Query 003390
Match_columns 823
No_of_seqs 453 out of 3350
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02447 1,4-alpha-glucan-bran 100.0 2E-148 5E-153 1296.1 68.6 733 50-821 2-738 (758)
2 PLN03244 alpha-amylase; Provis 100.0 3E-122 6E-127 1051.5 56.1 623 144-815 85-868 (872)
3 PLN02960 alpha-amylase 100.0 3E-118 5E-123 1039.5 60.5 673 123-815 54-893 (897)
4 KOG0470 1,4-alpha-glucan branc 100.0 4E-119 1E-123 1010.9 47.3 690 115-816 39-755 (757)
5 PRK12568 glycogen branching en 100.0 3E-102 6E-107 907.5 53.9 582 171-814 116-729 (730)
6 PRK14706 glycogen branching en 100.0 5E-101 1E-105 900.8 56.2 575 174-814 19-622 (639)
7 PRK14705 glycogen branching en 100.0 1E-100 3E-105 931.2 54.1 582 168-814 609-1223(1224)
8 PRK12313 glycogen branching en 100.0 5.4E-94 1.2E-98 851.4 57.8 582 174-816 19-630 (633)
9 PRK05402 glycogen branching en 100.0 5.9E-94 1.3E-98 860.4 57.6 610 133-815 84-725 (726)
10 TIGR01515 branching_enzym alph 100.0 2.6E-93 5.7E-98 840.2 54.5 578 174-812 9-613 (613)
11 COG0296 GlgB 1,4-alpha-glucan 100.0 9.7E-92 2.1E-96 801.0 42.3 581 173-813 17-628 (628)
12 TIGR02104 pulA_typeI pullulana 100.0 5.5E-75 1.2E-79 685.2 44.7 508 181-770 11-600 (605)
13 TIGR02402 trehalose_TreZ malto 100.0 9.5E-72 2.1E-76 647.3 43.3 479 191-745 1-536 (542)
14 TIGR02100 glgX_debranch glycog 100.0 1.3E-70 2.7E-75 649.8 51.5 554 180-812 5-687 (688)
15 TIGR02102 pullulan_Gpos pullul 100.0 3.9E-70 8.4E-75 661.4 52.7 585 159-814 306-1005(1111)
16 PRK03705 glycogen debranching 100.0 3.8E-69 8.3E-74 632.6 47.5 548 179-813 9-657 (658)
17 TIGR02103 pullul_strch alpha-1 100.0 1.1E-66 2.4E-71 620.8 45.9 553 161-813 114-896 (898)
18 PLN02877 alpha-amylase/limit d 100.0 3.3E-64 7.1E-69 597.2 47.6 486 181-745 214-915 (970)
19 PRK14510 putative bifunctional 100.0 9.2E-62 2E-66 602.7 43.2 477 180-717 14-576 (1221)
20 PRK10785 maltodextrin glucosid 100.0 1.6E-57 3.6E-62 535.0 41.8 462 187-744 17-559 (598)
21 TIGR02456 treS_nterm trehalose 100.0 4.3E-57 9.4E-62 527.3 36.4 445 301-813 4-538 (539)
22 PRK10933 trehalose-6-phosphate 100.0 1.1E-55 2.4E-60 513.9 38.7 451 299-813 7-550 (551)
23 COG1523 PulA Type II secretory 100.0 5.4E-55 1.2E-59 507.2 39.7 552 179-814 17-692 (697)
24 TIGR02403 trehalose_treC alpha 100.0 1.7E-55 3.8E-60 513.0 34.9 450 301-812 3-542 (543)
25 PRK09505 malS alpha-amylase; R 100.0 1.1E-51 2.5E-56 484.5 33.5 364 299-743 186-681 (683)
26 PRK09441 cytoplasmic alpha-amy 100.0 3.1E-50 6.8E-55 464.0 33.8 375 320-811 19-478 (479)
27 PF00128 Alpha-amylase: Alpha 100.0 3.9E-45 8.5E-50 397.3 17.6 276 320-652 1-312 (316)
28 PLN00196 alpha-amylase; Provis 100.0 5.5E-43 1.2E-47 393.8 30.3 316 319-744 40-402 (428)
29 PLN02361 alpha-amylase 100.0 3E-41 6.5E-46 375.4 32.7 315 321-742 27-376 (401)
30 PRK13840 sucrose phosphorylase 100.0 9.9E-39 2.1E-43 360.8 27.6 375 319-744 16-467 (495)
31 TIGR03852 sucrose_gtfA sucrose 100.0 3.5E-39 7.6E-44 362.4 22.8 373 317-745 14-462 (470)
32 COG0366 AmyA Glycosidases [Car 100.0 4E-38 8.7E-43 366.5 27.2 400 303-745 1-485 (505)
33 TIGR02455 TreS_stutzeri trehal 100.0 7.7E-37 1.7E-41 345.6 35.1 468 301-816 50-684 (688)
34 PLN02784 alpha-amylase 100.0 6.3E-37 1.4E-41 356.6 28.9 329 302-741 498-865 (894)
35 KOG0471 Alpha-amylase [Carbohy 100.0 2.2E-34 4.7E-39 334.1 27.7 166 301-469 16-219 (545)
36 TIGR02401 trehalose_TreY malto 100.0 2.9E-31 6.2E-36 312.9 28.9 175 320-522 13-287 (825)
37 PRK14511 maltooligosyl trehalo 99.9 2E-25 4.3E-30 264.6 29.2 82 320-402 17-98 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 5.1E-22 1.1E-26 206.6 22.8 380 321-770 38-465 (504)
39 smart00642 Aamy Alpha-amylase 99.9 2.5E-22 5.5E-27 199.2 10.1 93 307-400 1-97 (166)
40 cd02854 Glycogen_branching_enz 99.8 2.2E-20 4.8E-25 168.8 10.4 96 187-282 3-99 (99)
41 PF14872 GHL5: Hypothetical gl 99.8 9.8E-19 2.1E-23 195.1 24.5 306 180-524 26-438 (811)
42 PRK14507 putative bifunctional 99.7 1.3E-16 2.9E-21 200.4 9.9 91 303-400 744-834 (1693)
43 TIGR01531 glyc_debranch glycog 99.6 7.3E-14 1.6E-18 170.9 28.7 82 319-402 128-214 (1464)
44 COG3280 TreY Maltooligosyl tre 99.6 2.8E-14 6.1E-19 162.5 13.7 80 321-401 17-96 (889)
45 PF02922 CBM_48: Carbohydrate- 99.5 2.1E-14 4.5E-19 126.6 6.1 79 181-265 1-85 (85)
46 cd02860 Pullulanase_N_term Pul 99.5 9.5E-14 2.1E-18 126.4 9.0 92 182-285 1-97 (100)
47 cd02855 Glycogen_branching_enz 99.4 9.4E-13 2E-17 120.9 10.5 92 175-273 3-100 (106)
48 cd02856 Glycogen_debranching_e 99.4 2.4E-12 5.1E-17 117.9 8.9 81 181-269 1-91 (103)
49 PF02806 Alpha-amylase_C: Alph 99.3 3.1E-12 6.7E-17 115.2 7.3 89 719-814 1-94 (95)
50 cd02853 MTHase_N_term Maltooli 99.3 2.1E-11 4.6E-16 107.6 10.1 84 183-284 1-85 (85)
51 cd02852 Isoamylase_N_term Isoa 99.1 2.6E-10 5.7E-15 107.2 9.5 79 183-269 1-95 (119)
52 PRK05402 glycogen branching en 99.1 1.4E-10 3.1E-15 140.6 6.5 82 174-266 13-96 (726)
53 cd02858 Esterase_N_term Estera 98.9 3.5E-09 7.7E-14 93.4 7.7 66 189-267 6-72 (85)
54 cd02861 E_set_proteins_like E 98.8 1.1E-08 2.4E-13 89.6 8.0 55 190-253 3-57 (82)
55 PF02638 DUF187: Glycosyl hydr 98.5 7.6E-07 1.6E-11 97.6 12.8 188 321-515 17-225 (311)
56 PF14701 hDGE_amylase: glucano 98.5 2.5E-07 5.5E-12 103.3 7.8 82 320-403 19-107 (423)
57 cd02688 E_set E or "early" set 98.5 5.7E-07 1.2E-11 78.0 8.3 60 189-255 4-63 (83)
58 PF11941 DUF3459: Domain of un 98.4 1.1E-06 2.5E-11 77.9 9.2 83 699-811 1-89 (89)
59 PRK14508 4-alpha-glucanotransf 98.3 4.4E-05 9.5E-10 88.6 19.7 238 373-652 198-456 (497)
60 PF14871 GHL6: Hypothetical gl 98.2 9.1E-06 2E-10 77.6 9.5 121 328-464 4-132 (132)
61 PF02446 Glyco_hydro_77: 4-alp 98.0 2.3E-05 5E-10 91.4 10.7 194 318-525 13-340 (496)
62 PLN02635 disproportionating en 97.9 0.00014 3.1E-09 84.6 14.9 139 373-525 224-377 (538)
63 PF02324 Glyco_hydro_70: Glyco 97.9 2.2E-05 4.7E-10 90.5 7.2 98 301-400 563-674 (809)
64 PLN02950 4-alpha-glucanotransf 97.9 0.00097 2.1E-08 82.5 22.1 145 190-349 154-308 (909)
65 COG1649 Uncharacterized protei 97.8 0.00016 3.4E-09 81.1 12.9 183 322-515 63-268 (418)
66 cd02859 AMPKbeta_GBD_like AMP- 97.8 4.1E-05 8.9E-10 66.5 6.5 53 191-253 4-56 (79)
67 PRK14510 putative bifunctional 97.7 0.0019 4.1E-08 82.7 21.5 140 373-525 932-1082(1221)
68 PF02065 Melibiase: Melibiase; 97.3 0.005 1.1E-07 69.6 15.7 134 323-468 58-195 (394)
69 cd06594 GH31_glucosidase_YihQ 97.3 0.0012 2.6E-08 72.8 9.9 135 321-465 21-165 (317)
70 cd06593 GH31_xylosidase_YicI Y 97.2 0.0054 1.2E-07 67.4 14.1 174 321-518 22-206 (308)
71 cd06592 GH31_glucosidase_KIAA1 97.1 0.0027 5.8E-08 69.6 10.7 128 321-466 28-165 (303)
72 KOG3625 Alpha amylase [Carbohy 97.1 0.00059 1.3E-08 80.5 5.2 81 320-402 139-226 (1521)
73 TIGR00217 malQ 4-alpha-glucano 96.9 0.028 6E-07 65.8 16.6 139 373-524 212-365 (513)
74 PF02324 Glyco_hydro_70: Glyco 96.8 0.022 4.9E-07 66.4 14.4 38 431-468 144-190 (809)
75 cd06597 GH31_transferase_CtsY 96.7 0.0034 7.4E-08 69.9 7.5 140 321-466 22-187 (340)
76 PF00150 Cellulase: Cellulase 96.6 0.033 7.1E-07 59.7 14.2 143 325-519 22-172 (281)
77 PF13200 DUF4015: Putative gly 96.5 0.025 5.3E-07 62.0 12.2 166 326-509 15-186 (316)
78 PF13199 Glyco_hydro_66: Glyco 96.4 0.027 5.9E-07 66.2 12.8 126 328-467 122-269 (559)
79 PRK11052 malQ 4-alpha-glucanot 96.4 0.027 5.9E-07 68.1 13.0 140 373-525 355-505 (695)
80 cd06591 GH31_xylosidase_XylS X 96.3 0.017 3.7E-07 63.8 9.7 130 321-466 22-159 (319)
81 cd06602 GH31_MGAM_SI_GAA This 96.2 0.025 5.4E-07 63.1 10.3 133 322-466 23-165 (339)
82 cd06600 GH31_MGAM-like This fa 96.1 0.0083 1.8E-07 66.2 6.0 129 321-465 22-159 (317)
83 PRK14582 pgaB outer membrane N 96.0 0.069 1.5E-06 64.2 13.1 132 321-465 332-467 (671)
84 cd06599 GH31_glycosidase_Aec37 95.9 0.014 3.1E-07 64.4 6.4 128 324-465 30-167 (317)
85 COG1640 MalQ 4-alpha-glucanotr 95.7 0.082 1.8E-06 61.3 11.9 87 373-468 210-308 (520)
86 cd06604 GH31_glucosidase_II_Ma 95.5 0.045 9.8E-07 61.0 8.6 129 321-466 22-159 (339)
87 PRK14507 putative bifunctional 95.4 0.17 3.6E-06 66.4 14.3 139 373-524 386-535 (1693)
88 PRK10426 alpha-glucosidase; Pr 95.4 0.18 3.8E-06 60.9 13.8 135 323-468 221-365 (635)
89 PF11852 DUF3372: Domain of un 95.4 0.024 5.2E-07 56.1 5.2 52 694-745 41-115 (168)
90 smart00632 Aamy_C Aamy_C domai 95.3 0.081 1.8E-06 46.1 7.9 69 725-812 6-78 (81)
91 TIGR01370 cysRS possible cyste 95.2 0.083 1.8E-06 57.9 9.4 83 423-517 127-211 (315)
92 PF01055 Glyco_hydro_31: Glyco 95.1 0.038 8.1E-07 63.9 6.6 130 322-466 42-180 (441)
93 PRK10658 putative alpha-glucos 94.2 0.07 1.5E-06 64.6 6.1 126 324-466 284-418 (665)
94 cd06598 GH31_transferase_CtsZ 93.9 0.11 2.5E-06 57.3 6.7 132 321-465 22-163 (317)
95 PF07745 Glyco_hydro_53: Glyco 93.8 0.41 9E-06 52.9 10.8 147 327-517 27-174 (332)
96 cd06542 GH18_EndoS-like Endo-b 93.2 0.31 6.7E-06 51.9 8.4 64 371-464 49-112 (255)
97 cd06562 GH20_HexA_HexB-like Be 92.9 2.4 5.3E-05 47.5 15.2 179 322-522 17-214 (348)
98 cd06595 GH31_xylosidase_XylS-l 92.7 0.23 4.9E-06 54.2 6.6 129 321-465 23-158 (292)
99 cd02875 GH18_chitobiase Chitob 92.4 0.62 1.3E-05 52.4 9.7 84 376-512 67-151 (358)
100 COG1501 Alpha-glucosidases, fa 92.3 0.2 4.3E-06 61.5 5.9 87 376-468 324-417 (772)
101 KOG3625 Alpha amylase [Carbohy 91.6 6.6 0.00014 48.0 16.8 68 429-524 497-569 (1521)
102 cd02742 GH20_hexosaminidase Be 91.5 2 4.4E-05 47.1 12.3 166 321-520 14-194 (303)
103 cd06564 GH20_DspB_LnbB-like Gl 91.2 2.7 5.9E-05 46.6 13.1 170 322-520 16-203 (326)
104 cd06601 GH31_lyase_GLase GLase 91.2 0.52 1.1E-05 52.4 7.3 107 322-465 23-132 (332)
105 cd06603 GH31_GANC_GANAB_alpha 91.0 0.36 7.9E-06 53.8 5.9 129 321-465 22-161 (339)
106 cd06545 GH18_3CO4_chitinase Th 89.7 2.8 6E-05 44.7 11.1 87 372-509 45-131 (253)
107 KOG1065 Maltase glucoamylase a 89.7 1.7 3.7E-05 52.7 10.1 131 320-465 308-447 (805)
108 PF14488 DUF4434: Domain of un 89.5 0.91 2E-05 45.3 6.7 65 328-396 24-88 (166)
109 PLN02763 hydrolase, hydrolyzin 89.0 0.84 1.8E-05 57.1 7.2 129 321-466 199-336 (978)
110 PRK12568 glycogen branching en 88.8 0.95 2E-05 55.1 7.3 79 174-265 22-102 (730)
111 PF01120 Alpha_L_fucos: Alpha- 88.6 3.2 6.9E-05 46.5 11.0 149 327-517 94-243 (346)
112 cd05808 CBM20_alpha_amylase Al 88.0 1.4 3E-05 39.3 6.3 57 191-253 3-65 (95)
113 cd06568 GH20_SpHex_like A subg 87.2 8.9 0.00019 42.6 13.3 167 321-519 16-197 (329)
114 smart00812 Alpha_L_fucos Alpha 86.7 9 0.00019 43.5 13.2 115 328-465 85-202 (384)
115 PF02449 Glyco_hydro_42: Beta- 86.7 2.5 5.4E-05 47.8 8.8 118 326-464 12-136 (374)
116 cd06589 GH31 The enzymes of gl 86.4 2.5 5.4E-05 45.4 8.3 93 320-466 21-116 (265)
117 PF14883 GHL13: Hypothetical g 85.4 21 0.00046 38.5 14.2 167 327-515 20-189 (294)
118 COG3867 Arabinogalactan endo-1 84.7 8.5 0.00018 41.4 10.7 153 324-516 63-219 (403)
119 cd06565 GH20_GcnA-like Glycosy 84.5 14 0.00031 40.4 13.1 167 321-520 15-188 (301)
120 cd06563 GH20_chitobiase-like T 84.3 22 0.00047 40.0 14.8 131 371-520 84-228 (357)
121 COG3280 TreY Maltooligosyl tre 84.3 0.71 1.5E-05 55.0 2.9 45 699-744 775-827 (889)
122 PF10438 Cyc-maltodext_C: Cycl 83.6 1.8 4E-05 37.4 4.5 20 725-744 7-30 (78)
123 cd06547 GH85_ENGase Endo-beta- 82.9 2.4 5.2E-05 47.3 6.3 95 377-516 50-145 (339)
124 cd02871 GH18_chitinase_D-like 82.2 4.9 0.00011 44.3 8.4 61 371-464 58-118 (312)
125 PF08533 Glyco_hydro_42C: Beta 81.7 4.6 9.9E-05 32.7 5.9 46 735-812 12-57 (58)
126 PRK14705 glycogen branching en 80.5 3.6 7.9E-05 53.0 7.3 81 175-265 516-598 (1224)
127 PF00686 CBM_20: Starch bindin 80.3 2 4.3E-05 38.5 3.7 60 191-256 4-73 (96)
128 COG3589 Uncharacterized conser 80.2 2 4.3E-05 46.9 4.2 53 328-396 20-72 (360)
129 cd06569 GH20_Sm-chitobiase-lik 79.3 9.6 0.00021 44.2 9.8 84 371-454 95-192 (445)
130 cd02874 GH18_CFLE_spore_hydrol 78.4 13 0.00028 40.9 10.1 89 375-509 47-136 (313)
131 cd05816 CBM20_DPE2_repeat2 Dis 78.3 8.9 0.00019 34.6 7.3 60 191-255 2-68 (99)
132 PF01301 Glyco_hydro_35: Glyco 77.5 1.9 4.1E-05 47.7 3.3 59 327-395 27-85 (319)
133 COG1523 PulA Type II secretory 77.1 5.1 0.00011 48.7 6.9 83 190-272 68-155 (697)
134 PLN03236 4-alpha-glucanotransf 77.1 3.2 6.9E-05 50.7 5.1 90 373-468 274-372 (745)
135 cd05814 CBM20_Prei4 Prei4, N-t 76.7 5.8 0.00013 37.2 5.9 56 191-252 3-67 (120)
136 PF13204 DUF4038: Protein of u 75.7 5.3 0.00012 43.5 6.1 66 328-397 34-110 (289)
137 cd06570 GH20_chitobiase-like_1 75.3 20 0.00043 39.6 10.4 120 323-455 18-146 (311)
138 cd06543 GH18_PF-ChiA-like PF-C 75.1 50 0.0011 36.2 13.3 93 331-464 19-112 (294)
139 PLN02316 synthase/transferase 71.6 46 0.00099 42.6 13.4 33 317-349 601-633 (1036)
140 PF10566 Glyco_hydro_97: Glyco 71.4 48 0.001 35.8 11.8 63 321-393 30-93 (273)
141 COG2342 Predicted extracellula 71.0 30 0.00064 37.2 9.8 157 327-517 33-191 (300)
142 TIGR03849 arch_ComA phosphosul 70.5 8.8 0.00019 40.4 5.9 47 327-393 74-120 (237)
143 PF05913 DUF871: Bacterial pro 69.2 8.2 0.00018 43.4 5.7 58 321-396 12-70 (357)
144 PLN03236 4-alpha-glucanotransf 68.6 9.3 0.0002 46.8 6.3 59 317-376 77-139 (745)
145 cd05809 CBM20_beta_amylase Bet 68.2 16 0.00035 32.9 6.4 60 191-256 5-73 (99)
146 cd05817 CBM20_DSP Dual-specifi 67.5 16 0.00036 32.9 6.4 57 191-253 2-64 (100)
147 COG2730 BglC Endoglucanase [Ca 67.2 8.3 0.00018 44.2 5.4 59 326-394 75-137 (407)
148 PLN03059 beta-galactosidase; P 66.9 8.5 0.00018 47.5 5.5 56 328-393 63-118 (840)
149 PF03198 Glyco_hydro_72: Gluca 64.7 9.8 0.00021 41.6 5.0 49 328-399 57-105 (314)
150 PF14701 hDGE_amylase: glucano 64.6 12 0.00027 42.7 6.0 40 427-468 359-404 (423)
151 cd02857 CD_pullulan_degrading_ 63.8 20 0.00043 32.8 6.3 64 180-254 11-82 (116)
152 cd05467 CBM20 The family 20 ca 63.6 22 0.00047 31.5 6.3 60 191-255 2-69 (96)
153 cd00598 GH18_chitinase-like Th 62.6 98 0.0021 31.3 11.9 65 371-465 47-113 (210)
154 PRK11052 malQ 4-alpha-glucanot 62.1 14 0.00031 45.1 6.3 64 316-380 158-224 (695)
155 PF00728 Glyco_hydro_20: Glyco 61.9 9.8 0.00021 42.3 4.6 125 321-456 16-156 (351)
156 PF00724 Oxidored_FMN: NADH:fl 57.2 41 0.00089 37.5 8.5 28 372-401 79-106 (341)
157 cd02931 ER_like_FMN Enoate red 56.9 1.7E+02 0.0036 33.3 13.5 25 372-398 82-106 (382)
158 cd05813 CBM20_genethonin_1 Gen 56.2 41 0.0009 29.9 6.8 55 191-252 3-63 (95)
159 PF03644 Glyco_hydro_85: Glyco 55.9 19 0.00041 39.7 5.4 94 377-516 46-140 (311)
160 PRK10605 N-ethylmaleimide redu 55.4 1.3E+02 0.0029 33.8 12.3 28 372-401 78-105 (362)
161 cd04733 OYE_like_2_FMN Old yel 54.3 1.3E+02 0.0027 33.6 11.8 28 372-401 81-108 (338)
162 TIGR03356 BGL beta-galactosida 54.3 31 0.00068 39.8 7.1 101 319-456 50-150 (427)
163 PTZ00445 p36-lilke protein; Pr 52.8 29 0.00062 36.0 5.7 65 321-391 26-96 (219)
164 cd06546 GH18_CTS3_chitinase GH 52.8 57 0.0012 34.9 8.4 66 369-464 55-120 (256)
165 PF02679 ComA: (2R)-phospho-3- 52.3 26 0.00056 37.2 5.5 48 327-394 87-134 (244)
166 PF13380 CoA_binding_2: CoA bi 51.9 19 0.0004 33.6 3.9 39 327-391 69-107 (116)
167 PF09260 DUF1966: Domain of un 51.6 37 0.0008 30.4 5.6 69 726-814 5-82 (91)
168 PRK13210 putative L-xylulose 5 51.2 1.3E+02 0.0029 32.0 11.1 51 328-391 20-70 (284)
169 KOG0496 Beta-galactosidase [Ca 50.6 24 0.00052 42.1 5.3 59 327-395 52-110 (649)
170 cd02803 OYE_like_FMN_family Ol 49.6 75 0.0016 35.0 9.0 86 372-466 76-164 (327)
171 cd02929 TMADH_HD_FMN Trimethyl 49.4 1.7E+02 0.0038 33.0 12.0 29 371-401 81-109 (370)
172 cd04734 OYE_like_3_FMN Old yel 49.2 1.6E+02 0.0035 32.9 11.5 28 372-401 76-103 (343)
173 cd06548 GH18_chitinase The GH1 49.2 44 0.00095 36.9 7.1 29 436-464 105-133 (322)
174 cd04747 OYE_like_5_FMN Old yel 48.8 1.5E+02 0.0034 33.4 11.3 132 372-513 77-212 (361)
175 smart00636 Glyco_18 Glycosyl h 48.5 45 0.00098 36.8 7.1 55 436-509 87-142 (334)
176 PF03423 CBM_25: Carbohydrate 47.6 39 0.00085 29.8 5.1 34 199-232 17-55 (87)
177 cd02872 GH18_chitolectin_chito 47.0 41 0.00088 37.7 6.5 63 436-514 92-155 (362)
178 cd02932 OYE_YqiM_FMN Old yello 46.6 2.9E+02 0.0063 30.7 13.1 68 327-401 33-103 (336)
179 cd02879 GH18_plant_chitinase_c 44.3 54 0.0012 35.8 6.8 53 436-508 88-141 (299)
180 cd02876 GH18_SI-CLP Stabilin-1 43.6 49 0.0011 36.4 6.4 59 436-510 88-147 (318)
181 PRK13523 NADPH dehydrogenase N 43.4 2.4E+02 0.0052 31.5 11.8 158 333-510 46-206 (337)
182 PF00704 Glyco_hydro_18: Glyco 43.2 54 0.0012 36.0 6.7 64 437-517 96-164 (343)
183 COG1306 Uncharacterized conser 43.1 80 0.0017 34.3 7.3 131 323-466 76-219 (400)
184 COG1902 NemA NADH:flavin oxido 42.6 2.2E+02 0.0047 32.3 11.2 129 372-512 82-215 (363)
185 TIGR01210 conserved hypothetic 41.8 37 0.00079 37.5 4.9 60 327-396 117-178 (313)
186 PRK08207 coproporphyrinogen II 41.7 48 0.001 39.0 6.1 63 325-397 267-330 (488)
187 cd04735 OYE_like_4_FMN Old yel 41.5 2.7E+02 0.0059 31.2 11.9 129 372-510 77-208 (353)
188 cd05811 CBM20_glucoamylase Glu 41.4 81 0.0018 28.5 6.4 60 191-256 9-78 (106)
189 PRK10076 pyruvate formate lyas 41.0 65 0.0014 33.5 6.4 59 328-391 149-211 (213)
190 PLN02411 12-oxophytodienoate r 40.2 4.5E+02 0.0097 30.0 13.5 28 372-401 86-113 (391)
191 cd06549 GH18_trifunctional GH1 39.8 57 0.0012 35.6 6.1 54 435-509 83-137 (298)
192 cd05815 CBM20_DPE2_repeat1 Dis 39.7 99 0.0021 27.8 6.6 58 191-254 2-68 (101)
193 TIGR00433 bioB biotin syntheta 39.1 62 0.0013 35.0 6.2 60 327-397 123-182 (296)
194 TIGR00539 hemN_rel putative ox 39.0 53 0.0011 36.9 5.8 64 327-400 100-164 (360)
195 cd02877 GH18_hevamine_XipI_cla 38.9 5E+02 0.011 28.2 13.0 59 331-392 18-78 (280)
196 PF01212 Beta_elim_lyase: Beta 38.0 29 0.00062 37.9 3.3 23 371-393 143-165 (290)
197 cd02930 DCR_FMN 2,4-dienoyl-Co 37.5 3.5E+02 0.0076 30.3 12.0 29 371-401 75-103 (353)
198 PRK05628 coproporphyrinogen II 36.1 44 0.00096 37.7 4.6 65 326-400 107-172 (375)
199 PRK01060 endonuclease IV; Prov 35.9 72 0.0016 34.1 6.0 51 324-389 13-63 (281)
200 PRK08208 coproporphyrinogen II 35.9 44 0.00095 38.6 4.6 66 326-401 140-206 (430)
201 PF07071 DUF1341: Protein of u 35.2 78 0.0017 32.5 5.5 43 327-389 138-180 (218)
202 PRK07094 biotin synthase; Prov 35.2 53 0.0012 36.1 5.0 62 327-398 129-190 (323)
203 cd02933 OYE_like_FMN Old yello 34.9 4.4E+02 0.0096 29.4 12.2 28 372-401 76-103 (338)
204 PRK05692 hydroxymethylglutaryl 34.5 3.4E+02 0.0075 29.5 11.0 59 373-466 120-179 (287)
205 PRK06256 biotin synthase; Vali 33.9 51 0.0011 36.5 4.6 61 326-397 151-211 (336)
206 PRK05904 coproporphyrinogen II 33.4 51 0.0011 37.0 4.5 63 327-399 103-166 (353)
207 PRK09852 cryptic 6-phospho-bet 33.2 1.9E+02 0.0041 34.0 9.2 104 318-456 66-169 (474)
208 PRK08255 salicylyl-CoA 5-hydro 32.0 4.4E+02 0.0095 32.9 12.7 28 372-401 474-502 (765)
209 cd05820 CBM20_novamyl Novamyl 31.9 1.9E+02 0.0041 26.2 7.2 60 191-256 5-75 (103)
210 PRK09856 fructoselysine 3-epim 31.7 88 0.0019 33.3 5.9 48 328-390 17-64 (275)
211 PF02903 Alpha-amylase_N: Alph 31.7 73 0.0016 29.6 4.6 61 186-253 18-89 (120)
212 PRK08446 coproporphyrinogen II 31.3 76 0.0016 35.5 5.4 63 327-399 98-161 (350)
213 PRK09249 coproporphyrinogen II 30.5 74 0.0016 37.0 5.3 66 326-401 150-216 (453)
214 PRK15447 putative protease; Pr 30.3 1E+02 0.0022 33.8 6.1 52 320-391 15-66 (301)
215 PRK08599 coproporphyrinogen II 29.4 73 0.0016 36.0 4.9 64 327-400 100-164 (377)
216 PLN03231 putative alpha-galact 28.7 8.9E+02 0.019 27.3 14.6 141 323-465 21-185 (357)
217 PRK13347 coproporphyrinogen II 28.7 75 0.0016 36.9 5.0 64 327-400 152-216 (453)
218 PRK05660 HemN family oxidoredu 28.6 84 0.0018 35.6 5.2 65 327-401 107-172 (378)
219 PRK05799 coproporphyrinogen II 28.3 81 0.0018 35.5 5.0 65 326-400 98-163 (374)
220 COG0041 PurE Phosphoribosylcar 28.1 63 0.0014 31.7 3.4 52 321-394 14-65 (162)
221 KOG0256 1-aminocyclopropane-1- 27.9 56 0.0012 37.1 3.4 59 322-398 210-271 (471)
222 cd05818 CBM20_water_dikinase P 27.9 2.2E+02 0.0048 25.1 6.8 58 191-256 4-66 (92)
223 COG0520 csdA Selenocysteine ly 27.3 53 0.0011 37.7 3.3 36 359-394 165-200 (405)
224 TIGR00542 hxl6Piso_put hexulos 26.8 1E+02 0.0022 33.1 5.2 50 328-390 20-69 (279)
225 TIGR00538 hemN oxygen-independ 26.3 87 0.0019 36.4 4.9 64 327-400 151-215 (455)
226 cd05810 CBM20_alpha_MTH Glucan 26.0 1.7E+02 0.0036 26.3 5.6 49 200-254 15-67 (97)
227 cd05014 SIS_Kpsf KpsF-like pro 25.9 1.6E+02 0.0035 27.1 5.9 63 328-391 17-79 (128)
228 PRK12928 lipoyl synthase; Prov 25.7 1.6E+02 0.0035 32.1 6.5 60 321-391 217-276 (290)
229 PRK07379 coproporphyrinogen II 25.7 68 0.0015 36.7 3.8 65 327-401 115-180 (400)
230 PF15640 Tox-MPTase4: Metallop 25.6 63 0.0014 30.5 2.8 26 367-392 16-41 (132)
231 PRK09058 coproporphyrinogen II 25.5 80 0.0017 36.7 4.4 64 327-400 163-227 (449)
232 PLN02899 alpha-galactosidase 24.6 1.3E+03 0.028 28.1 13.9 143 322-465 50-217 (633)
233 TIGR03471 HpnJ hopanoid biosyn 24.4 1.2E+02 0.0027 35.3 5.8 60 327-396 287-346 (472)
234 cd00287 ribokinase_pfkB_like r 24.2 1.3E+02 0.0028 29.7 5.2 52 329-395 42-93 (196)
235 PF01261 AP_endonuc_2: Xylose 24.2 44 0.00096 33.4 1.8 45 330-391 1-45 (213)
236 PF09154 DUF1939: Domain of un 24.2 2.5E+02 0.0053 22.9 5.7 56 737-812 1-57 (57)
237 PRK14581 hmsF outer membrane N 23.8 7.5E+02 0.016 30.4 12.2 126 328-464 338-466 (672)
238 PRK05939 hypothetical protein; 23.8 90 0.002 35.6 4.4 29 367-395 142-170 (397)
239 PLN02389 biotin synthase 23.2 1.7E+02 0.0037 33.2 6.4 60 327-397 178-237 (379)
240 PRK05967 cystathionine beta-ly 23.0 97 0.0021 35.4 4.4 32 365-396 158-189 (395)
241 PF09196 DUF1953: Domain of un 22.9 93 0.002 25.1 2.8 40 726-768 8-48 (66)
242 KOG0259 Tyrosine aminotransfer 22.9 91 0.002 35.1 3.9 31 371-401 217-247 (447)
243 TIGR01211 ELP3 histone acetylt 22.6 97 0.0021 36.8 4.3 61 326-396 205-265 (522)
244 PRK09331 Sep-tRNA:Cys-tRNA syn 22.2 78 0.0017 35.8 3.4 30 367-396 169-198 (387)
245 PRK09028 cystathionine beta-ly 21.9 1E+02 0.0023 35.1 4.3 28 369-396 159-186 (394)
246 TIGR03581 EF_0839 conserved hy 21.8 1.4E+02 0.0031 31.0 4.8 42 327-388 138-179 (236)
247 PF07894 DUF1669: Protein of u 21.7 75 0.0016 34.5 2.9 26 368-394 132-157 (284)
248 cd00609 AAT_like Aspartate ami 21.4 1E+02 0.0022 33.4 4.1 53 330-398 125-177 (350)
249 PRK04302 triosephosphate isome 21.0 1.7E+02 0.0036 30.4 5.4 44 329-392 77-120 (223)
250 PRK09997 hydroxypyruvate isome 20.8 2.4E+02 0.0053 29.7 6.7 29 369-397 155-183 (258)
251 COG1640 MalQ 4-alpha-glucanotr 20.6 1.8E+02 0.0039 34.4 5.9 75 301-378 16-92 (520)
252 PRK15452 putative protease; Pr 20.6 1.6E+02 0.0034 34.3 5.5 49 329-391 15-64 (443)
253 cd06544 GH18_narbonin Narbonin 20.5 2.3E+02 0.0051 30.2 6.4 56 440-519 97-153 (253)
254 cd00615 Orn_deC_like Ornithine 20.4 67 0.0014 34.8 2.3 27 369-395 166-192 (294)
255 cd06452 SepCysS Sep-tRNA:Cys-t 20.2 77 0.0017 35.3 2.8 30 367-396 150-179 (361)
256 TIGR01324 cysta_beta_ly_B cyst 20.2 1.2E+02 0.0026 34.4 4.4 29 368-396 147-175 (377)
257 PRK06582 coproporphyrinogen II 20.2 1.3E+02 0.0028 34.3 4.7 65 327-401 111-175 (390)
No 1
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.1e-148 Score=1296.09 Aligned_cols=733 Identities=74% Similarity=1.278 Sum_probs=677.9
Q ss_pred cCccEEeCCCCCCCCCCccCcccCCCcccccccccccccccccccccccccccCCcccccCCcccccchhhhccCCCCCC
Q 003390 50 ASEKVLVPGSQSDDPSAVTDQLETPETVSEDIEVRNGIESLQMEDNENVEIEDHGPVTLQGKVSSEKSEVKREVGPRSIP 129 (823)
Q Consensus 50 ~s~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (823)
.+..+++|+++++..++++.+...+.......+........++++ ......++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 54 (758)
T PLN02447 2 LSEHVLSPDGLPDSAPSPSPAVDEPRPEDPGSPATEAPYPAKTED---------------------------NSAAASPP 54 (758)
T ss_pred CccccccCCCcCCCCCCCCCCCCcCCCCCcccccccCCccccccc---------------------------ccccccCC
Confidence 467889999999999888887777764444333332222222110 01122688
Q ss_pred CCCCCCcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCCcEEEEEecCCcCeEEEEeec
Q 003390 130 PPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDF 209 (823)
Q Consensus 130 ~~~~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~L~gdf 209 (823)
++.++.++++.||||+||+++|++|+..|.+++++|.+.+|||++|+++|++||+|+.++||+||||||+|++|+|+|||
T Consensus 55 ~~~~~~~~~~~d~~l~~~~~~~~~r~~~~~~~~~~i~~~~~~l~~f~~~y~~lGa~~~~~g~~FrvWAP~A~~V~LvGdF 134 (758)
T PLN02447 55 PPGDGLGIYEIDPMLEPYEDHLRYRYSRYRRRREEIEKNEGGLEAFSRGYEKFGFNRSEGGITYREWAPGAKAAALIGDF 134 (758)
T ss_pred CCCCcceeeecCcchhhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhceeEEecCCEEEEEECCCCCEEEEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC-cccccCccceeeccCCCC--CCCCcEEeCCCc
Q 003390 210 NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQAPGE--IPYNGIYYDPPE 286 (823)
Q Consensus 210 N~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~ 286 (823)
|+|++..++|++.++|+|+++||+ .+|.++++||++|||+|.+.+| ..+++|||++++++.|++ ..+++++|||++
T Consensus 135 N~W~~~~~~M~~~~~GvWe~~ip~-~~g~~~~~~G~~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~ 213 (758)
T PLN02447 135 NNWNPNAHWMTKNEFGVWEIFLPD-ADGSPAIPHGSRVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPE 213 (758)
T ss_pred CCCCCCccCceeCCCCEEEEEECC-ccccccCCCCCEEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCC
Confidence 999998999999999999999999 8899999999999999998866 468999999999998875 367999999976
Q ss_pred cccccccCCCCCCCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcC
Q 003390 287 EEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS 366 (823)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~IYE~hv~~f~~~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~ 366 (823)
.++|.|+++++..+.+++|||+|||+|+.++++|+|+++++++|||||+||||+||||||++++++++|||++++||+|+
T Consensus 214 ~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~ 293 (758)
T PLN02447 214 EEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS 293 (758)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc
Confidence 66799998887778899999999999998888999999998899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHH
Q 003390 367 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLS 446 (823)
Q Consensus 367 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~ 446 (823)
++|||++|||+||++||++||+||||||+||++.++..+++.|+|+...||+.++.++++.|++.+|||++++||+||++
T Consensus 294 ~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 294 SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHH
Confidence 99999999999999999999999999999999998777889999988889998888888999999999999999999999
