Query 003389
Match_columns 824
No_of_seqs 631 out of 3568
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 23:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.3E-44 4.4E-49 399.6 26.1 222 183-455 40-267 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 5.6E-45 1.9E-49 402.2 21.2 207 183-432 16-227 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 8.5E-45 2.9E-49 403.4 20.8 207 183-432 15-222 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 4E-44 1.4E-48 383.6 21.7 207 184-433 21-233 (275)
5 1z47_A CYSA, putative ABC-tran 100.0 3.9E-44 1.3E-48 395.5 21.8 207 183-432 27-234 (355)
6 2yyz_A Sugar ABC transporter, 100.0 5.5E-44 1.9E-48 395.2 21.3 207 183-432 15-222 (359)
7 3tif_A Uncharacterized ABC tra 100.0 5.7E-44 2E-48 374.3 19.4 207 184-431 18-232 (235)
8 4g1u_C Hemin import ATP-bindin 100.0 5.2E-43 1.8E-47 373.5 26.3 205 183-432 23-236 (266)
9 3d31_A Sulfate/molybdate ABC t 100.0 1.3E-43 4.4E-48 391.0 21.5 214 186-453 15-229 (348)
10 2pcj_A ABC transporter, lipopr 100.0 1.5E-43 5.2E-48 368.5 20.7 200 184-428 17-223 (224)
11 2it1_A 362AA long hypothetical 100.0 1.8E-43 6.3E-48 391.4 22.5 207 183-432 15-222 (362)
12 1g29_1 MALK, maltose transport 100.0 1.1E-43 3.9E-48 394.9 20.8 207 183-432 15-228 (372)
13 2olj_A Amino acid ABC transpor 100.0 3.1E-43 1.1E-47 374.4 22.6 205 184-432 37-247 (263)
14 1b0u_A Histidine permease; ABC 100.0 1.8E-43 6E-48 376.5 20.1 205 184-432 19-241 (262)
15 1oxx_K GLCV, glucose, ABC tran 100.0 1.1E-43 3.9E-48 392.5 19.1 204 186-432 20-229 (353)
16 1v43_A Sugar-binding transport 100.0 1.1E-43 3.9E-48 394.4 18.7 206 184-432 24-230 (372)
17 3nh6_A ATP-binding cassette SU 100.0 5.7E-43 1.9E-47 379.6 23.7 257 97-433 18-277 (306)
18 1g6h_A High-affinity branched- 100.0 2.9E-43 9.9E-48 373.8 20.6 213 184-430 20-239 (257)
19 1vpl_A ABC transporter, ATP-bi 100.0 7.5E-43 2.6E-47 370.2 21.3 207 183-433 27-235 (256)
20 1ji0_A ABC transporter; ATP bi 100.0 9.4E-43 3.2E-47 366.2 20.8 204 184-432 19-227 (240)
21 2onk_A Molybdate/tungstate ABC 100.0 1E-42 3.4E-47 365.9 19.0 201 186-432 14-215 (240)
22 2yz2_A Putative ABC transporte 100.0 4.3E-42 1.5E-46 366.6 21.0 205 184-433 20-227 (266)
23 2ihy_A ABC transporter, ATP-bi 100.0 6.2E-41 2.1E-45 359.8 22.1 208 184-431 34-250 (279)
24 2ff7_A Alpha-hemolysin translo 100.0 8.3E-41 2.8E-45 352.9 20.8 201 183-432 21-231 (247)
25 1mv5_A LMRA, multidrug resista 100.0 4.5E-41 1.5E-45 354.0 17.5 203 183-432 14-225 (243)
26 2ixe_A Antigen peptide transpo 100.0 1E-40 3.5E-45 356.8 20.0 209 184-433 32-245 (271)
27 2nq2_C Hypothetical ABC transp 100.0 2.3E-40 7.9E-45 350.6 22.4 197 184-431 18-215 (253)
28 4a82_A Cystic fibrosis transme 100.0 3.1E-40 1.1E-44 388.5 25.2 258 97-433 304-564 (578)
29 2qi9_C Vitamin B12 import ATP- 100.0 1.7E-40 5.7E-45 350.8 20.1 197 185-431 14-220 (249)
30 2d2e_A SUFC protein; ABC-ATPas 100.0 6.9E-41 2.4E-45 354.1 16.9 206 184-430 16-230 (250)
31 3qf4_A ABC transporter, ATP-bi 100.0 4.9E-40 1.7E-44 387.3 24.7 257 98-433 307-566 (587)
32 2zu0_C Probable ATP-dependent 100.0 3.1E-40 1.1E-44 352.4 19.7 221 184-441 33-261 (267)
33 2ghi_A Transport protein; mult 100.0 1.6E-39 5.4E-44 345.6 21.8 200 184-433 33-242 (260)
34 4f4c_A Multidrug resistance pr 100.0 6.3E-38 2.1E-42 398.7 40.4 258 97-433 379-641 (1321)
35 2pjz_A Hypothetical protein ST 100.0 9.4E-40 3.2E-44 347.7 19.6 194 184-432 18-214 (263)
36 3qf4_B Uncharacterized ABC tra 100.0 1.4E-39 5E-44 384.2 22.6 256 97-433 320-578 (598)
37 2yl4_A ATP-binding cassette SU 100.0 4.7E-39 1.6E-43 379.8 26.2 210 184-432 357-569 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 7.2E-39 2.5E-43 377.2 27.6 257 97-433 308-567 (582)
39 3gd7_A Fusion complex of cysti 100.0 1.7E-40 6E-45 371.0 12.9 201 183-433 33-242 (390)
40 3b60_A Lipid A export ATP-bind 100.0 6.8E-39 2.3E-43 377.5 27.1 209 184-433 356-567 (582)
41 4f4c_A Multidrug resistance pr 100.0 1.2E-39 4.1E-44 414.4 21.9 261 97-433 1041-1304(1321)
42 1sgw_A Putative ABC transporte 100.0 7.5E-40 2.6E-44 338.2 14.9 188 185-422 23-210 (214)
43 2pze_A Cystic fibrosis transme 100.0 1.1E-38 3.9E-43 332.8 19.9 197 183-432 20-217 (229)
44 2cbz_A Multidrug resistance-as 100.0 1.4E-38 4.6E-43 333.9 18.1 195 184-432 18-216 (237)
45 3g5u_A MCG1178, multidrug resi 100.0 1.1E-36 3.7E-41 386.5 23.8 208 184-433 403-613 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 1.6E-36 5.5E-41 327.1 17.8 195 184-432 51-246 (290)
47 3g5u_A MCG1178, multidrug resi 100.0 1.2E-35 4E-40 377.0 25.0 260 98-433 995-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 4.6E-33 1.6E-37 327.8 20.1 191 186-433 371-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 8.5E-33 2.9E-37 322.1 18.9 191 186-433 301-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-32 1.2E-36 316.4 20.6 192 186-432 283-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 4.7E-32 1.6E-36 318.9 19.7 193 184-433 360-559 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 3.2E-31 1.1E-35 308.7 15.2 182 185-420 36-234 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 3.8E-31 1.3E-35 311.5 15.4 182 185-420 106-304 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 6.2E-31 2.1E-35 314.6 16.5 215 183-432 30-297 (670)
55 2iw3_A Elongation factor 3A; a 100.0 1.8E-29 6.1E-34 307.4 25.4 185 184-433 448-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-29 5.9E-34 302.1 19.9 106 319-432 524-639 (670)
57 2iw3_A Elongation factor 3A; a 100.0 4.1E-30 1.4E-34 313.0 12.2 234 170-427 671-981 (986)
58 3ozx_A RNAse L inhibitor; ATP 100.0 5.2E-29 1.8E-33 289.8 12.5 175 194-422 22-215 (538)
59 3j16_B RLI1P; ribosome recycli 100.0 1.4E-28 4.7E-33 289.4 12.9 194 179-424 86-301 (608)
60 3pih_A Uvrabc system protein A 99.9 4E-26 1.4E-30 277.8 24.2 108 318-432 785-901 (916)
61 2r6f_A Excinuclease ABC subuni 99.9 7.3E-27 2.5E-31 282.5 16.9 106 319-432 826-941 (972)
62 2ygr_A Uvrabc system protein A 99.9 3E-26 1E-30 278.1 19.3 107 319-433 844-960 (993)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 4E-29 1.4E-33 285.4 -5.8 185 188-432 129-337 (460)
64 2vf7_A UVRA2, excinuclease ABC 99.9 2.3E-26 8E-31 277.7 17.7 108 317-432 709-826 (842)
65 4aby_A DNA repair protein RECN 99.9 1.9E-25 6.6E-30 251.5 16.5 236 184-426 48-381 (415)
66 3b85_A Phosphate starvation-in 99.9 2.7E-25 9.3E-30 228.4 -5.1 149 178-403 7-158 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.4E-22 1.2E-26 222.3 17.6 83 339-424 276-364 (365)
68 1e69_A Chromosome segregation 99.9 1.3E-22 4.5E-27 221.7 11.5 86 341-430 218-310 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 1.4E-24 4.8E-29 244.1 -5.4 172 184-415 36-248 (413)
70 2v9p_A Replication protein E1; 99.9 4.6E-25 1.6E-29 238.7 -11.0 169 171-438 102-271 (305)
71 4gp7_A Metallophosphoesterase; 99.9 1.3E-22 4.4E-27 201.6 6.0 60 343-403 84-159 (171)
72 1ye8_A Protein THEP1, hypothet 99.9 7.8E-23 2.7E-27 205.0 4.3 144 199-424 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 99.8 2.8E-22 9.5E-27 217.3 0.6 175 187-422 90-284 (302)
74 3sop_A Neuronal-specific septi 99.8 6.1E-22 2.1E-26 211.3 -2.6 146 199-402 4-149 (270)
75 2dpy_A FLII, flagellum-specifi 99.8 7.1E-22 2.4E-26 224.4 -4.4 191 171-431 132-342 (438)
76 2og2_A Putative signal recogni 99.8 4.7E-21 1.6E-25 211.9 1.7 174 188-422 148-341 (359)
77 1znw_A Guanylate kinase, GMP k 99.8 3.7E-23 1.3E-27 211.4 -15.3 178 184-418 9-202 (207)
78 1z6g_A Guanylate kinase; struc 99.8 2.9E-23 1E-27 214.5 -17.1 171 184-419 10-193 (218)
79 2o5v_A DNA replication and rep 99.8 1.9E-18 6.6E-23 191.2 16.6 86 337-431 259-354 (359)
80 1cr0_A DNA primase/helicase; R 99.8 1.5E-19 5E-24 194.6 6.7 187 183-422 21-237 (296)
81 3aez_A Pantothenate kinase; tr 99.8 1.5E-20 5.2E-25 204.6 -2.8 128 189-375 81-209 (312)
82 2jeo_A Uridine-cytidine kinase 99.7 1.8E-19 6.1E-24 189.0 2.9 154 183-402 11-164 (245)
83 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.8E-19 6E-24 197.7 2.8 133 185-422 159-292 (330)
84 4ad8_A DNA repair protein RECN 99.7 4E-18 1.4E-22 197.9 12.7 77 340-420 394-473 (517)
85 3qkt_A DNA double-strand break 99.7 2.9E-17 9.8E-22 180.7 17.7 77 339-418 245-327 (339)
86 1tf7_A KAIC; homohexamer, hexa 99.7 1.1E-17 3.8E-22 194.5 11.6 156 191-421 275-444 (525)
87 3pih_A Uvrabc system protein A 99.7 1E-17 3.6E-22 204.1 11.7 169 212-433 383-560 (916)
88 2obl_A ESCN; ATPase, hydrolase 99.7 5E-19 1.7E-23 195.2 -1.5 192 171-431 46-253 (347)
89 3thx_A DNA mismatch repair pro 99.7 1.8E-17 6.3E-22 202.7 9.7 89 341-431 720-811 (934)
90 4a74_A DNA repair and recombin 99.7 3.5E-18 1.2E-22 175.5 1.4 161 186-421 13-201 (231)
91 1tf7_A KAIC; homohexamer, hexa 99.7 3.1E-19 1.1E-23 207.6 -7.6 172 181-421 22-211 (525)
92 2r6f_A Excinuclease ABC subuni 99.7 2.2E-16 7.7E-21 191.4 14.6 104 321-432 487-599 (972)
93 2o8b_B DNA mismatch repair pro 99.7 6.5E-18 2.2E-22 209.0 0.1 160 183-429 768-938 (1022)
94 2eyu_A Twitching motility prot 99.6 3.5E-17 1.2E-21 173.7 4.0 133 185-419 15-147 (261)
95 2ehv_A Hypothetical protein PH 99.6 1.4E-17 4.9E-22 173.1 1.0 169 186-418 18-206 (251)
96 2vf7_A UVRA2, excinuclease ABC 99.6 3.6E-16 1.2E-20 189.1 13.2 104 321-432 362-474 (842)
97 3asz_A Uridine kinase; cytidin 99.6 1.3E-18 4.4E-23 177.4 -7.1 145 194-402 3-160 (211)
98 1pzn_A RAD51, DNA repair and r 99.6 3.8E-17 1.3E-21 180.5 0.6 171 184-429 117-311 (349)
99 3thx_B DNA mismatch repair pro 99.6 2.2E-16 7.7E-21 192.6 7.3 146 183-414 659-805 (918)
100 1rj9_A FTSY, signal recognitio 99.6 5.6E-17 1.9E-21 175.8 1.5 149 196-403 101-258 (304)
101 1ewq_A DNA mismatch repair pro 99.6 1.2E-16 4.1E-21 192.3 3.9 132 184-411 566-704 (765)
102 1w1w_A Structural maintenance 99.6 1.7E-15 5.9E-20 171.7 13.1 75 341-418 332-410 (430)
103 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.7E-15 5.6E-20 155.3 11.5 173 183-420 8-192 (235)
104 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 2.1E-15 7.1E-20 146.5 11.4 82 338-422 53-142 (148)
105 2i3b_A HCR-ntpase, human cance 99.6 9.9E-18 3.4E-22 169.5 -5.7 158 197-426 1-169 (189)
106 2ygr_A Uvrabc system protein A 99.6 3.2E-15 1.1E-19 182.0 14.5 105 321-433 504-617 (993)
107 2qnr_A Septin-2, protein NEDD5 99.6 2.2E-17 7.6E-22 178.7 -4.0 156 182-402 9-166 (301)
108 1nlf_A Regulatory protein REPA 99.6 7E-15 2.4E-19 156.9 13.1 152 192-403 25-181 (279)
109 3szr_A Interferon-induced GTP- 99.6 4E-17 1.4E-21 192.8 -5.9 171 191-434 42-238 (608)
110 1wb9_A DNA mismatch repair pro 99.6 8.3E-16 2.8E-20 186.0 4.7 158 183-427 594-752 (800)
111 1lw7_A Transcriptional regulat 99.5 9.5E-17 3.3E-21 178.2 -14.0 164 186-418 157-342 (365)
112 2qag_C Septin-7; cell cycle, c 99.5 1E-14 3.5E-19 164.4 2.1 162 170-402 11-176 (418)
113 2cvh_A DNA repair and recombin 99.5 1.1E-13 3.7E-18 140.9 9.6 78 343-420 85-185 (220)
114 3jvv_A Twitching mobility prot 99.4 2.3E-14 8E-19 158.4 3.5 133 186-420 114-246 (356)
115 1s96_A Guanylate kinase, GMP k 99.4 8.8E-15 3E-19 151.2 -0.3 150 191-436 10-163 (219)
116 1zp6_A Hypothetical protein AT 99.4 1.3E-15 4.3E-20 152.4 -6.7 140 193-388 5-147 (191)
117 1pui_A ENGB, probable GTP-bind 99.4 3.5E-15 1.2E-19 150.9 -4.0 65 321-390 132-198 (210)
118 1htw_A HI0065; nucleotide-bind 99.4 1.3E-14 4.3E-19 142.5 -0.3 78 184-268 20-97 (158)
119 2bdt_A BH3686; alpha-beta prot 99.4 1.6E-16 5.3E-21 159.2 -14.4 173 197-431 2-182 (189)
120 3kta_B Chromosome segregation 99.4 6E-13 2.1E-17 132.5 10.3 78 340-421 62-145 (173)
121 2gza_A Type IV secretion syste 99.4 1.3E-13 4.5E-18 152.8 5.5 136 186-421 164-303 (361)
122 2qag_B Septin-6, protein NEDD5 99.4 1.5E-13 5E-18 154.7 3.7 172 183-399 27-215 (427)
123 2bbw_A Adenylate kinase 4, AK4 99.4 8E-15 2.7E-19 153.4 -6.9 159 196-390 26-198 (246)
124 1n0w_A DNA repair protein RAD5 99.3 4.7E-13 1.6E-17 138.3 4.9 61 359-420 118-209 (243)
125 2ewv_A Twitching motility prot 99.3 2.7E-13 9.2E-18 151.0 2.1 132 185-418 126-257 (372)
126 1nij_A Hypothetical protein YJ 99.3 3.4E-15 1.2E-19 162.8 -13.0 156 198-404 5-190 (318)
127 2yhs_A FTSY, cell division pro 99.3 1.1E-13 3.7E-18 157.8 -1.4 81 187-270 283-372 (503)
128 2f1r_A Molybdopterin-guanine d 99.3 9.2E-15 3.2E-19 145.4 -9.8 139 198-391 3-162 (171)
129 2rcn_A Probable GTPase ENGC; Y 99.3 3.6E-13 1.2E-17 148.5 0.2 122 186-357 205-328 (358)
130 2qm8_A GTPase/ATPase; G protei 99.3 9.3E-14 3.2E-18 152.7 -6.3 180 184-390 42-260 (337)
131 3e70_C DPA, signal recognition 99.2 3.8E-13 1.3E-17 147.1 -2.1 164 194-422 126-306 (328)
132 1odf_A YGR205W, hypothetical 3 99.2 7.8E-13 2.7E-17 142.3 -0.1 132 195-377 29-169 (290)
133 3ec2_A DNA replication protein 99.2 1.6E-12 5.6E-17 129.0 1.9 48 358-406 98-146 (180)
134 1udx_A The GTP-binding protein 99.2 4.8E-13 1.6E-17 150.7 -2.3 169 187-413 147-318 (416)
135 2oap_1 GSPE-2, type II secreti 99.2 1.2E-13 3.9E-18 159.8 -10.7 85 184-271 247-331 (511)
136 3auy_A DNA double-strand break 99.2 4.5E-11 1.6E-15 132.8 10.6 75 340-418 278-359 (371)
137 2yv5_A YJEQ protein; hydrolase 99.2 5.8E-12 2E-16 136.3 1.8 125 194-355 162-300 (302)
138 3lda_A DNA repair protein RAD5 99.1 2E-11 6.9E-16 136.9 5.4 63 359-421 272-364 (400)
139 1p9r_A General secretion pathw 99.1 9.4E-13 3.2E-17 148.5 -6.1 139 183-366 155-315 (418)
140 1sxj_E Activator 1 40 kDa subu 99.1 7.7E-11 2.6E-15 129.0 7.2 136 200-405 39-176 (354)
141 3c8u_A Fructokinase; YP_612366 99.1 2.1E-12 7.2E-17 131.6 -6.9 30 194-223 19-48 (208)
142 1in4_A RUVB, holliday junction 99.0 1.7E-12 6E-17 142.1 -8.2 157 183-393 30-197 (334)
143 2kjq_A DNAA-related protein; s 99.0 2.5E-10 8.7E-15 110.6 8.0 47 358-406 81-128 (149)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 2.6E-13 9E-18 151.6 -15.7 168 193-429 16-209 (392)
145 1lvg_A Guanylate kinase, GMP k 99.0 2.6E-13 9E-18 137.6 -14.8 57 353-419 116-173 (198)
146 1u0l_A Probable GTPase ENGC; p 99.0 3E-11 1E-15 130.6 -0.4 74 192-269 164-259 (301)
147 2x8a_A Nuclear valosin-contain 99.0 3.1E-13 1.1E-17 144.2 -16.3 142 184-385 33-190 (274)
148 1t9h_A YLOQ, probable GTPase E 98.9 2.7E-10 9.2E-15 123.3 1.1 72 192-267 168-248 (307)
149 2dr3_A UPF0273 protein PH0284; 98.9 9.6E-09 3.3E-13 105.9 12.6 61 359-419 127-196 (247)
150 1sq5_A Pantothenate kinase; P- 98.9 1.9E-10 6.4E-15 124.7 -1.1 73 195-272 78-155 (308)
151 1vma_A Cell division protein F 98.9 1.8E-09 6E-14 117.0 6.3 114 190-390 97-213 (306)
152 3euj_A Chromosome partition pr 98.8 1E-09 3.5E-14 125.4 4.3 53 184-240 17-69 (483)
153 2r6a_A DNAB helicase, replicat 98.8 2E-09 6.8E-14 122.8 6.5 185 182-422 188-401 (454)
154 3k1j_A LON protease, ATP-depen 98.7 8E-10 2.7E-14 130.5 -0.7 172 182-387 45-227 (604)
155 1ls1_A Signal recognition part 98.7 3.4E-08 1.2E-12 106.3 11.9 118 188-388 91-209 (295)
156 2px0_A Flagellar biosynthesis 98.7 2.8E-08 9.4E-13 107.1 9.8 143 195-425 103-247 (296)
157 3tr0_A Guanylate kinase, GMP k 98.7 9.9E-10 3.4E-14 110.5 -1.7 71 191-268 1-74 (205)
158 2zr9_A Protein RECA, recombina 98.6 4.1E-08 1.4E-12 108.2 7.9 79 349-427 126-237 (349)
159 2ius_A DNA translocase FTSK; n 98.6 5.5E-09 1.9E-13 120.2 -0.6 165 189-404 159-343 (512)
160 1iy2_A ATP-dependent metallopr 98.5 9.4E-11 3.2E-15 124.7 -15.3 77 184-267 62-142 (278)
161 1oix_A RAS-related protein RAB 98.5 9.5E-09 3.2E-13 102.7 0.0 38 349-388 152-189 (191)
162 3lnc_A Guanylate kinase, GMP k 98.5 2.6E-08 8.8E-13 102.8 3.1 40 184-223 14-54 (231)
163 1ixz_A ATP-dependent metallopr 98.5 1.4E-10 4.8E-15 121.4 -15.1 77 184-267 38-118 (254)
164 3hr8_A Protein RECA; alpha and 98.5 7.9E-08 2.7E-12 106.0 5.0 41 192-235 56-97 (356)
165 1qhl_A Protein (cell division 98.5 7E-09 2.4E-13 107.5 -3.3 59 191-253 22-91 (227)
166 4eun_A Thermoresistant glucoki 98.3 2.4E-08 8.1E-13 100.8 -3.1 71 191-268 23-95 (200)
167 3kta_A Chromosome segregation 98.3 6.5E-07 2.2E-11 88.3 6.0 65 186-254 14-89 (182)
168 2ce7_A Cell division protein F 98.3 1.8E-06 6.2E-11 98.7 10.1 59 345-403 93-164 (476)
169 4a1f_A DNAB helicase, replicat 98.3 2.2E-06 7.5E-11 93.8 10.0 131 182-399 31-162 (338)
170 2f9l_A RAB11B, member RAS onco 98.2 4.2E-07 1.4E-11 90.9 2.4 37 351-389 130-166 (199)
171 2j41_A Guanylate kinase; GMP, 98.2 7E-07 2.4E-11 89.5 3.3 33 192-224 1-33 (207)
172 2qtf_A Protein HFLX, GTP-bindi 98.1 7.9E-07 2.7E-11 98.5 3.6 155 199-390 181-353 (364)
173 1zu4_A FTSY; GTPase, signal re 98.1 4.6E-07 1.6E-11 98.6 1.3 81 186-269 94-187 (320)
174 3a00_A Guanylate kinase, GMP k 98.1 8.1E-07 2.8E-11 88.5 2.5 27 197-223 1-27 (186)
175 3nwj_A ATSK2; P loop, shikimat 98.1 3.1E-07 1E-11 96.6 -0.9 52 171-222 18-73 (250)
176 3uie_A Adenylyl-sulfate kinase 98.1 3E-07 1E-11 92.6 -1.8 53 183-239 11-65 (200)
177 4e22_A Cytidylate kinase; P-lo 98.0 7E-07 2.4E-11 93.6 0.7 62 186-253 19-95 (252)
178 3vaa_A Shikimate kinase, SK; s 98.0 1.8E-06 6.2E-11 86.8 2.9 39 183-221 11-49 (199)
179 1kgd_A CASK, peripheral plasma 97.9 3E-06 1E-10 83.9 3.1 39 195-235 3-41 (180)
180 2dhr_A FTSH; AAA+ protein, hex 97.9 1.2E-07 4E-12 109.2 -9.2 76 184-266 53-132 (499)
181 2xau_A PRE-mRNA-splicing facto 97.9 1.2E-05 4.2E-10 97.4 7.4 72 342-414 190-262 (773)
182 2vp4_A Deoxynucleoside kinase; 97.9 3.5E-06 1.2E-10 86.9 1.7 42 191-239 14-55 (230)
183 3bh0_A DNAB-like replicative h 97.8 5.2E-05 1.8E-09 82.1 10.6 131 182-399 53-187 (315)
184 1svm_A Large T antigen; AAA+ f 97.8 4.5E-06 1.6E-10 92.7 1.3 44 184-233 156-199 (377)
185 2e87_A Hypothetical protein PH 97.8 5.6E-05 1.9E-09 83.2 9.5 56 342-400 231-287 (357)
186 1rz3_A Hypothetical protein rb 97.7 7.7E-06 2.6E-10 82.4 1.8 42 194-238 19-60 (201)
187 1knq_A Gluconate kinase; ALFA/ 97.7 1.2E-05 4.2E-10 78.5 3.0 37 195-238 6-42 (175)
188 3b9p_A CG5977-PA, isoform A; A 97.7 0.00018 6.1E-09 76.4 12.2 27 195-221 52-78 (297)
189 2z4s_A Chromosomal replication 97.7 3.3E-05 1.1E-09 87.6 6.6 96 359-457 193-296 (440)
190 3tau_A Guanylate kinase, GMP k 97.7 1.9E-05 6.4E-10 80.1 3.9 29 195-223 6-34 (208)
191 3t34_A Dynamin-related protein 97.7 0.00014 4.6E-09 80.1 11.2 47 184-236 24-72 (360)
192 1v5w_A DMC1, meiotic recombina 97.7 0.00016 5.4E-09 79.3 11.2 35 186-220 110-145 (343)
193 3ney_A 55 kDa erythrocyte memb 97.7 2E-05 7E-10 79.7 3.7 28 195-222 17-44 (197)
194 2dy1_A Elongation factor G; tr 97.7 7.6E-06 2.6E-10 97.6 0.6 48 191-240 3-50 (665)
195 3tqc_A Pantothenate kinase; bi 97.6 6.8E-06 2.3E-10 89.3 -0.2 40 184-223 73-118 (321)
196 2qt1_A Nicotinamide riboside k 97.6 2.8E-05 9.7E-10 78.2 4.2 30 192-221 16-45 (207)
197 2z43_A DNA repair and recombin 97.6 0.00022 7.4E-09 77.4 10.6 36 185-220 94-130 (324)
198 3cr8_A Sulfate adenylyltranfer 97.6 1.4E-05 4.8E-10 93.0 1.0 44 192-238 364-409 (552)
199 1fnn_A CDC6P, cell division co 97.6 0.00047 1.6E-08 75.4 13.1 44 359-403 124-169 (389)
200 1kag_A SKI, shikimate kinase I 97.5 4E-05 1.4E-09 74.4 2.7 27 196-222 3-29 (173)
201 1ega_A Protein (GTP-binding pr 97.4 0.00011 3.9E-09 78.8 5.9 44 343-393 101-147 (301)
202 1lv7_A FTSH; alpha/beta domain 97.4 0.00053 1.8E-08 71.2 10.8 35 186-222 36-70 (257)
203 2p67_A LAO/AO transport system 97.4 2E-05 7E-10 86.2 -0.2 51 184-237 43-93 (341)
204 2q6t_A DNAB replication FORK h 97.4 0.00081 2.8E-08 76.1 12.4 39 183-221 186-224 (444)
205 3kl4_A SRP54, signal recogniti 97.3 0.00056 1.9E-08 77.1 10.1 37 196-235 96-132 (433)
206 3cf0_A Transitional endoplasmi 97.3 0.00019 6.4E-09 77.0 5.9 30 192-221 44-73 (301)
207 1ypw_A Transitional endoplasmi 97.3 0.00019 6.6E-09 87.3 6.3 33 191-223 232-264 (806)
208 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00013 4.4E-09 70.3 3.7 31 189-220 16-46 (149)
209 2www_A Methylmalonic aciduria 97.3 7.8E-05 2.7E-09 81.9 2.2 42 195-239 72-113 (349)
210 1cke_A CK, MSSA, protein (cyti 97.2 3.9E-05 1.3E-09 78.0 -0.4 57 197-253 5-73 (227)
211 2pez_A Bifunctional 3'-phospho 97.2 7.1E-05 2.4E-09 73.5 1.5 40 195-238 3-44 (179)
212 1u94_A RECA protein, recombina 97.2 0.0054 1.9E-07 67.4 16.1 36 186-221 50-87 (356)
213 3m6a_A ATP-dependent protease 97.2 8.8E-05 3E-09 86.3 1.7 48 185-236 97-144 (543)
214 2qby_A CDC6 homolog 1, cell di 97.1 0.00019 6.5E-09 78.2 3.3 29 195-223 43-71 (386)
215 4eaq_A DTMP kinase, thymidylat 97.1 0.00018 6.1E-09 74.2 2.9 38 186-223 12-52 (229)
216 1f6b_A SAR1; gtpases, N-termin 97.0 0.00016 5.5E-09 72.1 1.5 36 184-220 13-48 (198)
217 3llm_A ATP-dependent RNA helic 97.0 0.00026 8.9E-09 72.8 3.1 66 344-412 162-228 (235)
218 1m7g_A Adenylylsulfate kinase; 97.0 0.00013 4.6E-09 73.7 0.8 43 193-238 21-65 (211)
219 1mky_A Probable GTP-binding pr 97.0 0.00057 1.9E-08 77.3 5.9 41 198-238 181-230 (439)
220 2gj8_A MNME, tRNA modification 97.0 0.00053 1.8E-08 66.7 4.9 27 195-221 2-28 (172)
221 2i1q_A DNA repair and recombin 97.0 0.0035 1.2E-07 67.5 11.9 34 186-219 86-120 (322)
222 4fcw_A Chaperone protein CLPB; 97.0 0.002 6.7E-08 68.5 9.7 28 196-223 46-73 (311)
223 1l8q_A Chromosomal replication 96.9 0.00059 2E-08 73.5 5.2 46 359-405 97-143 (324)
224 1m2o_B GTP-binding protein SAR 96.9 0.00046 1.6E-08 68.2 3.9 35 185-220 12-46 (190)
225 3ice_A Transcription terminati 96.9 0.0003 1E-08 77.7 2.5 50 172-221 135-198 (422)
226 3h4m_A Proteasome-activating n 96.9 0.0018 6.3E-08 68.0 8.1 28 194-221 48-75 (285)
227 3bgw_A DNAB-like replicative h 96.8 0.0091 3.1E-07 67.6 14.1 38 183-220 183-220 (444)
228 1y63_A LMAJ004144AAA protein; 96.8 0.00048 1.6E-08 68.1 3.1 32 189-220 2-33 (184)
229 2yvu_A Probable adenylyl-sulfa 96.8 0.00044 1.5E-08 68.1 2.6 29 195-223 11-39 (186)
230 2qor_A Guanylate kinase; phosp 96.8 0.00044 1.5E-08 69.4 2.6 29 194-222 9-37 (204)
231 3qks_A DNA double-strand break 96.8 0.00065 2.2E-08 68.6 3.7 32 189-221 16-47 (203)
232 2ffh_A Protein (FFH); SRP54, s 96.8 0.00046 1.6E-08 77.7 2.7 46 188-238 91-136 (425)
233 2qag_A Septin-2, protein NEDD5 96.8 0.00016 5.6E-09 79.7 -0.9 44 183-235 29-72 (361)
234 2b8t_A Thymidine kinase; deoxy 96.8 0.0023 7.7E-08 65.9 7.6 53 360-418 89-150 (223)
235 1np6_A Molybdopterin-guanine d 96.7 0.00058 2E-08 67.5 2.9 40 198-237 7-46 (174)
236 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00024 8.1E-09 78.0 -0.6 38 185-222 10-49 (359)
237 1jjv_A Dephospho-COA kinase; P 96.7 0.00082 2.8E-08 67.3 3.4 69 344-418 61-131 (206)
238 1sxj_C Activator 1 40 kDa subu 96.7 0.00014 4.7E-09 79.1 -2.6 41 183-223 30-72 (340)
239 2zts_A Putative uncharacterize 96.6 0.0068 2.3E-07 61.8 10.3 61 358-418 133-206 (251)
240 2p5t_B PEZT; postsegregational 96.6 0.00064 2.2E-08 70.9 2.3 47 186-238 22-68 (253)
241 1j8m_F SRP54, signal recogniti 96.6 0.00034 1.2E-08 75.1 0.1 46 188-237 89-135 (297)
242 3lxx_A GTPase IMAP family memb 96.6 0.0088 3E-07 61.3 10.7 25 199-223 31-55 (239)
243 1xp8_A RECA protein, recombina 96.6 0.031 1.1E-06 61.6 15.6 29 192-220 69-97 (366)
244 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0011 3.8E-08 73.8 3.4 45 190-237 15-70 (396)
245 2if2_A Dephospho-COA kinase; a 96.5 0.0011 3.7E-08 66.1 3.0 21 199-219 3-23 (204)
246 1q57_A DNA primase/helicase; d 96.5 0.033 1.1E-06 63.8 15.7 37 184-220 229-265 (503)
247 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.011 3.7E-07 60.9 10.6 27 195-221 37-63 (262)
248 3cmw_A Protein RECA, recombina 96.4 0.0052 1.8E-07 79.5 9.1 30 193-222 728-757 (1706)
249 3d8b_A Fidgetin-like protein 1 96.4 0.015 5.3E-07 63.5 11.6 27 195-221 115-141 (357)
250 3t61_A Gluconokinase; PSI-biol 96.4 0.0011 3.7E-08 66.2 2.1 25 197-221 18-42 (202)
251 3cm0_A Adenylate kinase; ATP-b 96.4 0.0016 5.5E-08 63.7 3.3 27 195-221 2-28 (186)
252 2wjg_A FEOB, ferrous iron tran 96.3 0.0015 5.2E-08 63.6 2.9 22 199-220 9-30 (188)
253 3kb2_A SPBC2 prophage-derived 96.3 0.0015 5E-08 62.9 2.6 24 199-222 3-26 (173)
254 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.038 1.3E-06 59.6 14.1 28 194-221 42-69 (322)
255 1qhx_A CPT, protein (chloramph 96.3 0.0019 6.5E-08 62.7 3.2 26 197-222 3-28 (178)
256 2wji_A Ferrous iron transport 96.2 0.0022 7.7E-08 61.5 3.4 23 199-221 5-27 (165)
257 1q3t_A Cytidylate kinase; nucl 96.1 0.0023 7.9E-08 65.7 2.9 29 193-221 12-40 (236)
258 4b4t_J 26S protease regulatory 96.1 0.033 1.1E-06 62.0 12.2 29 194-222 179-207 (405)
259 3io5_A Recombination and repai 96.0 0.024 8.4E-07 61.1 10.6 26 192-218 24-49 (333)
260 1kht_A Adenylate kinase; phosp 96.0 0.0032 1.1E-07 61.5 3.5 27 196-222 2-28 (192)
261 2rhm_A Putative kinase; P-loop 96.0 0.0029 9.8E-08 62.1 3.1 27 195-221 3-29 (193)
262 3auy_A DNA double-strand break 96.0 0.0029 9.8E-08 69.8 3.2 31 187-218 16-46 (371)
263 3r20_A Cytidylate kinase; stru 96.0 0.0026 9E-08 65.8 2.7 25 197-221 9-33 (233)
264 2v1u_A Cell division control p 96.0 0.0073 2.5E-07 65.6 6.4 28 195-222 42-69 (387)
265 2ze6_A Isopentenyl transferase 95.9 0.0032 1.1E-07 65.7 2.9 25 198-222 2-26 (253)
266 2zej_A Dardarin, leucine-rich 95.9 0.0036 1.2E-07 61.2 3.1 23 199-221 4-26 (184)
267 2v54_A DTMP kinase, thymidylat 95.9 0.0043 1.5E-07 61.5 3.6 26 196-221 3-28 (204)
268 3cmw_A Protein RECA, recombina 95.8 0.076 2.6E-06 68.8 15.7 36 185-220 369-406 (1706)
269 3trf_A Shikimate kinase, SK; a 95.8 0.0044 1.5E-07 60.6 3.5 26 196-221 4-29 (185)
270 2jaq_A Deoxyguanosine kinase; 95.8 0.0035 1.2E-07 62.0 2.7 24 199-222 2-25 (205)
271 3lw7_A Adenylate kinase relate 95.8 0.0042 1.5E-07 59.3 3.3 19 199-217 3-21 (179)
272 2plr_A DTMP kinase, probable t 95.8 0.0049 1.7E-07 61.3 3.8 28 196-223 3-30 (213)
273 1gvn_B Zeta; postsegregational 95.8 0.005 1.7E-07 65.6 3.9 36 195-235 31-66 (287)
274 1ly1_A Polynucleotide kinase; 95.7 0.0053 1.8E-07 59.3 3.5 22 198-219 3-24 (181)
275 3iij_A Coilin-interacting nucl 95.7 0.0046 1.6E-07 60.3 3.0 26 196-221 10-35 (180)
276 1via_A Shikimate kinase; struc 95.7 0.0039 1.3E-07 60.6 2.5 23 199-221 6-28 (175)
277 4b4t_K 26S protease regulatory 95.7 0.061 2.1E-06 60.5 12.4 29 194-222 203-231 (428)
278 1vht_A Dephospho-COA kinase; s 95.7 0.0057 2E-07 61.7 3.6 24 196-219 3-26 (218)
279 1xx6_A Thymidine kinase; NESG, 95.7 0.019 6.6E-07 57.4 7.4 53 360-418 81-142 (191)
280 3hu3_A Transitional endoplasmi 95.6 0.016 5.6E-07 66.3 7.7 28 194-221 235-262 (489)
281 2c95_A Adenylate kinase 1; tra 95.6 0.0053 1.8E-07 60.3 3.1 27 195-221 7-33 (196)
282 2wwf_A Thymidilate kinase, put 95.6 0.0056 1.9E-07 61.1 3.4 27 195-221 8-34 (212)
283 1xjc_A MOBB protein homolog; s 95.6 0.0049 1.7E-07 60.6 2.7 26 198-223 5-30 (169)
284 2bwj_A Adenylate kinase 5; pho 95.5 0.0025 8.5E-08 62.9 0.4 28 194-221 9-36 (199)
285 1tev_A UMP-CMP kinase; ploop, 95.5 0.0071 2.4E-07 59.1 3.7 26 196-221 2-27 (196)
286 1nn5_A Similar to deoxythymidy 95.5 0.0063 2.2E-07 60.7 3.3 27 195-221 7-33 (215)
287 1aky_A Adenylate kinase; ATP:A 95.4 0.0076 2.6E-07 60.9 3.6 27 195-221 2-28 (220)
288 1gtv_A TMK, thymidylate kinase 95.4 0.0027 9.3E-08 63.5 0.2 25 199-223 2-26 (214)
289 1uf9_A TT1252 protein; P-loop, 95.4 0.0079 2.7E-07 59.4 3.5 24 197-220 8-31 (203)
290 1ex7_A Guanylate kinase; subst 95.4 0.0063 2.2E-07 60.7 2.8 24 198-221 2-25 (186)
291 1nks_A Adenylate kinase; therm 95.4 0.0076 2.6E-07 58.8 3.3 24 199-222 3-26 (194)
292 1jal_A YCHF protein; nucleotid 95.3 0.013 4.3E-07 64.6 5.1 39 198-236 3-49 (363)
293 3cmu_A Protein RECA, recombina 95.3 0.16 5.4E-06 66.8 15.9 37 185-221 369-407 (2050)
294 2j9r_A Thymidine kinase; TK1, 95.3 0.049 1.7E-06 55.5 8.9 53 360-418 101-162 (214)
295 3k53_A Ferrous iron transport 95.2 0.0078 2.7E-07 63.1 3.0 23 199-221 5-27 (271)
296 2vli_A Antibiotic resistance p 95.2 0.0071 2.4E-07 58.8 2.3 26 196-221 4-29 (183)
297 3ihw_A Centg3; RAS, centaurin, 95.1 0.015 5.1E-07 56.9 4.5 22 199-220 22-43 (184)
298 2cdn_A Adenylate kinase; phosp 95.1 0.012 4E-07 58.6 3.6 26 196-221 19-44 (201)
299 1zd8_A GTP:AMP phosphotransfer 95.1 0.01 3.5E-07 60.3 3.3 27 195-221 5-31 (227)
300 3ake_A Cytidylate kinase; CMP 95.1 0.0087 3E-07 59.4 2.7 23 199-221 4-26 (208)
301 1z2a_A RAS-related protein RAB 95.0 0.01 3.6E-07 56.0 2.9 23 199-221 7-29 (168)
302 2ged_A SR-beta, signal recogni 95.0 0.011 3.6E-07 57.8 3.0 25 197-221 48-72 (193)
303 3q72_A GTP-binding protein RAD 95.0 0.0098 3.4E-07 56.2 2.6 23 199-221 4-26 (166)
304 2nzj_A GTP-binding protein REM 95.0 0.012 4E-07 56.1 3.2 23 199-221 6-28 (175)
305 2erx_A GTP-binding protein DI- 95.0 0.012 4.1E-07 55.7 3.2 22 199-220 5-26 (172)
306 4ag6_A VIRB4 ATPase, type IV s 94.9 0.0093 3.2E-07 66.0 2.7 45 359-404 261-308 (392)
307 1kao_A RAP2A; GTP-binding prot 94.9 0.012 3.9E-07 55.4 3.0 23 199-221 5-27 (167)
308 2z0h_A DTMP kinase, thymidylat 94.9 0.013 4.4E-07 57.6 3.3 23 199-221 2-24 (197)
309 1u8z_A RAS-related protein RAL 94.9 0.012 4.1E-07 55.3 2.9 23 199-221 6-28 (168)
310 3umf_A Adenylate kinase; rossm 94.9 0.014 4.9E-07 59.6 3.7 29 193-221 25-53 (217)
311 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.015 5E-07 60.8 3.8 27 195-221 2-28 (260)
312 2dyk_A GTP-binding protein; GT 94.9 0.012 4.3E-07 55.1 3.0 23 199-221 3-25 (161)
313 2ce2_X GTPase HRAS; signaling 94.8 0.012 3.9E-07 55.2 2.7 23 199-221 5-27 (166)
314 3bos_A Putative DNA replicatio 94.8 0.013 4.6E-07 58.9 3.4 27 196-222 51-77 (242)
315 3q85_A GTP-binding protein REM 94.8 0.013 4.5E-07 55.5 3.1 22 200-221 5-26 (169)
316 3fb4_A Adenylate kinase; psych 94.8 0.014 4.7E-07 58.6 3.3 23 199-221 2-24 (216)
317 1ukz_A Uridylate kinase; trans 94.8 0.015 5.1E-07 57.7 3.5 25 197-221 15-39 (203)
318 3tw8_B RAS-related protein RAB 94.8 0.013 4.3E-07 56.1 2.9 23 199-221 11-33 (181)
319 1z0j_A RAB-22, RAS-related pro 94.8 0.013 4.5E-07 55.4 3.0 23 199-221 8-30 (170)
320 1qf9_A UMP/CMP kinase, protein 94.8 0.015 5.2E-07 56.6 3.4 25 197-221 6-30 (194)
321 3b1v_A Ferrous iron uptake tra 94.8 0.02 7E-07 60.4 4.6 23 199-221 5-27 (272)
322 1ek0_A Protein (GTP-binding pr 94.7 0.014 4.7E-07 55.2 2.9 23 199-221 5-27 (170)
323 2pbr_A DTMP kinase, thymidylat 94.7 0.015 5.1E-07 56.8 3.3 23 199-221 2-24 (195)
324 1g16_A RAS-related protein SEC 94.7 0.013 4.3E-07 55.5 2.7 23 199-221 5-27 (170)
325 1z08_A RAS-related protein RAB 94.7 0.014 4.7E-07 55.3 3.0 23 199-221 8-30 (170)
326 1zuh_A Shikimate kinase; alpha 94.7 0.016 5.4E-07 55.8 3.4 24 198-221 8-31 (168)
327 1zak_A Adenylate kinase; ATP:A 94.7 0.012 4.2E-07 59.4 2.7 26 196-221 4-29 (222)
328 2lkc_A Translation initiation 94.7 0.018 6E-07 55.1 3.7 25 196-220 7-31 (178)
329 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.014 4.8E-07 55.8 3.0 23 199-221 9-31 (177)
330 2iyv_A Shikimate kinase, SK; t 94.7 0.012 4.3E-07 57.3 2.6 24 198-221 3-26 (184)
331 1e6c_A Shikimate kinase; phosp 94.7 0.013 4.6E-07 56.2 2.8 24 198-221 3-26 (173)
332 1c1y_A RAS-related protein RAP 94.7 0.014 4.9E-07 55.0 2.9 22 199-220 5-26 (167)
333 3tlx_A Adenylate kinase 2; str 94.7 0.017 5.8E-07 59.7 3.7 26 196-221 28-53 (243)
334 3dl0_A Adenylate kinase; phosp 94.7 0.016 5.3E-07 58.2 3.3 23 199-221 2-24 (216)
335 1ky3_A GTP-binding protein YPT 94.7 0.015 5.1E-07 55.7 3.0 23 199-221 10-32 (182)
336 2w58_A DNAI, primosome compone 94.6 0.015 5.3E-07 57.6 3.1 25 198-222 55-79 (202)
337 1svi_A GTP-binding protein YSX 94.6 0.014 4.7E-07 57.0 2.7 23 199-221 25-47 (195)
