~e~~~~~~e~~~~--~~-~~~~~~~~p~~g~I~f~nVsf~Y~~--------------------------- 1246 (1495)
T PLN03232 1197 ENSLNSVERVGNYIDLPSEATAI--IE-NNRPVSGWPSRGSIKFEDVHLRYRP--------------------------- 1246 (1495)
T ss_pred HHHHHHHHHHHHHhcCCcccccc--cc-CCCCCCCCCCCCcEEEEEEEEEECC---------------------------
Confidence 34566778888888766652100 00 000000112 346889999876521
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+..++|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+|+
T Consensus 1247 -----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~~lR~~i~iVpQd 1318 (1495)
T PLN03232 1247 -----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLTDLRRVLSIIPQS 1318 (1495)
T ss_pred -----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHHHHHhhcEEECCC
Confidence 1245999999999999999999999999999999999999997 9999999999877543 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+|+. ||||||++... .+.+++++++...+.+. . .-.+++..||
T Consensus 1319 p~LF~g-TIr~NL~~~~~--------------------------~sdeei~~al~~a~l~~------~--I~~lp~GLdt 1363 (1495)
T PLN03232 1319 PVLFSG-TVRFNIDPFSE--------------------------HNDADLWEALERAHIKD------V--IDRNPFGLDA 1363 (1495)
T ss_pred CeeeCc-cHHHHcCCCCC--------------------------CCHHHHHHHHHHcCCHH------H--HHhCcCCCCc
Confidence 888865 99999976410 11233444444333222 1 2246677899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+ .+..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|++.|+. ++...||+
T Consensus 1364 ~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~Dr 1438 (1495)
T PLN03232 1364 EVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL--NTIIDCDK 1438 (1495)
T ss_pred eecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH--HHHHhCCE
Confidence 9986 455699999999999999999999999999999999999999999999875 378999887765 56677999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++++
T Consensus 1439 IlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1439 ILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999863
No 245
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=322.45 Aligned_cols=206 Identities=17% Similarity=0.327 Sum_probs=160.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|+|||||||||++|+|+++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 459999999999999999999999999999999999987 2112499999999887421 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC----Ccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL----~~~~d 332 (824)
++ .||+||+.++.+..+.... ... ...+..+++.+++ .+..+
T Consensus 117 ~~-~tv~eni~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~~~~~l~~~~~ 162 (271)
T PRK14238 117 FP-KSIYDNVTYGPKIHGIKDK-------------------KTL--------------DEIVEKSLRGAAIWDELKDRLH 162 (271)
T ss_pred cc-ccHHHHHHHHHHhcCCCcH-------------------HHH--------------HHHHHHHHHHcCCcchHHHHHh
Confidence 77 4999999886432211000 000 0112334555543 22233
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.. ++.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|+ ..++.++||
T Consensus 163 ~~-----~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~-~~~i~~~~d 234 (271)
T PRK14238 163 DN-----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHN-MQQAARISD 234 (271)
T ss_pred cC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcC-HHHHHHhCC
Confidence 33 456999999999999999999999999999999999999999999999864 5788887665 446788999
Q ss_pred eEEEEcCCeEEEecChhhH
Q 003389 413 DIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~ 431 (824)
++++|++|++++.|+++++
T Consensus 235 ~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 235 KTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998876
No 246
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.7e-36 Score=351.07 Aligned_cols=221 Identities=22% Similarity=0.303 Sum_probs=177.0
Q ss_pred HhhhcccccCcc----------cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 170 ALGLLHLVPSKK----------RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 170 ~l~~~~~~~~~~----------~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
++++.++...+. +.+.+|+|||++|++|++++|+||||||||||+|+|+|+++ . +|+|+++|+++.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i~ 350 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPLH 350 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEcc
Confidence 355566654442 13569999999999999999999999999999999999984 4 899999998875
Q ss_pred CCCC------CceEEEEecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhc
Q 003389 240 EFVP------QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311 (824)
Q Consensus 240 ~~~~------~~~i~yv~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~ 311 (824)
.... ++.++|++|+. .+++.+||.||+.++....+.. ..+.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~--------~~~~----------------------- 399 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPT--------LSAA----------------------- 399 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcccc--------CChH-----------------------
Confidence 4321 35699999986 4788899999998864321100 0000
Q ss_pred cchhhhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 312 QETSLVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 312 ~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
+....++++|+.+||+ ...++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 400 -~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 400 -QREQQVIAVMEEVGLDPETRHRYPA-----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred -HHHHHHHHHHHHcCCCHHHHhcCCc-----cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence 0012356688999997 46777665 4999999999999999999999999999999999999999999999987
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..++|+|+++| ...++.++||++++|++|+++..|+++++.
T Consensus 474 ~~~~tvi~vsH-d~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 474 KHQLAYLFISH-DLHVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred hhCCEEEEEeC-CHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 55788888765 456788899999999999999999988773
No 247
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=314.13 Aligned_cols=196 Identities=27% Similarity=0.436 Sum_probs=171.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----C--CCceEEEEecCCCCCCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----V--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~--~~~~i~yv~Q~d~~~~~lT 261 (824)
++++.++.-.+|||-|+||||||||+|+|+|+.+|+ +|.|.+||..+... . .+|.+||||||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 678888776899999999999999999999999998 99999999866321 1 2588999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+.||.|+...- .....+++.+.||++|..+.++.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~P~----- 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRYPG----- 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhCCC-----
Confidence 999999975321 00124668889999999998776
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+|||||++.|++|+||||.+.||-..+.+|+-.|.+++++.+.-|+.++| -..|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSH-S~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH-SLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEec-CHHHHHhhhheEEEecCCe
Confidence 499999999999999999999999999999999999999999999999988888888765 4569999999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
+...|+.+++.+
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998853
No 248
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-36 Score=305.69 Aligned_cols=170 Identities=39% Similarity=0.679 Sum_probs=149.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|+++++|++++|+|||||||||||++|+|+.. |+ +|+|.++|+++. ...++.++|++|++.+++.+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~t 95 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLT 95 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehH-HHhhhceEEecccCccccCCc
Confidence 469999999999999999999999999999999999863 44 999999999875 223467999999998999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.++.. ++
T Consensus 96 v~~~l~~~~~--------------------------------------------------~~------------------ 107 (192)
T cd03232 96 VREALRFSAL--------------------------------------------------LR------------------ 107 (192)
T ss_pred HHHHHHHHHH--------------------------------------------------Hh------------------
Confidence 9999976410 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC-C
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-G 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~-G 420 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .++|+|+++|++..++.+.||++++|++ |
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 3999999999999999999999999999999999999999999999876 4889999888865457788999999999 9
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999876
No 249
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=312.63 Aligned_cols=211 Identities=21% Similarity=0.311 Sum_probs=165.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+.+ |....+|+|.+||+++... ..++.++|++|++.+
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 459999999999999999999999999999999999865 2112389999999987531 124679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++. ||.||+.+.....+...+ + . ....+.++++.+||........
T Consensus 96 ~~~-t~~~nl~~~~~~~~~~~~----------~---------~--------------~~~~~~~~l~~~~l~~~l~~~~- 140 (250)
T PRK14266 96 FPK-SIFDNVAYGLRIHGEDDE----------D---------F--------------IEERVEESLKAAALWDEVKDKL- 140 (250)
T ss_pred Ccc-hHHHHHHhHHhhcCCCCH----------H---------H--------------HHHHHHHHHHHcCCchhHHHHH-
Confidence 875 999999876432211000 0 0 0112455677777743221111
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+...+.||||||||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|++.|++ .++.+.+|++++
T Consensus 141 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~~ 217 (250)
T PRK14266 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTSF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEEE
Confidence 233456999999999999999999999999999999999999999999999953 67888887665 478889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++++|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 218 FLNGEIIESGLTDQIF 233 (250)
T ss_pred EECCeEEEeCCHHHHH
Confidence 9999999999988763
No 250
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-36 Score=320.02 Aligned_cols=205 Identities=19% Similarity=0.304 Sum_probs=161.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCC--C---CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~--~---~~~~~i~yv~Q~d~~ 256 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|++++. ...+|+|.++|+++.. . ..++.++|++|++.+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 46999999999999999999999999999999999997631 1248999999988742 1 124569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++ .||.||+.+.....+.. .+ . ...++.+++.+++.+ ..+
T Consensus 103 ~~-~tv~enl~~~~~~~~~~------~~---------------~--------------~~~~~~~l~~~~l~~~l~~~~~ 146 (264)
T PRK14243 103 FP-KSIYDNIAYGARINGYK------GD---------------M--------------DELVERSLRQAALWDEVKDKLK 146 (264)
T ss_pred cc-ccHHHHHHhhhhhcCcc------hH---------------H--------------HHHHHHHHHHhCchhhHHHHhc
Confidence 77 49999998864322110 00 0 001233455555532 223
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.. ++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|+ .+++.++||
T Consensus 147 ~~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~-~~~~~~~~d 218 (264)
T PRK14243 147 QS-----GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHN-MQQAARVSD 218 (264)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecC-HHHHHHhCC
Confidence 33 446999999999999999999999999999999999999999999999975 4788887655 558889999
Q ss_pred eEEEEc---------CCeEEEecChhhHH
Q 003389 413 DIILLS---------EGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~---------~G~iv~~G~~~~~~ 432 (824)
++++|+ +|++++.|+++++.
T Consensus 219 ~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 219 MTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEEEecccccccccCceEEEeCCHHHHH
Confidence 999998 89999999998874
No 251
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=339.49 Aligned_cols=209 Identities=28% Similarity=0.373 Sum_probs=175.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCC--C
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD--L 255 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d--~ 255 (824)
...+++||||.|++||+++|+|+||||||||.++|+|+++|+ +|+|.++|.+.+.. ..++.+-+|+||+ .
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 356899999999999999999999999999999999999997 99999999873211 1135788888886 6
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+.|.+||+++|.-.....+.... .+...+++++|+..||+.. .
T Consensus 380 LnPr~tV~~~i~epL~~~~~~~~---------------------------------~~~~~rv~~ll~~VgL~~~----~ 422 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGGGSG---------------------------------AERRARVAELLELVGLPPE----F 422 (539)
T ss_pred cCccccHHHHHHhHHhhhcccch---------------------------------HHHHHHHHHHHHHcCCCHH----H
Confidence 78999999999887654432110 0112257789999999842 2
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
.+.++++||||||||++|||||+.+|++|++|||||.||+.++.+|+++|+++.++.|.|.+++. |+..-+..+||||+
T Consensus 423 l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfIS-HDl~vV~~i~drv~ 501 (539)
T COG1123 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFIS-HDLAVVRYIADRVA 501 (539)
T ss_pred HhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEe-CCHHHHHhhCceEE
Confidence 33455679999999999999999999999999999999999999999999999998899988865 66778999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
||++|+||+.||.+++.
T Consensus 502 vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 502 VMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998884
No 252
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-36 Score=322.69 Aligned_cols=204 Identities=20% Similarity=0.312 Sum_probs=163.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++++.. ..+|+|.++|.++... ..++.++|++|+..+
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 459999999999999999999999999999999999986310 1399999999886431 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc----ccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 332 (824)
++. ||.||+.+.....+.. .+ ....++.+++.+||.. ..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~---------------------~~--------------~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 132 FPK-SIYDNVAYGLKIQGYD---------------------GD--------------IDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred CcC-CHHHHHHHHHHHcCCc---------------------HH--------------HHHHHHHHHHHcCCCchhHHHHh
Confidence 775 9999998864332210 00 0112456778888753 334
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ +.|+|++.|+ ..++.++||
T Consensus 176 ~~~-----~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~-~~~i~~~~d 247 (285)
T PRK14254 176 SSG-----LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHN-MQQAARISD 247 (285)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCC-HHHHHhhcC
Confidence 444 46999999999999999999999999999999999999999999999975 4688887665 457788999
Q ss_pred eEE-EEcCCeEEEecChhhH
Q 003389 413 DII-LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 413 ~ii-lL~~G~iv~~G~~~~~ 431 (824)
+++ +|++|+++..|+.+++
T Consensus 248 ri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 248 KTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred EEEEEeeCCEEEEeCCHHHH
Confidence 975 6799999999998775
No 253
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-35 Score=312.67 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=158.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|. +|+|.+||.++.... .++.++|++|+..+++ .
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 45999999999999999999999999999999999999887 999999998875432 1356999999987775 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.+..... .. .+... ..... .....++.+ |++...+.
T Consensus 90 tv~~nl~~~~~~~--~~--------------------~~~~~---~~~~~------~l~~~~~~l~~~~~~~~~~----- 133 (236)
T cd03253 90 TIGYNIRYGRPDA--TD--------------------EEVIE---AAKAA------QIHDKIMRFPDGYDTIVGE----- 133 (236)
T ss_pred hHHHHHhhcCCCC--CH--------------------HHHHH---HHHHc------CcHHHHHhccccccchhhc-----
Confidence 9999998753210 00 00000 00000 012223333 33333332
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
..+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++. .||++++|+
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~-~~d~~~~l~ 209 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLS-TIV-NADKIIVLK 209 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHH-hCCEEEEEE
Confidence 2456999999999999999999999999999999999999999999999864 789888877664 454 599999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+.+++.
T Consensus 210 ~g~i~~~~~~~~~~ 223 (236)
T cd03253 210 DGRIVERGTHEELL 223 (236)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999877654
No 254
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.2e-35 Score=319.34 Aligned_cols=199 Identities=25% Similarity=0.265 Sum_probs=161.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
..+|+|||++|++||+++|+||||||||||+++|+|+++ . +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~ 91 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-G 91 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-h
Confidence 358999999999999999999999999999999999986 4 899999999876432 2467999999998887 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-------ccccc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-------ICADT 333 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-------~~~dt 333 (824)
||+||+...... . .++ +.+.++.+||. ...++
T Consensus 92 tv~~nl~~~~~~---~-----------------------~~~---------------~~~~l~~~gL~~~~~~~p~~l~~ 130 (275)
T cd03289 92 TFRKNLDPYGKW---S-----------------------DEE---------------IWKVAEEVGLKSVIEQFPGQLDF 130 (275)
T ss_pred hHHHHhhhccCC---C-----------------------HHH---------------HHHHHHHcCCHHHHHhCcccccc
Confidence 999999642110 0 001 11233344443 34455
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+++ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++. .++|+|++.|++ ..+ ..||+
T Consensus 131 ~~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i-~~~dr 205 (275)
T cd03289 131 VLVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAM-LECQR 205 (275)
T ss_pred eecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHH-HhCCE
Confidence 5654 456799999999999999999999999999999999999999999999874 378988887765 444 45999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|++++.|+++++..
T Consensus 206 i~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 206 FLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEEecCCeEeecCCHHHHhh
Confidence 99999999999999999864
No 255
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.6e-35 Score=314.35 Aligned_cols=212 Identities=21% Similarity=0.290 Sum_probs=166.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCCcceEeeCCcccCCCCC---Cc-eEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP---QR-TCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~--l~~~~~~sG~I~~nG~~~~~~~~---~~-~i~yv~Q~d~~~ 257 (824)
+.+|+|||++|++||+++|+||||||||||+++|+|+ ++|. +|+|.++|.++....+ .+ .++|++|++.++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~ 96 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLEPEERAHLGIFLAFQYPIEI 96 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCChhhhheeeEEEEecccccc
Confidence 4599999999999999999999999999999999998 4565 9999999998765332 12 478999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+|+.+++.+........ ... ++.+..+ ....+.++++.+||. ...++.++
T Consensus 97 ~~~~~~~~l~~~~~~~~~~---------------~~~-~~~~~~~-----------~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 97 PGVSNADFLRLAYNSKRKF---------------QGL-PELDPLE-----------FLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred ccccHHHHHHHhhhhhhcc---------------ccc-ccccHHH-----------HHHHHHHHHHHcCCchhhhccccc
Confidence 9999999998753211000 000 0000000 011345678899997 35555553
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|+++|++. .+... ||+++
T Consensus 150 ----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~-~~~~~~~d~i~ 223 (252)
T CHL00131 150 ----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQR-LLDYIKPDYVH 223 (252)
T ss_pred ----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhhCCEEE
Confidence 14999999999999999999999999999999999999999999999875 4789988877644 45555 89999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|++++.|+++.+
T Consensus 224 ~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 224 VMQNGKIIKTGDAELA 239 (252)
T ss_pred EEeCCEEEEecChhhh
Confidence 9999999999998843
No 256
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.9e-36 Score=383.64 Aligned_cols=222 Identities=25% Similarity=0.352 Sum_probs=188.8
Q ss_pred hhhcccccCccc-ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceE
Q 003389 171 LGLLHLVPSKKR-SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTC 247 (824)
Q Consensus 171 l~~~~~~~~~~~-~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i 247 (824)
+.+.++.+.+++ ++.+|+|||+.|++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhhhE
Confidence 445555554443 357999999999999999999999999999999999999997 99999999987531 124679
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
||++|++.+++.+||+|+|.+.++.++.... + ....++++|+.+||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~--------------------~--------------~~~~v~~lLe~lgL 2060 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAE--------------------E--------------IEKVANWSIQSLGL 2060 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHH--------------------H--------------HHHHHHHHHHHcCC
Confidence 9999999999999999999987766543110 0 01235678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
.+.+|+.+++ |||||||||+||+||+++|++|||||||+|||+.++..+.+.|++++++ |+|+|++.| ..+++
T Consensus 2061 ~~~~dk~~~~-----LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH-~mee~ 2133 (2272)
T TIGR01257 2061 SLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSH-SMEEC 2133 (2272)
T ss_pred HHHhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC-CHHHH
Confidence 9988888765 9999999999999999999999999999999999999999999999764 888888765 46689
Q ss_pred HhhcCeEEEEcCCeEEEecChhhHHHHHH
Q 003389 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFE 436 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv~~G~~~~~~~~f~ 436 (824)
..+||||++|.+|+++..|+++++...|.
T Consensus 2134 e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2134 EALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999987765
No 257
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.1e-35 Score=310.77 Aligned_cols=194 Identities=28% Similarity=0.336 Sum_probs=157.8
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
+++++++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... .+...+.+.
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~---------~~~~~~~~~ 98 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSSLL---------GLGGGFNPE 98 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEchhh---------cccccCCCC
Confidence 334567999999999999999999999999999999999999887 99999999875321 112334567
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.+.....+.. .. + ....++++++.+||++..++.++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~--- 141 (224)
T cd03220 99 LTGRENIYLNGRLLGLS----------RK----------E--------------IDEKIDEIIEFSELGDFIDLPVK--- 141 (224)
T ss_pred CcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCChh---
Confidence 89999998764322110 00 0 01124567888999888887776
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|++++|++
T Consensus 142 --~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~ 217 (224)
T cd03220 142 --TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEK 217 (224)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999764 78888877654 477789999999999
Q ss_pred CeEEEec
Q 003389 420 GQIVYQG 426 (824)
Q Consensus 420 G~iv~~G 426 (824)
|++++.|
T Consensus 218 G~i~~~g 224 (224)
T cd03220 218 GKIRFDG 224 (224)
T ss_pred CEEEecC
Confidence 9998765
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9e-36 Score=348.71 Aligned_cols=209 Identities=22% Similarity=0.273 Sum_probs=169.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCCC-------CceEEEEecCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d 254 (824)
+.+|+|||++|++||+++|+|||||||||||++|+|+++|. ...+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--
Q 003389 255 L--HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (824)
Q Consensus 255 ~--~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-- 329 (824)
. +.+.+||+|++.+..... +.. +. +....++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 110 00 01123567889999975
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|+ ...+.
T Consensus 148 ~~~~~~~~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~ 221 (529)
T PRK15134 148 KRLTDYPH-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN-LSIVR 221 (529)
T ss_pred HHHhhCCc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc-HHHHH
Confidence 3466655 5999999999999999999999999999999999999999999999987557888887665 44677
Q ss_pred hhcCeEEEEcCCeEEEecChhhHH
Q 003389 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 409 ~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++||+|++|++|++++.|+++++.
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 899999999999999999988764
No 259
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-35 Score=311.28 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=164.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
..+++|+|+|++|+||++++|+||||||||||+++|+|+++|+ +|+|.++|+ ++++.|+..+.+.+|
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~----------~~~~~~~~~~~~~~t 101 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE----------VSVIAISAGLSGQLT 101 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE----------EeEEecccCCCCCCc
Confidence 4567999999999999999999999999999999999999987 999999985 356677777778899
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.+.....+... ++ ....++.+++.++|.+..++.++
T Consensus 102 v~enl~~~~~~~~~~~-----------------------~~-----------~~~~~~~~l~~~~l~~~~~~~~~----- 142 (264)
T PRK13546 102 GIENIEFKMLCMGFKR-----------------------KE-----------IKAMTPKIIEFSELGEFIYQPVK----- 142 (264)
T ss_pred HHHHHHHHHHHcCCCH-----------------------HH-----------HHHHHHHHHHHcCCchhhcCCcc-----
Confidence 9999987543222100 00 01123557788888877776655
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|++.|+ ..++.++||++++|++|+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~-~~~i~~~~d~i~~l~~G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHN-LGQVRQFCTKIAWIEGGK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC-HHHHHHHcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999865 57888888765 447788999999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
++..|+.+++.+
T Consensus 221 i~~~g~~~~~~~ 232 (264)
T PRK13546 221 LKDYGELDDVLP 232 (264)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
No 260
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-35 Score=307.68 Aligned_cols=189 Identities=24% Similarity=0.281 Sum_probs=159.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+++|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++.....++.++|++|++.+++.+|++
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhhhhceEEeecCcccccCCcHH
Confidence 45999999999999999999999999999999999999987 999999999876433345699999998888889999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+.. ....++.+++.+||++..++.++ .|
T Consensus 101 e~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 138 (214)
T PRK13543 101 ENLHFLCGLHGRR-------------------------------------AKQMPGSALAIVGLAGYEDTLVR-----QL 138 (214)
T ss_pred HHHHHHHHhcCCc-------------------------------------HHHHHHHHHHHcCChhhccCChh-----hC
Confidence 9998764321100 00123557888999877777765 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
||||||||+||++++.+|++|+|||||+|||+.+...+.+.|+++.+ .+.|+|++.|+ ..++.++||++++|+.
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~-~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHG-AYAAPPVRTRMLTLEA 212 (214)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC-hhhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999999876 47888887665 4578899999999864
No 261
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=343.46 Aligned_cols=207 Identities=22% Similarity=0.311 Sum_probs=172.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~ 258 (824)
++++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++|+..+++
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 356999999999999999999999999999999999999887 9999999998754321 356999999988889
Q ss_pred CCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.++.. ..+... ... +....++.+++.+||.+..++.+++
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~--------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 134 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFV--------DQD------------------------KMYRDTKAIFDELDIDIDPRAKVAT 134 (491)
T ss_pred CCCHHHHhhccccccccccc--------CHH------------------------HHHHHHHHHHHHcCCCCCccCchhh
Confidence 9999999987532 111000 000 0011356688999998877777664
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .+.|+|++.|+ .+++.++||++++|
T Consensus 135 -----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~-~~~~~~~~d~i~~l 207 (491)
T PRK10982 135 -----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHK-MEEIFQLCDEITIL 207 (491)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC-HHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999975 47888887654 55788899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|+++..|+++++
T Consensus 208 ~~G~i~~~~~~~~~ 221 (491)
T PRK10982 208 RDGQWIATQPLAGL 221 (491)
T ss_pred ECCEEEeecChhhC
Confidence 99999999987664
No 262
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=354.90 Aligned_cols=206 Identities=22% Similarity=0.272 Sum_probs=169.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC----------CCC-------CCce
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----------EFV-------PQRT 246 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~----------~~~-------~~~~ 246 (824)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|..+. ... ..+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999887 999999986431 100 1246
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 247 CAYISQHD--LHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 247 i~yv~Q~d--~~~~~lTV~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
++||+|++ .+++.+||.||+.++.+.. +.. +. +....++++|+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------RE------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHH
Confidence 99999987 5788899999999875432 111 00 00123567899
Q ss_pred HcCCCc---cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 324 ILGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 324 ~lgL~~---~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
.+||++ ..+..+. .|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..|+|+|+++
T Consensus 152 ~~gL~~~~~~~~~~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 152 QVRIPEAQTILSRYPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HCCCCChhhHHhCCCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999963 3455554 59999999999999999999999999999999999999999999999875588888765
Q ss_pred ccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 401 ~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
|...++.++||+|++|++|++++.|+++++.
T Consensus 227 -Hdl~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 227 -HDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred -CCHHHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 4556788999999999999999999988763
No 263
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.6e-35 Score=345.98 Aligned_cols=219 Identities=22% Similarity=0.289 Sum_probs=175.2
Q ss_pred HhhhcccccCcc----cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeC-Ccc---cCCC
Q 003389 170 ALGLLHLVPSKK----RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC-GHE---LNEF 241 (824)
Q Consensus 170 ~l~~~~~~~~~~----~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~n-G~~---~~~~ 241 (824)
++++.++...+. +.+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++ |.+ +...
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccccc
Confidence 455666655442 2356999999999999999999999999999999999999887 9999996 642 2211
Q ss_pred C------CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchh
Q 003389 242 V------PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (824)
Q Consensus 242 ~------~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (824)
. .++.++|++|++.+++.+||.||+.+...+ ... ..+ ..
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~----------~~~------------------------~~ 400 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELP----------DEL------------------------AR 400 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCC----------HHH------------------------HH
Confidence 1 134699999998888999999999875321 100 000 01
Q ss_pred hhHHHHHHHcCCCc-----cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 316 LVTDYVLKILGLDI-----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 316 ~~~~~iL~~lgL~~-----~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
..++.+++.+||.+ ..++.++ .|||||||||+||+||+.+|++|||||||+|||+.+...+++.|+++++
T Consensus 401 ~~~~~~l~~~~l~~~~~~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~ 475 (520)
T TIGR03269 401 MKAVITLKMVGFDEEKAEEILDKYPD-----ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE 475 (520)
T ss_pred HHHHHHHHhCCCCCccchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 13456889999975 3566655 5999999999999999999999999999999999999999999999987
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
..+.|+|++.|+ ..++.++||++++|++|+++..|+++++.
T Consensus 476 ~~g~tvi~vsHd-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 476 EMEQTFIIVSHD-MDFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HcCcEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 557888887655 45788999999999999999999988764
No 264
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.8e-35 Score=310.66 Aligned_cols=220 Identities=22% Similarity=0.274 Sum_probs=167.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+. +|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEI 90 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHHHHhhcceEEEecCchhc
Confidence 46999999999999999999999999999999999995 465 9999999988754322 24699999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+|+.+++.+..... .. . ......+. .+....++.+++.++|+ +..++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~------------~~-~-----~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (248)
T PRK09580 91 PGVSNQFFLQTALNAV------------RS-Y-----RGQEPLDR---------FDFQDLMEEKIALLKMPEDLLTRSVN 143 (248)
T ss_pred cchhHHHHHHHhhhhh------------hc-c-----cccccchH---------HHHHHHHHHHHHHcCCChhhcccCCC
Confidence 8888777765431100 00 0 00000000 00112356688889995 34454442
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .++|+|+++|++. .+... +|+++
T Consensus 144 ----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~-~~~~~~~d~i~ 217 (248)
T PRK09580 144 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQR-ILDYIKPDYVH 217 (248)
T ss_pred ----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHhhhCCEEE
Confidence 25999999999999999999999999999999999999999999999875 4789999877654 55555 89999
Q ss_pred EEcCCeEEEecChhhHHHHHHHcCC
Q 003389 416 LLSEGQIVYQGPRDNVLEFFEHMGF 440 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~ 440 (824)
+|++|++++.|+.+.+ ..++..++
T Consensus 218 ~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 218 VLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEECCeEEEeCCHHHH-HHHHhcCC
Confidence 9999999999998855 34444443
No 265
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-35 Score=346.10 Aligned_cols=208 Identities=25% Similarity=0.300 Sum_probs=169.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCC-----------------------ccc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCG-----------------------HEL 238 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG-----------------------~~~ 238 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 576 99999972 221
Q ss_pred C-------CC------CCCceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHH
Q 003389 239 N-------EF------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304 (824)
Q Consensus 239 ~-------~~------~~~~~i~yv~Q~-d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~ 304 (824)
. .. ..++.++|++|+ +.+++.+||+||+.|.....+.. ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~~--------------- 144 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GKE--------------- 144 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HHH---------------
Confidence 1 00 013568999997 67888899999998864322210 000
Q ss_pred HHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH
Q 003389 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF 384 (824)
Q Consensus 305 ~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~ 384 (824)
....++++++.+||++..+..++ .|||||||||+||++|+.+|++|||||||+|||+.++..+++.
T Consensus 145 ---------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 145 ---------AVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred ---------HHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 01235678999999887777665 4999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHHH
Q 003389 385 LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEF 434 (824)
Q Consensus 385 L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~ 434 (824)
|+++++..+.|+|++.|+ ...+.++||++++|++|++++.|+.+++.+.
T Consensus 211 l~~l~~~~g~tviivtHd-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 211 LEEAVKASGISMVLTSHW-PEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHHHHhcCcEEEEEeCC-HHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 999976568888887665 4467789999999999999999998877553
No 266
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-35 Score=345.36 Aligned_cols=209 Identities=25% Similarity=0.290 Sum_probs=169.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||+++++|++++|+|||||||||||++|+|+++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 56999999999999999999999999999999999998761 139999999998764321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-cccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~ 338 (824)
+||+||+.+.......+.. .... +....++++++.+||.+.. ++.++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGR------MAYN------------------------AMYLRAKNLLRELQLDADNVTRPVG-- 140 (500)
T ss_pred CcHHHHHHhhccccccccc------cCHH------------------------HHHHHHHHHHHHcCCCCCcccCchh--
Confidence 9999999886432100000 0000 0011356688999998654 45555
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .|.|+|++.|+ ..++.++||+|++|+
T Consensus 141 ---~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd-~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 141 ---DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHK-LNEVKAVCDTICVIR 215 (500)
T ss_pred ---hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHHHhCCEEEEEe
Confidence 4999999999999999999999999999999999999999999999975 47888887654 557888999999999
Q ss_pred CCeEEEecChhh
Q 003389 419 EGQIVYQGPRDN 430 (824)
Q Consensus 419 ~G~iv~~G~~~~ 430 (824)
+|++++.|+.++
T Consensus 216 ~G~i~~~~~~~~ 227 (500)
T TIGR02633 216 DGQHVATKDMST 227 (500)
T ss_pred CCeEeeecCccc
Confidence 999999987754
No 267
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.9e-35 Score=378.54 Aligned_cols=259 Identities=18% Similarity=0.210 Sum_probs=199.8
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCC-CCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI-EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~-~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
.+.....++|+.+..+.++|.... .+ -..... .++..++.|+|+++.+..
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~~--~~-~~~~~~~wp~~g~I~f~nVsf~Y~~-------------------------- 1296 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPWQ--IQ-ETAPPSGWPPRGRVEFRNYCLRYRE-------------------------- 1296 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccc--cc-CCCCCCCCCCCCcEEEEEEEEEeCC--------------------------
Confidence 355677888988888766552100 00 000010 123457999999886521
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
+..++|+|||++|+|||.+||+|++|||||||+++|.|+++|+ +|+|.+||.++.+... ++.++||+|
T Consensus 1297 ------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~~~LR~~i~iVpQ 1367 (1522)
T TIGR00957 1297 ------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367 (1522)
T ss_pred ------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCHHHHHhcCeEECC
Confidence 1135999999999999999999999999999999999999997 9999999999987653 578999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
++.+|.. ||||||+.... .+.+++++++...+.+. .+ -.|++..|
T Consensus 1368 dp~LF~g-TIr~NLdp~~~--------------------------~sdeei~~al~~a~l~~------~I--~~lp~GLd 1412 (1522)
T TIGR00957 1368 DPVLFSG-SLRMNLDPFSQ--------------------------YSDEEVWWALELAHLKT------FV--SALPDKLD 1412 (1522)
T ss_pred CCcccCc-cHHHHcCcccC--------------------------CCHHHHHHHHHHcCcHH------HH--hhCccCCC
Confidence 9988875 99999973210 11233444444333221 11 24567789
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
|.||+ .+..||||||||++|||||+++|+||+||||||+||+.|...|.+.|++..+ ++|+|++.|+. ++...||
T Consensus 1413 t~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~--~~TvI~IAHRl--~ti~~~D 1487 (1522)
T TIGR00957 1413 HECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRL--NTIMDYT 1487 (1522)
T ss_pred ceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCH--HHHHhCC
Confidence 99986 4556999999999999999999999999999999999999999999998753 78998887765 5677899
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
+|++|++|+|+++|+++++++
T Consensus 1488 rIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1488 RVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999864
No 268
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-35 Score=313.65 Aligned_cols=190 Identities=26% Similarity=0.377 Sum_probs=158.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC--CC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE--MT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~--lT 261 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. ..++|++|++.+++. .|
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~ 85 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK--------LRIGYVPQKLYLDTTLPLT 85 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc--------cCEEEeccccccccccChh
Confidence 45999999999999999999999999999999999999987 999999872 359999999877665 37
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+.+++.+.. +. . ...+.++++.+||.+..++.+.
T Consensus 86 ~~~~~~~~~---~~-----------------------~---------------~~~~~~~l~~~gl~~~~~~~~~----- 119 (251)
T PRK09544 86 VNRFLRLRP---GT-----------------------K---------------KEDILPALKRVQAGHLIDAPMQ----- 119 (251)
T ss_pred HHHHHhccc---cc-----------------------c---------------HHHHHHHHHHcCChHHHhCChh-----
Confidence 777664321 00 0 0123457889999887777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.+.||++++|+ |+
T Consensus 120 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~-~~~i~~~~d~i~~l~-~~ 197 (251)
T PRK09544 120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD-LHLVMAKTDEVLCLN-HH 197 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEC-Cc
Confidence 4999999999999999999999999999999999999999999999976547888887665 457888999999996 47
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
+++.|+++++.
T Consensus 198 i~~~g~~~~~~ 208 (251)
T PRK09544 198 ICCSGTPEVVS 208 (251)
T ss_pred eEeeCCHHHHh
Confidence 99999987763
No 269
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-35 Score=311.57 Aligned_cols=207 Identities=20% Similarity=0.286 Sum_probs=162.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CCcceEeeCCcccCC----C---CCCceEEEEecCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNE----F---VPQRTCAYISQHD 254 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~--~~sG~I~~nG~~~~~----~---~~~~~i~yv~Q~d 254 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.++.. . ..++.++|++|++
T Consensus 29 ~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 29 YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence 359999999999999999999999999999999999987521 149999999987631 1 1245699999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC----cc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----IC 330 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~ 330 (824)
.+++. ||+||+.+.....+... ++ . ....++.+++.+++. +.
T Consensus 109 ~~~~~-tv~eni~~~~~~~~~~~----------~~---------~--------------~~~~~~~~l~~~~l~~~l~~~ 154 (265)
T PRK14252 109 NPFPK-SIFENVAYGLRIRGVKR----------RS---------I--------------LEERVENALRNAALWDEVKDR 154 (265)
T ss_pred cCCcc-hHHHHHHhHHHHcCCCh----------HH---------H--------------HHHHHHHHHHHcCCchhhhHH
Confidence 88875 99999987643222110 00 0 001233455566653 22
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.+.. ...|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++++ +.|+|++.|+ .+++.++
T Consensus 155 ~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~-~~~~~~~ 226 (265)
T PRK14252 155 LGDL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHN-MQQAARV 226 (265)
T ss_pred HhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecC-HHHHHHh
Confidence 2333 346999999999999999999999999999999999999999999999965 5788887655 5578889
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
||++++|++|+++..|+.+++.
T Consensus 227 ~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 227 SDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999987763
No 270
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-35 Score=304.47 Aligned_cols=187 Identities=23% Similarity=0.260 Sum_probs=155.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 46999999999999999999999999999999999999987 999999998875321 2457999999988899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.+.....+. .....++.+++.+||.+..++.++
T Consensus 91 v~e~l~~~~~~~~~-------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~----- 128 (204)
T PRK13538 91 ALENLRFYQRLHGP-------------------------------------GDDEALWEALAQVGLAGFEDVPVR----- 128 (204)
T ss_pred HHHHHHHHHHhcCc-------------------------------------cHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 99999876432110 001134668899999877777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. ++-...+|++++
T Consensus 129 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChh-hhccCCceEEec
Confidence 4999999999999999999999999999999999999999999999875 4788888877654 555566677766
No 271
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.7e-35 Score=343.60 Aligned_cols=192 Identities=27% Similarity=0.393 Sum_probs=155.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|+||+.++|+||||||||||+|+|+|+++|+ +|+|.+||.++++... ++.++||+|++.+++ .
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 410 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFA-G 410 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccC-c
Confidence 36999999999999999999999999999999999999997 9999999999876543 468999999988775 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
|++||+.++.. +.+.+++.+++...+. ++.+ -.|++..||.+|+ ..
T Consensus 411 ti~~Ni~~~~~-------------------------~~~~~~i~~a~~~~~l------~~~i--~~lp~Gldt~v~e-~g 456 (529)
T TIGR02857 411 TIAENIRLARP-------------------------DASDAEIRRALERAGL------DEFV--AALPQGLDTLIGE-GG 456 (529)
T ss_pred CHHHHHhccCC-------------------------CCCHHHHHHHHHHcCc------HHHH--HhCcccccchhcc-cc
Confidence 99999987521 1111222222222221 1122 2456678999986 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..||||||||++|||+|+++|++++|||||++||+.++..+.+.|+++. .++|+|++.|++ ++.+.||+|++|
T Consensus 457 ~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 5699999999999999999999999999999999999999999999985 378999988876 456789999986
No 272
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.9e-35 Score=302.29 Aligned_cols=180 Identities=23% Similarity=0.345 Sum_probs=152.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. +|+ +|+|.+||+++..... ++.++|++|+..++
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPEERARLGIFLAFQYPPEI 89 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHHHHhhCcEEEeecChhhc
Confidence 46999999999999999999999999999999999994 565 9999999998865432 23599999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+|+++++.-
T Consensus 90 ~~~~~~~~l~~--------------------------------------------------------------------- 100 (200)
T cd03217 90 PGVKNADFLRY--------------------------------------------------------------------- 100 (200)
T ss_pred cCccHHHHHhh---------------------------------------------------------------------
Confidence 87787765510
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh-hcCeEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-LFDDIIL 416 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~-lfD~iil 416 (824)
..+.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ .++|+|++.|++. .+.+ .||++++
T Consensus 101 -~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~ 177 (200)
T cd03217 101 -VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHV 177 (200)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEE
Confidence 0124999999999999999999999999999999999999999999999875 4789999887765 5666 7999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcC
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMG 439 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G 439 (824)
|++|++++.|+.+ +.++|.+.|
T Consensus 178 l~~G~i~~~~~~~-~~~~~~~~~ 199 (200)
T cd03217 178 LYDGRIVKSGDKE-LALEIEKKG 199 (200)
T ss_pred EECCEEEEEccHH-HHhhhcccc
Confidence 9999999999554 555565444
No 273
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-36 Score=322.50 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=174.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
.++||+++|+.+++|+.++++||+|+||||++++|-.+++++ +|.|+++|+++.... .++.||.||||..++.+
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 467999999999999999999999999999999999999997 999999999987543 35789999998777765
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
|...|+.|+. |+...++...++..+..+. . +..|++.+||.||+.+
T Consensus 352 -ti~yni~ygr-------------------------~~at~eev~aaa~~aqi~~------f--i~~lP~gy~t~Vgerg 397 (497)
T COG5265 352 -TIAYNIKYGR-------------------------PDATAEEVGAAAEAAQIHD------F--IQSLPEGYDTGVGERG 397 (497)
T ss_pred -hHHHHHhccC-------------------------ccccHHHHHHHHHHhhhhH------H--HHhCchhhhcccchhe
Confidence 9999998862 2333333333333322211 1 3367899999999876
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.+ |||||||||+|||+++++|++|++||.||+||+.|+++|...|++.++ |.|.++.-|.- .+.--+|.|+||++
T Consensus 398 lk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrl--sti~~adeiivl~~ 472 (497)
T COG5265 398 LK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRL--STIIDADEIIVLDN 472 (497)
T ss_pred ee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehh--hhccCCceEEEeeC
Confidence 66 999999999999999999999999999999999999999999999985 66766655543 46667999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+|++.|.+++++.
