BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003390
(823 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/700 (57%), Positives = 505/700 (72%), Gaps = 27/700 (3%)
Query: 137 IYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREW 196
IY++DP L + H +YR RY I+K+EGGL FS+GY KFG D YREW
Sbjct: 13 IYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREW 72
Query: 197 APGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256
AP A+ A LIG+FNNWN M +++FG+W I + ++ +G P IPH S+VK G
Sbjct: 73 APAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKI-SHVNGKPAIPHNSKVKFRFRHGGG 131
Query: 257 I-KDSIPAWIKFSVQAPGEI--PYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHVGMS 313
D IPAWI+++ + PY+G+++DPP E+YVF+HP+P KP + RIYEAHVGMS
Sbjct: 132 AWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMS 191
Query: 314 STEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPD 373
EP ++TY F D+VLPRI+ YN VQ+MA+ EHSYYASFGYHVTNFFA SSR GTP+
Sbjct: 192 GEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPE 251
Query: 374 DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFD-GTDGH--YFHSGSRGYHWMWDS 430
DLK L+DKAH LGL VLMD+VHSHASNNV DGLN +D G + H YFH+G RGYH +WDS
Sbjct: 252 DLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDS 311
Query: 431 RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
RLFNY +WEVLRFLLSN R+W++E+ FDGFRFDGVTSM+Y HHG+ FTGNY EYF
Sbjct: 312 RLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLD 371
Query: 491 TDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWI 550
TDVDA+VY+ML N ++H L PEA + EDVSGMP C PV +GGVGFD+RL MAI D+WI
Sbjct: 372 TDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWI 431
Query: 551 ELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMA 609
+ LK K D W M IV T+TNRR+ EKC+AYAESHDQ++VGDKTIAF LMDK+MY M+
Sbjct: 432 DYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMS 491
Query: 610 LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFV 669
+P++P I+RGIAL KMI +TM LGG+ YLNFMGNEFGHPEWIDFPR
Sbjct: 492 DLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPR----------- 540
Query: 670 PGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRV 729
GNN+SYDKCRR++ L D D+LRY+ M FD+AM LEE++ F++S Q VS +E D+V
Sbjct: 541 EGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKV 600
Query: 730 IVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSL- 788
IVFERG+LVFVFNFH N +Y Y+VGC PGKY++ LDSD +FGG+ R+ H+ ++F+
Sbjct: 601 IVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSP 660
Query: 789 -------EGWYDDQPHSFLVYAPSRTAVVYALADEEEQPL 821
E ++++P+SF V +P RT V Y DE+ + L
Sbjct: 661 EGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREEL 700
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/700 (57%), Positives = 505/700 (72%), Gaps = 27/700 (3%)
Query: 137 IYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREW 196
IY++DP L + H +YR RY I+K+EGGL FS+GY KFG D YREW
Sbjct: 13 IYDLDPKLEEFKDHFNYRIKRYLDQKCLIEKHEGGLEEFSKGYLKFGINTVDGATIYREW 72
Query: 197 APGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256
AP A+ A LIG+FNNWN M +++FG+W I + ++ +G P IPH S+VK G
Sbjct: 73 APAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKI-SHVNGKPAIPHNSKVKFRFRHGGG 131
Query: 257 I-KDSIPAWIKFSVQAPGEI--PYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHVGMS 313
D IPAWI+++ + PY+G+++DPP E+YVF+HP+P KP + RIYEAHVGMS
Sbjct: 132 AWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMS 191
Query: 314 STEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPD 373
EP ++TY F D+VLPRI+ YN VQ+MA+ EHSYYASFGYHVTNFFA SSR GTP+
Sbjct: 192 GEEPEVSTYREFADNVLPRIRANNYNTVQLMAIMEHSYYASFGYHVTNFFAVSSRSGTPE 251
Query: 374 DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFD-GTDGH--YFHSGSRGYHWMWDS 430
DLK L+DKAH LGL VLMD+VHSHASNNV DGLN +D G + H YFH+G RGYH +WDS
Sbjct: 252 DLKYLVDKAHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDS 311
Query: 431 RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
RLFNY +WEVLRFLLSN R+W++E+ FDGFRFDGVTSM+Y HHG+ FTGNY EYF
Sbjct: 312 RLFNYANWEVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLD 371
Query: 491 TDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWI 550
TDVDA+VY+ML N ++H L PEA + EDVSGMP C PV +GGVGFD+RL MAI D+WI
Sbjct: 372 TDVDAIVYMMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWI 431
Query: 551 ELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMA 609
+ LK K D W M IV T+TNRR+ EKC+AYAESHDQ++VGDKTIAF LMDK+MY M+
Sbjct: 432 DYLKNKEDRKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMS 491
Query: 610 LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFV 669
+P++P I+RGIAL KMI +TM LGG+ YLNFMGNEFGHPEWIDFPR
Sbjct: 492 DLQPASPTINRGIALQKMIHFITMALGGDGYLNFMGNEFGHPEWIDFPR----------- 540
Query: 670 PGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRV 729
GNN+SYDKCRR++ L D D+LRY+ M FD+AM LEE++ F++S Q VS +E D+V
Sbjct: 541 EGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKV 600
Query: 730 IVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSL- 788
IVFERG+LVFVFNFH N +Y Y+VGC PGKY++ LDSD +FGG+ R+ H+ ++F+
Sbjct: 601 IVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSP 660
Query: 789 -------EGWYDDQPHSFLVYAPSRTAVVYALADEEEQPL 821
E ++++P+SF V +P RT V Y DE+ + L
Sbjct: 661 EGMPGVPETNFNNRPNSFKVLSPPRTCVAYYRVDEDREEL 700
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 168/613 (27%), Positives = 266/613 (43%), Gaps = 86/613 (14%)
Query: 189 TGITYREWAPGAKSASLIGDFNNWNPNADIM-TQNEFGVWEIFLPNNADGS----PPIPH 243
TG + WAP A+ S++G FN W+ M + E G+WE+F+P +G I
Sbjct: 25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDA 84
Query: 244 GSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSL 303
+++ D + P P ++ EE K Q P +
Sbjct: 85 NGNLRLKSDPYAFEAQMRPETASLICGLPEKVVQT-------EERKKANQFDAP-----I 132
Query: 304 RIYEAHVGMSSTEPIINTYANFR---DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVT 360
IYE H+G N + ++R D ++P K +G+ ++++ + EH + S+GY T
Sbjct: 133 SIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPT 192
Query: 361 NFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSG 420
+AP+ R GT DD + ID AH GL V++D V H + L FDGT+ Y HS
Sbjct: 193 GLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDF-ALAEFDGTN-LYEHSD 250
Query: 421 SR-GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAF 479
R GYH W++ ++NYG EV FL+ NA +W+E + D R D V SM+Y + +
Sbjct: 251 PREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDALRVDAVASMIYRDYSRK--- 307
Query: 480 TGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFD 538
G + FG +++A+ +L N ++ AV++ E+ + P P GG+GF
Sbjct: 308 EGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVTMAEESTDFPGVSRPQDMGGLGFW 367
Query: 539 YRLQMAIADKWIELLK------KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGD 592
Y+ + ++ +K + D I++ T + SHD+ + G
Sbjct: 368 YKWNLGWMHDTLDYMKLDPVYRQYHHDKLTFGILYNYT------ENFVLPLSHDEVVHGK 421
Query: 593 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVT-----MGLGGEAYLNFMGNE 647
K+I LDR G A K L G+ L FMGNE
Sbjct: 422 KSI--------------LDRMP------GDAWQKFANLRAYYGWMWAFPGKKLL-FMGNE 460
Query: 648 FGH-PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHL 706
F EW D L G G+N+ + R DL + Y ++ M E D
Sbjct: 461 FAQGREWNHDASLDWHLLEG----GDNWHHGVQRLVRDL-NLTYRHHKAMHELDF----- 510
Query: 707 EEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKY 762
+ YGF +++ D+ V++F R GN + V + DYR G +PGK+
Sbjct: 511 -DPYGF-----EWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKW 564
Query: 763 KIVLDSDDPLFGG 775
+ +L++D + G
Sbjct: 565 REILNTDSMHYHG 577
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 173/660 (26%), Positives = 284/660 (43%), Gaps = 78/660 (11%)
Query: 131 PGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG 190
P + Y P L HL + GR++++ E L A R + + S G