338 1fzq_A ADP-ribosylation factor 94.6 0.014 4.9E-07 56.8 2.6 22 199-220 18-39 (181)
339 1jbk_A CLPB protein; beta barr 94.6 0.019 6.5E-07 55.2 3.5 27 196-222 42-68 (195)
340 2fn4_A P23, RAS-related protei 94.6 0.015 5.2E-07 55.6 2.7 22 199-220 11-32 (181)
341 1r2q_A RAS-related protein RAB 94.5 0.016 5.6E-07 54.6 2.9 22 199-220 8-29 (170)
342 2pt5_A Shikimate kinase, SK; a 94.5 0.019 6.4E-07 55.0 3.4 23 199-221 2-24 (168)
343 3clv_A RAB5 protein, putative; 94.5 0.016 5.5E-07 56.3 3.0 23 199-221 9-31 (208)
344 1ko7_A HPR kinase/phosphatase; 94.5 0.024 8.1E-07 61.2 4.4 36 184-220 132-167 (314)
345 4dsu_A GTPase KRAS, isoform 2B 94.5 0.017 5.8E-07 55.8 3.0 23 199-221 6-28 (189)
346 2hxs_A RAB-26, RAS-related pro 94.5 0.018 6.3E-07 55.0 3.2 23 199-221 8-30 (178)
347 3pqc_A Probable GTP-binding pr 94.5 0.016 5.4E-07 56.3 2.7 23 199-221 25-47 (195)
348 3lxw_A GTPase IMAP family memb 94.5 0.017 6E-07 59.7 3.1 23 199-221 23-45 (247)
349 2cxx_A Probable GTP-binding pr 94.4 0.016 5.5E-07 56.1 2.7 22 200-221 4-25 (190)
350 1upt_A ARL1, ADP-ribosylation 94.4 0.018 6.1E-07 54.6 2.9 23 198-220 8-30 (171)
351 3be4_A Adenylate kinase; malar 94.4 0.018 6.2E-07 58.1 3.1 26 196-221 4-29 (217)
352 3bc1_A RAS-related protein RAB 94.4 0.018 6.1E-07 55.7 2.9 23 199-221 13-35 (195)
353 3t1o_A Gliding protein MGLA; G 94.4 0.019 6.5E-07 55.7 3.1 25 199-223 16-40 (198)
354 2qmh_A HPR kinase/phosphorylas 94.4 0.032 1.1E-06 56.3 4.7 36 185-221 23-58 (205)
355 2oil_A CATX-8, RAS-related pro 94.4 0.018 6.3E-07 56.1 2.9 23 199-221 27-49 (193)
356 1r8s_A ADP-ribosylation factor 94.3 0.02 6.7E-07 54.0 2.9 21 200-220 3-23 (164)
357 2y8e_A RAB-protein 6, GH09086P 94.3 0.019 6.3E-07 54.8 2.7 22 199-220 16-37 (179)
358 2orv_A Thymidine kinase; TP4A 94.3 0.19 6.5E-06 51.7 10.4 53 359-418 89-150 (234)
359 1z0f_A RAB14, member RAS oncog 94.3 0.02 7E-07 54.5 2.9 23 199-221 17-39 (179)
360 2g6b_A RAS-related protein RAB 94.2 0.02 7E-07 54.8 2.9 23 199-221 12-34 (180)
361 2a9k_A RAS-related protein RAL 94.2 0.021 7E-07 54.9 2.9 23 199-221 20-42 (187)
362 1moz_A ARL1, ADP-ribosylation 94.2 0.014 4.7E-07 56.3 1.6 23 197-219 18-40 (183)
363 1njg_A DNA polymerase III subu 94.2 0.0083 2.9E-07 59.9 0.1 24 199-222 47-70 (250)
364 3iby_A Ferrous iron transport 94.2 0.019 6.6E-07 59.9 2.9 23 199-221 3-25 (256)
365 2efe_B Small GTP-binding prote 94.2 0.022 7.4E-07 54.7 3.0 23 199-221 14-36 (181)
366 1nrj_B SR-beta, signal recogni 94.1 0.021 7.3E-07 56.9 2.9 23 199-221 14-36 (218)
367 3con_A GTPase NRAS; structural 94.1 0.022 7.6E-07 55.3 2.9 23 199-221 23-45 (190)
368 1wf3_A GTP-binding protein; GT 94.1 0.024 8.1E-07 60.7 3.4 23 199-221 9-31 (301)
369 2xb4_A Adenylate kinase; ATP-b 94.1 0.026 8.8E-07 57.4 3.4 23 199-221 2-24 (223)
370 2bme_A RAB4A, RAS-related prot 94.1 0.022 7.4E-07 55.0 2.7 23 199-221 12-34 (186)
371 1ksh_A ARF-like protein 2; sma 94.0 0.024 8.3E-07 54.8 3.0 26 196-221 17-42 (186)
372 1vg8_A RAS-related protein RAB 94.0 0.024 8.1E-07 55.8 3.0 23 199-221 10-32 (207)
373 1ypw_A Transitional endoplasmi 94.0 0.0095 3.3E-07 72.4 0.1 43 190-237 504-546 (806)
374 2bov_A RAla, RAS-related prote 94.0 0.023 8E-07 55.7 2.9 23 199-221 16-38 (206)
375 3iev_A GTP-binding protein ERA 94.0 0.025 8.6E-07 60.6 3.4 23 199-221 12-34 (308)
376 3sr0_A Adenylate kinase; phosp 94.0 0.026 9E-07 57.1 3.3 23 199-221 2-24 (206)
377 1ak2_A Adenylate kinase isoenz 94.0 0.028 9.7E-07 57.3 3.6 26 196-221 15-40 (233)
378 3cmu_A Protein RECA, recombina 94.0 0.085 2.9E-06 69.3 8.7 38 185-222 718-757 (2050)
379 2gf9_A RAS-related protein RAB 94.0 0.025 8.4E-07 55.1 2.9 23 199-221 24-46 (189)
380 2gf0_A GTP-binding protein DI- 94.0 0.023 8E-07 55.4 2.7 22 199-220 10-31 (199)
381 3tkl_A RAS-related protein RAB 93.9 0.025 8.6E-07 55.0 2.9 23 199-221 18-40 (196)
382 1uj2_A Uridine-cytidine kinase 93.9 0.027 9.3E-07 58.2 3.3 24 198-221 23-46 (252)
383 3kkq_A RAS-related protein M-R 93.9 0.026 8.9E-07 54.4 2.9 23 199-221 20-42 (183)
384 3a1s_A Iron(II) transport prot 93.9 0.027 9.1E-07 58.9 3.2 23 199-221 7-29 (258)
385 3t5d_A Septin-7; GTP-binding p 93.9 0.023 7.9E-07 59.6 2.7 23 199-221 10-32 (274)
386 1qvr_A CLPB protein; coiled co 93.9 0.084 2.9E-06 64.5 8.1 25 198-222 589-613 (854)
387 2dby_A GTP-binding protein; GD 93.9 0.024 8.1E-07 62.6 2.9 22 200-221 4-25 (368)
388 2grj_A Dephospho-COA kinase; T 93.9 0.029 1E-06 56.0 3.3 24 197-220 12-35 (192)
389 3cbq_A GTP-binding protein REM 93.9 0.022 7.4E-07 56.4 2.3 23 199-221 25-47 (195)
390 1m7b_A RND3/RHOE small GTP-bin 93.9 0.025 8.4E-07 55.0 2.7 23 199-221 9-31 (184)
391 2fg5_A RAB-22B, RAS-related pr 93.9 0.025 8.5E-07 55.4 2.7 23 199-221 25-47 (192)
392 2p65_A Hypothetical protein PF 93.9 0.024 8.2E-07 54.5 2.6 27 196-222 42-68 (187)
393 1e4v_A Adenylate kinase; trans 93.8 0.028 9.4E-07 56.5 3.1 23 199-221 2-24 (214)
394 1zbd_A Rabphilin-3A; G protein 93.8 0.028 9.7E-07 55.3 3.1 23 199-221 10-32 (203)
395 1jwy_B Dynamin A GTPase domain 93.8 0.026 8.9E-07 60.0 3.0 23 199-221 26-48 (315)
396 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.027 9.4E-07 54.1 2.9 22 199-220 7-28 (186)
397 3a8t_A Adenylate isopentenyltr 93.8 0.036 1.2E-06 60.3 4.1 26 196-221 39-64 (339)
398 3v9p_A DTMP kinase, thymidylat 93.8 0.026 8.9E-07 58.1 2.8 30 193-222 21-50 (227)
399 2xtp_A GTPase IMAP family memb 93.8 0.027 9.2E-07 58.3 2.9 23 199-221 24-46 (260)
400 3i8s_A Ferrous iron transport 93.8 0.027 9.3E-07 59.3 2.9 23 199-221 5-27 (274)
401 1ltq_A Polynucleotide kinase; 93.7 0.032 1.1E-06 58.9 3.5 22 198-219 3-24 (301)
402 1z06_A RAS-related protein RAB 93.7 0.03 1E-06 54.5 3.0 22 199-220 22-43 (189)
403 2wsm_A Hydrogenase expression/ 93.7 0.029 1E-06 56.1 3.0 24 198-221 31-54 (221)
404 3oes_A GTPase rhebl1; small GT 93.7 0.027 9.4E-07 55.5 2.7 23 199-221 26-48 (201)
405 2il1_A RAB12; G-protein, GDP, 93.7 0.029 9.9E-07 55.0 2.9 23 199-221 28-50 (192)
406 3t5g_A GTP-binding protein RHE 93.7 0.029 9.8E-07 54.0 2.7 22 199-220 8-29 (181)
407 1x3s_A RAS-related protein RAB 93.6 0.031 1E-06 54.3 2.9 23 199-221 17-39 (195)
408 3dz8_A RAS-related protein RAB 93.6 0.028 9.7E-07 54.8 2.7 23 199-221 25-47 (191)
409 2cjw_A GTP-binding protein GEM 93.6 0.031 1E-06 55.1 2.9 22 199-220 8-29 (192)
410 3bwd_D RAC-like GTP-binding pr 93.6 0.031 1.1E-06 53.5 2.9 22 199-220 10-31 (182)
411 2bcg_Y Protein YP2, GTP-bindin 93.6 0.029 9.8E-07 55.5 2.7 23 199-221 10-32 (206)
412 1zj6_A ADP-ribosylation factor 93.6 0.031 1.1E-06 54.3 2.9 22 199-220 18-39 (187)
413 1zd9_A ADP-ribosylation factor 93.6 0.031 1.1E-06 54.5 2.9 22 199-220 24-45 (188)
414 2a5j_A RAS-related protein RAB 93.6 0.032 1.1E-06 54.5 2.9 23 199-221 23-45 (191)
415 2h57_A ADP-ribosylation factor 93.6 0.025 8.7E-07 55.1 2.2 23 199-221 23-45 (190)
416 3cph_A RAS-related protein SEC 93.6 0.032 1.1E-06 55.2 2.9 24 198-221 21-44 (213)
417 2atv_A RERG, RAS-like estrogen 93.6 0.033 1.1E-06 54.6 3.0 22 199-220 30-51 (196)
418 3zvl_A Bifunctional polynucleo 93.6 0.035 1.2E-06 62.1 3.6 28 194-221 255-282 (416)
419 2o52_A RAS-related protein RAB 93.5 0.033 1.1E-06 55.1 2.9 22 199-220 27-48 (200)
420 4bas_A ADP-ribosylation factor 93.5 0.034 1.1E-06 54.3 2.9 23 199-221 19-41 (199)
421 2f6r_A COA synthase, bifunctio 93.5 0.036 1.2E-06 58.6 3.4 22 197-218 75-96 (281)
422 4edh_A DTMP kinase, thymidylat 93.5 0.042 1.4E-06 55.8 3.8 29 195-223 4-32 (213)
423 4dhe_A Probable GTP-binding pr 93.5 0.019 6.4E-07 57.5 1.1 23 199-221 31-53 (223)
424 2p5s_A RAS and EF-hand domain 93.5 0.034 1.1E-06 54.8 2.9 24 198-221 29-52 (199)
425 2qu8_A Putative nucleolar GTP- 93.5 0.034 1.2E-06 56.2 3.0 22 199-220 31-52 (228)
426 3reg_A RHO-like small GTPase; 93.5 0.034 1.2E-06 54.3 2.9 23 199-221 25-47 (194)
427 2f7s_A C25KG, RAS-related prot 93.5 0.036 1.2E-06 55.2 3.2 23 199-221 27-49 (217)
428 2h17_A ADP-ribosylation factor 93.4 0.03 1E-06 54.2 2.4 22 199-220 23-44 (181)
429 2r62_A Cell division protease 93.4 0.013 4.6E-07 60.7 -0.1 33 187-221 36-68 (268)
430 1sxj_D Activator 1 41 kDa subu 93.4 0.016 5.5E-07 62.4 0.4 41 360-403 133-173 (353)
431 2vhj_A Ntpase P4, P4; non- hyd 93.4 0.041 1.4E-06 59.5 3.6 34 187-220 113-146 (331)
432 2aka_B Dynamin-1; fusion prote 93.4 0.032 1.1E-06 58.7 2.7 23 199-221 28-50 (299)
433 3llu_A RAS-related GTP-binding 93.3 0.038 1.3E-06 54.3 3.0 25 199-223 22-46 (196)
434 2ew1_A RAS-related protein RAB 93.3 0.035 1.2E-06 55.3 2.7 23 199-221 28-50 (201)
435 2iwr_A Centaurin gamma 1; ANK 93.3 0.029 1E-06 53.7 2.1 22 199-220 9-30 (178)
436 2fv8_A H6, RHO-related GTP-bin 93.3 0.036 1.2E-06 55.0 2.7 23 199-221 27-49 (207)
437 2h92_A Cytidylate kinase; ross 93.3 0.033 1.1E-06 55.9 2.5 25 197-221 3-27 (219)
438 2q3h_A RAS homolog gene family 93.2 0.041 1.4E-06 54.0 3.1 24 198-221 21-44 (201)
439 1p5z_B DCK, deoxycytidine kina 93.2 0.031 1.1E-06 58.1 2.3 27 195-221 22-48 (263)
440 3c5c_A RAS-like protein 12; GD 93.2 0.041 1.4E-06 53.7 3.0 23 199-221 23-45 (187)
441 2fu5_C RAS-related protein RAB 93.2 0.027 9.2E-07 54.3 1.7 22 199-220 10-31 (183)
442 1a7j_A Phosphoribulokinase; tr 93.1 0.024 8.1E-07 60.4 1.3 26 196-221 4-29 (290)
443 1gwn_A RHO-related GTP-binding 93.1 0.038 1.3E-06 55.1 2.7 23 199-221 30-52 (205)
444 2b6h_A ADP-ribosylation factor 93.1 0.038 1.3E-06 54.3 2.6 23 198-220 30-52 (192)
445 2j1l_A RHO-related GTP-binding 93.1 0.042 1.4E-06 55.0 2.9 22 199-220 36-57 (214)
446 2fh5_B SR-beta, signal recogni 93.1 0.042 1.4E-06 54.6 2.9 23 199-221 9-31 (214)
447 3crm_A TRNA delta(2)-isopenten 93.1 0.042 1.5E-06 59.4 3.1 25 198-222 6-30 (323)
448 3d3q_A TRNA delta(2)-isopenten 93.0 0.04 1.4E-06 60.0 2.9 25 198-222 8-32 (340)
449 2gco_A H9, RHO-related GTP-bin 93.0 0.041 1.4E-06 54.3 2.7 23 199-221 27-49 (201)
450 3lv8_A DTMP kinase, thymidylat 92.9 0.05 1.7E-06 56.2 3.3 28 196-223 26-53 (236)
451 3tmk_A Thymidylate kinase; pho 92.9 0.043 1.5E-06 56.0 2.7 29 195-223 3-31 (216)
452 3tqf_A HPR(Ser) kinase; transf 92.9 0.079 2.7E-06 52.2 4.4 33 186-219 6-38 (181)
453 3exa_A TRNA delta(2)-isopenten 92.9 0.061 2.1E-06 58.0 3.9 25 197-221 3-27 (322)
454 2orw_A Thymidine kinase; TMTK, 92.8 0.056 1.9E-06 53.5 3.3 53 360-418 76-137 (184)
455 2ocp_A DGK, deoxyguanosine kin 92.8 0.058 2E-06 55.2 3.6 27 196-222 1-27 (241)
456 3syl_A Protein CBBX; photosynt 92.8 0.054 1.9E-06 57.2 3.4 28 195-222 65-92 (309)
457 2atx_A Small GTP binding prote 92.7 0.049 1.7E-06 53.1 2.7 22 199-220 20-41 (194)
458 3t15_A Ribulose bisphosphate c 92.7 0.047 1.6E-06 58.0 2.8 27 195-221 34-60 (293)
459 2g3y_A GTP-binding protein GEM 92.6 0.058 2E-06 54.5 3.2 23 199-221 39-61 (211)
460 3cnl_A YLQF, putative uncharac 92.6 0.061 2.1E-06 56.4 3.5 25 198-222 100-124 (262)
461 4djt_A GTP-binding nuclear pro 92.6 0.027 9.3E-07 56.2 0.7 22 199-220 13-34 (218)
462 3def_A T7I23.11 protein; chlor 92.6 0.053 1.8E-06 56.4 2.9 23 199-221 38-60 (262)
463 4tmk_A Protein (thymidylate ki 92.5 0.063 2.2E-06 54.5 3.4 28 196-223 2-29 (213)
464 3n70_A Transport activator; si 92.5 0.055 1.9E-06 51.0 2.7 26 196-221 23-48 (145)
465 2x77_A ADP-ribosylation factor 92.5 0.039 1.3E-06 53.6 1.6 21 199-219 24-44 (189)
466 2hup_A RAS-related protein RAB 92.5 0.054 1.8E-06 53.6 2.7 22 199-220 31-52 (201)
467 3cpj_B GTP-binding protein YPT 92.4 0.058 2E-06 54.2 3.0 23 199-221 15-37 (223)
468 2hf9_A Probable hydrogenase ni 92.4 0.058 2E-06 54.1 2.9 24 198-221 39-62 (226)
469 1h65_A Chloroplast outer envel 92.4 0.056 1.9E-06 56.5 2.9 23 199-221 41-63 (270)
470 3ld9_A DTMP kinase, thymidylat 92.4 0.075 2.6E-06 54.4 3.7 27 196-222 20-46 (223)
471 2yc2_C IFT27, small RAB-relate 92.4 0.028 9.6E-07 55.1 0.5 22 199-220 22-43 (208)
472 2chg_A Replication factor C sm 92.2 0.067 2.3E-06 52.5 3.1 23 199-221 40-62 (226)
473 3eie_A Vacuolar protein sortin 92.2 0.07 2.4E-06 57.3 3.4 27 195-221 49-75 (322)
474 1d2n_A N-ethylmaleimide-sensit 92.2 0.07 2.4E-06 55.6 3.3 27 195-221 62-88 (272)
475 1sky_E F1-ATPase, F1-ATP synth 92.2 0.078 2.7E-06 60.1 3.8 38 184-222 139-176 (473)
476 4gzl_A RAS-related C3 botulinu 92.1 0.063 2.1E-06 53.2 2.7 23 198-220 31-53 (204)
477 3gmt_A Adenylate kinase; ssgci 92.1 0.071 2.4E-06 54.9 3.1 24 198-221 9-32 (230)
478 1tue_A Replication protein E1; 92.1 0.05 1.7E-06 55.1 1.9 28 194-221 55-82 (212)
479 3uk6_A RUVB-like 2; hexameric 92.1 0.072 2.5E-06 57.7 3.3 29 195-223 68-96 (368)
480 4b4t_M 26S protease regulatory 92.0 0.068 2.3E-06 60.2 3.1 29 194-222 212-240 (434)
481 2j0v_A RAC-like GTP-binding pr 92.0 0.065 2.2E-06 53.1 2.7 23 199-221 11-33 (212)
482 4dcu_A GTP-binding protein ENG 92.0 0.063 2.2E-06 60.7 2.9 22 199-220 25-46 (456)
483 3foz_A TRNA delta(2)-isopenten 92.0 0.088 3E-06 56.6 3.8 25 197-221 10-34 (316)
484 3q3j_B RHO-related GTP-binding 91.9 0.072 2.5E-06 53.3 2.9 22 199-220 29-50 (214)
485 4b4t_L 26S protease subunit RP 91.9 0.072 2.5E-06 60.0 3.1 29 194-222 212-240 (437)
486 3p32_A Probable GTPase RV1496/ 91.7 0.091 3.1E-06 57.4 3.6 26 197-222 79-104 (355)
487 1ofh_A ATP-dependent HSL prote 91.6 0.081 2.8E-06 55.6 3.0 26 197-222 50-75 (310)
488 2qgz_A Helicase loader, putati 91.5 0.099 3.4E-06 56.0 3.6 27 196-222 151-177 (308)
489 3r7w_A Gtpase1, GTP-binding pr 91.4 0.11 3.7E-06 55.5 3.8 25 197-221 3-27 (307)
490 3dm5_A SRP54, signal recogniti 91.4 0.093 3.2E-06 59.2 3.3 28 196-223 99-126 (443)
491 3eph_A TRNA isopentenyltransfe 91.4 0.1 3.4E-06 58.2 3.5 25 197-221 2-26 (409)
492 3pvs_A Replication-associated 91.3 0.031 1.1E-06 63.3 -0.6 31 192-222 43-75 (447)
493 3hws_A ATP-dependent CLP prote 91.2 0.093 3.2E-06 57.2 3.0 26 196-221 50-75 (363)
494 2x2e_A Dynamin-1; nitration, h 91.1 0.07 2.4E-06 58.2 1.9 23 199-221 33-55 (353)
495 1puj_A YLQF, conserved hypothe 91.1 0.12 4.2E-06 54.7 3.7 26 197-222 120-145 (282)
496 2qby_B CDC6 homolog 3, cell di 91.1 0.11 3.7E-06 56.5 3.4 26 196-221 44-69 (384)
497 1wxq_A GTP-binding protein; st 91.1 0.094 3.2E-06 58.4 2.9 41 317-366 181-221 (397)
498 2qp9_X Vacuolar protein sortin 91.0 0.093 3.2E-06 57.3 2.8 27 195-221 82-108 (355)
499 2hjg_A GTP-binding protein ENG 90.9 0.1 3.4E-06 58.7 3.0 23 199-221 5-27 (436)
500 2r44_A Uncharacterized protein 90.8 0.027 9.3E-07 60.4 -1.7 27 196-222 45-71 (331)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.3e-44 Score=399.63 Aligned_cols=222 Identities=24% Similarity=0.318 Sum_probs=188.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC------CceEEEEecCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLH 256 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~------~~~i~yv~Q~d~~ 256 (824)
..++|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 356999999999999999999999999999999999999997 9999999999875432 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.|+.+..+... . +....++++|+.+||.+.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------~------------------------~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------D------------------------EVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCChh
Confidence 999999999999876543211 0 011246778999999988887776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
.|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++.|.|+|+++| ...++.++||+|++
T Consensus 163 -----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH-dl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 -----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAV 236 (366)
T ss_dssp -----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEE
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec-CHHHHHHhCCEEEE
Confidence 499999999999999999999999999999999999999999999998777899998765 45678899999999
Q ss_pred EcCCeEEEecChhhHHHHHHHcCCCCCCCCCHHHHHHHh
Q 003389 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (824)
Q Consensus 417 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~adfl~~v 455 (824)
|++|++++.|+++++. ..|.......|+...
T Consensus 237 l~~G~iv~~g~~~ev~--------~~p~~~~~~~~~~~~ 267 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF--------SHPKTPLAQKFIQST 267 (366)
T ss_dssp EETTEEEECCBHHHHH--------SSCCSHHHHHHHHHH
T ss_pred EECCEEEEEcCHHHHH--------hCCCcHHHHHHHhhc
Confidence 9999999999999874 234443445555543
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.6e-45 Score=402.22 Aligned_cols=207 Identities=22% Similarity=0.338 Sum_probs=180.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc----CCCCC-CceEEEEecCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL----NEFVP-QRTCAYISQHDLHH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~----~~~~~-~~~i~yv~Q~d~~~ 257 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++ ....+ ++.+|||+|+..++
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 457999999999999999999999999999999999999997 99999999987 22222 46799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
|.+||+||+.|+.+.++... .+ ....++++|+.+||++..|..+++
T Consensus 93 p~ltV~eni~~~l~~~~~~~--------------------~~--------------~~~~v~~~l~~~gL~~~~~r~~~~ 138 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNGKGRT--------------------AQ--------------ERQRIEAMLELTGISELAGRYPHE 138 (359)
T ss_dssp TTSCHHHHHHTTSTTSSCCS--------------------HH--------------HHHHHHHHHHHHTCGGGTTSCGGG
T ss_pred CCCCHHHHHHHHHHHcCCCh--------------------HH--------------HHHHHHHHHHHcCCchHhcCChhh
Confidence 99999999999876543211 00 112467789999999988887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++| ...++..+||+|++|
T Consensus 139 -----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTH-d~~ea~~~aDri~vl 212 (359)
T 3fvq_A 139 -----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSH-DREEALQYADRIAVM 212 (359)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECC-CHHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHHCCEEEEE
Confidence 99999999999999999999999999999999999999999999887777889888764 566899999999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|+++..|+++++.
T Consensus 213 ~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 213 KQGRILQTASPHELY 227 (359)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEEeCHHHHH
Confidence 999999999999874
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.5e-45 Score=403.39 Aligned_cols=207 Identities=25% Similarity=0.363 Sum_probs=182.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
+..+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.+|||+|+..++|.+|
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~lt 91 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSC
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCC
Confidence 457999999999999999999999999999999999999997 9999999999876544 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++... . +...+++++++.+||++..+..+.+
T Consensus 92 V~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~p~~---- 133 (381)
T 3rlf_A 92 VAENMSFGLKLAGAKK----------E------------------------VINQRVNQVAEVLQLAHLLDRKPKA---- 133 (381)
T ss_dssp HHHHHTHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTCCGGG----
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCChhH----
Confidence 9999999876543211 0 0112467789999999988877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|.|+|+++ |...++..+||+|++|++|+
T Consensus 134 -LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vT-Hd~~ea~~~aDri~vl~~G~ 211 (381)
T 3rlf_A 134 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT-HDQVEAMTLADKIVVLDAGR 211 (381)
T ss_dssp -SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEC-SCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEE-CCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999876688988875 55678999999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (381)
T 3rlf_A 212 VAQVGKPLELY 222 (381)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEeCHHHHH
Confidence 99999999875
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4e-44 Score=383.57 Aligned_cols=207 Identities=27% Similarity=0.348 Sum_probs=175.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC-----CCCceEEEEecCC-CCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHD-LHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~-----~~~~~i~yv~Q~d-~~~ 257 (824)
..+|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 45999999999999999999999999999999999999997 99999999988421 1236799999986 345
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+||+.|+....+... . +....++++|+.+||++..+..+++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLPE----------D------------------------EIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred ccCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhcCCccc
Confidence 57899999999865443210 0 0112456789999999888887764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++..|.|+|+++|+. .++.++||+|++|
T Consensus 144 -----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l 217 (275)
T 3gfo_A 144 -----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVM 217 (275)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999733488999887654 5788899999999
Q ss_pred cCCeEEEecChhhHHH
Q 003389 418 SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (824)
++|++++.|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999988753
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.9e-44 Score=395.53 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=180.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++.+|
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 456999999999999999999999999999999999999997 9999999998865433 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++... .+ ....++++++.+||++..+..+++
T Consensus 104 v~eni~~~l~~~~~~~----------~~------------------------~~~~v~~~l~~~gL~~~~~r~~~~---- 145 (355)
T 1z47_A 104 VYDNVSFGLREKRVPK----------DE------------------------MDARVRELLRFMRLESYANRFPHE---- 145 (355)
T ss_dssp HHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCCccc----
Confidence 9999999865433210 00 112467789999999988877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++| ...++..+||+|++|++|+
T Consensus 146 -LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTH-d~~~a~~~adri~vl~~G~ 223 (355)
T 1z47_A 146 -LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTH-DQEEALEVADRVLVLHEGN 223 (355)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECS-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECC-CHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998766889888765 5568889999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 224 i~~~g~~~~l~ 234 (355)
T 1z47_A 224 VEQFGTPEEVY 234 (355)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999998874
No 6
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.5e-44 Score=395.17 Aligned_cols=207 Identities=29% Similarity=0.373 Sum_probs=181.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSC
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCC
Confidence 356999999999999999999999999999999999999997 9999999999865433 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++.. +.+ ....++++++.+||++..+..+++
T Consensus 92 v~eni~~~~~~~~~~----------~~~------------------------~~~~v~~~l~~~~L~~~~~r~~~~---- 133 (359)
T 2yyz_A 92 VFENIAFPLRARRIS----------KDE------------------------VEKRVVEIARKLLIDNLLDRKPTQ---- 133 (359)
T ss_dssp HHHHHHGGGSSSCSH----------HHH------------------------TTHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred HHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCCchHhcCChhh----
Confidence 999999986544321 000 112467789999999988887764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|+
T Consensus 134 -LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~G~ 211 (359)
T 2yyz_A 134 -LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD-QAEAMTMASRIAVFNQGK 211 (359)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668898887654 568889999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 212 i~~~g~~~~l~ 222 (359)
T 2yyz_A 212 LVQYGTPDEVY 222 (359)
T ss_dssp EEEEECHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999999875
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.7e-44 Score=374.33 Aligned_cols=207 Identities=20% Similarity=0.229 Sum_probs=172.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999999997 9999999998865432 2359999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-cccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMV 335 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~v 335 (824)
++.+||+||+.++......+.. .+. +....+.++++.+||.+.. +..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------SGE------------------------ERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------CHH------------------------HHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------CHH------------------------HHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999997643311000 000 0112356688999998753 6666
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+ .|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++++..|.|+|+++|+.. +.++||+|+
T Consensus 144 ~-----~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~ 216 (235)
T 3tif_A 144 N-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERII 216 (235)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEE
T ss_pred h-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEE
Confidence 5 499999999999999999999999999999999999999999999998755889999887653 458999999
Q ss_pred EEcCCeEEEecChhhH
Q 003389 416 LLSEGQIVYQGPRDNV 431 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (824)
+|++|+++..++.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.2e-43 Score=373.54 Aligned_cols=205 Identities=26% Similarity=0.356 Sum_probs=177.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|||++|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence 356999999999999999999999999999999999999997 9999999999876433 3569999999988889
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.++....... +....++++++.+||.+..+..+++
T Consensus 100 ~tv~e~l~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (266)
T 4g1u_C 100 FSVSEVIQMGRAPYGGS------------------------------------QDRQALQQVMAQTDCLALAQRDYRV-- 141 (266)
T ss_dssp CBHHHHHHGGGTTSCST------------------------------------THHHHHHHHHHHTTCSTTTTSBGGG--
T ss_pred CCHHHHHHhhhhhcCcH------------------------------------HHHHHHHHHHHHcCChhHhcCCccc--
Confidence 99999999975432110 0112356789999999888887764
Q ss_pred CCCCCHHHHHHHHHHHHHHc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 340 RRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
|||||||||+|||||+. +|++|||||||+|||+.++.++++.|++++++.+.|+|+++ |...++.++||+
T Consensus 142 ---LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt-Hdl~~~~~~~d~ 217 (266)
T 4g1u_C 142 ---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL-HDLNLAALYADR 217 (266)
T ss_dssp ---CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC-SCHHHHHHHCSE
T ss_pred ---CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE-cCHHHHHHhCCE
Confidence 99999999999999999 99999999999999999999999999999876567888765 456678889999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
|++|++|++++.|+++++.
T Consensus 218 v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 218 IMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEEETTEEEEEECHHHHC
T ss_pred EEEEECCEEEEEcCHHHHh
Confidence 9999999999999998863
No 9
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.3e-43 Score=390.97 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=185.1
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999997 9999999998865433 467999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.|+.+.++.. . . ..++++++.+||++..+..+++ ||
T Consensus 92 nl~~~~~~~~~~--------------------~----------------~-~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIK--------------------D----------------P-KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCC--------------------C----------------H-HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCC--------------------H----------------H-HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 999975433210 0 0 2356789999999988887764 99
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd-~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987678899887654 568889999999999999999
Q ss_pred ecChhhHHHHHHHcCCCCCCCCCHHHHHH
Q 003389 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (824)
Q Consensus 425 ~G~~~~~~~~f~~~G~~~p~~~~~adfl~ 453 (824)
.|+++++. ..|....+++|+-
T Consensus 209 ~g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 209 VGKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp EECHHHHH--------SSCCTTHHHHHHC
T ss_pred ECCHHHHH--------hCcccHHHHHhcC
Confidence 99998873 3455555666653
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.5e-43 Score=368.47 Aligned_cols=200 Identities=23% Similarity=0.314 Sum_probs=171.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-------CceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-------~~~i~yv~Q~d~~ 256 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 56999999999999999999999999999999999999987 9999999998865321 1569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+||+.++....+... .+ ....++++++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------KE------------------------AKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchhhhCChh
Confidence 999999999998754332110 00 01235678999999988887776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|+++|+. .++ ++||++++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEE
Confidence 4 9999999999999999999999999999999999999999999999875 88999987764 345 89999999
Q ss_pred EcCCeEEEecCh
Q 003389 417 LSEGQIVYQGPR 428 (824)
Q Consensus 417 L~~G~iv~~G~~ 428 (824)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-43 Score=391.42 Aligned_cols=207 Identities=28% Similarity=0.392 Sum_probs=180.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lT 261 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSC
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCC
Confidence 356999999999999999999999999999999999999997 9999999999865433 467999999999999999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.|+.+.++... .+ ....++++++.+||++..+..+++
T Consensus 92 v~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~r~~~~---- 133 (362)
T 2it1_A 92 VYKNIAFPLELRKAPR----------EE------------------------IDKKVREVAKMLHIDKLLNRYPWQ---- 133 (362)
T ss_dssp HHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHTTCTTCTTCCGGG----
T ss_pred HHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchHhhCChhh----
Confidence 9999999865433210 00 112467789999999988877764
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|+
T Consensus 134 -LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~ 211 (362)
T 2it1_A 134 -LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD-QAEALAMADRIAVIREGE 211 (362)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987668898887654 568889999999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
++..|+++++.