T Consensus 473 g~i~erg~h~~ll~ 486 (497)
T COG5265 473 GRIVERGTHEELLA 486 (497)
T ss_pred CEEEecCcHHHHHH
Confidence 99999999999875
No 274
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.3e-35 Score=300.29 Aligned_cols=179 Identities=25% Similarity=0.321 Sum_probs=146.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCCC-C
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDL-H 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~-~ 256 (824)
++.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++. .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 356999999999999999999999999999999999999887 99999999887421 11356999999863 3
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+..+||+||+.+.....+.. .. + ....++++++.+||++..++.++
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 126 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLS----------EA----------E--------------VERRVREALTAVGASGLRERPTH 126 (190)
T ss_pred cccccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCchhhhhCChh
Confidence 44579999998864322110 00 0 01134668889999887777765
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++.
T Consensus 127 -----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 127 -----CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 4999999999999999999999999999999999999999999999976 4889999888753
No 275
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.5e-35 Score=324.37 Aligned_cols=188 Identities=30% Similarity=0.393 Sum_probs=159.8
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhH
Q 003389 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 280 (824)
Q Consensus 202 LlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~ 280 (824)
|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+..+++.+||+||+.|+.+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999987 9999999998765332 467999999999999999999999975432211
Q ss_pred HHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcC
Q 003389 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360 (824)
Q Consensus 281 ~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~ 360 (824)
+. + ....++++++.+||++..++.+. .|||||||||+|||+|+.+
T Consensus 74 ------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 ------RA----------E--------------IKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFK 118 (325)
T ss_pred ------HH----------H--------------HHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhC
Confidence 00 0 01135678899999887777665 5999999999999999999
Q ss_pred CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 361 p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
|++|||||||+|||+.++..+.+.|+++.+..+.|+|+++|++ .++..+||+|++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999876688998887654 5788999999999999999999998874
No 276
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-35 Score=342.63 Aligned_cols=203 Identities=27% Similarity=0.314 Sum_probs=167.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 46999999999999999999999999999999999999887 999999999875322 13579999999989999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++......+. .... +....++.+++.+||++..++.++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VNRR------------------------LLNYEAREQLEHLGVDIDPDTPLK--- 139 (501)
T ss_pred CCHHHHHHhcccccccCC-------CCHH------------------------HHHHHHHHHHHHcCCCCCcCCchh---
Confidence 999999988532110000 0000 001134668899999877777665
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|++ .++.++||++++|++
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 140 --YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKD 215 (501)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999975 478888877654 477889999999999
Q ss_pred CeEEEecC
Q 003389 420 GQIVYQGP 427 (824)
Q Consensus 420 G~iv~~G~ 427 (824)
|+++..++
T Consensus 216 G~i~~~~~ 223 (501)
T PRK11288 216 GRYVATFD 223 (501)
T ss_pred CEEEeecC
Confidence 99987664
No 277
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.7e-35 Score=301.66 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=156.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 46999999999999999999999999999999999999887 99999999886432 12467999999988888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..... ....++.+++.+||++..++.+.
T Consensus 90 v~e~l~~~~~~~----------------------------------------~~~~~~~~l~~~~l~~~~~~~~~----- 124 (201)
T cd03231 90 VLENLRFWHADH----------------------------------------SDEQVEEALARVGLNGFEDRPVA----- 124 (201)
T ss_pred HHHHHHhhcccc----------------------------------------cHHHHHHHHHHcCChhhhcCchh-----
Confidence 999998742100 01124567889999877777665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ .+.|+|++.|++. +..+.||+++++
T Consensus 125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 4999999999999999999999999999999999999999999999875 4789888877665 566789999887
No 278
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-35 Score=331.89 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=176.9
Q ss_pred EEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccccCcccc--cccccceeeEEeCCeEEEEEcCCCCcHHHHH
Q 003389 137 EVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRS--VRILKDVSGIVKPSRMTLLLGPPGAGKTTLM 214 (824)
Q Consensus 137 ~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~--~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL 214 (824)
.++++|++..+..+.. .++.+.++...+.+. +.+|+||||+|++|++++|+|||||||||||
T Consensus 4 ~i~~~n~tk~y~~~~~----------------~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLL 67 (549)
T PRK13545 4 KVKFEHVTKKYKMYNK----------------PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLS 67 (549)
T ss_pred eEEEEeeeeecccccc----------------ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHH
Confidence 4677787766543321 123444444333322 4699999999999999999999999999999
Q ss_pred HHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCC
Q 003389 215 LALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294 (824)
Q Consensus 215 ~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i 294 (824)
++|+|+++|+ +|+|.++|.+. ++.+...+.+.+||+||+.+.....+.. ..
T Consensus 68 kiLaGLl~P~---sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~~~~----------~~------ 118 (549)
T PRK13545 68 NLIAGVTMPN---KGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMMGLT----------KE------ 118 (549)
T ss_pred HHHhCCCCCC---ceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhcCCC----------HH------
Confidence 9999999887 99999999651 1223345567789999998754322210 00
Q ss_pred CCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCC
Q 003389 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374 (824)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLD 374 (824)
+ ....++.+++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||
T Consensus 119 ----e--------------~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD 175 (549)
T PRK13545 119 ----K--------------IKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGD 175 (549)
T ss_pred ----H--------------HHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence 0 01124567889999888777765 499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 375 SSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 375 s~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+.++..+.+.|+++++ .++|+|++.|++ .++.++||++++|++|++++.|+++++..
T Consensus 176 ~~sr~~LlelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 176 QTFTKKCLDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999865 478888887664 47888999999999999999999988764
No 279
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=288.59 Aligned_cols=223 Identities=26% Similarity=0.349 Sum_probs=182.1
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-------CC--------
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VP-------- 243 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-------~~-------- 243 (824)
++.+...+|++||+..+.|+++.|+|.|||||||+|+||.=+..|. .|+|.+||..+.-. .+
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r 90 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHH
Confidence 3445678999999999999999999999999999999999888887 99999999876311 11
Q ss_pred -CceEEEEecCCCCCCCCCHHHHHHHhhh-hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHH
Q 003389 244 -QRTCAYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (824)
Q Consensus 244 -~~~i~yv~Q~d~~~~~lTV~E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 321 (824)
+...++|+|+.++.++|||.||+.-+.. ..|+ ++. +...+.+..
T Consensus 91 ~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~----------~k~------------------------ea~e~Ae~~ 136 (256)
T COG4598 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGV----------SKA------------------------EAIERAEKY 136 (256)
T ss_pred HHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcC----------CHH------------------------HHHHHHHHH
Confidence 1246999999999999999999965421 1111 111 112235668
Q ss_pred HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 322 L~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
|...||.+..|.++. .|||||+||++|||||+.+|+++++|||||+|||.-.-++++.++++++ .|+|+++++|
T Consensus 137 L~kVGi~ek~~~YP~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTH 210 (256)
T COG4598 137 LAKVGIAEKADAYPA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTH 210 (256)
T ss_pred HHHhCchhhhhcCcc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEee
Confidence 999999998887665 4999999999999999999999999999999999999999999999997 5999999876
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
. ..-..+...+|+.|++|.|-++||++++ |..|...-...|+.
T Consensus 211 E-M~FAR~Vss~v~fLh~G~iEE~G~P~qv--------f~nP~S~RlkqFls 253 (256)
T COG4598 211 E-MGFARDVSSHVIFLHQGKIEEEGPPEQV--------FGNPQSPRLKQFLS 253 (256)
T ss_pred e-hhHHHhhhhheEEeecceecccCChHHH--------hcCCCCHHHHHHHH
Confidence 4 4466778999999999999999999988 44565544455543
No 280
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-35 Score=295.61 Aligned_cols=159 Identities=31% Similarity=0.487 Sum_probs=141.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++... ..++.++|++|++.+++.+|
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 35999999999999999999999999999999999999886 99999999887542 22467999999988888888
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.
T Consensus 90 v~~~~~-------------------------------------------------------------------------- 95 (173)
T cd03230 90 VRENLK-------------------------------------------------------------------------- 95 (173)
T ss_pred HHHHhh--------------------------------------------------------------------------
Confidence 887650
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+.||++++|++|+
T Consensus 96 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGR 172 (173)
T ss_pred -cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999874 78888877654 47778999999999997
Q ss_pred E
Q 003389 422 I 422 (824)
Q Consensus 422 i 422 (824)
+
T Consensus 173 i 173 (173)
T cd03230 173 I 173 (173)
T ss_pred C
Confidence 4
No 281
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.4e-35 Score=298.37 Aligned_cols=161 Identities=26% Similarity=0.398 Sum_probs=143.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~~ 258 (824)
+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++....+ ++.++|++|+. .+++
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVL 91 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccC
Confidence 899999999999999999999999999999999999987 9999999998765431 35799999984 5788
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+||+||+.+..
T Consensus 92 ~~t~~e~l~~~~-------------------------------------------------------------------- 103 (182)
T cd03215 92 DLSVAENIALSS-------------------------------------------------------------------- 103 (182)
T ss_pred CCcHHHHHHHHh--------------------------------------------------------------------
Confidence 899999986530
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.++||++++|+
T Consensus 104 ---~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~ 178 (182)
T cd03215 104 ---LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMY 178 (182)
T ss_pred ---hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEec
Confidence 0999999999999999999999999999999999999999999999975 478888887664 57888999999999
Q ss_pred CCeE
Q 003389 419 EGQI 422 (824)
Q Consensus 419 ~G~i 422 (824)
+|++
T Consensus 179 ~G~i 182 (182)
T cd03215 179 EGRI 182 (182)
T ss_pred CCcC
Confidence 9974
No 282
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=342.94 Aligned_cols=221 Identities=20% Similarity=0.303 Sum_probs=176.2
Q ss_pred HhhhcccccCcc--cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCCcceEeeCCcccCCCCC---
Q 003389 170 ALGLLHLVPSKK--RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVP--- 243 (824)
Q Consensus 170 ~l~~~~~~~~~~--~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~~~~~sG~I~~nG~~~~~~~~--- 243 (824)
++++.++...+. +++.+|+|||++|++|++++|+||||||||||+|+|+|+++ |+ +|+|.++|+++.....
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~---~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW---EGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CcEEEECCEECCCCCHHHH
Confidence 456666665542 23569999999999999999999999999999999999998 46 9999999988753221
Q ss_pred -CceEEEEecCC---CCCCCCCHHHHHHHhhh--hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhh
Q 003389 244 -QRTCAYISQHD---LHHGEMTVRETLDFSGR--CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317 (824)
Q Consensus 244 -~~~i~yv~Q~d---~~~~~lTV~E~L~f~a~--~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (824)
++.++|++|+. .+++.+||.||+.+... ....+. ..+. +....
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~-------~~~~------------------------~~~~~ 384 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR-------IDDA------------------------AELKT 384 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcc-------cChH------------------------HHHHH
Confidence 34689999985 47788999999987531 000000 0000 00123
Q ss_pred HHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 318 TDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 318 ~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
++.+++.+||. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+
T Consensus 385 ~~~~l~~~~l~~~~~~~~~~~-----LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tv 458 (506)
T PRK13549 385 ILESIQRLKVKTASPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAI 458 (506)
T ss_pred HHHHHHhcCccCCCccccccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEE
Confidence 56789999996 567877764 999999999999999999999999999999999999999999999986 48888
Q ss_pred EEEEccCchhHHhhcCeEEEEcCCeEEEecChhhH
Q 003389 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
|+++|+ ..++.++||++++|++|+++..|+.+++
T Consensus 459 i~~sHd-~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSE-LPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCC-HHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 887655 5578899999999999999999987654
No 283
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-35 Score=306.92 Aligned_cols=199 Identities=24% Similarity=0.334 Sum_probs=152.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 46999999999999999999999999999999999999886 999999998875432 2467999999988665 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHH--cCCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKI--LGLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~--lgL~~~~dt~vg~~ 338 (824)
||+||+.+.... . . .+..+.++. .+ ....++. .|+....+ .
T Consensus 93 tv~enl~~~~~~---~-~-------------------~~~~~~~~~---~~------l~~~~~~l~~~l~~~~~-----~ 135 (221)
T cd03244 93 TIRSNLDPFGEY---S-D-------------------EELWQALER---VG------LKEFVESLPGGLDTVVE-----E 135 (221)
T ss_pred hHHHHhCcCCCC---C-H-------------------HHHHHHHHH---hC------cHHHHHhcccccccccc-----c
Confidence 999999653210 0 0 000000000 00 0111221 23332222 2
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++. ++. .||++++|+
T Consensus 136 ~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~ 211 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLD 211 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEE
Confidence 4567999999999999999999999999999999999999999999999864 578888877654 454 599999999
Q ss_pred CCeEEEecC
Q 003389 419 EGQIVYQGP 427 (824)
Q Consensus 419 ~G~iv~~G~ 427 (824)
+|++++.|+
T Consensus 212 ~g~~~~~~~ 220 (221)
T cd03244 212 KGRVVEFDS 220 (221)
T ss_pred CCeEEecCC
Confidence 999998876
No 284
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=342.79 Aligned_cols=221 Identities=19% Similarity=0.333 Sum_probs=173.2
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----Cc
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QR 245 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~ 245 (824)
++.+.++...+ ..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++
T Consensus 265 ~l~~~~l~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 265 VFEVRNVTSRD---RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred EEEEeCccccC---CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHC
Confidence 35555555432 24899999999999999999999999999999999999887 9999999988753221 35
Q ss_pred eEEEEecC---CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 246 TCAYISQH---DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 246 ~i~yv~Q~---d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
.++|++|+ ..+++.+||+||+.+....+..+.. ... +..+.. .....+++++
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~-~~~----------~~~~~~--------------~~~~~~~~~l 393 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYK-GAM----------GLFHEV--------------DEQRTAENQR 393 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhcccccccccccc-ccc----------cccChH--------------HHHHHHHHHH
Confidence 69999998 4578899999999875321100000 000 000000 0011346789
Q ss_pred HHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
+.+||. +..++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|
T Consensus 394 ~~~~l~~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsH 467 (510)
T PRK09700 394 ELLALKCHSVNQNITE-----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSS 467 (510)
T ss_pred HhcCCCCCCccCcccc-----CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcC
Confidence 999996 778887765 999999999999999999999999999999999999999999999986 4888888766
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
+ ..++.++||++++|++|+++..++.
T Consensus 468 d-~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 468 E-LPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred C-HHHHHhhCCEEEEEECCEEEEEecC
Confidence 5 4578899999999999999988865
No 285
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.3e-35 Score=373.72 Aligned_cols=207 Identities=21% Similarity=0.284 Sum_probs=173.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
..+|+||||+|+|||.+||+|++|||||||+++|.|+++|. +|+|.+||.++.+... ++.++||||++.+|..
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g- 1398 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG- 1398 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-
Confidence 35999999999999999999999999999999999999997 9999999999887543 5789999999888765
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||||||+... +.+.+++++++...+.+. . +-.|++..||.||+ ..
T Consensus 1399 TIreNIdp~~--------------------------~~sdeeI~~Al~~a~l~~------~--I~~lp~Gldt~vge-~G 1443 (1560)
T PTZ00243 1399 TVRQNVDPFL--------------------------EASSAEVWAALELVGLRE------R--VASESEGIDSRVLE-GG 1443 (1560)
T ss_pred cHHHHhCccc--------------------------CCCHHHHHHHHHHCCChH------H--HhhCcccccccccC-Cc
Confidence 9999996421 112234455555444322 1 22467788999996 45
Q ss_pred CCCCHHHHHHHHHHHHHHcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 341 RGISGGQKKRVTTGEMLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~-p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
..||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++..+ ++|+|++.|+. ++...||+|++|++
T Consensus 1444 ~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl--~ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRL--HTVAQYDKIIVMDH 1519 (1560)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccH--HHHHhCCEEEEEEC
Confidence 56999999999999999995 899999999999999999999999998753 78998887765 57788999999999
Q ss_pred CeEEEecChhhHHH
Q 003389 420 GQIVYQGPRDNVLE 433 (824)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (824)
|+|++.|+++++++
T Consensus 1520 G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1520 GAVAEMGSPRELVM 1533 (1560)
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999863
No 286
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-36 Score=295.97 Aligned_cols=212 Identities=28% Similarity=0.402 Sum_probs=183.5
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCC
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHH 257 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~ 257 (824)
.+++.||+|+|..|++|.+|+++|||||||||||.+++++++.+ +|+|+++|+++..... .+.++.+-|+...-
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 34678999999999999999999999999999999999999987 9999999999976543 36678888988888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
..+||+|-+.|+.--+..|. +.. ++...++..++.++|++..|...-
T Consensus 88 ~rlTV~dLv~FGRfPYSqGR------------------lt~--------------eD~~~I~~aieyl~L~~l~dryLd- 134 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGR------------------LTK--------------EDRRIINEAIEYLHLEDLSDRYLD- 134 (252)
T ss_pred heeEHHHHhhcCCCcccCCC------------------Cch--------------HHHHHHHHHHHHhcccchHHHhHH-
Confidence 89999999999854332221 111 123457888999999998887765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
+||||||||.-||..++.+.+.++||||.++||...+.++|+.||+++++.++|+|+++|. ...+-.++|.|+-|
T Consensus 135 ----~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHD-INfAS~YsD~IVAl 209 (252)
T COG4604 135 ----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD-INFASCYSDHIVAL 209 (252)
T ss_pred ----hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEec-ccHHHhhhhheeee
Confidence 5999999999999999999999999999999999999999999999999999999998754 55677889999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
.+|+++.+|+++++.+
T Consensus 210 K~G~vv~~G~~~eii~ 225 (252)
T COG4604 210 KNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCCEEEecCCHHHhcC
Confidence 9999999999998863
No 287
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.9e-35 Score=299.24 Aligned_cols=183 Identities=23% Similarity=0.315 Sum_probs=152.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 46999999999999999999999999999999999999887 999999998865432 2367999999988888899
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+.+.....+. + ...++++++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~-----------------------~---------------~~~~~~~l~~~~l~~~~~~~~~~---- 127 (198)
T TIGR01189 90 ALENLHFWAAIHGG-----------------------A---------------QRTIEDALAAVGLTGFEDLPAAQ---- 127 (198)
T ss_pred HHHHHHHHHHHcCC-----------------------c---------------HHHHHHHHHHcCCHHHhcCChhh----
Confidence 99999875321100 0 01245678889998877777764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++++ .+.|+|+++|++... .+++++.
T Consensus 128 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~---~~~~~~~ 197 (198)
T TIGR01189 128 -LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL---VEARELR 197 (198)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc---cceEEee
Confidence 999999999999999999999999999999999999999999999875 488999999887532 3566654
No 288
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-34 Score=369.88 Aligned_cols=270 Identities=18% Similarity=0.283 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCc-EEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPK-IEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~-v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
+......+|+.++++.+++. .+ ..-+...+. .+++++|+++.+.
T Consensus 349 ~~a~~a~~ri~~ii~~~~~~-----~~--~~~~~~~~~~~~I~~~nVsf~Y~---------------------------- 393 (1466)
T PTZ00265 349 MKSLEATNSLYEIINRKPLV-----EN--NDDGKKLKDIKKIQFKNVRFHYD---------------------------- 393 (1466)
T ss_pred HHHHHHHHHHHHHHcCCCCC-----CC--CCCCccCCCCCcEEEEEEEEEcC----------------------------
Confidence 44666777777777766551 11 011111221 2688888887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee-CCcccCCCCC---CceEEEEec
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY-CGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~-nG~~~~~~~~---~~~i~yv~Q 252 (824)
. ....++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|++ +|+++.+... ++.++||+|
T Consensus 394 --~-~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q 467 (1466)
T PTZ00265 394 --T-RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQ 467 (1466)
T ss_pred --C-CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecc
Confidence 0 11246999999999999999999999999999999999999997 999999 5687765432 467999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhc-CCc---hhhHHH----HHh-----HHHHH--------------hcCC-----CCChhH
Q 003389 253 HDLHHGEMTVRETLDFSGRCL-GVG---TRYELL----AEL-----SRREK--------------QAGI-----KPDPEI 300 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~-~~~---~~~~~~----~~~-----~~~e~--------------~~~i-----~~~~~~ 300 (824)
++.+++ .||+|||.++.... +.. ..+... .+. ..+++ ..-+ .++.+.
T Consensus 468 ~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (1466)
T PTZ00265 468 DPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546 (1466)
T ss_pred cccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH
Confidence 988887 59999999874210 000 000000 000 00000 0000 001112
Q ss_pred HHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHH
Q 003389 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380 (824)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~ 380 (824)
+++.+++...+.+. . +.+|++.+||.+|+. +..||||||||++|||||+.+|++|+|||||++||+.++..
T Consensus 547 ~~v~~a~~~~~l~~------~--i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 547 SEVVDVSKKVLIHD------F--VSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred HHHHHHHHHhCcHH------H--HHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 22333332222111 0 125677889999864 66799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 381 I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|.+.|+++.+..++|+|++.|++. +.+.||+|++|++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 999999997545789999887764 45789999999986
No 289
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.7e-35 Score=312.16 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=158.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|++|+||++++|+|+||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~ 109 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-G 109 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-c
Confidence 45999999999999999999999999999999999999886 999999999875432 2467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+...... .. ....++... ...+..++.+ |++...+.
T Consensus 110 tv~~nl~~~~~~----~~----------------------~~~~~~l~~------~~l~~~~~~~~~~l~~~~~~----- 152 (257)
T cd03288 110 SIRFNLDPECKC----TD----------------------DRLWEALEI------AQLKNMVKSLPGGLDAVVTE----- 152 (257)
T ss_pred HHHHhcCcCCCC----CH----------------------HHHHHHHHH------hCcHHHHhhcccccCcEecc-----
Confidence 999998542110 00 000000000 0122344444 44433332
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
..+.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++. ++. .||++++|+
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~-~~dri~~l~ 228 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFA--DRTVVTIAHRVS-TIL-DADLVLVLS 228 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC--CCEEEEEecChH-HHH-hCCEEEEEE
Confidence 3457999999999999999999999999999999999999999999998753 789988887765 444 499999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|++++.|+++++.+
T Consensus 229 ~G~i~~~g~~~~~~~ 243 (257)
T cd03288 229 RGILVECDTPENLLA 243 (257)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999887643
No 290
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.6e-35 Score=302.28 Aligned_cols=186 Identities=25% Similarity=0.363 Sum_probs=154.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++.....++.++|++|++.+++.+||+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 46999999999999999999999999999999999999886 999999998754211346789999998888899999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.....+. ....++++++.+||.+..+..++ .|
T Consensus 92 ~~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (207)
T PRK13539 92 ENLEFWAAFLGG--------------------------------------EELDIAAALEAVGLAPLAHLPFG-----YL 128 (207)
T ss_pred HHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHcCChh-----hc
Confidence 999875322110 00124568889999877776665 49
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||++||++|+.+|++|+|||||+|||+.+..++.+.|+++++ .++|+|++.|++. ++.. |+++.+..
T Consensus 129 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 99999999999999999999999999999999999999999999876 4889998877754 4544 88887754
No 291
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-35 Score=318.01 Aligned_cols=223 Identities=23% Similarity=0.342 Sum_probs=165.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCC-----CCCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++|++++|+|||||||||||++|+|++++. ...+|+|.++|.++... ..++.++|++|+..+
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 35999999999999999999999999999999999998631 02399999999887532 123579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++ .||+||+.+....++.... .....+ ... ...+ .....++.+++.++|.....+..
T Consensus 138 ~~-~tv~enl~~~~~~~~~~~~-~~~~~~------~~~-~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 138 FP-KSIRENISYGPRKHGDINT-GLLARL------LGR-DDKD-------------AEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred cc-ccHHHHHHhHHhhcccccc-cccccc------ccc-CchH-------------HHHHHHHHHHHHcCCchhhhHHh-
Confidence 77 5999999986432210000 000000 000 0000 00123466788888854332222
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE-E
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI-I 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i-i 415 (824)
+..++.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ +.|+|++.|++ ..+.++||++ +
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~~ 271 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTAV 271 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEEE
Confidence 234567999999999999999999999999999999999999999999999975 47888877664 4678899997 5
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|+++++|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988763
No 292
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-35 Score=295.38 Aligned_cols=161 Identities=31% Similarity=0.479 Sum_probs=142.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----~~~~i~yv~Q~d~~~~ 258 (824)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 46999999999999999999999999999999999999886 999999998875432 2467999999988888
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
.+|++||+.+
T Consensus 90 ~~t~~~~l~~---------------------------------------------------------------------- 99 (178)
T cd03229 90 HLTVLENIAL---------------------------------------------------------------------- 99 (178)
T ss_pred CCCHHHheee----------------------------------------------------------------------
Confidence 8899887632
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..++|+|++.|++ .++.+.||++++|+
T Consensus 100 ---~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~ 175 (178)
T cd03229 100 ---GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLR 175 (178)
T ss_pred ---cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEe
Confidence 09999999999999999999999999999999999999999999999874468888877654 46777999999999
Q ss_pred CCe
Q 003389 419 EGQ 421 (824)
Q Consensus 419 ~G~ 421 (824)
+|+
T Consensus 176 ~g~ 178 (178)
T cd03229 176 DGK 178 (178)
T ss_pred CCC
Confidence 985
No 293
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.4e-35 Score=304.45 Aligned_cols=191 Identities=22% Similarity=0.261 Sum_probs=153.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeC--Cc--ccCCCC-------CCceEEEEec
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC--GH--ELNEFV-------PQRTCAYISQ 252 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~n--G~--~~~~~~-------~~~~i~yv~Q 252 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++ |. ++.... .++.++|++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 46999999999999999999999999999999999999986 9999998 43 433221 1246999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-c
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-A 331 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~ 331 (824)
+..+++.+||+|++.+.....+... . + ....+..+++.+||.+. .
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~ 143 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLERGVPR----------E----------A--------------ARARARELLARLNIPERLW 143 (224)
T ss_pred ccccCCCccHHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCchhhh
Confidence 9989999999999987643221100 0 0 01124567889999753 4
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
+..++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|+|++.|+ ...+.++|
T Consensus 144 ~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~-~~~~~~~~ 216 (224)
T TIGR02324 144 HLPPA-----TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHD-EEVRELVA 216 (224)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhc
Confidence 55544 5999999999999999999999999999999999999999999999975 47898888776 44666799
Q ss_pred CeEEEEc
Q 003389 412 DDIILLS 418 (824)
Q Consensus 412 D~iilL~ 418 (824)
|+++.+.
T Consensus 217 d~i~~~~ 223 (224)
T TIGR02324 217 DRVMDVT 223 (224)
T ss_pred ceeEecC
Confidence 9998763
No 294
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.6e-35 Score=304.58 Aligned_cols=197 Identities=25% Similarity=0.354 Sum_probs=160.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCCHHHHHHHh
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFS 269 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lTV~E~L~f~ 269 (824)
++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++.. .++.++|++|++.++ ..+||.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhc
Confidence 468999999999999999999999999999987 9999999987643 246799999997653 347999999875
Q ss_pred hhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHH
Q 003389 270 GRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348 (824)
Q Consensus 270 a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqr 348 (824)
.... +.. . .+.. .....+.++++.+||++..++.++ .||||||
T Consensus 76 ~~~~~~~~------~-----------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 119 (223)
T TIGR03771 76 RTGHIGWL------R-----------RPCV--------------ADFAAVRDALRRVGLTELADRPVG-----ELSGGQR 119 (223)
T ss_pred cccccccc------c-----------CCcH--------------HHHHHHHHHHHHhCCchhhcCChh-----hCCHHHH
Confidence 3211 000 0 0000 001134668899999877777665 4999999
Q ss_pred HHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 349 qRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
|||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|+++|++ .++.++||+++++ +|++++.|+.
T Consensus 120 qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~ 196 (223)
T TIGR03771 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTP 196 (223)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCH
Confidence 999999999999999999999999999999999999999875 488999887765 4788899999999 8999999998
Q ss_pred hhHH
Q 003389 429 DNVL 432 (824)
Q Consensus 429 ~~~~ 432 (824)
+++.
T Consensus 197 ~~~~ 200 (223)
T TIGR03771 197 QQLQ 200 (223)
T ss_pred HHhc
Confidence 7753
No 295
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.9e-34 Score=299.17 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=157.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe-eCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-YCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~-~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
.+|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|. ++|..+ .+.++..+++.+||+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~----------~~~~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL----------PLGANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee----------ccccccccCCcCcHH
Confidence 3799999999999999999999999999999999999887 99997 777532 123456678899999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+.+..++... . + ..+.+.+.++|+...++.+++ |
T Consensus 68 enl~~~~~~~~~~~----------~----------~-----------------~~~~~~~~~~l~~~~~~~~~~-----l 105 (213)
T PRK15177 68 ENARMMASLYGLDG----------D----------E-----------------FSHFCYQLTQLEQCYTDRVSE-----Y 105 (213)
T ss_pred HHHHHHHHHcCCCH----------H----------H-----------------HHHHHHHHhChhHHhhchHhh-----c
Confidence 99998654332110 0 0 012234566787777777764 9
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
|||||||++||++|+.+|++++|||||++||+.++..+.+.|.+..+ +.++|++.|. ..++.++||++++|++|+++
T Consensus 106 S~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~-~~~~~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 106 SVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHN-PRLIKEHCHAFGVLLHGKIT 182 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECC-HHHHHHhcCeeEEEECCeEE
Confidence 99999999999999999999999999999999999999998866543 3567776554 45777899999999999999
Q ss_pred EecChhhHHHHHHH
Q 003389 424 YQGPRDNVLEFFEH 437 (824)
Q Consensus 424 ~~G~~~~~~~~f~~ 437 (824)
+.|+.++..++++.
T Consensus 183 ~~~~~~~~~~~~~~ 196 (213)
T PRK15177 183 MCEDLAQATALFEQ 196 (213)
T ss_pred EeCCHHHHHHHHHH
Confidence 99999998777654
No 296
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.4e-35 Score=339.14 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=163.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCC--C-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLH--H- 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~--~- 257 (824)
+.+|+|+|++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|.++.... .++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 45999999999999999999999999999999999999887 999999997764322 12458999997542 1
Q ss_pred -----CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 258 -----GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 258 -----~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
..+||+|++.+.. +....++.+++.+||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhh
Confidence 1467777764310 00113456889999988888
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|++.|+ ..++.++||
T Consensus 131 ~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~-~~~~~~~~d 203 (490)
T PRK10938 131 RRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNR-FDEIPDFVQ 203 (490)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCC-HHHHHhhCC
Confidence 77764 999999999999999999999999999999999999999999999976 47888887765 457889999
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|+++..|+++++.
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 204 FAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987753
No 297
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3e-35 Score=307.36 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=155.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
..+|+|+|++|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++.+++ .
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R 102 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-h
Confidence 35999999999999999999999999999999999999887 999999998775432 2356999999987765 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.++..... . .+..+.. ....++.+++.+ |+++..+..+
T Consensus 103 tv~~nl~~~~~~~~----~---~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~~~~--- 148 (226)
T cd03248 103 SLQDNIAYGLQSCS----F---ECVKEAA------------------------QKAHAHSFISELASGYDTEVGEKG--- 148 (226)
T ss_pred hHHHHhccccCCCC----H---HHHHHHH------------------------HHcCcHHHHHhccccccchhhcCC---
Confidence 99999987532110 0 0000000 001234567777 7766555554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|+++|++. ++. .||+|++|+
T Consensus 149 --~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~ 222 (226)
T cd03248 149 --SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS-TVE-RADQILVLD 222 (226)
T ss_pred --CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHH-HHH-hCCEEEEec
Confidence 45999999999999999999999999999999999999999999999864 578888887765 554 599999999
Q ss_pred CCeE
Q 003389 419 EGQI 422 (824)
Q Consensus 419 ~G~i 422 (824)
+|++
T Consensus 223 ~g~i 226 (226)
T cd03248 223 GGRI 226 (226)
T ss_pred CCcC
Confidence 9974
No 298
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-35 Score=277.87 Aligned_cols=205 Identities=26% Similarity=0.328 Sum_probs=170.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---------CCCceEEEEec
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---------VPQRTCAYISQ 252 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~---------~~~~~i~yv~Q 252 (824)
+..++|.||++..+.|+.+.++||||+|||||++.|.=+.-|. +|+..+.|...+-. ..++.+|+|+|
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfq 89 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQ 89 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHHhhhhhhh
Confidence 4567999999999999999999999999999999998777776 99999988654311 11367999999
Q ss_pred CCCCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 253 HDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+..+.|.|||.|||.-+. +..|+ ...+......++|+.|.|.+.+
T Consensus 90 qy~lwphltv~enlieap~kv~gl----------------------------------~~~qa~~~a~ellkrlrl~~~a 135 (242)
T COG4161 90 QYNLWPHLTVQENLIEAPCRVLGL----------------------------------SKDQALARAEKLLKRLRLKPYA 135 (242)
T ss_pred hhccCchhHHHHHHHhhhHHHhCC----------------------------------CHHHHHHHHHHHHHHhcccccc
Confidence 999999999999996542 11111 1111223456789999999999
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
|..+- .|||||+|||+|||||+.+|.+|++||||++|||+-+.++++.+++++. .|.|-+++.|. ..-....+
T Consensus 136 dr~pl-----hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthe-v~va~k~a 208 (242)
T COG4161 136 DRYPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHE-VEVARKTA 208 (242)
T ss_pred ccCce-----ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEee-hhHHHhhh
Confidence 97765 4999999999999999999999999999999999999999999999986 69998888765 33566789
Q ss_pred CeEEEEcCCeEEEecChhh
Q 003389 412 DDIILLSEGQIVYQGPRDN 430 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~ 430 (824)
.+|+.|.+|+||++|+.+.
T Consensus 209 s~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 209 SRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hheEeeecCeeEeecchhh
Confidence 9999999999999999764
No 299
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-33 Score=304.58 Aligned_cols=195 Identities=23% Similarity=0.324 Sum_probs=150.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|. +|+|.++| .++|++|++.+++. ||+|
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g----------~i~yv~q~~~l~~~-tv~e 116 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG----------RISFSSQFSWIMPG-TIKE 116 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC----------EEEEEeCccccccc-CHHH
Confidence 5899999999999999999999999999999999999987 99999988 38999999877764 9999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+..... . . . .....++. ..+..++.+ ....++.++. ..+.||
T Consensus 117 nl~~~~~~~---~-~----~---------------~~~~l~~~---------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (282)
T cd03291 117 NIIFGVSYD---E-Y----R---------------YKSVVKAC---------QLEEDITKF--PEKDNTVLGE-GGITLS 161 (282)
T ss_pred HhhcccccC---H-H----H---------------HHHHHHHh---------CCHHHHHhc--cccccceecC-CCCcCC
Confidence 998753210 0 0 0 00000000 011122222 2223444432 345799
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L-~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.+ +++. .+.|+|++.|++. ++ ..||++++|++|+++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~ 237 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChH-HH-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999865 5554 3678888877654 44 579999999999999
Q ss_pred EecChhhHH
Q 003389 424 YQGPRDNVL 432 (824)
Q Consensus 424 ~~G~~~~~~ 432 (824)
+.|+++++.
T Consensus 238 ~~g~~~~~~ 246 (282)
T cd03291 238 FYGTFSELQ 246 (282)
T ss_pred EECCHHHHH
Confidence 999988764
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.7e-35 Score=338.70 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=173.5
Q ss_pred HhhhcccccCcc--cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCCcceEeeCCcccCCCC----
Q 003389 170 ALGLLHLVPSKK--RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELNEFV---- 242 (824)
Q Consensus 170 ~l~~~~~~~~~~--~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~-~~~~sG~I~~nG~~~~~~~---- 242 (824)
++++.++...+. +++.+|+|+|++|++||+++|+|||||||||||++|+|+++| . +|+|.++|+++....
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCHHHH
Confidence 355566654432 235699999999999999999999999999999999999985 5 899999998875321
Q ss_pred CCceEEEEecCC---CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHH
Q 003389 243 PQRTCAYISQHD---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTD 319 (824)
Q Consensus 243 ~~~~i~yv~Q~d---~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (824)
.++.++|++|+. .+++.+||+||+.++.. ....... ..... +....++
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~-~~~~~~~----~~~~~------------------------~~~~~~~ 384 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVL-KSFCFKM----RIDAA------------------------AELQIIG 384 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhh-hhhccCC----cCCHH------------------------HHHHHHH
Confidence 135699999985 57889999999987531 0000000 00000 0112356
Q ss_pred HHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 003389 320 YVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398 (824)
Q Consensus 320 ~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIi 398 (824)
.+++.+||.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|+
T Consensus 385 ~~l~~~~l~~~~~~~~~~~-----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii 458 (500)
T TIGR02633 385 SAIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIV 458 (500)
T ss_pred HHHHhcCccCCCccCcccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEE
Confidence 7889999964 56777764 999999999999999999999999999999999999999999999986 4888888
Q ss_pred EEccCchhHHhhcCeEEEEcCCeEEEecChh
Q 003389 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRD 429 (824)
Q Consensus 399 si~q~~~e~~~lfD~iilL~~G~iv~~G~~~ 429 (824)
++|+ ..++.++||++++|++|+++..++.+
T Consensus 459 vsHd-~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 459 VSSE-LAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred ECCC-HHHHHHhCCEEEEEECCEEEEEEccc
Confidence 7655 55788999999999999999877654
No 301
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-34 Score=298.07 Aligned_cols=184 Identities=25% Similarity=0.311 Sum_probs=149.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+.|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G 96 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c
Confidence 35999999999999999999999999999999999999887 999999999875432 2467999999987776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+... .. .+ .+.+.++ + + ...