Q ss_pred HHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCc
Q 003390 447 NARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF 526 (823)
Q Consensus 447 ~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~ 526 (823)
+++||++||||||||||+|++|+|.|||+..+|+++|++|||+++|.+++.||+++|+.|++.+|++++|||+++++|.+
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l 453 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTL 453 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCcccchhhhHHHHHHHHHHHhh-ccchhhhhhhHhhhccccccccceecccCcCcccccccchhhhccChhHH
Q 003390 527 CIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 605 (823)
Q Consensus 527 ~~~~~~gglgFd~~~~~~~~d~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~ 605 (823)
|+|+.+||+||||+|+|+|+++|+++|+. .++.|.++.+.+++.++++.+++|.|++|||++++|++|+++|+++++||
T Consensus 454 ~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~sl~~r~~~E~~I~y~eSHDevv~Gkksl~~~l~d~~my 533 (758)
T PLN02447 454 CRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVHTLTNRRYTEKCVAYAESHDQALVGDKTIAFWLMDKEMY 533 (758)
T ss_pred cccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHHHHhcccccCceEeccCCcCeeecCcchhHhhhcchhhh
Confidence 99999999999999999999999999995 68899999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCC
Q 003390 606 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 685 (823)
Q Consensus 606 ~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 685 (823)
+.|+++...++.++|+++++||+++++|++||.++|||||+|||+++|+|||+ .||++|++.+|++|++
T Consensus 534 ~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr-----------~~n~ws~~~~~~~W~L 602 (758)
T PLN02447 534 DGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPR-----------EGNGWSYDKCRRRWDL 602 (758)
T ss_pred hcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcc-----------cccccCcccccCCccc
Confidence 99999999999999999999999999999999989999999999999999999 4999999999988888
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEECCCCCcccceEEcccCCceEEEE
Q 003390 686 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 765 (823)
Q Consensus 686 ~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~v 765 (823)
.+.+.++|+.|++|+|+|++|++++++|..+++|+.+.+.+++||||+|..+||||||||++++.+|+|++|.+|+|+++
T Consensus 603 ~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~ll~V~NF~p~~s~~~Y~igvp~~G~y~~i 682 (758)
T PLN02447 603 ADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGDLVFVFNFHPTNSYSDYRVGCDKPGKYKIV 682 (758)
T ss_pred cCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCCeEEEEeCCCCCCCCCcEECCCCCCeEEEE
Confidence 76666689999999999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred EeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEEEccCccCCC
Q 003390 766 LDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADEEEQPL 821 (823)
Q Consensus 766 l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~~~~~~~~ 821 (823)
||||+..|||+++++....+.+.+.+++++++++.|+|||++++||++.++.+++.
T Consensus 683 lnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~~~~~ 738 (758)
T PLN02447 683 LDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDEDDEPA 738 (758)
T ss_pred ECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCcccccc
Confidence 99999999999998766667777788999999999999999999999987655543
No 2
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=2.7e-122 Score=1051.48 Aligned_cols=623 Identities=40% Similarity=0.798 Sum_probs=579.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCC-cEEEEEecCCcCeEEEEeecCCCCCcccc----
Q 003390 144 LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GITYREWAPGAKSASLIGDFNNWNPNADI---- 218 (823)
Q Consensus 144 l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~fr~WAP~A~~V~L~gdfN~w~~~~~~---- 218 (823)
.+.|++.|+.|++..++++++|.+.+++|+.|+++|+.||+|++++ +++|++|||+|...+|+||||+|+++++.
T Consensus 85 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~ 164 (872)
T PLN03244 85 DKIFAQFLRERHKALKDLKDEIFKRHFDFQDFASGFEILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREG 164 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHhhhhhhhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccc
Confidence 5789999999999999999999999999999999999999999986 79999999999999999999999998765
Q ss_pred -cccCCCceEEEEeCCCC--------------------------------------------------------------
Q 003390 219 -MTQNEFGVWEIFLPNNA-------------------------------------------------------------- 235 (823)
Q Consensus 219 -m~r~~~GvWei~ip~~~-------------------------------------------------------------- 235 (823)
|.|++.|+|+|.|+..+
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (872)
T PLN03244 165 HFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDDNDKGDSGVSAEEIFKKANDEYWEPGEDRFIKNRFEVAAKLYEQ 244 (872)
T ss_pred cccccccceEEEEechhhhcCCCchhhhHhhhccccccccCcCCCCHHHHHHHhhhhhcCCchhhHHHhHHHHHHHHHHH
Confidence 77999999999995432
Q ss_pred ---------------------------------------------C--C-------------------------------
Q 003390 236 ---------------------------------------------D--G------------------------------- 237 (823)
Q Consensus 236 ---------------------------------------------~--g------------------------------- 237 (823)
+ |
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (872)
T PLN03244 245 IFGPNGPETEEELEDIPDAETRYKAWKEEHKDDPPSNLPPCDIIDKGQGKEYDIFNVVDDPEWREKFRAKEPPIAYWLES 324 (872)
T ss_pred hhCCCCccchhhhccCcchHHHHHhhhhhcccCChhcCCCeEeeecCCCcccceeeeccCHHHHHHhhccCCChhhHHHh
Confidence 0 1
Q ss_pred -----------CCCCCCCCEEEEEEeCCCCcccccCccceeeccCCCCCCCCcEEeCCCccccccccCCCCCCCCCceEE
Q 003390 238 -----------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKKPKSLRIY 306 (823)
Q Consensus 238 -----------~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~IY 306 (823)
.++|+||++||+++.+++|..+|+|+|+++++|++....|.+++|+|++.++|.|++++|++|..++||
T Consensus 325 ~~~~~~w~~~~~~~i~H~s~~k~~~~~~~g~~~RiPaw~~~~~~~~~~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIY 404 (872)
T PLN03244 325 RKGRKAWLKKYIPAIPHGSKYRLYFNTPDGPLERIPAWATYVLPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIY 404 (872)
T ss_pred hcccCceeecccCCCCCCCeEEEEEEcCCCCcccCCCCeeeEEecCCCCceeeeEeCCCcccCCccCCCCCCCCCCceEE
Confidence 225899999999999988878999999999999988888999999999878899999999999999999
Q ss_pred EeecCCCCCCCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcC
Q 003390 307 EAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG 386 (823)
Q Consensus 307 E~hv~~f~~~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~G 386 (823)
|+|||+++.++++|||++|++ . +++||||+++|||++|||+||++||++|
T Consensus 405 E~HvGms~~e~kv~ty~eF~~-~-----------------------------vt~fFApssRYGTPeDLK~LVD~aH~~G 454 (872)
T PLN03244 405 ECHVGISGSEPKISSFEEFTE-K-----------------------------VTNFFAASSRYGTPDDFKRLVDEAHGLG 454 (872)
T ss_pred EEEeeecCCCCCcccHHHHhh-c-----------------------------cCcccccCcccCCHHHHHHHHHHHHHCC
Confidence 999999999999999999995 2 6899999999999999999999999999
Q ss_pred CEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 387 LLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 387 I~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
|+||||||+||++.+...+++.|+|++..||+.+.++.+..||++.||+++++|++||+++++||++||||||||||+|+
T Consensus 455 I~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVt 534 (872)
T PLN03244 455 LLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLA 534 (872)
T ss_pred CEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecch
Confidence 99999999999999877789999998888999888888999999999999999999999999999999999999999999
Q ss_pred cccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccchhhhHHHH
Q 003390 467 SMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIA 546 (823)
Q Consensus 467 ~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~ 546 (823)
+|+|.|||+ ..|++++..+++...|.+++.||+++|+.+++.+|++++|||+++++|.+|+|..+||+||||+|+|+|+
T Consensus 535 SMLY~d~G~-~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwm 613 (872)
T PLN03244 535 SMIYTHNGF-ASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAP 613 (872)
T ss_pred hheeecccc-ccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcch
Confidence 999999999 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-ccchhhhhhhHhhh-ccccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHH
Q 003390 547 DKWIELLKK-RDEDWKMGAIVHTM-TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIAL 624 (823)
Q Consensus 547 d~~~~~l~~-~~~~~~~~~~~~~l-~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 624 (823)
++|+++|+. .+..|.++.+.+++ +++++.+++|+|+||||++.+|++++++|+++++||..|. .++++.|++++
T Consensus 614 dd~lkylk~~pderw~~~~ItfsL~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~----~~~vv~Rg~aL 689 (872)
T PLN03244 614 DMWLDFLDNIPDHEWSMSKIVSTLIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLG----GKELLDRGCSL 689 (872)
T ss_pred HHHHHHHHhCCCcccCHHHHhhhhhcccCCcceEEEEecccceeccccchHHhhhcccccccccc----cchhhhhhhHH
Confidence 999999995 56679999999987 6778888999999999999999999999999999998873 45678899999
Q ss_pred HHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHH
Q 003390 625 HKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQ 704 (823)
Q Consensus 625 ~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li 704 (823)
+||++++++++||.++|||||+|||+++|.++|+ .||++++..+|++|++.+. ..++.|++|+|+|+
T Consensus 690 hKMiRllt~~~~G~kkLnFMGNEFGhpe~~dfPr-----------~gN~~s~~~arrdW~Lld~--~~hk~L~~FdrdLn 756 (872)
T PLN03244 690 HKMIRLITFTIGGHAYLNFMGNEFGHPERIEFPM-----------PSNNFSFSLANRCWDLLEN--EVHHHLFSFDKDLM 756 (872)
T ss_pred HHHHHHHHHHccCccceeecccccCCchheeccc-----------cCCCccccccccCccccCC--hhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 5999999999888777553 35899999999999
Q ss_pred HHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCcc
Q 003390 705 HLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAE 784 (823)
Q Consensus 705 ~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~ 784 (823)
+|++++++|..+++|+.+.+.+++||||+|..+||||||+|++++.+|+|++|.+|+|+++||||+..|||+++++...
T Consensus 757 ~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~~- 835 (872)
T PLN03244 757 DLDENEGILSRGLPNIHHVKDAAMVISFMRGPFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEEDH- 835 (872)
T ss_pred HHHhcCcccccCCcEEeeecCCCCEEEEEecCEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCCc-
Confidence 9999999999999999999999999999999999999999877899999999999999999999999999999987554
Q ss_pred ccc--cccccCCCCeEEEEEEcCceEEEEEEcc
Q 003390 785 YFS--LEGWYDDQPHSFLVYAPSRTAVVYALAD 815 (823)
Q Consensus 785 ~~~--~~~~~~~~~~~i~l~lp~~s~~V~~~~~ 815 (823)
+.+ ...++++++++|.|+|||+|++||++.+
T Consensus 836 ~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~ 868 (872)
T PLN03244 836 YLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSR 868 (872)
T ss_pred eeecccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 443 4456899999999999999999999865
No 3
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.5e-118 Score=1039.54 Aligned_cols=673 Identities=42% Similarity=0.789 Sum_probs=587.8
Q ss_pred cCCCCCCCCCCCCcceecCCC---------CcchHHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCC-cEE
Q 003390 123 VGPRSIPPPGAGQNIYEIDPN---------LLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDT-GIT 192 (823)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~dp~---------l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~-gv~ 192 (823)
.|+|+-.+.+++.+- +||. .+.|+++|++||+.+++++.+|.+++++|..|+++|+.||+|++.+ |+.
T Consensus 54 ~~~~~~~~~~~~~~~--~~~vgf~~~~~~~~~~f~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~ 131 (897)
T PLN02960 54 KKKRQQEPGSDAEAG--VDPVGFLTRLGISDRAFAQFLRERHKALKDLKWEIFKRHIDLKEFASGFELLGMHRHPEHRVD 131 (897)
T ss_pred hhhcccCCCCCcccC--cchhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhhHHHHhccccCcccCeE
Confidence 344444545555542 5665 6889999999999999999999999999999999999999999986 899
Q ss_pred EEEecCCcCeEEEEeecCCCCCcccccc-----cCCCceEEEEeCCCC--------------------------------
Q 003390 193 YREWAPGAKSASLIGDFNNWNPNADIMT-----QNEFGVWEIFLPNNA-------------------------------- 235 (823)
Q Consensus 193 fr~WAP~A~~V~L~gdfN~w~~~~~~m~-----r~~~GvWei~ip~~~-------------------------------- 235 (823)
|++|||+|+.++|+||||+|+++++.|. |++.|+|+|.|+..+
T Consensus 132 ~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (897)
T PLN02960 132 FMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDDYDKGDSGIDIEEL 211 (897)
T ss_pred EEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccccccCCCCCCHHHH
Confidence 9999999999999999999999998765 889999999995432
Q ss_pred ---------------------------------------------------------------------------CC---
Q 003390 236 ---------------------------------------------------------------------------DG--- 237 (823)
Q Consensus 236 ---------------------------------------------------------------------------~g--- 237 (823)
+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (897)
T PLN02960 212 FQKMNDEYWEPGEDRFIKNRLEVPAKLYEQMFGPNGPQTLEELGDIPDAETRYKEWKKEHKDDDPSNLPPLDIIDTGQPY 291 (897)
T ss_pred HHHhhhhhcCCcchhhhhccchhHHHHHHHhhCCCCCcchhhhhccCccchhhhhhhhhccCCChhhCCCeeecCCCccc
Confidence 00
Q ss_pred ---------------------------------------CCCCCCCCEEEEEEeCCCCcccccCccceeeccCCCCCCCC
Q 003390 238 ---------------------------------------SPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPGEIPYN 278 (823)
Q Consensus 238 ---------------------------------------~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (823)
.+.+.||++|+|++++.++..+++||||+++...+....+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~gw~~~~ip~~~hG~~Yky~v~~~~g~~~~vdpyA~~~qp~~~~~~~~ 371 (897)
T PLN02960 292 DIFNVVTDPVWREKFLEKKPPLPYWEETRKGRKAWLKKYIPAIPHGSKYRVYFNTPDGPLERVPAWATYVLPDPDGKQWY 371 (897)
T ss_pred ccceeccCHHHHHHHhccCCCCcceeeeeecCCcEEEEEccCCCCCCEEEEEEEeCCCceEECCCcceeEeecCCCccce
Confidence 11368999999999988777788999999876655444456
Q ss_pred cEEeCCCccccccccCCCCCCCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCc
Q 003390 279 GIYYDPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYH 358 (823)
Q Consensus 279 ~~~~d~~~~~~~~~~~~~~~~~~~~~IYE~hv~~f~~~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~ 358 (823)
.++|+++....|.|++.+|..+.+++|||+|||+|+.++++|||++++++.|||||+||||+||||||++++.+.+|||+
T Consensus 372 ~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~ 451 (897)
T PLN02960 372 AIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYK 451 (897)
T ss_pred EEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCC
Confidence 78889865467999987776778999999999999988889999999977799999999999999999999999999999
Q ss_pred cccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCH
Q 003390 359 VTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW 438 (823)
Q Consensus 359 ~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~ 438 (823)
+++||+|+++|||++|||+||++||++||+||||+|+||++.++..++..|+|+...||+.+..+.+..|+++.|||+++
T Consensus 452 ~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~ 531 (897)
T PLN02960 452 VTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDH 531 (897)
T ss_pred cccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCH
Confidence 99999999999999999999999999999999999999999987678889999877888887778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEe
Q 003390 439 EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE 518 (823)
Q Consensus 439 ~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE 518 (823)
+||+||+++++||++||||||||||+|++|+|.|+|. ..|.++|.++++...|.+++.||+++|+.+++..|++++|||
T Consensus 532 eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~-~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAE 610 (897)
T PLN02960 532 EVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGF-ASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAE 610 (897)
T ss_pred HHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCc-cccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 9999999999999999999999999999999999887 467777777777778999999999999999999999999999
Q ss_pred cCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhh-ccchhhhhhhHhhhc-cccccccceecccCcCcccccccchh
Q 003390 519 DVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKK-RDEDWKMGAIVHTMT-NRRWLEKCVAYAESHDQALVGDKTIA 596 (823)
Q Consensus 519 ~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~-~~~~~~~~~~~~~l~-~~~~~~~~v~y~enHD~~r~g~~t~~ 596 (823)
+.+++|.+|.|..+||+||||+++|+++++|+++|+. ....|.+..+...+. ++...+++|+|+|||||+.+|++++.
T Consensus 611 dss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~~~~~~~~~v~Y~EnHDQVv~Gkrsl~ 690 (897)
T PLN02960 611 DATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLVKNKENADKMLSYAENHNQSISGGKSFA 690 (897)
T ss_pred CCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeeeccCcCCcceEEEEecCcCccccCcccHH
Confidence 9999999999999999999999999999999999986 346677777777776 66677889999999999999999999
Q ss_pred hhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCCC
Q 003390 597 FWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSY 676 (823)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~ 676 (823)
.++.+.+++.+++.. +.+.|++++++++++++++++|.++|+|||+|||+++|.++|+ ++|+.++
T Consensus 691 ~rL~g~~~~k~~~~~----~~~lRa~al~~~~rllt~~~~Pg~pLlFMG~EFGh~e~~~~Pd-----------P~n~~tf 755 (897)
T PLN02960 691 EILLGKNKESSPAVK----ELLLRGVSLHKMIRLITFTLGGSAYLNFMGNEFGHPERVEFPR-----------ASNNFSF 755 (897)
T ss_pred HHCCCchhhhhcccC----hhhhhhhhHHHHHHHHHHHhCCCCCEeeCccccCChhhhhCcC-----------CCCcccc
Confidence 888888777666542 3456788899998877655554346789999999988777877 5777777
Q ss_pred cccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEECCCCCcccceEEcc
Q 003390 677 DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFNFHWNSSYSDYRVGC 756 (823)
Q Consensus 677 ~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvv~Nf~~~~~~~~~~l~v 756 (823)
..++ ++|...+...++.|++|+|+|++||+++|+|..++.|+.+.+.+++||||.|+.+|||+||+|..++.+|+|++
T Consensus 756 ~~s~--LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~~llvV~NFsp~~~~~~Y~vgv 833 (897)
T PLN02960 756 SLAN--RRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHPTNSYEEYEVGV 833 (897)
T ss_pred cccc--CCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeCCeEEEEeCCCCCcCcCceECC
Confidence 6665 56666666679999999999999999999999999999888888899999999999999999766788999999
Q ss_pred cCCceEEEEEeCCCCCcCCccccCCCccc-cccccccCCCCeEEEEEEcCceEEEEEEcc
Q 003390 757 LKPGKYKIVLDSDDPLFGGYKRLDHNAEY-FSLEGWYDDQPHSFLVYAPSRTAVVYALAD 815 (823)
Q Consensus 757 ~~~g~~~~vl~sd~~~~gG~~~~~~~~~~-~~~~~~~~~~~~~i~l~lp~~s~~V~~~~~ 815 (823)
|.+|.|+++||||+..|||.++++..... .+...++++++++|+|+|||++++||++.+
T Consensus 834 P~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~~~si~i~LPp~sa~v~k~~~ 893 (897)
T PLN02960 834 EEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGLRNCLELTLPSRSAQVYKLAR 893 (897)
T ss_pred CCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCCCceEEEEeCCCEEEEEEEee
Confidence 99999999999999999999987654333 355668899999999999999999999864
No 4
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-119 Score=1010.87 Aligned_cols=690 Identities=57% Similarity=0.973 Sum_probs=650.3
Q ss_pred ccchhhhccCCCCCCCCCCCCcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcCCc-EEE
Q 003390 115 EKSEVKREVGPRSIPPPGAGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITY 193 (823)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~g-v~f 193 (823)
.+...+.+.+...+| +.+..+++++||||.+|..++++|++.+.+.++.|.+.+++|..|+++|+.||+|.++++ +.|
T Consensus 39 ~~~~~~~e~~~~~~p-~~~ve~~~~~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~y~~~g~h~~~d~~v~~ 117 (757)
T KOG0470|consen 39 YDLRSALEAKSGDLP-ADVVEKFYEIDPFLVPFALFLRERYKQLDDGLEFIGKSEGGLSAFSRGYEPLGTHRTPDGRVDF 117 (757)
T ss_pred hhhHHHhhhhcCCCC-hHHhhcccccccccccccccchhhHHHHHHHhhhhhhccCChhhhhccccccceeccCCCceee
Confidence 334455667777777 899999999999999999999999999999999999999999999999999999999998 999
Q ss_pred EEecCCcCeEEEEeecCCCCCcccccc-cCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC-cccccCccceeeccC
Q 003390 194 REWAPGAKSASLIGDFNNWNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG-IKDSIPAWIKFSVQA 271 (823)
Q Consensus 194 r~WAP~A~~V~L~gdfN~w~~~~~~m~-r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 271 (823)
++|||.|++|+++||||+|+.....|. +++.|+|++++|...+|..+++|++.+++.+.+++| ...++|||++++.+.
T Consensus 118 ~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s~~v~H~s~~~~~~~~p~g~~~~~~~~~~~~~~~~ 197 (757)
T KOG0470|consen 118 TEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGSGAVPHGSVSKIHLSTPYGETCKRIPAWATYVDQE 197 (757)
T ss_pred eeecccccccccccccCCCCCcccccCcccccceeEEecCcccCCCccccccceeEEEeecCCcceeeccChHhhcccCC
Confidence 999999999999999999999888777 889999999999999999999999999999999998 568999999999998
Q ss_pred CCCCCCCcEEeCCCccccccccCCCCCCCC-CceEEEeecCCCC-CCCCCCC---HHhhHhhhhhhHHHcCCCEEEECCc
Q 003390 272 PGEIPYNGIYYDPPEEEKYVFQHPQPKKPK-SLRIYEAHVGMSS-TEPIINT---YANFRDDVLPRIKRLGYNAVQIMAV 346 (823)
Q Consensus 272 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~IYE~hv~~f~-~~~~~G~---~~~~~~~~L~yLk~LGvt~I~L~Pi 346 (823)
+...++..++|+|+++..|.|++++|+.|+ +++|||+|||.|| .++++-+ |++|+++.||+||+||+||||||||
T Consensus 198 ~~~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi 277 (757)
T KOG0470|consen 198 GEGPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPI 277 (757)
T ss_pred CcccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeeh
Confidence 888889999999987788888888888886 9999999997665 4555555 9999965599999999999999999
Q ss_pred ccC-CCCCCCCCccccccCcCCCCCCHH------HHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCC-CCccc
Q 003390 347 QEH-SYYASFGYHVTNFFAPSSRCGTPD------DLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTD-GHYFH 418 (823)
Q Consensus 347 ~e~-~~~~~~GY~~~~~~a~~~~~Gt~e------dlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~-~~yf~ 418 (823)
+|| .++++|||+|++||++.+||||++ |||.||++||.+||-||||||+||++++..++++.|||++ .+||+
T Consensus 278 ~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fdGid~~~Yf~ 357 (757)
T KOG0470|consen 278 FEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFDGIDNSVYFH 357 (757)
T ss_pred hhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhccCcCCceEEE
Confidence 999 688899999999999999999999 9999999999999999999999999998889999999999 67999
Q ss_pred cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcc---cChhH
Q 003390 419 SGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFA---TDVDA 495 (823)
Q Consensus 419 ~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~---~d~~~ 495 (823)
.+++++|+.|+++.|||++|+|+++|+++|+||++||+|||||||.|++|+|.|+|...+|+++|.+|||.. .+.++
T Consensus 358 ~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~ 437 (757)
T KOG0470|consen 358 SGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDA 437 (757)
T ss_pred eCCcccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHHHhhhccCCCEEEEEecCCCCCCc-eeccccCCcccc--hhhhHHHHHHHHHHHhh-ccchhhhhhhHhhhcc
Q 003390 496 VVYLMLVNDMIHGLYPEAVSIGEDVSGMPTF-CIPVQDGGVGFD--YRLQMAIADKWIELLKK-RDEDWKMGAIVHTMTN 571 (823)
Q Consensus 496 ~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~-~~~~~~gglgFd--~~~~~~~~d~~~~~l~~-~~~~~~~~~~~~~l~~ 571 (823)
+.+++.+++.++...|+.|.++|+.+++|.. |.|..+|+.||| |+++|...++|++.|+. .++.|.++.+...+++
T Consensus 438 l~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN 517 (757)
T KOG0470|consen 438 LVYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTN 517 (757)
T ss_pred HHHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeec
Confidence 9999999999999999999999999999999 999999999999 99999999999999998 8999999999899999
Q ss_pred ccccccceecccCcCcccccc-cchhh-hccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccC
Q 003390 572 RRWLEKCVAYAESHDQALVGD-KTIAF-WLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 649 (823)
Q Consensus 572 ~~~~~~~v~y~enHD~~r~g~-~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G 649 (823)
+++++++++|+++||+..+|+ +|+++ |++++.||..|+...+.++.++|++++|||++++++++.|..+|+|||||||
T Consensus 518 ~R~~e~~v~y~~~HDq~~v~d~~T~af~~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~pl~fmGdEfG 597 (757)
T KOG0470|consen 518 RRYPEKSVNYAESHDQALVGDLVTIAFKWLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGAPLNFMGDEFG 597 (757)
T ss_pred cccccceeeeeeccCCccccceeeecchhhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCccceeccccccC
Confidence 999999999999999999999 99999 9999999999999999999999999999999999999887778899999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcccCc-ccCCCccccccc-hHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCC
Q 003390 650 HPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRR-RFDLGDADYLRY-RGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGD 727 (823)
Q Consensus 650 ~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~-~~~w~~~~~~~~-~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~ 727 (823)
|++|.++|+ .+|++++.++|+ +++..+.+..++ +.+.+|.++|+.|.+.+..++.+.+++...++.+
T Consensus 598 h~e~~d~~~-----------~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k~e~~ 666 (757)
T KOG0470|consen 598 HPEWLDFPR-----------YGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLKHEAD 666 (757)
T ss_pred CccccCCCc-----------ccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhccccccccccccccchhh
Confidence 999999998 599999999999 999998888888 8899999999999999999999999999999999
Q ss_pred cEEEEEcCcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCce
Q 003390 728 RVIVFERGNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRT 807 (823)
Q Consensus 728 ~Vlaf~R~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s 807 (823)
++++|+|+.+++||||+++.++.+|.|++..+|+|+.|+++|...+||+.++......++....+++++.++.||+|.++
T Consensus 667 ~~i~fer~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~VY~~~~~ 746 (757)
T KOG0470|consen 667 EVIVFERGPLLFVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQVYIPSRT 746 (757)
T ss_pred heeeeccCCeEEEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999998877777777788999999999999999
Q ss_pred EEEEEEccC
Q 003390 808 AVVYALADE 816 (823)
Q Consensus 808 ~~V~~~~~~ 816 (823)
++|+.....