T Consensus 212 i~~~g~~~~~~ 222 (362)
T 2it1_A 212 ILQVGTPDEVY 222 (362)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEcCHHHHH
Confidence 99999999875
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-43 Score=394.90 Aligned_cols=207 Identities=28% Similarity=0.370 Sum_probs=180.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC------CCC-CceEEEEecCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------FVP-QRTCAYISQHDL 255 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~------~~~-~~~i~yv~Q~d~ 255 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (372)
T 1g29_1 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (372)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCc
Confidence 356999999999999999999999999999999999999997 9999999998754 322 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
+++++||+||+.|+.+.++... .+ ....++++++.+||++..+..+
T Consensus 92 l~~~ltv~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~r~~ 137 (372)
T 1g29_1 92 LYPHMTVYDNIAFPLKLRKVPR----------QE------------------------IDQRVREVAELLGLTELLNRKP 137 (372)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCH----------HH------------------------HHHHHHHHHHHHTCGGGTTCCG
T ss_pred cCCCCCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCchHhcCCc
Confidence 9999999999999865443210 00 1124577899999999888877
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|+
T Consensus 138 ~~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~ 211 (372)
T 1g29_1 138 RE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIA 211 (372)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEE
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC-HHHHHHhCCEEE
Confidence 64 999999999999999999999999999999999999999999999987668899887654 568889999999
Q ss_pred EEcCCeEEEecChhhHH
Q 003389 416 LLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (824)
+|++|+++..|+++++.
T Consensus 212 vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 212 VMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEeCCEEEEeCCHHHHH
Confidence 99999999999999875
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.1e-43 Score=374.44 Aligned_cols=205 Identities=20% Similarity=0.320 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC--CCC---CCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~--~~~---~~~~i~yv~Q~d~~~~ 258 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999987 999999999874 111 1356999999999999
Q ss_pred CCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 259 EMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 259 ~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
.+||+||+.|+. ...+... .+ ....++++++.+||.+..+..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPR----------EK------------------------AEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999864 3222110 00 012356789999999888877764
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++. |.|+|+++|+ ..++.++||++++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHE-MGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999765 8888887654 55778899999999
Q ss_pred cCCeEEEecChhhHH
Q 003389 418 SEGQIVYQGPRDNVL 432 (824)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (824)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998774
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-43 Score=376.45 Aligned_cols=205 Identities=23% Similarity=0.300 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC----------CC------CCceE
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FV------PQRTC 247 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~----------~~------~~~~i 247 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 56999999999999999999999999999999999999987 9999999998751 11 13569
Q ss_pred EEEecCCCCCCCCCHHHHHHHhh-hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC
Q 003389 248 AYISQHDLHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (824)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~L~f~a-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 326 (824)
+||+|++.+++.+||+||+.++. ...+... .+ ....++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----------HD------------------------ARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCCH----------HH------------------------HHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCCH----------HH------------------------HHHHHHHHHHHcC
Confidence 99999999999999999999864 2222110 00 0123567899999
Q ss_pred CCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 327 LDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 327 L~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
|.+. .+..+++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. |.|+|+++|+ ..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd-~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HH
Confidence 9988 8877764 9999999999999999999999999999999999999999999999865 8888887654 55
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhhHH
Q 003389 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 406 e~~~lfD~iilL~~G~iv~~G~~~~~~ 432 (824)
++.++||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 778899999999999999999998774
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.1e-43 Score=392.55 Aligned_cols=204 Identities=23% Similarity=0.319 Sum_probs=178.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC-----CC-CCceEEEEecCCCCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FV-PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~-----~~-~~~~i~yv~Q~d~~~~~ 259 (824)
+|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999997 9999999998754 22 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+||+||+.|+.+.++... .+ ....++++++.+||++..+..+++
T Consensus 97 ltv~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------EE------------------------IRKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCCchHhcCChhh--
Confidence 999999999865443210 00 112457789999999988887764
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999987668899887654 5688899999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.1e-43 Score=394.41 Aligned_cols=206 Identities=24% Similarity=0.357 Sum_probs=173.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC-CceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~-~~~i~yv~Q~d~~~~~lTV 262 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 56999999999999999999999999999999999999997 9999999999865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.+.++... .+ ....++++++.+||.+..+..++ .
T Consensus 101 ~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~L~~~~~r~~~-----~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------DE------------------------IDKRVRWAAELLQIEELLNRYPA-----Q 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------HH------------------------HHHHHHHHHHHTTCGGGTTSCTT-----T
T ss_pred HHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhcCChh-----h
Confidence 999999865433210 00 11246778999999988887776 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|.|+|+++|+ ..++..+||+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd-~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987668898887654 5688899999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999999875
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.7e-43 Score=379.63 Aligned_cols=257 Identities=22% Similarity=0.330 Sum_probs=192.1
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.+.....++|+.++++.+++ ..+.........+...++++|+++.+
T Consensus 18 ~~~~~~~~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~vs~~y----------------------------- 63 (306)
T 3nh6_A 18 GSHMFIDMENMFDLLKEETE-----VKDLPGAGPLRFQKGRIEFENVHFSY----------------------------- 63 (306)
T ss_dssp -CCTTCCHHHHHHHHHHHHS-----CCCCTTCBCCCCSSCCEEEEEEEEES-----------------------------
T ss_pred HHHHHHHHHHHHHHHhCCcc-----ccccccccccCCCCCeEEEEEEEEEc-----------------------------
Confidence 34455567788887775544 11111112223334568888887652
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+.+++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|+
T Consensus 64 ----~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 64 ----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQD 136 (306)
T ss_dssp ----STTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSS
T ss_pred ----CCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecC
Confidence 12346999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .||+|||.|+..... .++..+++...+. ...++ .++...+|
T Consensus 137 ~~lf~-~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~~l------~~~i~--~lp~gl~t 182 (306)
T 3nh6_A 137 TVLFN-DTIADNIRYGRVTAG-------------------------NDEVEAAAQAAGI------HDAIM--AFPEGYRT 182 (306)
T ss_dssp CCCCS-EEHHHHHHTTSTTCC-------------------------HHHHHHHHHHHTC------HHHHH--HSTTGGGC
T ss_pred CccCc-ccHHHHHHhhcccCC-------------------------HHHHHHHHHHhCc------HHHHH--hccchhhh
Confidence 88774 699999998642111 0111111111111 11122 34456778
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..|||||||||+|||||+.+|++|||||||+|||+.++..|++.|+++.+ ++|+|++.|+. ..+. .||+
T Consensus 183 ~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~-~aD~ 257 (306)
T 3nh6_A 183 QVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVV-NADQ 257 (306)
T ss_dssp EEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHH-TCSE
T ss_pred HhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHH-cCCE
Confidence 8874 4567999999999999999999999999999999999999999999999864 67888876654 3454 5999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+|++.|+++++..
T Consensus 258 i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 258 ILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.9e-43 Score=373.76 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=174.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865321 3469999999989999
Q ss_pred CCHHHHHHHhhhh--cCCchhhHHHHHhHHHHHhcCC-CCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 260 MTVRETLDFSGRC--LGVGTRYELLAELSRREKQAGI-KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 260 lTV~E~L~f~a~~--~~~~~~~~~~~~~~~~e~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+||+||+.++... .+. .....+ ... .+.. +....++++++.+||++..++.++
T Consensus 97 ~tv~enl~~~~~~~~~~~------~~~~~~----~~~~~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 152 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP------LNSLFY----KKWIPKEE--------------EMVEKAFKILEFLKLSHLYDRKAG 152 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH------HHHHHH----CSSCCCCH--------------HHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CcHHHHHHHHHhhhccCc------cccccc----ccccCCHH--------------HHHHHHHHHHHHcCCchhhCCCch
Confidence 9999999987532 110 000000 000 0000 011235678999999988888776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++. |.|+|+++|+. .++.++||+|++
T Consensus 153 ~-----LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~ 225 (257)
T 1g6h_A 153 E-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYV 225 (257)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEE
Confidence 4 9999999999999999999999999999999999999999999999764 88998887654 477889999999
Q ss_pred EcCCeEEEecChhh
Q 003389 417 LSEGQIVYQGPRDN 430 (824)
Q Consensus 417 L~~G~iv~~G~~~~ 430 (824)
|++|++++.|++++
T Consensus 226 l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MFNGQIIAEGRGEE 239 (257)
T ss_dssp EETTEEEEEEESHH
T ss_pred EECCEEEEEeCHHH
Confidence 99999999999887
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.5e-43 Score=370.20 Aligned_cols=207 Identities=25% Similarity=0.310 Sum_probs=176.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 260 (824)
++++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++.+
T Consensus 27 ~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 356999999999999999999999999999999999999987 999999999875421 135799999999999999
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.+.....+... .+ ....++++++.+||++..++.+++
T Consensus 104 tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~--- 146 (256)
T 1vpl_A 104 QGIEYLRFVAGFYASSS----------SE------------------------IEEMVERATEIAGLGEKIKDRVST--- 146 (256)
T ss_dssp BHHHHHHHHHHHHCCCH----------HH------------------------HHHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred cHHHHHHHHHHHcCCCh----------HH------------------------HHHHHHHHHHHCCCchHhcCChhh---
Confidence 99999998654322110 00 012356789999999888887764
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|.|+|+++|+ ..++..+||++++|++|
T Consensus 147 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd-~~~~~~~~d~v~~l~~G 222 (256)
T 1vpl_A 147 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHN-MLEVEFLCDRIALIHNG 222 (256)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECC-HHHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCC-HHHHHHHCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999976 48899888765 45677889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 223 ~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 223 TIVETGTVEELKE 235 (256)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999988754
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-43 Score=366.20 Aligned_cols=204 Identities=23% Similarity=0.343 Sum_probs=172.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999987 9999999998865332 2459999999999999
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcC-CCccccccccCc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~ 338 (824)
+||+||+.++.... .. ..+ ....++.+++.++ |.+..++.++
T Consensus 96 ltv~enl~~~~~~~-~~--------------------~~~--------------~~~~~~~~l~~~~~l~~~~~~~~~-- 138 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD--------------------KEG--------------IKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTC-CC--------------------SSH--------------HHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CcHHHHHHHhhhcC-CC--------------------HHH--------------HHHHHHHHHHHcccHhhHhcCChh--
Confidence 99999999863211 00 000 0113456788884 8877777665
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+|+++|+ ..++.++||++++|+
T Consensus 139 ---~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd-~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQN-ALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESC-HHHHHHHCSEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEEEE
Confidence 4999999999999999999999999999999999999999999999976 58899888765 456788999999999
Q ss_pred CCeEEEecChhhHH
Q 003389 419 EGQIVYQGPRDNVL 432 (824)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (824)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988764
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-42 Score=365.90 Aligned_cols=201 Identities=22% Similarity=0.327 Sum_probs=173.6
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
+|+|||++|++ ++++|+||||||||||||+|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 59999999999 999999999999999999999999987 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.|+...++. ... ...++++++.+||.+..+..+++ ||
T Consensus 90 nl~~~~~~~~~----------~~~--------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VER--------------------------DRRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----------HHH--------------------------HHHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----------chH--------------------------HHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99987543210 000 11356688999999888877764 99
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++.|.|+|+++|+ ..++.++||++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976557888888765 457888999999999999999
Q ss_pred ecChhhHH
Q 003389 425 QGPRDNVL 432 (824)
Q Consensus 425 ~G~~~~~~ 432 (824)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-42 Score=366.55 Aligned_cols=205 Identities=23% Similarity=0.373 Sum_probs=173.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC-CCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d-~~~~~lTV 262 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999987 999999999875322246799999985 56778999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccccCccC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMR 340 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~ 340 (824)
+||+.|+.... .. .. +....++++++.+||. +..++.++
T Consensus 97 ~enl~~~~~~~-~~--------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~~---- 137 (266)
T 2yz2_A 97 FDEVAFAVKNF-YP--------------------DR--------------DPVPLVKKAMEFVGLDFDSFKDRVPF---- 137 (266)
T ss_dssp HHHHHHTTTTT-CT--------------------TS--------------CSHHHHHHHHHHTTCCHHHHTTCCGG----
T ss_pred HHHHHHHHHhc-CC--------------------HH--------------HHHHHHHHHHHHcCcCCcccccCChh----
Confidence 99999864321 10 00 0112356789999998 88887776
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. |.|+|+++|++ .++..+||++++|++|
T Consensus 138 -~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 138 -FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKG 214 (266)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 49999999999999999999999999999999999999999999999765 88999887665 4677889999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.2e-41 Score=359.81 Aligned_cols=208 Identities=26% Similarity=0.331 Sum_probs=169.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC--CCC---CCceEEEEecCCCCC-
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFV---PQRTCAYISQHDLHH- 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~--~~~---~~~~i~yv~Q~d~~~- 257 (824)
+++|+|||++|++||+++|+||||||||||||+|+|+++|+ +|+|.++|+++. ... .++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999997 999999999875 322 135799999986532
Q ss_pred -CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 258 -GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 258 -~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
+.+||+||+.++..... + ... .+..+ ....++++++.+||++..++.++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~----~~~-----------~~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G----VYQ-----------DIDDE--------------IRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CCHH--------------HHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c----ccc-----------CCcHH--------------HHHHHHHHHHHcCChhHhcCChh
Confidence 45799999998632100 0 000 00000 01235678999999988888776
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEEEccCchhHHhhcCeE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM--IVALLQPAPETYDLFDDI 414 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv--Iisi~q~~~e~~~lfD~i 414 (824)
+ |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++. |+|+ |+++|+ ..++.++||+|
T Consensus 161 ~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd-~~~~~~~~d~v 233 (279)
T 2ihy_A 161 Y-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHF-IEEITANFSKI 233 (279)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESC-GGGCCTTCCEE
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecC-HHHHHHhCCEE
Confidence 4 9999999999999999999999999999999999999999999999875 7888 887665 45777899999
Q ss_pred EEEcCCeEEEecChhhH
Q 003389 415 ILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~ 431 (824)
++|++|++++.|+++++
T Consensus 234 ~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEECCHHHH
Confidence 99999999999998776
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=8.3e-41 Score=352.85 Aligned_cols=201 Identities=25% Similarity=0.423 Sum_probs=162.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 356999999999999999999999999999999999999987 9999999998865432 357999999988776
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc-------c
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-------D 332 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-------d 332 (824)
+||+||+.|+.. ... .+ .++.+++.+++.+.. +
T Consensus 97 ~tv~enl~~~~~--~~~-----------------------~~---------------~~~~~l~~~~l~~~~~~~~~gl~ 136 (247)
T 2ff7_A 97 RSIIDNISLANP--GMS-----------------------VE---------------KVIYAAKLAGAHDFISELREGYN 136 (247)
T ss_dssp SBHHHHHTTTCT--TCC-----------------------HH---------------HHHHHHHHHTCHHHHHTSTTGGG
T ss_pred ccHHHHHhccCC--CCC-----------------------HH---------------HHHHHHHHhChHHHHHhCcchhh
Confidence 699999987521 000 00 122334444444332 2
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.++ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .++|+|++.|++. .+ +.||
T Consensus 137 ~~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d 211 (247)
T 2ff7_A 137 TIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNAD 211 (247)
T ss_dssp CBCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSS
T ss_pred hhhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCC
Confidence 3333 2356799999999999999999999999999999999999999999999994 3889999877654 44 4699
Q ss_pred eEEEEcCCeEEEecChhhHH
Q 003389 413 DIILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (824)
++++|++|++++.|+++++.
T Consensus 212 ~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 212 RIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
No 25
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-41 Score=354.04 Aligned_cols=203 Identities=24% Similarity=0.327 Sum_probs=167.2
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~ 259 (824)
++++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~- 89 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA- 89 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-
Confidence 456999999999999999999999999999999999999987 999999999876432 2467999999988776
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc---
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG--- 336 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg--- 336 (824)
.||+||+.|+... ... ...++.+++.+++.+..+..+.
T Consensus 90 ~tv~enl~~~~~~-~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~ 130 (243)
T 1mv5_A 90 GTIRENLTYGLEG-DYT--------------------------------------DEDLWQVLDLAFARSFVENMPDQLN 130 (243)
T ss_dssp EEHHHHTTSCTTS-CSC--------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGG
T ss_pred ccHHHHHhhhccC-CCC--------------------------------------HHHHHHHHHHhChHHHHHhCccchh
Confidence 5999999875211 000 0113446777787766554321
Q ss_pred ---CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 337 ---DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 337 ---~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
++.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++. .++|+|++.|++. .+ ..||+
T Consensus 131 ~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~-~~-~~~d~ 206 (243)
T 1mv5_A 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLS-TI-VDADK 206 (243)
T ss_dssp CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHH-HH-HHCSE
T ss_pred chhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChH-HH-HhCCE
Confidence 13456799999999999999999999999999999999999999999999986 3889999877643 44 56999
Q ss_pred EEEEcCCeEEEecChhhHH
Q 003389 414 IILLSEGQIVYQGPRDNVL 432 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (824)
+++|++|++++.|+++++.
T Consensus 207 v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp EEEEETTEECCCSCHHHHH
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988775
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1e-40 Score=356.77 Aligned_cols=209 Identities=22% Similarity=0.348 Sum_probs=167.8
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 56999999999999999999999999999999999999987 9999999998864322 356999999988776 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc--CCCccccccccCc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~ 338 (824)
||+||+.|+..... .. .+. . ++.. ...++.+++.+ ||+...+..++
T Consensus 108 tv~enl~~~~~~~~--~~----~~~---------------~---~~~~------~~~~~~~l~~l~~gl~~~~~~~~~-- 155 (271)
T 2ixe_A 108 SFRENIAYGLTRTP--TM----EEI---------------T---AVAM------ESGAHDFISGFPQGYDTEVGETGN-- 155 (271)
T ss_dssp BHHHHHHTTCSSCC--CH----HHH---------------H---HHHH------HHTCHHHHHHSTTGGGSBCCGGGT--
T ss_pred cHHHHHhhhcccCC--hH----HHH---------------H---HHHH------HHhHHHHHHhhhcchhhhhcCCcC--
Confidence 99999998642110 00 000 0 0000 01234567777 67666665554
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.++|+|+++|++ ..+ ..||+|++|+
T Consensus 156 ---~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~-~~~d~v~~l~ 230 (271)
T 2ixe_A 156 ---QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLA-ERAHHILFLK 230 (271)
T ss_dssp ---TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHH-TTCSEEEEEE
T ss_pred ---CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHH-HhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998654588998887664 344 4599999999
Q ss_pred CCeEEEecChhhHHH
Q 003389 419 EGQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (824)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.3e-40 Score=350.63 Aligned_cols=197 Identities=18% Similarity=0.247 Sum_probs=166.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 56999999999999999999999999999999999999987 999982 35699999999889899999
Q ss_pred HHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 264 ETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
||+.++.... +... .+..+ ....++++++.+||.+..+..+++
T Consensus 85 enl~~~~~~~~~~~~-----------------~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFA-----------------KPKSH--------------DYQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCTTC-----------------CCCHH--------------HHHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccccc-----------------CCCHH--------------HHHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999874321 1000 00000 012356789999999888877664
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|+++|+ ..++.++||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ-PNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC-HHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEeCCe-
Confidence 999999999999999999999999999999999999999999999987558898887765 456778999999999999
Q ss_pred EEecChhhH
Q 003389 423 VYQGPRDNV 431 (824)
Q Consensus 423 v~~G~~~~~ 431 (824)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
No 28
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.1e-40 Score=388.54 Aligned_cols=258 Identities=22% Similarity=0.396 Sum_probs=196.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.+++ ..+..+....+....+++++|+++.+.
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 350 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYD-----IKNGVGAQPIEIKQGRIDIDHVSFQYN---------------------------- 350 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCS-----SCCCTTCCCCCCCSCCEEEEEEEECSC----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCc-----ccCCCCccccCCCCCeEEEEEEEEEcC----------------------------
Confidence 35566778888888876654 111111111222334678888876421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+++++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 351 ----~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 423 (578)
T 4a82_A 351 ----DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQD 423 (578)
T ss_dssp ----SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSS
T ss_pred ----CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCC
Confidence 12346999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++. ||+||+.++.. +.+.++..+++...+.+. . .-.+++..||
T Consensus 424 ~~l~~~-tv~eni~~~~~-------------------------~~~~~~~~~~~~~~~~~~------~--~~~lp~g~~t 469 (578)
T 4a82_A 424 NILFSD-TVKENILLGRP-------------------------TATDEEVVEAAKMANAHD------F--IMNLPQGYDT 469 (578)
T ss_dssp CCCCSS-BHHHHHGGGCS-------------------------SCCHHHHHHHHHHTTCHH------H--HHTSTTGGGC
T ss_pred CccCcc-cHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCcHH------H--HHhCcchhhh
Confidence 888865 99999988621 111122223332222111 1 2356777899
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. . .+.||+
T Consensus 470 ~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~ 544 (578)
T 4a82_A 470 EVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS-T-ITHADK 544 (578)
T ss_dssp BCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-G-TTTCSE
T ss_pred hhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCE
Confidence 9985 4567999999999999999999999999999999999999999999999854 689888777654 3 456999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 545 i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 545 IVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.7e-40 Score=350.79 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=169.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCCC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~lT 261 (824)
++|+|||++|++|++++|+||||||||||||+|+|+++| . |+|.++|+++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 589999999999999999999999999999999999987 4 999999998754322 356999999998899999
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
|+||+.++.. ... . ...++++++.+||++..+..++
T Consensus 90 v~e~l~~~~~-~~~---------------------~-----------------~~~~~~~l~~~~l~~~~~~~~~----- 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT---------------------R-----------------TELLNDVAGALALDDKLGRSTN----- 125 (249)
T ss_dssp HHHHHHTTCS-STT---------------------C-----------------HHHHHHHHHHTTCGGGTTSBGG-----
T ss_pred HHHHHHHhhc-cCC---------------------c-----------------HHHHHHHHHHcCChhHhcCChh-----
Confidence 9999988521 100 0 0124568899999988887765
Q ss_pred CCCHHHHHHHHHHHHHHcCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 342 GISGGQKKRVTTGEMLVGTAN-------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~-------iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
.|||||||||+||++|+.+|+ +|||||||+|||+.++..+.+.|++++++ |+|+|++.|+ ..++.++||++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd-~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHD-LNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSC-HHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEE
Confidence 499999999999999999999 99999999999999999999999999765 8898887655 55677899999
Q ss_pred EEEcCCeEEEecChhhH
Q 003389 415 ILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~ 431 (824)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.9e-41 Score=354.08 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=164.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~--l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+++|+|||++|++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 5699999999999999999999999999999999998 6665 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC-Cccccccc
Q 003389 258 GEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~v 335 (824)
+.+||+||+.+.... .+.. ...+ +....++++++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------VGVA-------------EFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------CCHH-------------HHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------CCHH-------------HHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999886421 1100 0000 001235678999999 47777766
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeE
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDI 414 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~i 414 (824)
++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|+|+++|++ .++..+ ||++
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEE
Confidence 42 3999999999999999999999999999999999999999999999965 488999887765 466667 5999
Q ss_pred EEEcCCeEEEecChhh
Q 003389 415 ILLSEGQIVYQGPRDN 430 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~ 430 (824)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
No 31
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.9e-40 Score=387.28 Aligned_cols=257 Identities=22% Similarity=0.313 Sum_probs=194.5
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhcccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLV 177 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 177 (824)
++....++|+.++++.+++ ..+..+....+.+.-.++++|+++.+.
T Consensus 307 ~~~~~s~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~~~y~----------------------------- 352 (587)
T 3qf4_A 307 VRASASAKRVLEVLNEKPA-----IEEADNALALPNVEGSVSFENVEFRYF----------------------------- 352 (587)
T ss_dssp HHHHHHHHHHHHHHHCCCS-----CCCCTTCBCCSCCCCCEEEEEEEECSS-----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----cCCCCCccccCCCCCcEEEEEEEEEcC-----------------------------
Confidence 4456677777777776544 111111111122234578888775420
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d 254 (824)
.+.+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++
T Consensus 353 ---~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 426 (587)
T 3qf4_A 353 ---ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQET 426 (587)
T ss_dssp ---SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSC
T ss_pred ---CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCC
Confidence 12356999999999999999999999999999999999999997 9999999999876543 46799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
.+++. ||+||+.++... .+.++..+++...+. .+. ...+++..||.
T Consensus 427 ~lf~~-tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~~------~~~--i~~l~~g~~~~ 472 (587)
T 3qf4_A 427 VLFSG-TIKENLKWGRED-------------------------ATDDEIVEAAKIAQI------HDF--IISLPEGYDSR 472 (587)
T ss_dssp CCCSE-EHHHHHTTTCSS-------------------------CCHHHHHHHHHHTTC------HHH--HHTSSSGGGCE
T ss_pred cCcCc-cHHHHHhccCCC-------------------------CCHHHHHHHHHHhCc------HHH--HHhcccchhhH
Confidence 88864 999999876311 111122222222211 111 23566778888
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+|+ .+..||||||||++|||||+.+|++|+|||||++||+.++.+|.+.|+++. .++|+|++.|++. ....||+|
T Consensus 473 ~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~--~~~~~d~i 547 (587)
T 3qf4_A 473 VER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIP--TALLADKI 547 (587)
T ss_dssp ECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH--HHTTSSEE
T ss_pred hcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH--HHHhCCEE
Confidence 885 456799999999999999999999999999999999999999999999985 3789999887654 45689999
Q ss_pred EEEcCCeEEEecChhhHHH
Q 003389 415 ILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (824)
++|++|+++++|+++++.+
T Consensus 548 ~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 548 LVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998864
No 32
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.1e-40 Score=352.39 Aligned_cols=221 Identities=22% Similarity=0.256 Sum_probs=173.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~ 257 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+. +|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 56999999999999999999999999999999999984 455 9999999998765332 23499999999999
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-cccccccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 336 (824)
+.+||.|++.+..... . ... .. +....+ +....++++++.+||+ +..++.++
T Consensus 110 ~~~tv~e~~~~~~~~~------------~-~~~--~~-~~~~~~-----------~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAV------------R-SYR--GQ-ETLDRF-----------DFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHH------------H-HGG--GC-CCCCHH-----------HHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhh------------h-hhh--cc-ccCCHH-----------HHHHHHHHHHHHcCCChhHhcCCcc
Confidence 9999999998753110 0 000 00 000000 0012356789999996 56666654
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh-cCeEE
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l-fD~ii 415 (824)
. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|+|+++|++ .++..+ ||+++
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEE
Confidence 1 4999999999999999999999999999999999999999999999864 488988887654 456665 89999
Q ss_pred EEcCCeEEEecChhhHHHHHHHcCCC
Q 003389 416 LLSEGQIVYQGPRDNVLEFFEHMGFK 441 (824)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~f~~~G~~ 441 (824)
+|++|++++.|+++++.. .+..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4555554
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.6e-39 Score=345.63 Aligned_cols=200 Identities=23% Similarity=0.357 Sum_probs=162.5
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|||++|++|++++|+|||||||||||++|+|++++ +|+|.++|+++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999864 7999999998764322 357999999988875 6
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-------CCCccccc
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-------GLDICADT 333 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-------gL~~~~dt 333 (824)
||+||+.|+.. ... .++ +.++++.+ ++++..++
T Consensus 108 tv~enl~~~~~--~~~-----------------------~~~---------------~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL--DAT-----------------------DEE---------------VIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT--TCC-----------------------HHH---------------HHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC--CCC-----------------------HHH---------------HHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 000 000 11122233 35555666
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.++. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|+|++.|++. .+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~tviivtH~~~-~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS-TI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TSEEEEECSSGG-GS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HH-HhCCE
Confidence 6653 4667999999999999999999999999999999999999999999999853 789999887754 34 46999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
+++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 34
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.3e-38 Score=398.67 Aligned_cols=258 Identities=22% Similarity=0.303 Sum_probs=208.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCC--CcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEI--PKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLL 174 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~--p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 174 (824)
.++....++|+.++++.+|+ +.+.. ..+... .+.+++|+|+++.++
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~-----~~~~~-~~~~~~~~~~g~I~~~nvsF~Y~-------------------------- 426 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPV-----IDSSS-KAGRKDMKIKGDITVENVHFTYP-------------------------- 426 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-----SSCSS-SCCCCCCCCCCCEEEEEEEECCS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccccc-cccccCCCCCCcEEEEEeeeeCC--------------------------
Confidence 35566778888888876655 22111 122222 234689999887531
Q ss_pred ccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEe
Q 003389 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYIS 251 (824)
Q Consensus 175 ~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~ 251 (824)
...+.++|+|||++|+||+++||+||+|||||||+++|.|+++|. +|+|.+||+++++... ++.++||+
T Consensus 427 -----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 427 -----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp -----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred -----CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHHHHhhcccccC
Confidence 112457999999999999999999999999999999999999997 9999999999987654 46899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|++.++.. ||+|||.|+. |+.+.+++.++++..+.+.. +-.|++..
T Consensus 499 Q~~~Lf~~-TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~l~~~--------i~~lp~G~ 544 (1321)
T 4f4c_A 499 QEPALFNC-TIEENISLGK-------------------------EGITREEMVAACKMANAEKF--------IKTLPNGY 544 (1321)
T ss_dssp SSCCCCSE-EHHHHHHTTC-------------------------TTCCHHHHHHHHHHTTCHHH--------HHHSTTTT
T ss_pred CcceeeCC-chhHHHhhhc-------------------------ccchHHHHHHHHHHccchhH--------HHcCCCCC
Confidence 99887754 9999999862 33344566677666554332 33578899
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
||.||+.. ..||||||||++||||++++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++.|+.+ +.+.|
T Consensus 545 ~T~vGe~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~i~~a 619 (1321)
T 4f4c_A 545 NTLVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--TIRNA 619 (1321)
T ss_dssp SSEESSSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--TTTTC
T ss_pred ccEecCCC-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHH--HHHhC
Confidence 99999754 45999999999999999999999999999999999999999999999874 789999888764 77899
Q ss_pred CeEEEEcCCeEEEecChhhHHH
Q 003389 412 DDIILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~~ 433 (824)
|+|++|++|+|+++|+++++.+
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHT
T ss_pred CEEEEeeCCeeeccCCHHHHHH
Confidence 9999999999999999999874
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.4e-40 Score=347.67 Aligned_cols=194 Identities=21% Similarity=0.208 Sum_probs=165.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE-EEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~-yv~Q~d~~~~~lTV 262 (824)
+++|+|||++|+ |++++|+||||||||||||+|+|++ |+ +|+|.++|+++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 87 999999998875421246799 99998776 8999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCccCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r 341 (824)
+||+.+....... ....++.+++.+||+ +..++.++
T Consensus 91 ~enl~~~~~~~~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~----- 127 (263)
T 2pjz_A 91 NDIVYLYEELKGL--------------------------------------DRDLFLEMLKALKLGEEILRRKLY----- 127 (263)
T ss_dssp HHHHHHHHHHTCC--------------------------------------CHHHHHHHHHHTTCCGGGGGSBGG-----
T ss_pred HHHHHHhhhhcch--------------------------------------HHHHHHHHHHHcCCChhHhcCChh-----
Confidence 9999886422100 011346688999998 88887766
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC-eEEEEcCC
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD-DIILLSEG 420 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD-~iilL~~G 420 (824)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++ . |+|+++|++ .++.++|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~-~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHEL-DMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCG-GGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCH-HHHHHhcCceEEEEECC
Confidence 499999999999999999999999999999999999999999999874 2 888877654 56778999 99999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
No 36
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-39 Score=384.17 Aligned_cols=256 Identities=23% Similarity=0.351 Sum_probs=193.4
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.+++. +..+........-+++++|+++.
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~------~~~~~~~~~~~~~~i~~~~v~~~------------------------------ 363 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEK------DDPDAVELREVRGEIEFKNVWFS------------------------------ 363 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCC------CCSSCCCCCSCCCCEEEEEEECC------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC------CCCCCCCCCCCCCeEEEEEEEEE------------------------------
Confidence 345667788888888765541 10111112222345777777643
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
+.+++++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 364 ---y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~ 437 (598)
T 3qf4_B 364 ---YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQD 437 (598)
T ss_dssp ---SSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTT
T ss_pred ---CCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCC
Confidence 222356999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .||+||+.++.... .+ +++.+++...+ .++. .-.+++..||
T Consensus 438 ~~lf~-~tv~eni~~~~~~~----------------------~~---~~~~~~~~~~~------~~~~--~~~~~~g~~t 483 (598)
T 3qf4_B 438 TILFS-TTVKENLKYGNPGA----------------------TD---EEIKEAAKLTH------SDHF--IKHLPEGYET 483 (598)
T ss_dssp CCCCS-SBHHHHHHSSSTTC----------------------CT---THHHHHTTTTT------CHHH--HHTSTTGGGC
T ss_pred Ccccc-ccHHHHHhcCCCCC----------------------CH---HHHHHHHHHhC------CHHH--HHhccccccc
Confidence 88775 59999998852100 01 11111111111 1111 2245667788
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|++.|++. . .+.||+
T Consensus 484 ~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~-~-~~~~d~ 558 (598)
T 3qf4_B 484 VLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLN-T-IKNADL 558 (598)
T ss_dssp BCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTT-H-HHHCSE
T ss_pred hhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHcCCE
Confidence 8884 4556999999999999999999999999999999999999999999999863 889999887765 3 456999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 559 i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 559 IIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEEECSSSEEECSCHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.7e-39 Score=379.79 Aligned_cols=210 Identities=23% Similarity=0.392 Sum_probs=167.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999997 9999999999876432 357999999988876 5
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.++..... ..+.+++.+++...+. ++.+ -.+++..||.+|+ .+
T Consensus 433 tv~eni~~~~~~~~----------------------~~~~~~~~~~~~~~~l------~~~~--~~l~~g~~~~~~~-~~ 481 (595)
T 2yl4_A 433 SIAENIAYGADDPS----------------------SVTAEEIQRVAEVANA------VAFI--RNFPQGFNTVVGE-KG 481 (595)
T ss_dssp BHHHHHHTTSSSTT----------------------TSCHHHHHHHHHHTTC------HHHH--HTSSSGGGCBCSS-SS
T ss_pred CHHHHHhhcCCCcc----------------------ccCHHHHHHHHHHcCC------HHHH--HhCcccccccccC-CC
Confidence 99999998632100 0011111122111111 1111 1456678899985 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.||+|++|++|
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLS--TIKNANMVAVLDQG 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHH--HHHHSSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH--HHHcCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999875 789998877653 34679999999999
Q ss_pred eEEEecChhhHH
Q 003389 421 QIVYQGPRDNVL 432 (824)
Q Consensus 421 ~iv~~G~~~~~~ 432 (824)
++++.|+++++.
T Consensus 558 ~i~~~g~~~~l~ 569 (595)
T 2yl4_A 558 KITEYGKHEELL 569 (595)
T ss_dssp EEEEEECSCC--
T ss_pred EEEEECCHHHHH
Confidence 999999998875
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.2e-39 Score=377.22 Aligned_cols=257 Identities=22% Similarity=0.330 Sum_probs=191.9
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.++....++|+.++++.+++. .+ .....+...-.++++|+++.+.
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~-----~~--~~~~~~~~~~~i~~~~v~~~y~---------------------------- 352 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETER-----DN--GKYEAERVNGEVDVKDVTFTYQ---------------------------- 352 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcC-----CC--CCCCCCCCCCeEEEEEEEEEcC----------------------------
Confidence 355667778888877765541 00 0011111133577888876531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.+++++|+|+|++|++||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+... ++.++||+|+
T Consensus 353 ----~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 353 ----GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQN 425 (582)
T ss_pred ----CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCC
Confidence 01246999999999999999999999999999999999999997 9999999998865432 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+++ .||+||+.++.. .. .+.+++.+++...+. ++.++ .+++..||
T Consensus 426 ~~l~~-~tv~eni~~~~~-~~-----------------------~~~~~~~~~~~~~~l------~~~~~--~~p~g~~t 472 (582)
T 3b5x_A 426 VHLFN-DTIANNIAYAAE-GE-----------------------YTREQIEQAARQAHA------MEFIE--NMPQGLDT 472 (582)
T ss_pred Ccccc-ccHHHHHhccCC-CC-----------------------CCHHHHHHHHHHCCC------HHHHH--hCcccccc
Confidence 88886 499999988631 00 001111122211111 11112 33456788
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.+|+ .+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|++.|++. ..+.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLS--TIEQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHhCCE
Confidence 8885 4567999999999999999999999999999999999999999999999863 889999887754 4467999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998753
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=371.00 Aligned_cols=201 Identities=24% Similarity=0.276 Sum_probs=166.5
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 259 (824)
+..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|+++....+ ++.++||+|+..+++
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 3569999999999999999999999999999999999986 5 8999999999876543 367999999998887
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC--
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD-- 337 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-- 337 (824)
+||+||+.+.... ....+.++++.++|.+..+..+..
T Consensus 108 ~tv~enl~~~~~~-----------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~ 146 (390)
T 3gd7_A 108 GTFRKNLDPNAAH-----------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLD 146 (390)
T ss_dssp EEHHHHHCTTCCS-----------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGG
T ss_pred cCHHHHhhhcccc-----------------------------------------CHHHHHHHHHHhCCHHHHhhcccccc
Confidence 6999999643110 001234567788887666655432
Q ss_pred ----ccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 338 ----EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 338 ----~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
+....|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++. .+.|+|++.|+. +....||+
T Consensus 147 ~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDr 222 (390)
T 3gd7_A 147 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQ 222 (390)
T ss_dssp CEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSE
T ss_pred cccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCE
Confidence 2234599999999999999999999999999999999999999999999864 367888876653 45677999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+|+..|+++++..
T Consensus 223 i~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 223 FLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEEETTEEEEESSHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998853
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.8e-39 Score=377.46 Aligned_cols=209 Identities=23% Similarity=0.365 Sum_probs=168.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 56999999999999999999999999999999999999997 9999999999876432 357999999988887 4
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.++.. .. .+.+++.+++...+. ++.++ .+++..||.+|+ .+
T Consensus 432 tv~eni~~~~~-~~-----------------------~~~~~~~~~l~~~~l------~~~~~--~~p~g~~~~~~~-~~ 478 (582)
T 3b60_A 432 TVANNIAYART-EE-----------------------YSREQIEEAARMAYA------MDFIN--KMDNGLDTIIGE-NG 478 (582)
T ss_dssp BHHHHHHTTTT-SC-----------------------CCHHHHHHHHHTTTC------HHHHH--HSTTGGGSBCCT-TS
T ss_pred CHHHHHhccCC-CC-----------------------CCHHHHHHHHHHcCC------HHHHH--hccccccccccC-CC
Confidence 99999998631 00 001111222211111 11222 234567888885 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++.|++. ..+.||+|++|++|
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~--~~~~~d~i~~l~~G 554 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDG 554 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH--HHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999999864 789999887754 34679999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
++++.|+++++.+
T Consensus 555 ~i~~~g~~~~l~~ 567 (582)
T 3b60_A 555 IIVERGTHSELLA 567 (582)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEecCHHHHHH
Confidence 9999999998754
No 41
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-39 Score=414.39 Aligned_cols=261 Identities=22% Similarity=0.270 Sum_probs=207.5
Q ss_pred hhhHHHHHHHHHHHhccChHHHHHHHhhhccccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 97 ~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
.+......+|+.++++..++ ..+........+..-+++|+|+++.+.
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~g~I~f~nVsf~Y~---------------------------- 1087 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISK-----IDSLSLAGEKKKLYGKVIFKNVRFAYP---------------------------- 1087 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-----SCTTCCCSBCCCCCCCEEEEEEEECCT----------------------------
T ss_pred HHHHHHHHHHHHHHhhCccc-----CCCccCCCCCCCCCCeEEEEEEEEeCC----------------------------
Confidence 34566777888888876655 211111111222334789999887531
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.....++|+|||++|+|||.+||+||||||||||+++|.|+++|. +|+|.+||+++.+... ++.++||+|+
T Consensus 1088 ---~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qd 1161 (1321)
T 4f4c_A 1088 ---ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQE 1161 (1321)
T ss_dssp ---TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSS
T ss_pred ---CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCC
Confidence 112346999999999999999999999999999999999999997 9999999999987654 5789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.+|.. ||||||.|+.. .++.+.+++++++...+.+.. +-.|++.+||
T Consensus 1162 p~LF~g-TIreNI~~gld-----------------------~~~~sd~ei~~Al~~a~l~~~--------I~~Lp~GldT 1209 (1321)
T 4f4c_A 1162 PTLFDC-SIAENIIYGLD-----------------------PSSVTMAQVEEAARLANIHNF--------IAELPEGFET 1209 (1321)
T ss_dssp CCCCSE-EHHHHHSSSSC-----------------------TTTSCHHHHHHHHHHTTCHHH--------HHTSTTTTCS
T ss_pred CEeeCc-cHHHHHhccCC-----------------------CCCCCHHHHHHHHHHhCChHH--------HHcCcCCCCC
Confidence 888765 99999988631 122344556666665554332 3468889999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+. +..||||||||++|||||+++|+||+||||||+||+.|...|.+.|+++.+ ++|+|++.|.. ++...||+
T Consensus 1210 ~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRL--sTi~~aD~ 1284 (1321)
T 4f4c_A 1210 RVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRL--NTVMNADC 1284 (1321)
T ss_dssp EETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSS--STTTTCSE
T ss_pred EecCC-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCH--HHHHhCCE
Confidence 99964 456999999999999999999999999999999999999999999998764 78999987754 46788999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|+||++|+|+++|+++++++
T Consensus 1285 I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1285 IAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEESSSSEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999975
No 42
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=7.5e-40 Score=338.18 Aligned_cols=188 Identities=17% Similarity=0.261 Sum_probs=157.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 7999999999999999999999999999999999999987 999999999875 23577999999999999999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
|+.++....+. . . + ...++++++.+||++. +..++ .||
T Consensus 98 nl~~~~~~~~~--------------------~-~--------------~-~~~~~~~l~~~gl~~~-~~~~~-----~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV--------------------K-V--------------N-KNEIMDALESVEVLDL-KKKLG-----ELS 135 (214)
T ss_dssp HHHHHHHHTTC--------------------C-C--------------C-HHHHHHHHHHTTCCCT-TSBGG-----GSC
T ss_pred HHHHHHHhcCC--------------------c-h--------------H-HHHHHHHHHHcCCCcC-CCChh-----hCC
Confidence 99986432210 0 0 0 1134668899999877 66654 599
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++. ++|+|+++|++. ++..+||+++++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999999764 789999887654 677788887755 4444
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.1e-38 Score=332.80 Aligned_cols=197 Identities=22% Similarity=0.329 Sum_probs=153.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++| .++|++|++.+++. ||
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv 85 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TI 85 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CH
Confidence 356999999999999999999999999999999999999987 99999998 38999999888875 99
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
+||+.|+.... . . ..++..+. . .....++. +....++.+++ ....