T Consensus 97 tv~~~l~~~~~---~~-----------------------~~---------------~~~~~l~---~----~-----~~~ 123 (207)
T cd03369 97 TIRSNLDPFDE---YS-----------------------DE---------------EIYGALR---V----S-----EGG 123 (207)
T ss_pred cHHHHhcccCC---CC-----------------------HH---------------HHHHHhh---c----c-----CCC
Confidence 99999965210 00 00 0111222 1 2 234
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+.|+|++.|++. ++.. ||++++|++|
T Consensus 124 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~~-~~~~-~d~v~~l~~g 199 (207)
T cd03369 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRLR-TIID-YDKILVMDAG 199 (207)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHhh-CCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999984 3788888877655 4544 9999999999
Q ss_pred eEEEecCh
Q 003389 421 QIVYQGPR 428 (824)
Q Consensus 421 ~iv~~G~~ 428 (824)
+++.+|++
T Consensus 200 ~i~~~g~~ 207 (207)
T cd03369 200 EVKEYDHP 207 (207)
T ss_pred EEEecCCC
Confidence 99988763
No 302
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=335.39 Aligned_cols=209 Identities=24% Similarity=0.354 Sum_probs=169.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHH 257 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~ 257 (824)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 4799999999999999999999999999999999999887 9999999988754322 34699999995 577
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||.||+.+........ ... ..... +....++++++.+||. +..++.++
T Consensus 343 ~~~tv~e~l~~~~~~~~~~-~~~---~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 394 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSR-AGG---SLKHA------------------------DEQQAVSDFIRLFNIKTPSMEQAIG 394 (501)
T ss_pred CCCcHHHHhhhhhhhhhcc-ccc---ccCHH------------------------HHHHHHHHHHHhcCCCCCCccCchh
Confidence 8899999998753100000 000 00000 0012356789999995 66777776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|+|+++|+ ..++.++||++++
T Consensus 395 ~-----LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd-~~~~~~~~d~v~~ 467 (501)
T PRK10762 395 L-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSE-MPEVLGMSDRILV 467 (501)
T ss_pred h-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCC-HHHHHhhCCEEEE
Confidence 4 999999999999999999999999999999999999999999999976 48888887655 5588899999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|+++..|+.+++
T Consensus 468 l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 468 MHEGRISGEFTREQA 482 (501)
T ss_pred EECCEEEEEeccccC
Confidence 999999999987765
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=336.62 Aligned_cols=209 Identities=20% Similarity=0.332 Sum_probs=169.5
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHH 257 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~ 257 (824)
.+++|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|++ .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 4899999999999999999999999999999999999887 9999999987753211 35689999985 488
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||.||+.++......... .. .... .....++.+++.+||. +..++.++
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~--~~--~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 395 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAG--CL--INNR------------------------WEAENADRFIRSLNIKTPSREQLIM 395 (501)
T ss_pred CCCCHHHHhccccchhhcccc--cc--cChH------------------------HHHHHHHHHHHhcCcccCCccCccc
Confidence 899999999875321100000 00 0000 0011346689999994 67888887
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|.|+|+++|+ ..++.++||++++
T Consensus 396 ~-----LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd-~~~~~~~~d~i~~ 468 (501)
T PRK11288 396 N-----LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSD-LPEVLGVADRIVV 468 (501)
T ss_pred c-----CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHhhCCEEEE
Confidence 5 999999999999999999999999999999999999999999999986 48888887654 5678899999999
Q ss_pred EcCCeEEEecChhhH
Q 003389 417 LSEGQIVYQGPRDNV 431 (824)
Q Consensus 417 L~~G~iv~~G~~~~~ 431 (824)
|++|++++.|+++++
T Consensus 469 l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 469 MREGRIAGELAREQA 483 (501)
T ss_pred EECCEEEEEEccccC
Confidence 999999999987653
No 304
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.6e-34 Score=290.06 Aligned_cols=156 Identities=26% Similarity=0.455 Sum_probs=137.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
+.+++|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 90 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG- 90 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-
Confidence 45999999999999999999999999999999999999987 999999998876432 24679999998766653
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+
T Consensus 91 tv~~~l-------------------------------------------------------------------------- 96 (173)
T cd03246 91 SIAENI-------------------------------------------------------------------------- 96 (173)
T ss_pred cHHHHC--------------------------------------------------------------------------
Confidence 766532
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++ +.||++++|++|
T Consensus 97 --LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G 171 (173)
T cd03246 97 --LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDG 171 (173)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999975 4889999887764 44 689999999999
Q ss_pred eE
Q 003389 421 QI 422 (824)
Q Consensus 421 ~i 422 (824)
++
T Consensus 172 ~i 173 (173)
T cd03246 172 RV 173 (173)
T ss_pred CC
Confidence 74
No 305
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-34 Score=324.73 Aligned_cols=216 Identities=30% Similarity=0.376 Sum_probs=180.3
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ce
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RT 246 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~ 246 (824)
++..++.+++ +..++|+||||++++||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++.....++ .-
T Consensus 9 l~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 9 LELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCC
Confidence 3444554443 4568999999999999999999999999999999999999998 99999999988654443 45
Q ss_pred EEEEecCCCCCCCCCHHHHHHHhhhhcCC-chhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc
Q 003389 247 CAYISQHDLHHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL 325 (824)
Q Consensus 247 i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~-~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l 325 (824)
|+.|+|+..+.|+|||.||+.++...... + + + +.. .....+..+|+.+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g----~---i-------------d~~-----------~m~~~A~~~l~~l 133 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFG----L---I-------------DRK-----------AMRRRARELLARL 133 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCC----c---c-------------CHH-----------HHHHHHHHHHHHc
Confidence 89999999999999999999876443221 1 0 0 000 0122456789999
Q ss_pred CCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 326 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 326 gL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
|+....+++|++ ||+||||.|.||+||..++++|+|||||+.|+...+..+.+.++++.+ .|.++|+++ |-.+
T Consensus 134 g~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~IS-Hrl~ 206 (500)
T COG1129 134 GLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYIS-HRLD 206 (500)
T ss_pred CCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEc-CcHH
Confidence 996558888886 999999999999999999999999999999999999999999999986 588888865 5788
Q ss_pred hHHhhcCeEEEEcCCeEEEecCh
Q 003389 406 ETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 406 e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
|++++||||.||.||+.+..++.
T Consensus 207 Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 207 EVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999988873
No 306
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.8e-34 Score=296.78 Aligned_cols=194 Identities=22% Similarity=0.342 Sum_probs=147.8
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEe
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYIS 251 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~ 251 (824)
.+.+.+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++|++
T Consensus 9 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 9 SWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred ecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEc
Confidence 3333457999999999999999999999999999999999999886 999999998765321 135699999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc--
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-- 329 (824)
|++.++ ..||+||+.+..... . + + ...+++.++|.+
T Consensus 86 q~~~~~-~~t~~~nl~~~~~~~-------------~-~---------~------------------~~~~~~~~~l~~~~ 123 (218)
T cd03290 86 QKPWLL-NATVEENITFGSPFN-------------K-Q---------R------------------YKAVTDACSLQPDI 123 (218)
T ss_pred CCCccc-cccHHHHHhhcCcCC-------------H-H---------H------------------HHHHHHHhCcHHHH
Confidence 998776 579999998753110 0 0 0 011122222221
Q ss_pred -----cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCcEEEEEEcc
Q 003389 330 -----CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK--FLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 330 -----~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~--~L~~l~~~~~~tvIisi~q 402 (824)
..++..+ ..+..|||||||||+||++|+.+|++|||||||+|||+.+...+++ .++.+.+ .+.|+|++.|+
T Consensus 124 ~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~ 201 (218)
T cd03290 124 DLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHK 201 (218)
T ss_pred HhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 1122222 2345699999999999999999999999999999999999999998 5666543 57899998887
Q ss_pred CchhHHhhcCeEEEEcCCe
Q 003389 403 PAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 403 ~~~e~~~lfD~iilL~~G~ 421 (824)
+. .+ ..||++++|++|.
T Consensus 202 ~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 202 LQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred hH-HH-hhCCEEEEecCCC
Confidence 65 44 5699999999884
No 307
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-33 Score=299.56 Aligned_cols=183 Identities=27% Similarity=0.282 Sum_probs=150.8
Q ss_pred ccccceeeEEe-----CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 185 RILKDVSGIVK-----PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 185 ~IL~~vs~~I~-----~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
..++|+++.++ +|++++|+|||||||||||++|+|.++|+ +|+|.++|. .++|++|+....+.
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~---------~i~~~~q~~~~~~~ 75 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD---------TVSYKPQYIKADYE 75 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc---------eEEEecccccCCCC
Confidence 35667777765 79999999999999999999999999987 999999984 58999998877788
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+|++.+.....+. . ....+++++.+||++..++.++
T Consensus 76 ~tv~e~l~~~~~~~~~---------------------~-----------------~~~~~~~l~~l~l~~~~~~~~~--- 114 (246)
T cd03237 76 GTVRDLLSSITKDFYT---------------------H-----------------PYFKTEIAKPLQIEQILDREVP--- 114 (246)
T ss_pred CCHHHHHHHHhhhccc---------------------c-----------------HHHHHHHHHHcCCHHHhhCChh---
Confidence 9999999764211000 0 0013457888999887777765
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.|||||||||+||++|+.+|++++|||||++||+.++..+.+.|+++++..++|+|++.|+ ..++..+||++++|++
T Consensus 115 --~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd-~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 115 --ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD-IIMIDYLADRLIVFEG 191 (246)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEcC
Confidence 4999999999999999999999999999999999999999999999987567888887765 4577789999999976
Q ss_pred CeEE
Q 003389 420 GQIV 423 (824)
Q Consensus 420 G~iv 423 (824)
+..+
T Consensus 192 ~~~~ 195 (246)
T cd03237 192 EPSV 195 (246)
T ss_pred CCee
Confidence 5443
No 308
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1e-33 Score=332.60 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=154.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 411 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-Q 411 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHHHHhhheEEEecChhHHH-H
Confidence 35899999999999999999999999999999999999997 9999999999876542 468999999876665 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc--
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE-- 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~-- 338 (824)
|++|| . .. .+ ...+++.++.+++....+. ++.
T Consensus 412 ti~~n---~-----~~---------------------~~---------------~~~~~~~~~~~~l~~~~~~--~~~~~ 445 (547)
T PRK10522 412 LLGPE---G-----KP---------------------AN---------------PALVEKWLERLKMAHKLEL--EDGRI 445 (547)
T ss_pred hhccc---c-----Cc---------------------hH---------------HHHHHHHHHHcCCchhhhc--cccCC
Confidence 77776 1 00 00 0012345667777654332 221
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
....||||||||++|||+++.+|++|+|||||++||+.++..+.+.|.+..+..++|+|++.|++ ++...||+|++|+
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~ 523 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMR 523 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEE
Confidence 13579999999999999999999999999999999999999999999876543478999988876 5678899999999
Q ss_pred CCeEEEe
Q 003389 419 EGQIVYQ 425 (824)
Q Consensus 419 ~G~iv~~ 425 (824)
+|++++.
T Consensus 524 ~G~i~e~ 530 (547)
T PRK10522 524 NGQLSEL 530 (547)
T ss_pred CCEEEEe
Confidence 9999866
No 309
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.7e-34 Score=294.90 Aligned_cols=182 Identities=20% Similarity=0.256 Sum_probs=151.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..++.++|++|+..+++.+|
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 90 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLT 90 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHHHhheEEeccccccCcCCC
Confidence 46999999999999999999999999999999999999987 99999999887531 12467999999888888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.+..... .+ ...++++++.+++.+..++.++
T Consensus 91 v~~~~~~~~~~~----------------------~~-----------------~~~~~~~l~~~~l~~~~~~~~~----- 126 (200)
T PRK13540 91 LRENCLYDIHFS----------------------PG-----------------AVGITELCRLFSLEHLIDYPCG----- 126 (200)
T ss_pred HHHHHHHHHhcC----------------------cc-----------------hHHHHHHHHHcCCchhhhCChh-----
Confidence 999998753110 00 0124567888999877776665
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
.||||||||++||++++.+|++|+|||||+|||+.+...+.+.|+++++ .+.|+|++.|++. ..+.+|...
T Consensus 127 ~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCch--hccccchhh
Confidence 4999999999999999999999999999999999999999999999865 4889999887753 445566543
No 310
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.1e-34 Score=290.42 Aligned_cols=161 Identities=29% Similarity=0.479 Sum_probs=140.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--CCCceEEEEecCCCCCCCCCH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++|+|+|++|++||+++|+|||||||||||++|+|..+|. +|+|.++|.++... ..++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 5999999999999999999999999999999999999886 99999999876432 12467999999877665 588
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+ ...
T Consensus 92 ~~~i-------------------------------------------------------------------------~~~ 98 (178)
T cd03247 92 RNNL-------------------------------------------------------------------------GRR 98 (178)
T ss_pred HHhh-------------------------------------------------------------------------ccc
Confidence 7765 013
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. .+.|+|++.|++. ++ ..||++++|++|++
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i 174 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHLT-GI-EHMDKILFLENGKI 174 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999985 3788888877765 45 46999999999999
Q ss_pred EEec
Q 003389 423 VYQG 426 (824)
Q Consensus 423 v~~G 426 (824)
++.|
T Consensus 175 ~~~~ 178 (178)
T cd03247 175 IMQG 178 (178)
T ss_pred EecC
Confidence 8765
No 311
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.7e-34 Score=293.86 Aligned_cols=185 Identities=27% Similarity=0.381 Sum_probs=141.1
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++|++|++.++ .+||+|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g----------~i~~~~q~~~l~-~~t~~e 84 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG----------SIAYVSQEPWIQ-NGTIRE 84 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC----------EEEEEecCchhc-cCcHHH
Confidence 6999999999999999999999999999999999999987 99999998 599999998776 569999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+..... . +...++....+ ....++.+ +...++.+. ...+.||
T Consensus 85 nl~~~~~~~---~-----------------------~~~~~~~~~~~------l~~~~~~~--~~~~~~~~~-~~~~~lS 129 (204)
T cd03250 85 NILFGKPFD---E-----------------------ERYEKVIKACA------LEPDLEIL--PDGDLTEIG-EKGINLS 129 (204)
T ss_pred HhccCCCcC---H-----------------------HHHHHHHHHcC------cHHHHHhc--cCcccceec-CCCCcCC
Confidence 998753210 0 00000000000 01112222 112233332 2356799
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
||||||++||++|+.+|++++|||||+|||+.+...+.+ .++++.+ .+.|+|++.|++. .+.. +|++++|++|+
T Consensus 130 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998 4666655 3789999888764 4555 99999999985
No 312
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.4e-34 Score=290.51 Aligned_cols=166 Identities=33% Similarity=0.532 Sum_probs=138.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+|+|+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++..... ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~i~~~~q-------- 80 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ-------- 80 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCcCCHHHHHHHHhHHHH--------
Confidence 46999999999999999999999999999999999999887 9999999987754321 123555555
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
+++.+||.+..++.+
T Consensus 81 ------------------------------------------------------------~l~~~gl~~~~~~~~----- 95 (180)
T cd03214 81 ------------------------------------------------------------ALELLGLAHLADRPF----- 95 (180)
T ss_pred ------------------------------------------------------------HHHHcCCHhHhcCCc-----
Confidence 234455554444444
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.+.|+|++.|++. ++.++||++++|++|
T Consensus 96 ~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g 174 (180)
T cd03214 96 NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDG 174 (180)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 3599999999999999999999999999999999999999999999997644778888776654 677899999999999
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++.|
T Consensus 175 ~i~~~~ 180 (180)
T cd03214 175 RIVAQG 180 (180)
T ss_pred EEEecC
Confidence 998754
No 313
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-33 Score=361.74 Aligned_cols=206 Identities=25% Similarity=0.263 Sum_probs=169.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|||++|+|||.+||+|++|||||||+++|.|+++ . +|+|.+||.++..... ++.++||||++.+|+.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G- 1306 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG- 1306 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-
Confidence 469999999999999999999999999999999999986 4 8999999999987543 5789999999988875
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||||||+.... .+.+++++++...+... . +-.+++..||.||+ .+
T Consensus 1307 TIR~NLdp~~~--------------------------~tdeei~~aL~~~~L~~------~--i~~lp~GLdt~v~e-~G 1351 (1490)
T TIGR01271 1307 TFRKNLDPYEQ--------------------------WSDEEIWKVAEEVGLKS------V--IEQFPDKLDFVLVD-GG 1351 (1490)
T ss_pred CHHHHhCcccC--------------------------CCHHHHHHHHHHCCCHH------H--HHhCcccccccccc-CC
Confidence 99999964210 11223334433332211 1 12456678999986 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..||||||||++|||||+++|+||+|||||++||..+...|.+.|++..+ ++|+|++.|.+ ++...||+|++|++|
T Consensus 1352 ~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl--~ti~~~DrIlvL~~G 1427 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS--NCTVILSEHRV--EALLECQQFLVIEGS 1427 (1490)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCH--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 78999887765 567779999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+|++.|+++++++
T Consensus 1428 ~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1428 SVKQYDSIQKLLN 1440 (1490)
T ss_pred EEEEeCCHHHHHc
Confidence 9999999998863
No 314
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.9e-34 Score=331.34 Aligned_cols=205 Identities=20% Similarity=0.289 Sum_probs=166.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCC---CCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHD---LHHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d---~~~~ 258 (824)
+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++|++|+. .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999999887 9999999998754322 24699999974 4788
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (824)
.+||.||+....... .... . .+ . .....++++|+.+||+ ...++.+++
T Consensus 355 ~~t~~~~l~~~~~~~-~~~~------~---------~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 403 (510)
T PRK15439 355 DAPLAWNVCALTHNR-RGFW------I---------KP-A--------------RENAVLERYRRALNIKFNHAEQAART 403 (510)
T ss_pred CCcHHHHHHhhhhhh-hccc------c---------Ch-H--------------HHHHHHHHHHHHcCCCCCCccCcccc
Confidence 899999996421100 0000 0 00 0 0011356789999997 677877764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++++ .+.|+|++.|+ ..++.++||++++|
T Consensus 404 -----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd-~~~i~~~~d~i~~l 476 (510)
T PRK15439 404 -----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSD-LEEIEQMADRVLVM 476 (510)
T ss_pred -----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999987 47888887654 56888999999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
++|+++..|.++++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (510)
T PRK15439 477 HQGEISGALTGAAI 490 (510)
T ss_pred ECCEEEEEEccccC
Confidence 99999998877654
No 315
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.2e-34 Score=276.16 Aligned_cols=195 Identities=24% Similarity=0.392 Sum_probs=165.6
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~ 258 (824)
.+.+||+++|+.+.+||..+|.||||||||||||+++.+..|+ +|++++.|++++...+ +.+++|+.|.+.+|+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 3567999999999999999999999999999999999999997 9999999999987655 467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-cccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~ 337 (824)
+ ||++|+.|..+.+.- +||++ .....|+.++|++.. +..+
T Consensus 91 ~-tVeDNlifP~~~r~r-------------------r~dr~-----------------aa~~llar~~l~~~~L~k~i-- 131 (223)
T COG4619 91 D-TVEDNLIFPWQIRNR-------------------RPDRA-----------------AALDLLARFALPDSILTKNI-- 131 (223)
T ss_pred c-chhhccccchHHhcc-------------------CCChH-----------------HHHHHHHHcCCchhhhcchh--
Confidence 8 999999997654421 22221 123477888887543 3333
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
..||||||||++|+|-|..-|+||+||||||+||..++..|-+.|-++.+..++.++-++|.+ .+..+.||+++-+
T Consensus 132 ---t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl 207 (223)
T COG4619 132 ---TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITL 207 (223)
T ss_pred ---hhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEe
Confidence 459999999999999999999999999999999999999999999999876677777766655 4778999999999
Q ss_pred cCCeE
Q 003389 418 SEGQI 422 (824)
Q Consensus 418 ~~G~i 422 (824)
..|++
T Consensus 208 ~~G~~ 212 (223)
T COG4619 208 QPGHA 212 (223)
T ss_pred ccCcc
Confidence 99986
No 316
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-33 Score=281.60 Aligned_cols=153 Identities=32% Similarity=0.516 Sum_probs=132.4
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT 261 (824)
.+|+|+|++|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.... .++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 6999999999999999999999999999999999999986 999999998875432 1356999999875543 35
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.||+
T Consensus 92 ~~e~l--------------------------------------------------------------------------- 96 (171)
T cd03228 92 IRENI--------------------------------------------------------------------------- 96 (171)
T ss_pred HHHHh---------------------------------------------------------------------------
Confidence 54321
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.+ ++|+|++.|++. ++.. ||++++|++|+
T Consensus 97 -LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 -LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred -hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999853 688888877654 5555 99999999985
No 317
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-33 Score=297.95 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=178.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCC--
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD-- 254 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d-- 254 (824)
...++++||+++++||.++|+|.||||||||-.+|.+++++ +|+|.|+|++++.... ++.+-.|+||+
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg 374 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG 374 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence 45689999999999999999999999999999999999876 7999999999875432 46789999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+-|.|||.+-+.-+.+.+.+. +++.| ...++.++|+..||+...
T Consensus 375 SLsPRmtV~qII~EGL~vh~~~--------ls~~e------------------------R~~rv~~aL~EVGLDp~~--- 419 (534)
T COG4172 375 SLSPRMTVGQIIEEGLRVHEPK--------LSAAE------------------------RDQRVIEALEEVGLDPAT--- 419 (534)
T ss_pred CCCcccCHHHHhhhhhhhcCCC--------CCHHH------------------------HHHHHHHHHHHcCCChhH---
Confidence 5789999999999887766532 11221 123466789999997432
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
-++++.+.|||||||++||||++.+|++++||||||+||-+-+.+|+++|+++.++.+.+-+++. |+..-+-.+||+|
T Consensus 420 -r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFIS-HDL~VvrAl~~~v 497 (534)
T COG4172 420 -RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFIS-HDLAVVRALCHRV 497 (534)
T ss_pred -hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEe-ccHHHHHHhhceE
Confidence 13456679999999999999999999999999999999999999999999999998888888864 5666788899999
Q ss_pred EEEcCCeEEEecChhhHH
Q 003389 415 ILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (824)
+||.+|+||++|+.+++.
T Consensus 498 iVm~~GkiVE~G~~~~if 515 (534)
T COG4172 498 IVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EEEeCCEEeeeCCHHHHh
Confidence 999999999999999884
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-33 Score=286.08 Aligned_cols=178 Identities=21% Similarity=0.291 Sum_probs=145.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.++ ++|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... ++.++|++|+..+++.+||+|
T Consensus 15 ~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 15 NLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred EEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHH
Confidence 355 499999999999999999999999999999999987 999999999875432 356899999988888899999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.+.....+ ....++.+++.+|+++..++.++ .||
T Consensus 90 ~l~~~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 125 (195)
T PRK13541 90 NLKFWSEIYN---------------------------------------SAETLYAAIHYFKLHDLLDEKCY-----SLS 125 (195)
T ss_pred HHHHHHHhcc---------------------------------------cHHHHHHHHHHcCCHhhhccChh-----hCC
Confidence 9987532110 00123557788899877776655 499
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
||||||++||++++.+|++|+|||||+|||+.++..+.+.|++..+ .+.|+|++.|++. + ...+|.|
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~-i~~~~~~ 192 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLES-S-IKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCcc-c-cchhhee
Confidence 9999999999999999999999999999999999999999987654 5789999887764 2 3335554
No 319
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=4.6e-33 Score=277.76 Aligned_cols=150 Identities=27% Similarity=0.450 Sum_probs=132.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.++|++|++.++ .+||+
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~ 81 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG--------EDLLFLPQRPYLP-LGTLR 81 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC--------ceEEEECCCCccc-cccHH
Confidence 46999999999999999999999999999999999999887 999999873 5799999987654 67999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.+. ..+.|
T Consensus 82 ~nl~~~---------------------------------------------------------------------~~~~L 92 (166)
T cd03223 82 EQLIYP---------------------------------------------------------------------WDDVL 92 (166)
T ss_pred HHhhcc---------------------------------------------------------------------CCCCC
Confidence 998541 01359
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++ +.|+|++.|++. ....||++++|++|
T Consensus 93 S~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 999999999999999999999999999999999999999999875 478999888864 45799999999875
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.2e-33 Score=325.89 Aligned_cols=220 Identities=23% Similarity=0.274 Sum_probs=164.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+||||+|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++||+|++.+++.+||.
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG--------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEecCCCCCCCCcHH
Confidence 56999999999999999999999999999999999999987 999999752 4699999999889999999
Q ss_pred HHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhH-------HHHHHHHHHhc-cchhhhHHHHHHHcCCCcccccc
Q 003389 264 ETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEI-------DAFMKAVAVAG-QETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 264 E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~-------~~~~~~~~~~~-~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
||+.++... .+. .....+...... .+..+. +...+.....+ .+....++.+++.+||+. .+..
T Consensus 89 e~l~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~ 160 (556)
T PRK11819 89 ENVEEGVAEVKAA------LDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAK 160 (556)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCc
Confidence 999886321 000 000000000000 010011 01111111101 112335678899999964 5666
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|++.| ...++.++||+|
T Consensus 161 ~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisH-d~~~~~~~~d~i 230 (556)
T PRK11819 161 VT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTH-DRYFLDNVAGWI 230 (556)
T ss_pred hh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeC-CHHHHHhhcCeE
Confidence 65 49999999999999999999999999999999999999999999986 247777655 456788899999
Q ss_pred EEEcCCeEE-EecChhhHH
Q 003389 415 ILLSEGQIV-YQGPRDNVL 432 (824)
Q Consensus 415 ilL~~G~iv-~~G~~~~~~ 432 (824)
++|++|+++ +.|+.++..
T Consensus 231 ~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 231 LELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEEeCCEEEEecCCHHHHH
Confidence 999999986 889877653
No 321
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.5e-33 Score=325.30 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=150.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|+++++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.++..
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 430 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD- 430 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-
Confidence 35999999999999999999999999999999999999997 9999999999876542 4679999998776654
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc-cCcc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV-GDEM 339 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v-g~~~ 339 (824)
|+++|+. ++.+.++ +.++++.+++.+..+... |-+.
T Consensus 431 ti~~n~~----------------------------~~~~~~~---------------~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 431 LIGPDEG----------------------------EHASLDN---------------AQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred hhhcccc----------------------------cchhHHH---------------HHHHHHHcCCchhhcccccccCC
Confidence 8888741 0000111 223455555543322221 1111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHH-HHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK-QMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~-~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
...||||||||++|||+|+.+|++|+|||||++||+.++..|.+.+. .+.. .++|+|++.|++ ++.+.||+|++|+
T Consensus 468 ~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~--~~~~~~d~i~~l~ 544 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDD--QYFELADQIIKLA 544 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 24699999999999999999999999999999999999999998765 4433 478999988876 4678999999999
Q ss_pred CCeEEEe
Q 003389 419 EGQIVYQ 425 (824)
Q Consensus 419 ~G~iv~~ 425 (824)
+|+++..
T Consensus 545 ~G~i~~~ 551 (555)
T TIGR01194 545 AGCIVKD 551 (555)
T ss_pred CCEEEEe
Confidence 9999864
No 322
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.9e-33 Score=332.24 Aligned_cols=204 Identities=24% Similarity=0.361 Sum_probs=173.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++|++|+..+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 46999999999999999999999999999999999999987 9999999998765321 3579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+|+.||+.+.....+.. .. +....+.++++.+||++..|+.++
T Consensus 98 ~~~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgl~~~~~~~~~ 143 (648)
T PRK10535 98 LSHLTAAQNVEVPAVYAGLE----------RK------------------------QRLLRAQELLQRLGLEDRVEYQPS 143 (648)
T ss_pred CCCCCHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhhhcCCcc
Confidence 99999999998754322210 00 011234668899999888887766
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.||||||||+.|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|++++.|++. ..+.||++++
T Consensus 144 -----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~ 215 (648)
T PRK10535 144 -----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIE 215 (648)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEE
Confidence 4999999999999999999999999999999999999999999999875 4889999887764 3467999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+++++|+.++..
T Consensus 216 l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 216 IRDGEIVRNPPAQEKV 231 (648)
T ss_pred EECCEEEeecCccccc
Confidence 9999999999998764
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.7e-32 Score=322.62 Aligned_cols=221 Identities=22% Similarity=0.268 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..++||+|++.+++.+||+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAPG--------IKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCCCCCCcHH
Confidence 46999999999999999999999999999999999999887 999999752 4699999999889999999
Q ss_pred HHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChh-------HHHHHHHHHHhcc-chhhhHHHHHHHcCCCcccccc
Q 003389 264 ETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPE-------IDAFMKAVAVAGQ-ETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 264 E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~-------~~~~~~~~~~~~~-~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
||+.++... .+. ............ .++.+ ..++.+.+...+. +....++++++.+|++. .++.
T Consensus 87 e~i~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 158 (552)
T TIGR03719 87 ENVEEGVAEIKDA------LDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDAD 158 (552)
T ss_pred HHHHHhhHHHHHH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCc
Confidence 999886321 000 000000000000 00000 0111111111111 11234677889999964 5666
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
++ .|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|+|++.| ....+..+||++
T Consensus 159 ~~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisH-d~~~~~~~~d~v 228 (552)
T TIGR03719 159 VT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTH-DRYFLDNVAGWI 228 (552)
T ss_pred hh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeC-CHHHHHhhcCeE
Confidence 55 49999999999999999999999999999999999999999999875 347777655 556788899999
Q ss_pred EEEcCCeEE-EecChhhHHH
Q 003389 415 ILLSEGQIV-YQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv-~~G~~~~~~~ 433 (824)
++|++|+++ +.|+.+++.+
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 999999976 7898876543
No 324
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-33 Score=322.35 Aligned_cols=217 Identities=21% Similarity=0.323 Sum_probs=167.1
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----Cce
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRT 246 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~ 246 (824)
+++.++... .+.+|+|||+.|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++..... ++.
T Consensus 251 i~~~~l~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 251 LEVRNLTSL---RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEeCcccc---cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHHHHHHCC
Confidence 444555433 235999999999999999999999999999999999999887 9999999988754322 345
Q ss_pred EEEEecCC---CCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 247 CAYISQHD---LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 247 i~yv~Q~d---~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
++|++|+. .+++++|+.+|..+.. ...... .++.+.. .....++.++
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~--------------~~~~~~~~~l 375 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNK---------------VGLLDNS--------------RMKSDTQWVI 375 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhccc---------------ccccCcH--------------HHHHHHHHHH
Confidence 89999985 3678889887743321 000000 0000000 0011345678
Q ss_pred HHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
+.+++. ...++.+++ |||||||||+||++++.+|++|||||||+|||+.++..+++.|+++.+ .+.|+|+++|
T Consensus 376 ~~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsH 449 (491)
T PRK10982 376 DSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISS 449 (491)
T ss_pred HhcCccCCCccccccc-----CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECC
Confidence 889995 456777664 999999999999999999999999999999999999999999999976 4889888765
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChh
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRD 429 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~ 429 (824)
+ .+++.++||++++|++|+++..++.+
T Consensus 450 d-~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 450 E-MPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred C-hHHHHhhCCEEEEEECCEEEEEEccc
Confidence 5 45788999999999999999777553
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-33 Score=323.69 Aligned_cols=220 Identities=19% Similarity=0.260 Sum_probs=164.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. +.++|++|++.+++.+||+
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~ 82 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN--------ERLGKLRQDQFAFEEFTVL 82 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC--------CEEEEEeccCCcCCCCcHH
Confidence 46999999999999999999999999999999999999887 999999873 3589999998888999999
Q ss_pred HHHHHhhh-hcCCchhhHHHHHhHHHHHhcC---CCCC--hhHHHHHH-HHHHhccchhhhHHHHHHHcCCCccc-cccc
Q 003389 264 ETLDFSGR-CLGVGTRYELLAELSRREKQAG---IKPD--PEIDAFMK-AVAVAGQETSLVTDYVLKILGLDICA-DTMV 335 (824)
Q Consensus 264 E~L~f~a~-~~~~~~~~~~~~~~~~~e~~~~---i~~~--~~~~~~~~-~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~v 335 (824)
|++.++.. ... ... ..+.... .... ....+... .....+.+....++.+|+.+||++.. +..+
T Consensus 83 e~l~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 153 (530)
T PRK15064 83 DTVIMGHTELWE------VKQ---ERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM 153 (530)
T ss_pred HHHHHhhHHHHH------HHH---HHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch
Confidence 99987531 000 000 0000000 0000 00000000 00011112223567889999997543 3444
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|++ .+.|||++.|+ ...+.++||+|+
T Consensus 154 ~-----~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd-~~~~~~~~d~i~ 223 (530)
T PRK15064 154 S-----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHD-RHFLNSVCTHMA 223 (530)
T ss_pred h-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCC-HHHHHhhcceEE
Confidence 4 5999999999999999999999999999999999999999999874 36788887654 557888999999
Q ss_pred EEcCCeE-EEecChhhHHH
Q 003389 416 LLSEGQI-VYQGPRDNVLE 433 (824)
Q Consensus 416 lL~~G~i-v~~G~~~~~~~ 433 (824)
+|++|++ ++.|+.++..+
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 58999887653
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.3e-33 Score=275.10 Aligned_cols=146 Identities=29% Similarity=0.425 Sum_probs=125.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++|++
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~-------- 81 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRDARRAGIAMVY-------- 81 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHHHHhcCeEEEE--------
Confidence 46999999999999999999999999999999999999987 9999999987643210 01111111
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
T Consensus 82 -------------------------------------------------------------------------------- 81 (163)
T cd03216 82 -------------------------------------------------------------------------------- 81 (163)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .+.|+|++.|++ .++.+.||++++|++
T Consensus 82 --qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~ 157 (163)
T cd03216 82 --QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRD 157 (163)
T ss_pred --ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 1999999999999999999999999999999999999999999999975 478888876654 467788999999999
Q ss_pred CeEEE
Q 003389 420 GQIVY 424 (824)
Q Consensus 420 G~iv~ 424 (824)
|++++
T Consensus 158 g~i~~ 162 (163)
T cd03216 158 GRVVG 162 (163)
T ss_pred CEEEe
Confidence 99875
No 327
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-32 Score=351.28 Aligned_cols=247 Identities=22% Similarity=0.265 Sum_probs=184.0
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
..+....++|+.+.++.+++. .+. ..........+.++|+++..+.
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~-----~~~--~~~~~~~~~~I~~~~vsF~y~~--------------------------- 626 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERI-----LAQ--NPPLQPGAPAISIKNGYFSWDS--------------------------- 626 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccc-----ccc--cCCcCCCCCcEEEEeeEEEcCC---------------------------
Confidence 455677788888877654431 000 0001111235778888775421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLH 256 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~ 256 (824)
..++++|+|+|++|++|+.++|+||+|||||||+++|.|.++|. +|.+. ..++.++||+|++.+
T Consensus 627 ----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~---------~~~~~Iayv~Q~p~L 690 (1495)
T PLN03232 627 ----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV---------VIRGSVAYVPQVSWI 690 (1495)
T ss_pred ----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE---------EecCcEEEEcCcccc
Confidence 11246899999999999999999999999999999999999986 77653 125679999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+. .||+|||.|+... .+.++++.+++++ .+. +.-.|++..+|.||
T Consensus 691 f~-gTIreNI~fg~~~-----------------------~~e~~~~vl~~~~---L~~--------di~~Lp~Gd~T~IG 735 (1495)
T PLN03232 691 FN-ATVRENILFGSDF-----------------------ESERYWRAIDVTA---LQH--------DLDLLPGRDLTEIG 735 (1495)
T ss_pred cc-ccHHHHhhcCCcc-----------------------CHHHHHHHHHHhC---CHH--------HHHhCCCCCCceec
Confidence 86 4999999997311 0111223333322 111 12457888999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+. +..||||||||++||||++.+|++++||||||+||+.++.+|++. ++... .++|+|++.|++. ....||+|+
T Consensus 736 e~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii 810 (1495)
T PLN03232 736 ER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRII 810 (1495)
T ss_pred CC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEE
Confidence 75 456999999999999999999999999999999999999999765 55543 4789999988864 578899999
Q ss_pred EEcCCeEEEecChhhHHH
Q 003389 416 LLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (824)
+|++|+++++|+++++.+
T Consensus 811 ~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 811 LVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEeCCEEEEecCHHHHHh
Confidence 999999999999998863
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-33 Score=323.75 Aligned_cols=201 Identities=22% Similarity=0.324 Sum_probs=163.3
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+++.++...+. ++.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|. +.++|+
T Consensus 320 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~~ 387 (530)
T PRK15064 320 LEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN--------ANIGYY 387 (530)
T ss_pred EEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEE
Confidence 44555544443 356999999999999999999999999999999999999887 999999873 469999
Q ss_pred ecCCC--CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 251 SQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 251 ~Q~d~--~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
+|+.. +++.+||+|++.+... .. .....++.+|+.+|+.
T Consensus 388 ~q~~~~~~~~~~t~~~~~~~~~~---~~------------------------------------~~~~~~~~~l~~~~l~ 428 (530)
T PRK15064 388 AQDHAYDFENDLTLFDWMSQWRQ---EG------------------------------------DDEQAVRGTLGRLLFS 428 (530)
T ss_pred cccccccCCCCCcHHHHHHHhcc---CC------------------------------------ccHHHHHHHHHHcCCC
Confidence 99863 4567999999864210 00 0011245688899994
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 329 -ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 329 -~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
+..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|+|+++|+ ..++
T Consensus 429 ~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd-~~~~ 498 (530)
T PRK15064 429 QDDIKKSVKV-----LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHD-REFV 498 (530)
T ss_pred hhHhcCcccc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCC-HHHH
Confidence 566777664 9999999999999999999999999999999999999999999886 3588887655 4578
Q ss_pred HhhcCeEEEEcCCeEE-EecChhhHH
Q 003389 408 YDLFDDIILLSEGQIV-YQGPRDNVL 432 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv-~~G~~~~~~ 432 (824)
.++||++++|++|+++ +.|+.+++.
T Consensus 499 ~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 499 SSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 8899999999999998 888877653
No 329
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-33 Score=288.64 Aligned_cols=216 Identities=26% Similarity=0.345 Sum_probs=174.0
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEe-cCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYIS-QHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~-Q~d 254 (824)
+.++....+.+||||+|++|++++++|||||||||+||+|+|++.|+ +|+|.+||++.-... .-+.+++|+ |.-
T Consensus 31 ~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ 107 (325)
T COG4586 31 HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDPFRRREEYLRSIGLVMGQKL 107 (325)
T ss_pred CchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCcchhHHHHHHHHHHHhhhhh
Confidence 33444566999999999999999999999999999999999999997 999999998643210 014566654 444
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+.-++.+.|++......+.++ +. +-..+.+.+.++|+|+...+.+
T Consensus 108 ql~Wdlp~~ds~~v~~~Iy~Ip--------------------d~--------------~F~~r~~~l~eiLdl~~~lk~~ 153 (325)
T COG4586 108 QLWWDLPALDSLEVLKLIYEIP--------------------DD--------------EFAERLDFLTEILDLEGFLKWP 153 (325)
T ss_pred eeeeechhhhhHHHHHHHHhCC--------------------HH--------------HHHHHHHHHHHHhcchhhhhhh
Confidence 4555556777776543333221 11 1123456788899998887766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
| |.||-|||.|+.+|.+|+.+|+||||||||=|||..++..|.+.|++..++.+.||+.++| ....+..+||||
T Consensus 154 v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH-~~~di~~lc~rv 227 (325)
T COG4586 154 V-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH-IFDDIATLCDRV 227 (325)
T ss_pred h-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEec-chhhHHHhhhhe
Confidence 5 4699999999999999999999999999999999999999999999999988999999865 566899999999
Q ss_pred EEEcCCeEEEecChhhHHHHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLEFFE 436 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~~f~ 436 (824)
++++.|+++|.|+.+++.+-|.
T Consensus 228 ~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 228 LLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EEeeCCcEeecccHHHHHHHhC
Confidence 9999999999999999877553
No 330
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-32 Score=276.53 Aligned_cols=220 Identities=24% Similarity=0.319 Sum_probs=182.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~yv~Q~d~~~~~ 259 (824)
+.||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++.+..+. .-+..-+|.|.-+|.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 4799999999999999999999999999999999998533 24599999999999877652 457788999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~ 338 (824)
.|+.+.|..+...+... ..+ ..+ ....+++.++.++++. .+++.|..