Sbjct: 88 PHTVADAYRFLPTLGEVDLHL-FAEGRHERLWEV-------LGAHPRSFTTADGVVS--G 137
Query: 191 ITYREWAPGAKSASLIGDFNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 249
+++ WAP AK SLIG+FN WN + A + GVWE+F P+ P K
Sbjct: 138 VSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPD-------FPCDGLYKF 190
Query: 250 HMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKP--KSLRIYE 307
+ G+ F + P + D + + P +++ YE
Sbjct: 191 RVHGADGVVTDRADPFAFGTEVPPQTASRVTSSDYTWGDDDWMAGRALRNPVNEAMSTYE 250
Query: 308 AHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSS 367
H+G S P + +Y ++ I G+ V+++ V EH + S+GY VT+++AP+S
Sbjct: 251 VHLG--SWRPGL-SYRQLARELTDYIVDQGFTHVELLPVAEHPFAGSWGYQVTSYYAPTS 307
Query: 368 RCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWM 427
R GTPDD ++L+D H+ G+ V++D V +H + L FDGT + RG
Sbjct: 308 RFGTPDDFRALVDALHQAGIGVIVDWVPAHFPKDAW-ALGRFDGTPLYEHSDPKRGEQLD 366
Query: 428 WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 487
W + +F++G EV FL++NA +WL+E+ DG R D V SM+Y + G
Sbjct: 367 WGTYVFDFGRPEVRNFLVANALYWLQEFHIDGLRVDAVASMLYLDYSRPEG--GWTPNVH 424
Query: 488 GFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIAD 547
G +++AV +L +N H + P V+I E+ + P GG+GF + M
Sbjct: 425 GGRENLEAVQFLQEMNATAHKVAPGIVTIAEESTPWSGVTRPTNIGGLGFSMKWNMGWMH 484
Query: 548 KWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAE------SHDQALVGDKTIAFWLMD 601
++ + RD ++ H MT A++E SHD+ + G T
Sbjct: 485 DTLDYV-SRDPVYR-SYHHHEMT----FSMLYAFSENYVLPLSHDEVVHGKGT------- 531
Query: 602 KDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH-PEWIDFPRGD 660
++ M P + + L ++ G + L FMG EFG EW +
Sbjct: 532 --LWGRM----PGNNHV-KAAGLRSLLAYQWAHPGKQ--LLFMGQEFGQRAEW-----SE 577
Query: 661 QRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYV 720
QR + + N FS R D+ D Y + + D + + ++
Sbjct: 578 QRGLDWFQLDENGFSNGIQRLVRDINDI-YRCHPALWSLDTTPE-----------GYSWI 625
Query: 721 SRKDEGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGG 775
D + V+ F R L VFNF + + DYR+G + G+++ VL++D ++ G
Sbjct: 626 DANDSANNVLSFMRYGSDGSVLACVFNFA-GAEHRDYRLGLPRAGRWREVLNTDATIYHG 684
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 122/286 (42%), Gaps = 41/286 (14%)
Query: 191 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
+ + WAP KS L M ++E G + I L N + R K
Sbjct: 11 VIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITLNN-------VKVRDRYKYV 59
Query: 251 MDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHV 310
+D S I D + V P +I +E F + K + L IYE HV
Sbjct: 60 LDDASEIPDPASRYQPEGVHGPSQII----------QESKEFNNETFLKKEDLIIYEIHV 109
Query: 311 GMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG 370
G + E L +K LG A++IM + + +GY +A + G
Sbjct: 110 GTFTPEGTFEGVIR----KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYG 165
Query: 371 TPDDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 428
P+ + L+D+AH+ GL V++D+V++H N + L G YF S+ Y W
Sbjct: 166 GPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL-------GPYF---SQKYKTPW 215
Query: 429 DSRLFNYG---SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 471
FN+ S EV +F+L N +W++EY DGFR D V +++ T
Sbjct: 216 -GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDT 260
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 122/286 (42%), Gaps = 41/286 (14%)
Query: 191 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
+ + WAP KS L M ++E G + I L N + R K
Sbjct: 11 VIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITLNN-------VKVRDRYKYV 59
Query: 251 MDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHV 310
+D S I D + V P +I +E F + K + L IYE HV
Sbjct: 60 LDDASEIPDPASRYQPEGVHGPSQII----------QESKEFNNETFLKKEDLIIYEIHV 109
Query: 311 GMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG 370
G + E L +K LG A++IM + + +GY +A + G
Sbjct: 110 GTFTPEGTFEGVIR----KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYG 165
Query: 371 TPDDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 428
P+ + L+D+AH+ GL V++D+V++H N + L G YF S+ Y W
Sbjct: 166 GPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL-------GPYF---SQKYKTPW 215
Query: 429 DSRLFNYG---SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 471
FN+ S EV +F+L N +W++EY DGFR D V +++ T
Sbjct: 216 -GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDT 260
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 122/286 (42%), Gaps = 41/286 (14%)
Query: 191 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
+ + WAP KS L M ++E G + I L N + R K
Sbjct: 11 VIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITLNN-------VKVRDRYKYV 59
Query: 251 MDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHV 310
+D S I D + V P +I +E F + K + L IYE HV
Sbjct: 60 LDDASEIPDPASRYQPEGVHGPSQII----------QESKEFNNETFLKKEDLIIYEIHV 109
Query: 311 GMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG 370
G + E L +K LG A++IM + + +GY +A + G
Sbjct: 110 GTFTPEGTFEGVIR----KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYG 165
Query: 371 TPDDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 428
P+ + L+D+AH+ GL V++D+V++H N + L G YF S+ Y W
Sbjct: 166 GPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL-------GPYF---SQKYKTPW 215
Query: 429 DSRLFNYG---SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 471
FN+ S EV +F+L N +W++EY DGFR D V +++ T
Sbjct: 216 -GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLDAVHAIIDT 260
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 79/169 (46%), Gaps = 22/169 (13%)
Query: 305 IYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA 364
YE HVG + E A + LP +K LG A+Q+M + +GY F+A
Sbjct: 129 FYEVHVGTFTPEGTYRAAA----EKLPYLKELGVTAIQVMPLAAFDGQRGWGYDGAAFYA 184
Query: 365 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGY 424
P + G P+DL +L+D AH LGL V +D+V++H G G+Y S + Y
Sbjct: 185 PYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHF------------GPSGNYLSSYAPSY 232
Query: 425 HW-----MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 468
W L +Y + R++ NAR WL +Y FDG R D M
Sbjct: 233 FTDRFSSAWGMGL-DYAEPHMRRYVTGNARMWLRDYHFDGLRLDATPYM 280
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 122/286 (42%), Gaps = 41/286 (14%)
Query: 191 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
+ + WAP KS L M ++E G + I L N + R K
Sbjct: 11 VIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITLNN-------VKVRDRYKYV 59
Query: 251 MDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHV 310
+D S I D + V P +I +E F + K + L IYE HV
Sbjct: 60 LDDASEIPDPASRYQPEGVHGPSQII----------QESKEFNNETFLKKEDLIIYEIHV 109
Query: 311 GMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG 370
G + E L +K LG A++IM + + +GY +A + G
Sbjct: 110 GTFTPEGTFEGVIR----KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYG 165
Query: 371 TPDDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 428
P+ + L+D+AH+ GL V++D+V++H N + L G YF S+ Y W
Sbjct: 166 GPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL-------GPYF---SQKYKTPW 215
Query: 429 DSRLFNYG---SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 471
FN+ S EV +F+L N +W++EY DGFR + V +++ T
Sbjct: 216 -GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLEAVHAIIDT 260
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 121/286 (42%), Gaps = 41/286 (14%)
Query: 191 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
+ + WAP KS L M ++E G + I L N + R K
Sbjct: 11 VIFTLWAPYQKSVKL----KVLEKGLYEMERDEKGYFTITLNN-------VKVRDRYKYV 59
Query: 251 MDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHV 310
+D S I D + V P +I +E F + K + L IYE HV
Sbjct: 60 LDDASEIPDPASRYQPEGVHGPSQII----------QESKEFNNETFLKKEDLIIYEIHV 109
Query: 311 GMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG 370
G + E L +K LG A++IM + + +GY +A + G
Sbjct: 110 GTFTPEGTFEGVIR----KLDYLKDLGITAIEIMPIAQFPGKRDWGYDGVYLYAVQNSYG 165