T Consensus 86 ~enl~~~~~~~---~-~-------------------~~~~~~~~---~------~l~~~~~~--~~~~~~~~~~~-~~~~ 130 (229)
T 2pze_A 86 KENIIFGVSYD---E-Y-------------------RYRSVIKA---C------QLEEDISK--FAEKDNIVLGE-GGIT 130 (229)
T ss_dssp HHHHHTTSCCC---H-H-------------------HHHHHHHH---T------TCHHHHTT--STTGGGSCBCT-TCTT
T ss_pred HHHhhccCCcC---h-H-------------------HHHHHHHH---h------CcHHHHHh--CcccccccccC-CCCc
Confidence 99999863210 0 0 00000000 0 00111222 22333445542 3567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~-L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++. ++++. .++|+|+++|++ .++ ..||++++|++|+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh-HHH-HhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999997 45554 278998887764 344 4699999999999
Q ss_pred EEEecChhhHH
Q 003389 422 IVYQGPRDNVL 432 (824)
Q Consensus 422 iv~~G~~~~~~ 432 (824)
+++.|+++++.
T Consensus 207 i~~~g~~~~~~ 217 (229)
T 2pze_A 207 SYFYGTFSELQ 217 (229)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998774
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=333.94 Aligned_cols=195 Identities=24% Similarity=0.327 Sum_probs=153.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+|||||||||||++|+|+++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 56999999999999999999999999999999999999987 99999998 3899999975 5688999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCccCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRRG 342 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~rg 342 (824)
||+.++..... ...++..++ ..+++.+++. ...++.++ +.+..
T Consensus 84 enl~~~~~~~~-----------------------~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLEE-----------------------PYYRSVIQA------------CALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCCT-----------------------THHHHHHHH------------TTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccCH-----------------------HHHHHHHHH------------HhhHHHHHhcccccccccc-CCCCC
Confidence 99988632110 000000000 0012233332 22333343 34567
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLK---QMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~---~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+ ++. .++|+|+++|+.. .+ ..||++++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 443 3789999887764 34 57999999999
Q ss_pred CeEEEecChhhHH
Q 003389 420 GQIVYQGPRDNVL 432 (824)
Q Consensus 420 G~iv~~G~~~~~~ 432 (824)
|++++.|+++++.
T Consensus 204 G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 204 GKISEMGSYQELL 216 (237)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998774
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-36 Score=386.49 Aligned_cols=208 Identities=26% Similarity=0.344 Sum_probs=171.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 260 (824)
.++|+|||++|+|||+++|+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|++.+++.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 46999999999999999999999999999999999999997 9999999999876543 4679999999988865
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||+||+.|+... .+.+++.+++...+.+ +.+ -.|++..||.+|+ .+
T Consensus 479 ti~eNi~~g~~~-------------------------~~~~~~~~~~~~~~~~------~~i--~~l~~g~~t~~~~-~g 524 (1284)
T 3g5u_A 479 TIAENIRYGRED-------------------------VTMDEIEKAVKEANAY------DFI--MKLPHQFDTLVGE-RG 524 (1284)
T ss_dssp CHHHHHHHHCSS-------------------------CCHHHHHHHHHHTTCH------HHH--HHSTTGGGCCCSS-SS
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHhCcH------HHH--HhccccccccccC-CC
Confidence 999999986321 1112233333322211 122 2466788999985 45
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
..|||||||||+|||||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|++.|+.. +...||+|++|++|
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~--~i~~~d~i~vl~~G 600 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLS--TVRNADVIAGFDGG 600 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCHH--HHTTCSEEEECSSS
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH--HHHcCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 789988776543 44569999999999
Q ss_pred eEEEecChhhHHH
Q 003389 421 QIVYQGPRDNVLE 433 (824)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (824)
+++++|+++++.+
T Consensus 601 ~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 601 VIVEQGNHDELMR 613 (1284)
T ss_dssp CCCCEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.6e-36 Score=327.08 Aligned_cols=195 Identities=22% Similarity=0.325 Sum_probs=149.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 116 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIK 116 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHH
Confidence 46999999999999999999999999999999999999987 99999998 38999999888774 999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
||+. +... .. . ..+..++. .+ .+..++.+ ....++.+++ .+..|
T Consensus 117 enl~-~~~~---~~-~-------------------~~~~~~~~---~~------l~~~l~~~--~~~~~~~~~~-~~~~L 160 (290)
T 2bbs_A 117 ENII-GVSY---DE-Y-------------------RYRSVIKA---CQ------LEEDISKF--AEKDNIVLGE-GGITL 160 (290)
T ss_dssp HHHH-TTCC---CH-H-------------------HHHHHHHH---TT------CHHHHHTS--TTGGGCBC-----CCC
T ss_pred HHhh-Cccc---ch-H-------------------HHHHHHHH---hC------hHHHHHhc--cccccchhcC-ccCcC
Confidence 9997 4211 00 0 00000000 00 11122222 2233444442 35679
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL-KQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L-~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.+ +++. .++|+|++.|++ ..+ ..||++++|++|++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSS 236 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeE
Confidence 999999999999999999999999999999999999999974 5553 378999887764 344 56999999999999
Q ss_pred EEecChhhHH
Q 003389 423 VYQGPRDNVL 432 (824)
Q Consensus 423 v~~G~~~~~~ 432 (824)
++.|+++++.
T Consensus 237 ~~~g~~~~l~ 246 (290)
T 2bbs_A 237 YFYGTFSELQ 246 (290)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHh
Confidence 9999998874
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.2e-35 Score=376.98 Aligned_cols=260 Identities=21% Similarity=0.305 Sum_probs=194.4
Q ss_pred hhHHHHHHHHHHHhccChHHHHHHHhhhc-cccCCCCCcEEEEEeeeeEEEEEecCCccCcchhHHHHHHHHHHhhhccc
Q 003389 98 QDKKRLLESILKIVEEDNEKFLKRIRHRT-DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176 (824)
Q Consensus 98 ~~~~~~~~r~~~~~~~~~e~~~~~~~~~~-~~~~~~~p~v~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 176 (824)
+......+|+.++++..++ ..... ...........++++|+++.+.
T Consensus 995 ~~~~~a~~ri~~~l~~~~~-----~~~~~~~~~~~~~~~g~i~~~~v~~~y~---------------------------- 1041 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPE-----IDSYSTQGLKPNMLEGNVQFSGVVFNYP---------------------------- 1041 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCS-----SSSCCSSCCCTTTTSCCEEEEEEEBCCS----------------------------
T ss_pred HHHHHHHHHHHHHHcCCCc-----ccccccccccccCCCCcEEEEEEEEECC----------------------------
Confidence 4566777888888776554 11100 0111112234577888775421
Q ss_pred ccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecC
Q 003389 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQH 253 (824)
Q Consensus 177 ~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~ 253 (824)
.....++|+|||++|++||++||+||||||||||+++|+|+++|+ +|+|.+||+++..... ++.++||+|+
T Consensus 1042 ---~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 1115 (1284)
T 3g5u_A 1042 ---TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115 (1284)
T ss_dssp ---CGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESS
T ss_pred ---CCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCC
Confidence 111246999999999999999999999999999999999999997 9999999999876543 4679999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
+.++ +.||+||+.++...... +.+++.+++...+. +.. .-.+++..||
T Consensus 1116 ~~l~-~~ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~~~------~~~--i~~l~~gldt 1163 (1284)
T 3g5u_A 1116 PILF-DCSIAENIAYGDNSRVV-----------------------SYEEIVRAAKEANI------HQF--IDSLPDKYNT 1163 (1284)
T ss_dssp CCCC-SSBHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHHTC------HHH--HSSTTTGGGC
T ss_pred Cccc-cccHHHHHhccCCCCCC-----------------------CHHHHHHHHHHhCc------HHH--HHhCcccccc
Confidence 8666 56999999886321111 11122222221111 111 2356788999
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
.||+ .+..|||||||||+|||+|+.+|++|+|||||+|||+.++..|.+.|++.. .|+|+|++.|... .+ ..||+
T Consensus 1164 ~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dr 1238 (1284)
T 3g5u_A 1164 RVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADL 1238 (1284)
T ss_dssp BCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSE
T ss_pred ccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCE
Confidence 9996 456799999999999999999999999999999999999999999999864 4789888777654 44 66999
Q ss_pred EEEEcCCeEEEecChhhHHH
Q 003389 414 IILLSEGQIVYQGPRDNVLE 433 (824)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~ 433 (824)
|++|++|+++++|+++++.+
T Consensus 1239 i~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1239 IVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEETBEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.6e-33 Score=327.84 Aligned_cols=191 Identities=26% Similarity=0.309 Sum_probs=162.4
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
.|+++|++|++||+++|+|||||||||||++|+|+++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 578888899999999999999999999999999999987 999986 2459999999877788999998
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
+...... ... ....++.+|+.+||.+..++.+++ |||
T Consensus 438 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHH-----------HHH---------------------------CHHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 8653100 000 011345688999999888887765 999
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--CeEE
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~iv 423 (824)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++..|.|+|+++| +..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsH-d~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH-DVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeC-CHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999998666888888764 56688889999999986 8889
Q ss_pred EecChhhHHH
Q 003389 424 YQGPRDNVLE 433 (824)
Q Consensus 424 ~~G~~~~~~~ 433 (824)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.5e-33 Score=322.06 Aligned_cols=191 Identities=26% Similarity=0.314 Sum_probs=160.7
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
.|+++|++|++||+++|+|||||||||||++|+|+++|+ +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 578888889999999999999999999999999999987 999986 2359999999877788999888
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
+...... ... ....++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~-----------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDAS-----------KLN---------------------------SNFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHH-----------HHT---------------------------CHHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhcc-----------CCC---------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 7542100 000 011245678889998888877764 999
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--CeEE
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~iv 423 (824)
||||||+||++|+.+|++|||||||+|||..++.+|.+.|+++++..|.|+|+++ |+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE-HDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC-SCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEeCCcceEe
Confidence 9999999999999999999999999999999999999999999755578888875 556788899999999986 8899
Q ss_pred EecChhhHHH
Q 003389 424 YQGPRDNVLE 433 (824)
Q Consensus 424 ~~G~~~~~~~ 433 (824)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=3.5e-32 Score=316.39 Aligned_cols=192 Identities=22% Similarity=0.264 Sum_probs=159.3
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
.|+++|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| +.++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 567778889999999999999999999999999999997 99999865 348999998776778999999
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
+.+..... . .. ....++++++.+||.+..++.+++ |||
T Consensus 351 l~~~~~~~-~-------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDA-L-------------------ST-----------------SSWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSST-T-------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhc-c-------------------ch-----------------hHHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 97742100 0 00 011245678889999888887765 999
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC--CeEE
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE--GQIV 423 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~--G~iv 423 (824)
||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|+++ |+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vs-Hdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID-HDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEEC-SCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999999876788888865 556788899999999986 6666
Q ss_pred EecChhhHH
Q 003389 424 YQGPRDNVL 432 (824)
Q Consensus 424 ~~G~~~~~~ 432 (824)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.7e-32 Score=318.87 Aligned_cols=193 Identities=24% Similarity=0.240 Sum_probs=160.6
Q ss_pred cccccceeeEEeCC-----eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCC
Q 003389 184 VRILKDVSGIVKPS-----RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~vs~~I~~G-----e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~ 258 (824)
..+++|+|+++++| |+++|+|||||||||||++|+|+++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 45789999999999 789999999999999999999999997 7862 1 1346899999877667
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
..||+|++....+ +.. . ....++.+++.+||.+.++..+++
T Consensus 427 ~~tv~e~~~~~~~--~~~-------------------~-----------------~~~~~~~~l~~l~l~~~~~~~~~~- 467 (608)
T 3j16_B 427 PGTVRQLFFKKIR--GQF-------------------L-----------------NPQFQTDVVKPLRIDDIIDQEVQH- 467 (608)
T ss_dssp CSBHHHHHHHHCS--STT-------------------T-----------------SHHHHHHTHHHHTSTTTSSSBSSS-
T ss_pred CccHHHHHHHHhh--ccc-------------------c-----------------cHHHHHHHHHHcCChhhhcCChhh-
Confidence 7899998753211 100 0 001235678899999888877764
Q ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++..|.|+|+++ |+..++..+||||++|+
T Consensus 468 ----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivt-Hdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE-HDFIMATYLADKVIVFE 542 (608)
T ss_dssp ----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEC-SCHHHHHHHCSEEEECE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-CCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999765688888875 55678889999999998
Q ss_pred C--CeEEEecChhhHHH
Q 003389 419 E--GQIVYQGPRDNVLE 433 (824)
Q Consensus 419 ~--G~iv~~G~~~~~~~ 433 (824)
+ |+++..|+++++..
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999988864
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=3.2e-31 Score=308.74 Aligned_cols=182 Identities=22% Similarity=0.238 Sum_probs=148.6
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE---------eeCCcccCCC-----CCCceEEEE
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~i~yv 250 (824)
.+|+||| .|++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhh
Confidence 4899999 99999999999999999999999999999987 8886 4677665321 112457899
Q ss_pred ecCCCCCCC---CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 251 SQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 251 ~Q~d~~~~~---lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|+....+. .||.|++.... ....++++|+.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~-------------------------------------------~~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKAD-------------------------------------------ETGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHC-------------------------------------------SSSCHHHHHHHTTC
T ss_pred hhhhhhcchhhhccHHHHHhhhh-------------------------------------------HHHHHHHHHHHcCC
Confidence 987443332 37888764210 01135678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
++..++.+++ |||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|+|++.| ...++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsH-d~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEH-DLAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CHHHH
T ss_pred ChhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHHHH
Confidence 9888887764 999999999999999999999999999999999999999999999986 4888888765 56688
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
..+||+|++|.+|
T Consensus 222 ~~~~dri~vl~~~ 234 (538)
T 1yqt_A 222 DYLSDIIHVVYGE 234 (538)
T ss_dssp HHHCSEEEEEEEE
T ss_pred HHhCCEEEEEcCc
Confidence 8999999999865
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=3.8e-31 Score=311.54 Aligned_cols=182 Identities=24% Similarity=0.263 Sum_probs=149.2
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE---------eeCCcccCCC-----CCCceEEEE
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~~~i~yv 250 (824)
.+|+|+| .|++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCccccccchhhheeCCEehhhhhhhhhhhhcceEEe
Confidence 4899999 99999999999999999999999999999987 8886 5677665321 112457888
Q ss_pred ecCCCCCC---CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 251 SQHDLHHG---EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 251 ~Q~d~~~~---~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|.....+ ..||.|++.... ....++++|+.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~-------------------------------------------~~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD-------------------------------------------EVGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC-------------------------------------------CSSCHHHHHHHTTC
T ss_pred echhhhchhhccccHHHHhhhhH-------------------------------------------HHHHHHHHHHHcCC
Confidence 88643322 238999885310 01135678999999
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
++..|+.+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++.| ...++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsH-dl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEH-DLAVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CHHHH
T ss_pred CchhCCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEec-ChHHH
Confidence 9888888765 999999999999999999999999999999999999999999999986 4888888765 45578
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
..+||+|++|.+|
T Consensus 292 ~~~adri~vl~~~ 304 (607)
T 3bk7_A 292 DYLSDVIHVVYGE 304 (607)
T ss_dssp HHHCSEEEEEESC
T ss_pred HhhCCEEEEECCC
Confidence 8899999999865
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=6.2e-31 Score=314.58 Aligned_cols=215 Identities=23% Similarity=0.271 Sum_probs=138.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHH---------------------HHHhcCcCCCCC----CcceEeeCCcc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDLR----ASGKITYCGHE 237 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL---------------------~~LaG~l~~~~~----~sG~I~~nG~~ 237 (824)
...+|+|||++|++||+++|+||||||||||+ ++++|+..|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 888888777521 24667777765
Q ss_pred cCCCCCCceEEEEecCCC-------------------CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCCh
Q 003389 238 LNEFVPQRTCAYISQHDL-------------------HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (824)
Q Consensus 238 ~~~~~~~~~i~yv~Q~d~-------------------~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~ 298 (824)
.... +++.+++|+|... .++.+||+||+.+....... ..++..
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 4332 2344555555432 24578999999874321100 000000
Q ss_pred hHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCCCH
Q 003389 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (824)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGLDs 375 (824)
.+... .+.. ..-.+|+.+||.+. .++.+++ |||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 172 -~~~~~-------~~~~-~~~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIR-DRLGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CH-HHHHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHH-HHHHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00000 0000 11235889999764 5777764 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 376 ~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
.++..+++.|+++.+ .|.|+|++.|+. .. ...||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDE-DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCH-HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HH-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999976 488998877654 34 5579999999 899999999998875
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=1.8e-29 Score=307.41 Aligned_cols=185 Identities=21% Similarity=0.282 Sum_probs=151.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCC-CCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHD-LHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d-~~~~~lTV 262 (824)
+.+|+|+|++|++|++++|+||||||||||||+|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 569999999999999999999999999999999995 333 4433221 12368999874 67889999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC-ccccccccCccCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r 341 (824)
.|++.+ ...+. ...++.+|+.+||. +..++.+++
T Consensus 514 ~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcCH---------------------------------------HHHHHHHHHHcCCChhhhcCCccc----
Confidence 999975 11110 01245688999995 667777765
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|+|++.| ...++.++||+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSH-dl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISH-DSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECS-CHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEEC-CHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999988 3788888755 5667889999999999999
Q ss_pred EE-EecChhhHHH
Q 003389 422 IV-YQGPRDNVLE 433 (824)
Q Consensus 422 iv-~~G~~~~~~~ 433 (824)
++ +.|+.+++..
T Consensus 623 iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 623 LRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEESCHHHHHH
T ss_pred eecCCCCHHHHHh
Confidence 97 7899887654
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.7e-29 Score=302.09 Aligned_cols=106 Identities=26% Similarity=0.270 Sum_probs=90.3
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
.+.++.+||.. ..+..++ .|||||||||+|||||+.+| ++|||||||+|||+.++.+|++.|+++++ .|.
T Consensus 524 ~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~ 597 (670)
T 3ux8_A 524 LETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 597 (670)
T ss_dssp HHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCchhhccCCch-----hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 34677889864 3455554 59999999999999999886 59999999999999999999999999986 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|+|++.|+. .. ...||+|++| ++|++++.|+++++.
T Consensus 598 tvi~vtHd~-~~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 598 TVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEECCCH-HH-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEEeCCH-HH-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 999887654 34 4679999999 899999999999874
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=4.1e-30 Score=313.01 Aligned_cols=234 Identities=24% Similarity=0.303 Sum_probs=160.1
Q ss_pred HhhhcccccCccc-ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE
Q 003389 170 ALGLLHLVPSKKR-SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA 248 (824)
Q Consensus 170 ~l~~~~~~~~~~~-~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~ 248 (824)
++.+.++...+.+ .+++|+|||++|++|++++|+||||||||||||+|+|+++|+ +|+|.++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~--------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN--------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT--------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc--------cceE
Confidence 3555666555543 357999999999999999999999999999999999999997 999999863 2489
Q ss_pred EEecCCCC----CCCCCHHHHHHHhhhhcCCc--------------hh------------------------------hH
Q 003389 249 YISQHDLH----HGEMTVRETLDFSGRCLGVG--------------TR------------------------------YE 280 (824)
Q Consensus 249 yv~Q~d~~----~~~lTV~E~L~f~a~~~~~~--------------~~------------------------------~~ 280 (824)
|++|+..+ ..+.|++|++.+.... +.. .+ ++
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~-g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQT-GEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTT-SSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhc-cchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 99998532 2356999998763210 000 00 00
Q ss_pred --------------HHHHhHHHHHhcCCCCChhH-HHHHH---------HHHH--hccchhhhHHHHHHHcCCCcc--cc
Q 003389 281 --------------LLAELSRREKQAGIKPDPEI-DAFMK---------AVAV--AGQETSLVTDYVLKILGLDIC--AD 332 (824)
Q Consensus 281 --------------~~~~~~~~e~~~~i~~~~~~-~~~~~---------~~~~--~~~~~~~~~~~iL~~lgL~~~--~d 332 (824)
....++..+. ...+..+. ..+.+ +... ........++.+|+.+||... .+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en--~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDN--AWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGC--EEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhh--hhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC
Confidence 0000000000 00000000 00000 0000 011123456789999999753 46
Q ss_pred ccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 333 t~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
..++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|+|+++| ...++.++||
T Consensus 897 ~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISH-D~e~v~~l~D 966 (986)
T 2iw3_A 897 SRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITH-SAEFTKNLTE 966 (986)
T ss_dssp SCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECS-CHHHHTTTCC
T ss_pred CCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEEC-CHHHHHHhCC
Confidence 6655 49999999999999999999999999999999999999999988764 568777654 5567788999
Q ss_pred eEEEEcCCeEEEecC
Q 003389 413 DIILLSEGQIVYQGP 427 (824)
Q Consensus 413 ~iilL~~G~iv~~G~ 427 (824)
++++|.+|+++..|+
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999988774
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=5.2e-29 Score=289.76 Aligned_cols=175 Identities=22% Similarity=0.217 Sum_probs=136.6
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE-----------eeCCcccCCCC-----CCceEEEEecCCCCC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI-----------TYCGHELNEFV-----PQRTCAYISQHDLHH 257 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I-----------~~nG~~~~~~~-----~~~~i~yv~Q~d~~~ 257 (824)
+++||+++|+||||||||||||+|+|+++|+ +|+| .++|.++.... ....+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYA 98 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhh
Confidence 4599999999999999999999999999997 8998 67887653211 112244444432221
Q ss_pred ---CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 258 ---GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 258 ---~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
...||+|++... +....++++++.+||.+..|+.
T Consensus 99 ~~~~~~~v~~~l~~~-------------------------------------------~~~~~~~~~l~~l~l~~~~~~~ 135 (538)
T 3ozx_A 99 SKFLKGTVNEILTKI-------------------------------------------DERGKKDEVKELLNMTNLWNKD 135 (538)
T ss_dssp GTTCCSBHHHHHHHH-------------------------------------------CCSSCHHHHHHHTTCGGGTTSB
T ss_pred hhhccCcHHHHhhcc-------------------------------------------hhHHHHHHHHHHcCCchhhcCC
Confidence 233777654311 0012356788999999988888
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++. |...++..+||+|
T Consensus 136 ~~~-----LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vs-Hdl~~~~~~~d~i 207 (538)
T 3ozx_A 136 ANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVD-HDLIVLDYLTDLI 207 (538)
T ss_dssp GGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEEC-SCHHHHHHHCSEE
T ss_pred hhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEE-eChHHHHhhCCEE
Confidence 765 999999999999999999999999999999999999999999999964 78888865 4566888999999
Q ss_pred EEEcCCeE
Q 003389 415 ILLSEGQI 422 (824)
Q Consensus 415 ilL~~G~i 422 (824)
++|.+|..
T Consensus 208 ~vl~~~~~ 215 (538)
T 3ozx_A 208 HIIYGESS 215 (538)
T ss_dssp EEEEEETT
T ss_pred EEecCCcc
Confidence 99987643
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-28 Score=289.41 Aligned_cols=194 Identities=22% Similarity=0.261 Sum_probs=140.9
Q ss_pred CcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE-----------eeCCcccCCCCC---C
Q 003389 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI-----------TYCGHELNEFVP---Q 244 (824)
Q Consensus 179 ~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I-----------~~nG~~~~~~~~---~ 244 (824)
.+......|++++ .+++||+++|+||||||||||||+|+|+++|+ +|+| .+.|.++..+.. .
T Consensus 86 ~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (608)
T 3j16_B 86 RYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161 (608)
T ss_dssp ECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred EECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceEecccchhhhhheecChhhhhhhhHHHH
Confidence 3333344677777 68999999999999999999999999999997 8988 344443321100 0
Q ss_pred ce--EEEEecCCCCC------CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhh
Q 003389 245 RT--CAYISQHDLHH------GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316 (824)
Q Consensus 245 ~~--i~yv~Q~d~~~------~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~ 316 (824)
+. ..+.+|....+ +..++.+.+... ......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-----------------------------------------~~~~~~ 200 (608)
T 3j16_B 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-----------------------------------------MEKSPE 200 (608)
T ss_dssp TSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-----------------------------------------CCSCHH
T ss_pred HhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-----------------------------------------hhhHHH
Confidence 11 12233321110 111233322110 011123
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tv 396 (824)
.++++++.+||.+..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|+
T Consensus 201 ~~~~~l~~~gl~~~~~~~~~~-----LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tv 274 (608)
T 3j16_B 201 DVKRYIKILQLENVLKRDIEK-----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYV 274 (608)
T ss_dssp HHHHHHHHHTCTGGGGSCTTT-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEE
T ss_pred HHHHHHHHcCCcchhCCChHH-----CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 467789999999988888765 999999999999999999999999999999999999999999999976 47887
Q ss_pred EEEEccCchhHHhhcCeEEEEcCCeEEE
Q 003389 397 IVALLQPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 397 Iisi~q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|++. |...++..+||+|++|.+|..+|
T Consensus 275 i~vt-Hdl~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 275 ICVE-HDLSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp EEEC-SCHHHHHHHCSEEEEEESCTTTE
T ss_pred EEEe-CCHHHHHHhCCEEEEEeCCcccc
Confidence 7764 56678899999999998876544
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=4e-26 Score=277.83 Aligned_cols=108 Identities=26% Similarity=0.334 Sum_probs=90.5
Q ss_pred HHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 318 ~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
+..+|+.+||.... +| +....|||||||||.||++|+.+| ++|||||||+|||+.+...+++.|+++++ .|.
T Consensus 785 ~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~ 859 (916)
T 3pih_A 785 TLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGN 859 (916)
T ss_dssp HHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC
Confidence 45688899996421 22 234569999999999999999865 79999999999999999999999999986 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|+|++.|+. . +...||+|++| ++|+|++.|+++++.
T Consensus 860 TVIvI~HdL-~-~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIVIEHNL-D-VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEECCCH-H-HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEEEeCCH-H-HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 988876654 3 44669999999 899999999999985
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=7.3e-27 Score=282.51 Aligned_cols=106 Identities=26% Similarity=0.274 Sum_probs=92.0
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
..+|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+|||+.+..++++.|+++++ .|.
T Consensus 826 ~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 899 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGD 899 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999986 5666665 49999999999999999764 99999999999999999999999999986 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|||++.|+ ..+ ...||+|++| ++|++++.|+++++.
T Consensus 900 TVIvisHd-l~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHN-LDV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCC-HHH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCC-HHH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 98887665 444 4689999999 789999999998875
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=3e-26 Score=278.14 Aligned_cols=107 Identities=26% Similarity=0.272 Sum_probs=92.0
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHHHHHHHcCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 003389 319 DYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTTGEMLVGTA---NVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (824)
Q Consensus 319 ~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p---~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~ 394 (824)
..+|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+|||+.+...|++.|+++++ .|.
T Consensus 844 ~~~L~~lgL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~ 917 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAP-----TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGN 917 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGG-----GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcCCCcccccCccc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCC
Confidence 45789999976 5566555 59999999999999999865 99999999999999999999999999986 488
Q ss_pred EEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 003389 395 TMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~~ 433 (824)
|||++.|+ ..++ ..||+|++| ++|++++.|+++++..
T Consensus 918 TVIvisHd-l~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 918 TVIVIEHN-LDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEECCC-HHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEEEcCC-HHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 98887665 4444 789999999 7899999999998753
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4e-29 Score=285.39 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=145.6
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-e-EeeCCcccCCCCCCceEEEEecCCC---CCCCCCH
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-K-ITYCGHELNEFVPQRTCAYISQHDL---HHGEMTV 262 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~-I~~nG~~~~~~~~~~~i~yv~Q~d~---~~~~lTV 262 (824)
.++|+.+++|++++|+||||||||||+|+|+|++.|+ +| + |.+||. +++.++|++|+.. +.+.+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 4899999999999999999999999999999999886 99 9 999982 2567899999874 4556899
Q ss_pred HHHHHHhhhhc-CCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 263 RETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 263 ~E~L~f~a~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+||+ |+.... +... ...+..+++.+||++..+ + .
T Consensus 200 ~eni-~~~~~~~~~~~-------------------------------------~~~~~~ll~~~gl~~~~~--~-----~ 234 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL-------------------------------------LHNKQPMVKNFGLERINE--N-----K 234 (460)
T ss_dssp TCTT-CSCBCBSSCCS-------------------------------------SCCBCCEECCCCSSSGGG--C-----H
T ss_pred hhhh-cccccccCcch-------------------------------------HHHHHHHHHHhCCCcccc--h-----h
Confidence 9998 754321 1000 001123566788877665 3 3
Q ss_pred CCCHHHHHHHHHHHH--HHcCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch-----hHHh
Q 003389 342 GISGGQKKRVTTGEM--LVGTANV----LYMDE-ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP-----ETYD 409 (824)
Q Consensus 342 gLSGGqrqRvsIA~a--Lv~~p~i----LlLDE-PTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~-----e~~~ 409 (824)
.|||||||||+||++ |+.+|++ ||||| ||+|||+. ...+.+.+++ .+.|+|+++|++.+ ++.+
T Consensus 235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~ 309 (460)
T 2npi_A 235 DLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKT 309 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHH
Confidence 599999999999999 9999999 99999 99999999 4444444443 46788888887652 5558
Q ss_pred hcCe-----EEEEc-CCeEEEecChhhHH
Q 003389 410 LFDD-----IILLS-EGQIVYQGPRDNVL 432 (824)
Q Consensus 410 lfD~-----iilL~-~G~iv~~G~~~~~~ 432 (824)
+||+ |++|. +|+++ .|+++++.
T Consensus 310 ~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 310 FGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred hcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99999 99987653
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.94 E-value=2.3e-26 Score=277.72 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=93.1
Q ss_pred hHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 003389 317 VTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGT---ANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (824)
Q Consensus 317 ~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~---p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~ 392 (824)
.+..+|+.+||... .+..+. .|||||||||.||++|+.+ |++|||||||+|||+.+..+|.+.|+++++ .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPAT-----ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGG-----GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCcc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 35678999999763 455554 5999999999999999996 799999999999999999999999999986 4
Q ss_pred CcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 393 DVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 393 ~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
|.|||++.|+ ..++ ..||+|++| ++|++++.|+++++.
T Consensus 783 G~tVIvisHd-l~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 GNTVIAVEHK-MQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TCEEEEECCC-HHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEEcCC-HHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 8888887654 5566 889999999 799999999998874
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.93 E-value=1.9e-25 Score=251.54 Aligned_cols=236 Identities=15% Similarity=0.124 Sum_probs=148.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----------------------------------CCCc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----------------------------------LRAS 228 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~-----------------------------------~~~s 228 (824)
..+|+++|+.+++| +++|+|||||||||||++|+++..+. ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45899999999999 99999999999999999998776421 0127
Q ss_pred ceEeeCCcccCCCCC----CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCc-h----hhHHHHHhHHHHHhcCCCCCh-
Q 003389 229 GKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG-T----RYELLAELSRREKQAGIKPDP- 298 (824)
Q Consensus 229 G~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~-~----~~~~~~~~~~~e~~~~i~~~~- 298 (824)
|++.+||++++.... ...+++++|++.++.. +..+...|--...... . .+..+....+.... ..+...
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~-l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLER-LQASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH-C------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-HHhhhhh
Confidence 889999998763211 2348999998765433 5554444422111000 0 00001111000000 000000
Q ss_pred ----------hHHHHHH----HHHH-------hccchhhhHHHHHHHcCCCccc----------------cc---cccC-
Q 003389 299 ----------EIDAFMK----AVAV-------AGQETSLVTDYVLKILGLDICA----------------DT---MVGD- 337 (824)
Q Consensus 299 ----------~~~~~~~----~~~~-------~~~~~~~~~~~iL~~lgL~~~~----------------dt---~vg~- 337 (824)
..+...+ .... ....-...+...++.++++... +. .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0000000 0000 0001112345566677765411 00 1110
Q ss_pred -----ccCCC-CCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 338 -----EMRRG-ISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 338 -----~~~rg-LSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
...+. +||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++++ +.|+|+++|++ ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~vi~itH~~--~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEeCcH--HHHh
Confidence 11122 6999999999999999999 99999999999999999999999999973 78999987764 5678
Q ss_pred hcCeEEEE----cCCeEEEec
Q 003389 410 LFDDIILL----SEGQIVYQG 426 (824)
Q Consensus 410 lfD~iilL----~~G~iv~~G 426 (824)
.||++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987653
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=2.7e-25 Score=228.37 Aligned_cols=149 Identities=17% Similarity=0.201 Sum_probs=101.3
Q ss_pred cCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC--CCCCCceEEEEecCCC
Q 003389 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN--EFVPQRTCAYISQHDL 255 (824)
Q Consensus 178 ~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~--~~~~~~~i~yv~Q~d~ 255 (824)
++..+++.+|+|| ++|++++|+|||||||||||++|+|+ +|+ +|+|.. .++. ....++.++|++|++
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~--~~~~~~~~~~~~~ig~v~q~~- 75 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSR--IILTRPAVEAGEKLGFLPGTL- 75 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSE--EEEEECSCCTTCCCCSSCC---
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeee--EEecCCchhhhcceEEecCCH-
Confidence 3444556799996 89999999999999999999999999 886 898843 2221 112246799999974
Q ss_pred CCCCCCHHHHH-HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 256 HHGEMTVRETL-DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 256 ~~~~lTV~E~L-~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
+||+ .+..... ..+. .. .....++++++. |
T Consensus 76 -------~enl~~~~~~~~---------~~~~------~~------------------~~~~~~~~~l~~-g-------- 106 (208)
T 3b85_A 76 -------NEKIDPYLRPLH---------DALR------DM------------------VEPEVIPKLMEA-G-------- 106 (208)
T ss_dssp -----------CTTTHHHH---------HHHT------TT------------------SCTTHHHHHHHT-T--------
T ss_pred -------HHHHHHHHHHHH---------HHHH------Hh------------------ccHHHHHHHHHh-C--------
Confidence 6666 3421000 0000 00 001123334443 2
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
+ ||||||+|||+|+.+|++|||||||+| ++..+.+.|+++ + .+.|+| ++|+.
T Consensus 107 --------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 107 --------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp --------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred --------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 2 999999999999999999999999999 888999999988 4 478888 77654
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=3.4e-22 Score=222.28 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=73.8
Q ss_pred cCCCCCHHHHHHHHHHHHHH------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 339 MRRGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.+..|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|+++.+ .|.|+|++.|+.. ..+.||
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 44569999999999999999 79999999999999999999999999999975 5889999877653 378899
Q ss_pred eEEEEcCCeEEE
Q 003389 413 DIILLSEGQIVY 424 (824)
Q Consensus 413 ~iilL~~G~iv~ 424 (824)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=1.3e-22 Score=221.69 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=70.7
Q ss_pred CCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE--
Q 003389 341 RGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI-- 414 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i-- 414 (824)
..|||||||||+||++|+ .+|++|+|||||++||+.....+.+.|++++ .+.++|++.|++ ++.+.||++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEE
Confidence 469999999999999997 6899999999999999999999999999985 367888887763 578899987
Q ss_pred EEEcCCeE-EEecChhh
Q 003389 415 ILLSEGQI-VYQGPRDN 430 (824)
Q Consensus 415 ilL~~G~i-v~~G~~~~ 430 (824)
++|.+|.. +.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 88888754 33344443
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=1.4e-24 Score=244.06 Aligned_cols=172 Identities=12% Similarity=0.098 Sum_probs=132.4
Q ss_pred cccccceeeEEeCCe--------------------EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC
Q 003389 184 VRILKDVSGIVKPSR--------------------MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge--------------------~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~ 243 (824)
+.+|+|||+.|++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 468999999999999 99999999999999999999999987 999999997653
Q ss_pred CceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHH
Q 003389 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (824)
Q Consensus 244 ~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 323 (824)
+ .+|++|++ .++.+|+.||+.++.. ...++++++
T Consensus 109 ~--~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 M--ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp C--CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred e--eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899974 5778899888754310 012455778
Q ss_pred HcCCCccccccccCccCCCCCHH--HHHHHHHHHHHHc----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 003389 324 ILGLDICADTMVGDEMRRGISGG--QKKRVTTGEMLVG----------TANVLYMDEISTGLDSSTTFQICKFLKQMVH- 390 (824)
Q Consensus 324 ~lgL~~~~dt~vg~~~~rgLSGG--qrqRvsIA~aLv~----------~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~- 390 (824)
.++|.+.. ..+ . +||| ||||+.||++|+. +|++++|||||+|||+.++.++.+.|+++.+
T Consensus 143 ~~~L~~~~-~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887642 222 2 9999 9999999999999 9999999999999999999999999999852
Q ss_pred ---hC----CcEEEEEEccCch-hHHhhcCeEE
Q 003389 391 ---IL----DVTMIVALLQPAP-ETYDLFDDII 415 (824)
Q Consensus 391 ---~~----~~tvIisi~q~~~-e~~~lfD~ii 415 (824)
+. ..+++++.|.... .+.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 22 2455566554332 2666666653
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=4.6e-25 Score=238.71 Aligned_cols=169 Identities=13% Similarity=0.167 Sum_probs=122.5
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEE
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv 250 (824)
+...++...+. .++|+|||+.|++|++++|+||||||||||+++|+|++ +|+|. +|+
T Consensus 102 i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~---------------~~v 158 (305)
T 2v9p_A 102 FNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL---------------SFA 158 (305)
T ss_dssp HHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE---------------CGG
T ss_pred EEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE---------------EEe
Confidence 45556555443 56999999999999999999999999999999999997 68883 455
Q ss_pred ecCCCCCCCCCHHH-HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 251 SQHDLHHGEMTVRE-TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 251 ~Q~d~~~~~lTV~E-~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
+|++.++. .|++| |+.|.... . . .+...++.+ |++
T Consensus 159 ~q~~~lf~-~ti~~~ni~~~~~~---~---------------------~------------------~~~~~i~~~-L~~ 194 (305)
T 2v9p_A 159 NHKSHFWL-ASLADTRAALVDDA---T---------------------H------------------ACWRYFDTY-LRN 194 (305)
T ss_dssp GTTSGGGG-GGGTTCSCEEEEEE---C---------------------H------------------HHHHHHHHT-TTG
T ss_pred cCcccccc-ccHHHHhhccCccc---c---------------------H------------------HHHHHHHHH-hHc
Confidence 67655554 47776 77653110 0 0 011233333 444
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHh
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~ 409 (824)
..| | ..|||||||| ||+|+.+|+||| |++||+.++..|.. + +| ..++.+
T Consensus 195 gld---g----~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH-~~~~~~ 243 (305)
T 2v9p_A 195 ALD---G----YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HS-RVQTFR 243 (305)
T ss_dssp GGG---T----CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TT-TEEEEE
T ss_pred cCC---c----cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hC-CHHHHH
Confidence 444 2 4699999999 999999999999 99999999988852 1 22 223457
Q ss_pred hcCeEEEEcCCeEEEecChhhHHHHHHHc
Q 003389 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHM 438 (824)
Q Consensus 410 lfD~iilL~~G~iv~~G~~~~~~~~f~~~ 438 (824)
.||+| +|++|++++.|+++++..+|.++
T Consensus 244 ~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 244 FEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred hCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 89999 99999999999999986666654
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=1.3e-22 Score=201.57 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS----------------TTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~----------------t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.||||||||+||++++.+|++|+|||||+|||+. ...++.+.|+++.++ |.|+|+++|.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 6999999999999999999999999999999999 568999999988775 88999887653
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=7.8e-23 Score=205.00 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=103.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---CCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~---~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~ 275 (824)
.++|+||||||||||+++|+|.+. |.++|.+..+. ..++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~--- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SK--- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ET---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hh---
Confidence 589999999999999999999984 44555443221 2246789999974 222222 10 00
Q ss_pred chhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccccCccCCCCCHHHHHHHHH
Q 003389 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEMRRGISGGQKKRVTT 353 (824)
Q Consensus 276 ~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~rgLSGGqrqRvsI 353 (824)
+.. +..+.. +..||||||||++|
T Consensus 63 --------------------------------------------------~~~~~~~~~~~-----~~~lSgG~~qr~~l 87 (178)
T 1ye8_A 63 --------------------------------------------------FFTSKKLVGSY-----GVNVQYFEELAIPI 87 (178)
T ss_dssp --------------------------------------------------TCCCSSEETTE-----EECHHHHHHHHHHH
T ss_pred --------------------------------------------------cCCcccccccc-----ccCcCHHHHHHHHH
Confidence 000 112233 34599999999999
Q ss_pred HHH-----HHcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc--cCchhHHhhcCeEEEEcCCeEEE
Q 003389 354 GEM-----LVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFDDIILLSEGQIVY 424 (824)
Q Consensus 354 A~a-----Lv~~p~iLlLDE--PTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~--q~~~e~~~lfD~iilL~~G~iv~ 424 (824)
|++ ++.+|++|+||| ||++||+.....+.+.|++ .+.|+|+++| |+.+.+..++|+ .+|+++.