T Consensus 96 V~~~~fLr~a~n~~~~~---------------~~~-----~~~-----------~~~~~~e~~~~l~~~~~~l~R~vN~- 143 (251)
T COG0396 96 VTNSDFLRAAMNARRGA---------------RGI-----LPE-----------FIKELKEKAELLGLDEEFLERYVNE- 143 (251)
T ss_pred eeHHHHHHHHHHhhhcc---------------ccc-----cHH-----------HHHHHHHHHHHcCCCHHHhhcccCC-
Confidence 99999998765432110 000 011 1123566788999986 67777764
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc--CeEEE
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF--DDIIL 416 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf--D~iil 416 (824)
|+|||||||..|+.+++.+|++.+||||-||||..+-..|.+.+.++.. .+.++++++|.. .+.++. |++.|
T Consensus 144 ---GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~--rll~~i~pD~vhv 217 (251)
T COG0396 144 ---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQ--RLLDYIKPDKVHV 217 (251)
T ss_pred ---CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHH--HHHhhcCCCEEEE
Confidence 8999999999999999999999999999999999999999999999986 477888877754 566766 99999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCC
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCP 443 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p 443 (824)
|.+|+||..|.+ ++.++++..||.|-
T Consensus 218 l~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 218 LYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred EECCEEEecCCH-HHHHHHHHhchHHh
Confidence 999999999999 89999999999763
No 331
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.7e-32 Score=348.90 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=161.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCc-ceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS-GKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~s-G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|+|++|++|++++|+||+|||||||+++|.|.+++. + |+|.+ ++.++||+|++.++. .||
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l----------~~~Iayv~Q~p~Lfn-gTI 695 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVI----------RGTVAYVPQVSWIFN-ATV 695 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEE----------cCeEEEEcCccccCC-CCH
Confidence 45899999999999999999999999999999999999986 8 89975 346999999988876 599
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
||||.|+... .+.++++..+++++ +. +.-.|++..+|.||+. +..
T Consensus 696 reNI~fg~~~-----------------------d~e~y~~vl~a~~L---~~--------di~~LP~Gd~T~IGe~-G~~ 740 (1622)
T PLN03130 696 RDNILFGSPF-----------------------DPERYERAIDVTAL---QH--------DLDLLPGGDLTEIGER-GVN 740 (1622)
T ss_pred HHHHhCCCcc-----------------------cHHHHHHHHHHhCc---HH--------HHHhCCCcccccccCC-CCC
Confidence 9999997321 01112223333221 11 1335788899999975 456
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||||+..+|++++||||||+||+.++.+|. ++++... .++|+|+++|++ +....||+|++|++|+
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~ 816 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILVHEGM 816 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999886 4566554 478999998886 4678899999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
++++|+++++.+
T Consensus 817 i~e~Gt~~eL~~ 828 (1622)
T PLN03130 817 IKEEGTYEELSN 828 (1622)
T ss_pred EEEeCCHHHHHh
Confidence 999999998853
No 332
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=303.46 Aligned_cols=212 Identities=26% Similarity=0.297 Sum_probs=178.3
Q ss_pred cccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEE
Q 003389 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAY 249 (824)
Q Consensus 174 ~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~y 249 (824)
.++.+.+. ...+++|||++|++||+.||+|.||||||||+++|.|.++|+ +|+|.++|+++.-..|. --||+
T Consensus 8 ~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 8 RGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred eccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcE
Confidence 34433333 677999999999999999999999999999999999999998 99999999998654443 45899
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+||..+++++||.||+..+..-.... .+.+++ ....++++.+..||+-
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~-------~~~~~~------------------------~~~~i~~l~~~yGl~v 132 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGG-------LIDRRQ------------------------ARARIKELSERYGLPV 132 (501)
T ss_pred EeeccccccccchhhhhhhcCcccccc-------ccCHHH------------------------HHHHHHHHHHHhCCCC
Confidence 999999999999999999875421100 000000 1124567888999999
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
-.|.+|++ ||-||||||.|-++|..+|++|+|||||+-|-|....++++.|+++++ .|+|||+++ |-..|+.+
T Consensus 133 dp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~IT-HKL~Ev~~ 205 (501)
T COG3845 133 DPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFIT-HKLKEVMA 205 (501)
T ss_pred Cccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-ccHHHHHH
Confidence 99999987 999999999999999999999999999999999999999999999987 589998865 56779999
Q ss_pred hcCeEEEEcCCeEEEecC
Q 003389 410 LFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~ 427 (824)
+|||+.||..|+++-..+
T Consensus 206 iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 206 IADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhCeeEEEeCCeEEeeec
Confidence 999999999999875544
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.4e-32 Score=319.01 Aligned_cols=218 Identities=22% Similarity=0.245 Sum_probs=163.1
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC----CCCc
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQR 245 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~----~~~~ 245 (824)
++++.++...+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. .+|+|+++|+++... ..++
T Consensus 260 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCCHHHHHh
Confidence 455556654443 356999999999999999999999999999999999986541 289999999875321 1235
Q ss_pred eEEEEecCCCCCC--CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 246 TCAYISQHDLHHG--EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 246 ~i~yv~Q~d~~~~--~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
.++|++|++.++. ..|+++++.++.. ...+.. . ....+ ....++++++
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~-----------~~~~~--------------~~~~~~~~l~ 386 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFF-DSIGIY----Q-----------AVSDR--------------QQKLAQQWLD 386 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccc-cccccc----c-----------CCCHH--------------HHHHHHHHHH
Confidence 6999999865543 3577777654321 000000 0 00000 0123567899
Q ss_pred HcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 324 ILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 324 ~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
.+||.+ ..++.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|+++|+
T Consensus 387 ~~~l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd 461 (490)
T PRK10938 387 ILGIDKRTADAPFHS-----LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH 461 (490)
T ss_pred HcCCchhhccCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 999987 77877764 999999999999999999999999999999999999999999999987533467776655
Q ss_pred CchhHHh-hcCeEEEEcCCeEEEec
Q 003389 403 PAPETYD-LFDDIILLSEGQIVYQG 426 (824)
Q Consensus 403 ~~~e~~~-lfD~iilL~~G~iv~~G 426 (824)
..++.+ +||++++|++|++++.-
T Consensus 462 -~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 462 -AEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred -hhhhhhhhheeEEEecCCceEEee
Confidence 456666 59999999999988653
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.6e-32 Score=323.29 Aligned_cols=197 Identities=24% Similarity=0.277 Sum_probs=162.3
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
++..++...+. + ..|+++|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++ ..++|+
T Consensus 341 l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~----------~~i~y~ 405 (590)
T PRK13409 341 VEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE----------LKISYK 405 (590)
T ss_pred EEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe----------eeEEEe
Confidence 44444443332 2 2589999999999999999999999999999999999987 9999986 148999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc
Q 003389 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (824)
Q Consensus 251 ~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (824)
+|+..+.+.+||+|++.+...... ....++++|+.+||.+.
T Consensus 406 ~Q~~~~~~~~tv~e~l~~~~~~~~---------------------------------------~~~~~~~~L~~l~l~~~ 446 (590)
T PRK13409 406 PQYIKPDYDGTVEDLLRSITDDLG---------------------------------------SSYYKSEIIKPLQLERL 446 (590)
T ss_pred cccccCCCCCcHHHHHHHHhhhcC---------------------------------------hHHHHHHHHHHCCCHHH
Confidence 999888889999999986421000 00123568899999988
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.|+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..++|+|++.|+ ..++..+
T Consensus 447 ~~~~~~~-----LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD-~~~~~~~ 520 (590)
T PRK13409 447 LDKNVKD-----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD-IYMIDYI 520 (590)
T ss_pred HhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHh
Confidence 8877765 999999999999999999999999999999999999999999999987667888887665 5578889
Q ss_pred cCeEEEEcCCeEEEecCh
Q 003389 411 FDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~ 428 (824)
||++++|+ |++..+|..
T Consensus 521 aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 521 SDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred CCEEEEEc-Ccceeeeec
Confidence 99999996 588777663
No 335
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=1.6e-32 Score=270.42 Aligned_cols=213 Identities=26% Similarity=0.388 Sum_probs=178.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC-cccCCCCC----CceEEEEecCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG-HELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG-~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+..+|+|+||+|.|||+-+|+|||||||||+|++|+|+.+|. +|+|.++| .++..... +.-||--+|.+..|
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 356999999999999999999999999999999999999997 99999999 77765432 34588899999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
..+||+|||+.+.+.... .+..+..+. ..+...+++++|...||.+.+|...+.
T Consensus 94 e~ltV~eNLelA~~~~k~-----v~a~L~~r~---------------------~~~e~~ride~La~igL~~~~~~~A~~ 147 (249)
T COG4674 94 ENLTVRENLELALNRDKS-----VFASLFARL---------------------RAEERRRIDELLATIGLGDERDRLAAL 147 (249)
T ss_pred hhccHHHHHHHHhcCCcc-----hHHHhhhhc---------------------ChhHHHHHHHHHHHcccchhhhhhhhh
Confidence 999999999998543211 112221111 111234688999999999999988775
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
||-||||++.||..++.+|++|++|||++|+--..+.+.-++|++++. ..+++ ++.|+..-+.+++|+|-||
T Consensus 148 -----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsil-VVEHDM~Fvr~~A~~VTVl 219 (249)
T COG4674 148 -----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSIL-VVEHDMGFVREIADKVTVL 219 (249)
T ss_pred -----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEE-EEeccHHHHHHhhheeEEE
Confidence 999999999999999999999999999999999999999999999985 34444 4578888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++...|+.+++.
T Consensus 220 h~G~VL~EGsld~v~ 234 (249)
T COG4674 220 HEGSVLAEGSLDEVQ 234 (249)
T ss_pred eccceeecccHHHhh
Confidence 999999999998874
No 336
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.98 E-value=3.7e-32 Score=289.35 Aligned_cols=191 Identities=23% Similarity=0.274 Sum_probs=154.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe-----------eCCcccCCCCC-----CceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-----------YCGHELNEFVP-----QRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~-----------~nG~~~~~~~~-----~~~i 247 (824)
+.+|+|+| .+++|++++|+|||||||||||++|+|+++|+ +|+|. ++|+++..... ...+
T Consensus 14 ~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 89 (255)
T cd03236 14 SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKV 89 (255)
T ss_pred chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhHHhhhcccce
Confidence 35999999 59999999999999999999999999999997 99996 88887653211 1247
Q ss_pred EEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|++|+...++. ++.+++.+.... .+ ....+.++++.+||
T Consensus 90 ~~~~~~~~~~~~-~~~~~i~~~l~~---------------~~------------------------~~~~~~~~l~~~gl 129 (255)
T cd03236 90 IVKPQYVDLIPK-AVKGKVGELLKK---------------KD------------------------ERGKLDELVDQLEL 129 (255)
T ss_pred eeecchhccCch-HHHHHHHHHhch---------------hH------------------------HHHHHHHHHHHcCC
Confidence 899998777774 888888653210 00 01124568889999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
++..+..++ .||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ .++|+|++.|+ ..++
T Consensus 130 ~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd-~~~~ 202 (255)
T cd03236 130 RHVLDRNID-----QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHD-LAVL 202 (255)
T ss_pred chhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHH
Confidence 877776655 5999999999999999999999999999999999999999999999976 47888887655 4577
Q ss_pred HhhcCeEEEEcCCeEEEec
Q 003389 408 YDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv~~G 426 (824)
.++||+|++| +|+++++|
T Consensus 203 ~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 203 DYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHhCCEEEEE-CCCCCcce
Confidence 7899999999 46676654
No 337
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.9e-32 Score=279.01 Aligned_cols=209 Identities=28% Similarity=0.399 Sum_probs=166.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----CCCCceEEEEecC--CC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----FVPQRTCAYISQH--DL 255 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----~~~~~~i~yv~Q~--d~ 255 (824)
++++||+|||++|+|||-.+|+|||||||||||++|+|...|. +|.+.+.|+.... +..++.||+|+-. ..
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 3578999999999999999999999999999999999999886 9999999987643 2346889999743 34
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+.+..+|+|-+.-+. ....+..+ .+.+. .....+..+|+.+|+.+.+|...
T Consensus 119 ~~~~~~v~dvVlSg~-~~siG~y~----------------~~~~~------------~~~~~a~~lle~~g~~~la~r~~ 169 (257)
T COG1119 119 FRVRETVRDVVLSGF-FASIGIYQ----------------EDLTA------------EDLAAAQWLLELLGAKHLADRPF 169 (257)
T ss_pred cccccccceeeeecc-cccccccc----------------cCCCH------------HHHHHHHHHHHHcchhhhccCch
Confidence 455678888664432 21111100 00010 01123567899999999999888
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+. ||-||||||-|||||+.+|.+||||||++|||...+..+++.|.+++...+.+.++.+.|+.+|+-..|++++
T Consensus 170 ~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 170 GS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred hh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 75 9999999999999999999999999999999999999999999999875444444444556678999999999
Q ss_pred EEcCCeEEEecC
Q 003389 416 LLSEGQIVYQGP 427 (824)
Q Consensus 416 lL~~G~iv~~G~ 427 (824)
+|++|+++++|-
T Consensus 245 ll~~g~v~~~g~ 256 (257)
T COG1119 245 LLKEGEVVAQGK 256 (257)
T ss_pred EeeCCceeeccc
Confidence 999999999874
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=7e-32 Score=317.54 Aligned_cols=202 Identities=23% Similarity=0.272 Sum_probs=159.7
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+.+.++...+ +++.+|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..+||+
T Consensus 325 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~--------~~i~~v 392 (556)
T PRK11819 325 IEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET--------VKLAYV 392 (556)
T ss_pred EEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc--------eEEEEE
Confidence 3444444333 2356999999999999999999999999999999999999987 999999542 159999
Q ss_pred ecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 251 SQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 251 ~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
+|+. .+++.+||+||+.+.....+.. .. ......+++.+||..
T Consensus 393 ~q~~~~~~~~~tv~e~l~~~~~~~~~~-------------------~~-----------------~~~~~~~l~~~~l~~ 436 (556)
T PRK11819 393 DQSRDALDPNKTVWEEISGGLDIIKVG-------------------NR-----------------EIPSRAYVGRFNFKG 436 (556)
T ss_pred eCchhhcCCCCCHHHHHHhhccccccc-------------------cc-----------------HHHHHHHHHhCCCCh
Confidence 9986 6788999999998864321110 00 001234788999964
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..+..++ .|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|+|+++ |+..++.
T Consensus 437 ~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~tvi~vt-Hd~~~~~ 506 (556)
T PRK11819 437 GDQQKKVG-----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP----GCAVVIS-HDRWFLD 506 (556)
T ss_pred hHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC----CeEEEEE-CCHHHHH
Confidence 4676666 499999999999999999999999999999999999999999999862 3777655 4556788
Q ss_pred hhcCeEEEEcC-CeEE-EecChhh
Q 003389 409 DLFDDIILLSE-GQIV-YQGPRDN 430 (824)
Q Consensus 409 ~lfD~iilL~~-G~iv-~~G~~~~ 430 (824)
++||+|++|++ |+++ +.|+.++
T Consensus 507 ~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 507 RIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhCCEEEEEECCCeEEEecCCHHH
Confidence 89999999986 7876 5676554
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=1.1e-31 Score=315.74 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=159.0
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+.+.++...+. ++.+|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..++|+
T Consensus 323 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~--------~~i~~v 390 (552)
T TIGR03719 323 IEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET--------VKLAYV 390 (552)
T ss_pred EEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc--------eEEEEE
Confidence 34444443332 356999999999999999999999999999999999999887 999999542 259999
Q ss_pred ecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 251 SQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 251 ~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
+|+. .+++.+||.|++.++....+.. .. ......+++.+||..
T Consensus 391 ~q~~~~~~~~~tv~e~l~~~~~~~~~~--------------------~~----------------~~~~~~~l~~~~l~~ 434 (552)
T TIGR03719 391 DQSRDALDPNKTVWEEISGGLDIIQLG--------------------KR----------------EVPSRAYVGRFNFKG 434 (552)
T ss_pred eCCccccCCCCcHHHHHHhhccccccC--------------------cc----------------hHHHHHHHHhCCCCh
Confidence 9986 4788899999998864221110 00 001234788999964
Q ss_pred -cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 330 -~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++. .|+|+++| +...+.
T Consensus 435 ~~~~~~~~-----~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~viivsH-d~~~~~ 504 (552)
T TIGR03719 435 SDQQKKVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA----GCAVVISH-DRWFLD 504 (552)
T ss_pred hHhcCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC----CeEEEEeC-CHHHHH
Confidence 5676666 499999999999999999999999999999999999999999999872 37777655 456788
Q ss_pred hhcCeEEEEcC-CeEE-EecChhh
Q 003389 409 DLFDDIILLSE-GQIV-YQGPRDN 430 (824)
Q Consensus 409 ~lfD~iilL~~-G~iv-~~G~~~~ 430 (824)
++||++++|++ |+++ +.|+.++
T Consensus 505 ~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 505 RIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HhCCEEEEEECCCeEEEeCCCHHH
Confidence 89999999986 5876 5566543
No 340
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=6.6e-32 Score=269.99 Aligned_cols=208 Identities=25% Similarity=0.331 Sum_probs=169.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC---ceEEEEecCC--CC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHD--LH 256 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~i~yv~Q~d--~~ 256 (824)
..+++|+++|++|..|+++-|+|.||||||||+|+|+|.+.|+ +|+|.++|.+++..... ..++-|+|++ ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 3567999999999999999999999999999999999999997 99999999999876543 3467789996 46
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH--HcCCCcccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK--ILGLDICADTM 334 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--~lgL~~~~dt~ 334 (824)
.++|||.||+..+. ++|...-+ ...+..+.+ +.+ .+-++ -+||++..++.
T Consensus 94 ~~~lTieENl~la~-~Rg~~rgl--~~~ln~~~~----------~~f---------------~~~l~~l~lgLenrL~~~ 145 (263)
T COG1101 94 APELTIEENLALAE-SRGKKRGL--SSALNERRR----------SSF---------------RERLARLGLGLENRLSDR 145 (263)
T ss_pred cccccHHHHHHHHH-hcCccccc--chhhhHHHH----------HHH---------------HHHHhhcccchhhhhcCh
Confidence 89999999999864 33321110 010100000 001 11233 35778899999
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+|- |||||||-|+++.|.+.+|++|||||=|++|||.++..+++.-.++..+.+.|.++++| ......++-+|.
T Consensus 146 igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTH-nm~~Al~yG~Rl 219 (263)
T COG1101 146 IGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH-NMEDALDYGNRL 219 (263)
T ss_pred hhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEec-cHHHHHhhCCeE
Confidence 985 99999999999999999999999999999999999999999999999988899999765 567889999999
Q ss_pred EEEcCCeEEEec
Q 003389 415 ILLSEGQIVYQG 426 (824)
Q Consensus 415 ilL~~G~iv~~G 426 (824)
|+|++|+||.+-
T Consensus 220 ImLh~G~IvlDv 231 (263)
T COG1101 220 IMLHSGKIVLDV 231 (263)
T ss_pred EEEeCCeEEEEc
Confidence 999999999763
No 341
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=279.60 Aligned_cols=172 Identities=27% Similarity=0.350 Sum_probs=149.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++||||+|++||.++|+|.||||||||-++|.|+++|+ +|+|.++|+++.... +
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~--------------------~ 82 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLS--------------------K 82 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcc--------------------h
Confidence 57999999999999999999999999999999999999997 999999999876542 0
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rg 342 (824)
+ + ....+.++|+.+||.. .++ .+++.
T Consensus 83 ~------------------------~------------------------~~~~v~elL~~Vgl~~~~~~-----ryPhe 109 (268)
T COG4608 83 E------------------------E------------------------RRERVLELLEKVGLPEEFLY-----RYPHE 109 (268)
T ss_pred h------------------------H------------------------HHHHHHHHHHHhCCCHHHhh-----cCCcc
Confidence 0 0 0113566888899854 344 34567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
+|||||||+.|||||+.+|+++++|||+|.||.+.+.+|+++|+++.++.+.|.+.+.| +...+..++|||.+|..|+|
T Consensus 110 lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsH-DL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH-DLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEE-EHHhhhhhcccEEEEecCce
Confidence 99999999999999999999999999999999999999999999999988999988765 56678889999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
|+.|+.+++.
T Consensus 189 VE~g~~~~~~ 198 (268)
T COG4608 189 VEIGPTEEVF 198 (268)
T ss_pred eEecCHHHHh
Confidence 9999999884
No 342
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=1.1e-30 Score=312.41 Aligned_cols=183 Identities=14% Similarity=0.236 Sum_probs=145.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.+|+|+|++|++||.++|+||||||||||+++|+|+++++ +|+|.+++ ++.++||+|++.+++. ||+
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~ 532 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA--------KGKLFYVPQRPYMTLG-TLR 532 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC--------CCcEEEECCCCCCCCc-CHH
Confidence 46999999999999999999999999999999999999886 89998864 4569999999887776 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc------cccccC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA------DTMVGD 337 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~------dt~vg~ 337 (824)
||+.++...... . .++... ..+.++++.+||++.. ||..+
T Consensus 533 eni~~~~~~~~~----------~--------~~~~~~---------------~~i~~~l~~~~l~~~~~~~~g~~~~~~- 578 (659)
T TIGR00954 533 DQIIYPDSSEDM----------K--------RRGLSD---------------KDLEQILDNVQLTHILEREGGWSAVQD- 578 (659)
T ss_pred HHHhcCCChhhh----------h--------ccCCCH---------------HHHHHHHHHcCCHHHHhhcCCcccccc-
Confidence 999886422110 0 000000 1234456666665543 33332
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
....||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+++ .++|+|++.|++. ..+.||++++|
T Consensus 579 -~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l 651 (659)
T TIGR00954 579 -WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYM 651 (659)
T ss_pred -cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEE
Confidence 2457999999999999999999999999999999999999999998876 2789999888764 45889999999
Q ss_pred cC
Q 003389 418 SE 419 (824)
Q Consensus 418 ~~ 419 (824)
+.
T Consensus 652 ~~ 653 (659)
T TIGR00954 652 DG 653 (659)
T ss_pred eC
Confidence 63
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-31 Score=315.39 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=160.9
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
++.+.++...+ +++.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+++. ..+||
T Consensus 312 ~l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~--------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG--------IKLGY 379 (638)
T ss_pred eEEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC--------EEEEE
Confidence 34555555444 3457999999999999999999999999999999999999887 999999742 25899
Q ss_pred EecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 250 ISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 250 v~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
++|+. .+.+..||.+++.-. . +. .....+..+|+.+++
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~---~----------------------~~---------------~~~~~~~~~L~~~~l 419 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARL---A----------------------PQ---------------ELEQKLRDYLGGFGF 419 (638)
T ss_pred ecCcchhhCCccchHHHHHHHh---C----------------------ch---------------hhHHHHHHHHHHcCC
Confidence 99974 344556777665210 0 00 001124568899999
Q ss_pred C-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 328 D-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 328 ~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
. ...++.+++ |||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ ++|+|+++| +...
T Consensus 420 ~~~~~~~~~~~-----LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~gtvi~vSH-d~~~ 489 (638)
T PRK10636 420 QGDKVTEETRR-----FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----EGALVVVSH-DRHL 489 (638)
T ss_pred ChhHhcCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCeEEEEeC-CHHH
Confidence 6 367777764 9999999999999999999999999999999999999999999986 348777655 5567
Q ss_pred HHhhcCeEEEEcCCeEE-EecChhhHHH
Q 003389 407 TYDLFDDIILLSEGQIV-YQGPRDNVLE 433 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv-~~G~~~~~~~ 433 (824)
+.++||+|++|++|+++ +.|+.++..+
T Consensus 490 ~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 490 LRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 88899999999999997 8899887643
No 344
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=1.1e-30 Score=336.21 Aligned_cols=198 Identities=23% Similarity=0.325 Sum_probs=159.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.++ +.||+
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g----------~i~yv~Q~~~l~-~~Ti~ 716 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG----------SVAYVPQQAWIQ-NDSLR 716 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC----------EEEEEcCCcccc-CCcHH
Confidence 45999999999999999999999999999999999999987 99999987 489999998765 57999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCCccccccccCccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~~~rg 342 (824)
||+.|+.... +.+.++..++++ +.+.+ .+++..+|.+|+. +..
T Consensus 717 eNI~~g~~~~-----------------------~~~~~~~~~~~~------------l~~~l~~~~~g~~t~ig~~-g~~ 760 (1522)
T TIGR00957 717 ENILFGKALN-----------------------EKYYQQVLEACA------------LLPDLEILPSGDRTEIGEK-GVN 760 (1522)
T ss_pred HHhhcCCccC-----------------------HHHHHHHHHHhC------------CHHHHHhcCCCCCceecCC-CCC
Confidence 9999863210 001111222211 11222 2456678899864 567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH-HhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV-HILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~-~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
||||||||++||||++.+|++++|||||++||+.++..+.+.+.+.. ...++|+|+++|++. ....||+|++|++|+
T Consensus 761 LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~ 838 (1522)
T TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGK 838 (1522)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCe
Confidence 99999999999999999999999999999999999999999997532 124789999888764 446699999999999
Q ss_pred EEEecChhhHHH
Q 003389 422 IVYQGPRDNVLE 433 (824)
Q Consensus 422 iv~~G~~~~~~~ 433 (824)
++.+|+++++.+
T Consensus 839 i~~~g~~~~l~~ 850 (1522)
T TIGR00957 839 ISEMGSYQELLQ 850 (1522)
T ss_pred EEeeCCHHHHHh
Confidence 999999988753
No 345
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=280.75 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=176.9
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCCcceEeeCCcccCCCCC-------CceEEEEec
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQ 252 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~--~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q 252 (824)
+...++++|||.|++||.+||+|.||||||-..+.+.|+++.. ...+|+|.|+|+++-.... -..|++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3467999999999999999999999999999999999998752 3458999999998754332 247999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc
Q 003389 253 HD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (824)
Q Consensus 253 ~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (824)
++ .+.|-.|+..-+.-..+++.. +++++ ...++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~~~~~------------------------Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------LSRAA------------------------ARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------ccHHH------------------------HHHHHHHHHHHcCCCch
Confidence 97 456777888777666555321 11111 12245668899999865
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
.... +.++.+|||||||||.||.||+++|++|+.||||++||...+.+|+++|+++.++.|..+++++ |+..-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfIT-HDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT-HDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEe-ccHHHHHHh
Confidence 5433 4678889999999999999999999999999999999999999999999999998899888865 556678889
Q ss_pred cCeEEEEcCCeEEEecChhhHH
Q 003389 411 FDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 411 fD~iilL~~G~iv~~G~~~~~~ 432 (824)
+|+|.||.+|++|++|+++++.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHh
Confidence 9999999999999999998874
No 346
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=2.5e-31 Score=326.20 Aligned_cols=208 Identities=27% Similarity=0.399 Sum_probs=185.9
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC----CCceEEEEecCCCCCCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~~lT 261 (824)
+++++|+.|++||+.+++|||||||||++|+|.|..+|+ +|+++++|+++.... .++.+||+||+|.+.++||
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT 656 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELT 656 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCchhhhhhhcc
Confidence 999999999999999999999999999999999999997 999999999986422 3577999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
.||+|.+.++++|.... ++ ...++.+++.+||.+++|+.++.
T Consensus 657 ~rEhL~~~arlrG~~~~--------------------di--------------~~~v~~ll~~~~L~~~~~~~~~~---- 698 (885)
T KOG0059|consen 657 GREHLEFYARLRGLPRS--------------------DI--------------GSAIEKLLRLVGLGPYANKQVRT---- 698 (885)
T ss_pred HHHHHHHHHHHcCCChh--------------------HH--------------HHHHHHHHHHcCChhhhccchhh----
Confidence 99999999999986321 11 12467899999999999999875
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
+|||+|||+++|.+|+++|++++|||||+|+||.++..+.+.++++.+. ++.+|++ +|..+|...+|||+.+|.+|+
T Consensus 699 -ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLT-SHsMeE~EaLCtR~aImv~G~ 775 (885)
T KOG0059|consen 699 -YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILT-SHSMEEAEALCTRTAIMVIGQ 775 (885)
T ss_pred -CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEE-cCCHHHHHHHhhhhheeecCe
Confidence 9999999999999999999999999999999999999999999999873 5555554 577899999999999999999
Q ss_pred EEEecChhhHHHHHHH
Q 003389 422 IVYQGPRDNVLEFFEH 437 (824)
Q Consensus 422 iv~~G~~~~~~~~f~~ 437 (824)
+.-.|+++++...|..
T Consensus 776 l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 776 LRCIGSPQELKSRYGS 791 (885)
T ss_pred eEEecChHHHHhhcCC
Confidence 9999999999877653
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=8.2e-31 Score=312.80 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=161.7
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
++.+.++...+. ++++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ |.++ .++|
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~~-------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTKL-------EVAY 386 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCCc-------EEEE
Confidence 345556554443 457999999999999999999999999999999999999887 999998 5332 5999
Q ss_pred EecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 250 ISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 250 v~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
++|+. .+++.+||.|++.+....... . . ....+..+|+.+++.
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~---------------------~-~--------------~~~~~~~~l~~~~l~ 430 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMV---------------------N-G--------------RPRHVLGYLQDFLFH 430 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccc---------------------c-c--------------hHHHHHHHHHhcCCC
Confidence 99975 578899999999875310000 0 0 001235578888985
Q ss_pred -ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 329 -ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 329 -~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
+..++.++. |||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|+|+++| +...+
T Consensus 431 ~~~~~~~~~~-----LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSH-d~~~~ 500 (635)
T PRK11147 431 PKRAMTPVKA-----LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSH-DRQFV 500 (635)
T ss_pred HHHHhChhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEEC-CHHHH
Confidence 456777764 9999999999999999999999999999999999999999999875 457777665 45678
Q ss_pred HhhcCeEEEEc-CCeEE-EecChhhH
Q 003389 408 YDLFDDIILLS-EGQIV-YQGPRDNV 431 (824)
Q Consensus 408 ~~lfD~iilL~-~G~iv-~~G~~~~~ 431 (824)
..+||++++|+ +|+++ |.|+.++.
T Consensus 501 ~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 501 DNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 88999999997 89986 45665543
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=7.1e-30 Score=261.87 Aligned_cols=206 Identities=24% Similarity=0.279 Sum_probs=174.2
Q ss_pred cccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCC
Q 003389 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 259 (824)
+.....+|+||||++++||.++|+|+||||||||||+|+|.++|+ +|+|.++|+-..-+ .-.-.+.|+
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v~~li---------~lg~Gf~pe 103 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKVAPLI---------ELGAGFDPE 103 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceEehhh---------hcccCCCcc
Confidence 445677999999999999999999999999999999999999998 99999999643211 111245577
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+|.+||+.+-+.+.|.. +.+ .+...+++.+.-+|.+..|.+|.
T Consensus 104 lTGreNi~l~~~~~G~~----------~~e------------------------i~~~~~eIieFaELG~fi~~Pvk--- 146 (249)
T COG1134 104 LTGRENIYLRGLILGLT----------RKE------------------------IDEKVDEIIEFAELGDFIDQPVK--- 146 (249)
T ss_pred cchHHHHHHHHHHhCcc----------HHH------------------------HHHHHHHHHHHHHHHHHhhCchh---
Confidence 89999999988777653 111 12346778888889888888875
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.+|.|++-|++.+.+...+|++|++||..+-.|+.-..+-.+.++++.++ +.|+|++.|+ ...+.++||++++|++
T Consensus 147 --tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd-~~~I~~~Cd~~i~l~~ 222 (249)
T COG1134 147 --TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHD-LGAIKQYCDRAIWLEH 222 (249)
T ss_pred --hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECC-HHHHHHhcCeeEEEeC
Confidence 59999999999999999999999999999999999999999999999764 6788777654 5589999999999999
Q ss_pred CeEEEecChhhHHHHHHHc
Q 003389 420 GQIVYQGPRDNVLEFFEHM 438 (824)
Q Consensus 420 G~iv~~G~~~~~~~~f~~~ 438 (824)
|++.+.|.++++.++|+..
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999988764
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=2.2e-30 Score=310.52 Aligned_cols=204 Identities=19% Similarity=0.212 Sum_probs=157.4
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+.+.++...+.+.+.+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.+++. ..++|+
T Consensus 509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~--------~~igyv 577 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK--------VRMAVF 577 (718)
T ss_pred EEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc--------eeEEEE
Confidence 455555555433446999999999999999999999999999999999999987 999998752 469999
Q ss_pred ecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-
Q 003389 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI- 329 (824)
Q Consensus 251 ~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~- 329 (824)
+|+. ...+++.++..+...... +.. ....+..+|+.+||.+
T Consensus 578 ~Q~~--~~~l~~~~~~~~~~~~~~---------------------~~~---------------~~~~i~~~L~~~gl~~~ 619 (718)
T PLN03073 578 SQHH--VDGLDLSSNPLLYMMRCF---------------------PGV---------------PEQKLRAHLGSFGVTGN 619 (718)
T ss_pred eccc--cccCCcchhHHHHHHHhc---------------------CCC---------------CHHHHHHHHHHCCCChH
Confidence 9974 344566666432210000 000 0112456888999973
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..+..++ .|||||||||+||++|+.+|++|||||||+|||+.+...+++.|++. +.|+|+++|+ ...+..
T Consensus 620 ~~~~~~~-----~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~gtvIivSHd-~~~i~~ 689 (718)
T PLN03073 620 LALQPMY-----TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----QGGVLMVSHD-EHLISG 689 (718)
T ss_pred HhcCCcc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----CCEEEEEECC-HHHHHH
Confidence 5566655 59999999999999999999999999999999999999998888764 2477777654 557888
Q ss_pred hcCeEEEEcCCeEE-EecChhhHHH
Q 003389 410 LFDDIILLSEGQIV-YQGPRDNVLE 433 (824)
Q Consensus 410 lfD~iilL~~G~iv-~~G~~~~~~~ 433 (824)
+||++++|.+|+++ +.|+.++..+
T Consensus 690 ~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 690 SVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999998 7888766443
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.9e-30 Score=251.60 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=173.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC--C-CCceEEEEecCCC--CC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V-PQRTCAYISQHDL--HH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--~-~~~~i~yv~Q~d~--~~ 257 (824)
...+.+.|||+++.|+.+|++|.||||||||.|+|+|..+|+ +|+|.+||+++.-- . ..+.|-+++||+. +-
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 355899999999999999999999999999999999999997 99999999987532 2 2377999999974 56
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC-Ccccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~vg 336 (824)
|.+.+..-|++..++..- +.. ...++++-+.|+..|| ++.++-.
T Consensus 102 PRl~iGqiLd~PL~l~T~---------~~~------------------------~~R~~~i~~TL~~VGL~Pdhan~~-- 146 (267)
T COG4167 102 PRLRIGQILDFPLRLNTD---------LEP------------------------EQRRKQIFETLRMVGLLPDHANYY-- 146 (267)
T ss_pred hhhhhhhHhcchhhhccc---------CCh------------------------HHHHHHHHHHHHHhccCccccccc--
Confidence 788888888776554321 000 1112345567889998 4555544
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..||-||||||++||||+.+|++++.||...+||.+.+.++++++-++.++.|.+-|.+ .|+..-+..++|+|+|
T Consensus 147 ---~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV-~QhlG~iKHi~D~viV 222 (267)
T COG4167 147 ---PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV-TQHIGMIKHISDQVLV 222 (267)
T ss_pred ---hhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEE-echhhHhhhhcccEEE
Confidence 356999999999999999999999999999999999999999999999999888888875 5777788899999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|++|+.|.+.+++
T Consensus 223 M~EG~vvE~G~t~~v~ 238 (267)
T COG4167 223 MHEGEVVERGSTADVL 238 (267)
T ss_pred EecCceeecCChhhhh
Confidence 9999999999999884
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7e-30 Score=304.44 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=156.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++.+|+||||.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.. .++|++|+.... ..|+
T Consensus 13 ~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~--------~i~~~~q~~~~~-~~~~ 80 (638)
T PRK10636 13 VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW--------QLAWVNQETPAL-PQPA 80 (638)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC--------EEEEEecCCCCC-CCCH
Confidence 356999999999999999999999999999999999999887 9999998842 489999965433 3577
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHH----HhccchhhhHHHHHHHcCCC-ccccccccC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA----VAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (824)
.+.+.-.... ...+............ ...+..... ..+.+....++.+|+.+||. +..+..+++
T Consensus 81 ~~~v~~~~~~---------~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 149 (638)
T PRK10636 81 LEYVIDGDRE---------YRQLEAQLHDANERND--GHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSD 149 (638)
T ss_pred HHHHHHhhHH---------HHHHHHHHHHHhccCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhh
Confidence 6655422100 0111110000000000 000000000 01112234577899999997 567777765
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|+|++. |+...+.++||+|++|
T Consensus 150 -----LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivs-Hd~~~l~~~~d~i~~L 219 (638)
T PRK10636 150 -----FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILIS-HDRDFLDPIVDKIIHI 219 (638)
T ss_pred -----cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEe-CCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999875 45777765 5566788899999999
Q ss_pred cCCeEE-EecChhhH
Q 003389 418 SEGQIV-YQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv-~~G~~~~~ 431 (824)
++|+++ |.|+.+..
T Consensus 220 ~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 220 EQQSLFEYTGNYSSF 234 (638)
T ss_pred eCCEEEEecCCHHHH
Confidence 999996 67776644
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.4e-30 Score=258.30 Aligned_cols=157 Identities=24% Similarity=0.300 Sum_probs=127.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
.+++|+|+|++|++|++++|+|||||||||||++|.+ . +|+|.++|... .. .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~-~~-~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLP-KF-SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCccc-cc-ccccEEEEhH----------
Confidence 3569999999999999999999999999999999953 2 89999988732 21 2334778776
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r 341 (824)
.| .++.++|.. ..+..+ +
T Consensus 68 ~~--------------------------------------------------------~l~~~~L~~~~~~~~~-----~ 86 (176)
T cd03238 68 LQ--------------------------------------------------------FLIDVGLGYLTLGQKL-----S 86 (176)
T ss_pred HH--------------------------------------------------------HHHHcCCCccccCCCc-----C
Confidence 11 234566653 345444 4
Q ss_pred CCCHHHHHHHHHHHHHHcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 342 GISGGQKKRVTTGEMLVGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++. + .+.||++++|.+
T Consensus 87 ~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~-~-~~~~d~i~~l~~ 163 (176)
T cd03238 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLD-V-LSSADWIIDFGP 163 (176)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-H-HHhCCEEEEECC
Confidence 5999999999999999999 999999999999999999999999999975 5889999887764 4 468999999966
Q ss_pred CeE
Q 003389 420 GQI 422 (824)
Q Consensus 420 G~i 422 (824)
|+.
T Consensus 164 g~~ 166 (176)
T cd03238 164 GSG 166 (176)
T ss_pred CCC
Confidence 443
No 353
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-30 Score=255.44 Aligned_cols=179 Identities=26% Similarity=0.366 Sum_probs=156.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~ 259 (824)
....++.++||++.+||++-|.|||||||||||++|+|++.|+ +|+|.++|.+++... .++.+-|+..++.+-++
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 3567999999999999999999999999999999999999998 999999999887643 23668899988999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
|||.|||.|.-+..+.. ....+.+.++.+||....|.+++.