T Consensus 747 a~vl~~~~~ 755 (757)
T KOG0470|consen 747 ATVLALLDT 755 (757)
T ss_pred ceEeeeccc
Confidence 999988653
No 5
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.6e-102 Score=907.52 Aligned_cols=582 Identities=25% Similarity=0.470 Sum_probs=494.8
Q ss_pred ChhhhhcccccCCcEEc----CCcEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCE
Q 003390 171 GLAAFSRGYEKFGFIRS----DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSR 246 (823)
Q Consensus 171 ~l~~f~~~y~~lG~~~~----~~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~ 246 (823)
+.+.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|+...++|.+.+.|||+++||+... |..
T Consensus 116 ~~g~~~~~y~~lGah~~~~~g~~Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~-------G~~ 188 (730)
T PRK12568 116 AAGDGQALRRALGAQHVQVGEVPGVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEA-------GAR 188 (730)
T ss_pred hCCchhhhHHhcCCeEeeECCCCcEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCC-------CCE
Confidence 33477889999999974 5689999999999999999999999998999998899999999998654 679
Q ss_pred EEEEEeCCCCcc-cccCccceeeccCCCCCCCCcEEeCCCccccccccCC-----C-C-CCCCCceEEEeecCCCCCC--
Q 003390 247 VKIHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----Q-P-KKPKSLRIYEAHVGMSSTE-- 316 (823)
Q Consensus 247 y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~-~-~~~~~~~IYE~hv~~f~~~-- 316 (823)
|||+|.+.+|.. ...|||++.+...+.+ .+++.++. .|.|++. + + ...++++|||+|||+|+..
T Consensus 189 YKYeI~~~~G~~~~k~DPYA~~~e~~p~~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~ 262 (730)
T PRK12568 189 YKYAITAADGRVLLKADPVARQTELPPAT---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGH 262 (730)
T ss_pred EEEEEEcCCCeEeecCCCcceEeecCCCC---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCC
Confidence 999999877753 6789999998776654 57887653 3666543 1 1 2357899999999999864
Q ss_pred CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 317 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 317 ~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
...++|++++++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+|
T Consensus 263 ~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 263 NQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 34679999997678999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCc
Q 003390 397 HASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 475 (823)
Q Consensus 397 H~~~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~ 475 (823)
|++.+. .++..|+|+. .|.+.++ .+.+..|++..|||++|+||+||+++++||++||||||||+|++++|+|.+++.
T Consensus 343 H~~~d~-~~l~~fdg~~-~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r 420 (730)
T PRK12568 343 HFPDDA-HGLAQFDGAA-LYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGR 420 (730)
T ss_pred cCCccc-cccccCCCcc-ccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhcccc
Confidence 999875 5778898864 4545443 366788988889999999999999999999999999999999999999998877
Q ss_pred cccccCCc-ccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHh
Q 003390 476 QVAFTGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLK 554 (823)
Q Consensus 476 ~~~f~~~~-~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~ 554 (823)
..+ .| .+.+|+.+|.++++||+++++.+++.+|++++|||+++.+|.++.+...+|+|||++|+|+|+++++++++
T Consensus 421 ~~g---~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~ 497 (730)
T PRK12568 421 AEG---EWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQ 497 (730)
T ss_pred ccc---cccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHh
Confidence 652 23 23468888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc--cchhhhhhhHhhhccccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHH
Q 003390 555 KR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVT 632 (823)
Q Consensus 555 ~~--~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ 632 (823)
.. ...+....+...+.. .+.++.| +..|||++..|++++.. .|+++. .+..+..|++.+++
T Consensus 498 ~dp~~r~~~h~~ltf~~~y-~~~e~fv-lp~SHDEvvhgk~sl~~---------kmpGd~------~~k~a~lR~~~~~~ 560 (730)
T PRK12568 498 RDPAERAHHHSQLTFGLVY-AFSERFV-LPLSHDEVVHGTGGLLG---------QMPGDD------WRRFANLRAYLALM 560 (730)
T ss_pred hCchhhhhhhhhhhhhhhh-hhhccEe-ccCCCcccccCchhhhh---------cCCCCH------HHHHHHHHHHHHHH
Confidence 63 334555555555543 4556655 78999999999887642 233331 24466778888999
Q ss_pred HhCCCcceEeecCcccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhc
Q 003390 633 MGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYG 711 (823)
Q Consensus 633 ltlpG~p~l~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~ 711 (823)
||+||.| |+|||+|||+. +|.. ..+++|...++..++.+.+|+|+|++||+++|
T Consensus 561 ~~~PGkk-LlFmG~Efgq~~ew~~------------------------~~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~p 615 (730)
T PRK12568 561 WAHPGDK-LLFMGAEFGQWADWNH------------------------DQSLDWHLLDGARHRGMQQLVGDLNAALRRTP 615 (730)
T ss_pred HhCCCcc-eeeCchhhCCcccccC------------------------CCCccccccCChhHHHHHHHHHHHHHHHHhCh
Confidence 9999995 66999999995 6642 24689998887788999999999999999999
Q ss_pred CC------CCCcEEEEeecCCCcEEEEEc--C-----cEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccc
Q 003390 712 FM------TSEHQYVSRKDEGDRVIVFER--G-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKR 778 (823)
Q Consensus 712 ~l------~~g~~~i~~~~~~~~Vlaf~R--~-----~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~ 778 (823)
+| ..|++|+.+.+.+++|+||.| + .+|||+||+| ..+.+|+|++|.+|.|+++||||+..|||++.
T Consensus 616 aL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~-~~~~~Y~ig~p~~G~~~eilNsd~~~ygG~~~ 694 (730)
T PRK12568 616 ALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTP-QPHHDYRVGVPRAGGWREILNTDSAHYGGSNL 694 (730)
T ss_pred hhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCC-CCccCeEECCCCCCeEEEEEcCchhhhCCCCc
Confidence 98 367999999998899999999 1 2999999996 68899999999999999999999999999987
Q ss_pred cCCCccccccccccCCCCeEEEEEEcCceEEEEEEc
Q 003390 779 LDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 814 (823)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~ 814 (823)
.+.. .+.++..+++++++|++|+|||++++||++.
T Consensus 695 ~n~~-~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~ 729 (730)
T PRK12568 695 GNSG-RLATEPTGMHGHAQSLRLTLPPLATIYLQAE 729 (730)
T ss_pred CCCC-ceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence 6543 3566677899999999999999999999975
No 6
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.7e-101 Score=900.82 Aligned_cols=575 Identities=27% Similarity=0.515 Sum_probs=482.3
Q ss_pred hhhcccccCCcEEcCC----cEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003390 174 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 249 (823)
Q Consensus 174 ~f~~~y~~lG~~~~~~----gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~ 249 (823)
.+...|+.||+|.... |++|+||||+|++|+|+||||+|+...++|.+.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~-------~g~~Yky 91 (639)
T PRK14706 19 DLVRPDHLLGAHPATEGGVEGVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGAR-------PGQRYKF 91 (639)
T ss_pred cccchhHhcCccCccCCCcccEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCC-------CCCEEEE
Confidence 4567899999998653 7999999999999999999999998889999989999999999754 4779999
Q ss_pred EEeCCCCc-ccccCccceeeccCCCCCCCCcEEeCCCccccccccCCCC------CCCCCceEEEeecCCCCCC--CCCC
Q 003390 250 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP------KKPKSLRIYEAHVGMSSTE--PIIN 320 (823)
Q Consensus 250 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~IYE~hv~~f~~~--~~~G 320 (823)
+|+++.|. ..+.|||++++...+.. .++++++ .|.|++..+ ...++++|||+|||+|+.. +..|
T Consensus 92 ~I~~~~g~~~~~~DPYa~~~~~~~~~---~svv~~~----~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ 164 (639)
T PRK14706 92 RVTGAAGQTVDKMDPYGSFFEVRPNT---ASIIWED----RFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFL 164 (639)
T ss_pred EEECCCCCEEeccCcceEEEecCCCC---ceEECCC----CCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCcc
Confidence 99987654 47899999998877654 6888876 377775432 2235799999999999753 3468
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
+|++++++.++|||+|||||||||||++++..++|||++++||+|+++|||++|||+||++||++||+||||+|+||++.
T Consensus 165 ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 165 NYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 99999964459999999999999999999998899999999999999999999999999999999999999999999998
Q ss_pred CccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCcccccc
Q 003390 401 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 480 (823)
Q Consensus 401 ~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 480 (823)
+. .++..|||+...+|.....+.+..|++..||+++++||+||+++++||++||||||||||++++|+|.|++... |
T Consensus 245 ~~-~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~- 321 (639)
T PRK14706 245 DE-SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-W- 321 (639)
T ss_pred ch-hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-c-
Confidence 75 57788998764434444457788899989999999999999999999999999999999999999998877642 3
Q ss_pred CCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhccchh
Q 003390 481 GNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW 560 (823)
Q Consensus 481 ~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~ 560 (823)
..+++|++.|.+++.||+++++.+++.+|++++|||+++.+|.++.+... |+|||++|+|+|+++++++++.. ..|
T Consensus 322 --~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~-G~gFD~~w~~~w~~~~l~~~~~~-~~~ 397 (639)
T PRK14706 322 --VPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPY-GLGFDYKWAMGWMNDTLAYFEQD-PLW 397 (639)
T ss_pred --cccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCC-CCccccEeccHHHHHHHHHhccC-chh
Confidence 46778999999999999999999999999999999999999999999875 89999999999999999888743 223
Q ss_pred hhhhhHhhhc---cccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCC
Q 003390 561 KMGAIVHTMT---NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGG 637 (823)
Q Consensus 561 ~~~~~~~~l~---~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG 637 (823)
.... ...++ ...+.++.| |++|||+++++++++.. .|+.+. ....+..|++.+++||+||
T Consensus 398 r~~~-~~~lt~~~~y~~~e~~i-l~~SHDev~~~k~sl~~-k~~g~~--------------~~~~a~~r~~~~~~~t~PG 460 (639)
T PRK14706 398 RKYH-HHKLTFFNVYRTSENYV-LAISHDEVVHLKKSMVM-KMPGDW--------------YTQRAQYRAFLAMMWTTPG 460 (639)
T ss_pred hhhc-hhccchhhhhhccccEe-cCCCCccccCCccchHh-HcCCCH--------------HHHHHHHHHHHHHHHhCCC
Confidence 2211 11111 123444544 88999999998877542 122211 1334667888899999999
Q ss_pred cceEeecCcccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCC--
Q 003390 638 EAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT-- 714 (823)
Q Consensus 638 ~p~l~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~-- 714 (823)
.|+| |||+|||+. +|. ++++++|...+...++.|++|+|+||+||+++++|.
T Consensus 461 ~pLi-FmG~EfG~~~ew~------------------------~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~g 515 (639)
T PRK14706 461 KKLL-FMGQEFAQGTEWN------------------------HDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRG 515 (639)
T ss_pred CcEE-EeccccCCCCCCC------------------------cccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhC
Confidence 9766 999999984 331 456788987665566789999999999999999994
Q ss_pred ----CCcEEEEeecCCCcEEEEEcC------cEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCcc
Q 003390 715 ----SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAE 784 (823)
Q Consensus 715 ----~g~~~i~~~~~~~~Vlaf~R~------~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~ 784 (823)
.|++|+.+.+.+++|+||.|. .+|||+||+| ..+.+|+|++|.+|+|+++||||+..|||+++.+. .
T Consensus 516 d~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~-~~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~n~--~ 592 (639)
T PRK14706 516 DKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP-VYREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQQP--D 592 (639)
T ss_pred CCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC-CCcCCeEECCCCCCeEEEEEcCCccccCCCCCCCC--c
Confidence 568889888888899999993 2999999997 77899999999999999999999999999998764 3
Q ss_pred ccccccccCCCCeEEEEEEcCceEEEEEEc
Q 003390 785 YFSLEGWYDDQPHSFLVYAPSRTAVVYALA 814 (823)
Q Consensus 785 ~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~ 814 (823)
+.+...++++++++|.|+|||++++||++.
T Consensus 593 ~~~~~~~~~g~~~si~i~lp~~~~~~~~~~ 622 (639)
T PRK14706 593 LMASQEGWHGQPHSLSLNLPPSSVLILEFV 622 (639)
T ss_pred eeccccccCCCccEEEEEeCCcEEEEEEEC
Confidence 556667899999999999999999999986
No 7
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-100 Score=931.23 Aligned_cols=582 Identities=28% Similarity=0.489 Sum_probs=494.9
Q ss_pred hcCChhhhhcccccCCcEEc--------CCcEEEEEecCCcCeEEEEeecCCCCCccccccc-CCCceEEEEeCCCCCCC
Q 003390 168 YEGGLAAFSRGYEKFGFIRS--------DTGITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNADGS 238 (823)
Q Consensus 168 ~~g~l~~f~~~y~~lG~~~~--------~~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r-~~~GvWei~ip~~~~g~ 238 (823)
+..+.+.+.+.|+.||||.. .+||+|+||||+|++|+|+||||+|+...++|.+ .+.|+|+++||+...
T Consensus 609 ~lf~~g~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~-- 686 (1224)
T PRK14705 609 HLIGEGRHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVA-- 686 (1224)
T ss_pred HHHhCCchhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCC--
Confidence 33344578889999999972 3489999999999999999999999998899987 468999999998765
Q ss_pred CCCCCCCEEEEEEeCCCCc-ccccCccceeeccCCCCCCCCcEEeCCCccccccccCC-----CC---CCCCCceEEEee
Q 003390 239 PPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP-----QP---KKPKSLRIYEAH 309 (823)
Q Consensus 239 ~~~~~g~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~---~~~~~~~IYE~h 309 (823)
|..|||+|.+.+|. ..+.|||++.....+.+ .|+|+|+. |.|++. +. ...++++|||+|
T Consensus 687 -----G~~Yky~i~~~~g~~~~k~DPyA~~~e~~p~~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~~IYEvH 754 (1224)
T PRK14705 687 -----GACYKFEILTKAGQWVEKADPLAFGTEVPPLT---ASRVVEAS----YAFKDAEWMSARAERDPHNSPMSVYEVH 754 (1224)
T ss_pred -----CCEEEEEEEcCCCcEEecCCccccccccCCCC---CeEEeCCC----CCcCChhhhhccccCCCCcCCcEEEEEE
Confidence 66999999987665 46789999988776654 58999873 666543 11 123689999999
Q ss_pred cCCCCCCCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 003390 310 VGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389 (823)
Q Consensus 310 v~~f~~~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~V 389 (823)
||+|+.. ++|++++++.|||||+|||||||||||+|+|..+||||++++||+|+++|||++|||+||++||++||+|
T Consensus 755 vgsf~~~---~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V 831 (1224)
T PRK14705 755 LGSWRLG---LGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV 831 (1224)
T ss_pred ecccccC---CchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE
Confidence 9999873 8999999766899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCccccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccc
Q 003390 390 LMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 468 (823)
Q Consensus 390 IlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 468 (823)
|||+|+||++.+. +++..|+|+. .|++.++ .+.+..|++..|||++++||+||+++++||++||||||||||+|++|
T Consensus 832 ILD~V~nH~~~d~-~~l~~fdg~~-~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~m 909 (1224)
T PRK14705 832 LLDWVPAHFPKDS-WALAQFDGQP-LYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASM 909 (1224)
T ss_pred EEEeccccCCcch-hhhhhcCCCc-ccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhh
Confidence 9999999999875 6788899874 4555554 37788999999999999999999999999999999999999999999
Q ss_pred cccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccchhhhHHHHHH
Q 003390 469 MYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADK 548 (823)
Q Consensus 469 ~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~ 548 (823)
+|.|++...+.+ ..+.+|+++|.++++||+++++.|++.+|++++|||+++.+|.+++|...||+||||+|+|+|+++
T Consensus 910 ly~Dysr~~g~w--~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd 987 (1224)
T PRK14705 910 LYLDYSREEGQW--RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHD 987 (1224)
T ss_pred hhcccccccccc--cccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHH
Confidence 999887655322 246789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--cchhhhhhhHhhhccccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHH
Q 003390 549 WIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHK 626 (823)
Q Consensus 549 ~~~~l~~~--~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k 626 (823)
++++++.. ...|....+...+.. .+.++.+ +..|||++..|++++. ..|+++++. ..+.+|
T Consensus 988 ~l~Y~~~dp~~r~~~~~~ltf~~~y-a~~e~fv-l~~SHDevvhgk~sl~-~km~Gd~~~--------------k~a~lR 1050 (1224)
T PRK14705 988 SLKYASEDPINRKWHHGTITFSLVY-AFTENFL-LPISHDEVVHGKGSML-RKMPGDRWQ--------------QLANLR 1050 (1224)
T ss_pred HHHHhhhCcchhhcccchHHHHHHH-HhhcCEe-cccccccccccchhHH-HhCCCcHHH--------------HHHHHH
Confidence 99998863 245666666665553 3455544 6789999988877653 334444333 345567
Q ss_pred HHHHHHHhCCCcceEeecCcccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHH
Q 003390 627 MIRLVTMGLGGEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQH 705 (823)
Q Consensus 627 ~a~~l~ltlpG~p~l~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~ 705 (823)
++.+++|++||+| |+|||+|||+. +|. ...+++|...++..++.+..|+|+||+
T Consensus 1051 ~~~a~~~~~PGk~-LlFMG~Efgq~~ew~------------------------~~~~LdW~ll~~~~h~~~~~~~rdLn~ 1105 (1224)
T PRK14705 1051 AFLAYQWAHPGKQ-LIFMGTEFGQEAEWS------------------------EQHGLDWFLADIPAHRGIQLLTKDLNE 1105 (1224)
T ss_pred HHHHHHHhcCCcC-EEECccccCCCCCcc------------------------ccccCCCcccCChhhHHHHHHHHHHHH
Confidence 8889999999996 55999999995 663 124689998877788999999999999
Q ss_pred HHHHhcCCC------CCcEEEEeecCCCcEEEEEc-----CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcC
Q 003390 706 LEEKYGFMT------SEHQYVSRKDEGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFG 774 (823)
Q Consensus 706 LRk~~~~l~------~g~~~i~~~~~~~~Vlaf~R-----~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~g 774 (823)
||+++|+|. .|++|+.+.+.+++|++|.| +.+|||+||+| ..+.+|+|++|.+|.|+++||||+..||
T Consensus 1106 ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp-~~~~~y~igvp~~G~y~eilnsd~~~yg 1184 (1224)
T PRK14705 1106 LYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG-GPHKGYTLGVPAAGAWTEVLNTDHETYG 1184 (1224)
T ss_pred HHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC-CCccCceECCCCCCeEEEEEeCchhhcC
Confidence 999999884 46889988888899999999 24999999996 7888999999999999999999999999
Q ss_pred CccccCCCccccccccccCCCCeEEEEEEcCceEEEEEEc
Q 003390 775 GYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 814 (823)
Q Consensus 775 G~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~ 814 (823)
|++..+.. .+.+...++++++++|+|+|||++++||++.
T Consensus 1185 Gsg~~n~~-~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1185 GSGVLNPG-SLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred CCCcCCCC-ceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence 99987644 3455667899999999999999999999975
No 8
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.4e-94 Score=851.43 Aligned_cols=582 Identities=29% Similarity=0.533 Sum_probs=473.4
Q ss_pred hhhcccccCCcEEcCC----cEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEE
Q 003390 174 AFSRGYEKFGFIRSDT----GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKI 249 (823)
Q Consensus 174 ~f~~~y~~lG~~~~~~----gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~ 249 (823)
++.+.|+.||+|.+.. ||+||+|||+|++|+|+||||+|++..++|++.+.|+|+++||+.. +|..|+|
T Consensus 19 ~~~~~~~~lGah~~~~~~~~gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~-------~g~~Y~y 91 (633)
T PRK12313 19 EHFRLYEYLGAHLEEVDGEKGTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAK-------EGQLYKY 91 (633)
T ss_pred CcccchhcCCcEEeccCCcccEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCC-------CCCEEEE
Confidence 4567799999999877 8999999999999999999999998889999989999999999654 4779999
Q ss_pred EEeCCCCc-ccccCccceeeccCCCCCCCCcEEeCCCccccccccCCCC--------CCCCCceEEEeecCCCCCC--CC
Q 003390 250 HMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE--PI 318 (823)
Q Consensus 250 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~IYE~hv~~f~~~--~~ 318 (823)
++...+|. .++.|||++.....+.. .++++|++ .|.|++... ...++++|||+|||+|+.+ ++
T Consensus 92 ~v~~~~g~~~~~~DPya~~~~~~~~~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~ 165 (633)
T PRK12313 92 HISRQDGYQVEKIDPFAFYFEARPGT---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGR 165 (633)
T ss_pred EEECCCCeEEecCCCceEEEecCCCC---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCC
Confidence 99766564 47899999988766544 68999984 577776431 1226799999999999764 56
Q ss_pred CCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 319 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 319 ~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
.|||++++++.|||||+||||+||||||++++...+|||++++||+|+|+|||++|||+||++||++||+||||+|+||+
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~ 245 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHF 245 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 79999999544699999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCcccc
Q 003390 399 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVA 478 (823)
Q Consensus 399 ~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~ 478 (823)
+.++ .++..|+++...++.....+++..|+..+||++||+||++|+++++||++||||||||||+|++|++.+++....
T Consensus 246 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~ 324 (633)
T PRK12313 246 PKDD-DGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGE 324 (633)
T ss_pred CCCc-ccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccC
Confidence 9875 456678776432233323455667989999999999999999999999999999999999999998877762222
Q ss_pred ccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhcc-
Q 003390 479 FTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD- 557 (823)
Q Consensus 479 f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~- 557 (823)
|.+ +.+++..+.++++||+++++.+++.+|++++|||+++.++.++.+...+|+|||+++++++++.++.+++...
T Consensus 325 ~~~---~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~ 401 (633)
T PRK12313 325 WTP---NKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPI 401 (633)
T ss_pred cCC---cccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCcc
Confidence 332 2345566778899999999999999999999999999999999999999999999999999998888886431
Q ss_pred -chhhhhhhHhhhccccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCC
Q 003390 558 -EDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG 636 (823)
Q Consensus 558 -~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlp 636 (823)
..+....+...+. ..+.++. ++++|||+++.|++++...+ .++++ ...+..|++.+++||+|
T Consensus 402 ~~~~~~~~~~~~~~-~~~~e~~-~l~~sHD~~~~g~~~~~~~~-~g~~~--------------~~~~~~r~~~~~~~t~p 464 (633)
T PRK12313 402 YRKYHHNLLTFSFM-YAFSENF-VLPFSHDEVVHGKKSLMHKM-PGDRW--------------QQFANLRLLYTYMITHP 464 (633)
T ss_pred ccccccccchHHHh-hhhhccc-ccCCCCcccccCCccHHHhc-CCCHH--------------HHHHHHHHHHHHHHhCC
Confidence 1222222222222 1223333 47789999988887765432 22211 23456788889999999
Q ss_pred CcceEeecCcccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCC-
Q 003390 637 GEAYLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT- 714 (823)
Q Consensus 637 G~p~l~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~- 714 (823)
|+|+| |||+|+|+. +|. .+++++|...+...++.|++|+|+||+||+++|+|+
T Consensus 465 G~Pli-f~G~E~g~~~~~~------------------------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~ 519 (633)
T PRK12313 465 GKKLL-FMGSEFGQFLEWK------------------------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWE 519 (633)
T ss_pred CCcEe-ecccccccCccCC------------------------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhc
Confidence 99766 999999995 331 125788987665567899999999999999999996
Q ss_pred -----CCcEEEEeecCCCcEEEEEcCc------EEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCc
Q 003390 715 -----SEHQYVSRKDEGDRVIVFERGN------LVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNA 783 (823)
Q Consensus 715 -----~g~~~i~~~~~~~~Vlaf~R~~------llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~ 783 (823)
.++.++...+.+++|+||.|.. ++||+||++ .+..+|+|++|.+|+|+++||||+..|||.++.+..
T Consensus 520 ~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~-~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~~~~~- 597 (633)
T PRK12313 520 LDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTP-VEREDYRIGVPVAGIYEEILNTDSEEFGGSGKGNNG- 597 (633)
T ss_pred ccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCC-CcccceeECCCCCCeEEEEEcCCchhcCCCCcCCCC-
Confidence 3467776655567899999943 999999995 567789999998999999999999999999976533
Q ss_pred cccccccccCCCCeEEEEEEcCceEEEEEEccC
Q 003390 784 EYFSLEGWYDDQPHSFLVYAPSRTAVVYALADE 816 (823)
Q Consensus 784 ~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~~~ 816 (823)
.+.+....++++++++.|+|||++++||++.+.
T Consensus 598 ~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~~ 630 (633)
T PRK12313 598 TVKAQEGPWHGRPQSLTLTLPPLGALVLKPKRR 630 (633)
T ss_pred ceeecccccCCCCCEEEEEeCCCEEEEEEEccc
Confidence 355556678999999999999999999999754
No 9
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5.9e-94 Score=860.35 Aligned_cols=610 Identities=27% Similarity=0.489 Sum_probs=490.3
Q ss_pred CCCcceecCCCCcchHHHHHHHHHHHHHHHHHHHhhcCChhhhhcccccCCcEEcC----CcEEEEEecCCcCeEEEEee
Q 003390 133 AGQNIYEIDPNLLGHRQHLDYRYGRYKQMCEDIDKYEGGLAAFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGD 208 (823)
Q Consensus 133 ~~~~~~~~dp~l~~~~~~l~~r~~~~~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~L~gd 208 (823)
+|..+.+.|||-.+. .+.. ..+..+ .+| .+...|+.||+|... +||+||||||+|++|+|+||
T Consensus 84 ~g~~~~k~DPyaf~~--~~~~------~~~~~~--~~g---~~~~~~~~LGah~~~~~~~~gv~FrvwAP~A~~V~l~gd 150 (726)
T PRK05402 84 GGGEQLIDDPYRFGP--LLGE------LDLYLF--GEG---THLRLYETLGAHPVTVDGVSGVRFAVWAPNARRVSVVGD 150 (726)
T ss_pred CCceeEeccccccCC--CCCH------HHHHHH--hCC---ccchhhhccccEEeccCCCCcEEEEEECCCCCEEEEEEE
Confidence 555678899998754 1110 001111 233 678889999999875 78999999999999999999
Q ss_pred cCCCCCcccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-ccccCccceeeccCCCCCCCCcEEeCCCc
Q 003390 209 FNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE 286 (823)
Q Consensus 209 fN~w~~~~~~m~r~-~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 286 (823)
||+|+...++|++. +.|+|+++||+.. +|..|+|++...+|. .+..|||++.....+.. .++++|++
T Consensus 151 fn~w~~~~~~m~~~~~~Gvw~~~i~~~~-------~g~~Y~y~v~~~~g~~~~~~DPYa~~~~~~~~~---~s~v~d~~- 219 (726)
T PRK05402 151 FNGWDGRRHPMRLRGESGVWELFIPGLG-------EGELYKFEILTADGELLLKADPYAFAAEVRPAT---ASIVADLS- 219 (726)
T ss_pred cCCCCCccccceEcCCCCEEEEEeCCCC-------CCCEEEEEEeCCCCcEeecCCCceEEEecCCCC---cEEEeCCc-
Confidence 99999888899998 8899999999753 477999999877654 46899999998776654 58999974
Q ss_pred cccccccCCCC--------CCCCCceEEEeecCCCCCC---CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCC
Q 003390 287 EEKYVFQHPQP--------KKPKSLRIYEAHVGMSSTE---PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF 355 (823)
Q Consensus 287 ~~~~~~~~~~~--------~~~~~~~IYE~hv~~f~~~---~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~ 355 (823)
.|.|++... ...++++|||+|||+|+.+ ++.|+|++++++.|||||+||||+||||||++++...+|
T Consensus 220 --~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~ 297 (726)
T PRK05402 220 --QYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSW 297 (726)
T ss_pred --cCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC
Confidence 577765431 1346799999999999853 567999999953359999999999999999999988899
Q ss_pred CCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCC-CCCcccCCCCCCC
Q 003390 356 GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFN 434 (823)
Q Consensus 356 GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln 434 (823)
||++++||+|+|+|||++|||+||++||++||+||||+|+||++.++ .++..|+++. .|++.+. .+.+..|++..||
T Consensus 298 GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~n 375 (726)
T PRK05402 298 GYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDA-HGLARFDGTA-LYEHADPREGEHPDWGTLIFN 375 (726)
T ss_pred CCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc-cchhccCCCc-ceeccCCcCCccCCCCCcccc
Confidence 99999999999999999999999999999999999999999998875 4677788764 4444333 3567789989999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEE
Q 003390 435 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 514 (823)
Q Consensus 435 ~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~ 514 (823)
+++|+||++|+++++||++||||||||||++.+|++.+++...+++ ..+.+++..+.++++||+++++.+++.+|+++
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~ 453 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEW--IPNIYGGRENLEAIDFLRELNAVVHEEFPGAL 453 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccc--ccccccCcCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 9999999999999999999999999999999999988777654322 23455667788899999999999999999999
Q ss_pred EEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhc--cchhhhhhhHhhhccccccccceecccCcCcccccc
Q 003390 515 SIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKR--DEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGD 592 (823)
Q Consensus 515 ~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~--~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~ 592 (823)
+|||+++.++.++.+...+|+|||+.|+++++++++++++.. ...+....+...+.. .+.++. ++++|||+++.++
T Consensus 454 liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~-~l~~sHD~~~~g~ 531 (726)
T PRK05402 454 TIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLY-AYSENF-VLPLSHDEVVHGK 531 (726)
T ss_pred EEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhH-hhhccc-cCCCCCceeeeCc
Confidence 999999999999999888999999999999998888887642 111222222211111 223333 4778999999888
Q ss_pred cchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCC
Q 003390 593 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 672 (823)
Q Consensus 593 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn 672 (823)
+++...+ ..++ ....+..|++.+++||+||+|+| |||||+|+.+..+
T Consensus 532 ~~l~~~~-~g~~--------------~~~~~~lrl~~~~~~t~pG~Pli-f~G~E~g~~~~~~----------------- 578 (726)
T PRK05402 532 GSLLGKM-PGDD--------------WQKFANLRAYYGYMWAHPGKKLL-FMGGEFGQGREWN----------------- 578 (726)
T ss_pred ccHHhhC-CCCH--------------HHHHHHHHHHHHHHHHCCCcCEe-eCchhcCCCCCCC-----------------
Confidence 7764322 2111 12356778889999999999766 9999999975211
Q ss_pred CCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCC------CcEEEEeecCCCcEEEEEcC------cEEEE
Q 003390 673 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS------EHQYVSRKDEGDRVIVFERG------NLVFV 740 (823)
Q Consensus 673 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~------g~~~i~~~~~~~~Vlaf~R~------~llvv 740 (823)
.+++++|...+...++.+++|+|+|++||+++++|.. ++.|+...+.+++|+||.|. .++||
T Consensus 579 ------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv 652 (726)
T PRK05402 579 ------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVV 652 (726)
T ss_pred ------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEE
Confidence 2367899876555678999999999999999999963 46677666667789999992 49999
Q ss_pred EECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEEEcc
Q 003390 741 FNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALAD 815 (823)
Q Consensus 741 ~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~~ 815 (823)
+||++ ....+|+|++|.+|+|+++||||+..|||.+.++.. .+.+...+++++++++.|+|||++++||++..