T Consensus 88 a~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 88 LERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 996 999999999999 9999999999999888875 3677888887 677788888987 5567665
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=2.8e-22 Score=217.30 Aligned_cols=175 Identities=14% Similarity=0.214 Sum_probs=133.5
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------CCceEEEEecCCC-C
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-H 256 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~i~yv~Q~d~-~ 256 (824)
++++|+.+++|++++|+||||||||||++.|+|+++|. +|+|.++|.+..... .+..++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999886 899999998864321 1235899999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccccc
Q 003389 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (824)
Q Consensus 257 ~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 336 (824)
++.+||+|++.++.. .+. + ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~-~~~---------------------d---------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKE-EGY---------------------D---------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHH-TTC---------------------S---------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHH-cCC---------------------c---------------------chHHhcCCCCcchhHHHH
Confidence 888999999987531 000 0 013456788776666665
Q ss_pred CccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc--------hh
Q 003389 337 DEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PE 406 (824)
Q Consensus 337 ~~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~--------~e 406 (824)
+ || |||++||++|+.+|+ +|+|| ||+|||+... ++++.+..+.|+|+++|-+. ..
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 4 99 999999999999999 99999 9999999854 34555445888888877332 22
Q ss_pred HHhhcCeEEEEcCCeE
Q 003389 407 TYDLFDDIILLSEGQI 422 (824)
Q Consensus 407 ~~~lfD~iilL~~G~i 422 (824)
.....+.|.++..|+.
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 3345678888888864
No 74
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=6.1e-22 Score=211.33 Aligned_cols=146 Identities=14% Similarity=0.201 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchh
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~ 278 (824)
.++|+||||||||||+|+|+|...|+ +|+|.++|+++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999987 99999999987654445789999999999999999999988754321100
Q ss_pred hHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHH
Q 003389 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358 (824)
Q Consensus 279 ~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv 358 (824)
...+.. .++ ....+..++ .|||||||||++||+++
T Consensus 80 ------------------~~~i~~------------------~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 ------------------WEPIEK------------------YIN----EQYEKFLKE-----EVNIARKKRIPDTRVHC 114 (270)
T ss_dssp ------------------SHHHHH------------------HHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCE
T ss_pred ------------------HHHHHH------------------HHH----HHHHhhhHH-----hcCcccchhhhhheeee
Confidence 000111 111 122233333 49999999999999987
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
. ++|+|||+.|||+.. .+.++++.+. .++|++++.
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi~K 149 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVIAK 149 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEETT
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEEec
Confidence 6 999999999999987 4556666542 678777654
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.80 E-value=7.1e-22 Score=224.37 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=145.0
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc---ccCCC------
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEF------ 241 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~---~~~~~------ 241 (824)
+...++...+..+..+|+++ +.|.+|++++|+|||||||||||++|+|+.+++ +|.|.++|+ ++.++
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhcc
Confidence 44555655554456799999 999999999999999999999999999999887 999999998 55432
Q ss_pred --CCCceEEEEecC-CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhH
Q 003389 242 --VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVT 318 (824)
Q Consensus 242 --~~~~~i~yv~Q~-d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 318 (824)
..++.++|++|+ +..++.+||.+|+.+.++... .+ +.+
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~--------------~~--------------------~~~----- 248 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR--------------DR--------------------GQH----- 248 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH--------------TT--------------------TCE-----
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH--------------hC--------------------CCC-----
Confidence 124789999995 556778899999988653210 00 000
Q ss_pred HHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH---hCCc-
Q 003389 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH---ILDV- 394 (824)
Q Consensus 319 ~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~---~~~~- 394 (824)
++ ...|. ...+|+|| |||+|| +.+|++ |+|||+.+...+.+.++++.+ ..|.
T Consensus 249 --v~------~~ld~------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gsi 304 (438)
T 2dpy_A 249 --VL------LIMDS------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSI 304 (438)
T ss_dssp --EE------EEEEC------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEE
T ss_pred --HH------HHHHh------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcc
Confidence 00 00111 23499999 999999 888887 999999999999999999875 2253
Q ss_pred ----EEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhH
Q 003389 395 ----TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 395 ----tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
|+++..|+.. ..+||++++|.+|+++..|++.++
T Consensus 305 T~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 305 TAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp EEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 6666655544 567999999999999999987765
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=4.7e-21 Score=211.91 Aligned_cols=174 Identities=14% Similarity=0.210 Sum_probs=133.9
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------CCceEEEEecCCC-CC
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------PQRTCAYISQHDL-HH 257 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~~~~i~yv~Q~d~-~~ 257 (824)
+++|+.+++|++++|+||||||||||++.|+|++++. +|+|.++|.++.... .+..++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999999886 899999998864321 1245899999988 88
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccC
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 337 (824)
+.+||+|++.++.. .+. + ..+++.+|+.+..+..+.
T Consensus 225 p~~tv~e~l~~~~~-~~~---------------------d---------------------~~lldt~Gl~~~~~~~~~- 260 (359)
T 2og2_A 225 AATVLSKAVKRGKE-EGY---------------------D---------------------VVLCDTSGRLHTNYSLME- 260 (359)
T ss_dssp HHHHHHHHHHHHHH-TTC---------------------S---------------------EEEEECCCCSSCCHHHHH-
T ss_pred hhhhHHHHHHHHHh-CCC---------------------H---------------------HHHHHhcCCChhhhhHHH-
Confidence 88999999987531 000 0 013456777776666655
Q ss_pred ccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc--------hhH
Q 003389 338 EMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--------PET 407 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~--------~e~ 407 (824)
.|| |||+.||++|+.+|+ +|+|| ||+|||+.+.. +++.+..+.|+|+++|-+. ...
T Consensus 261 ----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~ 326 (359)
T 2og2_A 261 ----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVV 326 (359)
T ss_dssp ----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHH
T ss_pred ----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHH
Confidence 489 999999999999999 99999 99999998653 4454445888888877331 223
Q ss_pred HhhcCeEEEEcCCeE
Q 003389 408 YDLFDDIILLSEGQI 422 (824)
Q Consensus 408 ~~lfD~iilL~~G~i 422 (824)
....+.|..+..|+.
T Consensus 327 ~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 327 EELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHhCCCEEEEeCCCC
Confidence 355678888888864
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=3.7e-23 Score=211.45 Aligned_cols=178 Identities=10% Similarity=0.061 Sum_probs=113.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++| .+|++|++++|+||||||||||+|+|+|+++. +.+.+.+.+.+... ..++.++|++|+...++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 69999999999999999999999999999852 23333333322211 1235689999998778888888
Q ss_pred HHHHHhhhh------cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHH------HHHcCCCccc
Q 003389 264 ETLDFSGRC------LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV------LKILGLDICA 331 (824)
Q Consensus 264 E~L~f~a~~------~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i------L~~lgL~~~~ 331 (824)
+++.+.... ++.. +.+ .+ ..+++. ++.+|+.+..
T Consensus 83 ~~l~~~~~~~~n~~~~g~~----------~~~----------~~--------------~~~~~~~~~~~~l~~~gl~~~~ 128 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTL----------AQP----------VR--------------AAAATGVPVLIEVDLAGARAIK 128 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEE----------HHH----------HH--------------HHHHHTCCEEEECCHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCc----------HHH----------HH--------------HHHHcCCeEEEEeCHHHHHHHH
Confidence 876432211 1110 000 00 011111 2334444434
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL----DSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGL----Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~ 407 (824)
+..++ .|| +|+.+|++++|||||+|+ |+..+.++.+.++++.+..+.|+|++. |...++
T Consensus 129 ~~~~~-----~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vt-Hdl~~~ 191 (207)
T 1znw_A 129 KTMPE-----AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVN-RRLESA 191 (207)
T ss_dssp HHCTT-----SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEEC-SSHHHH
T ss_pred HhcCC-----cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEEC-CCHHHH
Confidence 44333 366 899999999999999998 788999999999999865678888875 567789
Q ss_pred HhhcCeEEEEc
Q 003389 408 YDLFDDIILLS 418 (824)
Q Consensus 408 ~~lfD~iilL~ 418 (824)
..+||+|++|.
T Consensus 192 ~~~~d~i~~l~ 202 (207)
T 1znw_A 192 CAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhc
Confidence 99999999985
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.79 E-value=2.9e-23 Score=214.46 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=107.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC----CceEEEEecCCCCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~----~~~i~yv~Q~d~~~~~ 259 (824)
..-|+|||++|++|++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ++.++|++|++..++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88999 776543222 3568999998655543
Q ss_pred CCH-HHHHHH---hhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 260 MTV-RETLDF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 260 lTV-~E~L~f---~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
++. .+++.+ ...+++. + ...++++++...+ ..+
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~--------------------~------------------~~~i~~~l~~~~~-----~il 119 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT--------------------L------------------KSEYDKAKEQNKI-----CLF 119 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE--------------------E------------------HHHHHHHHHTTCE-----EEE
T ss_pred hhhccchhhhhhcccccCCC--------------------c------------------HHHHHHHHhCCCc-----EEE
Confidence 321 111111 0111110 0 0012233333221 111
Q ss_pred cCccCCCCCHHHHHHHHH-----HHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhh
Q 003389 336 GDEMRRGISGGQKKRVTT-----GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsI-----A~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~l 410 (824)
. ..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.|++..+. .+ +.| ...
T Consensus 120 ~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~--~~----~~h-----~~~ 184 (218)
T 1z6g_A 120 E----MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE--LH----EAN-----LLN 184 (218)
T ss_dssp E----ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HH----HHT-----TSC
T ss_pred E----ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--HH----hhc-----ccC
Confidence 1 3499999999999 88999999999999999999999999999999887653 33 112 145
Q ss_pred cCeEEEEcC
Q 003389 411 FDDIILLSE 419 (824)
Q Consensus 411 fD~iilL~~ 419 (824)
||.|+++++
T Consensus 185 ~d~iiv~~~ 193 (218)
T 1z6g_A 185 FNLSIINDD 193 (218)
T ss_dssp CSEEEECSS
T ss_pred CCEEEECCC
Confidence 788877754
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.77 E-value=1.9e-18 Score=191.17 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=74.1
Q ss_pred CccCC-CCCHHHHHHHHHHHHHH---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 337 DEMRR-GISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 337 ~~~~r-gLSGGqrqRvsIA~aLv---------~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c
Confidence 33455 69999999999999999 8999999999999999999999999998763 46666554 43 3
Q ss_pred HHhhcCeEEEEcCCeEEEecChhhH
Q 003389 407 TYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 407 ~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998765
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.77 E-value=1.5e-19 Score=194.58 Aligned_cols=187 Identities=14% Similarity=0.067 Sum_probs=115.9
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-eEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.++|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 456899999999999999999999999999999999998764 57 67554433211000111111111110 11
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+.+++... .+... +....++.+++..++. .+. ...
T Consensus 94 ~~~~l~~~--------------~~~~~------------------------~~~~~~~~~l~~~~l~--i~~-----~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------IIENG------------------------KFDQWFDELFGNDTFH--LYD-----SFA 128 (296)
T ss_dssp GCHHHHHH--------------HHHHT------------------------HHHHHHHHHHSSSCEE--EEC-----CCC
T ss_pred hccccccC--------------CCCHH------------------------HHHHHHHHHhccCCEE--EEC-----CCC
Confidence 11222110 00000 0011123333222221 111 123
Q ss_pred CCCHHH-HHHHHHHHHHHcCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHHhCCcEEEEEEccC-ch-------
Q 003389 342 GISGGQ-KKRVTTGEMLVGTANVLYMDEIST---G---LDS-STTFQICKFLKQMVHILDVTMIVALLQP-AP------- 405 (824)
Q Consensus 342 gLSGGq-rqRvsIA~aLv~~p~iLlLDEPTs---G---LDs-~t~~~I~~~L~~l~~~~~~tvIisi~q~-~~------- 405 (824)
.+|.+| +||+. |+++..+|+++++||||+ + +|. ....++++.|++++++.++|||++.|.. ..
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~ 207 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEE 207 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC----------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccccc
Confidence 488998 66776 999999999999999999 5 555 6778899999999887789999987764 23
Q ss_pred -------------hHHhhcCeEEEEcCCeE
Q 003389 406 -------------ETYDLFDDIILLSEGQI 422 (824)
Q Consensus 406 -------------e~~~lfD~iilL~~G~i 422 (824)
.+.++||+|++|++|+.
T Consensus 208 ~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 208 GRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67789999999998874
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=1.5e-20 Score=204.57 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=97.5
Q ss_pred ceeeE-EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHH
Q 003389 189 DVSGI-VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 189 ~vs~~-I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
|+|.. +++|++++|+||||||||||+++|+|+++|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45543 8999999999999999999999999999874 442 458999999998888 9999986
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
+... ++.. +. .....+.++|+.++ ....+..+. .|||||
T Consensus 143 ~~~~-~g~~--------------------~~--------------~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFP--------------------ES--------------YNRRALMRFVTSVK-SGSDYACAP-----VYSHLH 181 (312)
T ss_dssp CTTC-TTSG--------------------GG--------------BCHHHHHHHHHHHH-TTCSCEEEE-----EEETTT
T ss_pred HHHh-cCCC--------------------hH--------------HHHHHHHHHHHHhC-CCcccCCcc-----cCChhh
Confidence 5321 1110 00 00112345667776 444445554 499999
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCCCCH
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTGLDS 375 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsGLDs 375 (824)
+|||++|++++.+|+|||+|||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 82
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.75 E-value=1.8e-19 Score=188.97 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=97.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
++++|+||||++++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 456999999999999999999999999999999999976 445555 1246799999985 7778999
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|++.+........... ..+.+ .+...|+.+ .+..+..+ ..
T Consensus 76 ~~~~~~~~~~~~~~~~~-----------------~~~~~---------------~~~~~L~~l--~~~~~~~~-----~~ 116 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPD-----------------AFDND---------------LMHRTLKNI--VEGKTVEV-----PT 116 (245)
T ss_dssp HHHHHHHTTCCCTTSGG-----------------GBCHH---------------HHHHHHHHH--HTTCCEEE-----CC
T ss_pred hHhhhhhccCCCCCCcc-----------------cccHH---------------HHHHHHHHH--HCCCCeec-----cc
Confidence 99987754322111000 00001 111223322 33444444 35
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+++++.|.
T Consensus 117 ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~ 164 (245)
T 2jeo_A 117 YDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDS 164 (245)
T ss_dssp EETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCH
T ss_pred ccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCH
Confidence 99999999988 5788899999999998888753 2222 36788877654
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.75 E-value=1.8e-19 Score=197.71 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=104.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++++++|+.+++|++++|+|||||||||||++|+|+++|+ +|.|+++|.+..... .++.++
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~--------------- 220 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQ--------------- 220 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEE---------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEE---------------
Confidence 4899999999999999999999999999999999999986 999999986411000 000000
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
.+ .+
T Consensus 221 ----------------------------------------------------------------------~~-----~g- 224 (330)
T 2pt7_A 221 ----------------------------------------------------------------------LF-----FG- 224 (330)
T ss_dssp ----------------------------------------------------------------------EE-----CB-
T ss_pred ----------------------------------------------------------------------EE-----eC-
Confidence 00 01
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeE
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~i 422 (824)
|||+||++||++|..+|++|++||||+. ++.+.|+.+.. .+.|+++++|.+. +.+.+||+++|.+|+.
T Consensus 225 -gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 -GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp -TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred -CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 7999999999999999999999999982 35667777653 2447888888765 7788999999988853
No 84
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.74 E-value=4e-18 Score=197.89 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=68.9
Q ss_pred CCCC-CHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 340 RRGI-SGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 340 ~rgL-SGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|+++++ +.|||+++|++ ++...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4567 999999999999999999 99999999999999999999999999986 68998887764 45668999999
Q ss_pred EcCC
Q 003389 417 LSEG 420 (824)
Q Consensus 417 L~~G 420 (824)
|.+|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=2.9e-17 Score=180.71 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=67.2
Q ss_pred cCCCCCHHHHH------HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 339 MRRGISGGQKK------RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 339 ~~rgLSGGqrq------RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
.+..||||||| |+++|++|+.+|++|||||||+|||+.....+++.|+++.+. +.|+|++.|+ .++.+.||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~--~~~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHD--EELKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESC--GGGGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECh--HHHHHhCC
Confidence 34569999999 667788888999999999999999999999999999998764 7788888776 46789999
Q ss_pred eEEEEc
Q 003389 413 DIILLS 418 (824)
Q Consensus 413 ~iilL~ 418 (824)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999995
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=1.1e-17 Score=194.50 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=116.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhh
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG 270 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a 270 (824)
++.+++|++++|+||||||||||+++++|...+ .|+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 679999999999999999999999999998765 343 22455666521 01222110
Q ss_pred hhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHH
Q 003389 271 RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350 (824)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqR 350 (824)
+ .+ + + .+. +...|+....+..+ ..|||||+||
T Consensus 330 ~-~g-------------------~----~------------------~~~-~~~~g~~~~~~~~p-----~~LS~g~~q~ 361 (525)
T 1tf7_A 330 S-WG-------------------M----D------------------FEE-MERQNLLKIVCAYP-----ESAGLEDHLQ 361 (525)
T ss_dssp T-TS-------------------C----C------------------HHH-HHHTTSEEECCCCG-----GGSCHHHHHH
T ss_pred H-cC-------------------C----C------------------HHH-HHhCCCEEEEEecc-----ccCCHHHHHH
Confidence 0 00 0 0 011 12345555555444 4599999999
Q ss_pred HHHHHHHHcCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHHhCCcEEEEEEccCc---------hhHHhhcCeEEE
Q 003389 351 VTTGEMLVGTANVLYMDEISTGLDSS-----TTFQICKFLKQMVHILDVTMIVALLQPA---------PETYDLFDDIIL 416 (824)
Q Consensus 351 vsIA~aLv~~p~iLlLDEPTsGLDs~-----t~~~I~~~L~~l~~~~~~tvIisi~q~~---------~e~~~lfD~iil 416 (824)
+.+|+++..+|++|++| ||+|||.. .+..+.+.++.+++ .|.|+|++.|+.. ..+..+||+|++
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~ 439 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIIL 439 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEE
Confidence 99999999999999999 99999999 99999999998875 5899999888762 456778999999
Q ss_pred EcCCe
Q 003389 417 LSEGQ 421 (824)
Q Consensus 417 L~~G~ 421 (824)
|.+|+
T Consensus 440 L~~ge 444 (525)
T 1tf7_A 440 LQYVE 444 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99887
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.71 E-value=1e-17 Score=204.06 Aligned_cols=169 Identities=24% Similarity=0.336 Sum_probs=123.0
Q ss_pred HHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHh
Q 003389 212 TLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291 (824)
Q Consensus 212 TLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~ 291 (824)
|...|..+++++. .|+|+++|+++.++ ..+||.|++.|.....-........
T Consensus 383 ~C~~C~g~rl~~~---~~~V~i~G~~i~~~----------------~~~~v~~~l~~~~~~~l~~~~~~~~--------- 434 (916)
T 3pih_A 383 TCSVCGGRRLNRE---ALSVKINGLNIHEF----------------TELSISEELEFLKNLNLTEREREIV--------- 434 (916)
T ss_dssp ECTTTCSCCBCTT---GGGEEETTEEHHHH----------------HHSBHHHHHHHHHSCCCCTTTTTTH---------
T ss_pred cchhcccccCChH---hcCcEECCccHHHh----------------hhCCHHHHHHHHHhccCcHHHHHHH---------
Confidence 4455666777776 89999999887542 3468999988743221100000000
Q ss_pred cCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCCc--EeEEeC
Q 003389 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDE 368 (824)
Q Consensus 292 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~--iLlLDE 368 (824)
....+. .......|..+||... .++.++ .|||||||||.||++|+.+|+ +|+|||
T Consensus 435 ---------~~~~~~--------~~~~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDE 492 (916)
T 3pih_A 435 ---------GELLKE--------IEKRLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDE 492 (916)
T ss_dssp ---------HHHHHH--------HHHHHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred ---------HhhHHH--------HHHHHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEEC
Confidence 000000 0112346778999754 566665 499999999999999999877 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 003389 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 369 PTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~~ 433 (824)
||+|||+.....+++.|+++.+ .|.|+|++.|+ . +....||+|++| ++|++++.|+++++..
T Consensus 493 PT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd-~-~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 493 PTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHD-E-EVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp TTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCC-H-HHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-H-HHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999999999999999975 48899887665 3 345669999999 8999999999998753
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=5e-19 Score=195.23 Aligned_cols=192 Identities=14% Similarity=0.125 Sum_probs=129.9
Q ss_pred hhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC---------
Q 003389 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--------- 241 (824)
Q Consensus 171 l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~--------- 241 (824)
++..++.+.+..+..+|+++ +.|.+|++++|+||||||||||+++|+|..+++ .|.|.+.|++..+.
T Consensus 46 i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 46 LLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp TTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCH
T ss_pred eeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhh
Confidence 34445554444456799999 999999999999999999999999999999987 89999998652111
Q ss_pred -CCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHH
Q 003389 242 -VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320 (824)
Q Consensus 242 -~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (824)
..++.+.+++|.+. ...+.+.-... +.. ..+
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~~----------------------------------~~~--------~ae- 153 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAFT----------------------------------ATT--------IAE- 153 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHHH----------------------------------HHH--------HHH-
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHHH----------------------------------HHH--------HHH-
Confidence 12356788887532 22222211100 000 000
Q ss_pred HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----
Q 003389 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-ILDV----- 394 (824)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~-~~~~----- 394 (824)
.+...| .+..+--+.+..+|+|| |||++| +.+|++ |+|||+....++.+.++++.+ ..|.
T Consensus 154 ~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~ 219 (347)
T 2obl_A 154 YFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIY 219 (347)
T ss_dssp HHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEE
T ss_pred HHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEE
Confidence 000001 01000001233599999 899999 577777 999999999999999999864 3465
Q ss_pred EEEEEEccCchhHHhhcCeEEEEcCCeEEEecChhhH
Q 003389 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431 (824)
Q Consensus 395 tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~~~~ 431 (824)
|+++..|+ .. ..+||++++|.+|+++..|+.++.
T Consensus 220 tVl~~thd-l~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 220 TVLLESDN-VN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp EEECCSSC-CC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred EEEEeCCC-CC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 56665544 33 467999999999999999987765
No 89
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=1.8e-17 Score=202.71 Aligned_cols=89 Identities=13% Similarity=0.199 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHH--HcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEE
Q 003389 341 RGISGGQKKRVTTGEML--VGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aL--v~~p~iLlLDEPTsGLDs~t~~~I-~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL 417 (824)
+++|+|+++++.+|++| +.+|+++||||||+|||+.....+ ...++.+.+..|.++|+++|. .++.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhccccee
Confidence 45899999999999988 999999999999999999999888 566777776458899998876 3677899999999
Q ss_pred cCCeEEEecChhhH
Q 003389 418 SEGQIVYQGPRDNV 431 (824)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (824)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876654
No 90
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=3.5e-18 Score=175.46 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=97.5
Q ss_pred ccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC----CCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL----RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 186 IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~----~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
.|+.+- +-|++|++++|+||||||||||+++|+|...+.. ...|.|++++.+.. ..+.+++++|+..+.+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~- 88 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 88 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-
Confidence 444333 6899999999999999999999999999654420 01335555554310 01223333333222222
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||+.+.
T Consensus 89 ~~~~~~~~~----------------------------------------------------------------------- 97 (231)
T 4a74_A 89 EVLKHIYVA----------------------------------------------------------------------- 97 (231)
T ss_dssp HHHHTEEEE-----------------------------------------------------------------------
T ss_pred HHhhcEEEE-----------------------------------------------------------------------
Confidence 333332221
Q ss_pred CCCCHHH-HHHHHHHHHHHc-------CCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEE
Q 003389 341 RGISGGQ-KKRVTTGEMLVG-------TANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 341 rgLSGGq-rqRvsIA~aLv~-------~p~iLlLDEPTsGLDs~t------------~~~I~~~L~~l~~~~~~tvIisi 400 (824)
+..++++ ++.+..++.++. +|+++++||||+++|+.. ..++++.|+++++..+.|+|++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vt 177 (231)
T 4a74_A 98 RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177 (231)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 1123332 233444554444 899999999999999841 23788888888876789998877
Q ss_pred ccCc---hhHHhhcCeEEEEcCCe
Q 003389 401 LQPA---PETYDLFDDIILLSEGQ 421 (824)
Q Consensus 401 ~q~~---~e~~~lfD~iilL~~G~ 421 (824)
|... ..+...+|++++|++|+
T Consensus 178 H~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 178 QVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ECC---------CCSEEEEEEECT
T ss_pred ecccCcchhhHhhceEEEEEEecC
Confidence 6322 23677899999998753
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.68 E-value=3.1e-19 Score=207.57 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=116.5
Q ss_pred ccccccccceee-EEeCCeEEEEEcCCCCcHHHHHHH--HhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCC
Q 003389 181 KRSVRILKDVSG-IVKPSRMTLLLGPPGAGKTTLMLA--LAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDL 255 (824)
Q Consensus 181 ~~~~~IL~~vs~-~I~~Ge~~aLlGpnGSGKSTLL~~--LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~ 255 (824)
..+.++|++||+ .|++|++++|+||||||||||+++ ++|+++|+ +|.|+++|.+..... ..+.+||++|+..
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 345679999999 999999999999999999999999 78999876 899999998732111 1245788888632
Q ss_pred CCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccc
Q 003389 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (824)
Q Consensus 256 ~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 335 (824)
..+ ++.+ . ... ++.+ ..++++.++|.+..+..+
T Consensus 99 ~~~------~l~~-~---~~~-------------------~~~~------------------~~~~l~~~~l~~~~~~~~ 131 (525)
T 1tf7_A 99 DEG------KLFI-L---DAS-------------------PDPE------------------GQEVVGGFDLSALIERIN 131 (525)
T ss_dssp HTT------SEEE-E---ECC-------------------CCSS------------------CCSCCSSHHHHHHHHHHH
T ss_pred ccC------cEEE-E---ecC-------------------cccc------------------hhhhhcccCHHHHHHHHH
Confidence 111 1100 0 000 0000 000111222222222222
Q ss_pred cCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCC-----CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh----
Q 003389 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST-----GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE---- 406 (824)
Q Consensus 336 g~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTs-----GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e---- 406 (824)
. .||||| |+++++||||+ +||+..+.++.+.++++++ .|+|+|++.|.....
T Consensus 132 ~-----~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~ 192 (525)
T 1tf7_A 132 Y-----AIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIA 192 (525)
T ss_dssp H-----HHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSS
T ss_pred H-----HHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccc
Confidence 2 266664 77999999998 5699999999999999987 489999988776532
Q ss_pred ----HHhhcCeEEEEcCCe
Q 003389 407 ----TYDLFDDIILLSEGQ 421 (824)
Q Consensus 407 ----~~~lfD~iilL~~G~ 421 (824)
...+||+|++|++|+
T Consensus 193 ~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 193 RYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTSCHHHHCSEEEEEEEEC
T ss_pred cccceeeeeeEEEEEEEEc
Confidence 345699999999843
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.67 E-value=2.2e-16 Score=191.37 Aligned_cols=104 Identities=27% Similarity=0.373 Sum_probs=90.7
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|+.+||... .|+.+++ |||||||||.||++|..+| ++|+|||||+|||+.....+++.|+++.+ .|.|||
T Consensus 487 ~L~~vGL~~l~ldR~~~t-----LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 560 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLI 560 (972)
T ss_dssp HHHHHTCTTSBSSSBGGG-----CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEE
T ss_pred HhhhCCCCccccCCcccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 5789999864 6777664 9999999999999999984 99999999999999999999999999975 688998
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|.. +..+.||+|++| .+|++++.|+++++.
T Consensus 561 vVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 561 VVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 876653 345689999999 799999999998764
No 93
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.66 E-value=6.5e-18 Score=208.96 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=111.4
Q ss_pred ccccccceeeEEeC-------CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEE-EEecCC
Q 003389 183 SVRILKDVSGIVKP-------SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCA-YISQHD 254 (824)
Q Consensus 183 ~~~IL~~vs~~I~~-------Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~-yv~Q~d 254 (824)
+..|++||++.+++ |++++|+||||||||||||+| |++.+ ..++| ||||+.
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~ 826 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEV 826 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSE
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCc
Confidence 35699999999987 999999999999999999999 88753 11234 888864
Q ss_pred CCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcccccc
Q 003389 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (824)
Q Consensus 255 ~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 334 (824)
. .+||.|++.. + +|+.+..+.
T Consensus 827 ~---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~~- 847 (1022)
T 2o8b_B 827 C---RLTPIDRVFT--R-----------------------------------------------------LGASDRIMS- 847 (1022)
T ss_dssp E---EECCCSBEEE--E-----------------------------------------------------CC--------
T ss_pred C---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHhh-
Confidence 2 4455554411 0 111110000
Q ss_pred ccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 335 vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~-~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
....+|++++ ++++|++++++|+++|||||++|+|+... ..+...|+.+++..+.++|+++|. ...+...+|+
T Consensus 848 ----~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~-~el~~~~~d~ 921 (1022)
T 2o8b_B 848 ----GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY-HSLVEDYSQN 921 (1022)
T ss_dssp ------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC-HHHHHHTSSC
T ss_pred ----chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC-HHHHHHhCCc
Confidence 0123666655 59999999999999999999999999885 556888888876557888887665 4566778999
Q ss_pred EEEEcCCeEE--EecChh
Q 003389 414 IILLSEGQIV--YQGPRD 429 (824)
Q Consensus 414 iilL~~G~iv--~~G~~~ 429 (824)
+.++ +|++. +.|+++
T Consensus 922 ~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 922 VAVR-LGHMACMVENECE 938 (1022)
T ss_dssp SSEE-EEEEEEC------
T ss_pred ceee-cCeEEEEEecCcc
Confidence 9887 58887 556543
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.65 E-value=3.5e-17 Score=173.69 Aligned_cols=133 Identities=15% Similarity=0.213 Sum_probs=98.3
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
++|+++| +++|++++|+|||||||||||++|+|+++|. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 5899999 8999999999999999999999999998762 279999999875321 12222222221
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 112211 012
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
|++|+++|..+|+++++|||| |+.+...++ +. +. .|.++++++|... ..+.+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 998866544 33 33 4889888887754 6788999888754
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.65 E-value=1.4e-17 Score=173.11 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=100.3
Q ss_pred cccce-eeEEeCCeEEEEEcCCCCcHHHHHHHHh--cCcCCCCCCcceEeeCCcccCCCCC--CceEEEEecCCCCCCCC
Q 003389 186 ILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALA--GKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEM 260 (824)
Q Consensus 186 IL~~v-s~~I~~Ge~~aLlGpnGSGKSTLL~~La--G~l~~~~~~sG~I~~nG~~~~~~~~--~~~i~yv~Q~d~~~~~l 260 (824)
.|+++ .+-|++|++++|+||||||||||+++|+ |...+. +|.+.+++........ .+.++|++|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 45554 3589999999999999999999999999 663443 6667776654221100 12234444432222222
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
++.++....... ... +. ... .
T Consensus 95 ~~~~~~~~~~~~--------------------------------------------~~~---~~-------~~~-----~ 115 (251)
T 2ehv_A 95 AIVDGVSSVVGL--------------------------------------------PSE---EK-------FVL-----E 115 (251)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEEcccccccc--------------------------------------------ccc---cc-------eec-----c
Confidence 222221110000 000 00 000 0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCC-----HHHHHHHHHHHHHHHHhCCcEEEEEEccCchhH--------
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD-----SSTTFQICKFLKQMVHILDVTMIVALLQPAPET-------- 407 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLD-----s~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~-------- 407 (824)
...+-++..+......-..+|+++++||||++|| ...+..+.+.++.+.+ .|+|+|++.|... ++
T Consensus 116 ~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~-~~~~~~~~~~ 193 (251)
T 2ehv_A 116 DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPD-PQHGKLSRYG 193 (251)
T ss_dssp --CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSS
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCC-CCcccccccC
Confidence 1133344444444444567999999999999998 6777778888988875 4899999876654 44
Q ss_pred -Hhhc-CeEEEEc
Q 003389 408 -YDLF-DDIILLS 418 (824)
Q Consensus 408 -~~lf-D~iilL~ 418 (824)
..+| |+|++|+
T Consensus 194 i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 194 IEEFIARGVIVLD 206 (251)
T ss_dssp CGGGGCSEEEEEE
T ss_pred hhhEeeeEEEEEe
Confidence 5788 9999995
No 96
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.65 E-value=3.6e-16 Score=189.11 Aligned_cols=104 Identities=24% Similarity=0.309 Sum_probs=91.0
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|+.+||... .++.+. .|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|+++.+ .|.|+|
T Consensus 362 ~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVI 435 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLF 435 (842)
T ss_dssp HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEE
T ss_pred HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEE
Confidence 5789999864 676665 49999999999999999999 59999999999999999999999999975 588988
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~ 432 (824)
++.|.. ++.+.||+|++| .+|++++.|+++++.
T Consensus 436 vVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 436 VVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp EECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred EEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 876554 366789999999 799999999998764
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.64 E-value=1.3e-18 Score=177.40 Aligned_cols=145 Identities=16% Similarity=0.099 Sum_probs=108.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCC--CCCCHHHHHHHhhh
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMTVRETLDFSGR 271 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~--~~lTV~E~L~f~a~ 271 (824)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999998742 478999988776 56899988765321
Q ss_pred hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH----
Q 003389 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ---- 347 (824)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq---- 347 (824)
..+. .....+..+++.+++.+..+.++. .+|+||
T Consensus 61 ~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~-----~~s~g~~~~~ 98 (211)
T 3asz_A 61 HPDA-------------------------------------FDLALYLEHAQALLRGLPVEMPVY-----DFRAYTRSPR 98 (211)
T ss_dssp SGGG-------------------------------------BCHHHHHHHHHHHHTTCCEEECCE-----ETTTTEECSS
T ss_pred Chhh-------------------------------------hhHHHHHHHHHHHHcCCCcCCCcc-----cCcccCCCCC
Confidence 0000 001123345667777665554443 488886
Q ss_pred HHHHHHHHHHHcCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 348 KKRVTTGEMLVGTANVLYMDEISTG-------LDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEPTsG-------LDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
+||++++++++.+|.++++||||++ ||+....++.+.+++..+..|.|++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999999988755457787766665
No 98
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.62 E-value=3.8e-17 Score=180.52 Aligned_cols=171 Identities=18% Similarity=0.151 Sum_probs=105.6
Q ss_pred cccccce-eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCC-CCCcce-EeeCCcccCCCCCCceEEEEecCCCCCC
Q 003389 184 VRILKDV-SGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKD-LRASGK-ITYCGHELNEFVPQRTCAYISQHDLHHG 258 (824)
Q Consensus 184 ~~IL~~v-s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l--~~~-~~~sG~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~ 258 (824)
...|+++ +|.|++|++++|+||||||||||++.|++.. +|+ ....|+ |++++.+.. ..+.+++++|...+.+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~ 193 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDP 193 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCH
Confidence 3456666 6899999999999999999999999999987 443 011367 788876531 1234555666543332
Q ss_pred CCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCc
Q 003389 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (824)
Q Consensus 259 ~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 338 (824)
. ++.+|+.+...
T Consensus 194 ~-~v~~ni~~~~~------------------------------------------------------------------- 205 (349)
T 1pzn_A 194 D-EVLKHIYVARA------------------------------------------------------------------- 205 (349)
T ss_dssp H-HHGGGEEEEEC-------------------------------------------------------------------
T ss_pred H-HHhhCEEEEec-------------------------------------------------------------------
Confidence 2 44443322110
Q ss_pred cCCCCCHHHHHHHHHHHHHH-------cCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEE
Q 003389 339 MRRGISGGQKKRVTTGEMLV-------GTANVLYMDEISTGLDSST------------TFQICKFLKQMVHILDVTMIVA 399 (824)
Q Consensus 339 ~~rgLSGGqrqRvsIA~aLv-------~~p~iLlLDEPTsGLDs~t------------~~~I~~~L~~l~~~~~~tvIis 399 (824)
.-|++|+|++.++++++ .+|+++++||||++||+.. ..++++.|+++++..++|+|++
T Consensus 206 ---~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~ 282 (349)
T 1pzn_A 206 ---FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVT 282 (349)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 01345666666666665 6899999999999999852 4677778888887778888887
Q ss_pred EccCchhHHhhcCeEEEEcCCeEEEecChh
Q 003389 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRD 429 (824)
Q Consensus 400 i~q~~~e~~~lfD~iilL~~G~iv~~G~~~ 429 (824)
.|. ....-..+++......|+++.++...
T Consensus 283 ~h~-~~~~~~~~~~~~~~~~G~~l~~~~~~ 311 (349)
T 1pzn_A 283 NQV-QARPDAFFGDPTRPIGGHILAHSATL 311 (349)
T ss_dssp EEC-C---------------CCCCCTTCSE
T ss_pred ccc-ccccccccCCccccCCcceEeecCcE
Confidence 654 33443455667777778877666543
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.62 E-value=2.2e-16 Score=192.65 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=99.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..|++|||+.+++|++++|+||||||||||||++++..-.. ..|. +.+.+. +.+..-+.++..+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g~----------~vpa~~-~~i~~~d~i~~~ig~ 725 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIGS----------YVPAEE-ATIGIVDGIFTRMGA 725 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHTC----------CBSSSE-EEEECCSEEEEEC--
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcCc----------cccchh-hhhhHHHHHHHhCCh
Confidence 356899999999999999999999999999999998653210 0111 111111 112211222222222
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.+++ . .....
T Consensus 726 ~d~l-----------------------------------------------------------------~-----~~~st 735 (918)
T 3thx_B 726 ADNI-----------------------------------------------------------------Y-----KGRST 735 (918)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred HHHH-----------------------------------------------------------------H-----HhHHH
Confidence 2211 1 11235
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQIC-KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~-~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
+|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+++..|.|+|+++|.+ ++.+++|+.
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 89999999999998 8999999999999999999999998 777777665688999988764 455666654
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.62 E-value=5.6e-17 Score=175.81 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---------CceEEEEecCCCCCCCCCHHHHH
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---------~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++|++|+....|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999986 9999999998753221 24589999998888889999999
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.++.. .+. + . .+++..|+.+..+.. ++..