Query: 371 TPDDLKSLIDKAHELGLLVLMDIVHSHA--SNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 428
P+ + L+D+AH+ GL V++D+V++H N + L G YF S+ Y W
Sbjct: 166 GPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMVKL-------GPYF---SQKYKTPW 215
Query: 429 DSRLFNYG---SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 471
FN+ S EV +F+L N +W++EY DGFR V +++ T
Sbjct: 216 -GLTFNFDDAESDEVRKFILENVEYWIKEYNVDGFRLSAVHAIIDT 260
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 305 IYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA 364
YE HVG + E A + LP +K LG A+Q+ + +GY F+A
Sbjct: 129 FYEVHVGTFTPEGTYRAAA----EKLPYLKELGVTAIQVXPLAAFDGQRGWGYDGAAFYA 184
Query: 365 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGY 424
P + G P+DL +L+D AH LGL V +D+V++H G G+Y S + Y
Sbjct: 185 PYAPYGRPEDLXALVDAAHRLGLGVFLDVVYNHF------------GPSGNYLSSYAPSY 232
Query: 425 HW-----MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465
W L +Y R++ NAR WL +Y FDG R D
Sbjct: 233 FTDRFSSAWGXGL-DYAEPHXRRYVTGNARXWLRDYHFDGLRLDAT 277
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 75/170 (44%), Gaps = 30/170 (17%)
Query: 305 IYEAHVGMSSTEPIINTYANFRDDV--LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNF 362
+YE H G + E FR + LP + LG +++M V + +GY
Sbjct: 139 VYEMHTGTFTPE------GTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERGWGYDGVLL 192
Query: 363 FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHY------ 416
+AP S GTPDD K+ ID AH GL V++DIV LN F G +G+Y
Sbjct: 193 YAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIV-----------LNHF-GPEGNYLPLLAP 240
Query: 417 -FHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465
F R W Y V R+++ +WL EY DG RFD +
Sbjct: 241 AFFHKERMTPW---GNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAI 287
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 301 KSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFG---- 356
K+L IYEA E + +D L R+K +G N V +M + G
Sbjct: 4 KNLIIYEAFARAYPGEKGKKFLSLEKD--LERLKGMGINTVWLMPIHPTGVEGRKGTLGS 61
Query: 357 -YHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGH 415
Y + +++ GT D K + +AHEL + VLMD+V +HA+ + N+
Sbjct: 62 PYAIRDYYEIDLLIGTKGDFKKFVKRAHELNMYVLMDMVLNHAAVD-----NVLVKKHPE 116
Query: 416 YFHSGSRGY------HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFD 463
+F G W D F+Y + E+ ++++ R+W+EE+ DGFR D
Sbjct: 117 WFLRDENGNPTRKVPDWS-DVVDFDYSNGELREYMINMMRYWVEEFDVDGFRCD 169
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 26/201 (12%)
Query: 297 PKKP-KSLRIYEAHV-GMSSTEP-----IINTYANFRDDVLPR-IKRLGYNAVQIMAV-- 346
P+ P S IYEAHV G++ P I TY V+ +K+LG A++++ V
Sbjct: 144 PRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQ 203
Query: 347 -------QEHSYYASFGYHVTNFFA--PSSRCG---TPDDLKSLIDKAHELGLLVLMDIV 394
Q +GY+ FA P+ C D+ + I H+ G+ V++DIV
Sbjct: 204 FASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIV 263
Query: 395 HSHASNNVLDG----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 450
+H++ LDG L D ++ ++W N V+ + + R+
Sbjct: 264 LNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRY 323
Query: 451 WLEEYKFDGFRFDGVTSMMYT 471
W+E DGFRFD M T
Sbjct: 324 WVETCHVDGFRFDLAAVMGRT 344
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 32/213 (15%)
Query: 301 KSLRIYEAHVG------MSSTEPIINTYANF-RDDVLPRIKRLGYNAVQIMAV------- 346
K IYE HV + E I TY + ++ +K LG V++M V
Sbjct: 172 KDTVIYEVHVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQR 231
Query: 347 --QEHSYYASFGYHVTNFFAPSSR-----C--GTPDDLKSLIDKAHELGLLVLMDIVHSH 397
+ +GY NFF+P R C G K ++++ H G+ V++D+V++H
Sbjct: 232 FLTDKGLTNYWGYDPINFFSPECRYSSTGCLGGQVLSFKKMVNELHNAGIEVIIDVVYNH 291
Query: 398 -ASNNVLDGLNMFDGTDG---HYFHSGSRGYH--WMWDSRLFNYGSWEVLRFLLSNARWW 451
A N L F G D + ++ Y+ + N V++ +L + R+W
Sbjct: 292 TAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYW 351
Query: 452 LEEYKFDGFRFDGVTSM---MYTHHGLQVAFTG 481
+ E DGFRFD ++ +Y+ + L F
Sbjct: 352 VTEMHVDGFRFDLAAALARELYSVNMLNTFFIA 384
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 126/317 (39%), Gaps = 49/317 (15%)
Query: 181 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPP 240
+ G + + ++ WAP A SA++ N + MT+ E GV+ + + +
Sbjct: 105 ELGAVYTADHTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGDL----- 159
Query: 241 IPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKP 300
HG + S +++ + K +V GE G+ P ++ K+ P
Sbjct: 160 --HGYEYLFCICNNSEWMETVDQYAK-AVTVNGE---KGVVLRP-DQMKWTAPLKPFSHP 212
Query: 301 KSLRIYEAHV---------GM-------SSTEPIINTYANFRDDVLPRIKRLGYNAVQIM 344
IYE H+ GM + TE T AN L +K LG V+++
Sbjct: 213 VDAVIYETHLRDFSIHENSGMINKGKYLALTETDTQT-ANGSSSGLAYVKELGVTHVELL 271
Query: 345 AVQEHSYYA--------SFGYHVTNFFAPS-SRCGTPDD-------LKSLIDKAHELGLL 388
V + + ++GY+ +FFAP S P D LK +I+ H+ GL
Sbjct: 272 PVNDFAGVDEEKPLDAYNWGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLR 331
Query: 389 VLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVL--RFLLS 446
V++D+V +H + G++F G + S + +F+
Sbjct: 332 VILDVVFNHVYKR--ENSPFEKTVPGYFFRHDECGKPSNGTGVGNDIASERRMARKFIAD 389
Query: 447 NARWWLEEYKFDGFRFD 463
+WLEEY DGFRFD
Sbjct: 390 CVVYWLEEYNVDGFRFD 406
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 33/164 (20%)
Query: 336 LGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 395
LG + V I + S A GY +++++A GT DD L+ +AH GL V++D+V
Sbjct: 43 LGVDIVWICPIY-RSPNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRRGLKVILDLVI 101
Query: 396 SHAS--------------NNVLDGLNMFDGTDG---HYFHSGSRGYHWMWDSRL------ 432
+H S N D DG DG + + S G W +D R
Sbjct: 102 NHTSDEHPWFIESRSSRDNPKRDWYIWRDGKDGREPNNWESIFGGSAWQYDERTGQYYLH 161
Query: 433 --------FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 468
N+ + EV + L WWL++ DGFR D ++ +
Sbjct: 162 IFDVKQPDLNWENSEVRQALYEMVNWWLDK-GIDGFRIDAISHI 204
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 132/347 (38%), Gaps = 91/347 (26%)
Query: 196 WAPGAKSASLI---GDFNNWNPNADIMTQNEFGVWEIFLPN-----NADGSPPIPHGSRV 247
W+P A S ++I D N + +N GVW+ L N G + R
Sbjct: 151 WSPSADSVTMIIYDKDNQNRVVATTPLVKNNKGVWQTILDTKLGIKNYTGYYYLYEIKRG 210
Query: 248 KIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLR--- 304
K + S+ W +V D + K F +P P++L
Sbjct: 211 KDKVKILDPYAKSLAEWDSNTVN------------DDIKTAKAAFVNPSQLGPQNLSFAK 258
Query: 305 -----------IYEAHV-GMSSTEPI-------INTYANFRDDVLPRIKRLGYNAVQIMA 345
IYEAHV +S + + + T+A F + L +++LG +Q++
Sbjct: 259 IANFKGRQDAVIYEAHVRDFTSDQSLDGKLKNQLGTFAAFSEK-LDYLQKLGVTHIQLLP 317
Query: 346 VQEHSY-----------YAS------FGYHVTNFFA-----------PSSRCGTPDDLKS 377
V + Y Y S +GY ++FA PS+R +LK
Sbjct: 318 VLSYFYVNEMDKSRSTAYTSSDNNYNWGYDPQSYFALSGMYSEKPKDPSARIA---ELKQ 374
Query: 378 LIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFH---SGSRGYHWMWDSRLFN 434
LI H+ G+ V++D+V++H + L F+ + +Y+H RL
Sbjct: 375 LIHDIHKRGMGVILDVVYNHTAKTYL-----FEDIEPNYYHFMNEDGSPRESFGGGRL-- 427
Query: 435 YGSWEVL--RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAF 479
G+ + R L+ + ++ E+K DGFRFD MM H +
Sbjct: 428 -GTTHAMSRRVLVDSIKYLTSEFKVDGFRFD----MMGDHDAAAIEL 469
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 34/221 (15%)
Query: 311 GMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG 370
G+ + II D I LG N + +M + + Y GY VT+++ + G
Sbjct: 22 GIGDLKGIIEKLDYLNDGDPETIADLGVNGIWLMPIFKSPSYH--GYDVTDYYKINPDYG 79
Query: 371 TPDDLKSLIDKAHELGLLVLMDIVHSHAS-------------NNVLDGLNMFDGTD---- 413
T +D L++ AH+ G+ V++D+ +H S N+ ++ G D
Sbjct: 80 TLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTK 139
Query: 414 ------GHYFHSGSRG--YHWMWDSRL-FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 464
G +H G Y + W NY + EV ++ A++WL++ DGFR DG
Sbjct: 140 ETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDG 198
Query: 465 VTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 505
+ + N++ + F +++ V + LV ++