T Consensus 90 LTa~ENL~F~~~~~~~~-------------------------------------~~~~i~~Al~~vgL~g~~dlp~~~-- 130 (209)
T COG4133 90 LTALENLHFWQRFHGSG-------------------------------------NAATIWEALAQVGLAGLEDLPVGQ-- 130 (209)
T ss_pred hhHHHHHHHHHHHhCCC-------------------------------------chhhHHHHHHHcCcccccccchhh--
Confidence 99999999976554321 011245678899999999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
||-||||||+|||.++.++++-+||||+++||......+-..+..-++ .|..||.++|||.+.
T Consensus 131 ---LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 131 ---LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred ---cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 999999999999999999999999999999999999999999998886 588899999999754
No 354
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=5.2e-30 Score=329.20 Aligned_cols=196 Identities=22% Similarity=0.336 Sum_probs=159.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++. ||+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g----------~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG----------RISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC----------EEEEEeCCCccCCc-cHH
Confidence 46999999999999999999999999999999999999987 99999988 38999999988874 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+.|+..... ...++..+++++ +..++. +++..+|.+|+. +..|
T Consensus 505 eNI~~g~~~~~-----------------------~~~~~~~~~~~L---------~~~l~~--l~~g~~t~vg~~-g~~L 549 (1490)
T TIGR01271 505 DNIIFGLSYDE-----------------------YRYTSVIKACQL---------EEDIAL--FPEKDKTVLGEG-GITL 549 (1490)
T ss_pred HHHHhccccch-----------------------HHHHHHHHHHhH---------HHHHHh--ccccccccccCc-CCCc
Confidence 99998742110 011112222211 112222 344567888865 5679
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||+||||++.+|++++|||||+|||+.++.+|.+ +++++. .++|+|+++|++. ....||+|++|++|++
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~--~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLE--HLKKADKILLLHEGVC 625 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChH--HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999997 467765 3789999988875 3456999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
+..|+.+++.
T Consensus 626 ~~~g~~~~l~ 635 (1490)
T TIGR01271 626 YFYGTFSELQ 635 (1490)
T ss_pred EEEcCHHHHH
Confidence 9999998875
No 355
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=2.6e-30 Score=252.06 Aligned_cols=132 Identities=31% Similarity=0.442 Sum_probs=118.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
.++|+++|+.+++||+++|+||||||||||+++|+|+++|. +|+|+++|+ +.++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~--------~~i~~~~~----------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST--------VKIGYFEQ----------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe--------EEEEEEcc-----------
Confidence 35999999999999999999999999999999999999987 999999984 34566554
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|
T Consensus 71 -------------------------------------------------------------------------------l 71 (144)
T cd03221 71 -------------------------------------------------------------------------------L 71 (144)
T ss_pred -------------------------------------------------------------------------------C
Confidence 7
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|+||+||++|||+|+.+|++++|||||+|||+.+...+.+.|+++ +.|++++.|+ .+++.++||++++|++|+
T Consensus 72 S~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~-~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHD-RYFLDQVATKIIELEDGK 144 (144)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECC-HHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999999986 3588887655 457778999999999985
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.9e-30 Score=258.94 Aligned_cols=147 Identities=25% Similarity=0.311 Sum_probs=126.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++.+++++ +++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+.
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~---------i~~~~q~~-------- 70 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT---------PVYKPQYI-------- 70 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE---------EEEEcccC--------
Confidence 45688885 899999999999999999999999999999987 9999999853 67776620
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.
T Consensus 71 -------------------------------------------------------------------------------~ 71 (177)
T cd03222 71 -------------------------------------------------------------------------------D 71 (177)
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.++||++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD-LAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHHhCCEEEEEcCCCc
Confidence 899999999999999999999999999999999999999999999876434788887665 4577789999999998877
Q ss_pred EEe--cChhh
Q 003389 423 VYQ--GPRDN 430 (824)
Q Consensus 423 v~~--G~~~~ 430 (824)
+++ |++..
T Consensus 151 ~~~~~~~~~~ 160 (177)
T cd03222 151 VYGIASQPKG 160 (177)
T ss_pred cceeccCCcc
Confidence 655 55543
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.3e-29 Score=302.61 Aligned_cols=221 Identities=26% Similarity=0.315 Sum_probs=155.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+||||.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.. .++|++|++......||.
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL--------IVARLQQDPPRNVEGTVY 84 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC--------EEEEeccCCCCCCCCCHH
Confidence 56999999999999999999999999999999999999887 9999998731 368888875444456888
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCCh-hHHHHHHH---HH-HhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP-EIDAFMKA---VA-VAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~-~~~~~~~~---~~-~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
+++..+.... .........-.......+.. .+..+... .. ..+.+....++.+++.+||.. +..++
T Consensus 85 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~-- 155 (635)
T PRK11147 85 DFVAEGIEEQ-----AEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALS-- 155 (635)
T ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCchh--
Confidence 8764321100 00000000000000000000 00000000 00 001122345778999999963 55554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|++. |+...+.++||+|++|+
T Consensus 156 ---~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivs-Hd~~~l~~~~d~i~~L~ 227 (635)
T PRK11147 156 ---SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFIS-HDRSFIRNMATRIVDLD 227 (635)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEe-CCHHHHHHhcCeEEEEE
Confidence 59999999999999999999999999999999999999999999986 24777765 45557888999999999
Q ss_pred CCeEE-EecChhhHH
Q 003389 419 EGQIV-YQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv-~~G~~~~~~ 432 (824)
+|+++ |.|+.++..
T Consensus 228 ~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 228 RGKLVSYPGNYDQYL 242 (635)
T ss_pred CCEEEEecCCHHHHH
Confidence 99997 568776543
No 358
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=245.40 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=152.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
+.-.|-|||++|.+||++-|||||||||||||.-+.|.+.+....+|++++|++.++.... +|++|.++||+.+||+++
T Consensus 14 g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 4558999999999999999999999999999999999999988899999999999886543 689999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|.+||.|+.-..-.| + ..+..++..|+..||+...+.-+ .
T Consensus 94 Vg~Nl~fAlp~~~KG-----------~------------------------aRr~~a~aAL~~~gL~g~f~~dP-----~ 133 (213)
T COG4136 94 VGQNLLFALPATLKG-----------N------------------------ARRNAANAALERSGLDGAFHQDP-----A 133 (213)
T ss_pred cccceEEecCccccc-----------H------------------------HHHhhHHHHHHHhccchhhhcCh-----h
Confidence 999999975321111 0 01123566788999998887654 4
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..-.-.+..|..+|.++|..
T Consensus 134 tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred hcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 69999999999999999999999999999999999999998887766666788777776653
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=5e-30 Score=302.11 Aligned_cols=187 Identities=24% Similarity=0.290 Sum_probs=151.3
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEe-----------eCCcccCCCC-----
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT-----------YCGHELNEFV----- 242 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~-----------~nG~~~~~~~----- 242 (824)
.+.++..+|++++ .+++|++++|+||||||||||||+|+|+++|+ +|+|. ++|+++....
T Consensus 82 ~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 82 RYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred EecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 3333346999999 99999999999999999999999999999997 99997 9998875321
Q ss_pred CCceEEEEecCCCCCCC---CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHH
Q 003389 243 PQRTCAYISQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTD 319 (824)
Q Consensus 243 ~~~~i~yv~Q~d~~~~~---lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (824)
.+..+++.+|.....+. .||+|++.+.. ....++
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-------------------------------------------~~~~~~ 194 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-------------------------------------------ERGKLD 194 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhhh-------------------------------------------HHHHHH
Confidence 12335666665433332 39998885310 001246
Q ss_pred HHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 003389 320 YVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 320 ~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIis 399 (824)
++++.+||.+..|+.+++ |||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++++ +.|+|++
T Consensus 195 ~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIiv 267 (590)
T PRK13409 195 EVVERLGLENILDRDISE-----LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVV 267 (590)
T ss_pred HHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEE
Confidence 688999999888888775 999999999999999999999999999999999999999999999975 7888887
Q ss_pred EccCchhHHhhcCeEEEEcCC
Q 003389 400 LLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL~~G 420 (824)
.|+ ..++..++|+|++|.+|
T Consensus 268 sHd-~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 268 EHD-LAVLDYLADNVHIAYGE 287 (590)
T ss_pred eCC-HHHHHHhCCEEEEEeCC
Confidence 654 55788899999999864
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=3.5e-29 Score=308.42 Aligned_cols=246 Identities=24% Similarity=0.342 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
.+....++|+.+.+..+.... +...+.+.+.+...+.++|.+..-+
T Consensus 484 vqa~VS~~Ri~~fl~~~e~~~-----~~~~~~~~~~~~~~i~i~~~sfsW~----------------------------- 529 (1381)
T KOG0054|consen 484 VQAKVSLKRLKEFLLSEELDP-----DSVERSPDEAGENAIEIKNGSFSWD----------------------------- 529 (1381)
T ss_pred HHHHHHHHHHHHHhcCcccCc-----cccccCCCCCCCceEEEeeeeEecC-----------------------------
Confidence 456777788877776543311 1111234445555677777665421
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 257 (824)
.....+.|+|||++|++|+++||+||-|||||+||.+|.|-++.. +|+|.++|. ++||+|++.++
T Consensus 530 --~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs----------iaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 530 --SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS----------VAYVPQQPWIQ 594 (1381)
T ss_pred --CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe----------EEEeccccHhh
Confidence 112234899999999999999999999999999999999999875 999999985 89999998877
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.. ||||||.|+..+. ....++.++++++.. +.--|+.+-.|.||+
T Consensus 595 ng-TvreNILFG~~~d-----------------------~~rY~~Vi~aC~L~~-----------Dle~Lp~GD~TeIGE 639 (1381)
T KOG0054|consen 595 NG-TVRENILFGSPYD-----------------------EERYDKVIKACALKK-----------DLEILPFGDLTEIGE 639 (1381)
T ss_pred CC-cHHHhhhcCcccc-----------------------HHHHHHHHHHccCHh-----------HHhhcCCCCcceecC
Confidence 54 9999999984321 112345556655432 122456778899997
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+++. ||||||||+++|||+..++++++||.|.|++|+.+..+|.+. ++.+- .++|+|+++||- +....+|.|++
T Consensus 640 rGin-LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql--~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 640 RGIN-LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQL--QFLPHADQIIV 714 (1381)
T ss_pred CccC-CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCch--hhhhhCCEEEE
Confidence 6554 999999999999999999999999999999999999999854 54443 478999998863 67889999999
Q ss_pred EcCCeEEEecChhhHH
Q 003389 417 LSEGQIVYQGPRDNVL 432 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (824)
|++|+|+..|+.+++.
T Consensus 715 l~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 715 LKDGKIVESGTYEELL 730 (1381)
T ss_pred ecCCeEecccCHHHHH
Confidence 9999999999999987
No 361
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=1.9e-29 Score=310.80 Aligned_cols=259 Identities=22% Similarity=0.261 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhcc-ccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTD-RVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLH 175 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~-~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 175 (824)
.+.....+||+.+-.+..+|... ..... ...-.|.+.++.|+|+++.+..
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~---~~~~~~pp~~WP~~G~I~f~~~~~RYrp-------------------------- 1150 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPL---EIEESRPPPSWPSKGEIEFEDLSLRYRP-------------------------- 1150 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCC---CCcCCCCCCCCCCCCeEEEEEeEEEeCC--------------------------
Confidence 34567788999998886666111 11111 1222345689999999987532
Q ss_pred cccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEec
Q 003389 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQ 252 (824)
Q Consensus 176 ~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q 252 (824)
+...+|||||++|+|||.+||+|..|||||||.++|-++..|. +|+|.+||.++.+... |+.++.+||
T Consensus 1151 ------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1151 ------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 (1381)
T ss_pred ------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccHHHHHhcCeeeCC
Confidence 1235999999999999999999999999999999999999886 9999999999987643 678999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
|+.+|.. |||.||+=-. ....+++++|+...+.+. ..+ .++...|
T Consensus 1222 dPvLFsG-TvR~NLDPf~--------------------------e~sD~~IW~ALe~~~Lk~------~v~--~~p~~Ld 1266 (1381)
T KOG0054|consen 1222 DPVLFSG-TVRFNLDPFD--------------------------EYSDDEIWEALERCQLKD------VVS--SLPGGLD 1266 (1381)
T ss_pred CCceecC-ccccccCccc--------------------------ccCHHHHHHHHHHhChHH------HHh--hCCcCCC
Confidence 9988865 9999995211 123456666665443322 222 5666688
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.|.+ .+..+|-||||-|++||||+++.+||+|||+|++.|+.|-..|.+.||+--+ ++||+.+-|.- .+.--+|
T Consensus 1267 ~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl--~TVmd~D 1341 (1381)
T KOG0054|consen 1267 SEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRL--NTVMDSD 1341 (1381)
T ss_pred ceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeecc--chhhhcC
Confidence 88874 5567999999999999999999999999999999999999999999999764 78888765533 3555699
Q ss_pred eEEEEcCCeEEEecChhhHHH
Q 003389 413 DIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~ 433 (824)
||+||++|+++++|+|+++++
T Consensus 1342 rVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1342 RVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred eEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999874
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-29 Score=244.40 Aligned_cols=220 Identities=25% Similarity=0.392 Sum_probs=159.3
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc---cC-----CCC-
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE---LN-----EFV- 242 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~---~~-----~~~- 242 (824)
.+.++.+.+ +...-.+||||.+.|||+++|+|.|||||||||+||++++.|+ +|+|.|.-.+ .+ +..
T Consensus 8 ~V~~lsk~Y-g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 8 SVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred eehhhhhhh-CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHHH
Confidence 333443333 3445789999999999999999999999999999999999998 9999996532 22 111
Q ss_pred ---CCceEEEEecCCCCCCCCCHH--HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhh
Q 003389 243 ---PQRTCAYISQHDLHHGEMTVR--ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317 (824)
Q Consensus 243 ---~~~~i~yv~Q~d~~~~~lTV~--E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (824)
.+..-|+|.|++.-=-.|+|- .|+ +-++...+.+ .--++ ...
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~Ni--GERlma~G~R-----------------HYG~i--------------R~~ 130 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNI--GERLMAIGAR-----------------HYGNI--------------RAE 130 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCcc--chhHHhhhhh-----------------hhhhH--------------HHH
Confidence 123479999986432223321 111 0011011100 00000 011
Q ss_pred HHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 318 ~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
...+|+...++.. .+ |+.++..|||++||+.|||-|++.|++.||||||-|||.+-+..++++++.+.++.+..+|
T Consensus 131 a~~WL~~VEI~~~---Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~v 206 (258)
T COG4107 131 AQDWLEEVEIDLD---RI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHhcccCcc---cc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEE
Confidence 3456777766532 12 4567889999999999999999999999999999999999999999999999998898888
Q ss_pred EEEccCchhHHhhcCeEEEEcCCeEEEecChhhHHH
Q 003389 398 VALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~~~ 433 (824)
+++|. ..-+--++||.++|.+|++++.|-.+.+++
T Consensus 207 iVTHD-l~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 207 IVTHD-LAVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred EEech-hHHHHHhhhcceeecCCCEecccccccccc
Confidence 87664 445556799999999999999999888753
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=1.4e-28 Score=316.46 Aligned_cols=197 Identities=23% Similarity=0.326 Sum_probs=153.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+|||++|++|++++|+|||||||||||++|+|.++|. +|+|.++ +.++|++|++.++ ..||
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~----------~~i~yv~Q~~~l~-~~Tv 737 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE----------RSIAYVPQQAWIM-NATV 737 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC----------CeEEEEeCCCccC-CCcH
Confidence 456999999999999999999999999999999999999987 9999863 4699999998766 5799
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.... .+ ..++.++++. .+..++.+ ++..+|.+|+ .+..
T Consensus 738 ~enI~~~~~~~--------------~~---------~~~~~~~~~~---------l~~~l~~l--~~g~~t~i~~-~g~~ 782 (1560)
T PTZ00243 738 RGNILFFDEED--------------AA---------RLADAVRVSQ---------LEADLAQL--GGGLETEIGE-KGVN 782 (1560)
T ss_pred HHHHHcCChhh--------------HH---------HHHHHHHHhh---------hHHHHHHh--hccchHHhcC-CCCC
Confidence 99999852100 00 0111111111 12234444 2233566664 3567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L-~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++++|||||++||+.++..+++.+ .... .++|+|+++|++. ..+.||+|++|++|+
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~--~~~TvIlvTH~~~--~~~~ad~ii~l~~G~ 858 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL--AGKTRVLATHQVH--VVPRADYVVALGDGR 858 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHH--HHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999998754 3322 4789999888764 447899999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++++|+.+++.
T Consensus 859 i~~~G~~~~l~ 869 (1560)
T PTZ00243 859 VEFSGSSADFM 869 (1560)
T ss_pred EEEecCHHHHH
Confidence 99999998875
No 364
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-28 Score=243.62 Aligned_cols=143 Identities=30% Similarity=0.507 Sum_probs=121.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+.+|+++|++|++|++++|+||||||||||+++|+|.+++. +|+|+++|.++..... ++.++|++|
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q-------- 80 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ-------- 80 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEee--------
Confidence 36999999999999999999999999999999999999886 9999999987643200 011222221
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
T Consensus 81 -------------------------------------------------------------------------------- 80 (157)
T cd00267 81 -------------------------------------------------------------------------------- 80 (157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||+||++||++++.+|++++|||||+|||..+...+.+.|+++.+. +.|++++.|+ ..++...||++++|++|
T Consensus 81 --lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~-~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 81 --LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHD-PELAELAADRVIVLKDG 156 (157)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-HHHHHHhCCEEEEEeCc
Confidence 8999999999999999999999999999999999999999999998764 6788887665 45677789999999987
Q ss_pred e
Q 003389 421 Q 421 (824)
Q Consensus 421 ~ 421 (824)
+
T Consensus 157 ~ 157 (157)
T cd00267 157 K 157 (157)
T ss_pred C
Confidence 5
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.7e-28 Score=278.68 Aligned_cols=220 Identities=29% Similarity=0.344 Sum_probs=165.3
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+++++|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+. -.++|++|+....+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~--------~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG--------LRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC--------ceEEEeCCCCCcCCCcc
Confidence 4678999999999999999999999999999999999999987 999987542 35999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCCh---hHHHHHHHH-HHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP---EIDAFMKAV-AVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~---~~~~~~~~~-~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
|.+.+.-+..-. .++..+. +......+++ ..+.+.... ...+-.....+..+|.-||++.. ++.+++
T Consensus 83 v~~~v~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~ 153 (530)
T COG0488 83 VLDYVIEGFGEL-----RELLAEL---EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS 153 (530)
T ss_pred HHHHHHhhhHHH-----HHHHHHH---HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence 999987654211 1111111 1110001111 011111110 11122233467788999999877 777775
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
||||||.||++|++|+.+|++|+|||||+.||..+..-+-+.|++. .| |+|++ +|++.-+-+.|++|+-+
T Consensus 154 -----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV-SHDR~FLd~V~t~I~~l 223 (530)
T COG0488 154 -----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV-SHDRYFLDNVATHILEL 223 (530)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE-eCCHHHHHHHhhheEEe
Confidence 9999999999999999999999999999999999999999999864 35 66665 56787788899999999
Q ss_pred cCCeEE-EecChhhH
Q 003389 418 SEGQIV-YQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv-~~G~~~~~ 431 (824)
+.|++. |.|..+..
T Consensus 224 d~g~l~~y~Gny~~~ 238 (530)
T COG0488 224 DRGKLTPYKGNYSSY 238 (530)
T ss_pred cCCceeEecCCHHHH
Confidence 999875 66765543
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.95 E-value=1.2e-28 Score=236.79 Aligned_cols=134 Identities=35% Similarity=0.547 Sum_probs=117.2
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---CCCceEEEEecCCCCCCCCCHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~---~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
|+|||++|++|++++|+||||||||||+++|+|..++. +|+|.+||.++... ..++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999886 99999999998762 2357899999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||.. ...++++++.+++.+..++.++... ..|
T Consensus 78 ~~~~-----------------------------------------------~~~~~~~l~~l~~~~~~~~~~~~~~-~~L 109 (137)
T PF00005_consen 78 ENES-----------------------------------------------DERIEEVLKKLGLEDLLDRKIGQRA-SSL 109 (137)
T ss_dssp HHHH-----------------------------------------------HHHHHHHHHHTTHGGGTGSBGTSCG-GGS
T ss_pred cccc-----------------------------------------------ccccccccccccccccccccccccc-chh
Confidence 9810 0124567889999888888886543 679
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEIST 371 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTs 371 (824)
||||||||+||++|+.+|++++|||||+
T Consensus 110 S~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 110 SGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp CHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999999996
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=4.6e-28 Score=290.54 Aligned_cols=232 Identities=19% Similarity=0.203 Sum_probs=146.9
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEe
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~ 251 (824)
.+.++...+. ++.+|+|+|++|++|+.++|+|||||||||||++|+|......+.+|+ ++|+.
T Consensus 179 ~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~----------------I~~~~ 241 (718)
T PLN03073 179 HMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ----------------ILHVE 241 (718)
T ss_pred EEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE----------------EEEEe
Confidence 3334443332 346999999999999999999999999999999999974111112344 55555
Q ss_pred cCCCCCCCCCHHHHHHHhhhhc-C-CchhhHHHHHhHHHHHh-----------cCCCCCh---hHHHHHHHHHHh-ccch
Q 003389 252 QHDLHHGEMTVRETLDFSGRCL-G-VGTRYELLAELSRREKQ-----------AGIKPDP---EIDAFMKAVAVA-GQET 314 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~-~-~~~~~~~~~~~~~~e~~-----------~~i~~~~---~~~~~~~~~~~~-~~~~ 314 (824)
|+.. ....|+.+.+.-+..-. . ......+.......+.. .+..++. .+++..+..... ....
T Consensus 242 Q~~~-g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVV-GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCC-CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 5422 23445544432110000 0 00000000000000000 0000000 111111111111 1123
Q ss_pred hhhHHHHHHHcCCC-ccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003389 315 SLVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (824)
Q Consensus 315 ~~~~~~iL~~lgL~-~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~ 393 (824)
..++..+|+.+||. +..++.++ .|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~ 391 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----P 391 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----C
Confidence 44577889999996 44566665 49999999999999999999999999999999999999999999885 5
Q ss_pred cEEEEEEccCchhHHhhcCeEEEEcCCeEE-EecChhhH
Q 003389 394 VTMIVALLQPAPETYDLFDDIILLSEGQIV-YQGPRDNV 431 (824)
Q Consensus 394 ~tvIisi~q~~~e~~~lfD~iilL~~G~iv-~~G~~~~~ 431 (824)
.|+|++.|+ ...+.++||+|++|++|+++ |.|+.++.
T Consensus 392 ~tviivsHd-~~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 392 KTFIVVSHA-REFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECC-HHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 688887654 56778899999999999996 77876654
No 368
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=7.5e-27 Score=244.52 Aligned_cols=191 Identities=21% Similarity=0.248 Sum_probs=130.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHH-HHHhcCcCCCCCCcceEeeCC-------ccc---CCC----CCCceE
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM-LALAGKLGKDLRASGKITYCG-------HEL---NEF----VPQRTC 247 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL-~~LaG~l~~~~~~sG~I~~nG-------~~~---~~~----~~~~~i 247 (824)
+..+|+|||++|++||+++|+||||||||||+ ..+.. .|++.+.. ... ... ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 45699999999999999999999999999996 44421 34332210 000 000 001123
Q ss_pred EEEecCCC--CCCCCCHHH---HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHH
Q 003389 248 AYISQHDL--HHGEMTVRE---TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (824)
Q Consensus 248 ~yv~Q~d~--~~~~lTV~E---~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL 322 (824)
++..|++. ..+..+|.. ...+.. .+...+ + .... .+.|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~~~~~~---------~--------------~~~~-~~~l 121 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLR-------------LLFARV---------G--------------IRER-LGFL 121 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHH-------------HHhhhh---------h--------------HHHH-HHHH
Confidence 34444332 123344432 111100 000000 0 0011 3468
Q ss_pred HHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 003389 323 KILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 323 ~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIis 399 (824)
+.+||.+ ..+..+. .|||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|+++++ .|.|+|++
T Consensus 122 ~~~~l~~~~~~~~~~-----~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~i 195 (226)
T cd03270 122 VDVGLGYLTLSRSAP-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVV 195 (226)
T ss_pred HHCCCCcccccCccC-----cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 8899975 4566554 59999999999999999998 59999999999999999999999999975 48899998
Q ss_pred EccCchhHHhhcCeEEEE------cCCeEEEec
Q 003389 400 LLQPAPETYDLFDDIILL------SEGQIVYQG 426 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL------~~G~iv~~G 426 (824)
.|++. ++ +.||++++| ++|+|+++|
T Consensus 196 tH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 196 EHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 87764 44 689999999 999999986
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=3.5e-26 Score=243.28 Aligned_cols=196 Identities=22% Similarity=0.235 Sum_probs=138.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh-----cCcC-----CC--CC------CcceEeeCCcccCCCCCCc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-----GKLG-----KD--LR------ASGKITYCGHELNEFVPQR 245 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La-----G~l~-----~~--~~------~sG~I~~nG~~~~~~~~~~ 245 (824)
..-|+|||..|+.|++++|.|+||||||||++.+. ..+. |. .. ..--|.++..++... ++.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~-~rs 86 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRT-PRS 86 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCC-CCC
Confidence 34699999999999999999999999999998551 1111 10 00 011244444444211 000
Q ss_pred ------------------------------eEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCC
Q 003389 246 ------------------------------TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295 (824)
Q Consensus 246 ------------------------------~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~ 295 (824)
.+.|..++...+.+|||.|++.|.....
T Consensus 87 ~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------------------- 144 (261)
T cd03271 87 NPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------------------- 144 (261)
T ss_pred cHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh----------------------
Confidence 1223333333345556666665542210
Q ss_pred CChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcC---CcEeEEeCCCC
Q 003389 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEIST 371 (824)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~---p~iLlLDEPTs 371 (824)
.......+|+.+||.. ..+..+ +.||||||||+.||++|+.+ |++++|||||+
T Consensus 145 ------------------~~~~~~~~L~~vgL~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPts 201 (261)
T cd03271 145 ------------------KIARKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTT 201 (261)
T ss_pred ------------------hHHHHHHHHHHcCCchhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 0112455788999976 355544 45999999999999999996 79999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecCh
Q 003389 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPR 428 (824)
Q Consensus 372 GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~ 428 (824)
|||+.....+.+.|+++.+ .|.|+|++.|++. . .+.||+++.| .+|+++++|++
T Consensus 202 gLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~-~-i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 202 GLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLD-V-IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999999999999976 4889999887764 3 4679999999 89999999974
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.94 E-value=3.8e-26 Score=234.27 Aligned_cols=167 Identities=16% Similarity=0.227 Sum_probs=128.1
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC------CCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD------LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~------~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+++++.+++| +++|+||||||||||+++|+|++.+. ....|++.++|++.......+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999997653 123467888888765433347899999987655
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|... . ...++++++. .+..++.++
T Consensus 89 ------~~~~---~---------------------------------------~~~~~~~l~~---~~~~~~~~~----- 112 (197)
T cd03278 89 ------YSII---S---------------------------------------QGDVSEIIEA---PGKKVQRLS----- 112 (197)
T ss_pred ------eeEE---e---------------------------------------hhhHHHHHhC---CCccccchh-----
Confidence 2110 0 0012334444 334455544
Q ss_pred CCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||||||++||++|+ .+|++++|||||+|||+.....+.+.|+++++ +.|+|++.|++. ..+.||+++.+
T Consensus 113 ~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~ 188 (197)
T cd03278 113 LLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGV 188 (197)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEE
Confidence 59999999999999987 57799999999999999999999999999864 578888877653 45789999999
Q ss_pred cC
Q 003389 418 SE 419 (824)
Q Consensus 418 ~~ 419 (824)
..
T Consensus 189 ~~ 190 (197)
T cd03278 189 TM 190 (197)
T ss_pred Ee
Confidence 64
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.7e-26 Score=218.64 Aligned_cols=194 Identities=20% Similarity=0.258 Sum_probs=147.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc--cC--CCC-------CCceEEEEe
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE--LN--EFV-------PQRTCAYIS 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~--~~--~~~-------~~~~i~yv~ 251 (824)
..++|+|||++++.||+++|=|||||||||||++|-|.+.|+ +|+|++.-.. ++ ... .++++|||+
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS 99 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS 99 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHH
Confidence 457999999999999999999999999999999999999998 9999985432 21 111 246899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|--..+|...-.|-++-.+.-+|+.. .........+|..|+++...
T Consensus 100 QFLRviPRV~aLdVvaePll~~gv~~----------------------------------~~a~~~a~~Ll~rLnlperL 145 (235)
T COG4778 100 QFLRVIPRVSALDVVAEPLLARGVPR----------------------------------EVARAKAADLLTRLNLPERL 145 (235)
T ss_pred HHHHhccCcchHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCHHH
Confidence 98777777665555544333333210 01112345688899987544
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
=.. .+...||||+|||.|||.++.+-+||+|||||+.||..++.-++++|++-.. .| +.++-|.|+.+--...+
T Consensus 146 W~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~G-aAlvGIFHDeevre~va 219 (235)
T COG4778 146 WSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RG-AALVGIFHDEEVREAVA 219 (235)
T ss_pred hcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cC-ceEEEeeccHHHHHHHh
Confidence 322 2457999999999999999999999999999999999999999999998643 34 55666666665555689
Q ss_pred CeEEEEcC
Q 003389 412 DDIILLSE 419 (824)
Q Consensus 412 D~iilL~~ 419 (824)
||++-+..
T Consensus 220 dR~~~~~~ 227 (235)
T COG4778 220 DRLLDVSA 227 (235)
T ss_pred hheeeccc
Confidence 99988754
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=5.1e-25 Score=254.25 Aligned_cols=201 Identities=25% Similarity=0.317 Sum_probs=158.6
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
++.+.++.+.+.+++.+++++|+.|.+|+.++|+||||+|||||||+|+|...|. +|+|.+.- .-.+||
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~--------~v~igy 389 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE--------TVKIGY 389 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC--------ceEEEE
Confidence 3455666666655578999999999999999999999999999999999999886 99998753 235899
Q ss_pred EecCC-CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC
Q 003389 250 ISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD 328 (824)
Q Consensus 250 v~Q~d-~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~ 328 (824)
..|+. .+.++.|+.|++.-.. |+.. ...+...|..++++
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~-------------------------~~~~---------------e~~~r~~L~~f~F~ 429 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGF-------------------------PDGD---------------EQEVRAYLGRFGFT 429 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhC-------------------------cccc---------------HHHHHHHHHHcCCC
Confidence 99986 3347779998885321 0000 11244578888886
Q ss_pred c-cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 329 I-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 329 ~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
. ...++|+ .||||||.||.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .+|+|+++ |+..-+
T Consensus 430 ~~~~~~~v~-----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VS-HDr~Fl 499 (530)
T COG0488 430 GEDQEKPVG-----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVS-HDRYFL 499 (530)
T ss_pred hHHHhCchh-----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEe-CCHHHH
Confidence 3 3455665 49999999999999999999999999999999999999999999885 46777765 556678
Q ss_pred HhhcCeEEEEcCCeEEE-ecChhhHH
Q 003389 408 YDLFDDIILLSEGQIVY-QGPRDNVL 432 (824)
Q Consensus 408 ~~lfD~iilL~~G~iv~-~G~~~~~~ 432 (824)
-.+|++++++.+ ++.. .|..++..
T Consensus 500 ~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 500 DRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 889999999998 5544 47765544
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.92 E-value=8.8e-25 Score=246.84 Aligned_cols=205 Identities=24% Similarity=0.395 Sum_probs=163.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC----ceEEEEecC---CCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQH---DLHHG 258 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~----~~i~yv~Q~---d~~~~ 258 (824)
.++||||++++||+++|-|--|||+|-|+++|.|..++. +|+|.+||+++....++ .-++||+.| +.++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 478999999999999999999999999999999977665 99999999988755443 458999987 56889
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccC
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 337 (824)
.++|++|+.++. +....... . +.++ .....++...+.|++. ...++.++
T Consensus 351 ~~sI~~Ni~l~~-l~~~~~~~-~---i~~~------------------------~e~~~~~~~~~~l~Ik~~s~~~~v~- 400 (500)
T COG1129 351 DMSIAENITLAS-LRRFSRRG-L---IDRR------------------------KERALAERYIRRLRIKTPSPEQPIG- 400 (500)
T ss_pred CCcHHHheehHh-hhhhcccc-c---cChH------------------------HHHHHHHHHHHhcCcccCCccchhh-
Confidence 999999998872 21110000 0 0000 0112345567777774 23345555
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.||||.+|+|.||+.|..+|++|+|||||.|.|..+..+|.+.|++++++ |++||+++ ...+|+..+||||+||
T Consensus 401 ----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iS-SElpEll~~~DRIlVm 474 (500)
T COG1129 401 ----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMIS-SELPELLGLSDRILVM 474 (500)
T ss_pred ----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEe-CChHHHHhhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999984 88888764 5678999999999999
Q ss_pred cCCeEEEecChh
Q 003389 418 SEGQIVYQGPRD 429 (824)
Q Consensus 418 ~~G~iv~~G~~~ 429 (824)
++|+++..-+.+
T Consensus 475 ~~Gri~~e~~~~ 486 (500)
T COG1129 475 REGRIVGELDRE 486 (500)
T ss_pred ECCEEEEEeccc
Confidence 999999754443
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=1.5e-24 Score=229.07 Aligned_cols=186 Identities=17% Similarity=0.275 Sum_probs=125.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc----------------CCCCCCcc--------eEeeCCccc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----------------GKDLRASG--------KITYCGHEL 238 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l----------------~~~~~~sG--------~I~~nG~~~ 238 (824)
+..++++++ |++++|+|||||||||||++|++.+ .++ +| +|.+++.+-
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceEEEEEEEEcCCC
Confidence 456888887 7899999999999999999998443 222 34 555555321
Q ss_pred ------CCCCCCceEEEEecCCCCCC-CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhc
Q 003389 239 ------NEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311 (824)
Q Consensus 239 ------~~~~~~~~i~yv~Q~d~~~~-~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~ 311 (824)
.+...++.++|++|+..+++ ..|..|...+...+ +... ....
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~-------------------~~~~----------- 134 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSR-------------------SNPY----------- 134 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCC-------------------CCCc-----------
Confidence 11122466888888766665 35766655543322 2110 0000
Q ss_pred cchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 003389 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQ 387 (824)
Q Consensus 312 ~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~ 387 (824)
.....+.+.+.+++....+..+ +.||||||||++||++|+. +|++++|||||+|||+.++..+.+.|++
T Consensus 135 --~~~~qg~i~~l~~l~~~~~~~~-----~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~ 207 (243)
T cd03272 135 --YIVPQGKINSLTNMKQDEQQEM-----QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE 207 (243)
T ss_pred --EEEEcCchHHhhhccccccccc-----cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0000112334455554444444 4599999999999999973 6899999999999999999999999999
Q ss_pred HHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 388 MVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 388 l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+++ +.++|++ ||. +++.++||++++|.
T Consensus 208 ~~~--~~~ii~~-~h~-~~~~~~~d~i~~l~ 234 (243)
T cd03272 208 LSD--GAQFITT-TFR-PELLEVADKFYGVK 234 (243)
T ss_pred HhC--CCEEEEE-ecC-HHHHhhCCEEEEEE
Confidence 864 5555554 444 57889999999995
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=9.4e-26 Score=218.89 Aligned_cols=197 Identities=27% Similarity=0.410 Sum_probs=164.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCCH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lTV 262 (824)
-|-.+|+.+..||+.-++|||||||||||-.++|+.+. +|+|.++|.++..... .|.-+|..|+..-.+.|.|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 46778999999999999999999999999999999764 9999999999875432 3667999999888888999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
...|...- |+.+. ...++++...++|++...+.+ ..
T Consensus 90 ~~YL~L~q-------------------------P~~~~--------------a~~i~~i~~~L~l~DKL~Rs~-----~q 125 (248)
T COG4138 90 WHYLTLHQ-------------------------PDKTR--------------TELLNDVAGALALDDKLGRST-----NQ 125 (248)
T ss_pred hhhhhhcC-------------------------chHHH--------------HHHHHHHHhhhcccchhhhhh-----hh
Confidence 99886641 11111 123567888999988776555 45
Q ss_pred CCHHHHHHHHHHHHHHc-----C--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 343 ISGGQKKRVTTGEMLVG-----T--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~-----~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
|||||-|||-+|-..+. | .++|+||||.++||...+..+-..|.++++ .|.+||++. |+...+.+.+|+++
T Consensus 126 LSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~-HDLNhTLrhA~~~w 203 (248)
T COG4138 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSS-HDLNHTLRHAHRAW 203 (248)
T ss_pred cCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEec-cchhhHHHHHHHHH
Confidence 99999999999965543 3 369999999999999999999999999997 599999986 55678999999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|+.|++...|.+++++
T Consensus 204 LL~rG~l~~~G~~~eVl 220 (248)
T COG4138 204 LLKRGKLLASGRREEVL 220 (248)
T ss_pred HHhcCeEEeecchhhhc
Confidence 99999999999999885
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=3.8e-25 Score=229.39 Aligned_cols=186 Identities=17% Similarity=0.263 Sum_probs=134.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
++..+|+++++ ++++|+||||||||||+++|.- ++|.+.... ..+.+++++|+...++.+|
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-------------~~G~~~~~~-~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-------------VFGFRASKM-RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-------------HhccCHHHh-hhhhHHHHhcCCCCCCCCc
Confidence 45678999987 8999999999999999999972 233332221 1346889999888888999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
++|.+.+.....+.+ .+. ..++..... ......+++++.++|++..++.++
T Consensus 76 ~~~~~~~~~~~~~~~----~l~-------~~g~~~~~~-------------~~~v~~~~~~~~~~L~~~~~~~~~----- 126 (212)
T cd03274 76 SCSVEVHFQEIIDKP----LLK-------SKGIDLDHN-------------RFLILQGEVEQIAQMPKKSWKNIS----- 126 (212)
T ss_pred eEEEEEEEEeCCCHH----HHH-------HCCcCCCCC-------------ceEEcCCcEEEeeccccccccchh-----
Confidence 999877765432210 000 000000000 000001345678888888887765
Q ss_pred CCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.+|+|||||++||++++. +|+++++||||+|||+.+...+.+.|+++++ +.|+|+++|+ +++.++||++++|
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~--~~~~~~~d~v~~~ 202 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLR--NNMFELADRLVGI 202 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECc--HHHHHhCCEEEEE
Confidence 499999999999999973 5899999999999999999999999999854 5666666666 4788999999999
Q ss_pred cC
Q 003389 418 SE 419 (824)
Q Consensus 418 ~~ 419 (824)
..