T Consensus 653 ~N~~~-~~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~~~~~-~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~~ 725 (726)
T PRK05402 653 CNFTP-VPRHDYRLGVPQAGRWREVLNTDAEHYGGSNVGNGG-GVHAEEVPWHGRPHSLSLTLPPLATLILKPEA 725 (726)
T ss_pred EeCCC-CcccceEECCCCCCeEEEEEcCcchhhCCCCCCCCC-ceeccccccCCCCCEEEEEeCCCEEEEEEEcC
Confidence 99995 566789999998999999999999999999977644 45666678999999999999999999999853
No 10
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=2.6e-93 Score=840.22 Aligned_cols=578 Identities=29% Similarity=0.522 Sum_probs=465.1
Q ss_pred hhhcccccCCcEEcC----CcEEEEEecCCcCeEEEEeecCCCCCcccccccC-CCceEEEEeCCCCCCCCCCCCCCEEE
Q 003390 174 AFSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVK 248 (823)
Q Consensus 174 ~f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~-~~GvWei~ip~~~~g~~~~~~g~~y~ 248 (823)
++...|+.||+|... +|++||||||+|++|+|++|||+|+...++|++. +.|+|+++||+.. +|..|+
T Consensus 9 ~~~~~~~~LGah~~~~~~~~g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~-------~g~~Y~ 81 (613)
T TIGR01515 9 SHFRSYELLGSHYMELDGVSGTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIG-------EGELYK 81 (613)
T ss_pred ccCChHHhcCceEeccCCcCcEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCC-------CCCEEE
Confidence 566779999999987 6899999999999999999999998888899887 4899999999754 477999
Q ss_pred EEEeCCCCc-ccccCccceeeccCCCCCCCCcEEeCCCc--cccccccCCCC-C--CCCCceEEEeecCCCCCCCCCCCH
Q 003390 249 IHMDTPSGI-KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHPQP-K--KPKSLRIYEAHVGMSSTEPIINTY 322 (823)
Q Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~-~--~~~~~~IYE~hv~~f~~~~~~G~~ 322 (823)
|+|...+|. ....|||++.+...+.. .++++|++. +.+..|+..++ . ..++++|||+|||+|+.+ |||
T Consensus 82 y~v~~~~g~~~~~~DPYA~~~~~~~~~---~s~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~---g~~ 155 (613)
T TIGR01515 82 YEIVTNNGEIRLKADPYAFYAEVRPNT---ASLVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG---LSY 155 (613)
T ss_pred EEEECCCCcEEEeCCCCEeeeccCCCC---cEEEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCC---CCH
Confidence 999876554 46899999987765543 588998752 12223443322 1 235789999999999764 999
Q ss_pred HhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCc
Q 003390 323 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 402 (823)
Q Consensus 323 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~ 402 (823)
++|+++.|||||+||||+||||||++++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.+.
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 99995335999999999999999999998889999999999999999999999999999999999999999999999875
Q ss_pred cccccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccC
Q 003390 403 LDGLNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 481 (823)
Q Consensus 403 ~~~~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~ 481 (823)
..+..|++.. .|++... .+.++.|++++||+++|+||++|+++++||++||||||||||+|++|++.++|...+.+.
T Consensus 236 -~~~~~~~~~~-~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~ 313 (613)
T TIGR01515 236 -HGLAEFDGTP-LYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWS 313 (613)
T ss_pred -chhhccCCCc-ceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccc
Confidence 4566777653 4544433 355678999999999999999999999999999999999999999999887776543211
Q ss_pred CcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhcc--ch
Q 003390 482 NYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--ED 559 (823)
Q Consensus 482 ~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~--~~ 559 (823)
.+.+++..+.++++||+++++.|++.+|++++|||+++.++.++.+...+|+|||++|++.|++.++.+++... ..
T Consensus 314 --~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~ 391 (613)
T TIGR01515 314 --PNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQ 391 (613)
T ss_pred --ccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHh
Confidence 12345566788999999999999999999999999999999999999999999999999999988888875321 11
Q ss_pred hhhhhhHhhhccccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcc
Q 003390 560 WKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEA 639 (823)
Q Consensus 560 ~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p 639 (823)
+....+...+. ..+.++.+ +++|||+++.|++++... |.+++ ....+..|++.+++||+||+|
T Consensus 392 ~~~~~~~~~~~-~~~~e~~~-~~~sHD~~~~g~~~i~~~---------~~g~~------~~~~~~~r~~~~~~~t~pG~p 454 (613)
T TIGR01515 392 YHHQLITFSML-YAFSENFV-LPLSHDEVVHGKKSLLNK---------MPGDY------WQKFANYRALLGYMWAHPGKK 454 (613)
T ss_pred hccccccHHHH-HHhhhccc-cCCCCCCcccCcccHHHh---------CCCch------HHHHHHHHHHHHHHHhCCCCC
Confidence 11111111111 12233333 789999998888776532 22211 122457788899999999997
Q ss_pred eEeecCcccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCC----
Q 003390 640 YLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMT---- 714 (823)
Q Consensus 640 ~l~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~---- 714 (823)
.| |||+|+|+. +|.+ +++++|...+...++.+++|+|+|++||+++|+|.
T Consensus 455 li-f~G~E~g~~~~~~~------------------------~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~ 509 (613)
T TIGR01515 455 LL-FMGSEFAQGSEWND------------------------TEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDF 509 (613)
T ss_pred EE-EcchhcCcCCCCCC------------------------CccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCC
Confidence 66 999999994 4421 25788986666678899999999999999999985
Q ss_pred --CCcEEEEeecCCCcEEEEEcC------cEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCcccc
Q 003390 715 --SEHQYVSRKDEGDRVIVFERG------NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYF 786 (823)
Q Consensus 715 --~g~~~i~~~~~~~~Vlaf~R~------~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~ 786 (823)
.+++|+...+.+++|+||.|. .++||+||++ .+..+|+|++|.+|+|+++|||++..|||.++.+... ..
T Consensus 510 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~-~~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~~~~~-~~ 587 (613)
T TIGR01515 510 DPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTP-VVRHQYRVGVPQPGQYREVLNSDSETYGGSGQGNKGP-LS 587 (613)
T ss_pred CCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCC-CCccceEeCCCCCCeEEEEEeCChhhcCCCCcCCCCc-ee
Confidence 356778766667789999992 4999999995 6778999999888999999999999999999877543 45
Q ss_pred ccccccCCCCeEEEEEEcCceEEEEE
Q 003390 787 SLEGWYDDQPHSFLVYAPSRTAVVYA 812 (823)
Q Consensus 787 ~~~~~~~~~~~~i~l~lp~~s~~V~~ 812 (823)
+....+++++++|.|+|||++++|||
T Consensus 588 ~~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 588 AEEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred ccccccCCCCCEEEEEeCCcEEEEeC
Confidence 55567899999999999999999985
No 11
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-92 Score=800.99 Aligned_cols=581 Identities=30% Similarity=0.490 Sum_probs=479.7
Q ss_pred hhhhcccccCCcEEcCC---cEEEEEecCCcCeEEEEeecCCCCCcccccccC-CCceEEEEeCCCCCCCCCCCCCCEEE
Q 003390 173 AAFSRGYEKFGFIRSDT---GITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVK 248 (823)
Q Consensus 173 ~~f~~~y~~lG~~~~~~---gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~-~~GvWei~ip~~~~g~~~~~~g~~y~ 248 (823)
....+.|+.||||.... |++|+||||+|+.|+|+||||+|+...++|... ++|+|+++||+... |.+||
T Consensus 17 ~~~~~~~~~~GA~~~~~g~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~-------G~~Yk 89 (628)
T COG0296 17 GTHLRLYEKLGAHPIENGVSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPP-------GTRYK 89 (628)
T ss_pred ccchhhHhhhCcccccCCCCceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCC-------CCeEE
Confidence 34566789999998643 599999999999999999999999988888744 88999999998655 67999
Q ss_pred EEEeCCCCcc-cccCccceeeccCCCCCCCCcEEeCCCccccccccCC----CC--CCCCCceEEEeecCCCCCCCCCCC
Q 003390 249 IHMDTPSGIK-DSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHP----QP--KKPKSLRIYEAHVGMSSTEPIINT 321 (823)
Q Consensus 249 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~--~~~~~~~IYE~hv~~f~~~~~~G~ 321 (823)
|++.+.+|.. ...|||+++....+.+ .|+|++++ .|.|++. .. +..++++|||+|||+|+.+ ..-+
T Consensus 90 y~l~~~~g~~~~~~DP~a~~~~~~p~~---aS~v~~~~---~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~~~~ 162 (628)
T COG0296 90 YELIDPSGQLRLKADPYARRQEVGPHT---ASQVVDLP---DYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-RFLG 162 (628)
T ss_pred EEEeCCCCceeeccCchhhccCCCCCC---cceecCCC---CcccccccccccccCCCCCCceEEEEEeeeccCC-CCcC
Confidence 9999998853 5678999988777776 58999875 2777632 22 2347999999999999985 5545
Q ss_pred HHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 322 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
+.++++++|||||+||||||+||||.|||.+.|||||++.||||++|||||+|||+|||+||++||.||||+|+||++.+
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d 242 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPD 242 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCC
Confidence 55566689999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccC
Q 003390 402 VLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTG 481 (823)
Q Consensus 402 ~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~ 481 (823)
. .++..|+|+.-+.+..-.++.++.|++..+|++++|||+||+++++||+++|||||||+|||.+|++.|+.+... .
T Consensus 243 ~-~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~-~- 319 (628)
T COG0296 243 G-NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEG-E- 319 (628)
T ss_pred c-chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhh-c-
Confidence 5 789999998754444445688999999999999999999999999999999999999999999999998655331 0
Q ss_pred CcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhcc--ch
Q 003390 482 NYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRD--ED 559 (823)
Q Consensus 482 ~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~--~~ 559 (823)
...+.+|+.++..+++|++.+++.|+...|++++|+|+|++++..+.+...+|+||+|+++|+++.+...++.... ..
T Consensus 320 ~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~ 399 (628)
T COG0296 320 WVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRK 399 (628)
T ss_pred ccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccc
Confidence 1123457788999999999999999999999999999999999999999999999999999999998888887543 34
Q ss_pred hhhhhhHhhhccccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcc
Q 003390 560 WKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEA 639 (823)
Q Consensus 560 ~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p 639 (823)
+..+.+...+. . .....+.|+.|||++.+|++++..++. ++.. ...+..|.+.++++++||+|
T Consensus 400 ~~h~~~tf~~~-y-~~se~~~l~~sHDevvhGk~sl~~rm~---------g~~~------~~~a~lr~~~a~~~~~Pgk~ 462 (628)
T COG0296 400 YHHGELTFGLL-Y-AFSENVVLPLSHDEVVHGKRSLGERMP---------GDAW------QKFANLRALAAYMWLHPGKP 462 (628)
T ss_pred cccCCCccccc-c-ccceeEeccccccceeecccchhccCC---------cchh------hhHHHHHHHHHHHHhCCCce
Confidence 55554444332 1 123456799999999999998764332 2221 34567788899999999996
Q ss_pred eEeecCcccCCC-CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccc----cccchHHHHHHHHHHHHHHHhcCC-
Q 003390 640 YLNFMGNEFGHP-EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD----YLRYRGMQEFDRAMQHLEEKYGFM- 713 (823)
Q Consensus 640 ~l~y~G~E~G~~-~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~----~~~~~~l~~f~r~Li~LRk~~~~l- 713 (823)
|+|||+|||+. +|..+- ..+|...+ ..+++.+..|.+.|+++.+..+.+
T Consensus 463 -LLFMG~Efgq~~e~~~~~------------------------~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~ 517 (628)
T COG0296 463 -LLFMGEEFGQGREWNFFS------------------------SLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLH 517 (628)
T ss_pred -eeecchhhccCCCCcccC------------------------CCChhhhhhccccchHHHHHHHHHhhHHhhccCCccc
Confidence 55999999994 775432 34553332 234789999999999888776544
Q ss_pred -----CCCcEEEEeecCCCcEEEEEc-------CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCC
Q 003390 714 -----TSEHQYVSRKDEGDRVIVFER-------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDH 781 (823)
Q Consensus 714 -----~~g~~~i~~~~~~~~Vlaf~R-------~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~ 781 (823)
.+++.|+...+.+.+|++|.| +.+++|+||++ ..+.+|+++++.+|.|++++|||...|||++..+.
T Consensus 518 ~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~-~~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~~~~ 596 (628)
T COG0296 518 EQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTP-VPRVDYRVGVPVAGRWREVLNTDLAEYGGSGAGNL 596 (628)
T ss_pred hhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCC-CcccccccCCcccccEEEeccchHHHhcCCccccc
Confidence 578899988887778999999 24788888885 78899999999899999999999999999998775
Q ss_pred CccccccccccCCCCeEEEEEEcCceEEEEEE
Q 003390 782 NAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 813 (823)
Q Consensus 782 ~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~ 813 (823)
...+.++...++++..+++++|||.+++||+.
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~~ 628 (628)
T COG0296 597 GLPVSGEDILWHGREWSLSLTLPPLAALVLKL 628 (628)
T ss_pred cceecceeeeccCcceeeEEecCCceeeEeeC
Confidence 55456666667888999999999999999873
No 12
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=5.5e-75 Score=685.15 Aligned_cols=508 Identities=18% Similarity=0.281 Sum_probs=371.1
Q ss_pred cCCcEEcCCcEEEEEecCCcCeEEEEeecCCCCCc----ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003390 181 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN----ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256 (823)
Q Consensus 181 ~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~~~----~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~ 256 (823)
+||+|+..+|++|+||||+|++|+|++ |++|+.. .++|.+.+.|+|+++||+.. +|..|+|+++..+.
T Consensus 11 ~lG~~~~~~~~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~-------~g~~Y~y~v~~~~~ 82 (605)
T TIGR02104 11 ELGAVYTPEKTVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDL-------HGYFYTYQVCINGK 82 (605)
T ss_pred CCccEEECCeeEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCC-------CCCEEEEEEEcCCC
Confidence 899999999999999999999999998 8888543 57899989999999999754 47799999987655
Q ss_pred cccccCccceeeccCCCCCCCCcEEeCCCccccccccCCC---CCCCCCceEEEeecCCCCCCCC-----CCCHHhhHhh
Q 003390 257 IKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQHPQ---PKKPKSLRIYEAHVGMSSTEPI-----INTYANFRDD 328 (823)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~IYE~hv~~f~~~~~-----~G~~~~~~~~ 328 (823)
.....|||++....... +++++|+...+.+.|.... +..+++++|||+|||+|+.+++ .|+|+++++.
T Consensus 83 ~~~~~DPya~~~~~~~~----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~ 158 (605)
T TIGR02104 83 WRETVDPYAKAVTVNGK----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTET 158 (605)
T ss_pred eEEEcCCCcceeccCCC----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeecc
Confidence 55789999987654322 5889998655566776543 3345789999999999986543 5899999842
Q ss_pred ----------hhhhHHHcCCCEEEECCcccCCCC--------CCCCCccccccCcCCCCCC--------HHHHHHHHHHH
Q 003390 329 ----------VLPRIKRLGYNAVQIMAVQEHSYY--------ASFGYHVTNFFAPSSRCGT--------PDDLKSLIDKA 382 (823)
Q Consensus 329 ----------~L~yLk~LGvt~I~L~Pi~e~~~~--------~~~GY~~~~~~a~~~~~Gt--------~edlk~LV~~a 382 (823)
+|||||+||||+||||||++++.. .+|||++++||+|+++||+ ++|||+||++|
T Consensus 159 ~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~ 238 (605)
T TIGR02104 159 GTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQAL 238 (605)
T ss_pred CccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHH
Confidence 499999999999999999998642 3699999999999999997 59999999999
Q ss_pred HHcCCEEEEEecccccCCCccccccCCCCCCCCcccc-CCCCCcc-cC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceE
Q 003390 383 HELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHS-GSRGYHW-MW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDG 459 (823)
Q Consensus 383 H~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~-~~~g~~~-~w-~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDG 459 (823)
|++||+||||+|+||++... ...|++..+.||+. ...+... .+ ...++|+.+|+||++|+++++||++||||||
T Consensus 239 H~~Gi~VilDvV~NH~~~~~---~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDG 315 (605)
T TIGR02104 239 HENGIRVIMDVVYNHTYSRE---ESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDG 315 (605)
T ss_pred HHCCCEEEEEEEcCCccCCC---CCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999998542 23577766666543 3333211 11 1358999999999999999999999999999
Q ss_pred EEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceecccc-------
Q 003390 460 FRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQD------- 532 (823)
Q Consensus 460 fR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~------- 532 (823)
||||++.++ ..+||+++++.+++.+|++++|||.|...+........
T Consensus 316 fR~D~~~~~--------------------------~~~~~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~ 369 (605)
T TIGR02104 316 FRFDLMGIH--------------------------DIETMNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQ 369 (605)
T ss_pred EEEechhcC--------------------------CHHHHHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCC
Confidence 999999765 13589999999999999999999999765433211100
Q ss_pred -CCcc-cchhhhHHHHHHHH-----HHHhhccchhhhhhhHhhhc----------cccccccceecccCcCcccccccch
Q 003390 533 -GGVG-FDYRLQMAIADKWI-----ELLKKRDEDWKMGAIVHTMT----------NRRWLEKCVAYAESHDQALVGDKTI 595 (823)
Q Consensus 533 -gglg-Fd~~~~~~~~d~~~-----~~l~~~~~~~~~~~~~~~l~----------~~~~~~~~v~y~enHD~~r~g~~t~ 595 (823)
.+++ |++.+..++..... .+++... .....+...+. ....+.++|||++|||+.|+.++..
T Consensus 370 ~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~--~~~~~l~~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~ 447 (605)
T TIGR02104 370 MPGIAFFNDEFRDALKGSVFHLKKKGFVSGNP--GTEETVKKGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLS 447 (605)
T ss_pred CCceEEECCcchhhhcCCccccccCceecCCC--CcHHHHHhheeCChhhcccccccCChhheEEEEEecCCCCHHHHHH
Confidence 1111 33333322211000 1111100 01111222221 1123457899999999998865421
Q ss_pred hhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 003390 596 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFS 675 (823)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s 675 (823)
. ..+ ....+...++.|++.+++|++||+|+| |||||+|+... +++++
T Consensus 448 ~---~~~------------~~~~~~~~~r~rla~alllts~GiP~i-y~GdE~g~s~~-----------------g~~n~ 494 (605)
T TIGR02104 448 L---ANP------------DETEEQLKKRQKLATAILLLSQGIPFL-HAGQEFMRTKQ-----------------GDENS 494 (605)
T ss_pred h---hCC------------CCCHHHHHHHHHHHHHHHHHcCCCcee-ecchhhhccCC-----------------CCCCC
Confidence 0 000 011234566789999999999999877 99999999652 33344
Q ss_pred Cc--ccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEE-----EE-eecCCCcEEEEEcC---------cEE
Q 003390 676 YD--KCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQY-----VS-RKDEGDRVIVFERG---------NLV 738 (823)
Q Consensus 676 ~~--~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~-----i~-~~~~~~~Vlaf~R~---------~ll 738 (823)
|. .++++|+|...+ .++.+++|+|+||+|||++|+|+.+... +. ....++.|++|.|. .++
T Consensus 495 y~~~d~~~~ldW~~~~--~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~ll 572 (605)
T TIGR02104 495 YNSPDSINQLDWDRKA--TFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDII 572 (605)
T ss_pred ccCCCcccccCccccc--cchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEE
Confidence 42 457789998643 4678999999999999999999876421 11 12235679999992 489
Q ss_pred EEEECCCCCcccceEEcccCCceEEEEEeCCC
Q 003390 739 FVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDD 770 (823)
Q Consensus 739 vv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~ 770 (823)
||+|++. . .+.+.+|..|.|+.+++|+.
T Consensus 573 Vv~N~s~-~---~~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 573 VIHNANP-E---PVDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred EEEeCCC-C---CeEEECCCCCCEEEEECCCc
Confidence 9999983 2 35666666789999999864
No 13
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=9.5e-72 Score=647.26 Aligned_cols=479 Identities=26% Similarity=0.372 Sum_probs=354.7
Q ss_pred EEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCcccccCccceeecc
Q 003390 191 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQ 270 (823)
Q Consensus 191 v~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 270 (823)
|+|+||||+|++|.|+++ ...++|++.++|+|+++||+... |..|+|+|++ .....|||++....
T Consensus 1 v~FrlwAP~A~~V~L~l~-----~~~~~m~k~~~GvW~~~v~~~~~-------G~~Y~y~v~g---~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN-----GALHAMQRLGDGWFEITVPPVGP-------GDRYGYVLDD---GTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC-----CCEEeCeECCCCEEEEEECCCCC-------CCEEEEEEee---eEEecCcccccccc
Confidence 589999999999999972 23679999999999999997654 6789999975 34678899987533
Q ss_pred CCCCCCCCcEEeCCCccccccccCCCC--CCCCCceEEEeecCCCCCCCCCCCHHhhHhhhhhhHHHcCCCEEEECCccc
Q 003390 271 APGEIPYNGIYYDPPEEEKYVFQHPQP--KKPKSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQE 348 (823)
Q Consensus 271 ~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~IYE~hv~~f~~~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e 348 (823)
... ..++|+|+. .|.|+++.+ ...++++|||+|||+|+. .|||++++ ++|||||+||||+||||||++
T Consensus 66 ~~~---~~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~---~G~~~gi~-~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 66 GVH---GPSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTP---EGTFDAAI-EKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred CCC---CCeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCC---CCCHHHHH-HhhHHHHHcCCCEEEeCcccc
Confidence 222 258999984 488887654 234889999999999986 49999999 699999999999999999999
Q ss_pred CCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccC
Q 003390 349 HSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMW 428 (823)
Q Consensus 349 ~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w 428 (823)
++...+|||++++||+|+++|||++|||+||++||++||+||||+|+||++.++ ..+..|. + ||... ....|
T Consensus 136 ~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~~---~-y~~~~---~~~~w 207 (542)
T TIGR02402 136 FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG-NYLPRYA---P-YFTDR---YSTPW 207 (542)
T ss_pred CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc-ccccccC---c-cccCC---CCCCC
Confidence 997778999999999999999999999999999999999999999999998764 2222332 3 66432 23445
Q ss_pred CCCCCCCCCH---HHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHh
Q 003390 429 DSRLFNYGSW---EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDM 505 (823)
Q Consensus 429 ~~~~ln~~~~---~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~ 505 (823)
+ +.+|+.+| +||++|+++++||++||||||||||++.+|.. .+++.||+++++.
T Consensus 208 g-~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~----------------------~~~~~~l~~~~~~ 264 (542)
T TIGR02402 208 G-AAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIAD----------------------TSAKHILEELARE 264 (542)
T ss_pred C-CccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcc----------------------ccHHHHHHHHHHH
Confidence 4 57999999 99999999999999999999999999987731 2356799999999
Q ss_pred hhccCCC---EEEEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhccchh------hhhhhHhhhcc-----
Q 003390 506 IHGLYPE---AVSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDW------KMGAIVHTMTN----- 571 (823)
Q Consensus 506 v~~~~p~---~~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~------~~~~~~~~l~~----- 571 (823)
+++++|+ +++|||.+...+..+.+...++++||..|+..+.+.+...+......+ ....+...+..
T Consensus 265 ~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~ 344 (542)
T TIGR02402 265 VHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYD 344 (542)
T ss_pred HHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccC
Confidence 9999999 999999998777777777778888988887777666666665322111 11122221110
Q ss_pred ----------c--c----ccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhC
Q 003390 572 ----------R--R----WLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGL 635 (823)
Q Consensus 572 ----------~--~----~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltl 635 (823)
. . -+.++|+|++|||+. |+.++...+. .. .+.++.|++.+++||+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~--gn~~~~~Rl~---------~~--------~~~~~~~la~alllt~ 405 (542)
T TIGR02402 345 GEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQI--GNRALGERLS---------QL--------LSPGSLKLAAALLLLS 405 (542)
T ss_pred ccccccccccCCCCCCCCCHHHEEEEccCcccc--cccchhhhhh---------hc--------CCHHHHHHHHHHHHHc
Confidence 0 0 124679999999973 2222110000 00 0125779999999999
Q ss_pred CCcceEeecCcccCCCCC----CCCCCCCC--CCCCC------------CcCCCCCCCCcccCcccCCCccccccchHHH
Q 003390 636 GGEAYLNFMGNEFGHPEW----IDFPRGDQ--RLPNG------------QFVPGNNFSYDKCRRRFDLGDADYLRYRGMQ 697 (823)
Q Consensus 636 pG~p~l~y~G~E~G~~~~----~d~p~~~~--~~~~~------------~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~ 697 (823)
||+|+| |||||+|+.+- .|++..+. ...+| ...+........++++++|...+...+.+++
T Consensus 406 pGiP~I-y~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~ 484 (542)
T TIGR02402 406 PYTPLL-FMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEETFLRSKLDWAEAESGEHARWL 484 (542)
T ss_pred CCCcee-eccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhhHhhccCCcccccccchHHHH
Confidence 999988 99999999652 12111000 00000 0111222223346788999877655678999
Q ss_pred HHHHHHHHHHHHhcCCCCCc-EEEEe-ecCCCcEEEEEc--CcEEEEEECCC
Q 003390 698 EFDRAMQHLEEKYGFMTSEH-QYVSR-KDEGDRVIVFER--GNLVFVFNFHW 745 (823)
Q Consensus 698 ~f~r~Li~LRk~~~~l~~g~-~~i~~-~~~~~~Vlaf~R--~~llvv~Nf~~ 745 (823)
+|||+||+|||++++|+.+. ..+.. ...++.|+++.. +.++|++|++.
T Consensus 485 ~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~ 536 (542)
T TIGR02402 485 AFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLST 536 (542)
T ss_pred HHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCC
Confidence 99999999999999986542 22222 134577888876 57999999984
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.3e-70 Score=649.76 Aligned_cols=554 Identities=19% Similarity=0.270 Sum_probs=382.4
Q ss_pred ccCCcEEcCCcEEEEEecCCcCeEEEEeecCCCCC---cccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC--
Q 003390 180 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP---NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 254 (823)
Q Consensus 180 ~~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~~---~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~-- 254 (823)
.+||++++++|++|+||||+|++|+|+. |+++.. ..++|++.++|||+++||+... |..|+|+++++
T Consensus 5 ~~LGa~~~~~g~~F~vwap~A~~V~L~l-~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~-------g~~Y~yrv~g~~~ 76 (688)
T TIGR02100 5 FPLGATWDGQGVNFALFSANAEKVELCL-FDAQGEKEEARLPLPERTDDIWHGYLPGAQP-------GQLYGYRVHGPYD 76 (688)
T ss_pred cCCCeEEeCCcEEEEEECCCCCEEEEEE-EcCCCCceeeEEecccCCCCEEEEEECCCCC-------CCEEEEEEeeeeC
Confidence 4799999999999999999999999986 555543 2468999899999999997654 67899999863
Q ss_pred --CC-----cccccCccceeeccCCC-------------------------CCCCCcEEeCCCccccccccCC--CCC-C
Q 003390 255 --SG-----IKDSIPAWIKFSVQAPG-------------------------EIPYNGIYYDPPEEEKYVFQHP--QPK-K 299 (823)
Q Consensus 255 --~~-----~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~d~~~~~~~~~~~~--~~~-~ 299 (823)
.| ....+||||+....... ....+++|+|+ .|.|++. .|. .
T Consensus 77 ~~~g~~f~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~----~~~w~~~~~~p~~~ 152 (688)
T TIGR02100 77 PENGHRFNPNKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDP----DFDWGGDEQRPRTP 152 (688)
T ss_pred CCCCcccCcCceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCC----CCCCCCcccCCCCC
Confidence 22 23578999987754321 00126788876 3788754 333 3
Q ss_pred CCCceEEEeecCCCCCC------CCCCCHHhhHhh-hhhhHHHcCCCEEEECCcccCCCC---------CCCCCcccccc
Q 003390 300 PKSLRIYEAHVGMSSTE------PIINTYANFRDD-VLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFF 363 (823)
Q Consensus 300 ~~~~~IYE~hv~~f~~~------~~~G~~~~~~~~-~L~yLk~LGvt~I~L~Pi~e~~~~---------~~~GY~~~~~~ 363 (823)
.++++|||+||++|+.. ...|||+||++. +|||||+||||+||||||++++.. .+|||++.|||
T Consensus 153 ~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~ 232 (688)
T TIGR02100 153 WEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFF 232 (688)
T ss_pred ccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCccccc
Confidence 47899999999999863 235999999952 599999999999999999998642 36999999999
Q ss_pred CcCCCC---CCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccc-cCCCCCCC-CccccCCC--CCc--ccCCCCCCC
Q 003390 364 APSSRC---GTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSR--GYH--WMWDSRLFN 434 (823)
Q Consensus 364 a~~~~~---Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~fdg~~~-~yf~~~~~--g~~--~~w~~~~ln 434 (823)
+|+++| |+++|||+||++||++||+||||+|+||++..+..+. ..|.+..+ .||+.... +.. +....+++|
T Consensus 233 a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln 312 (688)
T TIGR02100 233 APEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLN 312 (688)
T ss_pred ccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCcccccc
Confidence 999999 5799999999999999999999999999998753322 23444333 34443322 211 112237899
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEE
Q 003390 435 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAV 514 (823)
Q Consensus 435 ~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~ 514 (823)
+++|+||++|+++++||++||||||||||++..|.....+. + ....++++++.. ...|+++
T Consensus 313 ~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~----------------~-~~~~~~~~i~~d--~~~~~~~ 373 (688)
T TIGR02100 313 LSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGF----------------D-MLSGFFTAIRQD--PVLAQVK 373 (688)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCC----------------c-ccHHHHHHHHhC--cccCCeE
Confidence 99999999999999999999999999999999885431111 0 123467777653 4678999
Q ss_pred EEEecCCCCCCceeccccCCcccc---hhhhHHHHHHHHHHHhhccchhhhhhhHhhhcc--------ccccccceeccc
Q 003390 515 SIGEDVSGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAE 583 (823)
Q Consensus 515 ~igE~~~~~~~~~~~~~~gglgFd---~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~~--------~~~~~~~v~y~e 583 (823)
+|||.|...+. .+..+ .|+ ..+|..+.+.++.++++... ....+...+.. .+.+.++|||++
T Consensus 374 ligE~W~~~~~---~~~~~--~~~~~~~~~Nd~frd~ir~f~~g~~~--~~~~~~~~l~gs~~~~~~~~~~~~~~iNyv~ 446 (688)
T TIGR02100 374 LIAEPWDIGPG---GYQVG--NFPPGWAEWNDRYRDDMRRFWRGDAG--MIGELANRLTGSSDLFEHNGRRPWASINFVT 446 (688)
T ss_pred EEEeeecCCCC---ccccc--CCCCceEEecHHHHHHHHHHHcCCCC--cHHHHHHHHhCCHhhccccCCCcCEEEEEEe
Confidence 99999964322 11111 233 33556666666777765321 12233333322 123567899999
Q ss_pred CcCcccccccchhhhc---cChh---------HHHhhh--cCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccC
Q 003390 584 SHDQALVGDKTIAFWL---MDKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFG 649 (823)
Q Consensus 584 nHD~~r~g~~t~~~~~---~~~~---------~~~~~~--~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G 649 (823)
|||+.++.++...... .+++ .-+... +......+.+...+++|++.+++|++||+|+| |||+|||
T Consensus 447 ~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i-~~GdE~g 525 (688)
T TIGR02100 447 AHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML-LAGDEFG 525 (688)
T ss_pred CCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee-eecHhhc
Confidence 9999887664211000 0000 000000 00111112233467788899999999999877 9999999
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcE---------
Q 003390 650 HPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQ--------- 718 (823)
Q Consensus 650 ~~~~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~--------- 718 (823)
++. .|++++|.. ..+.++|...+ .+++|++|+|+||+|||++|+|+.+..