Sbjct: 199 AMHIF-----PPAQYDKNFTWWEKFRQEIEEVKPVYLVGEV 234
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYA-------SFGYHVTNFFAPS-SRCGTPD------DL 375
+ +K LG VQ+ V+E + ++GY N+ P + TP+ +L
Sbjct: 475 IDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYDPRNYNVPEGAYATTPEGTARITEL 534
Query: 376 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNY 435
K LI H+ + V MD+V++H + ++ FD Y++ ++ S N
Sbjct: 535 KQLIQSLHQQRIGVNMDVVYNHTFDVMVSD---FDKIVPQYYYRTDSNGNYTNGSGXGNE 591
Query: 436 GSWE---VLRFLLSNARWWLEEYKFDGFRFD 463
+ E +F+L + +W+ EY DGFRFD
Sbjct: 592 FATEHPMAQKFVLDSVNYWVNEYHVDGFRFD 622
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 46/209 (22%)
Query: 305 IYEAHVGMSSTEPII--------NTYANFRDDVLPRIKRLGYNAVQIMAV---------- 346
IYEAHV +++P I T+ F + L +K LG +Q++ V
Sbjct: 155 IYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYFVNELK 213
Query: 347 --QEHSYYAS------FGYHVTNFFAP----SSRCGTPD----DLKSLIDKAHELGLLVL 390
+ S YAS +GY N+F+ SS P+ + K+LI++ H+ G+ +
Sbjct: 214 NHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI 273
Query: 391 MDIVHSHASNNVLDGLNMFDGTDGHYFH--SGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 448
+D+V++H + +++F+ + +Y+H + R L+ +
Sbjct: 274 LDVVYNHTAK-----VDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSI 328
Query: 449 RWWLEEYKFDGFRFDGVTSMMYTHHGLQV 477
++ ++ YK DGFRFD MM H +
Sbjct: 329 KYLVDTYKVDGFRFD----MMGDHDAASI 353
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 46/209 (22%)
Query: 305 IYEAHVGMSSTEPII--------NTYANFRDDVLPRIKRLGYNAVQIMAV---------- 346
IYEAHV +++P I T+ F + L +K LG +Q++ V
Sbjct: 154 IYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYFVNELK 212
Query: 347 --QEHSYYAS------FGYHVTNFFAP----SSRCGTPD----DLKSLIDKAHELGLLVL 390
+ S YAS +GY N+F+ SS P+ + K+LI++ H+ G+ +
Sbjct: 213 NHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI 272
Query: 391 MDIVHSHASNNVLDGLNMFDGTDGHYFH--SGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 448
+D+V++H + +++F+ + +Y+H + R L+ +
Sbjct: 273 LDVVYNHTAK-----VDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSI 327
Query: 449 RWWLEEYKFDGFRFDGVTSMMYTHHGLQV 477
++ ++ YK DGFRFD MM H +
Sbjct: 328 KYLVDTYKVDGFRFD----MMGDHDAASI 352
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 46/209 (22%)
Query: 305 IYEAHVGMSSTEPII--------NTYANFRDDVLPRIKRLGYNAVQIMAVQEH------- 349
IYEAHV +++P I T+ F + L +K LG +Q++ V +
Sbjct: 461 IYEAHVRDFTSDPAIAKDLTKPFGTFEAFIEK-LDYLKDLGVTHIQLLPVLSYYFVNELK 519
Query: 350 -----SYYAS------FGYHVTNFFAP----SSRCGTPD----DLKSLIDKAHELGLLVL 390
S YAS +GY N+F+ SS P+ + K+LI++ H+ G+ +
Sbjct: 520 NHERLSDYASSNSNYNWGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAI 579
Query: 391 MDIVHSHASNNVLDGLNMFDGTDGHYFH--SGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 448
+D+V++H + +++F+ + +Y+H + R L+ +
Sbjct: 580 LDVVYNHTAK-----VDLFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHHMTKRLLIDSI 634
Query: 449 RWWLEEYKFDGFRFDGVTSMMYTHHGLQV 477
++ ++ YK DGFRFD MM H +
Sbjct: 635 KYLVDTYKVDGFRFD----MMGDHDAASI 659
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 330 LPRIKRLGYNAVQIMAVQ---EHSYYASFG--YHVTNFFAPSSRCGTPDDLKSLIDKAHE 384
L RIK LG + + ++ + E + + G Y + ++ + GT D K+L D+AHE
Sbjct: 36 LQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHE 95
Query: 385 LGLLVLMDIVHSHAS-NNVLDGLN---MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV 440
LG+ V++DIV++H S ++VL + + DG + W D + +YG E+
Sbjct: 96 LGMKVMLDIVYNHTSPDSVLATEHPEWFYHDADGQLTNKVG---DWS-DVKDLDYGHHEL 151
Query: 441 LRFLLSNARWWLEEYKFDGFRFD 463
++ + +W + DG+R D
Sbjct: 152 WQYQIDTLLYWSQ--FVDGYRCD 172
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL 387
D L + +LG NAV + + + + Y ++F + G D LK L+D HE G+
Sbjct: 176 DHLDHLSKLGVNAVYFTPLFKAT--TNHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGI 233
Query: 388 LVLMDIVHSHASNNVLDGLNMF-DGTDGHY---FHSGSRGYHWM-----WDSRLF----- 433
VL+D V +H+ +++ +G Y FH S + +D+ F
Sbjct: 234 RVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLPLEVVDGIPTYDTFAFEPLMP 293
Query: 434 --NYGSWEVLRFLLSNARWWLEEYKFDGFRFD 463
N +V +LL A +W+ E DG+R D
Sbjct: 294 KLNTEHPDVKEYLLKAAEYWIRETGIDGWRLD 325
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 357 YHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGH 415
Y ++F G + LK+LID+ HE G+ V++D V +H +++ +G
Sbjct: 207 YDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSK 266
Query: 416 Y---FH-----------SGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFR 461
Y FH + ++ N + EV R+LL A +W+ E+ DG+R
Sbjct: 267 YKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWR 326
Query: 462 FD 463
D
Sbjct: 327 LD 328
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 357 YHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGH 415
Y ++F G + LK+LID+ HE G+ V++D V +H +++ +G
Sbjct: 207 YDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSK 266
Query: 416 Y---FH-----------SGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFR 461
Y FH + ++ N + EV R+LL A +W+ E+ DG+R
Sbjct: 267 YKDWFHIHEFPLQTEPRPNYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWR 326
Query: 462 FD 463
D
Sbjct: 327 LD 328
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 38/196 (19%)
Query: 305 IYEAHVGMSSTEPIINTYANFRDDV------LPRIKRLGYNAVQIMAVQEHSYYAS---- 354
IYE HV TE + A +R + LG AV+ + VQE A+
Sbjct: 181 IYEVHV-RGFTEQDTSIPAQYRGTYYGAGLKASYLASLGVTAVEFLPVQETQNDANDVVP 239
Query: 355 --------FGYHVTNFFAPSSR------CGTPD-DLKSLIDKAHELGLLVLMDIVHSH-- 397
+GY N+F+P R G P + ++++ H G+ V MD+V++H
Sbjct: 240 NSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTA 299
Query: 398 ------ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLF--NYGSWEVL--RFLLSN 447
+S+ + + G D ++ + G + +D+ N+ ++ + ++ +
Sbjct: 300 EGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVDS 359
Query: 448 ARWWLEEYKFDGFRFD 463
+W DGFRFD
Sbjct: 360 LAYWANTMGVDGFRFD 375
>pdb|2TAA|A Chain A, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|B Chain B, Structure And Possible Catalytic Residues Of Taka-Amylase
A
pdb|2TAA|C Chain C, Structure And Possible Catalytic Residues Of Taka-Amylase
A
Length = 478
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 328 DVLPRIKRLGYNAVQIMAV-----QEHSYYASF-GYHVTNFFAPSSRCGTPDDLKSLIDK 381
D L I+ +G+ A+ I V Q+ +Y ++ GY T+ ++ + GT DDLK+L
Sbjct: 47 DKLDYIQGMGFTAIWITPVTAQLPQDCAYGDAYTGYWQTDIYSLNENYGTADDLKALSSA 106
Query: 382 AHELGLLVLMDIVHSH 397
HE G+ +++D+V +H
Sbjct: 107 LHERGMYLMVDVVANH 122
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 28/177 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D K+LID AH + V++D +H
Sbjct: 84 YSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
Query: 398 AS------------------NNVLDGL-----NMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N+L G N+F G F + G Y ++D
Sbjct: 141 TSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
N+ + V +L + WL + DG R D V +M + +A NY F F
Sbjct: 201 NHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKNMPFGWQKSFMATINNYKPVFTFG 256
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 28/177 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D K+LID AH + V++D +H
Sbjct: 84 YSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
Query: 398 AS------------------NNVLDGL-----NMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N+L G N+F G F + G Y ++D
Sbjct: 141 TSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFG 256
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 28/177 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D K+LID AH + V++D +H
Sbjct: 84 YSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
Query: 398 AS------------------NNVLDGL-----NMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N+L G N+F G F + G Y ++D
Sbjct: 141 TSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFG 256