T Consensus 203 ~~ 204 (212)
T cd03274 203 YK 204 (212)
T ss_pred Ee
Confidence 64
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.90 E-value=7.8e-24 Score=225.11 Aligned_cols=178 Identities=17% Similarity=0.231 Sum_probs=129.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc-ccCCC-----CCCceEEEEecCC---------CCCCCCC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-ELNEF-----VPQRTCAYISQHD---------LHHGEMT 261 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~-~~~~~-----~~~~~i~yv~Q~d---------~~~~~lT 261 (824)
..+++|+||||||||||+++|++.+.+. ..|++.+.|. ++... .....+.+++|++ ...+.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 4599999999999999999999998763 2467777776 32111 1134789999985 2456789
Q ss_pred HHHHHHHhhhhcC-CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC------------
Q 003389 262 VRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD------------ 328 (824)
Q Consensus 262 V~E~L~f~a~~~~-~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~------------ 328 (824)
|.+++.+...... ...+ ......+..+|+.+||.
T Consensus 103 V~r~I~~~~~~~~~in~~---------------------------------~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~ 149 (251)
T cd03273 103 VTRQIVLGGTNKYLINGH---------------------------------RAQQQRVQDLFQSVQLNVNNPHFLIMQGR 149 (251)
T ss_pred EEEEEEcCCceEEEECCE---------------------------------EeeHHHHHHHHHHcCCCCCCceEEEeehH
Confidence 9888865432110 0000 00011244566666664
Q ss_pred --------ccccccccCccCCCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 329 --------ICADTMVGDEMRRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 329 --------~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
+..++. ++.||||||||++||++|+ .+|+++++||||+|||+.+...+.+.|+++.+ |.++
T Consensus 150 v~~~~~~~~~~~~~-----~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~i 222 (251)
T cd03273 150 ITKVLNMGGVWKES-----LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQF 222 (251)
T ss_pred HHHHHHhHHhhccc-----ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEE
Confidence 223333 4469999999999999998 58899999999999999999999999999853 7788
Q ss_pred EEEEccCchhHHhhcCeEEEEc
Q 003389 397 IVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~ 418 (824)
|++.|. +++.+.||+++-+.
T Consensus 223 i~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 223 IVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred EEEECC--HHHHHhCCEEEEEE
Confidence 888777 57888999998774
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=2.6e-23 Score=214.46 Aligned_cols=167 Identities=22% Similarity=0.247 Sum_probs=122.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHh----cCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC-----CCCCC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALA----GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-----LHHGE 259 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La----G~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d-----~~~~~ 259 (824)
..++.+.+| +++|+|||||||||||++|. |...++ +|.+..+...+.....+..+++++|++ .....
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~ 90 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRS 90 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEE
Confidence 345667788 99999999999999999995 877664 565552222223323346789999987 33445
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||.|++.+... . .++..+ + ..
T Consensus 91 ~~~~~~~~~~~~----------------~----------------------------~~~~~~---------~-----~~ 112 (204)
T cd03240 91 LAILENVIFCHQ----------------G----------------------------ESNWPL---------L-----DM 112 (204)
T ss_pred hhHhhceeeech----------------H----------------------------HHHHHH---------h-----cC
Confidence 678887755310 0 001111 2 23
Q ss_pred CCCCCHHHHHH------HHHHHHHHcCCcEeEEeCCCCCCCHHHHH-HHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 340 RRGISGGQKKR------VTTGEMLVGTANVLYMDEISTGLDSSTTF-QICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 340 ~rgLSGGqrqR------vsIA~aLv~~p~iLlLDEPTsGLDs~t~~-~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
++.||+||||| +++|++++.+|+++++||||++||+.+.. .+.+.|+++.+..+.++|++.|++. ..+.||
T Consensus 113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d 190 (204)
T cd03240 113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAAD 190 (204)
T ss_pred ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCC
Confidence 45699999996 78999999999999999999999999999 9999999997644778999888753 457899
Q ss_pred eEEEEcC
Q 003389 413 DIILLSE 419 (824)
Q Consensus 413 ~iilL~~ 419 (824)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999954
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.89 E-value=7.5e-23 Score=212.37 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=119.2
Q ss_pred cceeeEEe-CCeEEEEEcCCCCcHHHHHHHHhcCc-CCCCCCcceEeeC--CcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 188 KDVSGIVK-PSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRASGKITYC--GHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 188 ~~vs~~I~-~Ge~~aLlGpnGSGKSTLL~~LaG~l-~~~~~~sG~I~~n--G~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++|+|... +|++++|+|||||||||||++|++.+ .+. .+....+ ...+........+++++|++.... ++.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~ 92 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVE 92 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEE
Confidence 56666543 58999999999999999999999654 222 3333322 111111122456899998863211 111
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
... +.. .+.+.+. ..++..++.+..+..+ +.|
T Consensus 93 r~~-------gl~-----------------------~~~~~~~-------------~~l~~g~l~~~l~~~~-----~~l 124 (213)
T cd03279 93 RSR-------GLD-----------------------YDQFTRI-------------VLLPQGEFDRFLARPV-----STL 124 (213)
T ss_pred Eec-------CCC-----------------------HHHHHHh-------------hhhhhcchHHHhcCCc-----ccc
Confidence 110 110 0000000 0122223333334444 459
Q ss_pred CHHHHHHHHHHHHHHc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 344 SGGQKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
|||||||+++|++|+. +|++++|||||+|||+.+...+.+.|+++++ .+.|+|++.|++ ..+...+|+
T Consensus 125 S~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~ 202 (213)
T cd03279 125 SGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQR 202 (213)
T ss_pred CHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcE
Confidence 9999999999999985 5789999999999999999999999999975 378888887765 467788999
Q ss_pred EEEEcCCe
Q 003389 414 IILLSEGQ 421 (824)
Q Consensus 414 iilL~~G~ 421 (824)
++++++|.
T Consensus 203 i~~~~~~~ 210 (213)
T cd03279 203 LEVIKTPG 210 (213)
T ss_pred EEEEecCC
Confidence 99999885
No 380
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=9e-22 Score=240.11 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=92.2
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
...|+.+||.. ..+..+. .||||||||+.||++|+.+| ++++|||||+|||+.+...+++.|+++.+ .|.
T Consensus 811 l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~ 884 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGN 884 (943)
T ss_pred HHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45788999975 4565554 59999999999999999999 99999999999999999999999999975 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|+|++.|++. . ...+|+|+.| .+|++++.|+++++.
T Consensus 885 TVIiitH~~~-~-i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 885 TVVVIEHNLD-V-IKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEEEecCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999877764 3 4679999999 799999999998874
No 381
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.88 E-value=6e-22 Score=227.89 Aligned_cols=181 Identities=26% Similarity=0.388 Sum_probs=138.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
...|++.++.|+||+-+.|.||||||||||+|+|+|+-+-. +|+|.+- ....+-|+||.+.+... |.|
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P--------~~~~~lflpQ~PY~p~G-tLr 473 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP--------ADSALLFLPQRPYLPQG-TLR 473 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC--------CCCceEEecCCCCCCCc-cHH
Confidence 36899999999999999999999999999999999998876 7887653 23457899998776554 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC-ccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD-EMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-~~~rg 342 (824)
|-|.|...... .+|. ...++|...||++..+..=+. +--+-
T Consensus 474 e~l~YP~~~~~--------------------~~d~------------------~l~~vL~~vgL~~L~~rl~~~~~W~~v 515 (604)
T COG4178 474 EALCYPNAAPD--------------------FSDA------------------ELVAVLHKVGLGDLAERLDEEDRWDRV 515 (604)
T ss_pred HHHhCCCCCCC--------------------CChH------------------HHHHHHHHcCcHHHHHHHhccCcHhhh
Confidence 99987531100 1111 234467777777766554322 23456
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||+||||||++||.|+.+|+++||||.|++||..++..+.+.|++-. .+.|+|-+.|++. ...+.++.+-+.
T Consensus 516 LS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred cChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeec
Confidence 99999999999999999999999999999999999999999999854 3677776666554 455566655543
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=3.3e-21 Score=244.06 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=90.8
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHH---cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLV---GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv---~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
+|+.+||.+. .+..+. .|||||||||.||++|+ .+|++|+|||||+|||+.+..++++.|+++++ .|.|+
T Consensus 792 ~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TV 865 (1809)
T PRK00635 792 ALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTV 865 (1809)
T ss_pred HHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 6788999765 566654 59999999999999998 69999999999999999999999999999986 48898
Q ss_pred EEEEccCchhHHhhcCeEEEEc------CCeEEEecChhhHH
Q 003389 397 IVALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVL 432 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~------~G~iv~~G~~~~~~ 432 (824)
|++.|++. .+ +.+|++++|. +|+++..|+++++.
T Consensus 866 IiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 866 VIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 88776654 55 8999999996 79999999998875
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.87 E-value=9e-22 Score=218.43 Aligned_cols=224 Identities=21% Similarity=0.279 Sum_probs=171.4
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc-CCCCC----C
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL-NEFVP----Q 244 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~-~~~~~----~ 244 (824)
+|++.++.-....+...+++|||+|+.||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|+++ ....+ +
T Consensus 257 vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 257 VLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred EEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHh
Confidence 3444444433333456799999999999999999999999999999999999776 79999999997 33332 2
Q ss_pred ceEEEEecCC---CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHH
Q 003389 245 RTCAYISQHD---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321 (824)
Q Consensus 245 ~~i~yv~Q~d---~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i 321 (824)
.-++|||.|. .+.+++|+.||+.+...-..+-.+.. --+.+++ ...+..+
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g----------------~l~~~~i-----------~~~a~~l 386 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGG----------------FLDRRAI-----------RKFAREL 386 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhcccccccccc----------------ccCHHHH-----------HHHHHHH
Confidence 4589999975 46789999999988643211100000 0011111 1234567
Q ss_pred HHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 322 LKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 322 L~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
++.++...+ .+++ .+.||||++||+-+||.|..+|++|+..+||.|||..++..|.+.|.+.++ .|+.|++ +
T Consensus 387 i~~fdVr~~~~~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLL-i 459 (501)
T COG3845 387 IEEFDVRAPSPDAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLL-I 459 (501)
T ss_pred HHHcCccCCCCCcc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEE-E
Confidence 888887633 2333 356999999999999999999999999999999999999999999999986 3655555 4
Q ss_pred ccCchhHHhhcCeEEEEcCCeEEEecChhh
Q 003389 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDN 430 (824)
Q Consensus 401 ~q~~~e~~~lfD~iilL~~G~iv~~G~~~~ 430 (824)
....+|++.+||||.||++|+++...++++
T Consensus 460 S~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 460 SEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred ehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 677889999999999999999998887765
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.87 E-value=1e-22 Score=218.81 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=144.2
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC---ceEEEEecCCCCCCCCCH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---~~i~yv~Q~d~~~~~lTV 262 (824)
=+..||++|+.||++-|+|.||||||||+++|.|+++|+ +|+|.+||++++...+. +..+-|+-|-.+|+.+--
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~ 414 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC
Confidence 467899999999999999999999999999999999998 99999999999764332 223334433222221100
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|+ ++. ...++..|+.+.|.+.-.-.-|+--.-.
T Consensus 415 ~e~-----------------------------~as-----------------~q~i~~~LqrLel~~ktsl~d~~fs~~k 448 (546)
T COG4615 415 PEG-----------------------------KAS-----------------PQLIEKWLQRLELAHKTSLNDGRFSNLK 448 (546)
T ss_pred Ccc-----------------------------CCC-----------------hHHHHHHHHHHHHhhhhcccCCcccccc
Confidence 000 011 1124556666666554332222222335
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||.|||||+++-.||+-+.+|+++||=-+.-||.-+..+.+.+--+-++.|+||+.+.|++ ..|..+||++.+++|++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQL 526 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCce
Confidence 9999999999999999999999999999999999999999888777777899999987765 47899999999999999
Q ss_pred EEecC
Q 003389 423 VYQGP 427 (824)
Q Consensus 423 v~~G~ 427 (824)
++.-+
T Consensus 527 ~e~tg 531 (546)
T COG4615 527 SELTG 531 (546)
T ss_pred eeccc
Confidence 97653
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.86 E-value=7.4e-21 Score=211.93 Aligned_cols=214 Identities=22% Similarity=0.313 Sum_probs=136.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC-C
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM-T 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l-T 261 (824)
++.+++|+++.+.+|+-++|+|||||||||+|++|+|...|. +.+=.++.- .++ ...... +
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~-p~~~d~y~l----------------s~e-~~ps~~~a 148 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPI-PEHIDFYLL----------------SRE-IEPSEKQA 148 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCC-Ccccchhhh----------------ccc-CCCchHHH
Confidence 456999999999999999999999999999999999998874 111111111 111 111111 2
Q ss_pred HHHHHHHhhhhcCCchhhHHH-HHhHHHHHhcCCCCChhH----HHHHHHHHHhccchhhhHHHHHHHcCC-Cccccccc
Q 003389 262 VRETLDFSGRCLGVGTRYELL-AELSRREKQAGIKPDPEI----DAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~-~~~~~~e~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~v 335 (824)
|..-+.+...-+ .+++.. .++... .++.+. +.+.....+.....+..+..+|..+|. ++.++..+
T Consensus 149 v~~v~~~~~~e~---~rle~~~E~l~~~------~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~ 219 (614)
T KOG0927|consen 149 VQAVVMETDHER---KRLEYLAEDLAQA------CDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV 219 (614)
T ss_pred HHHHhhhhHHHH---HHHHHHHHHHHhh------ccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh
Confidence 222222221110 000000 011000 011111 112222222333333345556666665 45566665
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
- ++|||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-+ .++|++ .|+..-+=..|.+|+
T Consensus 220 ~-----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~---~~lVi~-sh~QDfln~vCT~Ii 290 (614)
T KOG0927|consen 220 K-----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR---IILVIV-SHSQDFLNGVCTNII 290 (614)
T ss_pred h-----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC---ceEEEE-ecchhhhhhHhhhhh
Confidence 4 5999999999999999999999999999999999999999999887532 155554 466667778999999
Q ss_pred EEcCCe-EEEecChhhHH
Q 003389 416 LLSEGQ-IVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~-iv~~G~~~~~~ 432 (824)
-|.+++ +.|.|+.+...
T Consensus 291 ~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred eecccceeeecCCHHHHh
Confidence 999999 66778877654
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=2.9e-20 Score=226.64 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=90.0
Q ss_pred HHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHc---CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003389 318 TDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVG---TANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (824)
Q Consensus 318 ~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~---~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~ 393 (824)
...+|+.+||.. ..+..+ +.|||||+|||.||++|+. +|++++|||||+|||+.....+++.|+++.+ .|
T Consensus 808 ~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G 881 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QG 881 (924)
T ss_pred HHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CC
Confidence 346788899975 345444 4599999999999999997 5999999999999999999999999999975 48
Q ss_pred cEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhH
Q 003389 394 VTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNV 431 (824)
Q Consensus 394 ~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~ 431 (824)
.|+|++.|++. .+ +.||+|++| .+|++++.|+++++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89988877664 34 679999999 79999999998765
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=2.3e-20 Score=203.96 Aligned_cols=171 Identities=25% Similarity=0.302 Sum_probs=134.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
=.+.|..||+++++||||-||||+.++|||.++|+ +|+ .. .-.++|=||.-.--.+.||++-|.-.
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC----Cc-------cceEeecceeecCCCCCcHHHHHHHh
Confidence 34566778899999999999999999999999997 776 11 22477777765555678999987543
Q ss_pred hhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 003389 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (824)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrq 349 (824)
.+-. . ..+....++++-|.|+...|..|.+ |||||.|
T Consensus 426 ~~~~-~-------------------------------------~~s~~~~ei~~pl~l~~i~e~~v~~-----LSGGELQ 462 (591)
T COG1245 426 IRSA-F-------------------------------------GSSYFKTEIVKPLNLEDLLERPVDE-----LSGGELQ 462 (591)
T ss_pred hhhh-c-------------------------------------ccchhHHhhcCccchHHHHhccccc-----CCchhHH
Confidence 2211 0 0111234577788898888888765 9999999
Q ss_pred HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 350 RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||+||.+|..++++++||||++-||++.+..+-+.+|+++...++|++++-|. ..-+--+.||++|.+
T Consensus 463 RvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHD-i~~~dyvsDr~ivF~ 530 (591)
T COG1245 463 RVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD-IYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecc-eehhhhhhceEEEEe
Confidence 99999999999999999999999999999999999999999888888887654 333444688888875
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3.3e-20 Score=190.48 Aligned_cols=171 Identities=18% Similarity=0.155 Sum_probs=114.4
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----CCCCceEEEEecCCCCCCCCCH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----FVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++++.+.+| +++|+|||||||||||.+|...+..... ....|..+.+ -.....+.+.+|+....+
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~----~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~---- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS----DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA---- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc----cccccccHHHHhhCCCCeEEEEEEEEcCCccC----
Confidence 46778888887 8899999999999999999754332100 0111221111 111345677777654333
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
| ... ... ...++++|+. .+..++.++ .
T Consensus 83 --~-----~~~----------~~~----------------------------~~~~~~~l~~---~~~~~~~~~-----~ 109 (198)
T cd03276 83 --N-----PLC----------VLS----------------------------QDMARSFLTS---NKAAVRDVK-----T 109 (198)
T ss_pred --C-----cCC----------HHH----------------------------HHHHHHHhcc---ccccCCccc-----c
Confidence 0 000 000 0113334444 455565554 5
Q ss_pred CCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh-CC-cEEEEEEccCchhHHhhcCeEEE
Q 003389 343 ISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI-LD-VTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 343 LSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~-~~-~tvIisi~q~~~e~~~lfD~iil 416 (824)
||+|||||++||++| +.+|++++|||||+|||..+...+.+.|+++++. .+ .|++++. |...++.++ |+|.+
T Consensus 110 lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~t-h~~~~i~~~-d~v~~ 187 (198)
T cd03276 110 LSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITP-QDISGLASS-DDVKV 187 (198)
T ss_pred cChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEEC-Ccccccccc-cceeE
Confidence 999999999999999 5899999999999999999999999999998653 13 4666655 555566664 99999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
|..|+
T Consensus 188 ~~~~~ 192 (198)
T cd03276 188 FRMKD 192 (198)
T ss_pred EEecC
Confidence 98764
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.83 E-value=8.8e-21 Score=211.36 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=144.3
Q ss_pred hhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEe
Q 003389 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~ 251 (824)
.+.++.+.+..+..++++++|-|.+++.++++||||+|||||||++.|.+.|. .|.|.-.-+. .+++..
T Consensus 391 ~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~H~--------~~~~y~ 459 (614)
T KOG0927|consen 391 MVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHSHN--------KLPRYN 459 (614)
T ss_pred EEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccccc--------cchhhh
Confidence 34455566655557999999999999999999999999999999999999997 8887654332 233444
Q ss_pred cC--CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 252 QH--DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 252 Q~--d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
|+ +.+.-+.++-|++.=.. ++ ......+..+|..+||+.
T Consensus 460 Qh~~e~ldl~~s~le~~~~~~-------------------------~~--------------~~~~e~~r~ilgrfgLtg 500 (614)
T KOG0927|consen 460 QHLAEQLDLDKSSLEFMMPKF-------------------------PD--------------EKELEEMRSILGRFGLTG 500 (614)
T ss_pred hhhHhhcCcchhHHHHHHHhc-------------------------cc--------------cchHHHHHHHHHHhCCCc
Confidence 54 22333345555442110 11 011123456899999985
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..++. ..+.||+|||+||..|+.++.+|.+|+|||||+|||..+...+-+.|.++ .++||++. |+.--+-+
T Consensus 501 d~q~~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vS-HDfrlI~q 571 (614)
T KOG0927|consen 501 DAQVV----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVS-HDFRLISQ 571 (614)
T ss_pred ccccc----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeee-chhhHHHH
Confidence 44433 23469999999999999999999999999999999999999999999875 34566654 45556778
Q ss_pred hcCeEEEEcCCeEE-EecChh
Q 003389 410 LFDDIILLSEGQIV-YQGPRD 429 (824)
Q Consensus 410 lfD~iilL~~G~iv-~~G~~~ 429 (824)
.+++|.+..+|.+. +.|...
T Consensus 572 VaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 572 VAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHhHhhccCceeecCccHH
Confidence 88888888887654 556543
No 390
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.83 E-value=9.7e-22 Score=200.34 Aligned_cols=208 Identities=23% Similarity=0.309 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHhhChhHH-HHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHHhhHHHH-HHHh
Q 003389 522 ELFRACFAREWLLMKRNSFVY-IFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAEN-AMTV 599 (824)
Q Consensus 522 ~q~~~~~~R~~~~~~R~~~~~-~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~~~-~~~~ 599 (824)
+|++++++|+++..+||+... ...+++.+++++++|.+|.+++... ++.++.|++++.++..++...... ....
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQ----DGFNRPGLIFGSIIFSFFSSISGSSISFE 76 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccceeeehhhHHhhhhhcccchhhhh
Confidence 489999999999999999877 8999999999999999999887222 222456777777776665544444 5566
Q ss_pred hhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHc
Q 003389 600 LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAV 679 (824)
Q Consensus 600 ~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~ 679 (824)
.++.++.|++....|++++|.+++.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++...++.+++.+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 7889999999999999999999999999999999999999999999999988 78888899999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhh
Q 003389 680 GRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (824)
Q Consensus 680 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf 735 (824)
+++...++.+.+++..+++++||.++|.+.+|+|++|+.|+||++|+.|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999886
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=1.7e-20 Score=186.97 Aligned_cols=219 Identities=18% Similarity=0.247 Sum_probs=161.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCC-CcceEeeCCcccCCCCCC-------ceEEEEecCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR-ASGKITYCGHELNEFVPQ-------RTCAYISQHD 254 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~-~sG~I~~nG~~~~~~~~~-------~~i~yv~Q~d 254 (824)
...++++||+++..||+-+|+|.||||||-..|+|+|..+.+-. ...+..+++.++-...++ +.+++++|++
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 45689999999999999999999999999999999999775322 234455666665444432 4578999987
Q ss_pred CC--CCCCCHHHHHHHhhhhcC-CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 255 LH--HGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 255 ~~--~~~lTV~E~L~f~a~~~~-~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
.- -|.-+|...|.-..-... .+..++-... .+.+.-++|..+|+.+..
T Consensus 99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~W-----------------------------rKrrAIeLLHrVGIKdHk 149 (330)
T COG4170 99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGW-----------------------------RKRRAIELLHRVGIKDHK 149 (330)
T ss_pred hhhcChHHHHHHHHHhhCccccccchHhhhhch-----------------------------hHHHHHHHHHHhccccHH
Confidence 43 343344332211100000 0000100000 112344578899998877
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
|-+- .++.+|.-||-|+|.||.|++..|++|+.||||+.+|+.|+.+|.++|.++.+..+.|+++ +.|+...+-+.|
T Consensus 150 DIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL-~s~Dl~~is~W~ 226 (330)
T COG4170 150 DIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILL-ISHDLQMISQWA 226 (330)
T ss_pred HHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEE-EcccHHHHHHHh
Confidence 7553 3567799999999999999999999999999999999999999999999999876666555 566777888999
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~ 433 (824)
|+|-||.-|+-++.++.+++++
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hheEEEEecccccccchhHHhc
Confidence 9999999999999999999864
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=4.3e-20 Score=196.01 Aligned_cols=76 Identities=18% Similarity=0.346 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHHHcC----CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLVGT----ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~----p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
..||||||||++||++++.+ |++++|||||+|||+.+...+.+.|+++++ .|.++|++.|+ .+..+.||++++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~--~~~~~~~d~i~~ 230 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLK--EEFFSKADALVG 230 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECC--HHHHhhCCeEEE
Confidence 56999999999999999864 899999999999999999999999999975 37888888776 467789999999
Q ss_pred EcC
Q 003389 417 LSE 419 (824)
Q Consensus 417 L~~ 419 (824)
|..
T Consensus 231 ~~~ 233 (247)
T cd03275 231 VYR 233 (247)
T ss_pred EEe
Confidence 964
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=4.1e-19 Score=176.87 Aligned_cols=205 Identities=23% Similarity=0.297 Sum_probs=149.1
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC---CCCCceEEEEecC-
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FVPQRTCAYISQH- 253 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~---~~~~~~i~yv~Q~- 253 (824)
.+++..-+++-|+|+.++.|.-++++|.||||||||||+|+|.--.. .|.|.++|.+.-. ........|+.-+
T Consensus 21 f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW 97 (291)
T KOG2355|consen 21 FKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRSAFHDTSLESSGDLSYLGGEW 97 (291)
T ss_pred EecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcCccccccccccCceeEecccc
Confidence 33444457999999999999999999999999999999999986543 6899999976411 1111223343321
Q ss_pred ---------CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHH
Q 003389 254 ---------DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKI 324 (824)
Q Consensus 254 ---------d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 324 (824)
-.+..++++.+-| |+.. +.+. .+-+.++++
T Consensus 98 ~~~~~~agevplq~D~sae~mi-fgV~---------------------------------------g~dp-~Rre~LI~i 136 (291)
T KOG2355|consen 98 SKTVGIAGEVPLQGDISAEHMI-FGVG---------------------------------------GDDP-ERREKLIDI 136 (291)
T ss_pred cccccccccccccccccHHHHH-hhcc---------------------------------------CCCh-hHhhhhhhh
Confidence 1122344444332 3211 1111 233556777
Q ss_pred cCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 325 LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 325 lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
|.++-.. ..+.+|-|||+||.|+..|+.+-++|+|||.|--||..++.++++.|++-++..|.|||..+|- -
T Consensus 137 LDIdl~W-------RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI-F 208 (291)
T KOG2355|consen 137 LDIDLRW-------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI-F 208 (291)
T ss_pred eeccceE-------EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee-c
Confidence 7765322 1234999999999999999999999999999999999999999999999999999999998763 3
Q ss_pred hhHHhhcCeEEEEcCCeEEEecChhhHHHH
Q 003389 405 PETYDLFDDIILLSEGQIVYQGPRDNVLEF 434 (824)
Q Consensus 405 ~e~~~lfD~iilL~~G~iv~~G~~~~~~~~ 434 (824)
.-......+++.++.|+++-.-+.+.+.++
T Consensus 209 DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 209 DGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred cchhhcchhEEEecCCeeeeccccchhhhh
Confidence 345567889999999999986666666553
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.79 E-value=1.9e-19 Score=185.04 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.+|+|+||++.+++++ .+|+++++|||++|||+.+...+.. .++++.+ .+.+++++.|+ .++.++||++++|.+|
T Consensus 91 ~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~g 166 (200)
T cd03280 91 TFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVENA 166 (200)
T ss_pred hHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEEE
Confidence 4999999999999885 8999999999999999999999974 6777764 47888888775 4678999999999999
Q ss_pred eEEEec
Q 003389 421 QIVYQG 426 (824)
Q Consensus 421 ~iv~~G 426 (824)
++++++
T Consensus 167 ~l~~~~ 172 (200)
T cd03280 167 SMEFDP 172 (200)
T ss_pred EEEEec
Confidence 999874
No 395
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.79 E-value=2.3e-18 Score=193.37 Aligned_cols=195 Identities=17% Similarity=0.257 Sum_probs=137.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+++|+|+.|+.|+-++|.||||||||+||++|+|+-+.. +|+++--...- -+.+-|+||.|.+. ..|.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~---~G~l~k~~~~~-----~~~lfflPQrPYmt-~GTL 517 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST---GGKLTKPTDGG-----PKDLFFLPQRPYMT-LGTL 517 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC---CCeEEecccCC-----CCceEEecCCCCcc-ccch
Confidence 445889999999999999999999999999999999998765 89987644321 14588999987654 3499
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
||-+.|...--.+ ......|.++.++++.+.+ ..+++..| ..|+.+-.+....
T Consensus 518 RdQvIYP~~~~~~---------------~~~~~~d~~i~r~Le~v~L---------~hl~~r~g---gld~~~~~dW~dv 570 (659)
T KOG0060|consen 518 RDQVIYPLKAEDM---------------DSKSASDEDILRILENVQL---------GHLLEREG---GLDQQVDWDWMDV 570 (659)
T ss_pred hheeeccCccccc---------------cccCCCHHHHHHHHHHhhh---------hhHHHHhC---CCCchhhccHHhh
Confidence 9988876321100 0000122333333333222 22333332 2333333334457
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
||+||+||++.||.+..+|++-+|||.||++|...+..+.+.+|+ .|.|.|-+-|.+ .....=|.++-|+.
T Consensus 571 LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 571 LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999999999999999999999999999999998888876 477877766654 45555677777764
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.8e-18 Score=185.80 Aligned_cols=190 Identities=24% Similarity=0.313 Sum_probs=141.1
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
+|.+-++.+.+.+.++++++++|-|.=-.-++|+||||.||||||++|.|.+.|. .|+..-|- +-.||+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~RKnh--------rL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELRKNH--------RLRIGW 654 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhhccc--------eeeeec
Confidence 3455566677878889999999999999999999999999999999999999997 78754331 235888
Q ss_pred EecCC--CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 250 ISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 250 v~Q~d--~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
..|+. .+-.+-|.-|.|.-... . | .......|-.+||
T Consensus 655 FdQh~~E~L~~Eetp~EyLqr~FN---l--------------------p------------------yq~ARK~LG~fGL 693 (807)
T KOG0066|consen 655 FDQHANEALNGEETPVEYLQRKFN---L--------------------P------------------YQEARKQLGTFGL 693 (807)
T ss_pred hhhhhHHhhccccCHHHHHHHhcC---C--------------------C------------------hHHHHHHhhhhhh
Confidence 88873 34445566665532111 0 0 0012335678999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
...++|+- +..||||||-||++|+.-++.|+||||||||++||..+...+.+.|++. +..||++.|..+ .+
T Consensus 694 ~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeR-Li 764 (807)
T KOG0066|consen 694 ASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDER-LI 764 (807)
T ss_pred hhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccc-ee
Confidence 88888863 4569999999999999999999999999999999999999999998875 345666556543 34
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
.+.--.++|+.+-
T Consensus 765 ~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 765 VETDCNLWVVENQ 777 (807)
T ss_pred eecCceEEEEccC
Confidence 4444456666543
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=6.7e-18 Score=175.39 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEEEccCchhHHhhcC--
Q 003389 340 RRGISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD-VTMIVALLQPAPETYDLFD-- 412 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~-~tvIisi~q~~~e~~~lfD-- 412 (824)
+..||||||||+.++.+| +.+|+++++||||+|||+.++..+.+.|+++++..+ .++|+++|+.. +..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCce
Confidence 346999999998887654 589999999999999999999999999999876424 46777766643 4556665
Q ss_pred eEEEEcCCe
Q 003389 413 DIILLSEGQ 421 (824)
Q Consensus 413 ~iilL~~G~ 421 (824)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
No 398
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.3e-18 Score=191.24 Aligned_cols=190 Identities=21% Similarity=0.264 Sum_probs=125.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecC-CCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~-d~~~~~lT 261 (824)
.+.+|++-++++..|+-++|+|+||+||||||++|+. |.|..-. +.+- -.-.+++-. +.+..+ |
T Consensus 92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~--veqE---~~g~~t~~~~~~l~~D-~ 156 (582)
T KOG0062|consen 92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFH--VEQE---VRGDDTEALQSVLESD-T 156 (582)
T ss_pred chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccC--chhh---eeccchHHHhhhhhcc-H
Confidence 5679999999999999999999999999999999985 3332221 1100 001122211 112222 2
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
.++.+... +++-. ++.+...+.+.+|.-+|.+.-... ...+
T Consensus 157 ~~~dfl~~-------------------e~~l~----------------~~~~l~ei~~~~L~glGFt~emq~----~pt~ 197 (582)
T KOG0062|consen 157 ERLDFLAE-------------------EKELL----------------AGLTLEEIYDKILAGLGFTPEMQL----QPTK 197 (582)
T ss_pred HHHHHHHh-------------------hhhhh----------------ccchHHHHHHHHHHhCCCCHHHHh----cccc
Confidence 23222110 10000 000111223447888888643322 2245
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
.+|||-|-|+++||||..+|++|||||||+.||..+..-+.+.|+.+ ..|++++. |++.-.-..|.+||-+++=+
T Consensus 198 slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVS-HDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 198 SLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVS-HDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred ccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEe-ccHHHHHHHHHHHHHHhhhh
Confidence 69999999999999999999999999999999999999999999875 35777654 66767777899999888766
Q ss_pred E-EEecChhhH
Q 003389 422 I-VYQGPRDNV 431 (824)
Q Consensus 422 i-v~~G~~~~~ 431 (824)
+ .|.|+-++.
T Consensus 273 L~~YkGN~~~F 283 (582)
T KOG0062|consen 273 LDYYKGNYSQF 283 (582)
T ss_pred hhhhcCcHHHH
Confidence 5 356765543
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.5e-17 Score=183.11 Aligned_cols=193 Identities=21% Similarity=0.241 Sum_probs=143.1
Q ss_pred cccccCccccc-ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEec
Q 003389 174 LHLVPSKKRSV-RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQ 252 (824)
Q Consensus 174 ~~~~~~~~~~~-~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q 252 (824)
..+.+.+..+. +++.+++..++.-.-.+++|+||+||||++|++.|-+.|. .|-+.+++ +..++|-.|
T Consensus 366 ~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~~--------r~ri~~f~Q 434 (582)
T KOG0062|consen 366 SYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRHP--------RLRIKYFAQ 434 (582)
T ss_pred EeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeecc--------cceecchhH
Confidence 33444444444 6899999999999999999999999999999999988875 78776653 567999999
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccc
Q 003389 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 332 (824)
+..-+-++.|-+- ++..+++ |.. ..+....-+..+||+.-.
T Consensus 435 hhvd~l~~~v~~v-d~~~~~~----------------------pG~---------------~~ee~r~hl~~~Gl~g~l- 475 (582)
T KOG0062|consen 435 HHVDFLDKNVNAV-DFMEKSF----------------------PGK---------------TEEEIRRHLGSFGLSGEL- 475 (582)
T ss_pred hhhhHHHHHhHHH-HHHHHhC----------------------CCC---------------CHHHHHHHHHhcCCCchh-
Confidence 8554444444332 2222211 100 011133457789996422
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
....+.+||||||-||++|.+...+|.+|+|||||+.||..+-..+.+.|+.+ ++.||++. |...-+-.+|+
T Consensus 476 ---a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VS-Hd~~fi~~~c~ 547 (582)
T KOG0062|consen 476 ---ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVS-HDEEFISSLCK 547 (582)
T ss_pred ---hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEE-CcHHHHhhcCc
Confidence 11235679999999999999999999999999999999999999999999987 33455543 56667888999
Q ss_pred eEEEEcCCeEEE
Q 003389 413 DIILLSEGQIVY 424 (824)
Q Consensus 413 ~iilL~~G~iv~ 424 (824)
.+++.++|++.-
T Consensus 548 E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 548 ELWVVEDGKVTP 559 (582)
T ss_pred eeEEEcCCcEEe
Confidence 999999999863
No 400
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=172.62 Aligned_cols=188 Identities=27% Similarity=0.380 Sum_probs=137.2
Q ss_pred ccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CCCcceEeeCCcccCCCCCCceEEEEecC-C
Q 003389 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFVPQRTCAYISQH-D 254 (824)
Q Consensus 181 ~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-----~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~-d 254 (824)
.....+|+|||+.|+||++++|+|+|||||||||++|+|..... -+.+|.|.+--.. ..+.++-+ +
T Consensus 393 ~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~E 464 (593)
T COG2401 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYE 464 (593)
T ss_pred eeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccc
Confidence 34567999999999999999999999999999999999975321 1236766553211 23444433 2
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.-+.+-|+.|.+.-- . .| + ....++|...||.+. .
T Consensus 465 p~f~~~tilehl~s~-----t--------------------GD--~---------------~~AveILnraGlsDA---v 499 (593)
T COG2401 465 PEFGEVTILEHLRSK-----T--------------------GD--L---------------NAAVEILNRAGLSDA---V 499 (593)
T ss_pred cccCchhHHHHHhhc-----c--------------------Cc--h---------------hHHHHHHHhhccchh---h
Confidence 334455666655210 0 01 0 012457888888643 2
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh-h-cC
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-L-FD 412 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~-l-fD 412 (824)
.--...+.||-|||.|+.||.++...|.+++.||--+.||..|+..+.+.|.+++++.+.|.+++.|+| ++.+ + -|
T Consensus 500 lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp--Ev~~AL~PD 577 (593)
T COG2401 500 LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP--EVGNALRPD 577 (593)
T ss_pred hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH--HHHhccCCc
Confidence 222344569999999999999999999999999999999999999999999999998899999998876 3443 4 58
Q ss_pred eEEEEcCCeEE
Q 003389 413 DIILLSEGQIV 423 (824)
Q Consensus 413 ~iilL~~G~iv 423 (824)
+++++.=|.+.
T Consensus 578 ~li~vgYg~v~ 588 (593)
T COG2401 578 TLILVGYGKVP 588 (593)
T ss_pred eeEEeeccccc
Confidence 88888766553
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.70 E-value=1.9e-16 Score=160.03 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 343 ISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||||||||+++|++++ .+|+++++|||++|||+.....+.+.|+++++. +.++|++.|.+ +....+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999998763 68888887764 4567899999997
Q ss_pred C
Q 003389 419 E 419 (824)
Q Consensus 419 ~ 419 (824)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.69 E-value=6.9e-17 Score=177.03 Aligned_cols=95 Identities=27% Similarity=0.367 Sum_probs=81.2
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
..+++.+.|+|++..|.-|.+ |||||-|||+||.+++++++++++|||||-||...+....+.+|++++. +++|
T Consensus 193 ~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~V 266 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYV 266 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeE
Confidence 467899999999999887765 9999999999999999999999999999999999999999999999974 7788
Q ss_pred EEEEccCchhHHh-hcCeEEEEcC
Q 003389 397 IVALLQPAPETYD-LFDDIILLSE 419 (824)
Q Consensus 397 Iisi~q~~~e~~~-lfD~iilL~~ 419 (824)
+++-| +.. +.+ ++|-|-++..
T Consensus 267 iVVEH-DLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 267 IVVEH-DLA-VLDYLSDFVHILYG 288 (591)
T ss_pred EEEec-hHH-HHHHhhheeEEEec
Confidence 88654 443 444 5777777653
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.69 E-value=7.1e-17 Score=179.09 Aligned_cols=172 Identities=20% Similarity=0.334 Sum_probs=121.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+...++|.|+||--++|+||||||||+|.++|+|+-+- |+|+-.. .+...+-|+||.+..- -.|.|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---------y~g~L~~--P~~~~mFYIPQRPYms-~gtlR 562 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---------YNGLLSI--PRPNNIFYIPQRPYMS-GGTLR 562 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---------cCCeeec--CCCcceEeccCCCccC-cCccc
Confidence 4478999999999999999999999999999999999864 4443222 2234599999987655 45778
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc----c
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE----M 339 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~----~ 339 (824)
|.+-|.-.. .++.+ .+ .+|.|.. .+|+.+.|++.+..-.|-+ .