T Consensus 526 ~t~-----------------~G~~n~y~~~~~~~~~dW~~~~--~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~ 586 (688)
T TIGR02100 526 RTQ-----------------QGNNNAYCQDNEIGWVDWSLDE--GDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADG 586 (688)
T ss_pred cCC-----------------CCCCCCccCCCcccccCccccc--ccHHHHHHHHHHHHHHHhCchhcccccccCCcccCC
Confidence 976 367777754 45789998643 578999999999999999998875411
Q ss_pred --EEEeec-------------CCCcEEEEEc------------CcEEEEEECCCCCcccceEEcccCC-ceEEEEEeCCC
Q 003390 719 --YVSRKD-------------EGDRVIVFER------------GNLVFVFNFHWNSSYSDYRVGCLKP-GKYKIVLDSDD 770 (823)
Q Consensus 719 --~i~~~~-------------~~~~Vlaf~R------------~~llvv~Nf~~~~~~~~~~l~v~~~-g~~~~vl~sd~ 770 (823)
.+.+.. ....+++|.. +.++|++|.+. ....+.| |.. ..|+.+++|..
T Consensus 587 ~~~v~~~~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~--~~~~~~l--P~~~~~w~~~~dt~~ 662 (688)
T TIGR02100 587 LKDVTWLNADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGP--EPVPFKL--PGGGGRWELVLDTAD 662 (688)
T ss_pred CCceEEeCCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCC--CCeEEEC--CCCCCcEEEEecCCC
Confidence 122211 2347888876 14899999984 2334444 432 58999999853
Q ss_pred CCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEE
Q 003390 771 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 812 (823)
Q Consensus 771 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~ 812 (823)
.. ... . .. ...-.+.||++|++||.
T Consensus 663 ~~--~~~-~----~~----------~~~~~~~v~~~s~~vl~ 687 (688)
T TIGR02100 663 EE--APG-I----HL----------DAGQEAELPARSVLLLR 687 (688)
T ss_pred CC--Ccc-c----cc----------cCCCEEEEcCCEEEEEe
Confidence 21 110 0 00 00135889999999986
No 15
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=3.9e-70 Score=661.39 Aligned_cols=585 Identities=19% Similarity=0.273 Sum_probs=391.2
Q ss_pred HHHHHHHHhhcCChhhhhcccccCCcEEcCCc-EEEEEecCCcCeEEEEe-ecCCCCC--cccccccCCCceEEEEeCCC
Q 003390 159 KQMCEDIDKYEGGLAAFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIG-DFNNWNP--NADIMTQNEFGVWEIFLPNN 234 (823)
Q Consensus 159 ~~~~~~i~~~~g~l~~f~~~y~~lG~~~~~~g-v~fr~WAP~A~~V~L~g-dfN~w~~--~~~~m~r~~~GvWei~ip~~ 234 (823)
.+.+++++.|.| +||++++++| ++|+||||+|++|.|++ |+++|+. ..++|++.+.|||+++||+.
T Consensus 306 ~~~~d~~y~y~g----------~LGa~~~~~g~v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~ 375 (1111)
T TIGR02102 306 WRLKDEMYAYDG----------KLGAQLHEDGTVTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKE 375 (1111)
T ss_pred hhhhhhhhccCC----------CCCCEEecCCCEEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCc
Confidence 345666666665 7999998777 79999999999999997 4555654 35799999999999999964
Q ss_pred CCCCCCCCCCCEEEEEEeCCCCcccccCccceeeccCCC------CCCCCcEEeCCCcc--ccccccCCC-CCCCCCceE
Q 003390 235 ADGSPPIPHGSRVKIHMDTPSGIKDSIPAWIKFSVQAPG------EIPYNGIYYDPPEE--EKYVFQHPQ-PKKPKSLRI 305 (823)
Q Consensus 235 ~~g~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~--~~~~~~~~~-~~~~~~~~I 305 (823)
..|.. ..+|..|+|+|.........+|||++.....++ ....+++++|++.. +.|.|.+.. ...+++++|
T Consensus 376 ~~G~~-d~~G~~Y~Y~V~~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vI 454 (1111)
T TIGR02102 376 NTGID-SLTGYYYHYEITRGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAII 454 (1111)
T ss_pred ccCcc-cCCCceEEEEEECCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEE
Confidence 43321 236889999998766566789999987653221 11246888888543 347777532 335689999
Q ss_pred EEeecCCCCCCC--------CCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCC------------------CCCCCCcc
Q 003390 306 YEAHVGMSSTEP--------IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY------------------YASFGYHV 359 (823)
Q Consensus 306 YE~hv~~f~~~~--------~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~------------------~~~~GY~~ 359 (823)
||+|||+|+.++ ..|+|++|+ ++|+|||+|||||||||||++++. ..+|||+|
T Consensus 455 YElHVrdFt~d~~~~~~~~~~~Gtf~gl~-ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp 533 (1111)
T TIGR02102 455 YEAHVRDFTSDPAIAGDLTAQFGTFAAFV-EKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDP 533 (1111)
T ss_pred EEEechhhCcCCCCCcccccCCcCHHHHH-HhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCc
Confidence 999999998543 369999999 699999999999999999997421 12599999
Q ss_pred ccccCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccC-CCCC-cccCC
Q 003390 360 TNFFAPSSRCGT--------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSG-SRGY-HWMWD 429 (823)
Q Consensus 360 ~~~~a~~~~~Gt--------~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~-~~g~-~~~w~ 429 (823)
.+||+|+++||+ ++|||+||++||++||+||||||+||++..+ .|++..+.||+.. ..+. ...|+
T Consensus 534 ~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~-----~f~~~~p~Yy~~~~~~G~~~~~~~ 608 (1111)
T TIGR02102 534 QNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVY-----IFEDLEPNYYHFMDADGTPRTSFG 608 (1111)
T ss_pred CcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccc-----cccccCCCceEeeCCCCCcccccC
Confidence 999999999998 5899999999999999999999999998864 5777777776542 2232 23456
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhcc
Q 003390 430 SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 509 (823)
Q Consensus 430 ~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~ 509 (823)
...+|.++++||++|+++++||++||||||||||+|.++ ..++++.++..++++
T Consensus 609 g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~--------------------------d~~~~~~~~~~l~~~ 662 (1111)
T TIGR02102 609 GGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDH--------------------------DAASIEIAYKEAKAI 662 (1111)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccC--------------------------CHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999998643 124778888889999
Q ss_pred CCCEEEEEecCCCCCCc----eeccccCCcccchhhhHHHHHHHHHHHhhccc-----h------hhhhhhHhhhccc--
Q 003390 510 YPEAVSIGEDVSGMPTF----CIPVQDGGVGFDYRLQMAIADKWIELLKKRDE-----D------WKMGAIVHTMTNR-- 572 (823)
Q Consensus 510 ~p~~~~igE~~~~~~~~----~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~-----~------~~~~~~~~~l~~~-- 572 (823)
.|++++|||.|...... +.+.....+.++.. ...+.+.+++.+++... . ..+..+...+...
T Consensus 663 dP~~~liGE~W~~~~g~~~~~~~~~~~~~~~~~~~-ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~ 741 (1111)
T TIGR02102 663 NPNIIMIGEGWRTYAGDEGDPVQAADQDWMKYTET-VGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPH 741 (1111)
T ss_pred CcCEEEEEecccccCCCCcccccccchhhHhcCCc-ccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCcc
Confidence 99999999999752111 11111111111100 01112333344442100 0 1112233333221
Q ss_pred ----cccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCccc
Q 003390 573 ----RWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEF 648 (823)
Q Consensus 573 ----~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~ 648 (823)
..+.++|||++|||+.++.|+.......+. ..........++.|++.+++|+.+|+|+| ++||||
T Consensus 742 ~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~----------~~~e~~~~~~~r~rla~~llllSQGiPfi-~aGqEf 810 (1111)
T TIGR02102 742 NFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDP----------KVAENQEEIHRRIRLGNLMVLTSQGTAFI-HSGQEY 810 (1111)
T ss_pred ccccCCcccEEEEEecCCCCchHhhhhhccccCc----------ccccchHHHHHHHHHHHHHHHHhCcHhhh-hcchhh
Confidence 245679999999999998765221000000 00000012245778888999999999877 999999
Q ss_pred CCCCCCCCC-----CCCCCCCC---------CCc---CCCCCCCCcc--cCcccCCCcccc----ccchHHHHHHHHHHH
Q 003390 649 GHPEWIDFP-----RGDQRLPN---------GQF---VPGNNFSYDK--CRRRFDLGDADY----LRYRGMQEFDRAMQH 705 (823)
Q Consensus 649 G~~~~~d~p-----~~~~~~~~---------~~~---~~gn~~s~~~--~r~~~~w~~~~~----~~~~~l~~f~r~Li~ 705 (823)
++.+..+-+ -.+...+. |.. .....+||+. .-+.++|..... +.+..+++|+|.||+
T Consensus 811 ~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~ 890 (1111)
T TIGR02102 811 GRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIE 890 (1111)
T ss_pred hcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHH
Confidence 997533200 00010111 100 0122566743 456899986532 223689999999999
Q ss_pred HHHHhcCCCCCcE-----EEEeec--------CCCcEEEEEc-----CcEEEEEECCCCCcccceEEcccCC----ceEE
Q 003390 706 LEEKYGFMTSEHQ-----YVSRKD--------EGDRVIVFER-----GNLVFVFNFHWNSSYSDYRVGCLKP----GKYK 763 (823)
Q Consensus 706 LRk~~~~l~~g~~-----~i~~~~--------~~~~Vlaf~R-----~~llvv~Nf~~~~~~~~~~l~v~~~----g~~~ 763 (823)
|||++++++.+.. .+.+.. ..+.|++|.- +.++|++|.++ . . ..+.+|.. ..|+
T Consensus 891 lRk~~~~fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~-~-~--~~~~lp~~~~~~~~~~ 966 (1111)
T TIGR02102 891 LRRSTDAFRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD-K-A--RTLTLGEDYAHLTVGE 966 (1111)
T ss_pred HHhcCccccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC-C-C--EEEECCCCcccccceE
Confidence 9999998864321 122211 1367899986 46899999884 2 2 34444432 3688
Q ss_pred EEEeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEEEc
Q 003390 764 IVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 814 (823)
Q Consensus 764 ~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~ 814 (823)
.+++.+.. |...+.....+ .-. .-.++|||+|++||...
T Consensus 967 v~~~~~~~---g~~~~~~~~~~-------~~~--~~~~~v~~~s~~V~~~~ 1005 (1111)
T TIGR02102 967 VVVDAEQA---GVTGIAEPKGV-------ELT--AEGLKLDPLTAAVVRVG 1005 (1111)
T ss_pred EEEccccc---Ccccccccccc-------ccc--CCeEEEcCcEEEEEEec
Confidence 88875432 21111100000 000 12588999999999876
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=3.8e-69 Score=632.56 Aligned_cols=548 Identities=20% Similarity=0.296 Sum_probs=370.2
Q ss_pred cccCCcEEcCCcEEEEEecCCcCeEEEEeecCCCC-CcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC--
Q 003390 179 YEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS-- 255 (823)
Q Consensus 179 y~~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~-~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~-- 255 (823)
..+||++++++|++|+||||+|++|.|++ |+++. ...++|++.++|||+++||+... |..|+|+|+++.
T Consensus 9 ~~pLGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~-------G~~Y~yrv~g~~~p 80 (658)
T PRK03705 9 PTPLGAHYDGQGVNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARP-------GLRYGYRVHGPWQP 80 (658)
T ss_pred CCCcceEEeCCCEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCC-------CCEEEEEEccccCc
Confidence 35899999999999999999999999998 66643 34578998889999999997654 779999998642
Q ss_pred --C-----cccccCccceeeccCCCC------------------CCCCcEEeCCCccccccccCCCC-C-CCCCceEEEe
Q 003390 256 --G-----IKDSIPAWIKFSVQAPGE------------------IPYNGIYYDPPEEEKYVFQHPQP-K-KPKSLRIYEA 308 (823)
Q Consensus 256 --~-----~~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~-~-~~~~~~IYE~ 308 (823)
| ....+||||+........ ...++++.++ +|.|++..+ . ..++++|||+
T Consensus 81 ~~g~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~ 156 (658)
T PRK03705 81 AQGHRFNPAKLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEA 156 (658)
T ss_pred ccCcccCCCcEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEE
Confidence 2 234689999987543110 0124566653 488987543 2 3478999999
Q ss_pred ecCCCCC-CC-----CCCCHHhhHh-hhhhhHHHcCCCEEEECCcccCCCC---------CCCCCccccccCcCCCCCCH
Q 003390 309 HVGMSST-EP-----IINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSYY---------ASFGYHVTNFFAPSSRCGTP 372 (823)
Q Consensus 309 hv~~f~~-~~-----~~G~~~~~~~-~~L~yLk~LGvt~I~L~Pi~e~~~~---------~~~GY~~~~~~a~~~~~Gt~ 372 (823)
|||+|+. ++ ..|+|+++++ .+|||||+||||+||||||++++.. .+|||++.+||+|+++|||.
T Consensus 157 hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~ 236 (658)
T PRK03705 157 HVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASG 236 (658)
T ss_pred ehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCC
Confidence 9999985 22 3599999995 3699999999999999999998642 57999999999999999994
Q ss_pred -----HHHHHHHHHHHHcCCEEEEEecccccCCCccccc-cCCCCCCC-CccccCCCCCcccC--CCCCCCCCCHHHHHH
Q 003390 373 -----DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGTDG-HYFHSGSRGYHWMW--DSRLFNYGSWEVLRF 443 (823)
Q Consensus 373 -----edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~fdg~~~-~yf~~~~~g~~~~w--~~~~ln~~~~~V~~~ 443 (823)
+|||+||++||++||+||||||+||++.....+. ..+.+.++ .||.....+....| +.++||+++|+|+++
T Consensus 237 ~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~ 316 (658)
T PRK03705 237 PETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDW 316 (658)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHH
Confidence 7999999999999999999999999987432221 12444333 34444333332223 347999999999999
Q ss_pred HHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCC
Q 003390 444 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGM 523 (823)
Q Consensus 444 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~ 523 (823)
|+++++||++||||||||||+|.+|... ..|. . ...+++.++. ..+.|++++|||.|...
T Consensus 317 iid~l~~W~~e~gVDGFRfD~a~~l~~~-----~~~~------------~-~~~~~~ai~~--d~vl~~~~ligE~Wd~~ 376 (658)
T PRK03705 317 AIDCLRYWVETCHVDGFRFDLATVLGRT-----PEFR------------Q-DAPLFTAIQN--DPVLSQVKLIAEPWDIG 376 (658)
T ss_pred HHHHHHHHHHHhCCCEEEEEcHhhhCcC-----cccc------------h-hhHHHHHHhh--CccccceEEEEecccCC
Confidence 9999999999999999999999988432 1111 0 0123444432 24568999999999654
Q ss_pred CCceeccccCCcccc---hhhhHHHHHHHHHHHhhccchhhhhhhHhhhc--------cccccccceecccCcCcccccc
Q 003390 524 PTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--------NRRWLEKCVAYAESHDQALVGD 592 (823)
Q Consensus 524 ~~~~~~~~~gglgFd---~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~--------~~~~~~~~v~y~enHD~~r~g~ 592 (823)
+.. +..+. |+ ..+|..+.+.++.++..... ....+...+. ..+.+.++|||+++||+.++.|
T Consensus 377 ~~~---~~~g~--~~~~~~~~Nd~fRd~ir~f~~~~~~--~~~~~~~~l~gs~~~~~~~~~~p~~siNyv~~HD~~TL~D 449 (658)
T PRK03705 377 PGG---YQVGN--FPPPFAEWNDHFRDAARRFWLHGDL--PLGEFAGRFAASSDVFKRNGRLPSASINLVTAHDGFTLRD 449 (658)
T ss_pred CCh---hhhcC--CCcceEEEchHHHHHHHHHHccCCC--cHHHHHHHHhcchhhccccCCCCCeEEEEEEeCCCccHHH
Confidence 321 11111 21 12344444445555443211 1112222221 1234678999999999988766
Q ss_pred cchhhhcc---Chh---------HHHhhhcC--CCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCC
Q 003390 593 KTIAFWLM---DKD---------MYDFMALD--RPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPR 658 (823)
Q Consensus 593 ~t~~~~~~---~~~---------~~~~~~~~--~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~ 658 (823)
+....... +++ ..+..... .....+.....++.|++.+++|+++|+|+| |||+|||++.
T Consensus 450 ~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i-~~GdE~grtq------ 522 (658)
T PRK03705 450 CVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPML-LAGDEHGHSQ------ 522 (658)
T ss_pred HHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHH-HhhHHhccCC------
Confidence 42110000 000 00000000 111112234556788899999999999988 9999999976
Q ss_pred CCCCCCCCCcCCCCCCCCcc--cCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCc---------EEEEeec---
Q 003390 659 GDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH---------QYVSRKD--- 724 (823)
Q Consensus 659 ~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~---------~~i~~~~--- 724 (823)
.||+++|+. ..+.++|... .+++++|+|+||+|||++|+|+... .|+....
T Consensus 523 -----------~G~nN~y~~~~~i~~~dW~~~----~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~ 587 (658)
T PRK03705 523 -----------HGNNNAYCQDNALTWLDWSQA----DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPL 587 (658)
T ss_pred -----------CCCCCCccCCCCccccccchh----hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcC
Confidence 377777764 3467999853 3699999999999999999886432 2321111
Q ss_pred ------CCCcEEEEEc-CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCccccccccccCCCCe
Q 003390 725 ------EGDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPH 797 (823)
Q Consensus 725 ------~~~~Vlaf~R-~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~ 797 (823)
.....++|.- +.++|++|.+. .. ..+.+|. +.|+.+++++.. +. . +.
T Consensus 588 ~~~~w~~~~~~~~~~~~~~~~v~~N~~~--~~--~~~~lp~-~~w~~~~~~~~~---~~-----~---------~~---- 641 (658)
T PRK03705 588 SADEWQQGPKQLQILLSDRWLIAINATL--EV--TEIVLPE-GEWHAIPPFAGE---DN-----P---------VI---- 641 (658)
T ss_pred ChhHhCCcceEEEEEECCCEEEEECCCC--CC--eEEECCC-cceEEEEccCCC---cc-----c---------cc----
Confidence 1134566655 67999999884 22 3444454 789999654331 00 0 00
Q ss_pred EEEEEEcCceEEEEEE
Q 003390 798 SFLVYAPSRTAVVYAL 813 (823)
Q Consensus 798 ~i~l~lp~~s~~V~~~ 813 (823)
...+.+|++|.+|+..
T Consensus 642 ~~~~~~~~~~~~~~~~ 657 (658)
T PRK03705 642 TAVWHGPAHGVCVFQR 657 (658)
T ss_pred CceeeecCcEEEEEec
Confidence 1346799999999863
No 17
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.1e-66 Score=620.78 Aligned_cols=553 Identities=17% Similarity=0.232 Sum_probs=371.9
Q ss_pred HHHHHHhhcCChhhhhcccccCCcEEcCCcEEEEEecCCcCeEEEEeecCCCC-CcccccccC-CCceEEEEeCCCCCCC
Q 003390 161 MCEDIDKYEGGLAAFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQN-EFGVWEIFLPNNADGS 238 (823)
Q Consensus 161 ~~~~i~~~~g~l~~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~-~~~~~m~r~-~~GvWei~ip~~~~g~ 238 (823)
.+++++.|.|.- ..||++++++|++|+||||+|++|.|++..+++. ...++|+++ +.|||+++||+...
T Consensus 114 ~lD~~y~y~~~~-------~~LGa~~~~~gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~-- 184 (898)
T TIGR02103 114 VLDALYAYAGPA-------LSLGATLTDSGVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWK-- 184 (898)
T ss_pred hhhHHhhcCCCC-------CCCCcEEeCCcEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCC--
Confidence 445555565510 2499999999999999999999999998666653 456899987 79999999997665
Q ss_pred CCCCCCCEEEEEEeCC---CCc---ccccCccceeeccCCCCCCCCcEEeCCCc--cccccccCCC---CC--CCCCceE
Q 003390 239 PPIPHGSRVKIHMDTP---SGI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQHPQ---PK--KPKSLRI 305 (823)
Q Consensus 239 ~~~~~g~~y~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~---~~--~~~~~~I 305 (823)
|..|+|+|+.. .|. ....|||++... .++. .++++|+.. .++..|...+ |. .+++++|
T Consensus 185 -----G~~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als-~n~~---~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iI 255 (898)
T TIGR02103 185 -----GAYYRYEVTVYHPSTGKVETYLVTDPYSVSLS-ANSE---YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVL 255 (898)
T ss_pred -----CCEeEEEEEEecCCCCeECCeEEeCcCcceEc-CCCC---CeEEeCCccccCCCcchhhcccccCCcCCCcccEE
Confidence 66888888732 232 357899998764 3443 588998753 2466776432 32 4689999
Q ss_pred EEeecCCCCCC------CCCCCHHhhHhh------hhhhHHHcCCCEEEECCcccCCC----------------------
Q 003390 306 YEAHVGMSSTE------PIINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY---------------------- 351 (823)
Q Consensus 306 YE~hv~~f~~~------~~~G~~~~~~~~------~L~yLk~LGvt~I~L~Pi~e~~~---------------------- 351 (823)
||+|||+||.. ...|+|.+|++. .|.||++||||||+||||+++..
T Consensus 256 YElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~~~~ 335 (898)
T TIGR02103 256 YELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLCELN 335 (898)
T ss_pred EEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhhccc
Confidence 99999999853 246999999952 36666688999999999998741
Q ss_pred ----------------------------------------CCCCCCccccccCcCCCCCC-------HHHHHHHHHHHHH
Q 003390 352 ----------------------------------------YASFGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHE 384 (823)
Q Consensus 352 ----------------------------------------~~~~GY~~~~~~a~~~~~Gt-------~edlk~LV~~aH~ 384 (823)
..+|||+|.+||+|+++|++ ..|||+||++||+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV~alH~ 415 (898)
T TIGR02103 336 PDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMVQALNK 415 (898)
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHHHHHHH
Confidence 12799999999999999998 3799999999999
Q ss_pred cCCEEEEEecccccCCCccccccCCCCCCCCccccCC-CCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEE
Q 003390 385 LGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGS-RGYH-WMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF 462 (823)
Q Consensus 385 ~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~-~g~~-~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~ 462 (823)
+||+||||||+||++..+......|+...+.||+... .|.. ...+..+++.++++||++|+++++||++|||||||||
T Consensus 416 ~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRf 495 (898)
T TIGR02103 416 TGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWAKDYKVDGFRF 495 (898)
T ss_pred CCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998765444557777777776432 2321 1122356789999999999999999999999999999
Q ss_pred cccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCce-ecccc--------C
Q 003390 463 DGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFC-IPVQD--------G 533 (823)
Q Consensus 463 D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~-~~~~~--------g 533 (823)
|+|+++. .+||+++++.+++++|+++++||.|....... ..... .
T Consensus 496 Dlm~~~~--------------------------~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~ 549 (898)
T TIGR02103 496 DLMGHHP--------------------------KAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGT 549 (898)
T ss_pred echhhCC--------------------------HHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCC
Confidence 9998872 45899999999999999999999996321111 01110 1
Q ss_pred Ccc-cchhhhHHHHHHHHHHHhhcc-----------chhhhh------------------------hh----Hhhh----
Q 003390 534 GVG-FDYRLQMAIADKWIELLKKRD-----------EDWKMG------------------------AI----VHTM---- 569 (823)
Q Consensus 534 glg-Fd~~~~~~~~d~~~~~l~~~~-----------~~~~~~------------------------~~----~~~l---- 569 (823)
|+| |+-++ ++.+++.. .++..+ .+ ...+
T Consensus 550 ~ig~FnD~~--------RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~ 621 (898)
T TIGR02103 550 GIGTFSDRL--------RDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFV 621 (898)
T ss_pred CeEEeccch--------hhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCcccccc
Confidence 122 33332 22222100 000000 00 0000
Q ss_pred --------------c-------cccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHH
Q 003390 570 --------------T-------NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMI 628 (823)
Q Consensus 570 --------------~-------~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a 628 (823)
. ....+.++|||+++||+.++.|+... .+ +.....+..++.++++
T Consensus 622 ~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~--~~------------~~~~~~~~r~r~~~la 687 (898)
T TIGR02103 622 LTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISY--KA------------AAETPSAERVRMQAVS 687 (898)
T ss_pred ccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHh--hC------------CCCCCHHHHHHHHHHH
Confidence 0 00235678999999999998876321 00 1111223456778899
Q ss_pred HHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cCcccCCCcccc----------------
Q 003390 629 RLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADY---------------- 690 (823)
Q Consensus 629 ~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~---------------- 690 (823)
.+++|+.+|+|+| .+|+||.+.+-.+ .+||+. .-++++|.....
T Consensus 688 ~a~~~lsQGipF~-haG~E~lRSK~~~-----------------~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w 749 (898)
T TIGR02103 688 LSTVMLGQGIPFF-HAGSELLRSKSFD-----------------RDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNW 749 (898)
T ss_pred HHHHHHhChhhHH-hcchHhhcCCCCC-----------------CCCCcCchhhheecccccccccccCCCcccccccch
Confidence 9999999999988 9999999976322 222221 112334432211
Q ss_pred ----------------ccchHHHHHHHHHHHHHHHhcCCCCCc-----EEEEeecC----CCcEEEEEc-----------
Q 003390 691 ----------------LRYRGMQEFDRAMQHLEEKYGFMTSEH-----QYVSRKDE----GDRVIVFER----------- 734 (823)
Q Consensus 691 ----------------~~~~~l~~f~r~Li~LRk~~~~l~~g~-----~~i~~~~~----~~~Vlaf~R----------- 734 (823)
.....+.+++++||+||+.+|+++-+. ..+.+.+. .++||+|.-
T Consensus 750 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~ 829 (898)
T TIGR02103 750 PIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASL 829 (898)
T ss_pred hhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccCCcCCCCEEEEEEcCCcccccccc
Confidence 124689999999999999999987431 12333332 267999864
Q ss_pred ----CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEE
Q 003390 735 ----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVV 810 (823)
Q Consensus 735 ----~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V 810 (823)
+.++||+|-+++ ...+ ++......|+..-.... ++...+... .+.. ..-++++||+|++|
T Consensus 830 d~~~~~ivVv~Na~~~--~~~~-~~~~~~~~~~l~~~~~~---~~d~~v~~~--------~~~~--~~~~~~vp~~s~~V 893 (898)
T TIGR02103 830 DPRYDGIVVIFNARPE--EVTL-SPDFAGTGLELHAVQQA---SGDESVAKS--------VYSA--ANGTFTVPAWTTAV 893 (898)
T ss_pred ccccCeEEEEEcCCCc--cEEE-ecccCCCcEEEEecccc---cCccccccc--------eeec--cCCEEEEcCcEEEE
Confidence 248999999853 2233 43222335766432110 111111100 0000 01368999999999
Q ss_pred EEE
Q 003390 811 YAL 813 (823)
Q Consensus 811 ~~~ 813 (823)
|..
T Consensus 894 ~~~ 896 (898)
T TIGR02103 894 FVL 896 (898)
T ss_pred EEe
Confidence 986
No 18
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=3.3e-64 Score=597.15 Aligned_cols=486 Identities=17% Similarity=0.232 Sum_probs=330.3
Q ss_pred cCCcEEcCCcEEEEEecCCcCeEEEEeecCCCCC----cccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC--
Q 003390 181 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-- 254 (823)
Q Consensus 181 ~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~~----~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~-- 254 (823)
+||++++++|++|+||||+|++|.|++ |++++. ..++|+ .+.|||++++++..+ |..|+|+|...
T Consensus 214 ~LGA~~~~~g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~-------G~~Y~Y~V~v~~p 284 (970)
T PLN02877 214 PLGAHFSKDAVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWE-------GCYYVYEVSVYHP 284 (970)
T ss_pred CCcceEecCCEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc-CCCCEEEEEeccCCC-------CCeeEEEEeeccc
Confidence 799999999999999999999999997 665532 235787 679999999998765 56888988632
Q ss_pred -CCc---ccccCccceeeccCCCCCCCCcEEeCCCc--cccccccC---CCC--CCCCCceEEEeecCCCCCCC------
Q 003390 255 -SGI---KDSIPAWIKFSVQAPGEIPYNGIYYDPPE--EEKYVFQH---PQP--KKPKSLRIYEAHVGMSSTEP------ 317 (823)
Q Consensus 255 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~---~~~--~~~~~~~IYE~hv~~f~~~~------ 317 (823)
.|. ....|||++....+ +. .+++.|+.. .++..|.. ++| ..+++++|||+|||+||..+
T Consensus 285 ~~g~~~~~~v~DPYA~als~n-g~---~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~ 360 (970)
T PLN02877 285 STGKVETCYANDPYARGLSAD-GR---RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPD 360 (970)
T ss_pred CCCcccccccCCccceEEecC-CC---ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcC
Confidence 122 35689999876543 33 477777753 24567764 233 24689999999999998642
Q ss_pred CCCCHHhhHhh------hhhhHHHcCCCEEEECCcccCCC-------------------------------------CCC
Q 003390 318 IINTYANFRDD------VLPRIKRLGYNAVQIMAVQEHSY-------------------------------------YAS 354 (823)
Q Consensus 318 ~~G~~~~~~~~------~L~yLk~LGvt~I~L~Pi~e~~~-------------------------------------~~~ 354 (823)
..|+|.+|++. .|+|||+||||||||||+++++. ..+
T Consensus 361 ~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yN 440 (970)
T PLN02877 361 FRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYN 440 (970)
T ss_pred CCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCC
Confidence 35999999952 36666666999999999998743 257
Q ss_pred CCCccccccCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEEecccccCCCcccc-ccCCCCCCCCcccc-CCCCCc
Q 003390 355 FGYHVTNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDG-LNMFDGTDGHYFHS-GSRGYH 425 (823)
Q Consensus 355 ~GY~~~~~~a~~~~~Gt-------~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~-~~~fdg~~~~yf~~-~~~g~~ 425 (823)
|||+|.+||+|+++|+| +.|||+||++||++||+||||||+||++..++++ .+.++...+.||+. ...|..