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 28/177 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D K+LID AH + V++D +H
Sbjct: 84 YSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
Query: 398 AS------------------NNVLDGL-----NMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N+L G N+F G F + G Y ++D
Sbjct: 141 TSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFG 256
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y +WD
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLWDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 32/179 (17%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D K+LID AH + V++D +H
Sbjct: 84 YSVINYSGVNNTAYH---GYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
Query: 398 AS------------------NNVLDGL-----NMF---DGTDGHYFHSGSRGYHWMWDSR 431
S N+L G N+F GTD +G Y ++D
Sbjct: 141 TSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDLSTIENGI--YKNLYDLA 198
Query: 432 LFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 199 DLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFG 256
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 27/128 (21%)
Query: 357 YHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHY 416
Y ++F G + LK+L+ + HE G+ V++D V +H ++
Sbjct: 207 YDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNG---- 262
Query: 417 FHSGSRGYHWM--------------WDSRLF-------NYGSWEVLRFLLSNARWWLEEY 455
+ SR W +D+ F N EV R+LL A +W+ E+
Sbjct: 263 --AASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREF 320
Query: 456 KFDGFRFD 463
DG+R D
Sbjct: 321 DIDGWRLD 328
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 27/128 (21%)
Query: 357 YHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHY 416
Y ++F G + LK+L+ + HE G+ V++D V +H ++
Sbjct: 207 YDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNG---- 262
Query: 417 FHSGSRGYHWM--------------WDSRLF-------NYGSWEVLRFLLSNARWWLEEY 455
+ SR W +D+ F N EV R+LL A +W+ E+
Sbjct: 263 --AASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREF 320
Query: 456 KFDGFRFD 463
DG+R D
Sbjct: 321 DIDGWRLD 328
>pdb|2GUY|A Chain A, Orthorhombic Crystal Structure (Space Group P21212) Of
Aspergillus Niger Alpha-Amylase At 1.6 A Resolution
pdb|2GVY|A Chain A, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|2GVY|B Chain B, Monoclinic Crystal Form Of Aspergillus Niger Alpha-Amylase
In Complex With Maltose At 1.8 A Resolution
pdb|6TAA|A Chain A, Structure And Molecular Model Refinement Of Aspergillus
Oryzae (Taka) Alpha-Amylase: An Application Of The
Simulated-Annealing Method
pdb|7TAA|A Chain A, Family 13 Alpha Amylase In Complex With Acarbose
pdb|3KWX|A Chain A, Chemically Modified Taka Alpha-Amylase
Length = 478
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 328 DVLPRIKRLGYNAVQIMAV-----QEHSYYASF-GYHVTNFFAPSSRCGTPDDLKSLIDK 381
D L I+ +G+ A+ I V Q +Y ++ GY + ++ + GT DDLK+L
Sbjct: 47 DKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSA 106
Query: 382 AHELGLLVLMDIVHSH 397
HE G+ +++D+V +H
Sbjct: 107 LHERGMYLMVDVVANH 122
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L IK LG +A+ I + S GY + N+ GT +D +LI+K H+LG+
Sbjct: 46 LEYIKELGADAIWISPFYD-SPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKF 104
Query: 390 LMDIVHSHASN 400
+ D+V +H S+
Sbjct: 105 ITDLVINHCSS 115
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L IK LG +A+ I + S GY + N+ GT +D +LI+K H+LG+
Sbjct: 46 LEYIKELGADAIWISPFYD-SPQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKLGMKF 104
Query: 390 LMDIVHSHASN 400
+ D+V +H S+
Sbjct: 105 ITDLVINHCSS 115
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 15/139 (10%)
Query: 343 IMAVQEHSYYASFGYHVTNFFAPS-SRCGTPD------DLKSLIDKAHELGLLVLMDIVH 395
++A+QE Y ++GY+ + P S PD + + ++ + +GL V+MD+V+
Sbjct: 343 VVAIQEEDPY-NWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVY 401
Query: 396 SHASNNVLDGLN-MFDG-TDGHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSNARW 450
+H ++ G++ + D G+Y + G + +S N + E V R ++ +
Sbjct: 402 NHLDSSGPCGISSVLDKIVPGYYVRRDTNGQ--IENSAAMNNTASEHFMVDRLIVDDLLN 459
Query: 451 WLEEYKFDGFRFDGVTSMM 469
W YK DGFRFD + +M
Sbjct: 460 WAVNYKVDGFRFDLMGHIM 478
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 28/177 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ G +F + GT D K+LID AH + V++D +H
Sbjct: 84 YSVINYSGVNNTAYH---GLWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNH 140
Query: 398 AS------------------NNVLDGL-----NMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N+L G N+F G F + G Y ++D
Sbjct: 141 TSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQKSFMATINNYKPVFTFG 256
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKGLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLFDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 19/131 (14%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDG---- 411
GY +F + GT D ++LI AH G+ +++D +H S + ++D
Sbjct: 99 GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTLV 158
Query: 412 ------TDGHYFHSGSRG--------YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKF 457
T+G++ H+G Y ++D FN+ + + ++ + WL +
Sbjct: 159 GGYTNDTNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKLWL-DMGV 217
Query: 458 DGFRFDGVTSM 468
DG R D V M
Sbjct: 218 DGIRVDAVKHM 228
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINDSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASPDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F S G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSSYEDGIYRNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEH------SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDK 381
D L I+ +G+ A+ I + E A GY + +S GT D+LKSL D
Sbjct: 47 DHLDYIEGMGFTAIWISPITEQLPQDTADGEAYHGYWQQKIYDVNSNFGTADNLKSLSDA 106
Query: 382 AHELGLLVLMDIVHSH---ASNNVLDGLNMFDGTD-GHYFH 418
H G+ +++D+V H A N ++FD D YFH
Sbjct: 107 LHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFH 147
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNLGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L +++LG +A+ + V + S GY ++++ A + GT D+ LI KA E + +
Sbjct: 38 LDYLEKLGIDAIWLSPVYQ-SPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKI 96
Query: 390 LMDIVHSHASNNVLDGLNMFDGTDGHY 416
+MD+V +H S+ + G D Y
Sbjct: 97 VMDLVVNHTSDQHKWFVEAKKGKDNQY 123
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y + D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLLDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDVVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 25/159 (15%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS---------------- 399
GY +F P+ GT D + L+D AH G+ V++D +H S
Sbjct: 95 GYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLY 154
Query: 400 -NNVLDG-----LNM-FDGTDGHYFHSGSRG-YHWMWDSRLFNYGSWEVLRFLLSNARWW 451
N L G NM F G F S G Y ++D N+ + + R+L + W
Sbjct: 155 DNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW 214
Query: 452 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA 490
+ + DG R D V M + + NY F F
Sbjct: 215 I-DMGIDGIRMDAVKHMPFGWQKSLMDEIDNYRPVFTFG 252
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y + D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLGDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V+++ +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIINFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R + V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMNAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 39/195 (20%)
Query: 298 KKPKSLRIYEAHVGMSSTEPIINTYAN-----FRDDVLPRIKRLGYNAVQIMAVQEHSYY 352
K+P+ + EA + P + Y +D L I+ LG NA+ + + +
Sbjct: 26 KQPRKRLLQEARWEDWDSMPTLQGYKGGDLWGIMED-LDYIQNLGINAIYFTPIFQSA-- 82
Query: 353 ASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS------NNVLDG- 405