T Consensus 563 DQIIYPdS~----------e~~~~----kg-~~d~dL~------------------~iL~~v~L~~i~qr~~g~da~~dW 609 (728)
T KOG0064|consen 563 DQIIYPDSS----------EQMKR----KG-YTDQDLE------------------AILDIVHLEHILQREGGWDAVRDW 609 (728)
T ss_pred ceeecCCcH----------HHHHh----cC-CCHHHHH------------------HHHHHhhHHHHHHhccChhhhccH
Confidence 877663210 01111 11 1223333 3444444444333333211 1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
-.-||||||||+.+||+...+|+.-+|||.||+.....+..|.+..+. .|.+.+-+.|+|+
T Consensus 610 kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps 670 (728)
T KOG0064|consen 610 KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS 670 (728)
T ss_pred HhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc
Confidence 124999999999999999999999999999999998888888777665 5788888788876
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=6e-17 Score=169.26 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=112.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE-EEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~~lT 261 (824)
...+.+|+++.+.+|++++|.||||+||||||+.++-. .+ ..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-----------~~----------la~~g~~vpa~~~~~~--- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-----------VL----------MAQIGCFVPCDSADIP--- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-----------HH----------HHHhCCCcCcccEEEe---
Confidence 34689999999999999999999999999999999721 00 01112 3433211110
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
..+.+++.+|+++.. .+
T Consensus 72 -------------------------------------------------------~~~~il~~~~l~d~~--------~~ 88 (222)
T cd03285 72 -------------------------------------------------------IVDCILARVGASDSQ--------LK 88 (222)
T ss_pred -------------------------------------------------------ccceeEeeeccccch--------hc
Confidence 012234455554322 24
Q ss_pred CCCHHHHHHHHHHHHH--HcCCcEeEEeCC---CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 342 GISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 342 gLSGGqrqRvsIA~aL--v~~p~iLlLDEP---TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
++|.|+++++.+++++ +.+|+++||||| |++||....... .++.+.+..+.++++++|. .++.++||++..
T Consensus 89 ~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~ 164 (222)
T cd03285 89 GVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPN 164 (222)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCC
Confidence 6999999999999999 899999999999 999999887543 3344443347888888773 678999999999
Q ss_pred EcCCeEEEecC
Q 003389 417 LSEGQIVYQGP 427 (824)
Q Consensus 417 L~~G~iv~~G~ 427 (824)
+.+|++...++
T Consensus 165 i~~g~~~~~~~ 175 (222)
T cd03285 165 VKNLHVTALTD 175 (222)
T ss_pred eEEEEEEEEEe
Confidence 99999987764
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=8.8e-16 Score=165.74 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.|||||+||+++|++++. +|+++++||||+|||+.+...+.+.|+++.+ +.|+|++.|++. +.+.+|++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEE
Confidence 499999999999987654 9999999999999999999999999999864 678888888764 56899999999
Q ss_pred cCCe
Q 003389 418 SEGQ 421 (824)
Q Consensus 418 ~~G~ 421 (824)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8763
No 406
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=4.3e-15 Score=172.70 Aligned_cols=119 Identities=25% Similarity=0.333 Sum_probs=95.8
Q ss_pred HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|..+||.-. ..| +..-.|||||.|||-+|..|.... .+++|||||+||-.....++++.|.++.. .|-|||
T Consensus 805 tL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTVi 879 (935)
T COG0178 805 TLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVI 879 (935)
T ss_pred HHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4666777532 344 334569999999999999998877 89999999999999999999999999997 577888
Q ss_pred EEEccCchhHHhhcCeEEEEc------CCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 398 VALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL~------~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
++-| .. ++...+|.|+=|- .|+||..|+++++.+ +| ..-++.||..+
T Consensus 880 VIEH-NL-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~--------~~-~S~Tg~yLk~~ 932 (935)
T COG0178 880 VIEH-NL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK--------VK-ASYTGKYLKKY 932 (935)
T ss_pred EEec-cc-ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh--------Cc-cchhHHHHHHH
Confidence 7544 33 6888999999983 589999999999974 45 45566676654
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.66 E-value=3.3e-16 Score=155.76 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 343 ISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
||+||+||++++++|.. +|+++++|||++|+|+.....+.+.+.+..+. +.++++++|.+ +..+.+|+++.|.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 99999999999999986 78999999999999999999999999998765 77888877654 4567799999986
Q ss_pred C
Q 003389 419 E 419 (824)
Q Consensus 419 ~ 419 (824)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.66 E-value=3e-16 Score=161.39 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=101.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++|+++.. |++++|+||||||||||||+|+|... +...|.++.. + .+++|.+.+++.+||.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~--------l~~~G~~v~a----~--~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI--------LAQAGAPVCA----S--SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH--------HHHcCCEEec----C--ccCcccceEEEeccch
Confidence 45888887665 79999999999999999999988542 2234554422 1 3667778889999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++.++.... ..+ ...+..+|+.+++
T Consensus 78 d~l~~~~s~~-------------~~e-------------------------~~~~~~iL~~~~~---------------- 103 (199)
T cd03283 78 DDLRDGISYF-------------YAE-------------------------LRRLKEIVEKAKK---------------- 103 (199)
T ss_pred hccccccChH-------------HHH-------------------------HHHHHHHHHhccC----------------
Confidence 9997753110 000 0123445555542
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhh--cCeEEEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDL--FDDIILL 417 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~l--fD~iilL 417 (824)
.+|+++++|||++|||+.....+.. .++++.+ .+.++|+++|++. .+..+ .++|-.+
T Consensus 104 ---------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 ---------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred ---------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 6899999999999999999988764 6788765 4788888877654 33333 4444443
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.65 E-value=4.4e-15 Score=189.05 Aligned_cols=107 Identities=22% Similarity=0.323 Sum_probs=89.9
Q ss_pred HHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 320 YVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 320 ~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~---p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
..|..+||... ..| +....|||||.||+-+|..|..+ +.+++|||||+||++.....+++.|+++.. .|.|+
T Consensus 1681 ~~L~~vGLgYl---~LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tv 1755 (1809)
T PRK00635 1681 QALIDNGLGYL---PLG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSV 1755 (1809)
T ss_pred HHHHHcCCCee---eCC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeE
Confidence 45777888643 234 33456999999999999999876 789999999999999999999999999987 58898
Q ss_pred EEEEccCchhHHhhcCeEEEEc------CCeEEEecChhhHHH
Q 003389 397 IVALLQPAPETYDLFDDIILLS------EGQIVYQGPRDNVLE 433 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~------~G~iv~~G~~~~~~~ 433 (824)
|++-|++ ++...||.|+=|- .|+||+.|+++++.+
T Consensus 1756 ivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 8876654 6788899999994 589999999999864
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.60 E-value=1.8e-15 Score=155.87 Aligned_cols=84 Identities=12% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
++++++ |+..+.+++.+|+++++||||+|||+.....+... ++.+.+ .+.++|+++|. .+..+.+|++..+..|+
T Consensus 92 ~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~--~~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 92 FMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHF--HELADLPEQVPGVKNLH 167 (202)
T ss_pred HHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECCh--HHHHHHhhcCCCeEEEE
Confidence 565555 46666778889999999999999999988887654 555554 47888887664 46778899999999999
Q ss_pred EEEecChhh
Q 003389 422 IVYQGPRDN 430 (824)
Q Consensus 422 iv~~G~~~~ 430 (824)
+...++..+
T Consensus 168 ~~~~~~~~~ 176 (202)
T cd03243 168 MEELITTGG 176 (202)
T ss_pred EEEEecCCe
Confidence 998886543
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.60 E-value=7.9e-15 Score=179.69 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=91.7
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|+.+||.+. .|+.+. .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|+++.+ .|.|||
T Consensus 472 ~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVI 545 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLI 545 (943)
T ss_pred HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 6888999865 677766 49999999999999999987 99999999999999999999999999975 588999
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|++. ++ ..||+|++| .+|++++.|+++++.
T Consensus 546 vVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 546 VVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9877654 44 569999999 999999999998874
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=1.2e-14 Score=177.95 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=89.6
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|..+||... .++.+. .|||||+|||.||++|+.+| ++|+|||||+|||+.....+++.|+++.+ .|.|||
T Consensus 470 ~L~~vgL~~l~l~r~~~-----tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVI 543 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVI 543 (924)
T ss_pred hHhhccccccccCCCcC-----cCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4677888754 465554 59999999999999999986 89999999999999999999999999976 488999
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|++. . ...||+|++| ++|+|++.|+++++.
T Consensus 544 vVeHd~~-~-i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 544 VVEHDEE-T-IRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEECCHH-H-HhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9877643 4 4589999999 899999999998864
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=4.1e-14 Score=152.36 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 340 RRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
..-+|+||||++++|++|+ .+|++++|||||++||+.....+.+.|+++. .++++.|+. +++.++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-----q~ii~~~~~-~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-----QTFVTTTDL-ADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-----CEEEEeCCc-hhccch
Confidence 3448999999999999985 7999999999999999999999999998752 344444443 355566
Q ss_pred c---CeEEEEcCCeE
Q 003389 411 F---DDIILLSEGQI 422 (824)
Q Consensus 411 f---D~iilL~~G~i 422 (824)
| ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999986
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.3e-14 Score=157.72 Aligned_cols=214 Identities=21% Similarity=0.228 Sum_probs=135.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++.++.|.|+.|-.|+-++|+||||-||||||+-|+.+--. .+..=+ +-|+.|+-..- +-|.
T Consensus 276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnID----------------vLlCEQEvvad-~t~A 337 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNID----------------VLLCEQEVVAD-STSA 337 (807)
T ss_pred cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCc----------------eEeeeeeeeec-CcHH
Confidence 45688999999999999999999999999999999976321 001122 34444432211 1133
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHH-----HHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK-----AVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
-+++.-+- ..|..++.+-.+.+.+.. .-+.+..+.++ ..+........+...+|.-||.+.-....+
T Consensus 338 i~tvl~aD-----~kRl~lLeee~~L~~q~e-~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rP-- 409 (807)
T KOG0066|consen 338 IDTVLKAD-----KKRLALLEEEAKLMSQIE-EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERP-- 409 (807)
T ss_pred HHHHHHhh-----HHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCC--
Confidence 33332221 112223322222211110 01111111111 111122223345677899999875443333
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
...+|||-|-||++||||...|.+|.|||||+.||.....-+-+.|+.+. +|.+|+.|. ..-+-..|.+||-|
T Consensus 410 --t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHD-QgFLD~VCtdIIHL 482 (807)
T KOG0066|consen 410 --TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHD-QGFLDSVCTDIIHL 482 (807)
T ss_pred --ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEecc-cchHHHHHHHHhhh
Confidence 23599999999999999999999999999999999999999999999874 477776554 44667789999999
Q ss_pred cCCeEEE-ecChh
Q 003389 418 SEGQIVY-QGPRD 429 (824)
Q Consensus 418 ~~G~iv~-~G~~~ 429 (824)
++-++-| .|...
T Consensus 483 D~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 483 DNQKLHYYRGNYT 495 (807)
T ss_pred hhhhhhhhcchHH
Confidence 9887754 45543
No 415
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=99.50 E-value=3.4e-14 Score=117.97 Aligned_cols=57 Identities=56% Similarity=1.038 Sum_probs=55.3
Q ss_pred ccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCccc
Q 003389 751 QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (824)
Q Consensus 751 ~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~~~~~~~~~~~~~ 807 (824)
+.+.|.++|+++|++++.+|||+++|+|+||+++||+++++||+|++|++++++++|
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~k~~aiis 65 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLGKSQAIIS 65 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcCC
Confidence 578999999999999999999999999999999999999999999999999999986
No 416
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=3.6e-14 Score=146.46 Aligned_cols=136 Identities=17% Similarity=0.173 Sum_probs=93.7
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+.+|+++.+++|++++|+||||+|||||++++++..-- +++ | .|| +...+.+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G------------~~v---pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G------------CFV---PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C------------CCc---chhhcCccC
Confidence 45699999999999999999999999999999999876411 100 1 122 233445566
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|+|.... +..+..+. ..+.
T Consensus 72 ~d~I~~~~-------------------------------------------------------~~~d~~~~-----~~S~ 91 (204)
T cd03282 72 FNRLLSRL-------------------------------------------------------SNDDSMER-----NLST 91 (204)
T ss_pred hhheeEec-------------------------------------------------------CCccccch-----hhhH
Confidence 66663321 11111111 1234
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~ 403 (824)
+|+|++|+ ..+..++.+|++++||||++|+|+.....+. ..++.+.+ .+.++|+++|.+
T Consensus 92 fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~ 151 (204)
T cd03282 92 FASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFR 151 (204)
T ss_pred HHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChH
Confidence 89898865 5556678999999999999999998766654 45666665 488888887643
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=6.4e-14 Score=145.96 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=104.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+.+|+++.+++ ++++|+|||||||||||+++++..-. |+ .|..+.. .+..++++.| +++.+++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeecc--ccceecceee---EeccCCch
Confidence 4589999999988 99999999999999999999875321 11 1211111 1345677755 45677777
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++..+.
T Consensus 84 ~~ls~g~------------------------------------------------------------------------- 90 (216)
T cd03284 84 DDLAGGR------------------------------------------------------------------------- 90 (216)
T ss_pred hhhccCc-------------------------------------------------------------------------
Confidence 7775431
Q ss_pred CH--HHHHHHHHHHHHHcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 344 SG--GQKKRVTTGEMLVGTANVLYMDEI---STGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 344 SG--GqrqRvsIA~aLv~~p~iLlLDEP---TsGLDs~t~-~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|. .|+++++-+...+.+|++++|||| |+++|.... ..+++. +.+..+.++|+++|.+ ++.+++|++.-+
T Consensus 91 s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~---l~~~~~~~vi~~TH~~--~l~~l~~~~~~v 165 (216)
T cd03284 91 STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEY---LHEKIGAKTLFATHYH--ELTELEGKLPRV 165 (216)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHH---HHhccCCcEEEEeCcH--HHHHHhhcCCCe
Confidence 11 122233333333579999999999 888887652 333444 4332377888887763 778889988888
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
.+|++...+..+++
T Consensus 166 ~~~~~~~~~~~~~l 179 (216)
T cd03284 166 KNFHVAVKEKGGGV 179 (216)
T ss_pred EEEEEEEEeeCCeE
Confidence 88998877766554
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.49 E-value=1.7e-13 Score=149.41 Aligned_cols=182 Identities=31% Similarity=0.377 Sum_probs=131.0
Q ss_pred cccccccccceeeEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC
Q 003389 180 KKRSVRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD 254 (824)
Q Consensus 180 ~~~~~~IL~~vs~~I~~G-----e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d 254 (824)
+.+.+.-+.+..+.|+.| |++..+|.||.|||||+++|||+++|+ ..|+| +.=.++|=+|.-
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd--~~~e~-----------p~lnVSykpqki 411 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD--EGGEI-----------PVLNVSYKPQKI 411 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC--ccCcc-----------cccceecccccc
Confidence 334445677888888877 578999999999999999999999987 23333 223466667764
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.--.+-|||+.+.--. + +++| +.+.+.++++-|.+++..|.-
T Consensus 412 spK~~~tvR~ll~~kI----------------r-------------~ay~---------~pqF~~dvmkpL~ie~i~dqe 453 (592)
T KOG0063|consen 412 SPKREGTVRQLLHTKI----------------R-------------DAYM---------HPQFVNDVMKPLQIENIIDQE 453 (592)
T ss_pred CccccchHHHHHHHHh----------------H-------------hhhc---------CHHHHHhhhhhhhHHHHHhHH
Confidence 4445668888763211 0 0111 112345567777777777766
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
|- +|||||.|||++|..|=.++++++.|||++-||+..+...-+.+++..-..++|..++-|.-.-.+ -++||+
T Consensus 454 vq-----~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrv 527 (592)
T KOG0063|consen 454 VQ-----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRV 527 (592)
T ss_pred hh-----cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhccee
Confidence 54 599999999999999999999999999999999999999888888875445677777655433333 368998
Q ss_pred EEEc
Q 003389 415 ILLS 418 (824)
Q Consensus 415 ilL~ 418 (824)
++..
T Consensus 528 ivf~ 531 (592)
T KOG0063|consen 528 IVFE 531 (592)
T ss_pred EEEe
Confidence 8764
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.48 E-value=1e-13 Score=148.69 Aligned_cols=140 Identities=22% Similarity=0.255 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCCCCHHHHHHHhhhhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCL 273 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~ 273 (824)
.-++|+||||||||||+++|+|.++++ +|+|.++|+++..... .+.+++++|++ +...++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 578999999999999999999999987 9999999998753221 13456777754 223344443321
Q ss_pred CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHH
Q 003389 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353 (824)
Q Consensus 274 ~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsI 353 (824)
|.....
T Consensus 182 --------------------------------------------------------------------------k~~~~~ 187 (270)
T TIGR02858 182 --------------------------------------------------------------------------KAEGMM 187 (270)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 000012
Q ss_pred HHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh-H-----------HhhcCeEEEEcCCe
Q 003389 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-T-----------YDLFDDIILLSEGQ 421 (824)
Q Consensus 354 A~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e-~-----------~~lfD~iilL~~G~ 421 (824)
..+...+|+++++|||++ ...+...++.+. .|.++|+++|.+..+ + ...|||+++|++|+
T Consensus 188 ~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 222235899999999974 233444444443 488999999865432 2 26699999999887
Q ss_pred EEEecChhhH
Q 003389 422 IVYQGPRDNV 431 (824)
Q Consensus 422 iv~~G~~~~~ 431 (824)
..|.++++
T Consensus 260 --~~g~~~~i 267 (270)
T TIGR02858 260 --GPGTVEAV 267 (270)
T ss_pred --CCCceeec
Confidence 55665544
No 420
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.47 E-value=6.4e-12 Score=132.23 Aligned_cols=229 Identities=14% Similarity=0.033 Sum_probs=161.0
Q ss_pred HHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhh-----HHHHHHHHHHHHHhhHHHHHHHhhhh-h
Q 003389 530 REWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY-----FGALFFSLLNIMFNGFAENAMTVLRL-P 603 (824)
Q Consensus 530 R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~-----~g~lFf~~~~~~f~~~~~~~~~~~~~-~ 603 (824)
||++...||+..+..-+++-+++.++.+.+|-..-.++. ..++.++ .|.+.++++..+.... .....++. .
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~-~~~g~~y~~fl~~G~~~~~~~~~~~~~~--~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPM-IFGGVDYMTYLVPGIVAMTVFNMSFFSG--ISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccccc-ccCCCcHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhC
Confidence 788889999999999889988888888888754311111 0111222 2334333333222111 11111111 2
Q ss_pred HHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCch
Q 003389 604 IFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTE 683 (824)
Q Consensus 604 vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~ 683 (824)
++.| -...=.+.+.|.+++.+..++..++..+++.++.|++.++++ ..++..++..++...+..+++.++++..++.
T Consensus 78 ~~~~-~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 78 FLKE-ILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 2221 111223578999999999999999999999999998877654 3456566666677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcC
Q 003389 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRG 763 (824)
Q Consensus 684 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g 763 (824)
..++.+.+++..+++.+||.+.|.+.+|+|++|+.+++|++|+.+++-..-. +.. +
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~-~~~-----------------------~ 210 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLA-GVS-----------------------P 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHh-CCC-----------------------c
Confidence 9999999999999999999999999999999999999999999998553221 110 0
Q ss_pred CccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 003389 764 FSTESNWYWIGVGALTGYSFLFNFLFIAA 792 (824)
Q Consensus 764 ~~~~~~~~w~~~~~L~~~~v~f~~l~~la 792 (824)
. ..+|.++++|+.+.+++.+++...
T Consensus 211 ~----~~~~~~~~~l~~~~~~~~~l~~~~ 235 (236)
T TIGR01247 211 T----FPLEQDLLVLTLLAVIFVGIAAVE 235 (236)
T ss_pred c----cchHHHHHHHHHHHHHHHHHHHHh
Confidence 0 124678899999998888876643
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.36 E-value=4.5e-11 Score=133.96 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 340 RRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
...+|+||+|++.+|..|+ ++|++|+||||+++||+..+..+++.|.++ +..++++.|++. .+...
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhh
Confidence 4569999999999999885 799999999999999999999999998764 346677766543 34444
Q ss_pred c--CeEEEEcCCeE
Q 003389 411 F--DDIILLSEGQI 422 (824)
Q Consensus 411 f--D~iilL~~G~i 422 (824)
+ ++++.+.+|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57999999987
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.35 E-value=1.3e-12 Score=132.98 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.+..+.++|+++|++ ++.+++|+---+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 47877776333332 23499999999999999999888775 455666653478888888775 577778753334444
Q ss_pred eEEE
Q 003389 421 QIVY 424 (824)
Q Consensus 421 ~iv~ 424 (824)
++..
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4433
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.31 E-value=1.7e-12 Score=119.62 Aligned_cols=74 Identities=23% Similarity=0.163 Sum_probs=61.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 260 (824)
..+|+++++.+++|++++|+||||||||||+++|. +|+|.++|.++.... ..+..+|++|+ ....
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchh
Confidence 45899999999999999999999999999999985 688999999875433 23556777776 4445
Q ss_pred CHHHHHHHh
Q 003389 261 TVRETLDFS 269 (824)
Q Consensus 261 TV~E~L~f~ 269 (824)
||+|||.+.
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999873
No 424
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.28 E-value=1e-10 Score=120.79 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHHHH
Q 003389 615 PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFIL 694 (824)
Q Consensus 615 ~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~ 694 (824)
+.+.+++++.+..+++.++++++...+.|++.|+++. +++.+++.+++...+..+++.+++++.++.. ..++...+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~--~~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVG--RFLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--HHHHHHHH
Confidence 4567899999999999999999999999999999874 5777888888888999999999999998764 34444455
Q ss_pred HHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcCCccCCcchhHH
Q 003389 695 LIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIG 774 (824)
Q Consensus 695 ~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~ 774 (824)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-.+.+.+. + ...|.+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-~----------------------------~~~~~~ 184 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-D----------------------------GTLWQA 184 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-H----------------------------HHHHHH
Confidence 56667899899999999999999999999999999876554321 1 124778
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003389 775 VGALTGYSFLFNFLFIAALAY 795 (824)
Q Consensus 775 ~~~L~~~~v~f~~l~~laL~~ 795 (824)
+++|++|.+++.++++...+.
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 899999999888888777654
No 425
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.25 E-value=1e-09 Score=115.41 Aligned_cols=216 Identities=12% Similarity=0.112 Sum_probs=139.7
Q ss_pred hhChhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchh-hHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHhhcCc-
Q 003389 536 KRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSR-YFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLF- 613 (824)
Q Consensus 536 ~R~~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~-~~g~lFf~~~~~~f~~~~~~~~~~~~~~vf~ker~~~~- 613 (824)
+||+...++-+.+-+++-++.+.+|-+. ...+ +.+. ..|.+-+..+. .+....+.. +.+||+.+.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~------i~~er~~G~l 68 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHN---RGATFIPVLMALAAIS---TAFTGQAIA------VARDRRYGAL 68 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCc---chhHhhHHHHHHHHHH---HHHHHHHHH------HHHHHHhCHH
Confidence 6899999988888888877777777542 1111 1111 22322222211 111111111 234444443
Q ss_pred -------cchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHccC---ch
Q 003389 614 -------YPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR---TE 683 (824)
Q Consensus 614 -------Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~iaa~~~---~~ 683 (824)
.+++.|.+++.+..++..++..+++. +++++.|++.....+ ..++.+.+....+.+++.+++++++ +.
T Consensus 69 ~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 146 (232)
T TIGR00025 69 KRLGATPLPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQA 146 (232)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 36789999998888888877765554 557788998764433 3344444455555666777777764 44
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcC
Q 003389 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRG 763 (824)
Q Consensus 684 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g 763 (824)
+.+..++.+..++++++||++.|.+.+|.|++|+.+++|++|+.+++-.--..+..
T Consensus 147 ~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~~------------------------ 202 (232)
T TIGR00025 147 EIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSVD------------------------ 202 (232)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCCC------------------------
Confidence 55578888889999999999999999999999999999999999986532111100
Q ss_pred CccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 003389 764 FSTESNWYWIGVGALTGYSFLFNFLFIAALA 794 (824)
Q Consensus 764 ~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~ 794 (824)
....|.++++++++.+++..++....+
T Consensus 203 ----~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 203 ----TFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112466778888888887776665543
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=4.5e-11 Score=124.37 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHh-C-CcEEEEEEccC
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHI-L-DVTMIVALLQP 403 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I-~~~L~~l~~~-~-~~tvIisi~q~ 403 (824)
-|.||++++++++.+|+++++|||++|+|+.....+ ...++++.+. . +.++|+++|.+
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 467999999999999999999999999999765555 4678887653 1 24677776654
No 427
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.23 E-value=2.7e-09 Score=113.98 Aligned_cols=231 Identities=17% Similarity=0.085 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHhhC-hhHHHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHH--HHhhHHHHHHHhh
Q 003389 524 FRACFAREWLLMKRN-SFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNI--MFNGFAENAMTVL 600 (824)
Q Consensus 524 ~~~~~~R~~~~~~R~-~~~~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~--~f~~~~~~~~~~~ 600 (824)
.....+|+++..+|+ +.....-+++-++.-++.|.+|-... + .. ++..|...+.-+++.+ +++++.+..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~-~--~~-~g~~y~~f~~pg~l~~~~~~~~~~~~~---- 78 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMV-G--SV-DGVSYAAFLAAGMVATSAMTASTFETI---- 78 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhc-c--cc-CCCCHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 445669999999999 88888888888888888888864321 1 11 1233433222222211 223321110
Q ss_pred hhhHHHHHhhcCcc--------chHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHH
Q 003389 601 RLPIFYKQRDHLFY--------PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPL 672 (824)
Q Consensus 601 ~~~vf~ker~~~~Y--------~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl 672 (824)
..++.++|..+.+ +++.+.+++.+.+.-..++..++...+. +..|..+. ...+..++++++...+..++
T Consensus 79 -~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~-~~~g~~~~-~~~l~~~~~~ll~~l~~~~l 155 (253)
T TIGR01291 79 -YATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVT-ATLGYIEW-WSLIYILPVIALTGLAFASL 155 (253)
T ss_pred -HHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhchh-hhHHHHHHHHHHHHHHHHHH
Confidence 1345666665553 6788999999988777777666554444 34455443 33444555666677777789
Q ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCccc
Q 003389 673 YRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752 (824)
Q Consensus 673 ~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~ 752 (824)
+.++++++++...+..+..++..+++.+||.+.|.+.+|.|++|+.+++|++|+.+++=.- +.+..+
T Consensus 156 g~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~-~~g~~~------------ 222 (253)
T TIGR01291 156 SMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPV-MLGGPG------------ 222 (253)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHH-HhCCCc------------
Confidence 9999999999999999999999999999999999999999999999999999999985433 211100
Q ss_pred chhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 003389 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALA 794 (824)
Q Consensus 753 ~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~ 794 (824)
...|.++++++++.+++..++....+
T Consensus 223 ----------------~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 223 ----------------TQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01245677788887777766554443
No 428
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.22 E-value=1.8e-11 Score=127.44 Aligned_cols=73 Identities=25% Similarity=0.433 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHH----HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 342 GISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 342 gLSGGqrqRvsIA~aL----v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
.+|||||.+++||-.| ..+.++++||||.++||...+..+.+.|+++.+ +.=+|+++|+ +.+++.+|+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~--~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHN--PEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S---HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc--ccccccccccccc
Confidence 4999999999999554 357899999999999999999999999999874 3456666565 4689999998876
Q ss_pred c
Q 003389 418 S 418 (824)
Q Consensus 418 ~ 418 (824)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 3
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.18 E-value=4.6e-11 Score=145.05 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCc
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~ 404 (824)
..+|+|+++++.|.+.+ .+|+++++|||++|+|+.....+. ..|+.+.+ .+.++|+++|.+.
T Consensus 384 StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 384 STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 35999999999998877 789999999999999999999994 67777765 5888888877654
No 430
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.18 E-value=1.6e-09 Score=115.54 Aligned_cols=207 Identities=14% Similarity=0.087 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccc-cCCCCCc-ccchhh-----HHHHHHHHHHHHHhhHH
Q 003389 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT-EMSVGDM-NGGSRY-----FGALFFSLLNIMFNGFA 593 (824)
Q Consensus 521 ~~q~~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~-~~~~~~~-~~~~~~-----~g~lFf~~~~~~f~~~~ 593 (824)
|..+.++++||++..+||+..+..-+++-+++-++.+.+|-.. +.+.... .+...+ .|.+-++++...+++-
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~- 79 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSS- 79 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhh-
Confidence 3578899999999999999999999999999999999888432 1100000 011112 2333333322222111
Q ss_pred HHHHHhh-hhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHH
Q 003389 594 ENAMTVL-RLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPL 672 (824)
Q Consensus 594 ~~~~~~~-~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl 672 (824)
.....+ ++..+.+=+. .-.+.+.+.+++.+...-..++..++..++.+ ..|.++....++.....+++...+..++
T Consensus 80 -~~~~~~r~~g~~~~l~~-~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~-~~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 80 -LSMVYDREMGSMRVLLT-SPLPRPFLLFCKLLASALISLLQVYAFLAIAA-LVGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred -hHhHHhHhcCHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 011111 1111111111 12477889999999998777777665555443 3377666444554455556666777899
Q ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCc---hhhhHhhhhhCHHHHHHHHHH
Q 003389 673 YRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDI---EPFLRWGYYISPMMYGQTSLL 731 (824)
Q Consensus 673 ~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~i---p~w~~W~~~iSp~~Ya~~al~ 731 (824)
+.++++++++...+..+.++++.+++.+||.+.|.+.+ |.|++|+.++||+.|..|++=
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 99999999999888888889999999999999998766 889999999999999998753
No 431
>PRK14079 recF recombination protein F; Provisional
Probab=99.17 E-value=4.4e-10 Score=125.45 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 342 GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
-+|+||+|++.+|..|+ .+|++++||||+++||......+.+.|.... .++ ++..+ .-+.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~-it~t~----~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAI-VAGTE----APPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEE-EEcCC----CCCCCc
Confidence 48999999999999998 8999999999999999999999998886532 233 33322 345699
Q ss_pred eEEEEcCCeEEEecC
Q 003389 413 DIILLSEGQIVYQGP 427 (824)
Q Consensus 413 ~iilL~~G~iv~~G~ 427 (824)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999998754433
No 432
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.15 E-value=5.3e-10 Score=127.44 Aligned_cols=175 Identities=22% Similarity=0.280 Sum_probs=109.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc---CCC--------CCCceEEEEe
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL---NEF--------VPQRTCAYIS 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~---~~~--------~~~~~i~yv~ 251 (824)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- .++ ..++.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 45689999 999999999999999999999999999999886 89999965433 322 1246788887
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+-|.-. -.|....+.+. + ..++ +..-|-
T Consensus 221 ~~~~~~---~~r~~~~~~a~--------------~------------------------------iAEy-fr~~g~---- 248 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTAT--------------A------------------------------IAEY-FRDQGL---- 248 (438)
T ss_pred CCCCCH---HHHHHHHHHHH--------------H------------------------------HHHH-HHHCCC----
Confidence 643211 01111111110 0 0111 111121
Q ss_pred cccc-cCccCCCCCHHHHHHHHHH-HHHHcCCcEeEEeCC--CCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEEc
Q 003389 332 DTMV-GDEMRRGISGGQKKRVTTG-EMLVGTANVLYMDEI--STGLDSSTTFQICKFLKQMVH-ILDV-----TMIVALL 401 (824)
Q Consensus 332 dt~v-g~~~~rgLSGGqrqRvsIA-~aLv~~p~iLlLDEP--TsGLDs~t~~~I~~~L~~l~~-~~~~-----tvIisi~ 401 (824)
|..+ -|. ++ |.+=| |.+. +.+.|| |+|+|+.....+.+.++++.. ..|. ||++..|
T Consensus 249 ~Vll~~Ds----lt-----r~A~A~rEis-----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~h 314 (438)
T PRK07721 249 NVMLMMDS----VT-----RVAMAQREIG-----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGD 314 (438)
T ss_pred cEEEEEeC----hH-----HHHHHHHHHH-----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECC
Confidence 1111 010 11 11111 1111 122343 679999999999999999874 2353 6666544
Q ss_pred cCchhHHhhcCeEEEEcCCeEEEecChhh
Q 003389 402 QPAPETYDLFDDIILLSEGQIVYQGPRDN 430 (824)
Q Consensus 402 q~~~e~~~lfD~iilL~~G~iv~~G~~~~ 430 (824)
+ .++ .+||++..+.+|+++..+...+
T Consensus 315 d-m~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 315 D-MNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred C-CCc--hhhhhEEEecCEEEEEeccHHH
Confidence 3 333 6799999999999999998754
No 433
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.14 E-value=1.3e-10 Score=120.54 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEIS-----TGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPT-----sGLDs~t~~~I~~~L~~l~~ 390 (824)
-|++++.||++++.+|+++++|||| +|||+.+...+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999875
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=4.5e-10 Score=117.50 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=39.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc-CcCCCCCCcceEe
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG-KLGKDLRASGKIT 232 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG-~l~~~~~~sG~I~ 232 (824)
..+.+|+++.+++|++++|.||||+||||||+++++ .+.+. .|...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~---~G~~v 64 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ---IGSFV 64 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh---CCCEE
Confidence 468999999999999999999999999999999999 44443 66543
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.06 E-value=2.7e-10 Score=124.81 Aligned_cols=96 Identities=25% Similarity=0.235 Sum_probs=77.5
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
..+++++.+.|++..|.-+.. |||||-||.+||.+.+..+++.++|||++-||...+..-...+|.+.. .+.-+
T Consensus 193 ~~~~~~~~~~L~~~~~re~~~-----lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~Yi 266 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDREVEQ-----LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYI 266 (592)
T ss_pred cHHHHHHHHHHhhHHHhhhhh-----cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeE
Confidence 345677888888888777664 999999999999999999999999999999999999999999999986 35666
Q ss_pred EEEEccCchhHHhhcCeEEEEcC
Q 003389 397 IVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~~ 419 (824)
|++-|..+ -.--+.|-+.+|..
T Consensus 267 IVVEHDLs-VLDylSDFiCcLYG 288 (592)
T KOG0063|consen 267 IVVEHDLS-VLDYLSDFICCLYG 288 (592)
T ss_pred EEEEeech-HHHhhhcceeEEec
Confidence 66555443 33335677777763
No 436
>PRK15066 inner membrane transport permease; Provisional
Probab=99.06 E-value=7.9e-08 Score=102.79 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhH-----HHHHHHHHHHHHhhHH
Q 003389 520 KWELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYF-----GALFFSLLNIMFNGFA 593 (824)
Q Consensus 520 ~~~q~~~~~~R~~~~~~R~~~~-~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~-----g~lFf~~~~~~f~~~~ 593 (824)
.|.-++++.+|+++...||+.. ...-+++.++..++.|.++-. +.+. . ++..|. |.+-+..+. +++.
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~-~~~~--~-~~~~y~~fl~pGll~~~~~~---~~~~ 78 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGS-RIGE--M-GGFSYMQFIVPGLIMMSVIT---NSYS 78 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-ccCC--C-CCCcHHHHHHHHHHHHHHHH---HHHH
Confidence 3677889999999999999754 333445555666666665421 1111 0 111222 333222222 2222
Q ss_pred HHHHHhhhhhHHHHH---hhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHH
Q 003389 594 ENAMTVLRLPIFYKQ---RDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670 (824)
Q Consensus 594 ~~~~~~~~~~vf~ke---r~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~ 670 (824)
..+..+.+.. +.|. -...=.+.+.+.+++.+...-..++.+++..++.+...|..+.. ...++..+++...+..
T Consensus 79 ~~~~~i~~~~-~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~ 155 (257)
T PRK15066 79 NVASSFFSAK-FQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFS 155 (257)
T ss_pred HHHHHHHHHH-HhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHH
Confidence 2222222211 1111 11113477888888888776666666655555555555666542 2223333333333333
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCc
Q 003389 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSIN 750 (824)
Q Consensus 671 sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~ 750 (824)
..+.+++++.++...+..+.++++.+++.+||.+.|.+++|.|++|+.++||++|..|++=.. +.+
T Consensus 156 ~~gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~-~~g------------- 221 (257)
T PRK15066 156 LGGLINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYG-FLG------------- 221 (257)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHH-HcC-------------
Confidence 447788888888888888899999999999999999999999999999999999999985422 111
Q ss_pred ccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 003389 751 QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAY 795 (824)
Q Consensus 751 ~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL~~ 795 (824)
.. ....|.++++++++.+++..++....+.
T Consensus 222 -------------~~--~~~~~~~l~~l~~~~~v~~~la~~~~~r 251 (257)
T PRK15066 222 -------------IS--DVPLWLAFAVLLVFIVVLYLLAWYLLER 251 (257)
T ss_pred -------------CC--CccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0113778888888888877777666543
No 437
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.05 E-value=2.1e-10 Score=121.79 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=64.6
Q ss_pred ccccccccCccCCCCCHHH--------HHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHH-HHHHHHHHHHhCCcEEEEE
Q 003389 329 ICADTMVGDEMRRGISGGQ--------KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ-ICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 329 ~~~dt~vg~~~~rgLSGGq--------rqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~-I~~~L~~l~~~~~~tvIis 399 (824)
..+++.+|. ..+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +..+.. .+.|.|+.
T Consensus 117 ~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivl 190 (249)
T cd01128 117 RAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVL 190 (249)
T ss_pred hhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEE
Confidence 344555553 445589999 9999999999999999999 999999755554 54 444443 35677776
Q ss_pred EccCchhHHhhcCeEEEEcCCeE
Q 003389 400 LLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL~~G~i 422 (824)
.|.. .....+|.|.+|..|++
T Consensus 191 s~~l--a~~~~~paI~vl~s~sr 211 (249)
T cd01128 191 DRRL--AERRIFPAIDILKSGTR 211 (249)
T ss_pred chHH--hhCCCCCeEEEcCCCCc
Confidence 6643 35678999999999987
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.05 E-value=1.3e-09 Score=114.77 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEccCch------hHH
Q 003389 343 ISGGQKKRVTTGEMLV----GTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAP------ETY 408 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGL----Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~------e~~ 408 (824)
+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.++++++. +.|++++.++... ...
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIILTANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEEEecccccccccceeEE
Confidence 6777666655554443 369999999999999 778888899999998764 7777776443321 123
Q ss_pred hhcCeEEEEc
Q 003389 409 DLFDDIILLS 418 (824)
Q Consensus 409 ~lfD~iilL~ 418 (824)
.++|-|+.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 4578888886
No 439
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=3.2e-09 Score=119.09 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHHHc---------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 341 RGISGGQKKRVTTGEMLVG---------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~---------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.-+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|++. +..++++.|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 3589999999999999999 99999999999999999999999999763 56788887764
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.00 E-value=4e-09 Score=106.45 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=60.6
Q ss_pred CCCCHHHHH------HHHHHHHHHcCCcEeEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCcEEEEEEccCch------
Q 003389 341 RGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLD---SSTTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (824)
Q Consensus 341 rgLSGGqrq------RvsIA~aLv~~p~iLlLDEPTsGLD---s~t~~~I~~~L~~l~~~~~~tvIisi~q~~~------ 405 (824)
..+|+||+| +.....+...+|+++++|||++.+| ......+.+.++.+.+ .|.|++++.|....