T Consensus 178 ~~~~~-~~~---------------------d-----------------~----~llDt~G~~~~~~~~--------~~eL 206 (304)
T 1rj9_A 178 QAMKA-RGY---------------------D-----------------L----LFVDTAGRLHTKHNL--------MEEL 206 (304)
T ss_dssp HHHHH-HTC---------------------S-----------------E----EEECCCCCCTTCHHH--------HHHH
T ss_pred HHHHh-CCC---------------------C-----------------E----EEecCCCCCCchHHH--------HHHH
Confidence 76421 000 0 0 012223433322221 4555
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
++||++|||+++.+|+.++| +||+.+..++++.++++.+..+.|+|+++|.+
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 69999999999999994444 45555556677777777665578888887754
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.61 E-value=1.2e-16 Score=192.28 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=98.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
..+++|+|+. |++++|+||||||||||||+|+|... +. .|.+.- . .+..+++++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~vp------a--~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFVP------A--EEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCBS------S--SEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCceee------h--hccceeeHHH---hhccCCH
Confidence 4688999999 99999999999999999999999863 33 565421 1 1245677766 4455555
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55442 14
Q ss_pred CCHHHHHHHHHHHHH--HcCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 343 ISGGQKKRVTTGEML--VGTANVLYMDEI---STGLDSSTT-FQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 343 LSGGqrqRvsIA~aL--v~~p~iLlLDEP---TsGLDs~t~-~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.|+|+++|.+ +..+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 899999999999999 999999999999 999998875 578888876 278888887764 344444
No 102
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.61 E-value=1.7e-15 Score=171.69 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE
Q 003389 341 RGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil 416 (824)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.|+++.+ .+.++|++.|+ .++.+.||++++
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~--~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECC--HHHHHhCCEEEE
Confidence 349999999999999999 68999999999999999999999999999864 36788887776 467789999999
Q ss_pred Ec
Q 003389 417 LS 418 (824)
Q Consensus 417 L~ 418 (824)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 103
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.61 E-value=1.7e-15 Score=155.27 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=110.8
Q ss_pred ccccccceee-EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 183 SVRILKDVSG-IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 183 ~~~IL~~vs~-~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+.+.|+++.+ .+++|++++|+||||||||||++.|++...+. .|+|.|.+.+. +
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~----------------------~ 62 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE----------------------S 62 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS----------------------C
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc----------------------C
Confidence 3457888885 89999999999999999999999999887553 56666544321 1
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
..+........ +. .+.. .. . ......+.....++ ...+ ..
T Consensus 63 ~~~~~~~~~~~-~~-------------------~~~~-~~---------~-~~~~~~~~~~~~~~-----~~~~----~~ 102 (235)
T 2w0m_A 63 RDSIIRQAKQF-NW-------------------DFEE-YI---------E-KKLIIIDALMKEKE-----DQWS----LV 102 (235)
T ss_dssp HHHHHHHHHHT-TC-------------------CCGG-GB---------T-TTEEEEECCC---------CTTB----CS
T ss_pred HHHHHHHHHHh-cc-------------------hHHH-Hh---------h-CCEEEEeccccccC-----ceee----ec
Confidence 11111000000 00 0000 00 0 00000000000111 0001 12
Q ss_pred CCCHHHHHHHHHHHHHHcCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEccCc-------hhHHhh
Q 003389 342 GISGGQKKRVTTGEMLVGTAN--VLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPA-------PETYDL 410 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~--iLlLDEPTsGL--Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~-------~e~~~l 410 (824)
..|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++..+.|+|++.|... +.+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 359999988888877778999 99999999887 9999999999999998877889988876652 458889
Q ss_pred cCeEEEEcCC
Q 003389 411 FDDIILLSEG 420 (824)
Q Consensus 411 fD~iilL~~G 420 (824)
||+|++|...
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999864
No 104
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.61 E-value=2.1e-15 Score=146.54 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=71.0
Q ss_pred ccCCCCCHHHHHHHHHH------HHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhc
Q 003389 338 EMRRGISGGQKKRVTTG------EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (824)
Q Consensus 338 ~~~rgLSGGqrqRvsIA------~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lf 411 (824)
..+..|||||||||+|| ++|+.+|++++|||||+|||+.+...+.+.|+++.+. +.|+|++.|++ +..+.|
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGGGC
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHHhC
Confidence 34556999999999876 8999999999999999999999999999999998754 78999888775 567899
Q ss_pred CeEEEE--cCCeE
Q 003389 412 DDIILL--SEGQI 422 (824)
Q Consensus 412 D~iilL--~~G~i 422 (824)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.60 E-value=9.9e-18 Score=169.52 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~ 275 (824)
|++++|+||||||||||+++|+|+++ + +| |.++|....+.. .++.++|++|+. .... +++ ++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccc--
Confidence 78999999999999999999999987 6 89 999997764432 257799999973 1111 111 0000
Q ss_pred chhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCccCCCCCHHHHHHHHH-
Q 003389 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEMRRGISGGQKKRVTT- 353 (824)
Q Consensus 276 ~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~rgLSGGqrqRvsI- 353 (824)
++.+. ..+..+|. ....+|+|||+++..
T Consensus 66 -------------------------------------------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l 95 (189)
T 2i3b_A 66 -------------------------------------------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVL 95 (189)
T ss_dssp -------------------------------------------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTT
T ss_pred -------------------------------------------------ccCCccccccccce-EEEcchHHHHHHHHHH
Confidence 00000 01123442 234599999998844
Q ss_pred HH---HHHcCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHHhCCcEEEE---EEccCchhHHhhcCeEEEEcCCeEEEe
Q 003389 354 GE---MLVGTANVLYMDE--ISTGLDSSTTFQICKFLKQMVHILDVTMIV---ALLQPAPETYDLFDDIILLSEGQIVYQ 425 (824)
Q Consensus 354 A~---aLv~~p~iLlLDE--PTsGLDs~t~~~I~~~L~~l~~~~~~tvIi---si~q~~~e~~~lfD~iilL~~G~iv~~ 425 (824)
++ |+..+|++|++|| |+..+|......+.+.++ . ..++|+ ++.|..+ ..+.|+|..+.+|+|+.-
T Consensus 96 ~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 96 RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 44 5789999999999 898899876555555444 2 334443 3324432 346788888888898764
Q ss_pred c
Q 003389 426 G 426 (824)
Q Consensus 426 G 426 (824)
.
T Consensus 169 ~ 169 (189)
T 2i3b_A 169 T 169 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.60 E-value=3.2e-15 Score=181.95 Aligned_cols=105 Identities=26% Similarity=0.372 Sum_probs=91.2
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHHHHHHHHHHcC--CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGT--ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~--p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvI 397 (824)
.|+.+||+.. .|+.++ .|||||||||.||++|..+ |++|+|||||+|||+.....+.+.|+++.+ .|.|||
T Consensus 504 ~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVI 577 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLI 577 (993)
T ss_dssp HHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEE
Confidence 4788999854 676666 4999999999999999998 589999999999999999999999999975 588998
Q ss_pred EEEccCchhHHhhcCeEEEE------cCCeEEEecChhhHHH
Q 003389 398 VALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVLE 433 (824)
Q Consensus 398 isi~q~~~e~~~lfD~iilL------~~G~iv~~G~~~~~~~ 433 (824)
++.|. . +..+.||+|++| .+|++++.|+++++..
T Consensus 578 vVeHd-l-~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 578 VVEHD-E-DTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EECCC-H-HHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EECCC-H-HHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 87665 3 345789999999 7999999999988754
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=2.2e-17 Score=178.74 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=81.1
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC-cCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~-l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 260 (824)
+++.+++++++.| +|+||||+|||||+++|+|. ..+. +| |.++|.++......+.+++++|++.....+
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 3567999999998 99999999999999999997 6665 78 888887764322235679999988888889
Q ss_pred CHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 261 TV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
||.||..++.... ..++ . ....+++.+. .+.. .
T Consensus 79 tv~Dt~g~~~~~~-------------~~e~---~--------------------~~l~~~l~~~------~~~~-----~ 111 (301)
T 2qnr_A 79 TVVDTPGYGDAIN-------------CRDC---F--------------------KTIISYIDEQ------FERY-----L 111 (301)
T ss_dssp EEEEEC---------------------------C--------------------TTHHHHHHHH------HHHH-----H
T ss_pred chhhhhhhhhhcC-------------cHHH---H--------------------HHHHHHHHHH------HHHH-----H
Confidence 9999887753210 0000 0 0011111111 1222 2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 341 RGISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
+++|||||||+.+||+++ ++++||||+ |||+... +.++++.+..+.++|++-|+
T Consensus 112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGG
T ss_pred HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCC
Confidence 459999999999988875 999999998 5999873 56666654345566655443
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.58 E-value=7e-15 Score=156.86 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=103.4
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhh
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGR 271 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~ 271 (824)
+-+++|++++|+||||||||||++.|++... .|++.+ |.+... ...+.|+..++. ..+ +. .+
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~-g~~~~~---~~~v~~~~~e~~------~~~-~~--~r 86 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLL-EVGELP---TGPVIYLPAEDP------PTA-IH--HR 86 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTT-CCCCCC---CCCEEEEESSSC------HHH-HH--HH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcC-CCccCC---CccEEEEECCCC------HHH-HH--HH
Confidence 3589999999999999999999999998653 566643 544321 345788876542 211 10 00
Q ss_pred hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHH
Q 003389 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351 (824)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRv 351 (824)
+...+ ... .....+.+++.+++.+..+..+ ..+|+||+|++
T Consensus 87 ~~~~g-----------------~~~-----------------~~~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i 127 (279)
T 1nlf_A 87 LHALG-----------------AHL-----------------SAEERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL 127 (279)
T ss_dssp HHHHH-----------------TTS-----------------CHHHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH
T ss_pred HHHHH-----------------hhc-----------------ChhhhhhccCceEEeecCCCCc-----ccCCHHHHHHH
Confidence 00000 000 0012344667788776655444 45999998876
Q ss_pred HHHHHHHcCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 352 TTGEMLVGTANVLYMDEIST--GLDSSTT---FQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 352 sIA~aLv~~p~iLlLDEPTs--GLDs~t~---~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
++++.+|+++++||||+ ++|.... .++++.|+++++..|+|+|++.|..
T Consensus 128 ---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 128 ---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp ---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred ---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 57888999999999999 9998544 8889999999876788988876643
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=4e-17 Score=192.82 Aligned_cols=171 Identities=16% Similarity=0.215 Sum_probs=109.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC-CCCCcceEeeCCcccCC------CCCCceEEEEecCCCCCCCCCHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK-DLRASGKITYCGHELNE------FVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~-~~~~sG~I~~nG~~~~~------~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
++.++. ++|+|||||||||||++|+|+..| + +|.|+++|.++.. ...++.++|++|+..+++.+||+
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 115 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVE 115 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHH
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHH
Confidence 344443 999999999999999999999877 5 9999999988521 12346799999999999999999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|++.++....+.. ..+ +
T Consensus 116 e~i~~~~~~~~~~-----------------------------------------------~~~----------------~ 132 (608)
T 3szr_A 116 KEINKAQNAIAGE-----------------------------------------------GMG----------------I 132 (608)
T ss_dssp TTHHHHHHHHHCS-----------------------------------------------SSC----------------C
T ss_pred HHHHHHHHHhcCC-----------------------------------------------ccc----------------c
Confidence 9998764221100 000 1
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEEccCch----hHHhh--
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEI------STGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAP----ETYDL-- 410 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEP------TsGLDs~t~~~I~~~L~~l~~~~-~~tvIisi~q~~~----e~~~l-- 410 (824)
| ++++.++......|+++++||| |+|||+....++.+.++++.+.. +.+++++. |... +..++
T Consensus 133 s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt-~~~d~a~~~~l~la~ 208 (608)
T 3szr_A 133 S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVP-SNVDIATTEALSMAQ 208 (608)
T ss_dssp C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEE-SSSCTTTCHHHHHHH
T ss_pred c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEe-ccchhccHHHHHHHH
Confidence 1 0111111222347999999999 99999999999999999975433 44444444 3322 11222
Q ss_pred ------cCeEEEEcCCeEEEecChhhHHHH
Q 003389 411 ------FDDIILLSEGQIVYQGPRDNVLEF 434 (824)
Q Consensus 411 ------fD~iilL~~G~iv~~G~~~~~~~~ 434 (824)
...|+|+.++.++..|+.+++.+.
T Consensus 209 ~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 209 EVDPEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred HHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence 245889999998888876655443
No 110
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.56 E-value=8.3e-16 Score=185.98 Aligned_cols=158 Identities=14% Similarity=0.071 Sum_probs=106.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV 262 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 262 (824)
+..+++|+|+. ++|++++|+||||||||||||+|+|..... ..| ..+.. ....++++.| ++..+++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~G------~~vpa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YIG------SYVPA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TTT------CCBSS--SEEEECCCCE---EEEEEC-
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hcC------cccch--hcccceeHHH---HHhhCCH
Confidence 34689999999 999999999999999999999999974321 122 11111 0123555544 4455555
Q ss_pred HHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCC
Q 003389 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (824)
Q Consensus 263 ~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rg 342 (824)
.|++..+ ...
T Consensus 660 ~d~l~~~----------------------------------------------------------------------~st 669 (800)
T 1wb9_A 660 ADDLASG----------------------------------------------------------------------RST 669 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhh----------------------------------------------------------------------hhh
Confidence 5554321 012
Q ss_pred CCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI-CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I-~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
+|+|+++ +..+...+.+|+++|||||++|+|+.....+ ...++.+.+..+.++|+++|.+ +..+++|++..+.+|+
T Consensus 670 f~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 670 FMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVH 746 (800)
T ss_dssp CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEE
T ss_pred hhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEE
Confidence 5666654 4444456899999999999999999887776 6778888764588999988775 4556889887777787
Q ss_pred EEEecC
Q 003389 422 IVYQGP 427 (824)
Q Consensus 422 iv~~G~ 427 (824)
+.+...
T Consensus 747 ~~~~~~ 752 (800)
T 1wb9_A 747 LDALEH 752 (800)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 765543
No 111
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.46 E-value=9.5e-17 Score=178.19 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=100.5
Q ss_pred cccceeeEEeC--CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCc----ceEeeC----CcccCCCCCC--ceEEEEecC
Q 003389 186 ILKDVSGIVKP--SRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS----GKITYC----GHELNEFVPQ--RTCAYISQH 253 (824)
Q Consensus 186 IL~~vs~~I~~--Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~s----G~I~~n----G~~~~~~~~~--~~i~yv~Q~ 253 (824)
+.+.|++.|++ |+.++|+||||||||||+++|+|++++. + |+|.++ |.+. ..... +.+++++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 56789999999 9999999999999999999999999886 6 888774 3222 11100 112222221
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc
Q 003389 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (824)
Q Consensus 254 d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 333 (824)
... ...|+.||+.+ +..+..++
T Consensus 233 ~~~-~~~t~~~nl~~---------------------------------------------------------~~~~~~~~ 254 (365)
T 1lw7_A 233 YID-YAVRHSHKIAF---------------------------------------------------------IDTDFITT 254 (365)
T ss_dssp HHH-HHHHHCSSEEE---------------------------------------------------------ESSCHHHH
T ss_pred HHH-HHHhccCCEEE---------------------------------------------------------EeCCchHH
Confidence 100 00111111110 00001111
Q ss_pred cccCccCCCCCHHHHHHHHHHHHHH-cCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 334 MVGDEMRRGISGGQKKRVTTGEMLV-GTANVLYMDE---IS------TGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 334 ~vg~~~~rgLSGGqrqRvsIA~aLv-~~p~iLlLDE---PT------sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
.+ ..+|+|++||..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++.. +|
T Consensus 255 ~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ilild-e~ 328 (365)
T 1lw7_A 255 QA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE-SP 328 (365)
T ss_dssp HH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEE-CS
T ss_pred HH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeC-CC
Confidence 11 125677788888888775 5999999999 65 589999999999999988765567777765 44
Q ss_pred chhHHhhcCeEEEEc
Q 003389 404 APETYDLFDDIILLS 418 (824)
Q Consensus 404 ~~e~~~lfD~iilL~ 418 (824)
. +..+++|.+.+++
T Consensus 329 ~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 S-YLDRYNQVKAVIE 342 (365)
T ss_dssp S-HHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHH
Confidence 3 4556666655554
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1e-14 Score=164.43 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=92.0
Q ss_pred HhhhcccccCcccccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEE
Q 003389 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAY 249 (824)
Q Consensus 170 ~l~~~~~~~~~~~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~y 249 (824)
.+.+.++...+ +.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.+++
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~ 79 (418)
T 2qag_C 11 YVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKV 79 (418)
T ss_dssp ----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEEC
T ss_pred cEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEE
Confidence 34555554444 3467999999998 99999999999999999999764311 2323222211 111256899
Q ss_pred EecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc
Q 003389 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (824)
Q Consensus 250 v~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 329 (824)
++|++..++.+||.||+.++..... .+ .... ..+++ +
T Consensus 80 v~q~~~~~~~Ltv~Dt~g~~~~~~~-------------~~---------~~~~--------------i~~~i-~------ 116 (418)
T 2qag_C 80 LIKEGGVQLLLTIVDTPGFGDAVDN-------------SN---------CWQP--------------VIDYI-D------ 116 (418)
T ss_dssp C------CEEEEEEECC---------------------------------CHH--------------HHHHH-H------
T ss_pred EEecCCcccceeeeechhhhhhccc-------------hh---------hHHH--------------HHHHH-H------
Confidence 9998888888999999877532110 00 0000 01111 1
Q ss_pred cccccccCccCCCCCHHHHHHHHHHHHHHcCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc
Q 003389 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN---VLYMDEIS-TGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (824)
Q Consensus 330 ~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~---iLlLDEPT-sGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q 402 (824)
..++.+++||+.||++++.+|+ +|++|||| .|||+... +.++++.. +.++|++++.
T Consensus 117 -----------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 117 -----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp -----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred -----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 0255677889999999999999 99999999 69998873 44455543 6677777654
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.45 E-value=1.1e-13 Score=140.93 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=59.9
Q ss_pred CCHHH--HHHHHHHHHHHcC-CcEeEEeCCCCCCCHH--------HHHHHHHHHHHHHHhCCcEEEEEEccCch------
Q 003389 343 ISGGQ--KKRVTTGEMLVGT-ANVLYMDEISTGLDSS--------TTFQICKFLKQMVHILDVTMIVALLQPAP------ 405 (824)
Q Consensus 343 LSGGq--rqRvsIA~aLv~~-p~iLlLDEPTsGLDs~--------t~~~I~~~L~~l~~~~~~tvIisi~q~~~------ 405 (824)
.|+++ ++++..+++++.+ |+++++||||+++|.. ...++++.|+++++..+.|+|++.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 44443 6788888899886 9999999999999973 33557777888887778888887664431
Q ss_pred ------hHHhhcCeEEEEcCC
Q 003389 406 ------ETYDLFDDIILLSEG 420 (824)
Q Consensus 406 ------e~~~lfD~iilL~~G 420 (824)
.+...||.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 467789999999754
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.44 E-value=2.3e-14 Score=158.43 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=89.2
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRET 265 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~ 265 (824)
+|+++ .+.+|++++|+|||||||||||++|+|.+++. ..|.|...+.++ ++..+...+++.|......
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~-e~~~~~~~~~v~q~~~~~~------- 181 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI-EFVHESKKCLVNQREVHRD------- 181 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC-CSCCCCSSSEEEEEEBTTT-------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH-Hhhhhccccceeeeeeccc-------
Confidence 45544 67899999999999999999999999998763 146665444333 2222222344444311000
Q ss_pred HHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 266 LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 266 L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
.++-
T Consensus 182 ----------------------------------------------------------------------------~~~~ 185 (356)
T 3jvv_A 182 ----------------------------------------------------------------------------TLGF 185 (356)
T ss_dssp ----------------------------------------------------------------------------BSCH
T ss_pred ----------------------------------------------------------------------------cCCH
Confidence 0222
Q ss_pred HHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCC
Q 003389 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (824)
Q Consensus 346 GqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G 420 (824)
.+ +||++|..+|++|++|||| |..+...+ .+.+. .|.++++++|... ..+.+||++.|..|
T Consensus 186 ~~----~La~aL~~~PdvillDEp~---d~e~~~~~----~~~~~-~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 186 SE----ALRSALREDPDIILVGEMR---DLETIRLA----LTAAE-TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp HH----HHHHHTTSCCSEEEESCCC---SHHHHHHH----HHHHH-TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred HH----HHHHHhhhCcCEEecCCCC---CHHHHHHH----HHHHh-cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 22 8999999999999999999 66654443 33443 5889888887655 33789999988654
No 115
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.43 E-value=8.8e-15 Score=151.23 Aligned_cols=150 Identities=16% Similarity=0.162 Sum_probs=96.5
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCH----HHHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTV----RETL 266 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV----~E~L 266 (824)
.-..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|++..++.+|+ .|++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 4467899999999999999999999999998752 3589999999775432 23568999997544433333 2222
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+....+ |.|
T Consensus 88 ~~~~~~y--------------------------------------------------------------------g~~-- 97 (219)
T 1s96_A 88 EVFGNYY--------------------------------------------------------------------GTS-- 97 (219)
T ss_dssp EETTEEE--------------------------------------------------------------------EEE--
T ss_pred HHHhccC--------------------------------------------------------------------CCC--
Confidence 1111000 111
Q ss_pred HHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEec
Q 003389 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G 426 (824)
+++ .+.++..++++||| ||+.++.++.+.+. .+.||+++.|++ .++.+ |+ +.+| .+
T Consensus 98 -~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~ 153 (219)
T 1s96_A 98 -REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QD 153 (219)
T ss_dssp -HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CS
T ss_pred -HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CC
Confidence 111 23444557999999 99999999998876 367777766543 33333 43 6777 57
Q ss_pred ChhhHHHHHH
Q 003389 427 PRDNVLEFFE 436 (824)
Q Consensus 427 ~~~~~~~~f~ 436 (824)
+.+++...+.
T Consensus 154 ~~e~i~~rl~ 163 (219)
T 1s96_A 154 SEEVIAKRMA 163 (219)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777765543
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.43 E-value=1.3e-15 Score=152.41 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=89.2
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhh
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGR 271 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~ 271 (824)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999998 44 799999998753321 1234567777533 35688888876532
Q ss_pred hcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc--cccccCccCCCCCHHHHH
Q 003389 272 CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA--DTMVGDEMRRGISGGQKK 349 (824)
Q Consensus 272 ~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~--dt~vg~~~~rgLSGGqrq 349 (824)
... ..... ..++.+++.+++.... +.. ...+|+|++|
T Consensus 78 ~~~------------~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~ 116 (191)
T 1zp6_A 78 RYA------------KEGYF------------------------VILDGVVRPDWLPAFTALARP-----LHYIVLRTTA 116 (191)
T ss_dssp HHH------------HTSCE------------------------EEECSCCCTTTTHHHHTTCSC-----EEEEEEECCH
T ss_pred HHh------------ccCCe------------------------EEEeccCcHHHHHHHHhcCCC-----eEEEEecCCH
Confidence 110 00000 0000000111111111 111 2349999999
Q ss_pred HHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 003389 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388 (824)
Q Consensus 350 RvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l 388 (824)
|+.++|++..+|+++ +|+.....+.+.++.+
T Consensus 117 ~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 117 AEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 999999999999876 6887777776666554
No 117
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.42 E-value=3.5e-15 Score=150.92 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=52.9
Q ss_pred HHHHcCCCcc-ccccccCccCCCCCHHHHHH-HHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 321 VLKILGLDIC-ADTMVGDEMRRGISGGQKKR-VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 321 iL~~lgL~~~-~dt~vg~~~~rgLSGGqrqR-vsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
.++..+++.. ..+++ ..+|+||||| +..+++++.+|.++++|||||++|.....++.+.|.++.+
T Consensus 132 ~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 132 WAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 4455666542 13333 2499999999 8999999999999999999999999999999999999875
No 118
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.42 E-value=1.3e-14 Score=142.54 Aligned_cols=78 Identities=22% Similarity=0.102 Sum_probs=66.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
+.++++||++|++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++......+ .+++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 46899999999999999999999999999999999999 76 999999998874321111 2799988777 89999
Q ss_pred HHHHH
Q 003389 264 ETLDF 268 (824)
Q Consensus 264 E~L~f 268 (824)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.42 E-value=1.6e-16 Score=159.25 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=108.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 276 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~ 276 (824)
|++++|+||||||||||+++|++ +. +|.|.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 68999999999999999999997 32 78999999775432 234667776544455688888876532110
Q ss_pred hhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC--CHHHHHHHHHH
Q 003389 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTG 354 (824)
Q Consensus 277 ~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL--SGGqrqRvsIA 354 (824)
. ... .. +++.+...... +..+.+ |+|++|++.++
T Consensus 71 ----------~-~~~-----------------------~~----ild~~~~~~~~------~~~~~~~~s~g~~~~~~~i 106 (189)
T 2bdt_A 71 ----------L-AQN-----------------------DV----VLDYIAFPDEA------EALAQTVQAKVDDVEIRFI 106 (189)
T ss_dssp ----------H-TTC-----------------------EE----EEESCCCHHHH------HHHHHHHHHHCSSEEEEEE
T ss_pred ----------h-cCC-----------------------cE----EEeeccCHHHH------HHHHHHHHhcccCCCeEEE
Confidence 0 000 00 00000000000 001124 88888888877
Q ss_pred H------HHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEecCh
Q 003389 355 E------MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPR 428 (824)
Q Consensus 355 ~------aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~G~~ 428 (824)
. +++.+|+...+|+ |||+..... .+.++.+.. .+.++|.+.|....++.+.||+|+ .+|+++.+|++
T Consensus 107 ~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~ 179 (189)
T 2bdt_A 107 ILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAG 179 (189)
T ss_dssp EEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC---
T ss_pred EEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecC
Confidence 7 8899998888884 899988877 788877753 466777766552457888999999 99999999987
Q ss_pred hhH
Q 003389 429 DNV 431 (824)
Q Consensus 429 ~~~ 431 (824)
+-+
T Consensus 180 ~~~ 182 (189)
T 2bdt_A 180 DPL 182 (189)
T ss_dssp ---
T ss_pred Cch
Confidence 654
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.40 E-value=6e-13 Score=132.49 Aligned_cols=78 Identities=24% Similarity=0.340 Sum_probs=65.4
Q ss_pred CCCCCHHHHHHHHHHHHHH----cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEE
Q 003389 340 RRGISGGQKKRVTTGEMLV----GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv----~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ii 415 (824)
+..||||||||++||++|+ .+|++++|||||+|||+.+...+.+.|+++.+ +.++|+++|++ .+.+.||+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEE
Confidence 4569999999999999996 45799999999999999999999999999864 45666666653 5788999998
Q ss_pred EEc--CCe
Q 003389 416 LLS--EGQ 421 (824)
Q Consensus 416 lL~--~G~ 421 (824)
.+. +|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 664 564
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.39 E-value=1.3e-13 Score=152.84 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=96.0
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-CCceEEEEe-cCCCC--CCCCC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYIS-QHDLH--HGEMT 261 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~-Q~d~~--~~~lT 261 (824)
+++++|+.|++|++++|+||||||||||+++|+|+++|+ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 349999999999999999999999999999999999986 999999985311111 346788988 65322 13334
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
+
T Consensus 241 ~------------------------------------------------------------------------------- 241 (361)
T 2gza_A 241 A------------------------------------------------------------------------------- 241 (361)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 4
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcCCe
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~G~ 421 (824)
|..|+.++..+|+.+++||+.. .++.+.|+.+... ..|++.++|.. .....+||+..+..|.
T Consensus 242 --------~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g-~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 242 --------ATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASG-HGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp --------HHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTT-CCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred --------HHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcC-CCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 4444555556788999999985 2455566666542 34667777764 3677889998887764
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=154.66 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=105.6
Q ss_pred ccccccceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC---CCCCceEEEEecCCCCC
Q 003389 183 SVRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FVPQRTCAYISQHDLHH 257 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~--~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~---~~~~~~i~yv~Q~d~~~ 257 (824)
+.+ |++||+.|++|++ ++|+||||||||||+|+|+|.. ++|.++.. ....+.++|++|++.++
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----------FEGEPATHTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----------C-------CCSSCEEEEEEEEEEC--CE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----------ccCCcCCCCCccceEeeEEEEeecCccc
Confidence 345 9999999999999 9999999999999999999984 12222211 11235789999998888
Q ss_pred CCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHc-CCC----cccc
Q 003389 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLD----ICAD 332 (824)
Q Consensus 258 ~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~----~~~d 332 (824)
+.+||.||+.|+..... . ..... +..+++ ...+..|... ++. ...|
T Consensus 95 ~~ltv~D~~~~g~~~~~---~-~~~~~---------------i~~~i~----------~q~~~~L~e~~~i~r~l~~~~d 145 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINK---E-DSYKP---------------IVEFID----------AQFEAYLQEELKIRRVLHTYHD 145 (427)
T ss_dssp EEEEEEEEECCCC-CCH---H-HHSHH---------------HHHHHH----------HHHHHHHHHC--CCCCCCCSCC
T ss_pred cccchhhhhhhhhcccc---c-hhhhH---------------HHHHHH----------HHHHHHHHHHHhhhhhhccccc
Confidence 89999999977532110 0 00000 000110 1122333333 443 1123
Q ss_pred cc----cc--CccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEE
Q 003389 333 TM----VG--DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ-MVHILDVTMIVA 399 (824)
Q Consensus 333 t~----vg--~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~-l~~~~~~tvIis 399 (824)
+. +. .+...+++-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +.. .|..++..
T Consensus 146 ~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~i 215 (427)
T 2qag_B 146 SRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQF 215 (427)
T ss_dssp --CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCCC
T ss_pred ccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEec
Confidence 22 11 11224577776 7899999999999999999999999998899888887 544 56666543
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.35 E-value=8e-15 Score=153.42 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhh
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~La---G~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~ 272 (824)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+..+++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998776 8999998765321 1123345567777778888999999764321
Q ss_pred -cCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHH-Hhccch----hhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 273 -LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA-VAGQET----SLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 273 -~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~-~~~~~~----~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
.+.+... .+ .+.. .++. +... ...... ....+.++ ....+..+ ..+||
T Consensus 102 ~~~~~~il------------~g-~~~~-~~~~-~~l~~~~~~~~vi~L~~~~~~~l-----~r~~~r~~-----~~lSg- 155 (246)
T 2bbw_A 102 RRGQHWLL------------DG-FPRT-LGQA-EALDKICEVDLVISLNIPFETLK-----DRLSRRWI-----HPPSG- 155 (246)
T ss_dssp CTTSCEEE------------ES-CCCS-HHHH-HHHHTTCCCCEEEEEECCHHHHH-----HHHHTEEE-----ETTTT-
T ss_pred cCCCeEEE------------EC-CCCC-HHHH-HHHHhhcCCCEEEEEECCHHHHH-----HHHHcCCC-----cCCCC-
Confidence 0000000 00 0000 0000 0000 000000 00000001 11122333 34898
Q ss_pred HHHHHHHHHHH-HcCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHH
Q 003389 347 QKKRVTTGEML-VGTANVLYMD----EISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 347 qrqRvsIA~aL-v~~p~iLlLD----EPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
|| +++ +.+|++++|| |||+|||..+...+.+.|+++.+
T Consensus 156 ---rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 156 ---RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp ---EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred ---Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 66 677 9999999999 99999999999999999998865
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.33 E-value=4.7e-13 Score=138.32 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=42.9
Q ss_pred cCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEEccCchh-------------------H
Q 003389 359 GTANVLYMDEISTGLDSS-------T-----TFQICKFLKQMVHILDVTMIVALLQPAPE-------------------T 407 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~-------t-----~~~I~~~L~~l~~~~~~tvIisi~q~~~e-------------------~ 407 (824)
.+|+++++|||++.+|+. . ..++++.|+++++..++|+|++.|.. .+ +
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecCCCccccCCCcccCCccChh
Confidence 589999999999999975 3 45677778888876788888875532 22 2
Q ss_pred HhhcCeEEEEcCC
Q 003389 408 YDLFDDIILLSEG 420 (824)
Q Consensus 408 ~~lfD~iilL~~G 420 (824)
..+||.+++|+.|
T Consensus 197 ~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 197 AHASTTRLYLRKG 209 (243)
T ss_dssp CCTTCEEEEEEEC
T ss_pred hhcCcEEEEEEEc
Confidence 2379999999865
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.32 E-value=2.7e-13 Score=150.96 Aligned_cols=132 Identities=17% Similarity=0.257 Sum_probs=94.7
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHH
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.++. ...++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee----------
Confidence 3678776 7999999999999999999999999998762 2699988776653 33345577787741
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
+|++ ...+
T Consensus 191 ------------------------------------------------------------~g~~-----------~~~~- 198 (372)
T 2ewv_A 191 ------------------------------------------------------------VGED-----------TKSF- 198 (372)
T ss_dssp ------------------------------------------------------------BTTT-----------BSCS-
T ss_pred ------------------------------------------------------------cCCC-----------HHHH-
Confidence 0110 0113
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEc
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~ 418 (824)
+.+|+++|..+|+++++|||+ |..+... .++.. ..|.++++++|.. ++.+.+||++.|.
T Consensus 199 -----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~--~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 -----ADALRAALREDPDVIFVGEMR---DLETVET---ALRAA--ETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp -----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH--TTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred -----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH--hcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 34432 2477877766653 4677788876654
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.32 E-value=3.4e-15 Score=162.76 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc--------CCCCCCcceEeeCCcccCCCCC------------------CceEEEE-
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL--------GKDLRASGKITYCGHELNEFVP------------------QRTCAYI- 250 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l--------~~~~~~sG~I~~nG~~~~~~~~------------------~~~i~yv- 250 (824)
++++|+|+||||||||||.|.|.. .++ .|+|.++|.++..... .+.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 689999999999999999999986 444 8999999988754311 1235555
Q ss_pred --ecCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHh-HHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCC
Q 003389 251 --SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL-SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (824)
Q Consensus 251 --~Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~-~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL 327 (824)
+|+..++++.+|.||..++.. ..+...+ ...+. .....++.++..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p-------~~~~~~~~~~~~~----------------------~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADP-------GPIIQTFFSHEVL----------------------CQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCH-------HHHHHHHHHSHHH----------------------HHHEEEEEEEEEEET
T ss_pred hHHhcCCCCCCEEEEeCCCCCCH-------HHHHHHHhcCccc----------------------cCeEEECCEEEEEEH
Confidence 465555566677776654310 0000000 00000 000011112334444
Q ss_pred CccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 328 ~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
.+..+... .+|+||+||+..+++++.+|+++ ||| .++.+.|+++. .+.+++++.|.+.
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 44444433 38999999998888888888887 888 67888888875 3778888877654
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.31 E-value=1.1e-13 Score=157.77 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=68.8
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCC------C---CCceEEEEecCCCCC
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF------V---PQRTCAYISQHDLHH 257 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~------~---~~~~i~yv~Q~d~~~ 257 (824)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999876 89999987765321 0 135689999998888
Q ss_pred CCCCHHHHHHHhh
Q 003389 258 GEMTVRETLDFSG 270 (824)
Q Consensus 258 ~~lTV~E~L~f~a 270 (824)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998863
No 128
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.30 E-value=9.2e-15 Score=145.38 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC------CC-ceEE----EEecCCCCCCCCCHHHHH
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQ-RTCA----YISQHDLHHGEMTVRETL 266 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~------~~-~~i~----yv~Q~d~~~~~lTV~E~L 266 (824)
++++|+|+||||||||+++|+|++++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999874333799999998854332 11 2355 778765443 000
Q ss_pred HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHH
Q 003389 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (824)
Q Consensus 267 ~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGG 346 (824)
+ . .+. ....+++++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~--------------------~~~--------------~a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S--------------------EEE--------------GNDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C--------------------HHH--------------HTCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C--------------------hhh--------------hhCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 0012233443 133 57999987 59999
Q ss_pred HHHHHHHHHHHHcCCcEe-------EEeCCCCC---CCHHHHHHHHHHHHHHHHh
Q 003389 347 QKKRVTTGEMLVGTANVL-------YMDEISTG---LDSSTTFQICKFLKQMVHI 391 (824)
Q Consensus 347 qrqRvsIA~aLv~~p~iL-------lLDEPTsG---LDs~t~~~I~~~L~~l~~~ 391 (824)
||||++|||+++.+|++. .-|.|..+ +|......+.+.+.+...+
T Consensus 108 q~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp CCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred CCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence 999999999999999873 23454322 3445567777777666553
No 129
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.28 E-value=3.6e-13 Score=148.54 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=82.0
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-CCCCCcceEeeC-CcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-KDLRASGKITYC-GHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~-~~~~~sG~I~~n-G~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.+++++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 46677765 4899999999999999999999999998 76 9999987 765432 2346789999998888888999
Q ss_pred HHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 264 E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
|+ .. .+.. ..+. ...+.++++.+|+.+..|..+. ++
T Consensus 280 e~---~l--~~l~----------~~e~------------------------~~~~~e~l~~~gl~~f~~~~~~-----~l 315 (358)
T 2rcn_A 280 EF---GL--WHLE----------PEQI------------------------TQGFVEFHDYLGHCKYRDCKHD-----AD 315 (358)
T ss_dssp TC---CC--CCCC----------HHHH------------------------HHTSGGGGGGTTCSSSTTCCSS-----SC
T ss_pred Hh---hh--cCCC----------HHHH------------------------HHHHHHHHHHcCCchhcCCCcc-----cC
Confidence 83 21 1110 0000 0123446778888877776655 49
Q ss_pred CHHHHHHHHHHHHH
Q 003389 344 SGGQKKRVTTGEML 357 (824)
Q Consensus 344 SGGqrqRvsIA~aL 357 (824)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999764
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.25 E-value=9.3e-14 Score=152.66 Aligned_cols=180 Identities=15% Similarity=0.105 Sum_probs=110.0
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEecCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~Q~d~~ 256 (824)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.|. +|+|.+.|.++.... .++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 46899999999999999999999999999999999999886 899999998764321 24568999998777
Q ss_pred CCCC------------CHHHHHHHh-h-hh-------cCCchhhHHHHHhHHHHHhcCC-----CCChhHHHHHHHHHHh
Q 003389 257 HGEM------------TVRETLDFS-G-RC-------LGVGTRYELLAELSRREKQAGI-----KPDPEIDAFMKAVAVA 310 (824)
Q Consensus 257 ~~~l------------TV~E~L~f~-a-~~-------~~~~~~~~~~~~~~~~e~~~~i-----~~~~~~~~~~~~~~~~ 310 (824)
+... +++|.+... . .. -|..... ..-. ....+ .+.. .+.. .
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----~~v~-~~~d~vl~v~d~~~-~~~~------~ 185 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE-----TAVA-DLTDFFLVLMLPGA-GDEL------Q 185 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH-----HHHH-TTSSEEEEEECSCC------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch-----hhHH-hhCCEEEEEEcCCC-cccH------H
Confidence 6532 233333110 0 00 0111000 0000 00000 0000 0000 0
Q ss_pred ccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHc------CCcEeEEeCCCCCCCHHHHHHHHHH
Q 003389 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKF 384 (824)
Q Consensus 311 ~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~------~p~iLlLDEPTsGLDs~t~~~I~~~ 384 (824)
.. .....++...+.+ +..|.. ..+.+|+|++|++..+.+++. .|++++ +|++|.....++.+.
T Consensus 186 ~i--~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 186 GI--KKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp -C--CTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred HH--HHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 00 0001111222222 222211 013479999999999998887 588887 999999999999999
Q ss_pred HHHHHH
Q 003389 385 LKQMVH 390 (824)
Q Consensus 385 L~~l~~ 390 (824)
|.++..
T Consensus 255 I~~~~~ 260 (337)
T 2qm8_A 255 IEDHRS 260 (337)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.24 E-value=3.8e-13 Score=147.11 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=106.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---------CceEEEEecCCCCCCCCCHHH
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---------QRTCAYISQHDLHHGEMTVRE 264 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---------~~~i~yv~Q~d~~~~~lTV~E 264 (824)
.++|++++|+||||||||||++.|+|++++. +|+|.++|.++..... +..+.+++|+....|.+||+|
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 4789999999999999999999999999886 9999999988753221 123569999988899999999
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLS 344 (824)
++.++.... . + . . +++..|+.+..+... +.||
T Consensus 203 ~l~~~~~~~-~---------------------d-----------------~-v---liDtaG~~~~~~~l~-----~eL~ 234 (328)
T 3e70_C 203 AIQHAKARG-I---------------------D-----------------V-V---LIDTAGRSETNRNLM-----DEMK 234 (328)
T ss_dssp HHHHHHHHT-C---------------------S-----------------E-E---EEEECCSCCTTTCHH-----HHHH
T ss_pred HHHHHHhcc-c---------------------h-----------------h-h---HHhhccchhHHHHHH-----HHHH
Confidence 998753210 0 0 0 0 011122222111111 1132
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch--------hHHhhcCeEEE
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP--------ETYDLFDDIIL 416 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~--------e~~~lfD~iil 416 (824)
.+++++..++.+++||.+| | .++++.++.+.+..+.|+|+.++-+.. -.....-.|..