++ YH +++ G + K L+D AH+ + V++D V +H+S ++VL+
Sbjct: 83 SNHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENG 142
Query: 406 ---------------LNMFDGTDGHYFHSGSRGYHWMWDSRL--FNYGSWEVLRFLLSNA 448
L+ ++G F + G W + L FN+ + EV +++ A
Sbjct: 143 PHSPWVNWFKIEGWPLSPYNGE----FPANYVG--WAGNRALPEFNHDNPEVREYIMEIA 196
Query: 449 RWWLEEYKFDGFRFD 463
+WL ++ DG+R D
Sbjct: 197 EYWL-KFGIDGWRLD 210
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 37/161 (22%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW-------DSRLFNYGS 437
G+ +++D V +HA + ++ + SR W + + NY +
Sbjct: 232 RGIKIILDAVFNHAGDQFFAFRDVLQKGE------QSRYKDWFFIEDFPVSKTSRTNYET 285
Query: 438 W---------------EVLRFLLSNARWWLEEYKFDGFRFD 463
+ EV +L AR+W+E+ DG+R D
Sbjct: 286 YAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGWRLD 325
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L + +LG A+ + + H + GY VT++ + + GT D L+ +AH G+ +
Sbjct: 66 LDYLNQLGVKALWLSPI--HPCXSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKI 123
Query: 390 LMDIVHSHA 398
+D V +H
Sbjct: 124 YLDYVXNHT 132
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 37/161 (22%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW-------DSRLFNYGS 437
G+ +++D V +HA + ++ + SR W + + NY +
Sbjct: 232 RGIKIILDAVFNHAGDQFFAFRDVLQKGE------QSRYKDWFFIEDFPVSKTSRTNYET 285
Query: 438 W---------------EVLRFLLSNARWWLEEYKFDGFRFD 463
+ EV +L AR+W+E+ DG+R D
Sbjct: 286 FAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGWRLD 325
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 37/161 (22%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW-------DSRLFNYGS 437
G+ +++D V +HA + ++ + SR W + + NY +
Sbjct: 232 RGIKIILDAVFNHAGDQFFAFRDVLQKGE------QSRYKDWFFIEDFPVSKTSRTNYET 285
Query: 438 W---------------EVLRFLLSNARWWLEEYKFDGFRFD 463
+ EV +L AR+W+E+ DG+R D
Sbjct: 286 FAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGWRLD 325
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 37/161 (22%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW-------DSRLFNYGS 437
G+ +++D V +HA + ++ + SR W + + NY +
Sbjct: 232 RGIKIILDAVFNHAGDQFFAFRDVLQKGE------QSRYKDWFFIEDFPVSKTSRTNYET 285
Query: 438 W---------------EVLRFLLSNARWWLEEYKFDGFRFD 463
+ EV +L AR+W+E+ DG+R D
Sbjct: 286 FAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGWRLD 325
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 37/161 (22%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW-------DSRLFNYGS 437
G+ +++D V +HA + ++ + SR W + + NY +
Sbjct: 232 RGIKIILDAVFNHAGDQFFAFRDVLQKGE------QSRYKDWFFIEDFPVSKTSRTNYET 285
Query: 438 W---------------EVLRFLLSNARWWLEEYKFDGFRFD 463
+ EV +L AR+W+E+ DG+R D
Sbjct: 286 FAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGWRLD 325
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 37/161 (22%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW-------DSRLFNYGS 437
G+ +++D V +HA + ++ + SR W + + NY +
Sbjct: 232 RGIKIILDAVFNHAGDQFFAFRDVLQKGE------QSRYKDWFFIEDFPVSKTSRTNYET 285
Query: 438 W---------------EVLRFLLSNARWWLEEYKFDGFRFD 463
+ EV +L AR+W+E+ DG+R D
Sbjct: 286 FAVQVPAMPKLRTENPEVKEYLFDVARFWMEQ-GIDGWRLD 325
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++ +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIAFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R D V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 338 YNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397
Y+ + V +Y+ GY +F + GT D ++LI AH + V++D +H
Sbjct: 84 YSIINYSGVNNTAYH---GYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNH 140
Query: 398 AS-----------------NNVL------DGLNMFDGTDGHYFHSGSRG-YHWMWDSRLF 433
S N L D N+F G F + G Y ++D
Sbjct: 141 TSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADL 200
Query: 434 NYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489
N+ + V +L + WL + DG R V M + +A NY F F
Sbjct: 201 NHNNSTVDVYLKDAIKMWL-DLGIDGIRMAAVKHMPFGWQKSFMAAVNNYKPVFTF 255
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS---------------- 399
GY +F + GT D ++LI AH G+ +++D +H S
Sbjct: 99 GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
Query: 400 -NNVLDGLNMFDGTDGHYFHSGSRG--------YHWMWDSRLFNYGSWEVLRFLLSNARW 450
N L G D T+G++ H+G Y ++D FN+ + + ++ +
Sbjct: 159 DNGTLVGGYTND-TNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKL 217
Query: 451 WLEEYKFDGFRFDGVTSM 468
WL + DG R D V M
Sbjct: 218 WL-DMGVDGIRVDAVKHM 234
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L + +LG A+ + + H + GY VT++ + + GT D L+ +AH G+ +
Sbjct: 66 LDYLNQLGVKALWLSPI--HPCMSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKI 123
Query: 390 LMDIVHSHA 398
+D V +H
Sbjct: 124 YLDYVMNHT 132
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS---------------- 399
GY +F + GT D ++LI AH G+ +++D +H S
Sbjct: 99 GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
Query: 400 -NNVLDGLNMFDGTDGHYFHSGSRG--------YHWMWDSRLFNYGSWEVLRFLLSNARW 450
N L G D T+G++ H+G Y ++D FN+ + + ++ +
Sbjct: 159 DNGTLVGGYTND-TNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKL 217
Query: 451 WLEEYKFDGFRFDGVTSM 468
WL + DG R D V M
Sbjct: 218 WL-DMGVDGIRVDAVKHM 234
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L +K LG + + + V E S GY ++++ + GT +D L+ + HE + +
Sbjct: 37 LDYLKELGIDVIWLSPVYE-SPNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHERNMKL 95
Query: 390 LMDIVHSHASN 400
+MD+V +H S+
Sbjct: 96 MMDLVVNHTSD 106
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 117 DKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 177 ISAVVDFIFNHTSN 190
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 117 DKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 177 ISAVVDFIFNHTSN 190
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 121 DKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 180
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 181 ISAVVDFIFNHTSN 194
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 117 DKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 177 ISAVVDFIFNHTSN 190
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 117 DKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 177 ISAVVDFIFNHTSN 190
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 117 DKIPYFQELGLTYLHLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 177 ISAVVDFIFNHTSN 190
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNN 401
G+ +++D V +HA +
Sbjct: 232 RGIKIILDAVFNHAGDQ 248
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNN 401
G+ +++D V +HA +
Sbjct: 232 RGIKIILDAVFNHAGDQ 248
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYH---VTNFFAPSSRCGTPDDLKSLIDKAHE 384
D LP ++ LG A+ + +AS +H ++ A + G + L+D+AH
Sbjct: 177 DRLPYLEELGVTALYFTPI-----FASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHR 231
Query: 385 LGLLVLMDIVHSHASNN 401
G+ +++D V +HA +
Sbjct: 232 RGIKIILDAVFNHAGDQ 248
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS---------------- 399
GY +F + GT D ++LI AH G+ +++D +H S
Sbjct: 99 GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
Query: 400 -NNVLDGLNMFDGTDGHYFHSGSRG--------YHWMWDSRLFNYGSWEVLRFLLSNARW 450
N L G D T+G++ H+G Y +D FN+ + + ++ +
Sbjct: 159 DNGTLVGGYTND-TNGYFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDAIKL 217
Query: 451 WLEEYKFDGFRFDGVTSM 468
WL + DG R D V M
Sbjct: 218 WL-DMGVDGIRVDAVKHM 234
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 117 DKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 177 ISAVVDFIFNHTSN 190
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEHSYYAS-FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386
D +P + LG + +M + + S GY V+++ + GT DL+ +I HE G
Sbjct: 117 DKIPYFQELGLTYLYLMPLFKCPEGKSDGGYAVSSYRDVNPALGTIGDLREVIAALHEAG 176
Query: 387 LLVLMDIVHSHASN 400
+ ++D + +H SN
Sbjct: 177 ISAVVDFIFNHTSN 190