T Consensus 441 WGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~ 520 (970)
T PLN02877 441 WGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFI 520 (970)
T ss_pred CCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCc
Confidence 99999999999999998 4689999999999999999999999998765443 35677777766654 333321
Q ss_pred cc-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHH
Q 003390 426 WM-WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVND 504 (823)
Q Consensus 426 ~~-w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~ 504 (823)
.. -+....+.++++||++|+++++||++||||||||||+|.++... .|+.+++
T Consensus 521 ~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~--------------------------tm~~~~~ 574 (970)
T PLN02877 521 ENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKR--------------------------TMVRAKD 574 (970)
T ss_pred ccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHH--------------------------HHHHHHH
Confidence 11 12245577899999999999999999999999999999887321 3444455
Q ss_pred hhhcc-------C-CCEEEEEecCCCCCC--cee---cccc----CCcc-cchhhhHHHHHHHHHHHhhcc-------ch
Q 003390 505 MIHGL-------Y-PEAVSIGEDVSGMPT--FCI---PVQD----GGVG-FDYRLQMAIADKWIELLKKRD-------ED 559 (823)
Q Consensus 505 ~v~~~-------~-p~~~~igE~~~~~~~--~~~---~~~~----gglg-Fd~~~~~~~~d~~~~~l~~~~-------~~ 559 (823)
.++++ . |+++++||.|..... ..+ ..+. .|+| |+-++ ++.+++.. .+
T Consensus 575 ~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~--------RDavkGg~~F~~~~~qG 646 (970)
T PLN02877 575 ALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRI--------RDAMLGGSPFGHPLQQG 646 (970)
T ss_pred HHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchh--------HHHHcCCCCCCCcCCCc
Confidence 55544 3 889999999963210 000 0000 1122 22222 22222100 00
Q ss_pred hhh-------------------------h----hhHhhhc--------------------c------ccccccceecccC
Q 003390 560 WKM-------------------------G----AIVHTMT--------------------N------RRWLEKCVAYAES 584 (823)
Q Consensus 560 ~~~-------------------------~----~~~~~l~--------------------~------~~~~~~~v~y~en 584 (823)
+.. . .+...+. + ...+.++|||+++
T Consensus 647 f~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~ 726 (970)
T PLN02877 647 FVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSA 726 (970)
T ss_pred eecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeec
Confidence 000 0 0000000 0 0135678999999
Q ss_pred cCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCC
Q 003390 585 HDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLP 664 (823)
Q Consensus 585 HD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~ 664 (823)
||+.++.|+... ..+.....+..++.++++.+++|+.+|+|+| .+|+||...+-.
T Consensus 727 HDN~TL~D~l~~--------------~~~~~~s~~~r~r~~~la~aiv~lsQGipF~-haG~E~lRSK~~---------- 781 (970)
T PLN02877 727 HDNETLFDIISL--------------KTPMEISVDERCRINHLATSIIALSQGIPFF-HAGDEILRSKSL---------- 781 (970)
T ss_pred cCCchHHHHHHh--------------hcCCCCCHHHHHHHHHHHHHHHHHhChhhHH-hcchhhhcCCCC----------
Confidence 999998876321 0011112344567889999999999999988 999999997632
Q ss_pred CCCcCCCCCCCCcc--cCcccCCCccc---------ccc-----------------------chHHHHHHHHHHHHHHHh
Q 003390 665 NGQFVPGNNFSYDK--CRRRFDLGDAD---------YLR-----------------------YRGMQEFDRAMQHLEEKY 710 (823)
Q Consensus 665 ~~~~~~gn~~s~~~--~r~~~~w~~~~---------~~~-----------------------~~~l~~f~r~Li~LRk~~ 710 (823)
..+||+. .-++++|.... ..+ .....+++|+||+||+.+
T Consensus 782 -------d~nSYnSgD~~N~lDw~~~~nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~ 854 (970)
T PLN02877 782 -------DRDSYNSGDWFNRLDFSYDSNNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSS 854 (970)
T ss_pred -------CCCCCcCchhhheeccccccCccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcC
Confidence 2334432 12345555411 011 146689999999999999
Q ss_pred cCCCCCc-----EEEEeecC----CCcEEEEEc-----------------CcEEEEEECCC
Q 003390 711 GFMTSEH-----QYVSRKDE----GDRVIVFER-----------------GNLVFVFNFHW 745 (823)
Q Consensus 711 ~~l~~g~-----~~i~~~~~----~~~Vlaf~R-----------------~~llvv~Nf~~ 745 (823)
|+++-+. +.+.+.+. .++||+|.- +.++||+|-++
T Consensus 855 plFrl~t~~~I~~~v~F~~~g~~~~~gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~ 915 (970)
T PLN02877 855 PLFRLRTANAIQERVRFHNTGPSSIPGVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARP 915 (970)
T ss_pred cccCCCCHHHHHhhcEEeccCCCcCCCEEEEEEcCCCCccccccccccccCcEEEEEcCCC
Confidence 9987441 12223232 347999864 23899999885
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=9.2e-62 Score=602.74 Aligned_cols=477 Identities=18% Similarity=0.274 Sum_probs=330.7
Q ss_pred ccCCcEEcCCcEEEEEecCCcCeEEEEeecCCCCCc---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003390 180 EKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256 (823)
Q Consensus 180 ~~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~~~---~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~ 256 (823)
.+||+++.++||+|+||||+|++|.|+. |++|... ..+|.+..+|||+++|++... |..|+|+++.+.+
T Consensus 14 ~plGA~~~~~gv~F~v~ap~A~~V~L~l-f~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~-------g~~Ygyrv~g~~~ 85 (1221)
T PRK14510 14 EPLGAVPDGGGVNLALFSGAAERVEFCL-FDLWGVREEARIKLPGRTGDVWHGFIVGVGP-------GARYGNRQEGPGG 85 (1221)
T ss_pred CCCceEEECCeEEEEEECCCCCEEEEEE-EECCCCCeeEEEECCCCcCCEEEEEEccCCC-------CcEEEEEeccCCC
Confidence 5899999999999999999999999985 8887543 367877789999999997654 6689999987543
Q ss_pred c---------ccccCccceeeccCCC--CCCC------------CcEEeCCCc--cccccccCCCC-CC-CCCceEEEee
Q 003390 257 I---------KDSIPAWIKFSVQAPG--EIPY------------NGIYYDPPE--EEKYVFQHPQP-KK-PKSLRIYEAH 309 (823)
Q Consensus 257 ~---------~~~~~~~~~~~~~~~~--~~~~------------~~~~~d~~~--~~~~~~~~~~~-~~-~~~~~IYE~h 309 (823)
. ...+|||++....... ...| .+.+.+|.. ..+|.|....+ .. ..+.+|||+|
T Consensus 86 p~~g~rf~p~~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~h 165 (1221)
T PRK14510 86 PGEGHRFNPPKLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMN 165 (1221)
T ss_pred cccccccCCCeEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEc
Confidence 2 3467899877654211 0000 111222210 11478875443 32 3678999999
Q ss_pred cCCCCCC-C-----CCCCHHhhHh-hhhhhHHHcCCCEEEECCcccCCC---------CCCCCCccccccCcCCCCC--C
Q 003390 310 VGMSSTE-P-----IINTYANFRD-DVLPRIKRLGYNAVQIMAVQEHSY---------YASFGYHVTNFFAPSSRCG--T 371 (823)
Q Consensus 310 v~~f~~~-~-----~~G~~~~~~~-~~L~yLk~LGvt~I~L~Pi~e~~~---------~~~~GY~~~~~~a~~~~~G--t 371 (823)
|+.|+.. + ..|+|+++.+ ++|+|||+||||+||||||++++. .++|||++.|||+|+|+|| +
T Consensus 166 vr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~ 245 (1221)
T PRK14510 166 VRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGG 245 (1221)
T ss_pred cchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCc
Confidence 9999852 2 3478888872 478899999999999999999854 2469999999999999999 9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccc-cCCCCC-CCCccccCC---CCCcccCCC-CCCCCCCHHHHHHHH
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL-NMFDGT-DGHYFHSGS---RGYHWMWDS-RLFNYGSWEVLRFLL 445 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~-~~fdg~-~~~yf~~~~---~g~~~~w~~-~~ln~~~~~V~~~l~ 445 (823)
.+|||+||++||++||+||||||+||++.++..+. -.+.+. ...||+... ..+...|+. ..+|+++|+|+++|+
T Consensus 246 ~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~ 325 (1221)
T PRK14510 246 EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325 (1221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999998754321 122332 234555331 123334443 568999999999999
Q ss_pred HHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEE-----EEecC
Q 003390 446 SNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS-----IGEDV 520 (823)
Q Consensus 446 ~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~-----igE~~ 520 (823)
++++||++ |||||||||++.+|... ...||+.++..++++.|+.++ |||.|
T Consensus 326 d~lr~Wv~-~gVDGfRfDla~~l~r~-----------------------~~~f~~~~~~~l~ai~~d~~l~~~~ligE~W 381 (1221)
T PRK14510 326 DVLRSWAK-RGVDGFRLDLADELARE-----------------------PDGFIDEFRQFLKAMDQDPVLRRLKMIAEVW 381 (1221)
T ss_pred HHHHHHHH-hCCCEEEEechhhhccC-----------------------ccchHHHHHHHHHHhCCCcCcccCcEEEecc
Confidence 99999999 99999999999887321 234889999999999998877 99999
Q ss_pred CCCCCceeccccCCcccc---hhhhHHHHHHHHHHHhhccchhhhhhhHhhhcc--------ccccccceecccCcCccc
Q 003390 521 SGMPTFCIPVQDGGVGFD---YRLQMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWLEKCVAYAESHDQAL 589 (823)
Q Consensus 521 ~~~~~~~~~~~~gglgFd---~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~~--------~~~~~~~v~y~enHD~~r 589 (823)
...+.. +..+. |+ ..+|..+.+.++.++++... ....+...+.. .+.+..+|||++|||+.|
T Consensus 382 d~~~~~---~~~g~--f~~~~~~~N~~frd~vr~f~~g~~~--~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi~~HD~~r 454 (1221)
T PRK14510 382 DDGLGG---YQYGK--FPQYWGEWNDPLRDIMRRFWLGDIG--MAGELATRLAGSADIFPHRRRNFSRSINFITAHDGFT 454 (1221)
T ss_pred cCCCCc---cccCC--CCcceeeeccHHHHHHHHHhcCCCc--hHHHHHHHHhCcHhhcCccCCCcccceEEEeeCCchH
Confidence 653221 11121 21 12333444555556554311 01122222211 223456899999999998
Q ss_pred ccccchhhhcc---Chh---------HHHhhh--cCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCC
Q 003390 590 VGDKTIAFWLM---DKD---------MYDFMA--LDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWID 655 (823)
Q Consensus 590 ~g~~t~~~~~~---~~~---------~~~~~~--~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d 655 (823)
+.+..-..... +++ ..+... +.+.+..+.....++.|++.+++|+++|+|+| |||||+|++.
T Consensus 455 l~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~I-y~GdE~g~tq--- 530 (1221)
T PRK14510 455 LLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPML-YYGDEAGRSQ--- 530 (1221)
T ss_pred HHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEE-ecchhccccc---
Confidence 86532100000 000 000000 01111112233456778899999999999877 9999999975
Q ss_pred CCCCCCCCCCCCcCCCCCCCC--cccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCc
Q 003390 656 FPRGDQRLPNGQFVPGNNFSY--DKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEH 717 (823)
Q Consensus 656 ~p~~~~~~~~~~~~~gn~~s~--~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~ 717 (823)
.||+++| +.+|+.|+|... .++|++|+|+||+|||++++|+.+.
T Consensus 531 --------------~Gn~n~y~~~~~r~~~~W~~~----~~~l~~f~k~Li~lRk~~~~L~~g~ 576 (1221)
T PRK14510 531 --------------NGNNNGYAQDNNRGTYPWGNE----DEELLSFFRRLIKLRREYGVLRQGE 576 (1221)
T ss_pred --------------CCCCCCCCCCCccccCCcccc----cHHHHHHHHHHHHHHHhChhhccCc
Confidence 3666666 467889999864 3589999999999999999998764
No 20
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.6e-57 Score=535.00 Aligned_cols=462 Identities=17% Similarity=0.216 Sum_probs=306.6
Q ss_pred cCCcEEEEEecCC---cCeEEEEeecCCCCCcccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccc
Q 003390 187 SDTGITYREWAPG---AKSASLIGDFNNWNPNADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKD 259 (823)
Q Consensus 187 ~~~gv~fr~WAP~---A~~V~L~gdfN~w~~~~~~m~r~----~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~~~~ 259 (823)
..+-+++|+..+. .++|.|.....+. ....+|++. ....|+++|+.... ..-..|.|++...++..
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~-~~~~~m~~~~~~~~~~~~~~~~~~~~~-----~~~~~Y~F~l~~~~~~~- 89 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNE-EYLLPMEKQRSQPQVTAWRASLPLNSG-----QPRRRYSFKLLWHDRQR- 89 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCC-EEEEEeEEeecCCCceEEEEEEEcCCC-----CceEEEEEEEEeCCEEE-
Confidence 4556888888774 4578887644332 234678753 23469999984311 11246777775433221
Q ss_pred ccCccceeeccCCCCCCCCcEEeCCCcccccccc--CCCCCCCCCceEEEeecCCCCCCCC-------------------
Q 003390 260 SIPAWIKFSVQAPGEIPYNGIYYDPPEEEKYVFQ--HPQPKKPKSLRIYEAHVGMSSTEPI------------------- 318 (823)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~IYE~hv~~f~~~~~------------------- 318 (823)
|. ...+.. . ..++....|.+. .+.|.+-++.|||||++..|.+.+.
T Consensus 90 ----~~----~~~g~~----~-~~~~~~~~f~~~~~~~~P~W~~~~v~YqIfpDRF~ng~~~n~~~~~~~~~~~~~~~~~ 156 (598)
T PRK10785 90 ----WF----TPQGFS----R-RPPARLEQFAVDVPDQGPQWVADQVFYQIFPDRFARSLPREAVQDHVYYHHAAGQEII 156 (598)
T ss_pred ----EE----cCCcee----e-ccCCCccceEeeCCCCCCchhhcCEEEEechhhhcCCCcccCccCCceeeccCCCccc
Confidence 10 000000 0 000000112111 2334455889999999977742100
Q ss_pred ------------------CCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHH
Q 003390 319 ------------------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLID 380 (823)
Q Consensus 319 ------------------~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~ 380 (823)
-|+|+||+ ++|||||+||||+|||+||++++. +|||+++||++|||+|||.++|++||+
T Consensus 157 ~~~w~~~~~~~~~~~~f~GGDl~GI~-~kLdYL~~LGv~~I~L~Pif~s~s--~hgYd~~Dy~~iDp~~Gt~~df~~Lv~ 233 (598)
T PRK10785 157 LRDWDEPVTAQAGGSTFYGGDLDGIS-EKLPYLKKLGVTALYLNPIFTAPS--VHKYDTEDYRHVDPQLGGDAALLRLRH 233 (598)
T ss_pred ccCcCCCcccccccccccCcCHHHHH-HHHHHHHHcCCCEEEeCCcccCCC--CCCcCcccccccCcccCCHHHHHHHHH
Confidence 28999999 699999999999999999999875 799999999999999999999999999
Q ss_pred HHHHcCCEEEEEecccccCCCcccccc-------CCCCC---CCCccccCCCCCcccC----CCCCCCCCCHHHHHHHHH
Q 003390 381 KAHELGLLVLMDIVHSHASNNVLDGLN-------MFDGT---DGHYFHSGSRGYHWMW----DSRLFNYGSWEVLRFLLS 446 (823)
Q Consensus 381 ~aH~~GI~VIlDvV~NH~~~~~~~~~~-------~fdg~---~~~yf~~~~~g~~~~w----~~~~ln~~~~~V~~~l~~ 446 (823)
+||++||+||||+|+||++.+|++... .+... ...||.....+....| +.++||++||+|+++|++
T Consensus 234 ~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~ 313 (598)
T PRK10785 234 ATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYR 313 (598)
T ss_pred HHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHh
Confidence 999999999999999999998753211 11111 1125543333332233 348999999999999995
Q ss_pred ----HHHHHHHh-cCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 003390 447 ----NARWWLEE-YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 521 (823)
Q Consensus 447 ----~l~~Wl~e-~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~ 521 (823)
++++|+++ |||||||+|+|..+... + ......+||+++++.+++.+|++++|||.|.
T Consensus 314 ~~~~v~~~Wl~~~~giDG~RlDva~~v~~~--~----------------~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~ 375 (598)
T PRK10785 314 GEDSIVRHWLKAPYNIDGWRLDVVHMLGEG--G----------------GARNNLQHVAGITQAAKEENPEAYVLGEHFG 375 (598)
T ss_pred hhhHHHHHhhcCCCCCcEEEEecHhHhccc--c----------------CccccHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 79999997 99999999999766311 0 0112457999999999999999999999986
Q ss_pred CCCCceeccccCCcccchhhhH-HHHHHHHHHHhhccchh-----hhhhhHhhhc----ccccc--ccceecccCcCccc
Q 003390 522 GMPTFCIPVQDGGVGFDYRLQM-AIADKWIELLKKRDEDW-----KMGAIVHTMT----NRRWL--EKCVAYAESHDQAL 589 (823)
Q Consensus 522 ~~~~~~~~~~~gglgFd~~~~~-~~~d~~~~~l~~~~~~~-----~~~~~~~~l~----~~~~~--~~~v~y~enHD~~r 589 (823)
... .+..+. +||..++. .+...+..++......+ ....+...+. ...+. ..++||++|||+.|
T Consensus 376 ~~~----~~l~~~-~~d~~mny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~l~nHD~~R 450 (598)
T PRK10785 376 DAR----QWLQAD-VEDAAMNYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDEYRAGLPHQQQLRQFNQLDSHDTAR 450 (598)
T ss_pred Chh----hhccCc-cccccccchhhhhHHHHHhhccccccCccCCCHHHHHHHHHHHHHhCCHHHHHHhhhccCCCccch
Confidence 422 121111 12222221 12222233332211000 1111111111 11111 12468999999998
Q ss_pred ccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcC
Q 003390 590 VGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFV 669 (823)
Q Consensus 590 ~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~ 669 (823)
+... ++ ...+++|+|.+++||+||+|+| |||+|+|+.+..| |
T Consensus 451 ~~~~------~~------------------~~~~~~kla~~ll~t~pGiP~I-YYGdE~G~~g~~d-p------------ 492 (598)
T PRK10785 451 FKTL------LG------------------GDKARMPLALVWLFTWPGVPCI-YYGDEVGLDGGND-P------------ 492 (598)
T ss_pred hhhh------hC------------------CCHHHHHHHHHHHHhCCCCcEE-EeeeeccccCCCC-C------------
Confidence 7532 11 1135778999999999999988 9999999975322 1
Q ss_pred CCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECC
Q 003390 670 PGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFH 744 (823)
Q Consensus 670 ~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~ 744 (823)
.+|++|+|.... ..++|++|+|+|++||+++++|+.|....... +++|+||.| +.++||+|++
T Consensus 493 --------~~R~~m~W~~~~--~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~--~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 493 --------FCRKPFPWDEAK--QDGALLALYQRMIALRKKSQALRRGGCQVLYA--EGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred --------CccCCcCCCccc--CchHHHHHHHHHHHHHhhCcccccCcEEEEEe--CCCEEEEEEECCCCEEEEEEECC
Confidence 268899998653 45699999999999999999999886544332 357999999 5799999998
No 21
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=4.3e-57 Score=527.32 Aligned_cols=445 Identities=19% Similarity=0.284 Sum_probs=286.6
Q ss_pred CCceEEEeecCCCCCC--CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHH
Q 003390 301 KSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 378 (823)
Q Consensus 301 ~~~~IYE~hv~~f~~~--~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~L 378 (823)
++++|||++|++|.+. ++.|+|+|++ ++||||++||||+||||||++++. .+|||++.||++|+|+|||.++||+|
T Consensus 4 ~~~viYqi~~~~f~d~~~~~~Gdl~gi~-~~Ldyl~~LGv~~i~L~Pi~~~~~-~~~gY~~~dy~~vd~~~Gt~~df~~L 81 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGDGIGDFPGLT-SKLDYLKWLGVDALWLLPFFQSPL-RDDGYDVSDYRAILPEFGTIDDFKDF 81 (539)
T ss_pred ccceEEEEehhHhhcCCCCCccCHHHHH-HhHHHHHHCCCCEEEECCCcCCCC-CCCCCCcccccccChhhCCHHHHHHH
Confidence 6799999999999754 4579999999 699999999999999999999875 36999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecccccCCCccccccC---CCCCCCCccccCC---------------CCCcccC------------
Q 003390 379 IDKAHELGLLVLMDIVHSHASNNVLDGLNM---FDGTDGHYFHSGS---------------RGYHWMW------------ 428 (823)
Q Consensus 379 V~~aH~~GI~VIlDvV~NH~~~~~~~~~~~---fdg~~~~yf~~~~---------------~g~~~~w------------ 428 (823)
|++||++||+||||+|+||++.+|++.... .+.....||.... .+..|.|
T Consensus 82 v~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f 161 (539)
T TIGR02456 82 VDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRF 161 (539)
T ss_pred HHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecc
Confidence 999999999999999999999987532211 1111122332100 0111221
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHHHHHh
Q 003390 429 --DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDM 505 (823)
Q Consensus 429 --~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~~~~fl~~~~~~ 505 (823)
+.++||+.||+||++|++++++|++ +||||||||++++|.... | +...+. +..+||+++++.
T Consensus 162 ~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~-~-------------~~~~~~p~~~~f~~~~~~~ 226 (539)
T TIGR02456 162 FSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYERE-G-------------TSCENLPETHEFLKRLRKM 226 (539)
T ss_pred cCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccC-C-------------CccCCCchHHHHHHHHHHH
Confidence 2479999999999999999999998 999999999999885331 1 111222 357899999999
Q ss_pred hhccCCCEEEEEecCCCCCCceeccc-c-----CCcccchhhhHHHHHHHHHHHhhccchhhhhhhHhhhc---cccccc
Q 003390 506 IHGLYPEAVSIGEDVSGMPTFCIPVQ-D-----GGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT---NRRWLE 576 (823)
Q Consensus 506 v~~~~p~~~~igE~~~~~~~~~~~~~-~-----gglgFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~---~~~~~~ 576 (823)
+++.+|++++|||.+. ++..+..+. . -.+.|+|.+...+. ..+... .+..+...+. ...-..
T Consensus 227 v~~~~p~~~~iaE~~~-~~~~~~~y~~~~~~~~~d~~f~f~l~~~~~----~~l~~~----~~~~l~~~l~~~~~~~~~~ 297 (539)
T TIGR02456 227 VDREYPGRMLLAEANQ-WPEEVVAYFGDEGDPECHMAFNFPVMPRIF----MALRRE----DRSPIIDILKETPDIPDSC 297 (539)
T ss_pred HHHhCCCeEEEEEeCC-CHHHHHHhhCCCCCCeeeeEEChhhhhhhh----cccccC----CHHHHHHHHHHhhhccCCC
Confidence 9999999999999853 222222221 1 11245555432221 111110 0111111111 111112
Q ss_pred cceecccCcCcccccccch-------hhhccChhHHHhhhc-CCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCccc
Q 003390 577 KCVAYAESHDQALVGDKTI-------AFWLMDKDMYDFMAL-DRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEF 648 (823)
Q Consensus 577 ~~v~y~enHD~~r~g~~t~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~ 648 (823)
..++|++|||+.|+..-+- +.+..+......... .+.. .......++.|++++++||+||+|+| |||+|+
T Consensus 298 ~~~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~-s~~~~~~~~~kla~~~l~tlpG~P~I-YYG~Ei 375 (539)
T TIGR02456 298 QWCIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLA-PLLDNDRRRIELLTALLLSLPGSPIL-YYGDEI 375 (539)
T ss_pred ceeeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhh-hcccccHHHHHHHHHHHHhCCCceEE-Eechhh
Confidence 3467999999976421000 000000000000000 0000 00112245679999999999999888 999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccc--------------------------------cccchHH
Q 003390 649 GHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDAD--------------------------------YLRYRGM 696 (823)
Q Consensus 649 G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~--------------------------------~~~~~~l 696 (823)
||.+-.. ..+.+.+|.+|+|.... .....++
T Consensus 376 Gm~~~~~-----------------~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sl 438 (539)
T TIGR02456 376 GMGDNIW-----------------LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSL 438 (539)
T ss_pred cCcCCCc-----------------cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccH
Confidence 9964110 01122345555554321 1234689
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccC-Cc-eEEEEEeCCC
Q 003390 697 QEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLK-PG-KYKIVLDSDD 770 (823)
Q Consensus 697 ~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~v~~-~g-~~~~vl~sd~ 770 (823)
++|||+||+||+++++|..|...... ..+++|++|.| +.++||+|++. + ...+.|.++. .| .+.++++++.
T Consensus 439 l~~yr~Li~lRk~~~aL~~G~~~~l~-~~~~~v~~f~R~~~~~~vlVv~N~s~-~-~~~v~l~~~~~~~~~~~dl~~~~~ 515 (539)
T TIGR02456 439 LHWTRRVLHVRKAHPAFGRGSLTFLP-TGNRRVLAFLREYEGERVLCVFNFSR-N-PQAVELDLSEFAGRVPVELIGGAP 515 (539)
T ss_pred HHHHHHHHHHHhcCcccccCceEEEe-cCCCCEEEEEEEcCCcEEEEEEeCCC-C-CEEeeccccccccCcceecccCCc
Confidence 99999999999999999988644332 23457999999 57999999994 2 3345554332 12 3455543221
Q ss_pred CCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEEE
Q 003390 771 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 813 (823)
Q Consensus 771 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~ 813 (823)
... ...+.++|+|||+++++|++
T Consensus 516 --------------~~~------~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 516 --------------FPP------VGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred --------------ccc------ccCCcceEEECCceEEEEEe
Confidence 000 00112789999999999984
No 22
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.1e-55 Score=513.91 Aligned_cols=451 Identities=17% Similarity=0.238 Sum_probs=295.4
Q ss_pred CCCCceEEEeecCCCCC--CCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHH
Q 003390 299 KPKSLRIYEAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK 376 (823)
Q Consensus 299 ~~~~~~IYE~hv~~f~~--~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk 376 (823)
+.+..+|||+++++|.. .++.|+|+|++ ++||||++||||+||||||++++. ..|||++.||++|+|+|||.+||+
T Consensus 7 W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~-~~ldyl~~lGv~~i~l~P~~~~~~-~~~gY~~~d~~~id~~~Gt~~d~~ 84 (551)
T PRK10933 7 WWQNGVIYQIYPKSFQDTTGSGTGDLRGVT-QRLDYLQKLGVDAIWLTPFYVSPQ-VDNGYDVANYTAIDPTYGTLDDFD 84 (551)
T ss_pred hhhcCeEEEEEchHhhcCCCCCCcCHHHHH-HhhHHHHhCCCCEEEECCCCCCCC-CCCCCCcccCCCcCcccCCHHHHH
Confidence 34779999999999964 35679999999 699999999999999999998775 358999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCC--Cccc--c------------CCCCCcccCC-----------
Q 003390 377 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDG--HYFH--S------------GSRGYHWMWD----------- 429 (823)
Q Consensus 377 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~--~yf~--~------------~~~g~~~~w~----------- 429 (823)
+||++||++||+||||+|+||++.+|++.....+...+ .||. . ...+..|.|+
T Consensus 85 ~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f 164 (551)
T PRK10933 85 ELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLF 164 (551)
T ss_pred HHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecc
Confidence 99999999999999999999999988543222111111 1221 0 0011223332
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhh
Q 003390 430 ---SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMI 506 (823)
Q Consensus 430 ---~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v 506 (823)
.++||+.||+|+++|+++++||++ +||||||||+|++|... .+++.........++ ....+..+||+++++.+
T Consensus 165 ~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 240 (551)
T PRK10933 165 APEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKD-QDFPDDLDGDGRRFY--TDGPRAHEFLQEMNRDV 240 (551)
T ss_pred cccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcC-CCCCCCccccccccc--CCChHHHHHHHHHHHHh
Confidence 579999999999999999999997 99999999999998643 122111101111111 11234578999998776
Q ss_pred hccCCCEEEEEecCCCCCCceeccc--cC---CcccchhhhHHHHHHHHHHHhhc---cchhhhhhhHhh-------hcc
Q 003390 507 HGLYPEAVSIGEDVSGMPTFCIPVQ--DG---GVGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHT-------MTN 571 (823)
Q Consensus 507 ~~~~p~~~~igE~~~~~~~~~~~~~--~g---glgFd~~~~~~~~d~~~~~l~~~---~~~~~~~~~~~~-------l~~ 571 (823)
.. .+++++|||.|...+..+..+. .+ .+.|+|... ...++... ...+....+... +..
T Consensus 241 ~~-~~~~~~vgE~~~~~~~~~~~y~~~~~~~~~~~fnf~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (551)
T PRK10933 241 FT-PRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFNFHHL------KVDYPNGEKWTLAKPDFVALKTLFRHWQQGMHN 313 (551)
T ss_pred hc-ccCcEEEEeecCCCHHHHHHhhcccCCeeeeEecHHHh------hhhhccCCcccccccCHHHHHHHHHHHHHhhcc
Confidence 43 3478999999865443333332 11 134555311 11111110 011111111111 111
Q ss_pred ccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCC
Q 003390 572 RRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHP 651 (823)
Q Consensus 572 ~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~ 651 (823)
..| ...|++|||+.|+..+. ..+. ....+.+|++.+++||+||+|+| |||+|+||.
T Consensus 314 ~~~---~~~fl~NHD~~R~~sr~----g~~~----------------~~~~~~aklla~ll~tlpG~P~I-YyGeEiGm~ 369 (551)
T PRK10933 314 VAW---NALFWCNHDQPRIVSRF----GDEG----------------EYRVPAAKMLAMVLHGMQGTPYI-YQGEEIGMT 369 (551)
T ss_pred cCe---eccccCCCCcccHHHHc----CCch----------------hHHHHHHHHHHHHHHhCCCceEE-EeecccCCC
Confidence 122 25689999999875321 0000 11234578889999999999988 999999997
Q ss_pred CCCCCCCC-CCCCCCCC----------------cCCCCCCCCcccCcccCCCcccc------------------------
Q 003390 652 EWIDFPRG-DQRLPNGQ----------------FVPGNNFSYDKCRRRFDLGDADY------------------------ 690 (823)
Q Consensus 652 ~~~d~p~~-~~~~~~~~----------------~~~gn~~s~~~~r~~~~w~~~~~------------------------ 690 (823)
+. .+++. +-.++... ...-+..+++.+|.+|+|....+
T Consensus 370 ~~-~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q 448 (551)
T PRK10933 370 NP-HFTRITDYRDVESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAA 448 (551)
T ss_pred CC-CCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHH
Confidence 62 22110 00110000 00112347888999999987542
Q ss_pred -ccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccCCceEEEE
Q 003390 691 -LRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIV 765 (823)
Q Consensus 691 -~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~v 765 (823)
....++++|||+||+|||++++|..|..... ....++|++|.| +.++||+|++. ....+.++ ...+.|+.+
T Consensus 449 ~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~-~~~~~~v~af~R~~~~~~~lvv~N~s~--~~~~~~~~-~~~~~~~~~ 524 (551)
T PRK10933 449 LADEDSVFYTYQKLIALRKQEPVLTWGDYQDL-LPNHPSLWCYRREWQGQTLLVIANLSR--EPQPWQPG-QMRGNWQLL 524 (551)
T ss_pred hcCcccHHHHHHHHHHHhhcChhhccceeEEe-ccCCCcEEEEEEEcCCcEEEEEEECCC--CCeeeecC-cccCCceEE
Confidence 1236899999999999999999998864432 223457999999 57999999993 23334443 224678888
Q ss_pred EeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEEE
Q 003390 766 LDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYAL 813 (823)
Q Consensus 766 l~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~ 813 (823)
+++.... . .. ...++|||.++.|++.