T Consensus 235 -------~i~ral~~de~llvLDa~t-~------~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~ 300 (328)
T 3e70_C 235 -------KIARVTKPNLVIFVGDALA-G------NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILF 300 (328)
T ss_dssp -------HHHHHHCCSEEEEEEEGGG-T------THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEE
T ss_pred -------HHHHHhcCCCCEEEEecHH-H------HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEE
Confidence 3788888777777777444 3 466667777776668888887764421 11223345666
Q ss_pred EcCCeE
Q 003389 417 LSEGQI 422 (824)
Q Consensus 417 L~~G~i 422 (824)
+..|+-
T Consensus 301 i~~Ge~ 306 (328)
T 3e70_C 301 VGVGQG 306 (328)
T ss_dssp EECSSS
T ss_pred EeCCCC
Confidence 666654
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.23 E-value=7.8e-13 Score=142.31 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=83.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~ 274 (824)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++. ++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCCh-HHHHHHhccccccc
Confidence 47889999999999999999999999865 23 0 12446666999888765 88999887521000
Q ss_pred CchhhHHHHHhHHHHHhcCCCCC-hhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc------cccCccCCCCCHHH
Q 003389 275 VGTRYELLAELSRREKQAGIKPD-PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT------MVGDEMRRGISGGQ 347 (824)
Q Consensus 275 ~~~~~~~~~~~~~~e~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt------~vg~~~~rgLSGGq 347 (824)
.-. . .+ .|+ .+.+. ....++.+.-. .+| .+. .....+||||
T Consensus 92 l~~---------~----~g-~p~a~d~~~---------------l~~~l~~l~~g--~~t~~~~~v~~p-~y~~~~sgGq 139 (290)
T 1odf_A 92 LLQ---------G----RG-LPGTHDMKL---------------LQEVLNTIFNN--NEHPDQDTVVLP-KYDKSQFKGE 139 (290)
T ss_dssp GGS---------S----SC-STTSBCHHH---------------HHHHHHHHTC--------CCEEEEC-CEETTHHHHT
T ss_pred hhh---------h----cc-CcchhHHHH---------------HHHHHHHhhcc--CccccCcceeec-cCccccCCcc
Confidence 000 0 00 011 11111 22234444321 111 111 2335799999
Q ss_pred HHHHHHH--HHHHcCCcEeEEeCCCCCCCHHH
Q 003389 348 KKRVTTG--EMLVGTANVLYMDEISTGLDSST 377 (824)
Q Consensus 348 rqRvsIA--~aLv~~p~iLlLDEPTsGLDs~t 377 (824)
+||+.+| +++ +|+|||+|||++++|+..
T Consensus 140 ~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 140 GDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccccceEc--CCCEEEEeCccccCCccc
Confidence 9999997 555 999999999999999853
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.23 E-value=1.6e-12 Score=128.98 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=40.4
Q ss_pred HcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh
Q 003389 358 VGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (824)
Q Consensus 358 v~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e 406 (824)
+.+|++|+||||++ ++|+.....+.+.+.+... .++++|++.|++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 34899999999986 9999999999999988764 478999988877654
No 134
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=4.8e-13 Score=150.69 Aligned_cols=169 Identities=13% Similarity=0.139 Sum_probs=101.7
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHH
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L 266 (824)
-++|++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 479999999999999999999999999999998742 2334333322 234666666541 111222211
Q ss_pred HH---hhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCC
Q 003389 267 DF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (824)
Q Consensus 267 ~f---~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgL 343 (824)
-+ +....+.+.. +.+. ...++.++..+++. +..+ ..+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~~--------~era~~lL~vvDls---~~~~-----~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLRH--------IARTRVLLYVLDAA---DEPL-----KTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHHH--------HTSSSEEEEEEETT---SCHH-----HHH
T ss_pred ccccchhhhhhhhHH------------------------HHHH--------HHHHHhhhEEeCCc---cCCH-----HHH
Confidence 11 0000011000 0000 00112233334443 2223 349
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCe
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~ 413 (824)
|+|++|++.++++|+..|.++++ +++|.... ..++.+++..+..+.+++.++.+....+.++++.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999999999999999999999 99999877 5556666655545667776655544455555543
No 135
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.18 E-value=1.2e-13 Score=159.78 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=66.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 263 (824)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ +|.|+++|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45889999999999999999999999999999999999887 999999986522221235577777765534456888
Q ss_pred HHHHHhhh
Q 003389 264 ETLDFSGR 271 (824)
Q Consensus 264 E~L~f~a~ 271 (824)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88776554
No 136
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.18 E-value=4.5e-11 Score=132.82 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHH------HHHHHHHcC-CcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 340 RRGISGGQKKRV------TTGEMLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 340 ~rgLSGGqrqRv------sIA~aLv~~-p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+..+|||||||+ ++|++|+.+ |++|+|||||+|||+.++..+.+.|+++.+ +.+++++.|++ ++...||
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d 353 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVAD 353 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCC
Confidence 457999999988 557889999 999999999999999999999999998743 46788887775 4678999
Q ss_pred eEEEEc
Q 003389 413 DIILLS 418 (824)
Q Consensus 413 ~iilL~ 418 (824)
++++|+
T Consensus 354 ~~~~l~ 359 (371)
T 3auy_A 354 VIINVK 359 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 137
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.15 E-value=5.8e-12 Score=136.25 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=80.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee---CCcccCCCCC---CceEEEEecCCCCC-----CCCCH
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDLHH-----GEMTV 262 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~---nG~~~~~~~~---~~~i~yv~Q~d~~~-----~~lTV 262 (824)
+.+|++++|+||||||||||+|+|+ ...+. +|+|.+ +|++.+.... .+.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3469999999999999999999999 88886 999999 9987754321 13579999998553 78899
Q ss_pred HHHH--HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCc-cccccccCcc
Q 003389 263 RETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGDEM 339 (824)
Q Consensus 263 ~E~L--~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~ 339 (824)
|++ .|.. .. .+.. +-.+-.+. .+....++++++.++|.+ .++..+.
T Consensus 238 -e~l~~~f~~-~~----------~~~c--~~~~~~~~--------------~e~~~~v~~~l~~~~L~~~~~~~~~~--- 286 (302)
T 2yv5_A 238 -REVRNYFRE-FL----------RYQC--KYPDCTHT--------------NEPGCAVKEAVKNGEISCERYKSYLK--- 286 (302)
T ss_dssp -GGGGGGCGG-GH----------HHHH--HSTTCCSS--------------SCTTCHHHHHHHTTSSCHHHHHHHHH---
T ss_pred -HHHHHHHHH-HH----------HccC--CCCCCCCC--------------CCCCCHHHHHHHcCCCCHHHHHHHHH---
Confidence 888 4431 00 0000 00000000 011224677889999986 6676665
Q ss_pred CCCCCHHHHHHHHHHH
Q 003389 340 RRGISGGQKKRVTTGE 355 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~ 355 (824)
.|||.++|++.|||
T Consensus 287 --~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 --IIKVYLEEIKELCR 300 (302)
T ss_dssp --HTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHhc
Confidence 49998899999986
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.14 E-value=2e-11 Score=136.87 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=47.3
Q ss_pred cCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEEccCc------------------hhHH
Q 003389 359 GTANVLYMDEISTGLDSSTT------------FQICKFLKQMVHILDVTMIVALLQPA------------------PETY 408 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~------------~~I~~~L~~l~~~~~~tvIisi~q~~------------------~e~~ 408 (824)
.+|+++++|||++.+|+... .++++.|+++++..+.|+|++.|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 67889999999888999999877511 2245
Q ss_pred hhcCeEEEEcCCe
Q 003389 409 DLFDDIILLSEGQ 421 (824)
Q Consensus 409 ~lfD~iilL~~G~ 421 (824)
..+|.++.|..|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999998763
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.13 E-value=9.4e-13 Score=148.50 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=91.8
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-------CCceEEEEe----
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYIS---- 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-------~~~~i~yv~---- 251 (824)
...+|+++ +. ++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++.... ..+.+++.+
T Consensus 155 ~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~l 229 (418)
T 1p9r_A 155 NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGL 229 (418)
T ss_dssp HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHH
T ss_pred HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHH
Confidence 35588888 54 899999999999999999999999999886 899999998774211 112344544
Q ss_pred -----cCCCC--CCC----CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHH
Q 003389 252 -----QHDLH--HGE----MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320 (824)
Q Consensus 252 -----Q~d~~--~~~----lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (824)
|++.. +++ .|+.+++.++..-+.+-.. +... + .. .+..
T Consensus 230 r~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t---------------lh~~-~--------------~~-~~i~ 278 (418)
T 1p9r_A 230 RAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST---------------LHTN-T--------------AV-GAVT 278 (418)
T ss_dssp HHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE---------------ECCS-S--------------SH-HHHH
T ss_pred HHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc---------------cchh-h--------------HH-HHHH
Confidence 77654 354 5788888765321100000 0000 0 00 0112
Q ss_pred HHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEE
Q 003389 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366 (824)
Q Consensus 321 iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlL 366 (824)
.|..+|++... .. ..|||||+|| ||++|+.+|++..-
T Consensus 279 rL~~lgl~~~~--~~-----~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 279 RLRDMGIEPFL--IS-----SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHTCCHHH--HH-----HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHcCCcHHH--HH-----HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 35667876542 22 3599999999 99999999998763
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=7.7e-11 Score=129.01 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=71.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CcCCCCCCcceEeeCCcccCCCC-CCceEEEEecCCCCCCCCCHHHHHHHhhhhcCCch
Q 003389 200 TLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG-~l~~~~~~sG~I~~nG~~~~~~~-~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~~~~ 277 (824)
++|.||||+|||||+++|+| ++.++ .|+|.++|.+..... .+..+++++|.+.+.-..+ + .+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNN- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------C-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCc-
Confidence 89999999999999999999 66665 899999997764321 1356788888653311100 0 0000
Q ss_pred hhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHH
Q 003389 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357 (824)
Q Consensus 278 ~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aL 357 (824)
+. ..+...++.+......+..+ .+|| +
T Consensus 105 -------------------~~-----------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 105 -------------------DR-----------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp -------------------CH-----------------HHHHHHHHHHTTTTC---------------------------
T ss_pred -------------------ch-----------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 00 00111122221110011111 2566 7
Q ss_pred HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 358 v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
..+|+++++|||++ ||..+...+.+.|.+.. .+.++|++.|++..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 176 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 88999999999999 99999999999999864 36778888777653
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.05 E-value=2.1e-12 Score=131.63 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=28.3
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++|++++|+||||||||||+++|+|++++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
No 142
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.05 E-value=1.7e-12 Score=142.12 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=101.4
Q ss_pred ccccccceeeEEeCC-------eEEEEEcCCCCcHHHHHHHHhcCcCCCC-CCcceEeeCCcccCCC---CCCceEEEEe
Q 003389 183 SVRILKDVSGIVKPS-------RMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEF---VPQRTCAYIS 251 (824)
Q Consensus 183 ~~~IL~~vs~~I~~G-------e~~aLlGpnGSGKSTLL~~LaG~l~~~~-~~sG~I~~nG~~~~~~---~~~~~i~yv~ 251 (824)
...+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..+|.++... ..++.+.++.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 456888999988876 8899999999999999999999873211 1378887777665321 1245689999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 252 Q~d~~~~~lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
|.+.+.+ ++.|++.......+.. .. .... + ....++..+..++|.. +
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~----i~--~~~~---------~---------------~~~~i~~~l~~~~li~-a 156 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQID----IM--IGKG---------P---------------SAKSIRIDIQPFTLVG-A 156 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCC----C-----------------------------------------CCCEEEE-E
T ss_pred chhhcCH--HHHHHHHHHHHhcccc----ee--eccC---------c---------------ccccccccCCCeEEEE-e
Confidence 9776655 7888885432211100 00 0000 0 0011222344455544 5
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~ 393 (824)
++.++ .||+|+|||+.++ .+||+.+..++.+.|++.++..+
T Consensus 157 t~~~~-----~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 157 TTRSG-----LLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp ESCGG-----GSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT
T ss_pred cCCcc-----cCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC
Confidence 55555 4999999998554 78889899999999999887544
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=2.5e-10 Score=110.59 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=34.8
Q ss_pred HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE-EEEEEccCchh
Q 003389 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT-MIVALLQPAPE 406 (824)
Q Consensus 358 v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~t-vIisi~q~~~e 406 (824)
+.+|++|++|||++ +|...+..+.+.+.++... +++ +|++.+.+..+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESSCTTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCCCHHH
Confidence 45689999999998 6665588888999887764 566 77766655433
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.03 E-value=2.6e-13 Score=151.56 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=113.9
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcC------------cCCCCCCcceEeeCCcccCC----CCCCceE---EEEecC
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGK------------LGKDLRASGKITYCGHELNE----FVPQRTC---AYISQH 253 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~------------l~~~~~~sG~I~~nG~~~~~----~~~~~~i---~yv~Q~ 253 (824)
.+++|..++|+|+||||||||+|+|+|. ..| ..|.|.++|..++. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 5678999999999999999999999993 234 48999999854321 2233333 467777
Q ss_pred CCCCCCCCHHHHH--HHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccc
Q 003389 254 DLHHGEMTVRETL--DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (824)
Q Consensus 254 d~~~~~lTV~E~L--~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 331 (824)
+.+...++..|++ .|...++.. +.++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhccc--
Confidence 7777777765544 332211110 00111111111
Q ss_pred cccccCccCCCCCHHHHHHHHHHHHHHcCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEEccCchhHH
Q 003389 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTA--NVLYMDEISTGLDSSTTFQICKFLKQM-VHILDVTMIVALLQPAPETY 408 (824)
Q Consensus 332 dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p--~iLlLDEPTsGLDs~t~~~I~~~L~~l-~~~~~~tvIisi~q~~~e~~ 408 (824)
+..+..+||+. +| +++++|||+.++|.......++.++.+ .+ .|.|++ .|...++.
T Consensus 128 -----d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~---sh~~~~~~ 186 (392)
T 1ni3_A 128 -----DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE---MKAKKEEQ 186 (392)
T ss_dssp -----TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS---HHHHHHHH
T ss_pred -----cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc---cccHHHHH
Confidence 12223366653 88 999999999999999999999999887 54 455643 34566788
Q ss_pred hhcCeEE-EEcCC-eEEEecChh
Q 003389 409 DLFDDII-LLSEG-QIVYQGPRD 429 (824)
Q Consensus 409 ~lfD~ii-lL~~G-~iv~~G~~~ 429 (824)
++||++. +|.+| ++++.|+.+
T Consensus 187 ~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 187 AIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHhccCCceeecCCCC
Confidence 9999999 99999 998877643
No 145
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.02 E-value=2.6e-13 Score=137.61 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=43.4
Q ss_pred HHH-HHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEEEcC
Q 003389 353 TGE-MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (824)
Q Consensus 353 IA~-aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iilL~~ 419 (824)
.++ +++.+|++++|||+|+++|..+...|.+.|.+..+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 445 6788899999999999999999999999998876532 1112 1 2 56999988864
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.01 E-value=3e-11 Score=130.55 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=51.7
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee---CCcccCCCCC---CceEEEEecCCC----------
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP---QRTCAYISQHDL---------- 255 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~---nG~~~~~~~~---~~~i~yv~Q~d~---------- 255 (824)
+.+.+|++++|+||||||||||||+|+|+..|. +|+|.+ +|++++.... .+.++||+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345579999999999999999999999999987 999999 8987754321 135799999874
Q ss_pred ------CCCCCCHHHHHHHh
Q 003389 256 ------HHGEMTVRETLDFS 269 (824)
Q Consensus 256 ------~~~~lTV~E~L~f~ 269 (824)
++|++|| ||+.|.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHHhccc-ccCcCC
Confidence 5788899 888875
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.00 E-value=3.1e-13 Score=144.23 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=93.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 46899999999999 999999999999999999998753 789999987643221 23456666653 34455
Q ss_pred CCHHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCcc
Q 003389 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (824)
Q Consensus 260 lTV~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 339 (824)
+++.|++.+.+..++. .. .+ .+....++.+
T Consensus 106 i~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~~~~l---- 135 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVVNQLL---- 135 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHHHH----
T ss_pred eEeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHHHHHH----
Confidence 5555555442211000 00 00 0111112222
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEIST------------GLDSSTTFQICKFL 385 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTs------------GLDs~t~~~I~~~L 385 (824)
..|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 136 -~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 136 -TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp -HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred -HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 249999999999999999999986 98864 23556666655543
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.88 E-value=2.7e-10 Score=123.30 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee---CCcccCCCCC-Cce-EEEEecCCCCCC----CCCH
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY---CGHELNEFVP-QRT-CAYISQHDLHHG----EMTV 262 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~---nG~~~~~~~~-~~~-i~yv~Q~d~~~~----~lTV 262 (824)
+.+.+|++++|+||||+|||||+|+|+|...+. +|+|.+ +|+..+.... .+. .+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 445689999999999999999999999999886 999999 8877653221 122 699999987655 6899
Q ss_pred HHHHH
Q 003389 263 RETLD 267 (824)
Q Consensus 263 ~E~L~ 267 (824)
|++.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.88 E-value=9.6e-09 Score=105.94 Aligned_cols=61 Identities=21% Similarity=0.102 Sum_probs=46.6
Q ss_pred cCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh-------HHhhcCeEEEEcC
Q 003389 359 GTANVLYMDEISTGL--DSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-------TYDLFDDIILLSE 419 (824)
Q Consensus 359 ~~p~iLlLDEPTsGL--Ds~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e-------~~~lfD~iilL~~ 419 (824)
.+|+++++|+|++.+ |.....+++..|.+++++.++|++++.|..... +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665567777778888777788998876654421 4678899999964
No 150
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.86 E-value=1.9e-10 Score=124.66 Aligned_cols=73 Identities=11% Similarity=0.135 Sum_probs=60.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCCcceEee---CCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITY---CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~--~~~~~sG~I~~---nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
++|++++|+||||||||||+++|+|++. |+ +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999987 76 899999 88764321 13456788 877788889999999886
Q ss_pred hhh
Q 003389 270 GRC 272 (824)
Q Consensus 270 a~~ 272 (824)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.85 E-value=1.8e-09 Score=116.99 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=80.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHh
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFS 269 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~ 269 (824)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. +. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 45567899999999999999999999999998764 677877665421 10 001111
Q ss_pred hhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHH
Q 003389 270 GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349 (824)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrq 349 (824)
..+++.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233455542 1 236899999
Q ss_pred HH---HHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 350 RV---TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 350 Rv---sIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
++ ++++++..+|+++++|||.. ......+++.|+++.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3445566666666544
No 152
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.84 E-value=1e-09 Score=125.35 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=49.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~ 240 (824)
..+|+|||+.|++ ++++|+|||||||||||++|+|+++|+ +|+|.++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999997 9999999998754
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.84 E-value=2e-09 Score=122.81 Aligned_cols=185 Identities=15% Similarity=0.157 Sum_probs=111.2
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
.+...|+++.+-+++|+++.|.|+||+|||||+..|++...+. .| ..+.|+.-+ ++
T Consensus 188 tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s 243 (454)
T 2r6a_A 188 TGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MS 243 (454)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SC
T ss_pred CCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CC
Confidence 3456899999999999999999999999999999999865431 22 124455432 33
Q ss_pred HHHHHHHh-hhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccC
Q 003389 262 VRETLDFS-GRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (824)
Q Consensus 262 V~E~L~f~-a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 340 (824)
..+...-. +...+... ..+ +...+ .+.+.+ .+...++.++..+.. +-+ .
T Consensus 244 ~~~l~~r~~~~~~~~~~-----~~l----~~g~l-~~~~~~---------------~~~~a~~~l~~~~l~---i~d--~ 293 (454)
T 2r6a_A 244 AQQLVMRMLCAEGNINA-----QNL----RTGKL-TPEDWG---------------KLTMAMGSLSNAGIY---IDD--T 293 (454)
T ss_dssp HHHHHHHHHHHHHTCCH-----HHH----HTSCC-CHHHHH---------------HHHHHHHHHHSSCEE---EEC--C
T ss_pred HHHHHHHHHHHHcCCCH-----HHH----hcCCC-CHHHHH---------------HHHHHHHHHhcCCEE---EEC--C
Confidence 33222110 00011110 000 00000 001111 122233333322211 111 2
Q ss_pred CCCCHHHHHHHHHHHHHH--cCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHHhCCcEEEEEEc---------
Q 003389 341 RGISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDS--------STTFQICKFLKQMVHILDVTMIVALL--------- 401 (824)
Q Consensus 341 rgLSGGqrqRvsIA~aLv--~~p~iLlLDEPTsGLDs--------~t~~~I~~~L~~l~~~~~~tvIisi~--------- 401 (824)
.++|.+|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+.++++.+++||++.|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 358999987 5666666 68999999999997743 34467888899999888888888765
Q ss_pred c--Cc-------hhHHhhcCeEEEEcCCeE
Q 003389 402 Q--PA-------PETYDLFDDIILLSEGQI 422 (824)
Q Consensus 402 q--~~-------~e~~~lfD~iilL~~G~i 422 (824)
. |. ..+...+|.|++|..++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 32 146778999999987653
No 154
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.75 E-value=8e-10 Score=130.50 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=102.2
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
+...+++++++.+++|+.++|+||||+|||||+++|+|.+.+. .-|.+.+++.+.+.. ...++++++. +
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~--~p~i~~~p~g-------~ 113 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDEN--MPRIKTVPAC-------Q 113 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTT--SCEEEEEETT-------H
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccccc--CCcEEEEecc-------h
Confidence 3456899999999999999999999999999999999998775 248899988877654 3458898875 2
Q ss_pred HHHHHHHh---hhhcCCchhhHHHHHhHHHHHh-c-------CCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCcc
Q 003389 262 VRETLDFS---GRCLGVGTRYELLAELSRREKQ-A-------GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (824)
Q Consensus 262 V~E~L~f~---a~~~~~~~~~~~~~~~~~~e~~-~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 330 (824)
.++.+.-. +.... ..+ +. ......... . ...+.+-+ ..... ..-+.+|.-..
T Consensus 114 ~~~~~e~~~~~~~~~~-~~r-~~-~~~~~~~~~~~nl~v~~~~~~~~~~v-----------~~~~~---~~~~L~G~~~~ 176 (604)
T 3k1j_A 114 GRRIVEKYREKAKSQE-SVK-SS-NMRLKSTVLVPKLLVDNCGRTKAPFI-----------DATGA---HAGALLGDVRH 176 (604)
T ss_dssp HHHHHHHHHHHHHHHT-CC-------------CCCEEEECCTTCSSCCEE-----------ECTTC---CHHHHHCEECC
T ss_pred HHHHHHHHHHhhccch-hhh-hh-cccccccccccceeeccccCCCCCEE-----------EcCCC---CHHhcCceEEe
Confidence 22211110 00000 000 00 000000000 0 00000000 00000 01122332111
Q ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 003389 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387 (824)
Q Consensus 331 ~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~ 387 (824)
... ...++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 177 ~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 177 DPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred chh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 111 124699999999999999999999999999998 899888888877764
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.74 E-value=3.4e-08 Score=106.30 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=83.4
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHH
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+..... ++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~------------------~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA------------------AR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH------------------HH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh------------------HH-HHHH
Confidence 678888 99999999999999999999999998765 788888776542100 00 0000
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGq 347 (824)
.+.+..|++.... + .+-...+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112334432210 0 0123446
Q ss_pred HHHHHHHHHHHcCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 003389 348 KKRVTTGEMLVGTANVLYMDEI-STGLDSSTTFQICKFLKQM 388 (824)
Q Consensus 348 rqRvsIA~aLv~~p~iLlLDEP-TsGLDs~t~~~I~~~L~~l 388 (824)
.+|.+++++...+++++++||| +.|+|.....++.+..+.+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 6788999998899999999999 9999998888887776665
No 156
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.71 E-value=2.8e-08 Score=107.12 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=85.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHHHHHHHhhhhcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E~L~f~a~~~~ 274 (824)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999998753 45 23566666532 2345555543211
Q ss_pred CchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHH
Q 003389 275 VGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354 (824)
Q Consensus 275 ~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA 354 (824)
..|++.. + ..+. +.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~~-~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYTK-EEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSSH-HHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCCH-HHHHHHHH
Confidence 1233211 0 0122 33355555
Q ss_pred HHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH--hCCcEEEEEEccCchhHHhhcCeEEEEcCCeEEEe
Q 003389 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH--ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425 (824)
Q Consensus 355 ~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~--~~~~tvIisi~q~~~e~~~lfD~iilL~~G~iv~~ 425 (824)
+ +.+|+++|+| |+|+|+.....+.+..+-+.. ..+.++|+...+...++.+.+|++..+..|.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 999998766544443332211 11223444224444567777777766666777753
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.70 E-value=9.9e-10 Score=110.50 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=49.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---CCceEEEEecCCCCCCCCCHHHHHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVRETLD 267 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lTV~E~L~ 267 (824)
|+.+++|++++|+||||||||||+++|+|+++ .+.++|....... ..+.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999863 3566665543321 1345789999876666666666554
Q ss_pred H
Q 003389 268 F 268 (824)
Q Consensus 268 f 268 (824)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.62 E-value=4.1e-08 Score=108.20 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcC--CcEeEEeCCCCCC----------CH---HHHHHHHHHHHHH---HHhCCcEEEEEEccCch-----
Q 003389 349 KRVTTGEMLVGT--ANVLYMDEISTGL----------DS---STTFQICKFLKQM---VHILDVTMIVALLQPAP----- 405 (824)
Q Consensus 349 qRvsIA~aLv~~--p~iLlLDEPTsGL----------Ds---~t~~~I~~~L~~l---~~~~~~tvIisi~q~~~----- 405 (824)
+-+.++++++.. |+++++||+++.+ |+ ..+..+.+.++++ +++.++|+|++.|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677878754 9999999999998 33 2222344444444 45668888887553221
Q ss_pred ----------hHHhhcCeEEEEcCCeEEEecC
Q 003389 406 ----------ETYDLFDDIILLSEGQIVYQGP 427 (824)
Q Consensus 406 ----------e~~~lfD~iilL~~G~iv~~G~ 427 (824)
.+...||.++.+..++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1456799999998887766554
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.57 E-value=5.5e-09 Score=120.21 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=93.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc--CcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCC--CHHH
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM--TVRE 264 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG--~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l--TV~E 264 (824)
.+++.+.++..++|.|++||||||+|++|.. +.... .|++.+.+.+.+..... ....+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhhhh--------hhccCCcccceeec
Confidence 4778888999999999999999999999875 33333 57777666554321110 00011111 2222
Q ss_pred HHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccc--cccCccCCC
Q 003389 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT--MVGDEMRRG 342 (824)
Q Consensus 265 ~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt--~vg~~~~rg 342 (824)
+...+..... ....++.+ + ..+++..|+.+..+. .+. ..
T Consensus 228 d~~~a~~~L~-----~~~~Emer-----------------------------R-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEMER-----------------------------R-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHHHHH-----------------------------H-HHHHHHcCCccHHHHHHHHH----HH
Confidence 2222211000 00111111 1 135566666543321 121 13
Q ss_pred CCHHHHHHH----------HHHHHHHcCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEccCc
Q 003389 343 ISGGQKKRV----------TTGEMLVGTAN-VLYMDEISTGLDSSTTFQICKFLKQMV---HILDVTMIVALLQPA 404 (824)
Q Consensus 343 LSGGqrqRv----------sIA~aLv~~p~-iLlLDEPTsGLDs~t~~~I~~~L~~l~---~~~~~tvIisi~q~~ 404 (824)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.|.+++ +..|.++|++.+.|.
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788887752 34556677887 89999999988843 344555555554 445789999888876
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.54 E-value=9.4e-11 Score=124.67 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=56.4
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~-~~~~ 259 (824)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|... ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 45899999999999 99999999999999999999864 6889999876533211 123455666532 3455
Q ss_pred CCHHHHHH
Q 003389 260 MTVRETLD 267 (824)
Q Consensus 260 lTV~E~L~ 267 (824)
+++.|++.
T Consensus 135 i~~iDeid 142 (278)
T 1iy2_A 135 IVFIDEID 142 (278)
T ss_dssp EEEEETHH
T ss_pred EEehhhhH
Confidence 56666664
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.54 E-value=9.5e-09 Score=102.65 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHH
Q 003389 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388 (824)
Q Consensus 349 qRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l 388 (824)
+.+.+|++++.+|+++++| ||++|.....++.+.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999888763
No 162
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.53 E-value=2.6e-08 Score=102.75 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=23.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh-cCcCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA-GKLGK 223 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La-G~l~~ 223 (824)
.+..+++|+++++|++++|+||||||||||+++|+ |++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45789999999999999999999999999999999 98743
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.50 E-value=1.4e-10 Score=121.36 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=55.7
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCC-CCCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d-~~~~~ 259 (824)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++..... .+.+++++|.. ...+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 45899999999999 99999999999999999999864 6889998876532211 12345555542 23455
Q ss_pred CCHHHHHH
Q 003389 260 MTVRETLD 267 (824)
Q Consensus 260 lTV~E~L~ 267 (824)
+++.|++.
T Consensus 111 i~~~Deid 118 (254)
T 1ixz_A 111 IVFIDEID 118 (254)
T ss_dssp EEEEETHH
T ss_pred EEEehhhh
Confidence 56666663
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.47 E-value=7.9e-08 Score=105.99 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=33.1
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE-eeCC
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI-TYCG 235 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I-~~nG 235 (824)
+=+++|+++.|.||||||||||+..+++...+. .|.| ++++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 479999999999999999999999999876543 4554 3343
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.46 E-value=7e-09 Score=107.51 Aligned_cols=59 Identities=22% Similarity=0.157 Sum_probs=40.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC-----------CCceEEEEecC
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----------PQRTCAYISQH 253 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~-----------~~~~i~yv~Q~ 253 (824)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 899999999999999999999999987 999999998773211 13568899884
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.33 E-value=2.4e-08 Score=100.77 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=48.6
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC--CCceEEEEecCCCCCCCCCHHHHHHH
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLDF 268 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~lTV~E~L~f 268 (824)
.+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 3566799999999999999999999999875 77899987764211 11235777876555555566665544
No 167
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.28 E-value=6.5e-07 Score=88.32 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=45.6
Q ss_pred cc--cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC---------cccCCCCCCceEEEEecCC
Q 003389 186 IL--KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---------HELNEFVPQRTCAYISQHD 254 (824)
Q Consensus 186 IL--~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG---------~~~~~~~~~~~i~yv~Q~d 254 (824)
.+ +++++.+.+| +++|+||||||||||+++|.+.+.+. .|.....+ ...........+..++|++
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL---SAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC---CTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC---cccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 55 7899999999 99999999999999999999988764 44332222 1111101234688888874
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.26 E-value=1.8e-06 Score=98.71 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEEccC
Q 003389 345 GGQKKRVTTGEMLVGTANVLYMDEI----------STGLDSSTTFQICKFLKQMV---HILDVTMIVALLQP 403 (824)
Q Consensus 345 GGqrqRvsIA~aLv~~p~iLlLDEP----------TsGLDs~t~~~I~~~L~~l~---~~~~~tvIisi~q~ 403 (824)
|++++|..++++....|.+||+||+ +.|.|......+.++|..+- ...+..+|.+.+.|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5678888899999999999999999 34677766666666666653 22355666666655
No 169
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.25 E-value=2.2e-06 Score=93.85 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=86.5
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
.+..-|+.+.+-+.+|+++.|.|+||+|||||+.-++..... . ...+.|++- +++
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~---------g~~Vl~fSl------Ems 85 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------D---------DRGVAVFSL------EMS 85 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------T---------TCEEEEEES------SSC
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------c---------CCeEEEEeC------CCC
Confidence 345678888888999999999999999999999988864321 1 123555553 345
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCC
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 341 (824)
..+...=. .. ....+.+.... -|
T Consensus 86 ~~ql~~Rl------------ls-------------------------------------~~~~v~~~~l~---~g----- 108 (338)
T 4a1f_A 86 AEQLALRA------------LS-------------------------------------DLTSINMHDLE---SG----- 108 (338)
T ss_dssp HHHHHHHH------------HH-------------------------------------HHHCCCHHHHH---HT-----
T ss_pred HHHHHHHH------------HH-------------------------------------HhhCCCHHHHh---cC-----
Confidence 44422100 00 00000111100 12
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVA 399 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~-~~tvIis 399 (824)
.||+++.+|++.|...+.++++++.|+|+.. ..+|...++++.+.. +..+|++
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE
Confidence 3999999999999999999999999998654 336777777777666 6666664
No 170
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.19 E-value=4.2e-07 Score=90.92 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 003389 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389 (824)
Q Consensus 351 vsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~ 389 (824)
...|++++.+|+++++| ||++|.....++.+.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45688999999999999 99999999999998887654
No 171
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=7e-07 Score=89.54 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=28.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~ 224 (824)
++|++|++++|+||||||||||+++|++++.|+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 367899999999999999999999999998553
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.14 E-value=7.9e-07 Score=98.47 Aligned_cols=155 Identities=16% Similarity=0.058 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCC--------CCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCCHH---HHHH
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGKD--------LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR---ETLD 267 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~~--------~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~---E~L~ 267 (824)
.++|+|+||||||||+|.|+|..... ...+|.|.++|.++. .-.+.|++.+.+ ...|. .++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve~f~~tl~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVDAFFVTLS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHHHHHHHHH
Confidence 49999999999999999999986421 024689999886542 123445554422 11221 1221
Q ss_pred HhhhhcCCchhhHHHHHhHHHHHhcCCCCChh--HHHHHHHHHHhccchhhhHHHHHHHcCCCccccccccCccCCCCCH
Q 003389 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPE--IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345 (824)
Q Consensus 268 f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~rgLSG 345 (824)
........-.-.+ + .++. .+. ....+..+|+.+++.+..--.|++. ..-+|+
T Consensus 254 ~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~ 307 (364)
T 2qtf_A 254 EAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-IDKING 307 (364)
T ss_dssp GGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCS
T ss_pred HHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCc
Confidence 1100000000000 0 0000 110 0112345677777765443333432 223788
Q ss_pred HHHHHHHHH----HHH-HcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 003389 346 GQKKRVTTG----EML-VGTANVLYMDEISTGLDSSTTFQICKFLKQMVH 390 (824)
Q Consensus 346 GqrqRvsIA----~aL-v~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~ 390 (824)
|+++|+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 308 ~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 308 DLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 888988887 444 333344 89999999999999999988764
No 173
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.13 E-value=4.6e-07 Score=98.59 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=61.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCC---------C---CceEEEE-ec
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---------P---QRTCAYI-SQ 252 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~---------~---~~~i~yv-~Q 252 (824)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998765 799999887653211 1 3458888 77
Q ss_pred CCCCCCCCCHHHHHHHh
Q 003389 253 HDLHHGEMTVRETLDFS 269 (824)
Q Consensus 253 ~d~~~~~lTV~E~L~f~ 269 (824)
.....|..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555667766543
No 174
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.11 E-value=8.1e-07 Score=88.47 Aligned_cols=27 Identities=37% Similarity=0.600 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.09 E-value=3.1e-07 Score=96.57 Aligned_cols=52 Identities=37% Similarity=0.406 Sum_probs=36.8
Q ss_pred hhhccc-ccCcccccccccceeeEEeC---CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 171 LGLLHL-VPSKKRSVRILKDVSGIVKP---SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 171 l~~~~~-~~~~~~~~~IL~~vs~~I~~---Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.+.++ .+.+.+..++|+|+|+.|++ |+.++|+|+|||||||+.++|++.+.
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp --------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344444 44442456799999999999 99999999999999999999998764
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.05 E-value=3e-07 Score=92.57 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=45.0
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceE--eeCCcccC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--TYCGHELN 239 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I--~~nG~~~~ 239 (824)
..+..+.++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 3456677888889999999999999999999999999986 3 6887 88887664
No 177
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.05 E-value=7e-07 Score=93.60 Aligned_cols=62 Identities=24% Similarity=0.118 Sum_probs=46.9
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh---cCcCCCCCCcceEe--------eCCcccCCCC----CCceEEEE
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA---GKLGKDLRASGKIT--------YCGHELNEFV----PQRTCAYI 250 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La---G~l~~~~~~sG~I~--------~nG~~~~~~~----~~~~i~yv 250 (824)
++++.+ ++|++++|+|||||||||++++|+ |+..++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 445444 789999999999999999999999 887776 99999 8998774321 12557888
Q ss_pred ecC
Q 003389 251 SQH 253 (824)
Q Consensus 251 ~Q~ 253 (824)
+|.
T Consensus 93 ~~~ 95 (252)
T 4e22_A 93 FVS 95 (252)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
No 178
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=1.8e-06 Score=86.80 Aligned_cols=39 Identities=33% Similarity=0.170 Sum_probs=25.1
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
...+++|||+.+++|++++|+|||||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999876
No 179
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.94 E-value=3e-06 Score=83.90 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=31.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
.+|++++|+||||||||||+++|++.+++. ..|.|.+..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeeccC
Confidence 368999999999999999999999987532 356665543
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.91 E-value=1.2e-07 Score=109.20 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=53.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCC---CceEEEEecCCC-CCCC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~~~i~yv~Q~d~-~~~~ 259 (824)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+... .+.+..++|... ..+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCC
Confidence 35789999999999 99999999999999999999864 6788999877643211 122344555432 2344
Q ss_pred CCHHHHH
Q 003389 260 MTVRETL 266 (824)
Q Consensus 260 lTV~E~L 266 (824)
+.+.|++
T Consensus 126 il~IDEI 132 (499)
T 2dhr_A 126 IVFIDEI 132 (499)
T ss_dssp EEEEECG
T ss_pred EEEEehH
Confidence 4444444
No 181
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.88 E-value=1.2e-05 Score=97.36 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~i 414 (824)
-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+... ...+++++..++...+.+++++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 489999999999999999999999999996 9998887777777765543 34677776555666777777753
No 182
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.85 E-value=3.5e-06 Score=86.89 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=36.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
++..++|++++|.|+||||||||+++|+|. .|+|.++|.+..
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~~ 55 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPVE 55 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCHH
Confidence 445579999999999999999999999987 588999887653
No 183
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.83 E-value=5.2e-05 Score=82.07 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=84.8
Q ss_pred cccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCCCCCCceEEEEecCCCCCCCCC
Q 003389 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (824)
Q Consensus 182 ~~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 261 (824)
.+..-|+++.+-+++|+++.|.|+||+|||||+..++..... .| ..+.|++-+ ++
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----~g---------------~~vl~~slE------~s 107 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----ND---------------DVVNLHSLE------MG 107 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----TT---------------CEEEEEESS------SC
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cC---------------CeEEEEECC------CC
Confidence 345678888888999999999999999999999988753211 11 235666533 45
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHhHHHHHhcCCCCChhHHHHHHHHHHhccchhhhHHHHHHHcCCC--ccccccccCcc
Q 003389 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMVGDEM 339 (824)
Q Consensus 262 V~E~L~f~a~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~ 339 (824)
..+...=... ...|++ +..+ |.