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccC
Confidence 358999998 4444455667999999999999999 7778888888888876 48888887765543
Q ss_pred --hHHhhcCeEEEEc
Q 003389 406 --ETYDLFDDIILLS 418 (824)
Q Consensus 406 --e~~~lfD~iilL~ 418 (824)
.+..+||.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567899999997
No 441
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.00 E-value=7.8e-10 Score=131.02 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHHcC----CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLVGT----ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~----p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.+||||+||++||++++.. |++|++||||+|||+.++..+.+.|+++++ +.+||+++|+|. +...||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHH--HHHhcCeEEE
Confidence 56899999999999999885 699999999999999999999999999974 789999888763 5578999999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
No 442
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.98 E-value=1.4e-09 Score=113.47 Aligned_cols=134 Identities=17% Similarity=0.198 Sum_probs=86.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+-+|+++.+++|++++|.||||+|||||++.+++..-.. ..| .. .+.+. +-++--|.++..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~G------~~----vpa~~-~~i~~~~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QMG------MD----VPAKS-MRLSLVDRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--HcC------Cc----cCccc-cEeccccEEEEecCcc
Confidence 46889999999999999999999999999999998763210 012 11 11111 1111112222222223
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++..+ +
T Consensus 84 d~~~~~-------------------------------------------------------------------------~ 90 (218)
T cd03286 84 DDIMKG-------------------------------------------------------------------------E 90 (218)
T ss_pred cccccC-------------------------------------------------------------------------c
Confidence 332211 1
Q ss_pred CH--HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccC
Q 003389 344 SG--GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 344 SG--GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~ 403 (824)
|- .|-+|++-....+++|+++++|||.+|+|+.....+... ++.+.+..+.++|++.|.+
T Consensus 91 StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 91 STFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 11 234444444444578999999999999999999999888 7777754478888887754
No 443
>PRK10869 recombination and repair protein; Provisional
Probab=98.96 E-value=1.6e-09 Score=127.62 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+.+||||+|||+||++++. +|+++++|||++|||..++..+.+.|+++++ +.++||++|+|. +...||+.++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHhCCEEEE
Confidence 4589999999999999996 5899999999999999999999999999974 688888888764 5689999999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
+.++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.96 E-value=1.2e-09 Score=133.06 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
..+|+|++|++.|++++ ++|++++||||++|+|+.....+.. .+..+.+ .+.++|+++|++. .....+|+..++ +
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~e-l~~~~~~~~~v~-~ 464 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKE-LKALMYNREGVE-N 464 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHH-HHHHHhcCCCeE-E
Confidence 35999999999999988 8999999999999999999988865 5666654 5788888877643 233334444433 4
Q ss_pred CeEEEe
Q 003389 420 GQIVYQ 425 (824)
Q Consensus 420 G~iv~~ 425 (824)
+.+.+.
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 555543
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.95 E-value=2.6e-09 Score=117.35 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=95.4
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCC--ceEEEEecCC-CCCCCCCHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ--RTCAYISQHD-LHHGEMTVR 263 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~--~~i~yv~Q~d-~~~~~lTV~ 263 (824)
.+=+++.+++|+.++|.||+|||||||+++|++.+++. .|.|++.. ..+.... ..+.++.+.. .-....|.
T Consensus 134 ~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~- 207 (308)
T TIGR02788 134 KEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTP- 207 (308)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCH-
Confidence 34467889999999999999999999999999999875 67777753 2232211 2222222210 00000111
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
T Consensus 208 -------------------------------------------------------------------------------- 207 (308)
T TIGR02788 208 -------------------------------------------------------------------------------- 207 (308)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv 423 (824)
.-.+..+|-.+|+++++|||.+ .+..+.++.+.. .+.+++.++|..+ ..+..||+..|..|++.
T Consensus 208 ------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~-g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~ 271 (308)
T TIGR02788 208 ------KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT-GHPGSITTLHAGS--PEEAFEQLALMVKSSQA 271 (308)
T ss_pred ------HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc-CCCeEEEEEeCCC--HHHHHHHHHHHhhcccc
Confidence 1124445667899999999996 344566666653 2335577777665 56669999999999998
Q ss_pred EecChhhHH
Q 003389 424 YQGPRDNVL 432 (824)
Q Consensus 424 ~~G~~~~~~ 432 (824)
..|.+.+..
T Consensus 272 ~~g~~~~~~ 280 (308)
T TIGR02788 272 GLGLDFAYI 280 (308)
T ss_pred ccCCCHHHH
Confidence 888777664
No 446
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.93 E-value=1.9e-09 Score=127.72 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=67.4
Q ss_pred CCCCCHHHHHHHHHHHHHH----------cCCcEeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 340 RRGISGGQKKRVTTGEMLV----------GTANVLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv----------~~p~iLlLDEPT-sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
...||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ + +.++|++.|++ +..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~--~~~ 540 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKD--HDP 540 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECch--hch
Confidence 3579999999999999887 599999999998 689999999999999998 3 67888888874 456
Q ss_pred hhcCeEEEEcC-CeE
Q 003389 409 DLFDDIILLSE-GQI 422 (824)
Q Consensus 409 ~lfD~iilL~~-G~i 422 (824)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 544
No 447
>PRK13695 putative NTPase; Provisional
Probab=98.91 E-value=1.3e-09 Score=109.49 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEI--STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEP--TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.+||+++-+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+ .+.++|+++|.. .+...+|+|..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhccCC
Confidence 3999999999999999999999999995 44444 345566666653 578899888753 45678999999999
Q ss_pred CeEEEec
Q 003389 420 GQIVYQG 426 (824)
Q Consensus 420 G~iv~~G 426 (824)
|++++.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997663
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=5.8e-09 Score=118.25 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=107.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. .+|
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg---------------------~ev 197 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG---------------------REV 197 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc---------------------ccH
Confidence 45688885 999999999999999999999999999998775 67776665432 256
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+|.+..... .-|+... ..| .....
T Consensus 198 ~e~~~~~l~----------------------------------------------------~~gl~~t--vvv--~~tsd 221 (432)
T PRK06793 198 KDFIRKELG----------------------------------------------------EEGMRKS--VVV--VATSD 221 (432)
T ss_pred HHHHHHHhh----------------------------------------------------hccccee--EEE--EECCC
Confidence 665532110 1111110 111 11245
Q ss_pred CCHHHHHHHHHHHHHH-------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 343 ISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv-------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
-|.|+|+|+..+.+.+ +++-++++|+||+..|+. .+|-..+.+.-. .|.+..+..|+ +.+ ++|.-
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l--~~L---~ERag 293 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYM--KKL---LERSG 293 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccc--hhH---HHHhc
Confidence 8999999999998877 889999999999999996 455555555543 36666665443 234 45555
Q ss_pred EEcCCeEEEecCh
Q 003389 416 LLSEGQIVYQGPR 428 (824)
Q Consensus 416 lL~~G~iv~~G~~ 428 (824)
...+|.|...+..
T Consensus 294 ~~~~GSiT~~~tv 306 (432)
T PRK06793 294 KTQKGSITGIYTV 306 (432)
T ss_pred cCCCcceEEEEEE
Confidence 5678888766543
No 449
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=5.4e-09 Score=132.34 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=69.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHH
Q 003389 339 MRRGISGGQKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~ 408 (824)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.. .|++|+|++|. .....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~-~~~~~ 1024 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHV-PEFRE 1024 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc-HHHHH
Confidence 456799999999999999985 7999999999999999999999999999976 57888776655 44678
Q ss_pred hhcCeEEEEcCC
Q 003389 409 DLFDDIILLSEG 420 (824)
Q Consensus 409 ~lfD~iilL~~G 420 (824)
.++|+|.|+..|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999754
No 450
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.87 E-value=6.5e-09 Score=107.36 Aligned_cols=63 Identities=21% Similarity=0.387 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 341 RGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
..+|.|+||.+.+...|...+ .++++|||-++|+|.....+++.|++.++ .+.-+|+++|.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 457999999999998887766 89999999999999999999999988875 4678899888753
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.76 E-value=1.4e-07 Score=116.31 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=62.2
Q ss_pred HHcCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh--------HHhhcCeEEEEcCCeEEEecC
Q 003389 357 LVGTANVLYMDEISTGL-DSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--------TYDLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 357 Lv~~p~iLlLDEPTsGL-Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e--------~~~lfD~iilL~~G~iv~~G~ 427 (824)
+.++|+++++|||+.+| |+..+..+.+.++++.+ .+.++++++|++..- +.+.||.+++|.+|++...|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 36899999999999999 79999999999999876 578888887766432 236899999999999877764
Q ss_pred hhhHHHHHHHcCC
Q 003389 428 RDNVLEFFEHMGF 440 (824)
Q Consensus 428 ~~~~~~~f~~~G~ 440 (824)
.+ +++..|+
T Consensus 728 ~~----~~~~~gl 736 (818)
T PRK13830 728 RE----FYERIGF 736 (818)
T ss_pred HH----HHHHcCC
Confidence 43 4455543
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.75 E-value=6.7e-08 Score=94.16 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCC----------CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEIST----------GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTs----------GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
.+.++.++...+.+...+|+++++||+++ +.|......+.+.+.. +++.+.|+|++.|.+..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence 45566667788888899999999999995 4454545555555444 444689999988876544
No 453
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.5e-07 Score=111.01 Aligned_cols=105 Identities=26% Similarity=0.342 Sum_probs=84.6
Q ss_pred HHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 003389 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 322 L~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIis 399 (824)
|..+||+-.- -++....|||||.||+-+|..|=.. -=+++||||+-||-+.....+++.|+++.+ .|-|+|++
T Consensus 465 L~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVV 539 (935)
T COG0178 465 LVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVV 539 (935)
T ss_pred HHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEE
Confidence 4456665321 1233456999999999999988554 247899999999999999999999999987 58888887
Q ss_pred EccCchhHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 003389 400 LLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~~ 433 (824)
-|. +++...+|+|+=+ ..|+||++|+++++++
T Consensus 540 EHD--edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 540 EHD--EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred ecC--HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 554 5799999999988 3689999999999874
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.72 E-value=5.3e-08 Score=100.21 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=40.3
Q ss_pred HHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 352 sIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+++++|..+|+++++|||. |..+...+++ .+. .|..++.++|.+. ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~----~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT----AAE-TGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH----HHH-cCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4678888899999999996 6665444333 333 4778888888765 346678876664
No 455
>PRK03918 chromosome segregation protein; Provisional
Probab=98.72 E-value=2.7e-08 Score=124.17 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=65.7
Q ss_pred cCCCCCHHHHHH------HHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 339 MRRGISGGQKKR------VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 339 ~~rgLSGGqrqR------vsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.+..|||||+++ +++|++++.+|++++|||||+|||+.....+.+.|+.++. .+.++|+++|++ ++.+.||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCC
Confidence 345699999994 5556678899999999999999999999999999999865 366888877765 4678999
Q ss_pred eEEEEcC
Q 003389 413 DIILLSE 419 (824)
Q Consensus 413 ~iilL~~ 419 (824)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999973
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.71 E-value=1e-08 Score=116.24 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=46.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-eEeeCCcccCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNE 240 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~I~~nG~~~~~ 240 (824)
..+|++||+.+++||+++|+|||||||||||+ +|+..|. +| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECCC
Confidence 35899999999999999999999999999999 7777775 66 89999998764
No 457
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.69 E-value=2.3e-06 Score=90.90 Aligned_cols=152 Identities=16% Similarity=0.207 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHHHHH-HccCchHHHHHHHHHHHH
Q 003389 617 WAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVA-AVGRTEVISNTLGTFILL 695 (824)
Q Consensus 617 ~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~~ia-a~~~~~~~A~~~~~~~~~ 695 (824)
..+++++.+...-...+...+...++.+..| ......++....++.+...+..+++.+++ ...++...++.++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5677888888877777777777788888888 33445556666666666677777777555 366778889999999999
Q ss_pred HHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhhcCCcccCCCCCCCCcccchhHHHHhhcCCccCCcchhHHH
Q 003389 696 IMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGV 775 (824)
Q Consensus 696 ~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf~~~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~ 775 (824)
++..+||.+.|.+.+|.|++|+.++.|..|+.+++-..-..+..+ ...|..+
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 261 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN----------------------------DGIWISL 261 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch----------------------------hhHHHHH
Confidence 999999999999999999999999999999999976544322111 0157788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 003389 776 GALTGYSFLFNFLFIAALAYLN 797 (824)
Q Consensus 776 ~~L~~~~v~f~~l~~laL~~~~ 797 (824)
++|+++.+++.+++.+.++...
T Consensus 262 ~~l~~~~~v~~~~~~~~~~~~~ 283 (286)
T COG0842 262 LILLLFAVVFLLLGLLLLRRRR 283 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999998888877543
No 458
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=9.5e-08 Score=95.28 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
...-|-||-=---+.+.+.+ .-+++||||-++|.+.-+..++..|+++++ .|.-+||.+|.|.
T Consensus 127 Lh~~SHGEsf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChh
Confidence 44578888655555555544 479999999999999999999999999997 4788888888875
No 459
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=7.7e-08 Score=124.42 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=61.8
Q ss_pred cccccCccCCCCCHHHHH------HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEEEc
Q 003389 332 DTMVGDEMRRGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALL 401 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrq------RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~----~~~~tvIisi~ 401 (824)
|+.++. ...||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.++|+++|
T Consensus 1191 ~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 565542 3469999999 99999999999999999999999999999999999988742 23677877665
Q ss_pred cCchhHHhhc
Q 003389 402 QPAPETYDLF 411 (824)
Q Consensus 402 q~~~e~~~lf 411 (824)
. ...+..+|
T Consensus 1269 d-~~~~~~~~ 1277 (1311)
T TIGR00606 1269 D-EDFVELLG 1277 (1311)
T ss_pred C-HHHHHHHh
Confidence 4 44555554
No 460
>PRK01156 chromosome segregation protein; Provisional
Probab=98.65 E-value=7.6e-08 Score=120.41 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=64.7
Q ss_pred cCCCCCHHHHHHHHH------HHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEEEccCchhHHhh
Q 003389 339 MRRGISGGQKKRVTT------GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD--VTMIVALLQPAPETYDL 410 (824)
Q Consensus 339 ~~rgLSGGqrqRvsI------A~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~--~tvIisi~q~~~e~~~l 410 (824)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+...+..+ .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356799999999975 5899999999999999999999999999999986544332 36777777653 5578
Q ss_pred cCeEEEEc
Q 003389 411 FDDIILLS 418 (824)
Q Consensus 411 fD~iilL~ 418 (824)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.63 E-value=4.1e-07 Score=95.90 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHc--CCcEeEEeCCCCC---CCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch------hHHhhc
Q 003389 343 ISGGQKKRVTTGEMLVG--TANVLYMDEISTG---LDSSTTFQICKFLKQMVHILDVTMIVALLQPAP------ETYDLF 411 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~--~p~iLlLDEPTsG---LDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~------e~~~lf 411 (824)
.|.++++.+.....++. +|+++++||||+. +|.....++++.++.+++ .+.|++++.|++.. .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 56788899999988887 9999999999965 445555555555666665 47888888776542 145667
Q ss_pred CeEEEEcC
Q 003389 412 DDIILLSE 419 (824)
Q Consensus 412 D~iilL~~ 419 (824)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 87777763
No 462
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.62 E-value=6.4e-08 Score=122.30 Aligned_cols=80 Identities=21% Similarity=0.082 Sum_probs=64.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHc--------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 338 EMRRGISGGQKKRVTTGEMLVG--------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~--------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|+.+.+ .|++|+|++|.+ ...-+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~-~l~~~ 1022 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVE-AMKER 1022 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHH-HHHHh
Confidence 3456799999999999999995 8999999999999999999999999999976 588988877632 22233
Q ss_pred hcCeEEEEcC
Q 003389 410 LFDDIILLSE 419 (824)
Q Consensus 410 lfD~iilL~~ 419 (824)
+-.+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 4445555543
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.58 E-value=9.5e-08 Score=97.31 Aligned_cols=84 Identities=23% Similarity=0.180 Sum_probs=63.0
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC--CCCCCCCHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD--LHHGEMTVR 263 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d--~~~~~lTV~ 263 (824)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++ .|.|.+.+..-........++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 455566778999999999999999999999999999876 899999774322222234566666544 346678999
Q ss_pred HHHHHhhhh
Q 003389 264 ETLDFSGRC 272 (824)
Q Consensus 264 E~L~f~a~~ 272 (824)
+.+..+.+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 998877653
No 464
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.57 E-value=3.2e-07 Score=105.68 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=56.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.++++.+..++.|++++++||||+||||++..|++.+... .|. +.+++|.+|. ...++.|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G~--------------~kV~LI~~Dt---~RigA~E 303 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HGA--------------SKVALLTTDS---YRIGGHE 303 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cCC--------------CeEEEEeCCc---cchhHHH
Confidence 3566777788899999999999999999999999987543 332 2578888864 4468999
Q ss_pred HHHHhhhhcCC
Q 003389 265 TLDFSGRCLGV 275 (824)
Q Consensus 265 ~L~f~a~~~~~ 275 (824)
+|.+.++..++
T Consensus 304 QLr~~AeilGV 314 (484)
T PRK06995 304 QLRIYGKILGV 314 (484)
T ss_pred HHHHHHHHhCC
Confidence 99998776654
No 465
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=6.2e-08 Score=110.06 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=74.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------CCceEEEEec
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQ 252 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~i~yv~Q 252 (824)
.+..+|+++ +.|.+|+.++|+|+||+|||||+++|+|..+++..+-|.|-.+|.++.++. .+..+++++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 356799999 999999999999999999999999999998876333466767776654321 2346899999
Q ss_pred CCCCCCCCCHHHHHHHhhhhc
Q 003389 253 HDLHHGEMTVRETLDFSGRCL 273 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~a~~~ 273 (824)
++..+..+++.+++.+.+...
T Consensus 220 d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHh
Confidence 999999999999998877543
No 466
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.52 E-value=5.1e-07 Score=89.09 Aligned_cols=115 Identities=7% Similarity=-0.105 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhH--HHHHHHHHHHHHHHhHHHHHHHHHHccCchHHHHHHHHH
Q 003389 615 PSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS--RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692 (824)
Q Consensus 615 ~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~--~Ff~~~l~l~l~~~~~~sl~~~iaa~~~~~~~A~~~~~~ 692 (824)
+.+.|.+++.+...-..+++.++..++.++ .|++.... .++.++++..+.......++..++...++... .....+
T Consensus 30 ~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~~~~~~~~-~~~~~~ 107 (152)
T TIGR01248 30 HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMALRKEGRFA-MEALEL 107 (152)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 678999999999999999988877777754 48887632 22233333344444444555555554555443 334577
Q ss_pred HHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHH
Q 003389 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731 (824)
Q Consensus 693 ~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~ 731 (824)
+.+++..+||.+.|.+++|+|++|+-+++|++|+.+++=
T Consensus 108 v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 108 AQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 778888889999999999999999999999999999863
No 467
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.51 E-value=1.3e-07 Score=121.04 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=64.9
Q ss_pred cCCCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 339 MRRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.+..||||||+|++||++++ .+|+++||||||+|||+.+...+.+.|+.+++ +.++|+++|++. ....||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 45579999999999999984 68899999999999999999999999999875 467888777754 45789999
Q ss_pred EEEc
Q 003389 415 ILLS 418 (824)
Q Consensus 415 ilL~ 418 (824)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8664
No 468
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.45 E-value=2.6e-07 Score=118.39 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHHc----CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 340 RRGISGGQKKRVTTGEMLVG----TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~----~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+..||||||++++||.+++. +|++++||||++|||+.....+.+.|+++++ +..+|+++|++ .++..||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhcceeE
Confidence 46799999999999999984 7899999999999999999999999999864 46677777776 4778999999
Q ss_pred EEcC
Q 003389 416 LLSE 419 (824)
Q Consensus 416 lL~~ 419 (824)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.44 E-value=1e-06 Score=93.30 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHcCCcEeEEeCCCC------CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 357 LVGTANVLYMDEIST------GLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 357 Lv~~p~iLlLDEPTs------GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
...+|+++++| |++ .+|+.....+++.|+++++..+++++++.|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 765 47999999999999999987788888865543
No 470
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.44 E-value=6.2e-06 Score=77.08 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHH-----HHHHHHHhCCcEEEEEEc
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-----FLKQMVHILDVTMIVALL 401 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~-----~L~~l~~~~~~tvIisi~ 401 (824)
..+++..+..+..+-..+|.++++||+..-.+......... .........+..+|++.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 67777778777777777789999999999999998887764 223333334667777665
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.33 E-value=3.9e-06 Score=93.76 Aligned_cols=42 Identities=29% Similarity=0.555 Sum_probs=32.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
.+++.+++|.||+||||||+|++|.+.+.+. ..|.|..-+.+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp 160 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDP 160 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCC
Confidence 4678899999999999999999999876532 25666554443
No 472
>PRK02224 chromosome segregation protein; Provisional
Probab=98.32 E-value=1.1e-06 Score=109.76 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCCHHHHH------HHHHHHHHHcC------CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc-EEEEEEccCchh
Q 003389 340 RRGISGGQKK------RVTTGEMLVGT------ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV-TMIVALLQPAPE 406 (824)
Q Consensus 340 ~rgLSGGqrq------RvsIA~aLv~~------p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~-tvIisi~q~~~e 406 (824)
+..||||||+ |++++++++.+ +++++|||||++||+.....+++.|+++.. .+. ++|+++|++ +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~--~ 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDD--E 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECCh--H
Confidence 4579999999 89999888853 367999999999999999999999999875 344 677777765 3
Q ss_pred HHhhcCeEEEEcC
Q 003389 407 TYDLFDDIILLSE 419 (824)
Q Consensus 407 ~~~lfD~iilL~~ 419 (824)
....||+++.|..
T Consensus 856 ~~~~ad~~~~~~~ 868 (880)
T PRK02224 856 LVGAADDLVRVEK 868 (880)
T ss_pred HHHhcCeeEEeec
Confidence 4578999999964
No 473
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.29 E-value=1.5e-05 Score=98.96 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=51.0
Q ss_pred HHHHHHcCCcEeEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh--hcCeEEEEcCCeEE
Q 003389 353 TGEMLVGTANVLYMDEISTGL-DSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD--LFDDIILLSEGQIV 423 (824)
Q Consensus 353 IA~aLv~~p~iLlLDEPTsGL-Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~--lfD~iilL~~G~iv 423 (824)
|++++.++|+++++|||+.+| |+..+..+.+.++.+.+ .|.++++++|++. ++.+ .++.|+-..+.+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567888999999999999999 79999999999999876 4778887766554 3433 33444444444444
No 474
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.27 E-value=1.1e-05 Score=92.57 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=43.7
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~ 236 (824)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.+...|.
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~ 199 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGE 199 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEee
Confidence 456799999 999999999999999999999999999998776 565555443
No 475
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=7.5e-07 Score=101.45 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=58.2
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC---cccCCCC-------CCceEE
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELNEFV-------PQRTCA 248 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG---~~~~~~~-------~~~~i~ 248 (824)
....+..+++.++ .|.+|+.++|+|||||||||||++|+|+.+++ .|.|.+.| +++.++. .++.++
T Consensus 148 ~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~rtI~ 223 (450)
T PRK06002 148 GLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLKKAVA 223 (450)
T ss_pred EcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhCCeEE
Confidence 3344567888886 89999999999999999999999999998886 78888864 5543321 236799
Q ss_pred EEecCCC
Q 003389 249 YISQHDL 255 (824)
Q Consensus 249 yv~Q~d~ 255 (824)
+|+|.|.
T Consensus 224 vV~qsd~ 230 (450)
T PRK06002 224 VVATSDE 230 (450)
T ss_pred EEEcCCC
Confidence 9999764
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.26 E-value=4.3e-07 Score=105.90 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=55.9
Q ss_pred HHcCCCccccccccCccCCCCCHHHHHHHHHH--HHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 323 KILGLDICADTMVGDEMRRGISGGQKKRVTTG--EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 323 ~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA--~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
+.+++++..+.... .+|+|++|||.|+ .++...|+.. ...+.++.+.++.+.+ .|+|++++.
T Consensus 101 ~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~TvLLts 164 (484)
T TIGR02655 101 GGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTTVMTT 164 (484)
T ss_pred ccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEEEEEe
Confidence 34455544454443 4999999999999 5565554333 4677788888888865 589999998
Q ss_pred ccCchh-------H-HhhcCeEEEEc
Q 003389 401 LQPAPE-------T-YDLFDDIILLS 418 (824)
Q Consensus 401 ~q~~~e-------~-~~lfD~iilL~ 418 (824)
|+.... + ..++|.|+.|+
T Consensus 165 h~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 165 ERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred cCcccccccccCCceeEeeeeEEEEE
Confidence 865321 2 45789999997
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.16 E-value=2.4e-06 Score=87.55 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|.||||||||||.++|++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 478
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.15 E-value=0.00015 Score=77.00 Aligned_cols=193 Identities=10% Similarity=0.079 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHhhhccc-cCCCCCcccchhhHHHHHHHHHHHHHhhHHHHHHHhhhhh
Q 003389 525 RACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT-EMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLP 603 (824)
Q Consensus 525 ~~~~~R~~~~~~R~~~~~~~r~~~~i~~ali~gt~f~~~-~~~~~~~~~~~~~~g~lFf~~~~~~f~~~~~~~~~~~~~~ 603 (824)
++..+||++...|.|..|++-.+-.++.|+.. ..|... +....+..+.+.+.+...+ +....... + --.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~--l-----~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPA--I-----TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHH--H-----HHH
Confidence 56789999999999999988777777766442 222110 1011111122222222111 11111111 1 124
Q ss_pred HHHHHhhcCcc--------chHHHHHHHHHHHHHHHHHhHh---hhheeeecccC--CCchhHHHHHHHHHHHHHHHhHH
Q 003389 604 IFYKQRDHLFY--------PSWAFALPIWLLRIPISILDST---IWVALTYYTIG--YDPAASRFFKQFLAFFSIHNMSL 670 (824)
Q Consensus 604 vf~ker~~~~Y--------~~~ay~la~~l~~iP~~~~~~~---if~~i~Y~~~G--l~~~~~~Ff~~~l~l~l~~~~~~ 670 (824)
.+-+||+.+.. +.+.+.++|++.-.-+.++..+ ++....++... -..+.+.++..++.+++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 67788888764 4678899998887654433222 12211111111 12356667666777777777888
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHH
Q 003389 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQT 728 (824)
Q Consensus 671 sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~ 728 (824)
+++.++++++++..+|..++.....++.+.-+++-+. ..|+|..|+.|+||..|-.+
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASL-LWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHcCHHHHHHH
Confidence 9999999999999888766644433322211222111 24889999999999776544
No 479
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.11 E-value=1.4e-06 Score=88.02 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC--CceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~--~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
+|++++|+|+||||||||+++|+|++.+ +.++|.++..... +...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999998765 4777776543211 12345666665555666777776654
No 480
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.09 E-value=1.1e-05 Score=84.54 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=28.5
Q ss_pred ccccce-eeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 185 RILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 185 ~IL~~v-s~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
+-|+++ .+=+++|++++|.||||+|||||...++
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 346663 5779999999999999999999998655
No 481
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.98 E-value=2.1e-05 Score=97.50 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCcEeEEeCC---CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 341 RGISGGQKKRVTTGEMLVG--TANVLYMDEI---STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~--~p~iLlLDEP---TsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+|.|-=+.....++.+|-. +++++++||| |+.+|... .....++.+.+..+.++++++|. .++.+++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 4577766666677776654 8999999999 88888544 23345555554435778888776 466677765
No 482
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.97 E-value=8.3e-06 Score=67.87 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=29.9
Q ss_pred ccceeeEEeC-CeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 187 LKDVSGIVKP-SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 187 L~~vs~~I~~-Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++.++.+.+ |.+++|.|||||||||||+++.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456777776 569999999999999999999766544
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=97.94 E-value=6.7e-06 Score=92.23 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=59.6
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
-++.+.-.+++|++++|+|+||+|||||+++|+|...+. +|+|.+++.........+.+.+++|+..++.+ ....+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~ 259 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRE 259 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhh
Confidence 355566677899999999999999999999999998876 99999987543333335678999998766643 34444
Q ss_pred HHH
Q 003389 266 LDF 268 (824)
Q Consensus 266 L~f 268 (824)
+.+
T Consensus 260 ~~l 262 (356)
T PRK01889 260 LQL 262 (356)
T ss_pred hcc
Confidence 433
No 484
>PRK08149 ATP synthase SpaL; Validated
Probab=97.89 E-value=7.9e-06 Score=92.98 Aligned_cols=71 Identities=25% Similarity=0.357 Sum_probs=57.3
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQH 253 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~ 253 (824)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|++..+++..+-|.|-.+|+++.++. ..+.+++|...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 345799999 999999999999999999999999999998877444599999999875431 12456666654
No 485
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.88 E-value=0.00023 Score=80.28 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=70.4
Q ss_pred CCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCC-----CHHHHHHH----------HHHHHHHHH
Q 003389 326 GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL-----DSSTTFQI----------CKFLKQMVH 390 (824)
Q Consensus 326 gL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGL-----Ds~t~~~I----------~~~L~~l~~ 390 (824)
+|+...||.- --...=||-.-|=..|.+||=..+++||+||=||+- |...+.-+ ++.++++.+
T Consensus 308 ~LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~ 385 (448)
T PF09818_consen 308 NLPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYE 385 (448)
T ss_pred hCCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHH
Confidence 4555555541 122347999999999999999999999999999874 44444433 556677777
Q ss_pred hCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 391 ILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 391 ~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
+.|.++|++. --+...++.+|+|++|++=+.
T Consensus 386 ~~GvStIlV~-Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 386 KLGVSTILVV-GGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HcCceEEEEe-ccchhhHhhCCEEEEecCccc
Confidence 7788888876 556788999999999998553
No 486
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.85 E-value=3e-05 Score=89.63 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=44.4
Q ss_pred cCCcEeEEeCCCCCC----C-----HHHHHHHHHHHHHHHHhCCcEEEEEEccCch-------hHHhhcCeEEEEcCCe
Q 003389 359 GTANVLYMDEISTGL----D-----SSTTFQICKFLKQMVHILDVTMIVALLQPAP-------ETYDLFDDIILLSEGQ 421 (824)
Q Consensus 359 ~~p~iLlLDEPTsGL----D-----s~t~~~I~~~L~~l~~~~~~tvIisi~q~~~-------e~~~lfD~iilL~~G~ 421 (824)
.+|+++++|..++=. + .....+++..|.++++..+.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999887521 1 1234566677888888889999998664322 1456899999998654
No 487
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.84 E-value=0.00073 Score=83.86 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHcCCcEeEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 356 MLVGTANVLYMDEISTGLD-SSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 356 aLv~~p~iLlLDEPTsGLD-s~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+.++|+++++|||..+|| +..+..+.+.++++.+ .|..+++++|.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~ 685 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSV 685 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 4567999999999999999 8888899999999875 577777776655
No 488
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=0.0054 Score=66.05 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHHHHHhhhccccCCCCCcccchhhHHHHHHHHHHHHH-h-hHHHH
Q 003389 519 SKWELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-N-GFAEN 595 (824)
Q Consensus 519 s~~~q~~~~~~R~~~~~~R~~~~-~~~r~~~~i~~ali~gt~f~~~~~~~~~~~~~~~~~g~lFf~~~~~~f-~-~~~~~ 595 (824)
..++.+.++.+|+.+...|++.+ +.--++.-+++.++.+.+|-.+-.. . +-++.-.++.+++...| + +.++-
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~-~----~~~~~~~l~~G~~~w~f~~~~i~~~ 89 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRS-P----GLNFLAYLLAGLILWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhC-C----CcchHHHHHHHHHHHHHHHHHHHhH
Confidence 45778889999999998887643 2334444444555444444332111 1 12233333333332222 2 22222
Q ss_pred HHHh-hhhhHHHHHhhcCccchHHHHHHHHHHHHHHHHHhHhhhheeeecccCCCchhHHHHHHHHHHHHHHHhHHHHHH
Q 003389 596 AMTV-LRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYR 674 (824)
Q Consensus 596 ~~~~-~~~~vf~ker~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Y~~~Gl~~~~~~Ff~~~l~l~l~~~~~~sl~~ 674 (824)
...+ ++...+.| .. .|+..+.++.++.++--.++..++....+=+.-+.+ ...+......+.+....+.+++.
T Consensus 90 ~~s~~~n~~li~k-~~---~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l 163 (263)
T COG1682 90 AGSVVANAALIKK-IN---FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGL 163 (263)
T ss_pred HHHhhhhHHHHhC-CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 33333332 22 477888888888887665555444433333333333 33444444455555556666666
Q ss_pred HHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHH
Q 003389 675 LVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVN 733 (824)
Q Consensus 675 ~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~N 733 (824)
++|+++--.---..+-+.+.-+++..+|.+-+.+.+|.-++|+..+||+.+-.|.+=..
T Consensus 164 ~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~ 222 (263)
T COG1682 164 ILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAP 222 (263)
T ss_pred HHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHH
Confidence 66666554433334445666777778999999999999999999999999999875443
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.82 E-value=8.1e-06 Score=84.52 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=26.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|++++|.||||||||||+++|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999998763
No 490
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.80 E-value=0.0033 Score=67.26 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=92.0
Q ss_pred hHHHHHhhcCc--------cchHHHHHHHHHHHHHHHHHhHhhhhee------eecc-cCCCchhHHHHHHHHHHHHHHH
Q 003389 603 PIFYKQRDHLF--------YPSWAFALPIWLLRIPISILDSTIWVAL------TYYT-IGYDPAASRFFKQFLAFFSIHN 667 (824)
Q Consensus 603 ~vf~ker~~~~--------Y~~~ay~la~~l~~iP~~~~~~~if~~i------~Y~~-~Gl~~~~~~Ff~~~l~l~l~~~ 667 (824)
..+-+||+.+- ++-+.++++|++.-+...++ .++...+ .++. .|.+.+...++...+...++..
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLL-LLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL 166 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 46777887763 35678999999998877432 1111111 1222 4556666666655544443333
Q ss_pred ---hHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhcccc---CCCCchhhh--HhhhhhCHHHHHHHHHHHHhhcCCc
Q 003389 668 ---MSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVM---AKDDIEPFL--RWGYYISPMMYGQTSLLVNEFLGGR 739 (824)
Q Consensus 668 ---~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i---~~~~ip~w~--~W~~~iSp~~Ya~~al~~NEf~~~~ 739 (824)
+..+++.++++++++...|..++..+............ ....-.+|. ..+.+++|..+ ++.+..+...+..
T Consensus 167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 245 (277)
T PF12679_consen 167 AVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF 245 (277)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc
Confidence 45789999999999988888777665555533333322 111111111 23466666542 2222211111000
Q ss_pred ccCCCCCCCCcccchhHHHHhhcCCccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 003389 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAAL 793 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~~L~~~~v~f~~l~~laL 793 (824)
. ..+.|.++++++++.++|..+++...
T Consensus 246 -----------~----------------~~~~~~~~~~~~~~~~v~l~la~~~F 272 (277)
T PF12679_consen 246 -----------V----------------WLSTWPSLLILLAYTLVFLALAYYRF 272 (277)
T ss_pred -----------c----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 03468889999999999998888543
No 491
>PRK13764 ATPase; Provisional
Probab=97.79 E-value=0.00014 Score=86.18 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=44.0
Q ss_pred HHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc--------------CchhHHhhcCeEEEEcCCeE
Q 003389 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ--------------PAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 357 Lv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q--------------~~~e~~~lfD~iilL~~G~i 422 (824)
|..+|+++++||.=..-| ++.+..++. .|..++.++|. ....+...+|+|+.+.+|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEE
Confidence 667899999999985322 233333332 25567777762 34456678999999999999
Q ss_pred --EEecCh
Q 003389 423 --VYQGPR 428 (824)
Q Consensus 423 --v~~G~~ 428 (824)
+|.+..
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 777763
No 492
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.79 E-value=0.00053 Score=73.72 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=34.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+.|+++.+-+++|+++.|.||+|+|||||+..++...
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999999999999887543
No 493
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.78 E-value=1.3e-05 Score=88.55 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=54.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC---------CCCCceEEEEecCCCCCCCCCHHHH
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---------FVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~---------~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
++|++++++||||+||||++..|++.+.+. .|+|.+.+.+... ...++.+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 579999999999999999999999998764 6899987776521 1113457888887665666677777
Q ss_pred HHHh
Q 003389 266 LDFS 269 (824)
Q Consensus 266 L~f~ 269 (824)
+..+
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 7654
No 494
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.78 E-value=3.3e-05 Score=100.20 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=49.2
Q ss_pred CCCCCHHHHHHHH----HHHH--------HHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc
Q 003389 340 RRGISGGQKKRVT----TGEM--------LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (824)
Q Consensus 340 ~rgLSGGqrqRvs----IA~a--------Lv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~ 401 (824)
..+||||||||+. +|.+ +..+|++++|||||+|||+.+...+++.++++ +.++|++++
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~ 1314 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSE 1314 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEcc
Confidence 4679999999996 4644 55799999999999999999999999999887 567777653
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.77 E-value=2.2e-05 Score=79.85 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
|++++|+||||||||||+++|++.+.+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEECC
Confidence 789999999999999999999998654 4666665544
No 496
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.74 E-value=8.4e-05 Score=83.77 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=41.7
Q ss_pred cCCcEeEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhCCcEEEEEEccCc-------hhHHhhcCeEEEEcCC
Q 003389 359 GTANVLYMDEIST----GLD-----SSTTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDLFDDIILLSEG 420 (824)
Q Consensus 359 ~~p~iLlLDEPTs----GLD-----s~t~~~I~~~L~~l~~~~~~tvIisi~q~~-------~e~~~lfD~iilL~~G 420 (824)
.+|+++++|+..+ .+| .....+++..|+++++..+.|++++-|-.. ..+..++|.|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 4799999999743 333 123445667788888888888888644221 1256778999988643
No 497
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.74 E-value=8.1e-05 Score=93.51 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=66.3
Q ss_pred cCCCCCHHHHHHHHHHHHH------HcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 339 MRRGISGGQKKRVTTGEML------VGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aL------v~~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
++..|||||+=.++||-+| ..+ -++|||||||..||+.+...+++.|..+... +.+|+|++|++ +..+.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHHh
Confidence 6778999999988887554 345 6899999999999999999999999999874 78888877754 67789
Q ss_pred cCeEEEEcC
Q 003389 411 FDDIILLSE 419 (824)
Q Consensus 411 fD~iilL~~ 419 (824)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
No 498
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.73 E-value=5.8e-05 Score=67.86 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=36.6
Q ss_pred CCCCCHHHH-HHHHHHHH------HHc------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 003389 340 RRGISGGQK-KRVTTGEM------LVG------TANVLYMDEISTGLDSSTTFQICKFLKQ 387 (824)
Q Consensus 340 ~rgLSGGqr-qRvsIA~a------Lv~------~p~iLlLDEPTsGLDs~t~~~I~~~L~~ 387 (824)
..++||||| ..+.++.+ +-. .|++++||||+++||......+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 346999999 44444432 222 3799999999999999999999999875
No 499
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.72 E-value=0.005 Score=66.39 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=48.0
Q ss_pred HHHhHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhhccccCCCCchhhhHhhhhhCHHHHHHHHHHHHhh
Q 003389 665 IHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (824)
Q Consensus 665 ~~~~~~sl~~~iaa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~w~~W~~~iSp~~Ya~~al~~NEf 735 (824)
....+.+++.++|+++.-.--...+-++++-+++..+|.+-+.+.+|.+++|+.+.||+.+..|+.=..-|
T Consensus 158 ~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~ 228 (264)
T PRK15176 158 AWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMF 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 34444455555554443222223344466677778888888889999999999999999999997544433
No 500
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.72 E-value=4.2e-05 Score=84.39 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=44.4
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~ 236 (824)
.+..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++ .|.+..-|.
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iGe 105 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIGE 105 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEec
Confidence 346799999 999999999999999999999999999998876 576666553
Done!