T Consensus 525 l~~~~~~------------~--------~~--~~~~~L~p~~~~~~~~ 550 (551)
T PRK10933 525 MHNYEEA------------S--------PQ--PCAMTLRPFEAVWWLQ 550 (551)
T ss_pred eecCccc------------c--------CC--CCcEEECCCeEEEEEe
Confidence 7642110 0 00 0348899999999875
No 23
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-55 Score=507.25 Aligned_cols=552 Identities=20% Similarity=0.296 Sum_probs=354.9
Q ss_pred cccCCcEE---cCCcEEEEEecCCcCeEEEEe-ecCCCCCc--ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003390 179 YEKFGFIR---SDTGITYREWAPGAKSASLIG-DFNNWNPN--ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 252 (823)
Q Consensus 179 y~~lG~~~---~~~gv~fr~WAP~A~~V~L~g-dfN~w~~~--~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~ 252 (823)
..++|+++ ...|+.|.+|+.+|+.|.|+. |...-... .+++....+.+|++.+|+... |+.|.|++.
T Consensus 17 ~~plga~~~~~~~~g~~f~l~s~~a~~v~l~l~d~~~~~~~~~~~~~~~~~G~iw~~~~p~~~~-------g~~y~yr~~ 89 (697)
T COG1523 17 PYPLGATVIDIDGDGVNFALFSSHAERVELCLFDEAGNTEEGRLYPYDGELGAIWHLWLPGAKP-------GQVYGYRVH 89 (697)
T ss_pred cccccceeeeccCcceEEeeeccccceEEEEecCcccccccccccccCCccccEEEEEcCCCce-------eeEEEEecC
Confidence 35899997 458999999999999999995 22211111 156766667799999998665 668999987
Q ss_pred CCC----C-----cccccCccceeeccCCCC-------------------------CCCCcEEeCCCccccccccCCC-C
Q 003390 253 TPS----G-----IKDSIPAWIKFSVQAPGE-------------------------IPYNGIYYDPPEEEKYVFQHPQ-P 297 (823)
Q Consensus 253 ~~~----~-----~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~d~~~~~~~~~~~~~-~ 297 (823)
++. | .+..++||++........ ...++++.++. +.|+.++ |
T Consensus 90 g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~Ksvv~~~~----~~w~~~~~~ 165 (697)
T COG1523 90 GPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPYPKSVVIDPL----FDWENDKPP 165 (697)
T ss_pred CCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccCCceEEeccc----cccccCCCC
Confidence 642 1 134567888654432210 01245555553 7787654 3
Q ss_pred CCC-CCceEEEeecCCCC-CCC-----CCCCHHhhHhhh--hhhHHHcCCCEEEECCcccCC---------CCCCCCCcc
Q 003390 298 KKP-KSLRIYEAHVGMSS-TEP-----IINTYANFRDDV--LPRIKRLGYNAVQIMAVQEHS---------YYASFGYHV 359 (823)
Q Consensus 298 ~~~-~~~~IYE~hv~~f~-~~~-----~~G~~~~~~~~~--L~yLk~LGvt~I~L~Pi~e~~---------~~~~~GY~~ 359 (823)
..| ++++|||+|||+|| .++ ..|||.+++ +. |+|||+||||||+||||+++. ...+|||+|
T Consensus 166 ~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~-~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 166 RIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLA-EPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCccceEEEEeeecccccCCCCCchhhccceehhc-cccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 334 88999999999998 443 459999999 46 999999999999999999863 245799999
Q ss_pred ccccCcCCCCCC-------HHHHHHHHHHHHHcCCEEEEEecccccCCCc-cccccCCCCCCCCccc-cCCCCCc--ccC
Q 003390 360 TNFFAPSSRCGT-------PDDLKSLIDKAHELGLLVLMDIVHSHASNNV-LDGLNMFDGTDGHYFH-SGSRGYH--WMW 428 (823)
Q Consensus 360 ~~~~a~~~~~Gt-------~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~-~~~~~~fdg~~~~yf~-~~~~g~~--~~w 428 (823)
.+||+|+++|.+ ..|||.||+++|++||+||||||+|||+... ......|+|.++.||+ ..+.|+. +..
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TG 324 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTG 324 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCc
Confidence 999999999986 4599999999999999999999999998642 2334578998887554 4444443 444
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhc
Q 003390 429 DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHG 508 (823)
Q Consensus 429 ~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~ 508 (823)
+.+.+|.++|+||++|+|+|+||++||||||||||.|+.+.....+. +..+ .++..+. -..
T Consensus 325 cGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~----------------~~~~-~l~~~~~--~~p 385 (697)
T COG1523 325 CGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLF----------------DINA-NLFLAGE--GDP 385 (697)
T ss_pred cCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccccc----------------ccCc-chhhhcc--CCc
Confidence 56899999999999999999999999999999999998774431100 0000 0111110 001
Q ss_pred cCCCEEEEEecCCCCCCceeccccCCcccc--hhh---hHHHHHHHHHHHhhccchhhhhhhHhhhcc--------cccc
Q 003390 509 LYPEAVSIGEDVSGMPTFCIPVQDGGVGFD--YRL---QMAIADKWIELLKKRDEDWKMGAIVHTMTN--------RRWL 575 (823)
Q Consensus 509 ~~p~~~~igE~~~~~~~~~~~~~~gglgFd--~~~---~~~~~d~~~~~l~~~~~~~~~~~~~~~l~~--------~~~~ 575 (823)
..-+.-+|||.|.-.+. .++-|. |. +++ +-.+.+..+.++.+... ..+.+...+.. .+-+
T Consensus 386 ~l~~~kliAepwD~g~~---gyqvG~--Fpd~~~~aewng~~rD~vr~F~~G~~~--~~~~~a~rl~gS~d~~~~~~~~p 458 (697)
T COG1523 386 VLSGVKLIAEPWDIGPG---GYQVGN--FPDSPRWAEWNGRFRDDVRRFWRGDAG--LVGEFAKRLAGSSDLYKRNGRRP 458 (697)
T ss_pred cccCceeeecchhhcCC---Cccccc--CCCccchhhhCCcccccccceeeCCCc--cHHHHHHHhhcCcchhhccCCCc
Confidence 12244588888854331 122222 33 221 22222223333332211 11122222221 2335
Q ss_pred ccceecccCcCcccccccchhhhccC---hhHHH-----h-----hhcCCCCCcchhhHHHHHH-HHHHHHHhCCCcceE
Q 003390 576 EKCVAYAESHDQALVGDKTIAFWLMD---KDMYD-----F-----MALDRPSTPRIDRGIALHK-MIRLVTMGLGGEAYL 641 (823)
Q Consensus 576 ~~~v~y~enHD~~r~g~~t~~~~~~~---~~~~~-----~-----~~~~~~~~~~~~~~~a~~k-~a~~l~ltlpG~p~l 641 (823)
.++|||+.+||.-++.|...-....+ .+..+ . +.....+.+.+..+.+..+ .+.+.++...|+|.+
T Consensus 459 ~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml 538 (697)
T COG1523 459 SQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPML 538 (697)
T ss_pred cceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCccc
Confidence 78999999999998765321111111 11000 0 1111233444443333333 333456778899755
Q ss_pred eecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcc--cCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCC-cE
Q 003390 642 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDK--CRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSE-HQ 718 (823)
Q Consensus 642 ~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~--~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g-~~ 718 (823)
-+|+|+|+..+ ||+++|+. ..+.++|. . ..++.+.+|.+.||+|||++++++.. +.
T Consensus 539 -~~gDe~~rtq~-----------------gnnNsYcqdn~inwlDW~-~--~~~~~l~~f~~~lIaLRk~~~af~~~~f~ 597 (697)
T COG1523 539 -LAGDEFGRTQY-----------------GNNNAYCQDNEINWLDWS-T--EANNDLVEFTKGLIALRKAHPAFRRRSFF 597 (697)
T ss_pred -ccccccccccc-----------------cccccccCCcccceeccC-c--cccHHHHHHHHHHHHHhhhcchhcccchh
Confidence 99999999663 88999975 45688888 2 46789999999999999999987652 11
Q ss_pred ----------EE----------EeecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcC
Q 003390 719 ----------YV----------SRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFG 774 (823)
Q Consensus 719 ----------~i----------~~~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~g 774 (823)
|+ .+.......+++.. ++++|++|..+ ....++++... ++|..++++....
T Consensus 598 ~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~~l~~~l~~~~~~~lv~~N~~~--~~~~~~lp~~~-~~~~~~~~~~~~~-- 672 (697)
T COG1523 598 EGKRGVKDITWLNWNGIPLTQDDWNNGFTGALAVVLDGDKERLLVLINATA--EPVEFELPEDE-GKWAGLVDTSTPP-- 672 (697)
T ss_pred hccCCCcccceeccCCeeechhcccCCCCceEEEEecCCCccEEEEecCCc--cccceeccccc-CcceeeecccCCC--
Confidence 11 01112233455544 37999999763 34456776443 6687777653221
Q ss_pred CccccCCCccccccccccCCCCeEEEEEEcCceEEEEEEc
Q 003390 775 GYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALA 814 (823)
Q Consensus 775 G~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~ 814 (823)
+. . ..++.++++|+.||...
T Consensus 673 ~~----------------~----~~~~~~~~~s~~vl~~~ 692 (697)
T COG1523 673 GF----------------D----IREVSLPGRSVLVLTRR 692 (697)
T ss_pred Cc----------------c----cceeecCCcEEEEEeec
Confidence 00 0 01588999999998753
No 24
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.7e-55 Score=512.96 Aligned_cols=450 Identities=17% Similarity=0.203 Sum_probs=291.4
Q ss_pred CCceEEEeecCCCCCC--CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHH
Q 003390 301 KSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 378 (823)
Q Consensus 301 ~~~~IYE~hv~~f~~~--~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~L 378 (823)
+..+|||+|+++|+.. ++.|+|+|++ ++|+||++||||+|||+||++++. ..+||+++||++|+|+|||.++|++|
T Consensus 3 ~~~v~Y~i~~~~f~~~~~~~~G~~~gi~-~~l~yl~~lG~~~i~l~Pi~~~~~-~~~gY~~~d~~~id~~~Gt~~~~~~l 80 (543)
T TIGR02403 3 QKKVIYQIYPKSFYDSTGDGTGDLRGII-EKLDYLKKLGVDYIWLNPFYVSPQ-KDNGYDVSDYYAINPLFGTMADFEEL 80 (543)
T ss_pred ccCEEEEEEhHHHhcCCCCCccCHHHHH-HhHHHHHHcCCCEEEECCcccCCC-CCCCCCccccCccCcccCCHHHHHHH
Confidence 5689999999999753 4679999999 699999999999999999999875 34799999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecccccCCCccccccCC--CCCCCCcccc-CC------------CCCcccC--------------C
Q 003390 379 IDKAHELGLLVLMDIVHSHASNNVLDGLNMF--DGTDGHYFHS-GS------------RGYHWMW--------------D 429 (823)
Q Consensus 379 V~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f--dg~~~~yf~~-~~------------~g~~~~w--------------~ 429 (823)
|++||++||+||||+|+||++.+|.+..... ++....||.. .. .+..|.| +
T Consensus 81 v~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~ 160 (543)
T TIGR02403 81 VSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKT 160 (543)
T ss_pred HHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCc
Confidence 9999999999999999999999885322111 1111122211 00 0111222 2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhcc
Q 003390 430 SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 509 (823)
Q Consensus 430 ~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~ 509 (823)
.++||++||+|+++|+++++||++ +||||||||+|++|.... .+...-... ...+ ........+||+++++.+++
T Consensus 161 ~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~-~~~~~~~~~-~~~~-~~~~~~~~~f~~~~~~~~~~- 235 (543)
T TIGR02403 161 QADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQ-FFEDDEIGD-GRRF-YTDGPRVHEYLQEMNQEVFG- 235 (543)
T ss_pred CCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCc-ccCCCCCCC-Cccc-cCCChHHHHHHHHHHHHhhc-
Confidence 489999999999999999999998 899999999999985331 010000000 0000 01123467899999999988
Q ss_pred CCCEEEEEecCCCCCCceecccc-CC----cccchhhhHHHHHHHHHHHhhc---cchhhhhhhHhhhc----ccc-ccc
Q 003390 510 YPEAVSIGEDVSGMPTFCIPVQD-GG----VGFDYRLQMAIADKWIELLKKR---DEDWKMGAIVHTMT----NRR-WLE 576 (823)
Q Consensus 510 ~p~~~~igE~~~~~~~~~~~~~~-gg----lgFd~~~~~~~~d~~~~~l~~~---~~~~~~~~~~~~l~----~~~-~~~ 576 (823)
.|++++|||.|...+..+..+.. .+ +.|+|.. ....+.... ...+....+...+. ... ...
T Consensus 236 ~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d~~~nf~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (543)
T TIGR02403 236 DNDSVTVGEMSSTTIENCIRYSNPENKELSMVFTFHH------LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQAGGG 309 (543)
T ss_pred cCCeEEEEEeCCCCHHHHHhhhCCCCCeeCeEEChhh------hhchhccccccccCCCCHHHHHHHHHHHHHhccccCc
Confidence 89999999999755443333322 11 2244431 001111110 00111111111110 000 112
Q ss_pred cceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCC
Q 003390 577 KCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDF 656 (823)
Q Consensus 577 ~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~ 656 (823)
..++|++|||++|+..+. +. + . ....+.+|++++++||+||+|+| |||+|+||.+.. .
T Consensus 310 ~~~~fl~NHD~~R~~s~~------g~--------~-~-----~~~~~~~k~~a~ll~tlpG~P~I-YYGdEiGm~~~~-~ 367 (543)
T TIGR02403 310 WNALFWNNHDQPRAVSRF------GD--------D-G-----EYRVESAKMLAAAIHLLRGTPYI-YQGEEIGMTNPK-F 367 (543)
T ss_pred ceeeecCCCChhhHHHhc------CC--------c-h-----hhHHHHHHHHHHHHHHCCCCeEE-EeccccCCCCCC-C
Confidence 235799999999875321 10 0 0 00123568888899999999988 999999997631 1
Q ss_pred CCC-CCCCCCCCc----------------CCCCCCCCcccCcccCCCcccc-------------------------ccch
Q 003390 657 PRG-DQRLPNGQF----------------VPGNNFSYDKCRRRFDLGDADY-------------------------LRYR 694 (823)
Q Consensus 657 p~~-~~~~~~~~~----------------~~gn~~s~~~~r~~~~w~~~~~-------------------------~~~~ 694 (823)
+.. +-.++.... ..-+..+++.+|.+|+|..... ....
T Consensus 368 ~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~ 447 (543)
T TIGR02403 368 TNIEDYRDVESLNAYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDN 447 (543)
T ss_pred CCHHHhcCHHHHHHHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCc
Confidence 100 000000000 0012346788999999986421 1246
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCC
Q 003390 695 GMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDD 770 (823)
Q Consensus 695 ~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~ 770 (823)
++++|||+||+|||++++|..|...... ..+++|++|.| +.++||+|++. ....+.|+.. .+.++.++++..
T Consensus 448 Sll~~yr~Li~lRk~~~aL~~G~~~~~~-~~~~~v~a~~R~~~~~~~lVv~N~s~--~~~~~~l~~~-~~~~~~~~~~~~ 523 (543)
T TIGR02403 448 SIFYFYQKLIALRKSEPVITDGDYQFLL-PDDPSVWAYTRTYKNQKLLVINNFYG--EEKTIELPLD-LLSGKILLSNYE 523 (543)
T ss_pred cHHHHHHHHHHHHhhcccccCccEEEee-cCCCcEEEEEEEcCCcEEEEEEECCC--CCeEeeCCcc-CcCceEEEecCC
Confidence 8999999999999999999988644322 23346999999 47999999993 2334444321 234556665422
Q ss_pred CCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEE
Q 003390 771 PLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 812 (823)
Q Consensus 771 ~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~ 812 (823)
... . ...+.|||++++|+.
T Consensus 524 ~~~-------------------~----~~~~~L~p~~~~i~~ 542 (543)
T TIGR02403 524 EAE-------------------K----DAKLELKPYEAIVLL 542 (543)
T ss_pred CcC-------------------C----CCcEEECCceEEEEe
Confidence 100 0 044899999999985
No 25
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.1e-51 Score=484.54 Aligned_cols=364 Identities=17% Similarity=0.220 Sum_probs=246.6
Q ss_pred CCCCceEEEeecCCCCCCC------------C--------CCCHHhhHhhhhhhHHHcCCCEEEECCcccCC--------
Q 003390 299 KPKSLRIYEAHVGMSSTEP------------I--------INTYANFRDDVLPRIKRLGYNAVQIMAVQEHS-------- 350 (823)
Q Consensus 299 ~~~~~~IYE~hv~~f~~~~------------~--------~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~-------- 350 (823)
..+..+||++.+..|.+.+ + -|+|+||+ ++||||++||||+|||+||+++.
T Consensus 186 ~W~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~-~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~ 264 (683)
T PRK09505 186 DWHNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLT-EKLDYLQQLGVNALWISSPLEQIHGWVGGGT 264 (683)
T ss_pred hhccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHH-HhhHHHHHcCCCEEEeCcccccccccccccc
Confidence 3477899999998884221 1 28999999 69999999999999999999872
Q ss_pred -----CCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcccccc--CCC-----------CC
Q 003390 351 -----YYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN--MFD-----------GT 412 (823)
Q Consensus 351 -----~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~--~fd-----------g~ 412 (823)
.+++|||++.||+.|+++|||.+|||+||++||++||+||||+|+||++..+..... .|. +.
T Consensus 265 ~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~ 344 (683)
T PRK09505 265 KGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTL 344 (683)
T ss_pred ccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcccccccc
Confidence 357899999999999999999999999999999999999999999999953210000 000 00
Q ss_pred ----------CCCccccC--------CCCCccc----C---------------------CCCCCCCC-------------
Q 003390 413 ----------DGHYFHSG--------SRGYHWM----W---------------------DSRLFNYG------------- 436 (823)
Q Consensus 413 ----------~~~yf~~~--------~~g~~~~----w---------------------~~~~ln~~------------- 436 (823)
.+.+|+.. ....... | ..++||.+
T Consensus 345 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~ 424 (683)
T PRK09505 345 GERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYAN 424 (683)
T ss_pred CcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhc
Confidence 01111110 0001101 1 13555554
Q ss_pred ----------CHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhh
Q 003390 437 ----------SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMI 506 (823)
Q Consensus 437 ----------~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v 506 (823)
||+|+++|++++++|++++||||||+|+|++|. .+||++++..+
T Consensus 425 ~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~--------------------------~~FW~~~~~~~ 478 (683)
T PRK09505 425 KPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVE--------------------------LPAWQQLKQEA 478 (683)
T ss_pred CcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCC--------------------------HHHHHHHHHHH
Confidence 569999999999999999999999999999882 24677776655
Q ss_pred -------hccCC-------CEEEEEecCCCCCCceeccccCCc--ccchhhhHHHHHHHHHHHhhccchhhhhhhHhhhc
Q 003390 507 -------HGLYP-------EAVSIGEDVSGMPTFCIPVQDGGV--GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT 570 (823)
Q Consensus 507 -------~~~~p-------~~~~igE~~~~~~~~~~~~~~ggl--gFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~ 570 (823)
++.+| ++++|||.|...+... .+...++ .|||.+.....+ ....+... ..++..+.
T Consensus 479 ~~~l~~~k~~~~d~~~~~~~~~~vGEvw~~~~~~~-~y~~~~fDsv~NF~~~~~~~~-~~~~~~~l------~~~~~~~~ 550 (683)
T PRK09505 479 SAALAEWKKANPDKALDDAPFWMTGEAWGHGVMKS-DYYRHGFDAMINFDYQEQAAK-AVDCLAQM------DPTYQQMA 550 (683)
T ss_pred HHHHHHHHHhccccccccCCeEEEEEecCCchhhH-HHHhhcCccccCchHHHHHHH-HHHHHHHH------HHHHHHHh
Confidence 33344 4899999996544322 2222221 244433322211 11111111 11111111
Q ss_pred cccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCC
Q 003390 571 NRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGH 650 (823)
Q Consensus 571 ~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~ 650 (823)
...-....++|++|||+.|+.... . ..+++|+|++++||+||+|+| |||+|+||
T Consensus 551 ~~~~~~~~l~FLdNHDt~Rf~s~~------~-------------------~~~~~klAaall~tlpGiP~I-YYGdEiGm 604 (683)
T PRK09505 551 EKLQDFNVLSYLSSHDTRLFFEGG------Q-------------------SYAKQRRAAELLLLAPGAVQI-YYGDESAR 604 (683)
T ss_pred hhcCccceeecccCCChhhhhhhc------C-------------------chHHHHHHHHHHHhCCCCcEE-EechhhCc
Confidence 111112357899999999875321 0 014678899999999999988 99999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEE
Q 003390 651 PEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVI 730 (823)
Q Consensus 651 ~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vl 730 (823)
..... .......+|++|+|.+.. ....+|++|+|+|++||+++++|+.|..... ..++++
T Consensus 605 ~gg~~----------------g~DP~~~~R~~M~W~~~~-~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l---~~~~~~ 664 (683)
T PRK09505 605 PFGPT----------------GSDPLQGTRSDMNWQEVS-GKSAALLAHWQKLGQFRARHPAIGAGKQTTL---SLKQYY 664 (683)
T ss_pred cCCCC----------------CCCCcccccccCCccccc-cchHHHHHHHHHHHHHHhhCHHhhCCceEEe---ccCCEE
Confidence 64210 011222488999998532 2456899999999999999999999965442 235799
Q ss_pred EEEc----CcEEEEEEC
Q 003390 731 VFER----GNLVFVFNF 743 (823)
Q Consensus 731 af~R----~~llvv~Nf 743 (823)
+|.| +.++||+|-
T Consensus 665 aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 665 AFVREHGDDKVMVVWAG 681 (683)
T ss_pred EEEEEeCCCEEEEEEeC
Confidence 9999 478999884
No 26
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=3.1e-50 Score=464.02 Aligned_cols=375 Identities=17% Similarity=0.185 Sum_probs=258.7
Q ss_pred CCHHhhHhhhhhhHHHcCCCEEEECCcccCCC-CCCCCCcccccc---------CcCCCCCCHHHHHHHHHHHHHcCCEE
Q 003390 320 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-YASFGYHVTNFF---------APSSRCGTPDDLKSLIDKAHELGLLV 389 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~-~~~~GY~~~~~~---------a~~~~~Gt~edlk~LV~~aH~~GI~V 389 (823)
.+|++|+ ++||||++||||+|||+||++++. ..+|||++.||| +|+|+|||.+|||+||++||++||+|
T Consensus 19 ~~~~~I~-~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 19 KLWNRLA-ERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred cHHHHHH-HHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 4677899 699999999999999999999874 356999999999 79999999999999999999999999
Q ss_pred EEEecccccCCCcc--ccc----------------------cCCC--CCC-------CCccccCCC--------------
Q 003390 390 LMDIVHSHASNNVL--DGL----------------------NMFD--GTD-------GHYFHSGSR-------------- 422 (823)
Q Consensus 390 IlDvV~NH~~~~~~--~~~----------------------~~fd--g~~-------~~yf~~~~~-------------- 422 (823)
|||+|+||++.... +.. ..|+ +.. ..|++..+.
T Consensus 98 i~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (479)
T PRK09441 98 YADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKI 177 (479)
T ss_pred EEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEe
Confidence 99999999986432 110 0010 100 012221110
Q ss_pred ---CCccc--C----------CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCccccc
Q 003390 423 ---GYHWM--W----------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYF 487 (823)
Q Consensus 423 ---g~~~~--w----------~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~ 487 (823)
...|. | ..++||++||+|+++|++++++|++++||||||+|+|++|.
T Consensus 178 ~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~------------------ 239 (479)
T PRK09441 178 VGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID------------------ 239 (479)
T ss_pred cCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC------------------
Confidence 01121 1 14799999999999999999999999999999999999882
Q ss_pred CcccChhHHHHHHHHHHhhhccC-CCEEEEEecCCCCCCceeccccC----CcccchhhhHHHHHHHHHHHhhccchhhh
Q 003390 488 GFATDVDAVVYLMLVNDMIHGLY-PEAVSIGEDVSGMPTFCIPVQDG----GVGFDYRLQMAIADKWIELLKKRDEDWKM 562 (823)
Q Consensus 488 g~~~d~~~~~fl~~~~~~v~~~~-p~~~~igE~~~~~~~~~~~~~~g----glgFd~~~~~~~~d~~~~~l~~~~~~~~~ 562 (823)
..||+.+.+.+++.. |++++|||.|.+.+..+..+..+ ...|||.++..+.+.+.. . ....+
T Consensus 240 --------~~f~~~~~~~~~~~~~~~~~~vGE~~~~~~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~---~--~~~~l 306 (479)
T PRK09441 240 --------AWFIKEWIEHVREVAGKDLFIVGEYWSHDVDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQ---G--RDYDM 306 (479)
T ss_pred --------HHHHHHHHHHHHHhcCCCeEEEEeecCCChHHHHHHHHhcCCCceEecHHHHHHHHHHHhc---C--Cccch
Confidence 348899999988765 68999999998776544444432 135899887766543321 1 11122
Q ss_pred hhhHhhhccccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCC-CcceE
Q 003390 563 GAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYL 641 (823)
Q Consensus 563 ~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlp-G~p~l 641 (823)
..+.........+.+.++|++|||+.|+.... +. ......++|.+++||+| |+|+|
T Consensus 307 ~~~~~~~~~~~~~~~~~~FldNHD~~R~~~~~------~~-----------------~~~~~~~lA~a~llT~p~GiP~I 363 (479)
T PRK09441 307 RNIFDGTLVEADPFHAVTFVDNHDTQPGQALE------SP-----------------VEPWFKPLAYALILLREEGYPCV 363 (479)
T ss_pred HhhhCcchhhcCcccceeeeccccCCCccccc------cc-----------------ccccchHHHHHHHHhCCCCceee
Confidence 22221111123455678999999999975310 00 00112468899999999 99988
Q ss_pred eecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEE
Q 003390 642 NFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVS 721 (823)
Q Consensus 642 ~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~ 721 (823)
|||+|+|+.+..+ ...+++++++|++||+++. .|.....
T Consensus 364 -YYGdE~g~~g~~~-------------------------------------~~~l~~~i~~Li~lRk~~~---~G~~~~~ 402 (479)
T PRK09441 364 -FYGDYYGASGYYI-------------------------------------DMPFKEKLDKLLLARKNFA---YGEQTDY 402 (479)
T ss_pred -EeccccCCCCCcc-------------------------------------cchHHHHHHHHHHHHHHhC---CCCeeEe
Confidence 9999999854100 1358999999999999864 4443332
Q ss_pred eecCCCcEEEEEc------CcEEEEEECCCCCcccceEEccc-CCceEEEEEeCCCCCcCCccccCCCccccccccccCC
Q 003390 722 RKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCL-KPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDD 794 (823)
Q Consensus 722 ~~~~~~~Vlaf~R------~~llvv~Nf~~~~~~~~~~l~v~-~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~ 794 (823)
..+++++||.| +.++||+|.+. .+...+.++.. ..+.|++++..... .+. ..
T Consensus 403 --~~~~~~~~~~R~~~~~~~~vvvvinn~~-~~~~~~~~~~~~~~~~~~d~~~~~~~------------~~~------~~ 461 (479)
T PRK09441 403 --FDHPNCIGWTRSGDEENPGLAVVISNGD-AGEKTMEVGENYAGKTWRDYTGNRQE------------TVT------ID 461 (479)
T ss_pred --ecCCCEEEEEEecCCCCccEEEEEECCC-CCcEEEEeCccCCCCEeEhhhCCCCC------------eEE------EC
Confidence 24467999999 24888898873 23223555432 23457776642110 010 11
Q ss_pred CCeEEEEEEcCceEEEE
Q 003390 795 QPHSFLVYAPSRTAVVY 811 (823)
Q Consensus 795 ~~~~i~l~lp~~s~~V~ 811 (823)
..+.++++||++++.||
T Consensus 462 ~~G~~~~~l~~~s~~i~ 478 (479)
T PRK09441 462 EDGWGTFPVNGGSVSVW 478 (479)
T ss_pred CCCeEEEEECCceEEEe
Confidence 23468999999999997
No 27
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=3.9e-45 Score=397.27 Aligned_cols=276 Identities=24% Similarity=0.377 Sum_probs=193.8
Q ss_pred CCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 003390 320 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 399 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~ 399 (823)
|||+||+ ++|||||+||||+||||||++.+. .+|||+|+||++|+|+|||.+|||+||++||++||+||||+|+||++
T Consensus 1 Gd~~gi~-~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 1 GDFRGII-DKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SSHHHHH-HTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CCHHHHH-HhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 8999999 699999999999999999999876 78999999999999999999999999999999999999999999999
Q ss_pred CCcccc---ccCCCCCCCCccc-------------cCCCCCccc-----------CCCCCCCCCCHHHHHHHHHHHHHHH
Q 003390 400 NNVLDG---LNMFDGTDGHYFH-------------SGSRGYHWM-----------WDSRLFNYGSWEVLRFLLSNARWWL 452 (823)
Q Consensus 400 ~~~~~~---~~~fdg~~~~yf~-------------~~~~g~~~~-----------w~~~~ln~~~~~V~~~l~~~l~~Wl 452 (823)
.++.+. ...++.....||. ....+..|. .+.++||++||+||++|++++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~ 158 (316)
T PF00128_consen 79 DDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI 158 (316)
T ss_dssp TTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh
Confidence 998542 1112211222222 001111111 1347899999999999999999999
Q ss_pred HhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCCceeccc-
Q 003390 453 EEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPTFCIPVQ- 531 (823)
Q Consensus 453 ~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~~~~~~~- 531 (823)
+ +||||||||++++|. .++|++++..+++..|++++|||.+.+....+....
T Consensus 159 ~-~giDGfR~D~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~ 211 (316)
T PF00128_consen 159 E-EGIDGFRLDAAKHIP--------------------------KEFWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAY 211 (316)
T ss_dssp H-TTESEEEETTGGGSS--------------------------HHHHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHH
T ss_pred h-ceEeEEEEccccccc--------------------------hhhHHHHhhhhhhhccccceeeeeccCCccccchhhh
Confidence 9 679999999999883 258999999999988999999999976543222121
Q ss_pred cCCc----ccchhhhHHHHHHHHHHHhhccchhhhhhhHhhh----ccccccccceecccCcCcccccccchhhhccChh
Q 003390 532 DGGV----GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM----TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKD 603 (823)
Q Consensus 532 ~ggl----gFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l----~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~ 603 (823)
.+.. .+++... .+........... ......+...+ .........++|++|||+.|+.....