T Consensus 108 ~~~l~~R~~~---------------------------------------------------~~~~i~~~~l~~---~~-- 131 (315)
T 3bh0_A 108 KKENIKRLIV---------------------------------------------------TAGSINAQKIKA---AR-- 131 (315)
T ss_dssp HHHHHHHHHH---------------------------------------------------HHTTCCHHHHHS---CH--
T ss_pred HHHHHHHHHH---------------------------------------------------HHcCCCHHHHhc---CC--
Confidence 4443211000 000111 0000 00
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE--EEEE
Q 003389 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT--MIVA 399 (824)
Q Consensus 340 ~rgLSGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~t--vIis 399 (824)
..||+++++|+..|...+.++++++.|+|... ..+|...++++.+..+.. +|++
T Consensus 132 -~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVI 187 (315)
T 3bh0_A 132 -RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMI 187 (315)
T ss_dssp -HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEE
Confidence 12899999999999888888999999998643 445677777776655656 6664
No 184
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.79 E-value=4.5e-06 Score=92.71 Aligned_cols=44 Identities=34% Similarity=0.316 Sum_probs=39.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~ 233 (824)
..+|+++|+.+++|++++|+||||||||||+++|+|.+ +|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999864 577665
No 185
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.76 E-value=5.6e-05 Score=83.17 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEE
Q 003389 342 GISGGQKKRVTTGEMLVGTANVLYMD-EISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (824)
Q Consensus 342 gLSGGqrqRvsIA~aLv~~p~iLlLD-EPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi 400 (824)
.+|+||+|++. +.+...++-++++| ++..|+|......+++.+++... +..++++.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 48999998876 55556777889999 99999999998888888877643 55666655
No 186
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.72 E-value=7.7e-06 Score=82.42 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=35.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
.++|++++|+|+||||||||+++|++.+.+. .|+|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccCc
Confidence 5689999999999999999999999998764 77887766553
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.71 E-value=1.2e-05 Score=78.54 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=31.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
.+|++++|+||||||||||+++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCccc
Confidence 468999999999999999999999874 6677776554
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.71 E-value=0.00018 Score=76.38 Aligned_cols=27 Identities=48% Similarity=0.760 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.-++|.||||+|||||+++|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999754
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.70 E-value=3.3e-05 Score=87.61 Aligned_cols=96 Identities=13% Similarity=0.231 Sum_probs=61.4
Q ss_pred cCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcCeEEE-EcCCeEEEecChh--hHHH-
Q 003389 359 GTANVLYMDEISTGLDS-STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL-LSEGQIVYQGPRD--NVLE- 433 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs-~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD~iil-L~~G~iv~~G~~~--~~~~- 433 (824)
.+|++||+||+..-.+. .+...+.+.+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..++++ +..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 37899999999887664 677788888888764 4778888877765543333333332 4567777766653 2222
Q ss_pred ---HHHHcCCCCCCCCCHHHHHHHhhc
Q 003389 434 ---FFEHMGFKCPERKGVADFLQEVTS 457 (824)
Q Consensus 434 ---~f~~~G~~~p~~~~~adfl~~v~s 457 (824)
..+..|...|+ ...+++.+.+.
T Consensus 272 L~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 272 ARKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 33445665554 45677766543
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.69 E-value=1.9e-05 Score=80.09 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=27.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
No 191
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.68 E-value=0.00014 Score=80.08 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=34.3
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC--cCCCCCCcceEeeCCc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK--LGKDLRASGKITYCGH 236 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~--l~~~~~~sG~I~~nG~ 236 (824)
..+|+++++.++ .++|+|++|||||||+++|+|. ++.+ +|.++-.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~---~~~vT~~p~ 72 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG---SGIVTRRPL 72 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC---SSSCCCSCE
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC---CCcccCcce
Confidence 458999999998 8999999999999999999994 4444 666654443
No 192
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=0.00016 Score=79.26 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.8
Q ss_pred ccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 186 IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455443 67999999999999999999999998874
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=2e-05 Score=79.66 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=26.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998865
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.66 E-value=7.6e-06 Score=97.55 Aligned_cols=48 Identities=31% Similarity=0.331 Sum_probs=35.7
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccCC
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~ 240 (824)
|+.+++|+.++|+|++|+|||||++.|++...+ ....|+| .+|..+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV-EEGTTTTD 50 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG-GGTCCSSC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee-cCCccccc
Confidence 356788999999999999999999999987554 1237887 66665543
No 195
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.64 E-value=6.8e-06 Score=89.35 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=32.8
Q ss_pred cccccceeeEEeCCe------EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 184 VRILKDVSGIVKPSR------MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge------~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+.|++++..+..++ +++|+||||||||||+++|++++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 446666666666655 9999999999999999999999864
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.62 E-value=2.8e-05 Score=78.22 Aligned_cols=30 Identities=27% Similarity=0.203 Sum_probs=27.0
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.+++|++++|+|+||||||||++.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999875
No 197
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.58 E-value=0.00022 Score=77.42 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=30.2
Q ss_pred cccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 185 RILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 185 ~IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..|+.+= +-+++|+++.|.||||+|||||+..++..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3455543 67999999999999999999999998864
No 198
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.56 E-value=1.4e-05 Score=93.04 Aligned_cols=44 Identities=32% Similarity=0.364 Sum_probs=37.8
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc-eEe-eCCccc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG-KIT-YCGHEL 238 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG-~I~-~nG~~~ 238 (824)
..+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 357899999999999999999999999999875 65 785 888654
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.55 E-value=0.00047 Score=75.40 Aligned_cols=44 Identities=5% Similarity=0.058 Sum_probs=31.6
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEccC
Q 003389 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHI--LDVTMIVALLQP 403 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~--~~~tvIisi~q~ 403 (824)
.+|.+|++||+... |......+.+.+.+.... .+.++|++.+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 888888887777665431 356677666654
No 200
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.47 E-value=4e-05 Score=74.44 Aligned_cols=27 Identities=44% Similarity=0.643 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
No 201
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.43 E-value=0.00011 Score=78.85 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHH--cCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q 003389 343 ISGGQKKRVTTGEMLV--GTANVLYMDEISTGLDSST-TFQICKFLKQMVHILD 393 (824)
Q Consensus 343 LSGGqrqRvsIA~aLv--~~p~iLlLDEPTsGLDs~t-~~~I~~~L~~l~~~~~ 393 (824)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 888886 5667776 78999999 7899876 6677788888876444
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.42 E-value=0.00053 Score=71.25 Aligned_cols=35 Identities=37% Similarity=0.700 Sum_probs=25.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.++++++.+++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 456666666555 89999999999999999998764
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.41 E-value=2e-05 Score=86.23 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=43.1
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
..+++++++.+++|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~~d 93 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEeec
Confidence 45889999999999999999999999999999999988654 5666655443
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.38 E-value=0.00081 Score=76.14 Aligned_cols=39 Identities=23% Similarity=0.494 Sum_probs=33.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 186 G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 186 GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345678888889999999999999999999999888654
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.32 E-value=0.00056 Score=77.15 Aligned_cols=37 Identities=30% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
++.+++++|||||||||++..|++.+.+. .++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 68999999999999999999999988653 45555533
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.31 E-value=0.00019 Score=76.96 Aligned_cols=30 Identities=43% Similarity=0.620 Sum_probs=26.6
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++++..++|.||||+|||||+++|++.+
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999865
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.29 E-value=0.00019 Score=87.33 Aligned_cols=33 Identities=48% Similarity=0.690 Sum_probs=29.2
Q ss_pred eeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 191 s~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++.+++|+.++|.||||+|||||+++|+|.+..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 346889999999999999999999999998643
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.28 E-value=0.00013 Score=70.26 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=24.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+.++.+.+| +++|+|||||||||+|++|.-.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 444555554 9999999999999999999743
No 209
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.26 E-value=7.8e-05 Score=81.91 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=35.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcccC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~ 239 (824)
+++..++|+|+||||||||+|.|+|.+.+. .|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecCC
Confidence 467899999999999999999999988765 788877766543
No 210
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.25 E-value=3.9e-05 Score=78.03 Aligned_cols=57 Identities=26% Similarity=0.190 Sum_probs=39.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEee--------CCcccCCC----CCCceEEEEecC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY--------CGHELNEF----VPQRTCAYISQH 253 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~--------nG~~~~~~----~~~~~i~yv~Q~ 253 (824)
+.+++|+|||||||||+.++|++.+......+|+|.. +|.++... ...+.+++++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 5689999999999999999999876321123788877 66655320 012446677765
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.25 E-value=7.1e-05 Score=73.48 Aligned_cols=40 Identities=35% Similarity=0.362 Sum_probs=31.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc--eEeeCCccc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHEL 238 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG--~I~~nG~~~ 238 (824)
++|++++|+|++||||||++++|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 47999999999999999999999998754 34 556666544
No 212
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.19 E-value=0.0054 Score=67.42 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=28.9
Q ss_pred ccccee--eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 186 ILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 186 IL~~vs--~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-|+.+- +=+++|+++.|.||||+|||||...++...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344432 468999999999999999999998887543
No 213
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.18 E-value=8.8e-05 Score=86.34 Aligned_cols=48 Identities=29% Similarity=0.499 Sum_probs=40.9
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCc
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~ 236 (824)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEeccc
Confidence 4677788877 89999999999999999999999998765 788877763
No 214
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.11 E-value=0.00019 Score=78.20 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++++.++|.||+|+|||||++.+++.+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987643
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.11 E-value=0.00018 Score=74.23 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=27.6
Q ss_pred cccceeeEEe---CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 186 ILKDVSGIVK---PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 186 IL~~vs~~I~---~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3677777776 9999999999999999999999998753
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.02 E-value=0.00016 Score=72.11 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=31.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 458899999888885 689999999999999999874
No 217
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.00026 Score=72.83 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchhHHhhcC
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e~~~lfD 412 (824)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+... .-.+++++-.-+.+...++|+
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTT
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcC
Confidence 445555542 23578889999999965 7887776555555554432 234566665555444444444
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.00 E-value=0.00013 Score=73.67 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=35.4
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcc--eEeeCCccc
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG--KITYCGHEL 238 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG--~I~~nG~~~ 238 (824)
.+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDNI 65 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChHH
Confidence 35689999999999999999999999988753 56 677776543
No 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.00 E-value=0.00057 Score=77.27 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC------C---CCCcceEeeCCccc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGK------D---LRASGKITYCGHEL 238 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~------~---~~~sG~I~~nG~~~ 238 (824)
-.++|+|+||+|||||++.|+|.... . ....|.+.++|+++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 47999999999999999999998531 0 02479999999865
No 220
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.99 E-value=0.00053 Score=66.68 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 221
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.98 E-value=0.0035 Score=67.50 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=28.7
Q ss_pred ccccee-eEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 186 ILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 186 IL~~vs-~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
-|+.+- +-+++|+++.|.||||+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 6799999999999999999999998875
No 222
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.98 E-value=0.002 Score=68.48 Aligned_cols=28 Identities=46% Similarity=0.625 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
|...++|.||||+|||||.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4468999999999999999999998754
No 223
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.94 E-value=0.00059 Score=73.45 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=32.5
Q ss_pred cCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCch
Q 003389 359 GTANVLYMDEIST-GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (824)
Q Consensus 359 ~~p~iLlLDEPTs-GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~ 405 (824)
.++.+||+||+-. ..+..+...+...+..+.. .+..+|++...+..
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 4689999999866 2344777888888887765 35667776665543
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.92 E-value=0.00046 Score=68.17 Aligned_cols=35 Identities=34% Similarity=0.386 Sum_probs=21.0
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 5689999999999999999974
No 225
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.90 E-value=0.0003 Score=77.74 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=42.5
Q ss_pred hhcccccCccccccccc--------------ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 172 GLLHLVPSKKRSVRILK--------------DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 172 ~~~~~~~~~~~~~~IL~--------------~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
...++.+.+...+.+|+ |+++.|.+|+.++|+||+|+|||||++.|++..
T Consensus 135 ~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 135 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34455556666677888 899999999999999999999999999999865
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.86 E-value=0.0018 Score=67.97 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=24.4
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++.-++|.||+|+|||||+++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999764
No 227
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.83 E-value=0.0091 Score=67.60 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=32.6
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+..-|+.+.+=+.+|+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 44568888778999999999999999999998888753
No 228
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.83 E-value=0.00048 Score=68.08 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.4
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999865
No 229
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.80 E-value=0.00044 Score=68.15 Aligned_cols=29 Identities=41% Similarity=0.546 Sum_probs=26.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|.++.|+|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999998764
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.80 E-value=0.00044 Score=69.43 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45889999999999999999999998763
No 231
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.78 E-value=0.00065 Score=68.62 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=24.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 189 ~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++.+.+ .+++|+|||||||||++++|.-.+
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555 499999999999999999986433
No 232
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.77 E-value=0.00046 Score=77.70 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=39.9
Q ss_pred cceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 188 ~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 678887 89999999999999999999999999775 78888876654
No 233
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.77 E-value=0.00016 Score=79.72 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=29.4
Q ss_pred ccccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
.+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~ 72 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAA 72 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCC
Confidence 355788999887 999999999999999998864432 44444444
No 234
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.76 E-value=0.0023 Score=65.87 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=41.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+++++++||.-. |+. ++++.++.+++ .+..+|++=+ .+++++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 654 35566677776 4889999877 56788899999999986
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.74 E-value=0.00058 Score=67.53 Aligned_cols=40 Identities=28% Similarity=0.261 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
.+++|+|+||||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999998765432234777776654
No 236
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.66 E-value=0.00024 Score=77.98 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=34.1
Q ss_pred ccccceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcC
Q 003389 185 RILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~--~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888888889988 99999999999999999999764
No 237
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.66 E-value=0.00082 Score=67.27 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh--HHhhcCeEEEEc
Q 003389 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE--TYDLFDDIILLS 418 (824)
Q Consensus 344 SGGqrqRvsIA~aLv~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e--~~~lfD~iilL~ 418 (824)
+.|+.+|..+++.+..+|..+.++ ++.+++.....+.+.+++. .+.++|+..+ ...+ ....||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~-~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVP-LLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECT-TTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEec-hhhhcCcHhhCCEEEEEE
Confidence 578888888888888877654333 2345555555554444332 2446665543 2223 256788888874
No 238
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.00014 Score=79.13 Aligned_cols=41 Identities=32% Similarity=0.602 Sum_probs=36.4
Q ss_pred ccccccceeeEEeCCeE--EEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 183 SVRILKDVSGIVKPSRM--TLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 183 ~~~IL~~vs~~I~~Ge~--~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
...+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34588888889999998 999999999999999999998754
No 239
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.0068 Score=61.75 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=42.4
Q ss_pred HcCCcEeEEeCCCC----CCCHHHHHHHHHHHHHHHHhCCcEEEEEEccCchh---------HHhhcCeEEEEc
Q 003389 358 VGTANVLYMDEIST----GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE---------TYDLFDDIILLS 418 (824)
Q Consensus 358 v~~p~iLlLDEPTs----GLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~~~e---------~~~lfD~iilL~ 418 (824)
-.+|+++++|--+. .-|.....+++..|++++++.+++++++.+...+. ....+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34789999996542 12455667788889999988899999886543221 345689888885
No 240
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.61 E-value=0.00064 Score=70.86 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=35.5
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCccc
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~ 238 (824)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .|.+.++|..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHH
Confidence 333433 566789999999999999999999998764 24566777554
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.60 E-value=0.00034 Score=75.13 Aligned_cols=46 Identities=28% Similarity=0.230 Sum_probs=38.1
Q ss_pred cc-eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 188 KD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 188 ~~-vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
++ +++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 777766 9999999999999999999999998764 6677776554
No 242
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.59 E-value=0.0088 Score=61.25 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.++|+|++|+|||||++.|.|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4799999999999999999987553
No 243
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.57 E-value=0.031 Score=61.60 Aligned_cols=29 Identities=41% Similarity=0.665 Sum_probs=25.6
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+-+++|+++.|.||+|+|||||...++..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 46899999999999999999999877643
No 244
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.49 E-value=0.0011 Score=73.81 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=34.5
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC-----------cCCCCCCcceEeeCCcc
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGK-----------LGKDLRASGKITYCGHE 237 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~-----------l~~~~~~sG~I~~nG~~ 237 (824)
+-+.++.|..++|+|+||+|||||+++|+|. ..|. .|.|.++|..
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~---~g~v~v~~~r 70 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPN---ESRVPVPDER 70 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCS---EEEEECCCHH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCce---eEEEEECCcc
Confidence 3446678889999999999999999999997 3333 7888887753
No 245
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.49 E-value=0.0011 Score=66.15 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003389 199 MTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG 219 (824)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 246
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.48 E-value=0.033 Score=63.78 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=31.2
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..-|+.+-+-+.+|+++.|.|+||+|||||+.-++-.
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4567777667999999999999999999998877744
No 247
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.47 E-value=0.011 Score=60.89 Aligned_cols=27 Identities=52% Similarity=0.743 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||.++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 455668999999999999999999765
No 248
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.41 E-value=0.0052 Score=79.49 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.3
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
=+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987543
No 249
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.37 E-value=0.015 Score=63.54 Aligned_cols=27 Identities=41% Similarity=0.719 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999754
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.37 E-value=0.0011 Score=66.25 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..+++|+|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999875
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.36 E-value=0.0016 Score=63.73 Aligned_cols=27 Identities=44% Similarity=0.695 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 252
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.34 E-value=0.0015 Score=63.57 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.32 E-value=0.0015 Score=62.89 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997653
No 254
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.31 E-value=0.038 Score=59.60 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..|..-++|.||+|+|||||.++++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4567789999999999999999999765
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.26 E-value=0.0019 Score=62.74 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997763
No 256
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.22 E-value=0.0022 Score=61.48 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.10 E-value=0.0023 Score=65.70 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-++|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999765
No 258
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.033 Score=62.00 Aligned_cols=29 Identities=38% Similarity=0.628 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++|-.=++|-||||+|||+|.++||+...
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 34444589999999999999999998754
No 259
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.04 E-value=0.024 Score=61.14 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 192 GIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 192 ~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
+=+++| ++.|-||||+|||||+.-++
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHH
Confidence 567889 89999999999999955443
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.02 E-value=0.0032 Score=61.50 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+|.++.|.|++||||||+.+.|+-.+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997653
No 261
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.02 E-value=0.0029 Score=62.13 Aligned_cols=27 Identities=41% Similarity=0.587 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998654
No 262
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.99 E-value=0.0029 Score=69.84 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.4
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~La 218 (824)
+++..+.+.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46667777674 99999999999999999986
No 263
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.98 E-value=0.0026 Score=65.80 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-+++|.|||||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999665
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.98 E-value=0.0073 Score=65.59 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.++..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
No 265
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.90 E-value=0.0032 Score=65.74 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++|+||||||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 266
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.88 E-value=0.0036 Score=61.16 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 267
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.87 E-value=0.0043 Score=61.51 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999765
No 268
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.84 E-value=0.076 Score=68.82 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=29.8
Q ss_pred cccccee--eEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 185 ~IL~~vs--~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.-|+.+- +=+++|+++.|.||||+|||||..-++..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3466665 46999999999999999999998877643
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.83 E-value=0.0044 Score=60.62 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998665
No 270
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.83 E-value=0.0035 Score=61.96 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998763
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.82 E-value=0.0042 Score=59.30 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 003389 199 MTLLLGPPGAGKTTLMLAL 217 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~L 217 (824)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.81 E-value=0.0049 Score=61.25 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999987653
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.78 E-value=0.005 Score=65.55 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG 235 (824)
..|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 4578999999999999999999986542 24556655
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.72 E-value=0.0053 Score=59.33 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG 219 (824)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.69 E-value=0.0046 Score=60.31 Aligned_cols=26 Identities=50% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998554
No 276
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.69 E-value=0.0039 Score=60.59 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 277
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.061 Score=60.47 Aligned_cols=29 Identities=48% Similarity=0.801 Sum_probs=24.8
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++-+=++|-||||+|||+|.++||+.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45566699999999999999999998754
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.66 E-value=0.0057 Score=61.65 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 279
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.66 E-value=0.019 Score=57.42 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=40.9
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+.+++++||.-- +|+. +++.+++++.. +..+|++-+ .+++++..++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 468999999654 6643 36677777764 889999876 67788999999998875
No 280
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.64 E-value=0.016 Score=66.33 Aligned_cols=28 Identities=54% Similarity=0.833 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++..-++|.||||+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4556679999999999999999998653
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.62 E-value=0.0053 Score=60.35 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998654
No 282
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.62 E-value=0.0056 Score=61.06 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 283
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.60 E-value=0.0049 Score=60.65 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.55 E-value=0.0025 Score=62.91 Aligned_cols=28 Identities=29% Similarity=0.578 Sum_probs=24.2
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998654
No 285
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.54 E-value=0.0071 Score=59.15 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998543
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.52 E-value=0.0063 Score=60.71 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999765
No 287
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.44 E-value=0.0076 Score=60.91 Aligned_cols=27 Identities=41% Similarity=0.624 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|..+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999998654
No 288
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.43 E-value=0.0027 Score=63.47 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.41 E-value=0.0079 Score=59.43 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999864
No 290
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.40 E-value=0.0063 Score=60.73 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+.|+||||||||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 357899999999999999997654
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.38 E-value=0.0076 Score=58.80 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997654
No 292
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.31 E-value=0.013 Score=64.62 Aligned_cols=39 Identities=23% Similarity=0.183 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC-----C--C-CCCcceEeeCCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG-----K--D-LRASGKITYCGH 236 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~-----~--~-~~~sG~I~~nG~ 236 (824)
-.++|+|.||+|||||+++|+|... | + ....|.+.+++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 4689999999999999999998431 0 1 123688887763
No 293
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.30 E-value=0.16 Score=66.78 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=30.1
Q ss_pred cccccee--eEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 185 RILKDVS--GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 185 ~IL~~vs--~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-|+.+- +=+++|+++.|.||||+|||||+..++...
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466554 369999999999999999999988887543
No 294
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.26 E-value=0.049 Score=55.46 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=42.6
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+.+++++||.-- +|.. +++.+++++. .++.||++-+ .+++++..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 478999999876 6543 3467777766 4889999988 78899999999999886
No 295
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.24 E-value=0.0078 Score=63.11 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 296
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.16 E-value=0.0071 Score=58.78 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 297
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.15 E-value=0.015 Score=56.94 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999876654
No 298
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.09 E-value=0.012 Score=58.55 Aligned_cols=26 Identities=58% Similarity=0.804 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
No 299
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.08 E-value=0.01 Score=60.29 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998643
No 300
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.08 E-value=0.0087 Score=59.36 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999865
No 301
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.01 E-value=0.01 Score=55.97 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 302
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.011 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.-.++|+|++|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 303
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.98 E-value=0.0098 Score=56.24 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
No 304
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.98 E-value=0.012 Score=56.14 Aligned_cols=23 Identities=52% Similarity=0.793 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999998764
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.012 Score=55.71 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 306
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.95 E-value=0.0093 Score=66.02 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=33.3
Q ss_pred cCCcEeEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCcEEEEEEccCc
Q 003389 359 GTANVLYMDEISTGLD---SSTTFQICKFLKQMVHILDVTMIVALLQPA 404 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLD---s~t~~~I~~~L~~l~~~~~~tvIisi~q~~ 404 (824)
..|.++++||.=.=++ +.....+.+.+++..+ .|..++++++.|.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVI 308 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHH
Confidence 3588999999988774 6667777777887655 5777777765554
No 307
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.94 E-value=0.012 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 308
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.89 E-value=0.013 Score=57.55 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999766
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.88 E-value=0.012 Score=55.32 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++++|++|+|||||++.|.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 310
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.87 E-value=0.014 Score=59.56 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=24.7
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+++..++.|+|||||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998665
No 311
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.87 E-value=0.015 Score=60.75 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999764
No 312
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.86 E-value=0.012 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999764
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.85 E-value=0.012 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998763
No 314
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.84 E-value=0.013 Score=58.89 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999997653
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.84 E-value=0.013 Score=55.49 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 316
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.81 E-value=0.014 Score=58.57 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 317
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.81 E-value=0.015 Score=57.70 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
No 318
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.81 E-value=0.013 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 319
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.80 E-value=0.013 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998864
No 320
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.76 E-value=0.015 Score=56.62 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998654
No 321
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.76 E-value=0.02 Score=60.36 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|+||+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.74 E-value=0.014 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998764
No 323
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.74 E-value=0.015 Score=56.81 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.74 E-value=0.013 Score=55.49 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
No 325
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.74 E-value=0.014 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.72 E-value=0.016 Score=55.76 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 327
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.72 E-value=0.012 Score=59.41 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
No 328
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.72 E-value=0.018 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
+.-.++|+|++|+|||||++.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999875
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.72 E-value=0.014 Score=55.78 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.71 E-value=0.012 Score=57.32 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998654
No 331
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.70 E-value=0.013 Score=56.24 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 332
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.69 E-value=0.014 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999874
No 333
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.68 E-value=0.017 Score=59.66 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..++|.||+||||||+.+.|+-.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998554
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.67 E-value=0.016 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998544
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.65 E-value=0.015 Score=55.67 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 336
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.64 E-value=0.015 Score=57.55 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997654
No 337
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.61 E-value=0.014 Score=56.98 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998763
No 338
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.57 E-value=0.014 Score=56.76 Aligned_cols=22 Identities=55% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 339
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.56 E-value=0.019 Score=55.16 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999987653
No 340
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.55 E-value=0.015 Score=55.58 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999876
No 341
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.55 E-value=0.016 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.54 E-value=0.019 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 343
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.54 E-value=0.016 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 344
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.53 E-value=0.024 Score=61.17 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=31.9
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
...+|+....+ .|+-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 45889987777 8999999999999999999999864
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.50 E-value=0.017 Score=55.75 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 346
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.49 E-value=0.018 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 347
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.47 E-value=0.016 Score=56.29 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999998864
No 348
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.45 E-value=0.017 Score=59.74 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999999864
No 349
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.45 E-value=0.016 Score=56.07 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998763
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.42 E-value=0.018 Score=54.59 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 351
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.42 E-value=0.018 Score=58.13 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+|..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998655
No 352
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.41 E-value=0.018 Score=55.68 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 353
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.37 E-value=0.019 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
-++|+|++|+|||||++.|.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4799999999999999999987643
No 354
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.37 E-value=0.032 Score=56.29 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=28.8
Q ss_pred ccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 185 ~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..++..-. ...|..++|+||+|||||||...|+.+.
T Consensus 23 ~~lHa~~v-~~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLV-DIYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEE-EETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEE-EECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 35666444 4578999999999999999999998653
No 355
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.36 E-value=0.018 Score=56.13 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 356
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.32 E-value=0.02 Score=54.01 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 003389 200 TLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~ 220 (824)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 357
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.28 E-value=0.019 Score=54.83 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 358
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.28 E-value=0.19 Score=51.70 Aligned_cols=53 Identities=26% Similarity=0.251 Sum_probs=42.3
Q ss_pred cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEcc---------CchhHHhhcCeEEEEc
Q 003389 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ---------PAPETYDLFDDIILLS 418 (824)
Q Consensus 359 ~~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q---------~~~e~~~lfD~iilL~ 418 (824)
.+.+++++||.---.| +.+.++.++. .|+.||++-+. +.+++..++|.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987654 4455555544 58899999888 8899999999999885
No 359
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.26 E-value=0.02 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.24 E-value=0.02 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 361
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.24 E-value=0.021 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
No 362
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.23 E-value=0.014 Score=56.29 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 363
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.22 E-value=0.0083 Score=59.88 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.++|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 889999999999999999987654
No 364
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.22 E-value=0.019 Score=59.87 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.20 E-value=0.022 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 366
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.14 E-value=0.021 Score=56.92 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
No 367
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.11 E-value=0.022 Score=55.29 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998763
No 368
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.11 E-value=0.024 Score=60.72 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 369
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.06 E-value=0.026 Score=57.37 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 370
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.06 E-value=0.022 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 371
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.04 E-value=0.024 Score=54.83 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.--++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998754
No 372
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.04 E-value=0.024 Score=55.83 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 373
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.03 E-value=0.0095 Score=72.43 Aligned_cols=43 Identities=37% Similarity=0.501 Sum_probs=34.3
Q ss_pred eeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCCcceEeeCCcc
Q 003389 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237 (824)
Q Consensus 190 vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~ 237 (824)
.++.+.+++.++|.||||+|||||.++|++.+.. +-+.+++.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~~~ 546 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE 546 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCCSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEechH
Confidence 3567789999999999999999999999998743 345555544
No 374
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.03 E-value=0.023 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 375
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.03 E-value=0.025 Score=60.63 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999863
No 376
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.03 E-value=0.026 Score=57.06 Aligned_cols=23 Identities=48% Similarity=0.730 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.|+|||||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999655
No 377
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.02 E-value=0.028 Score=57.32 Aligned_cols=26 Identities=46% Similarity=0.662 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
No 378
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.99 E-value=0.085 Score=69.28 Aligned_cols=38 Identities=29% Similarity=0.346 Sum_probs=32.5
Q ss_pred ccccceee--EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 185 RILKDVSG--IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 185 ~IL~~vs~--~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.-|+.+-+ =++||+++.|-|+||+|||||+..++....
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a 757 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34777775 799999999999999999999999987653
No 379
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.97 E-value=0.025 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998764
No 380
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.023 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 381
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.95 E-value=0.025 Score=55.05 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 382
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.93 E-value=0.027 Score=58.25 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 383
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.90 E-value=0.026 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 384
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.90 E-value=0.027 Score=58.87 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 385
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.90 E-value=0.023 Score=59.63 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
No 386
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.90 E-value=0.084 Score=64.53 Aligned_cols=25 Identities=48% Similarity=0.616 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.-++|.||+|+|||+|.++|+..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998764
No 387
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.90 E-value=0.024 Score=62.58 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 003389 200 TLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 200 ~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++|+|+||+|||||+++|+|..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999864
No 388
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.89 E-value=0.029 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
..+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
No 389
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.89 E-value=0.022 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.++|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998653
No 390
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.88 E-value=0.025 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 391
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.88 E-value=0.025 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 392
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.88 E-value=0.024 Score=54.46 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+..+.|.||+|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355779999999999999999987754
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.85 E-value=0.028 Score=56.51 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
No 394
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.84 E-value=0.028 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 395
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.84 E-value=0.026 Score=60.02 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 396
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.83 E-value=0.027 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 397
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.81 E-value=0.036 Score=60.27 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.++.|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999999765
No 398
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.80 E-value=0.026 Score=58.06 Aligned_cols=30 Identities=27% Similarity=0.353 Sum_probs=22.5
Q ss_pred EEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 193 ~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+..+|.++.|.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999987764
No 399
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.78 E-value=0.027 Score=58.28 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 400
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.76 E-value=0.027 Score=59.26 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 401
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.74 E-value=0.032 Score=58.92 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG 219 (824)
.++.|+|+|||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 402
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.73 E-value=0.03 Score=54.54 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.72 E-value=0.029 Score=56.13 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 404
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.70 E-value=0.027 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999764
No 405
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.69 E-value=0.029 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 406
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.66 E-value=0.029 Score=53.97 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999853
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.031 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 408
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.028 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.64 E-value=0.031 Score=55.11 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 410
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.63 E-value=0.031 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 411
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.62 E-value=0.029 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 412
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.031 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999854
No 413
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.60 E-value=0.031 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
No 414
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.59 E-value=0.032 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 415
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.58 E-value=0.025 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 416
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.57 E-value=0.032 Score=55.18 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
--++|+|++|+|||||++.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 417
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.033 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 418
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.55 E-value=0.035 Score=62.14 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.+.+++.|+|+|||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999998643
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.52 E-value=0.033 Score=55.07 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 420
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.51 E-value=0.034 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 421
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.50 E-value=0.036 Score=58.60 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 003389 197 SRMTLLLGPPGAGKTTLMLALA 218 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~La 218 (824)
..+++|.|++||||||+.+.|+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 422
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.50 E-value=0.042 Score=55.79 Aligned_cols=29 Identities=38% Similarity=0.421 Sum_probs=25.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+|.++.|.|++||||||+.+.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999887754
No 423
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.49 E-value=0.019 Score=57.48 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 424
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.49 E-value=0.034 Score=54.78 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
--++|+|++|+|||||++.|.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 425
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.48 E-value=0.034 Score=56.24 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 426
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.48 E-value=0.034 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 427
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.47 E-value=0.036 Score=55.17 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.44 E-value=0.03 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 429
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.43 E-value=0.013 Score=60.74 Aligned_cols=33 Identities=39% Similarity=0.696 Sum_probs=25.6
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.++....++| ++|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444444555 7899999999999999999865
No 430
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.40 E-value=0.016 Score=62.36 Aligned_cols=41 Identities=5% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEccC
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~q~ 403 (824)
+++++++|| ...|+......+.+.+.+... +..+|++..++
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~--~~~~il~~~~~ 173 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG--VTRFCLICNYV 173 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT--TEEEEEEESCG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC--CceEEEEeCch
Confidence 567999999 678898888888888877532 33444444443
No 431
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.38 E-value=0.041 Score=59.49 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=28.1
Q ss_pred ccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcC
Q 003389 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 187 L~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
|+.+-+-+.+|..+.|.||||+|||||...++..
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333367899999999999999999999999753
No 432
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.37 E-value=0.032 Score=58.73 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 433
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.34 E-value=0.038 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
-++|+|++|+|||||++.+.|...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4899999999999999999986543
No 434
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.30 E-value=0.035 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988653
No 435
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.29 E-value=0.029 Score=53.74 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 436
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.036 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999754
No 437
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.27 E-value=0.033 Score=55.89 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998764
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.24 E-value=0.041 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
No 439
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.22 E-value=0.031 Score=58.14 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999998765
No 440
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.20 E-value=0.041 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 48999999999999999998653
No 441
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.20 E-value=0.027 Score=54.25 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
No 442
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.15 E-value=0.024 Score=60.42 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
No 443
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.13 E-value=0.038 Score=55.14 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 444
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.13 E-value=0.038 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
--++|+|++|+|||||++.+.+.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 445
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.10 E-value=0.042 Score=54.97 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 446
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.09 E-value=0.042 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.07 E-value=0.042 Score=59.43 Aligned_cols=25 Identities=48% Similarity=0.708 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
No 448
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.04 E-value=0.04 Score=60.04 Aligned_cols=25 Identities=32% Similarity=0.635 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997653
No 449
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.99 E-value=0.041 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999754
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.94 E-value=0.05 Score=56.21 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+|.++.|.|++||||||+.+.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999987653
No 451
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.90 E-value=0.043 Score=55.95 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999988754
No 452
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.88 E-value=0.079 Score=52.21 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=26.8
Q ss_pred cccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhc
Q 003389 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 186 IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG 219 (824)
.+|. +..--.|.-++|.|+||+|||||...|..
T Consensus 6 ~lHa-s~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHA-NFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEES-EEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4444 44556799999999999999999998874
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.86 E-value=0.061 Score=57.95 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
No 454
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.82 E-value=0.056 Score=53.48 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=35.5
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEc---------cCchhHHhhcCeEEEEc
Q 003389 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL---------QPAPETYDLFDDIILLS 418 (824)
Q Consensus 360 ~p~iLlLDEPTsGLDs~t~~~I~~~L~~l~~~~~~tvIisi~---------q~~~e~~~lfD~iilL~ 418 (824)
+++++++||.=. +|+ .+++.|+.+++. +..++++-+ .+.+....++|.|.-|.
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 568999999854 543 366677777764 778887655 22345566788776664
No 455
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.81 E-value=0.058 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
No 456
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.76 E-value=0.054 Score=57.19 Aligned_cols=28 Identities=43% Similarity=0.667 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++.-++|.||+|+|||||.++++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566799999999999999999987763
No 457
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.049 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 458
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.70 E-value=0.047 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++...++|.||||+|||+|.++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344578888999999999999999765
No 459
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.058 Score=54.51 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 460
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.59 E-value=0.061 Score=56.36 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
-.++++|.||+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5789999999999999999998754
No 461
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.59 E-value=0.027 Score=56.16 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.|.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998854
No 462
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.58 E-value=0.053 Score=56.44 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 463
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.54 E-value=0.063 Score=54.52 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
+|.++.+-|++||||||+.+.|+..+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999987753
No 464
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.49 E-value=0.055 Score=50.95 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.-+.|.||+|+|||+|.++|+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34558999999999999999998764
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.49 E-value=0.039 Score=53.61 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 003389 199 MTLLLGPPGAGKTTLMLALAG 219 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG 219 (824)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999964
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.49 E-value=0.054 Score=53.57 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999865
No 467
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.44 E-value=0.058 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.44 E-value=0.058 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 469
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.43 E-value=0.056 Score=56.48 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 470
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.40 E-value=0.075 Score=54.44 Aligned_cols=27 Identities=37% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+|.++.+.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987764
No 471
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.39 E-value=0.028 Score=55.14 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=4.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 472
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.23 E-value=0.067 Score=52.54 Aligned_cols=23 Identities=52% Similarity=0.816 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.+.|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998764
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.17 E-value=0.07 Score=57.28 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.|..-++|.||+|+|||+|.++++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 466679999999999999999998764
No 474
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.17 E-value=0.07 Score=55.56 Aligned_cols=27 Identities=41% Similarity=0.581 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||.++|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345578999999999999999999753
No 475
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.16 E-value=0.078 Score=60.15 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=30.6
Q ss_pred cccccceeeEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 184 ~~IL~~vs~~I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
..+++.+ ..+-+|+.++|+||||+|||||++.|++...
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 3456666 5566799999999999999999999987643
No 476
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.11 E-value=0.063 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 477
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.11 E-value=0.071 Score=54.92 Aligned_cols=24 Identities=42% Similarity=0.556 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 198 e~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
--++|+||+||||||+.+.|+-.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998655
No 478
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.08 E-value=0.05 Score=55.12 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+++...+++.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555578999999999999999999765
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.05 E-value=0.072 Score=57.73 Aligned_cols=29 Identities=38% Similarity=0.707 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
.+|..++|.||+|+|||||.++++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35789999999999999999999987653
No 480
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.04 E-value=0.068 Score=60.18 Aligned_cols=29 Identities=38% Similarity=0.674 Sum_probs=24.7
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+++-+=++|-||||+|||+|.++||+...
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 45556789999999999999999998754
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.04 E-value=0.065 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 482
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.03 E-value=0.063 Score=60.69 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999885
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.98 E-value=0.088 Score=56.61 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
..++.|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999664
No 484
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.94 E-value=0.072 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 003389 199 MTLLLGPPGAGKTTLMLALAGK 220 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~ 220 (824)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 485
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.90 E-value=0.072 Score=60.02 Aligned_cols=29 Identities=52% Similarity=0.911 Sum_probs=25.1
Q ss_pred EeCCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 194 I~~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++|-.=++|.||||+|||+|.++||+...
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55667789999999999999999998754
No 486
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.67 E-value=0.091 Score=57.38 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
...++|+|++|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987763
No 487
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.64 E-value=0.081 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+.-+.|.||+|+|||||.++|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998763
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.51 E-value=0.099 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
++.-+.|.||+|+|||+|+++|+..+.
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997643
No 489
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.40 E-value=0.11 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999988763
No 490
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.39 E-value=0.093 Score=59.16 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcCC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~~ 223 (824)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987653
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.39 E-value=0.1 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
-.+++|+||+|||||||.+.|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 4588999999999999999999765
No 492
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.35 E-value=0.031 Score=63.29 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=24.4
Q ss_pred eEEeCCe--EEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 192 GIVKPSR--MTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 192 ~~I~~Ge--~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
-.++.|+ -+.|.||+|+|||||.++|+....
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444 489999999999999999998753
No 493
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.18 E-value=0.093 Score=57.19 Aligned_cols=26 Identities=46% Similarity=0.612 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++.-++|.||||+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999765
No 494
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.09 E-value=0.07 Score=58.18 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 495
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.08 E-value=0.12 Score=54.67 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 197 Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
+-.++++|.||+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 44689999999999999999998753
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.08 E-value=0.11 Score=56.49 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..+.|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 497
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.06 E-value=0.094 Score=58.35 Aligned_cols=41 Identities=12% Similarity=-0.119 Sum_probs=29.6
Q ss_pred hHHHHHHHcCCCccccccccCccCCCCCHHHHHHHHHHHHHHcCCcEeEE
Q 003389 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366 (824)
Q Consensus 317 ~~~~iL~~lgL~~~~dt~vg~~~~rgLSGGqrqRvsIA~aLv~~p~iLlL 366 (824)
.+..+++.++.... . ..+|.+|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 35667777776543 1 24899998888777777778988887
No 498
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.05 E-value=0.093 Score=57.32 Aligned_cols=27 Identities=48% Similarity=0.754 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCcHHHHHHHHhcCc
Q 003389 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 195 ~~Ge~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
++..-++|.||+|+|||||.++|+..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455668999999999999999999765
No 499
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.87 E-value=0.1 Score=58.67 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 003389 199 MTLLLGPPGAGKTTLMLALAGKL 221 (824)
Q Consensus 199 ~~aLlGpnGSGKSTLL~~LaG~l 221 (824)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 500
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.81 E-value=0.027 Score=60.43 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhcCcC
Q 003389 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (824)
Q Consensus 196 ~Ge~~aLlGpnGSGKSTLL~~LaG~l~ 222 (824)
.|.-+.|.||+|+|||||+++|+..+.
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 356899999999999999999998653
Done!