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 47/268 (17%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L +K LG +A+ I + S GY ++N+ GT +D SL+ + + + +
Sbjct: 51 LDYLKSLGIDAIWINPHYD-SPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRL 109
Query: 390 LMDIVHSHAS--------------NNVLDGLNMFDGTDG---HYFHSGSRGYHWMWDSRL 432
++D+V +H S N D DG D + + S G W D++
Sbjct: 110 MIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKS 169
Query: 433 --------------FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT--SMMYTHHGLQ 476
N+ + +V L + R+WL++ G RFD V S + L
Sbjct: 170 GQYYLHYFARQQPDLNWDNPKVREDLYAMLRFWLDK-GVSGMRFDTVATYSKIPGFPNLT 228
Query: 477 VAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVG 536
N++E + ++ Y+ +N + Y + + GE F +P+
Sbjct: 229 PEQQKNFAEQYTMGPNIHR--YIQEMNRKVLSRY-DVATAGE------IFGVPLDRSSQF 279
Query: 537 FDYR---LQMAIADKWIELLKKRDEDWK 561
FD R L MA I L + +E W+
Sbjct: 280 FDRRRHELNMAFMFDLIRLDRDSNERWR 307
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L +++LG A+ + V + S GY + N+ A + G D+ +L+ +A G+ +
Sbjct: 37 LDYLQKLGVMAIWLSPVYD-SPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKI 95
Query: 390 LMDIVHSHASN 400
+MD+V +H S+
Sbjct: 96 IMDLVVNHTSD 106
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
L +++LG A+ + V + S GY + N+ A + G D+ +L+ +A G+ +
Sbjct: 37 LDYLQKLGVMAIWLSPVYD-SPMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMRGIKI 95
Query: 390 LMDIVHSHASN 400
+MD+V +H S+
Sbjct: 96 IMDLVVNHTSD 106
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389
LP + LG A+ + V + A+ YH ++F G + L+ L++ AH G+ V
Sbjct: 56 LPYLLDLGVEAIYLNPVFAST--ANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRV 113
Query: 390 LMDIVHSHASNN 401
++D V +H
Sbjct: 114 ILDGVFNHTGRG 125
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS---------------- 399
GY +F + GT D ++LI AH G+ +++D +H S
Sbjct: 99 GYWARDFKKTNPYFGTMADFQNLITTAHAKGIKIVIDFAPNHTSPAMETDTSFAENGRLY 158
Query: 400 -NNVLDGLNMFDGTDGHYFHSGSRG--------YHWMWDSRLFNYGSWEVLRFLLSNARW 450
N L G D T+G++ H+G Y ++D FN+ + + ++ +
Sbjct: 159 DNGTLVGGYTND-TNGYFHHNGGSDFSSLENGIYKNLYDLADFNHNNATIDKYFKDAIKL 217
Query: 451 WLEEYKFDGFRFDGVTSM 468
WL + DG R V M
Sbjct: 218 WL-DMGVDGIRVAAVKHM 234
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 319 INTYANFRD--DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK 376
+N NF D D L LG + + + V S ++ GY V + + G + +
Sbjct: 10 LNKNFNFGDVIDNLWYFXDLGVSHLYLSPVLMASPGSNHGYDVIDHSRINDELGGEKEYR 69
Query: 377 SLIDKAHELGLLVLMDIVHSHASNNVLD 404
LI+ AH +GL ++ DIV +H + N L+
Sbjct: 70 RLIETAHTIGLGIIQDIVPNHMAVNSLN 97
>pdb|1PD2|1 Chain 1, Crystal Structure Of Hematopoietic Prostaglandin D
Synthase Complex With Glutathione
pdb|1PD2|2 Chain 2, Crystal Structure Of Hematopoietic Prostaglandin D
Synthase Complex With Glutathione
Length = 199
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 471 THHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMP 524
T+ G + F GNY + F D+ + L+L D++ G+YP VS+ V +P
Sbjct: 133 TYLGDKEWFIGNYVTWADFYWDICSTTLLVLKPDLL-GIYPRLVSLRNKVQAIP 185
>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp
Length = 195
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 214 PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
PN D Q + VW +PN GSPP P VKI
Sbjct: 93 PNEDGSLQKKLKVW-FRIPNQFQGSPPAPSDESVKIE 128
>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp
Length = 195
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 214 PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
PN D Q + VW +PN GSPP P VKI
Sbjct: 93 PNEDGSLQKKLKVW-FRIPNQFQGSPPAPSDESVKIE 128
>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp
Length = 192
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 214 PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIH 250
PN D Q + VW +PN GSPP P VKI
Sbjct: 90 PNEDGSLQKKLKVW-FRIPNQFQGSPPAPSDESVKIE 125
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
D L I LG+ + + E+ + Y+ GY T+ + R G+ +D L +A +
Sbjct: 152 DHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKR 211
Query: 386 GLLVLMDIVHSHASNN--------VLDGLN---MFDGTDGHYFHSGSRGYHWMWDSRLFN 434
G+ ++ D+V SH + D +N F T H+ + Y DS F
Sbjct: 212 GMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQ-HHRVAVQDPYAAQADSENFT 270
Query: 435 YGSWE------------VLRFLLSNARWWLEEYKFDGFRFD 463
G + V +L+ N WW+E G R D
Sbjct: 271 KGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
D L I LG+ + + E+ + Y+ GY T+ + R G+ +D L +A +
Sbjct: 152 DHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKR 211
Query: 386 GLLVLMDIVHSHASNN--------VLDGLN---MFDGTDGHYFHSGSRGYHWMWDSRLFN 434
G+ ++ D+V SH + D +N F T H+ + Y DS F
Sbjct: 212 GMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQ-HHRVAVQDPYAAQADSENFT 270
Query: 435 YGSWE------------VLRFLLSNARWWLEEYKFDGFRFD 463
G + V +L+ N WW+E G R D
Sbjct: 271 KGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
D L I LG+ + + E+ + Y+ GY T+ + R G+ +D L +A +
Sbjct: 152 DHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKR 211
Query: 386 GLLVLMDIVHSHASNN--------VLDGLN---MFDGTDGHYFHSGSRGYHWMWDSRLFN 434
G+ ++ D+V SH + D +N F T H+ + Y DS F
Sbjct: 212 GMGLIQDVVLSHIGKHHWWMKDLPTPDWINYGGKFVPTQ-HHRVAVQDPYAAQADSENFT 270
Query: 435 YGSWE------------VLRFLLSNARWWLEEYKFDGFRFD 463
G + V +L+ N WW+E G R D
Sbjct: 271 KGWFVEGMPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYAS----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
L +K LG +A+ I + +YAS GY ++++ GT +D L+ + +
Sbjct: 37 LDYLKGLGIDAIWI-----NPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 91
Query: 386 GLLVLMDIVHSHAS--------------NNVLDGLNMFDGTDGH------YFHSGSR--- 422
G+ +++D+V +H+S N D DG DGH F GS
Sbjct: 92 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEK 151
Query: 423 -----GYHWMWDSRL---FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT--H 472
Y+ + R N+ + ++ L + R+WL++ G RFD V + T
Sbjct: 152 DPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDK-GVSGMRFDTVATYSKTPGF 210
Query: 473 HGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPV 530
L N++E + ++ YL +++ + Y +AV+ GE + G P +P+
Sbjct: 211 PDLTPEQMKNFAEAYTQGPNLHR--YLQEMHEKVFDHY-DAVTAGE-IFGAPLNQVPL 264
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYAS----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
L +K LG +A+ I + +YAS GY ++++ GT +D L+ + +
Sbjct: 38 LDYLKGLGIDAIWI-----NPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 92
Query: 386 GLLVLMDIVHSHAS--------------NNVLDGLNMFDGTDGH------YFHSGSR--- 422
G+ +++D+V +H+S N D DG DGH F GS
Sbjct: 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEK 152
Query: 423 -----GYHWMWDSRL---FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT--H 472
Y+ + R N+ + ++ L + R+WL++ G RFD V + T
Sbjct: 153 DPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDK-GVSGMRFDTVATYSKTPGF 211
Query: 473 HGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPV 530
L N++E + ++ YL +++ + Y +AV+ GE + G P +P+
Sbjct: 212 PDLTPEQMKNFAEAYTQGPNLHR--YLQEMHEKVFDHY-DAVTAGE-IFGAPLNQVPL 265
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYAS----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
L +K LG +A+ I + +YAS GY ++++ GT +D L+ + +
Sbjct: 38 LDYLKGLGIDAIWI-----NPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 92
Query: 386 GLLVLMDIVHSHAS--------------NNVLDGLNMFDGTDGH------YFHSGSR--- 422
G+ +++D+V +H+S N D DG DGH F GS
Sbjct: 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEK 152
Query: 423 -----GYHWMWDSRL---FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT--H 472
Y+ + R N+ + ++ L + R+WL++ G RFD V + T
Sbjct: 153 DPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDK-GVSGMRFDTVATYSKTPGF 211
Query: 473 HGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPV 530
L N++E + ++ YL +++ + Y +AV+ GE + G P +P+
Sbjct: 212 PDLTPEQMKNFAEAYTQGPNLHR--YLQEMHEKVFDHY-DAVTAGE-IFGAPLNQVPL 265
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYAS----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
L +K LG +A+ I + +YAS GY ++++ GT +D L+ + +
Sbjct: 38 LDYLKGLGIDAIWI-----NPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 92
Query: 386 GLLVLMDIVHSHAS--------------NNVLDGLNMFDGTDGH------YFHSGSR--- 422
G+ +++D+V +H+S N D DG DGH F GS
Sbjct: 93 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEK 152
Query: 423 -----GYHWMWDSRL---FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT--H 472
Y+ + R N+ + ++ L + R+WL++ G RFD V + T
Sbjct: 153 DPVTGQYYLHYLGRQQPDLNWDTPKLREELYAMLRFWLDK-GVSGMRFDTVATYSKTPGF 211
Query: 473 HGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPV 530
L N++E + ++ YL +++ + Y +AV+ GE + G P +P+
Sbjct: 212 PDLTPEQMKNFAEAYTQGPNLHR--YLQEMHEKVFDHY-DAVTAGE-IFGAPLNQVPL 265
>pdb|3M8L|A Chain A, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
pdb|3M8L|C Chain C, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 534
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 432 LFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFAT 491
L + S+ V R + SN W+ DGF F GV+S+ L ++ GN A+
Sbjct: 472 LLSPDSFAVYRIIDSNGSWFDIGIDSDGFSFVGVSSIGKLEFPLTASYMGNQLAKIRLAS 531
Query: 492 DV 493
++
Sbjct: 532 NI 533
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 367 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLD 404
+R G+ +L ++I+ AH G+ V+ DIV +H + L+
Sbjct: 81 TRFGSKQELVNMINTAHAYGMKVIADIVINHRAGGDLE 118
>pdb|3M8L|B Chain B, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 530
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 432 LFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFAT 491
L + S+ V R + SN W+ DGF F GV+S+ L ++ GN A+
Sbjct: 468 LLSPDSFAVYRIIDSNGSWFDIGIDSDGFSFVGVSSIGKLEFPLTASYMGNQLAKIRLAS 527
Query: 492 DV 493
++
Sbjct: 528 NI 529
>pdb|2YGL|A Chain A, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71
pdb|2YGL|B Chain B, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71
pdb|2YGM|A Chain A, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71, In Complex With The
Blood Group B Antigen
pdb|2YGM|B Chain B, The X-Ray Crystal Structure Of Tandem Cbm51 Modules Of
Sp3gh98, The Family 98 Glycoside Hydrolase From
Streptococcus Pneumoniae Sp3-Bs71, In Complex With The
Blood Group B Antigen
Length = 354
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 35/110 (31%)
Query: 630 LVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQR-----LPNGQFVPGNNFSYDKCRR--- 681
L+ G+ G YL+ + EW+D GD + F PGNN S +K +
Sbjct: 181 LLNKGINGGVYLSDL-------EWVDATHGDDDKSKTVQKDKPFTPGNNGSNNKIKLLID 233
Query: 682 --------------------RFDLGDADYLRYRGMQEFDRAMQHLEEKYG 711
++D+ A+ R+ DR+ HL Y
Sbjct: 234 GKEVEFNKGLGTVASNPSSIKYDVSGANVTRFISYVGIDRSANHLNSDYA 283
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYAS----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
L +K LG +A+ I + +YAS GY ++++ GT +D L+ + +
Sbjct: 65 LDYLKGLGIDAIWI-----NPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 119
Query: 386 GLLVLMDIVHSHAS--------------NNVLDGLNMFDGTDGH------YFHSGSR--- 422
G+ +++D+V +H+S N D DG DGH F GS
Sbjct: 120 GMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNNYPSFFGGSAWEK 179
Query: 423 -----GYHWMWDSRL---FNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT--H 472
Y+ + R N+ + ++ L + R+WL++ G RFD V + T
Sbjct: 180 DPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFWLDK-GVSGMRFDTVATYSKTPGF 238
Query: 473 HGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPV 530
L N++E + ++ YL +++ + Y +AV+ GE + G P +P+
Sbjct: 239 PDLTPEQMKNFAEAYTQGPNLHR--YLQEMHEKVFDHY-DAVTAGE-IFGAPLNQVPL 292
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 19/112 (16%)
Query: 330 LPRIKRLGYNAVQI---------MAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLID 380
LP +K+LG + + +A +++ Y GY +F G +L++
Sbjct: 58 LPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGY--HGYWTRDFKQIEEHFGNWTTFDTLVN 115
Query: 381 KAHELGLLVLMDIVHSHAS------NNVLDGLNMFDGTD--GHYFHSGSRGY 424
AH+ G+ V++D V +H++ + +G +++ G+YF ++GY
Sbjct: 116 DAHQNGIKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGY 167
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYAS----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
L +K LG +A+ I + +YAS GY ++++ GT +D L+ + +
Sbjct: 37 LDYLKGLGIDAIWI-----NPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 91
Query: 386 GLLVLMDIVHSHASN 400
G+ +++D+V +H+S+
Sbjct: 92 GMRLMVDVVINHSSD 106
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 330 LPRIKRLGYNAVQIMAVQEHSYYAS----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
L +K LG +A+ I + +YAS GY ++++ GT +D L+ + +
Sbjct: 37 LDYLKGLGIDAIWI-----NPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR 91
Query: 386 GLLVLMDIVHSHASN 400
G+ +++D+V +H+S+
Sbjct: 92 GMRLMVDVVINHSSD 106
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 26/161 (16%)
Query: 328 DVLPRIKRLGYNAVQIMAVQEH--SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHEL 385
D L I LG+ + + E+ + Y+ GY T+ + R G+ +D L +A +
Sbjct: 152 DHLDYIAGLGFTQLWPTPLVENDAAAYSYHGYAATDHYRIDPRYGSNEDFVRLSTEARKR 211
Query: 386 GLLVLMDIVHSHASNN--------VLDGLN---MFDGTDGHYFHSGSRGYHWMWDSRLFN 434
G ++ D+V SH + D +N F T H+ + Y DS F
Sbjct: 212 GXGLIQDVVLSHIGKHHWWXKDLPTPDWINYGGKFVPTQ-HHRVAVQDPYAAQADSENFT 270
Query: 435 YGSWE------------VLRFLLSNARWWLEEYKFDGFRFD 463
G + V +L+ N WW+E G R D
Sbjct: 271 KGWFVEGXPDLNQTNPLVANYLIQNNIWWIEYAGLSGLRID 311
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 367 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLD 404
+R G+ ++L LI AH G+ V+ D+V +H + L+
Sbjct: 81 TRFGSKEELVRLIQTAHAYGIKVIADVVINHRAGGDLE 118
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 25/137 (18%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS------------NNVL 403
GY +F + G+ D ++LI+ AH + V++D +H S +
Sbjct: 100 GYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLY 159
Query: 404 DGLNMFDG----TDGHYFHSGSRG--------YHWMWDSRLFNYGSWEVLRFLLSNARWW 451
D + G T+G++ H G Y ++D N + + +L S + W
Sbjct: 160 DNGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW 219
Query: 452 LEEYKFDGFRFDGVTSM 468
L + DG R D V M
Sbjct: 220 L-DMGIDGIRLDAVKHM 235
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 25/137 (18%)
Query: 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS------------NNVL 403
GY +F + G+ D ++LI+ AH + V++D +H S +
Sbjct: 100 GYWARDFKRTNPYFGSFTDFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLY 159
Query: 404 DGLNMFDG----TDGHYFHSGSRG--------YHWMWDSRLFNYGSWEVLRFLLSNARWW 451
D + G T+G++ H G Y ++D N + + +L S + W
Sbjct: 160 DNGTLLGGYTNDTNGYFHHYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW 219
Query: 452 LEEYKFDGFRFDGVTSM 468
L + DG R D V M
Sbjct: 220 L-DMGIDGIRLDAVKHM 235
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 192 TYREWAPGAKSASLIGDFNNWNPNADIMTQNEF 224
T W G K L G FNNW+ +QN F
Sbjct: 13 TVFRWTGGGKEVYLSGSFNNWSKLPXTRSQNNF 45
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 353 ASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 399
++ GY V ++ + G ++ LID+A GL ++ DIV +H +
Sbjct: 44 STHGYDVVDYNTINDELGGEEEYIRLIDEAKSKGLGIIQDIVPNHMA 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,856,461
Number of Sequences: 62578
Number of extensions: 1369632
Number of successful extensions: 3322
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3157
Number of HSP's gapped (non-prelim): 142
length of query: 823
length of database: 14,973,337
effective HSP length: 107
effective length of query: 716
effective length of database: 8,277,491
effective search space: 5926683556
effective search space used: 5926683556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)