T Consensus 212 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~-------- 280 (316)
T PF00128_consen 212 DGYFDLDSVFDFPDY-GLRSSFFDFWRHG--DGDASDLANWLSSWQSSYPDPYRAVNFLENHDTPRFASRFG-------- 280 (316)
T ss_dssp HGTTSHSEEEHHHHH-HHHHHHHHHHTTT--SSHHHHHHHHHHHHHHHSTTGGGEEEESSHTTSSTHHHHTT--------
T ss_pred ccccccchhhccccc-ccccchhhhhccc--cchhhhhhhhhhhhhhhhcccceeeecccccccccchhhhc--------
Confidence 1111 1233211 1111111111111 11111111111 11122456799999999998653210
Q ss_pred HHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCC
Q 003390 604 MYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 652 (823)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~ 652 (823)
....+.+++.+++||+||+|+| |||+|+|+.+
T Consensus 281 ----------------~~~~~~~~a~~~ll~~pG~P~i-y~G~E~g~~~ 312 (316)
T PF00128_consen 281 ----------------NNRDRLKLALAFLLTSPGIPMI-YYGDEIGMTG 312 (316)
T ss_dssp ----------------THHHHHHHHHHHHHHSSSEEEE-ETTGGGTBBT
T ss_pred ----------------ccchHHHHHHHHHHcCCCccEE-EeChhccCCC
Confidence 1112678899999999999877 9999999975
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=5.5e-43 Score=393.83 Aligned_cols=316 Identities=19% Similarity=0.266 Sum_probs=219.7
Q ss_pred CCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 319 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 319 ~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
-|.|++|+ ++||||++||||+|||+|++++. ++|||++.|||.++ ++|||.+|||+||++||++||+||+|+|+||
T Consensus 40 gg~~~~i~-~kldyL~~LGvtaIWL~P~~~s~--s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 40 GGWYNFLM-GKVDDIAAAGITHVWLPPPSHSV--SEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred CcCHHHHH-HHHHHHHHcCCCEEEeCCCCCCC--CCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 36899999 69999999999999999999875 36999999999999 6999999999999999999999999999999
Q ss_pred cCCCcccccc---CCCCC----CCCcccc----C------CCCCccc----CCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003390 398 ASNNVLDGLN---MFDGT----DGHYFHS----G------SRGYHWM----WDSRLFNYGSWEVLRFLLSNARWWLEEYK 456 (823)
Q Consensus 398 ~~~~~~~~~~---~fdg~----~~~yf~~----~------~~g~~~~----w~~~~ln~~~~~V~~~l~~~l~~Wl~e~g 456 (823)
++.++.+... .|.+. ...|+.. . ..+.... .+.++||+.||+|+++|+++++||++++|
T Consensus 117 ~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~G 196 (428)
T PLN00196 117 RTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIG 196 (428)
T ss_pred cccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCC
Confidence 9987643211 12221 1122210 0 0011111 13589999999999999999999988899
Q ss_pred ceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCC-----c-----
Q 003390 457 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT-----F----- 526 (823)
Q Consensus 457 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~-----~----- 526 (823)
|||||||+|++|. ..|++++ +++.+| .++|||.|.+... .
T Consensus 197 iDG~RlD~ak~~~--------------------------~~f~~~~---v~~~~p-~f~VGE~W~~~~~~~~~~~~~~~~ 246 (428)
T PLN00196 197 FDAWRLDFAKGYS--------------------------AEVAKVY---IDGTEP-SFAVAEIWTSMAYGGDGKPEYDQN 246 (428)
T ss_pred CCEEEeehhhhCC--------------------------HHHHHHH---HHccCC-cEEEEEEeccccccccCCccccch
Confidence 9999999998873 1366554 444566 7899999975210 0
Q ss_pred -----eecccc--C-----CcccchhhhHHHHHHHHHHHhhccchhhhhhhHhhhc--cccccccceecccCcCcccccc
Q 003390 527 -----CIPVQD--G-----GVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMT--NRRWLEKCVAYAESHDQALVGD 592 (823)
Q Consensus 527 -----~~~~~~--g-----glgFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~v~y~enHD~~r~g~ 592 (823)
+..+.+ + .+.|||.+.... + ..+.+ ..|...+...... ...++.++|+|++|||+.|...
T Consensus 247 ~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~-~---~~~~~--~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~ 320 (428)
T PLN00196 247 AHRQELVNWVDRVGGAASPATVFDFTTKGIL-N---VAVEG--ELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQH 320 (428)
T ss_pred hhHHHHHHHHHhcCCccCcceeecccchHHH-H---HHhcC--CchhhhhhcccCcchhhcChhhceeeccCCCCccccc
Confidence 001111 1 124777654321 1 11111 2232211110011 1346778999999999988632
Q ss_pred cchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCC
Q 003390 593 KTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGN 672 (823)
Q Consensus 593 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn 672 (823)
+ +.. .....++|.+++||+||+||| |||+=
T Consensus 321 --~--~~~--------------------~~~~~~lAyA~iLT~pG~P~I-yYg~~------------------------- 350 (428)
T PLN00196 321 --M--WPF--------------------PSDKVMQGYAYILTHPGNPCI-FYDHF------------------------- 350 (428)
T ss_pred --c--CCC--------------------ccchHHHHHHHHHcCCCcceE-eeCCC-------------------------
Confidence 1 000 012448899999999999999 99831
Q ss_pred CCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc-CcEEEEEECC
Q 003390 673 NFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFH 744 (823)
Q Consensus 673 ~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R-~~llvv~Nf~ 744 (823)
++| .+.+++++|+++||+++++..|...+... ++.|++++| +.++|.+|..
T Consensus 351 ----------~~~---------~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a--~~d~yv~~~~~~~~~~i~~~ 402 (428)
T PLN00196 351 ----------FDW---------GLKEEIAALVSIRNRNGITPTSELRIMEA--DADLYLAEIDGKVIVKIGSR 402 (428)
T ss_pred ----------cCc---------cHHHHHHHHHHHHHhCCCcCCccEEEEEe--cCCEEEEEECCEEEEEECCC
Confidence 223 24458999999999999999987555433 356999999 6789999875
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=3e-41 Score=375.40 Aligned_cols=315 Identities=16% Similarity=0.228 Sum_probs=219.7
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
-|++|+ ++||||++||||+|||+|++++.. +|||++.|||.++++|||.+||++||++||++||+||+|+|+||++.
T Consensus 27 ~w~~i~-~kl~~l~~lG~t~iwl~P~~~~~~--~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLE-GKVPDLAKSGFTSAWLPPPSQSLA--PEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEeCCCCcCCC--CCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 578998 699999999999999999998764 69999999999999999999999999999999999999999999964
Q ss_pred Ccc---ccccCCCCCCCCcccc------CCCCCccc----CCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccccc
Q 003390 401 NVL---DGLNMFDGTDGHYFHS------GSRGYHWM----WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 467 (823)
Q Consensus 401 ~~~---~~~~~fdg~~~~yf~~------~~~g~~~~----w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 467 (823)
... ...+.|+|....|... ...+.... .+.++||+.||+||++|++++++|++++||||||+|+|++
T Consensus 104 ~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 104 TTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred CCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 321 1122344432111110 00111111 1358999999999999999998777779999999999998
Q ss_pred ccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCCCCC---c-------------eeccc
Q 003390 468 MMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSGMPT---F-------------CIPVQ 531 (823)
Q Consensus 468 m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~~~~---~-------------~~~~~ 531 (823)
|. ..|++++.+.+ .| .+++||.|.+... . +..+.
T Consensus 184 ~~--------------------------~~f~~~~~~~~---~p-~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~ 233 (401)
T PLN02361 184 YS--------------------------AKFVKEYIEAA---KP-LFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWI 233 (401)
T ss_pred CC--------------------------HHHHHHHHHhh---CC-eEEEEEEecCCCcCCcccccchhhhhHHHHHHHHH
Confidence 82 34888886654 35 8899999976321 0 11111
Q ss_pred c--CC--cccchhhhHHHHHHHHHHHhhccchhhhhhhHhhh--ccccccccceecccCcCcccccccchhhhccChhHH
Q 003390 532 D--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTM--TNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMY 605 (823)
Q Consensus 532 ~--gg--lgFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~ 605 (823)
. ++ ..|||++...+.+.+. + +.|.+.+..... ....++.++|+|++|||+.|... .|..
T Consensus 234 ~~~~~~~~~fDF~l~~~l~~a~~----~--~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~----~~~~----- 298 (401)
T PLN02361 234 DGTGGLSAAFDFTTKGILQEAVK----G--QWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQA----HWPF----- 298 (401)
T ss_pred HhcCCcceeecHHHHHHHHHHHh----h--hHHHHhhhhcCCcchhhcChhhceEecccCcCcchhh----ccCC-----
Confidence 1 22 2489988777655441 1 123332221110 11346788999999999987521 1111
Q ss_pred HhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCC
Q 003390 606 DFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDL 685 (823)
Q Consensus 606 ~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w 685 (823)
.....++|.+++||+||+||| |||+= ++|
T Consensus 299 ---------------~~~~~~~AyA~iLT~pG~P~V-yyg~~-----------------------------------~~~ 327 (401)
T PLN02361 299 ---------------PSDHIMEGYAYILTHPGIPTV-FYDHF-----------------------------------YDW 327 (401)
T ss_pred ---------------chHHHHHHHHHHHCCCCcCeE-eeccc-----------------------------------cCC
Confidence 123456788999999999999 99861 112
Q ss_pred CccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEEE
Q 003390 686 GDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVFN 742 (823)
Q Consensus 686 ~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvv~N 742 (823)
. ..+.+++++|++|||++++++.|...+.. .+++-.+|-..++++|=++
T Consensus 328 ~-------~~~~~~I~~Li~lRk~~~~~~~s~~~i~~-a~~~~y~a~i~~~~~~k~g 376 (401)
T PLN02361 328 G-------GSIHDQIVKLIDIRKRQDIHSRSSIRILE-AQSNLYSAIIDEKLCMKIG 376 (401)
T ss_pred C-------hHHHHHHHHHHHHHHhCCCCCCCcEEEEE-ecCCeEEEEECCeEEEEec
Confidence 1 25788999999999999999998765543 3344455655566555543
No 30
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=9.9e-39 Score=360.79 Aligned_cols=375 Identities=15% Similarity=0.151 Sum_probs=246.4
Q ss_pred CCCHHhhHhhhhh-hHHHcCCCEEEECCcccC-CCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 319 INTYANFRDDVLP-RIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 319 ~G~~~~~~~~~L~-yLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
.|+++|++ ++|| ||++| |++|||||+++. |. ..+||+|+||++|+|+|||.+||++|++ ||+||+|+|+|
T Consensus 16 ~GdL~gl~-~kLd~yL~~l-v~~vhllPff~psp~-sD~GYdv~DY~~VDP~fGt~eDf~~L~~-----giklmlDlV~N 87 (495)
T PRK13840 16 DGGLKSLT-ALLDGRLDGL-FGGVHILPFFYPIDG-ADAGFDPIDHTKVDPRLGDWDDVKALGK-----THDIMADLIVN 87 (495)
T ss_pred CCCHhHHH-HHHHHHHHHH-hCeEEECCCccCCCC-CCCCCCCcChhhcCcccCCHHHHHHHHh-----CCeEEEEECCC
Confidence 38999999 6999 59999 999999999954 44 5699999999999999999999999995 99999999999
Q ss_pred ccCCCccccccCC-CCC---CCCccccCC-------------------CC------------CcccC-----CCCCCCCC
Q 003390 397 HASNNVLDGLNMF-DGT---DGHYFHSGS-------------------RG------------YHWMW-----DSRLFNYG 436 (823)
Q Consensus 397 H~~~~~~~~~~~f-dg~---~~~yf~~~~-------------------~g------------~~~~w-----~~~~ln~~ 436 (823)
|+|..|+++.... .+. ...||.... .+ ..+.| +.++||+.
T Consensus 88 HtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~ 167 (495)
T PRK13840 88 HMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVH 167 (495)
T ss_pred cCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCC
Confidence 9999986543211 111 111221100 01 01123 24899999
Q ss_pred CHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccC-hhHHHHHHHHHHhhhccCCCEEE
Q 003390 437 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVS 515 (823)
Q Consensus 437 ~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d-~~~~~fl~~~~~~v~~~~p~~~~ 515 (823)
||+|+++|+++++||++ .||||||+|++.++.+.. |. .+.+ .+.++||+++++.++.. +..+
T Consensus 168 NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~-gt-------------~c~~~pe~~~~l~~lr~~~~~~--~~~l 230 (495)
T PRK13840 168 SAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKA-GT-------------SCFMIPETFEFIDRLAKEARAR--GMEV 230 (495)
T ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCC-CC-------------CcCCChHHHHHHHHHHHHhhhc--CCEE
Confidence 99999999999999998 899999999998886541 11 1112 45779999999999876 5678
Q ss_pred EEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhccchhhhhhhHhhhccccccccceecccCcCcccccccch
Q 003390 516 IGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 595 (823)
Q Consensus 516 igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~ 595 (823)
|+|.++..........+..+.|||.+...+. ..|...+... +.+.+... +.+++||+.|||...+-|-..
T Consensus 231 l~Ei~~y~~~~~~~~~e~~~vYnF~Lp~ll~----~aL~~~~~~~----L~~~l~~~--p~~~~n~L~~HDgIgl~d~~~ 300 (495)
T PRK13840 231 LVEIHSYYKTQIEIAKKVDRVYDFALPPLIL----HTLFTGDVEA----LAHWLEIR--PRNAVTVLDTHDGIGIIDVGA 300 (495)
T ss_pred EEeCccccCccccccccccEEecchhhHHHH----HHHHhCCchH----HHHHHHhC--CCccEEeeecCCCCCcccccc
Confidence 9999864322111112345668887755443 2232221111 11111111 456789999999987621100
Q ss_pred ----hhhccChhH----HHhhhcC-----------CCCC--c---------chhhHHHHHHHHHHHHHhCCCcceEeecC
Q 003390 596 ----AFWLMDKDM----YDFMALD-----------RPST--P---------RIDRGIALHKMIRLVTMGLGGEAYLNFMG 645 (823)
Q Consensus 596 ----~~~~~~~~~----~~~~~~~-----------~~~~--~---------~~~~~~a~~k~a~~l~ltlpG~p~l~y~G 645 (823)
..-+++.+. ...+.+. ..+. + .+...-++..++++++|++||+|.| |||
T Consensus 301 ~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~i-Y~~ 379 (495)
T PRK13840 301 DDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQV-YYV 379 (495)
T ss_pred cccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCccee-eec
Confidence 001122111 1112110 0000 0 0011123567789999999999877 999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecC
Q 003390 646 NEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDE 725 (823)
Q Consensus 646 ~E~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~ 725 (823)
.|+|..+ |.... ...+.++..+|..|+|.+.+..-...+++-.++|+++|+++|++.+.+... ..
T Consensus 380 ~ll~~~N--D~~~~----------~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~~~~~~~---~~ 444 (495)
T PRK13840 380 GLLAGPN--DMELL----------ARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFDGAFSYA---AD 444 (495)
T ss_pred hhhccCc--cHHHH----------HhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccCceEEEe---cC
Confidence 9999976 22110 124567888999999997665555679999999999999999996554332 23
Q ss_pred CCcEEEEEc--C--cEEEEEECC
Q 003390 726 GDRVIVFER--G--NLVFVFNFH 744 (823)
Q Consensus 726 ~~~Vlaf~R--~--~llvv~Nf~ 744 (823)
++.-++..| + ...+.+||.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 445 GDTSLTLSWTAGDSSASLTLDFA 467 (495)
T ss_pred CCCeEEEEEecCCceEEEEEEcc
Confidence 344555555 2 466677877
No 31
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=3.5e-39 Score=362.36 Aligned_cols=373 Identities=13% Similarity=0.085 Sum_probs=246.0
Q ss_pred CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 317 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 317 ~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
+++|+++++++ + ||++ ||++|||||+|+++. ++||+|+||++|+|+|||.+||++|+++ |+||+|+|+|
T Consensus 14 ~glgdl~g~l~-~--yL~~-~v~~i~LlPffps~s--D~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~kvmlDlV~N 82 (470)
T TIGR03852 14 KNLKELNKVLE-N--YFKD-AVGGVHLLPFFPSTG--DRGFAPMDYTEVDPAFGDWSDVEALSEK-----YYLMFDFMIN 82 (470)
T ss_pred CChhhHHHHHH-H--HHHH-hCCEEEECCCCcCCC--CCCcCchhhceeCcccCCHHHHHHHHHh-----hhHHhhhccc
Confidence 57889998884 5 9999 799999999998874 7999999999999999999999999997 7999999999
Q ss_pred ccCCCccccccCCCC----CCCCccccC--------C-----------C------------C-CcccC-----CCCCCCC
Q 003390 397 HASNNVLDGLNMFDG----TDGHYFHSG--------S-----------R------------G-YHWMW-----DSRLFNY 435 (823)
Q Consensus 397 H~~~~~~~~~~~fdg----~~~~yf~~~--------~-----------~------------g-~~~~w-----~~~~ln~ 435 (823)
|+|..|+++...-.+ ....||... + + + ..+.| +.++|||
T Consensus 83 HtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~ 162 (470)
T TIGR03852 83 HISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDV 162 (470)
T ss_pred ccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCC
Confidence 999998654332111 111233300 0 0 0 01122 3489999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCccc--ChhHHHHHHHHHHhhhccCCCE
Q 003390 436 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFAT--DVDAVVYLMLVNDMIHGLYPEA 513 (823)
Q Consensus 436 ~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~--d~~~~~fl~~~~~~v~~~~p~~ 513 (823)
.||+|+++|.++++||++ .||||||+|||.++.+.. | ..+. ..+++++|+++++.+ ..|++
T Consensus 163 ~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~-G-------------t~c~~l~pet~~~l~~~r~~~--~~~~~ 225 (470)
T TIGR03852 163 TSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKL-G-------------TNDFFVEPEIWELLDEVRDIL--APTGA 225 (470)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccC-C-------------CCcccCChhHHHHHHHHHHHh--ccCCC
Confidence 999999999999999997 899999999999986541 1 1111 257889999999988 45699
Q ss_pred EEEEecCCCCCCceeccccCCcccchhhhHHHHHHHHHHHhhccchhhhhhhHhhhccccccccceecccCcCccccccc
Q 003390 514 VSIGEDVSGMPTFCIPVQDGGVGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDK 593 (823)
Q Consensus 514 ~~igE~~~~~~~~~~~~~~gglgFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~ 593 (823)
++|+|.+........--.++.+.|+|.+...+...+...-......|.+ . .+..++||+.|||...+.+-
T Consensus 226 ~ll~E~~~~~~~~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~--------~--~p~~~~nfL~sHDgigl~~~ 295 (470)
T TIGR03852 226 EILPEIHEHYTIQFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR--------K--SPMKQFTTLDTHDGIGVVDV 295 (470)
T ss_pred EEEeHhhhhcccccccccceeEEccCccchhhHHHhhccCHHHHHHHHH--------h--CcccceEEeecCCCCCCccc
Confidence 9999997543322110124457788887655432211110011122222 1 12234799999999765221
Q ss_pred chhhhccCh----hHHHhhh----------cCC-CCCc-----------chhhHHHHHHHHHHHHHhCCCcceEeecCcc
Q 003390 594 TIAFWLMDK----DMYDFMA----------LDR-PSTP-----------RIDRGIALHKMIRLVTMGLGGEAYLNFMGNE 647 (823)
Q Consensus 594 t~~~~~~~~----~~~~~~~----------~~~-~~~~-----------~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E 647 (823)
. -+++. .+...|. ... .++. ......++..++++++|++||+|.| |||.|
T Consensus 296 ~---glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~i-Yy~~l 371 (470)
T TIGR03852 296 K---DLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQV-YYVGL 371 (470)
T ss_pred c---ccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceE-Eechh
Confidence 0 01121 1222222 000 0000 1122235667889999999999988 99999
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCC-CcEEEEeecCC
Q 003390 648 FGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTS-EHQYVSRKDEG 726 (823)
Q Consensus 648 ~G~~~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~-g~~~i~~~~~~ 726 (823)
+|+.+..+.+. -.+..++.+|..++.........+.+.+-...||++|+++|++.- |.+.+ ...+
T Consensus 372 lg~~nD~~~~~------------rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~--~~~~ 437 (470)
T TIGR03852 372 LAGKNDIELLE------------ETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDI--ETPS 437 (470)
T ss_pred hcCCchHHHHH------------hcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEe--cCCC
Confidence 99987432221 122345567777766654322233455555559999999999865 55443 3456
Q ss_pred CcEEEEEc------CcEEEEEECCC
Q 003390 727 DRVIVFER------GNLVFVFNFHW 745 (823)
Q Consensus 727 ~~Vlaf~R------~~llvv~Nf~~ 745 (823)
+.|++|.| +.+++++|++.
T Consensus 438 ~~~~~~~r~~~~~~~~~~~~~n~~~ 462 (470)
T TIGR03852 438 ENQIEIVRTNKDGGNKAILTANLKT 462 (470)
T ss_pred CcEEEEEEEcCCCCceEEEEEecCC
Confidence 78999998 25899999983
No 32
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-38 Score=366.49 Aligned_cols=400 Identities=22% Similarity=0.271 Sum_probs=247.2
Q ss_pred ceEEEeecCCCCCC--------CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHH
Q 003390 303 LRIYEAHVGMSSTE--------PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDD 374 (823)
Q Consensus 303 ~~IYE~hv~~f~~~--------~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~ed 374 (823)
.+|||+.++.|... .+.|||+||+ ++||||++|||++|||+||++++. .++||++.||+.++|.|||++|
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~-~~LdYl~~LGv~aiwl~Pi~~s~~-~~~gY~~~Dy~~id~~~Gt~~d 78 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGIT-EKLDYLKELGVDAIWLSPIFESPQ-ADHGYDVSDYTKVDPHFGTEED 78 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHH-HhhhHHHHhCCCEEEeCCCCCCCc-cCCCccccchhhcCcccCCHHH
Confidence 47999999998654 3469999999 799999999999999999999863 6799999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecccccCCCccccccCCC-CCC---CCccc---------------cCCCCCccc---C----
Q 003390 375 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFD-GTD---GHYFH---------------SGSRGYHWM---W---- 428 (823)
Q Consensus 375 lk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fd-g~~---~~yf~---------------~~~~g~~~~---w---- 428 (823)
|++||++||++||+||||+|+||++..|.+...... +.. ..||. ....+..|. +
T Consensus 79 ~~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (505)
T COG0366 79 FKELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYY 158 (505)
T ss_pred HHHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceE
Confidence 999999999999999999999999999853322111 110 02222 111122222 1
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHH
Q 003390 429 ------DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLML 501 (823)
Q Consensus 429 ------~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~ 501 (823)
..++||+.|++|++.+++.++||++ +||||||+|+++++.... +.+ .......+.+ -.++++.
T Consensus 159 ~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~ 228 (505)
T COG0366 159 LHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDF-GLP--------PSEENLTFLEEIHEYLRE 228 (505)
T ss_pred EEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhcccc-CCC--------CcccccccHHHHHHHHHH
Confidence 1267999999999999999999999 999999999999985431 110 0000001111 2244444
Q ss_pred HHHhhhccCCCEEEEEecCCCCCCceeccccC-----CcccchhhhHHHH----HHHHHHHhhccchhhhhhhHhhhc-c
Q 003390 502 VNDMIHGLYPEAVSIGEDVSGMPTFCIPVQDG-----GVGFDYRLQMAIA----DKWIELLKKRDEDWKMGAIVHTMT-N 571 (823)
Q Consensus 502 ~~~~v~~~~p~~~~igE~~~~~~~~~~~~~~g-----glgFd~~~~~~~~----d~~~~~l~~~~~~~~~~~~~~~l~-~ 571 (823)
.+..+.......+..++........+...... .+.|++....... ......++.....|. ..+. .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 303 (505)
T COG0366 229 ENPDVLIYGEAITDVGEAPGAVKEDFADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWP-----LAVNLN 303 (505)
T ss_pred HHHHHHhcCcceeeeeccccccchhhhhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHH-----hhhccc
Confidence 44444333234444444443322222211000 0111111000000 000000000000000 0010 1
Q ss_pred ccccccceecccCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCC
Q 003390 572 RRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHP 651 (823)
Q Consensus 572 ~~~~~~~v~y~enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~ 651 (823)
..|. ..|..|||+.|+-+... .+. ....+..+++..++++++|+|+| |||+|+|+.
T Consensus 304 ~~~~---~~~~~~hD~~r~~~~~~----~~~----------------~~~~~~~~~~~~~~~~~~g~p~i-y~G~e~g~~ 359 (505)
T COG0366 304 DGWN---NLFLSNHDQPRLLSRFG----DDV----------------GGRDASAKLLAALLFLLPGTPFI-YYGDELGLT 359 (505)
T ss_pred cCch---hhhhhhcCccceeeecc----CCc----------------cchHHHHHHHHHHHHhCCCCcEE-ecccccCCC
Confidence 1222 33789999998754321 000 00135667888899999999988 999999997
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCcccCcccCCC---------------------------cccccc--chHHHHHHHH
Q 003390 652 EWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLG---------------------------DADYLR--YRGMQEFDRA 702 (823)
Q Consensus 652 ~~~d~p~~~~~~~~~~~~~gn~~s~~~~r~~~~w~---------------------------~~~~~~--~~~l~~f~r~ 702 (823)
+..+.+........ .......+++.||.+|.|. ...... ..+++.++++
T Consensus 360 ~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~ 437 (505)
T COG0366 360 NFKDPPIKYYDDVE--LDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRR 437 (505)
T ss_pred CCCCcchhhhchhh--hhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHH
Confidence 65433211000000 0112344566788888887 111111 4589999999
Q ss_pred HHHHHHHh-cCCCCCcEEEEeecCCCcEEEEEcC----cEEEEEECCC
Q 003390 703 MQHLEEKY-GFMTSEHQYVSRKDEGDRVIVFERG----NLVFVFNFHW 745 (823)
Q Consensus 703 Li~LRk~~-~~l~~g~~~i~~~~~~~~Vlaf~R~----~llvv~Nf~~ 745 (823)
|+++|+.+ ..+..|...+........+++|.|. .+++++|++.
T Consensus 438 l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 438 LIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 (505)
T ss_pred HHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCC
Confidence 99999988 5666664555555555679999993 3899999984
No 33
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=7.7e-37 Score=345.56 Aligned_cols=468 Identities=12% Similarity=0.124 Sum_probs=293.9
Q ss_pred CCceEEEeecCCCCCCCCCCCHHhhHh-hhhhhHHHcCCCEEEECCcccC---------CCCCCCCCccccccCcCCCCC
Q 003390 301 KSLRIYEAHVGMSSTEPIINTYANFRD-DVLPRIKRLGYNAVQIMAVQEH---------SYYASFGYHVTNFFAPSSRCG 370 (823)
Q Consensus 301 ~~~~IYE~hv~~f~~~~~~G~~~~~~~-~~L~yLk~LGvt~I~L~Pi~e~---------~~~~~~GY~~~~~~a~~~~~G 370 (823)
...+=+.+++.+.-..++..-+..+.+ ...+||++|||++|||+|++++ |. ...||+++| |.|+|+||
T Consensus 50 ~a~~W~~~~P~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~-~D~gyDi~d-~~Idp~~G 127 (688)
T TIGR02455 50 IASVWFTAYPAAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPS-IDGNFDRIS-FDIDPLLG 127 (688)
T ss_pred hcCeeEEecchhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCC-CCCCCCccc-CccCcccC
Confidence 344566777777765554434444443 5789999999999999999999 65 357999999 59999999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCC-CCCCCCcc--------------------------------
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYF-------------------------------- 417 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f-dg~~~~yf-------------------------------- 417 (823)
|.+||++||++||++||+||+|+|+||||..|.-.+..- ++..+.||
T Consensus 128 T~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~ 207 (688)
T TIGR02455 128 SEEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDE 207 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHH
Confidence 999999999999999999999999999999884111110 12222233
Q ss_pred -----------------ccCCCCCcccCC----------------------CCCCCCCCHH--HHHHHH-HHHHHHHHhc
Q 003390 418 -----------------HSGSRGYHWMWD----------------------SRLFNYGSWE--VLRFLL-SNARWWLEEY 455 (823)
Q Consensus 418 -----------------~~~~~g~~~~w~----------------------~~~ln~~~~~--V~~~l~-~~l~~Wl~e~ 455 (823)
..+.....|.|+ .|+|||.||. ||+.|+ +++++|++ .
T Consensus 208 L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-l 286 (688)
T TIGR02455 208 LKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-L 286 (688)
T ss_pred HhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-h
Confidence 111112345554 3789999999 999999 89999999 9
Q ss_pred CceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhh--ccCCCEEEEEecCCCCCCceeccccC
Q 003390 456 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIH--GLYPEAVSIGEDVSGMPTFCIPVQDG 533 (823)
Q Consensus 456 gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~--~~~p~~~~igE~~~~~~~~~~~~~~g 533 (823)
|+||||+|++..|.... +- .+ ....++..|++.+++.|. ..+|+.++++|..- .+.....+..+
T Consensus 287 G~~GfRLDAvpfLg~e~-~~----~~--------~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl-~~~d~~~~~g~ 352 (688)
T TIGR02455 287 GARGLRLDANGFLGVER-RA----EG--------TAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNL-TIDDIAAMSHG 352 (688)
T ss_pred ccccceeccccceeeec-CC----CC--------CCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccC-CHHHHHHHhCC
Confidence 99999999999885431 11 00 001335678999999998 78899999999974 45555555554
Q ss_pred C--cccchhhhHHHHHHHHHHHhhccchhhhhhhHhhhcccc-ccccceecccCcCcccccccchhhh------------
Q 003390 534 G--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRR-WLEKCVAYAESHDQALVGDKTIAFW------------ 598 (823)
Q Consensus 534 g--lgFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~v~y~enHD~~r~g~~t~~~~------------ 598 (823)
+ +.|||..+-.+ ...|...+...... +........ -..+.+.++.|||+..+. .+.+|
T Consensus 353 ~~dl~~dF~t~p~~----~~AL~tgda~pLr~-~L~~~~~~gid~~~~~~~LrNHDELtle--lvh~~~~~~~~~~~~~g 425 (688)
T TIGR02455 353 GADLSYDFITRPAY----HHALLTGDTEFLRL-MLKEMHAFGIDPASLIHALQNHDELTLE--LVHFWTLHAHDHYHYKG 425 (688)
T ss_pred CcceeecccccHHH----HHHHHcCCHHHHHH-HHHhhhcCCCCchhhhhhccCccccchh--hhhhccccccccccccc
Confidence 4 44666543222 12222211111111 111111111 233457899999996542 01011
Q ss_pred ----------ccChhHHHhhhcCCC---------------------------CCcchhhHHHHHHHHHHHHHh----CCC
Q 003390 599 ----------LMDKDMYDFMALDRP---------------------------STPRIDRGIALHKMIRLVTMG----LGG 637 (823)
Q Consensus 599 ----------~~~~~~~~~~~~~~~---------------------------~~~~~~~~~a~~k~a~~l~lt----lpG 637 (823)
-+-..||..++++.. -.+..+...+..+++.+++++ +||
T Consensus 426 ~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG 505 (688)
T TIGR02455 426 QTLPGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPG 505 (688)
T ss_pred ccCCccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCC
Confidence 123466766666431 113334455667888899999 999
Q ss_pred cceEeecC--------------cccCCCCCCCCCCCCC--CC--CCCCcCCCCCCCCcccCcccCCCccccccchHHHHH
Q 003390 638 EAYLNFMG--------------NEFGHPEWIDFPRGDQ--RL--PNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEF 699 (823)
Q Consensus 638 ~p~l~y~G--------------~E~G~~~~~d~p~~~~--~~--~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f 699 (823)
+|+| ||| +|+||.+..-.++... .. |......+ .-. ..+..+.=...+.....++++.
T Consensus 506 ~p~L-~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~-~lP--~~~~~Ygnv~~Ql~dp~S~l~~ 581 (688)
T TIGR02455 506 VFAL-SGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAE-GLP--KARALYGSLAEQLDEPDSFACK 581 (688)
T ss_pred ceEe-ecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccC-CCC--CCcCCCCCHHHHhhCCccHHHH
Confidence 9887 999 9999953322222100 00 10000000 000 0111111111233455799999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc------CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCc
Q 003390 700 DRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER------GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLF 773 (823)
Q Consensus 700 ~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R------~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~ 773 (823)
.++|++.||++++...+... ........|+|+.| +.+|+|.||+.......+.++...++...++++....
T Consensus 582 l~~il~vR~~~~i~~~~~~~-~~~~~~~gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~-- 658 (688)
T TIGR02455 582 LKKILAVRQAYDIAASKQIL-IPDVQAPGLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVE-- 658 (688)
T ss_pred HHHHHHHHHhCCcccCceee-ecCCCCCcEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCcc--
Confidence 99999999999998877433 24456678999988 2499999999433333333332344556666543221
Q ss_pred CCccccCCCccccccccccCCCCeEEEEEEcCceEEEEEEccC
Q 003390 774 GGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYALADE 816 (823)
Q Consensus 774 gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~~~~~ 816 (823)
+ . ....+++.|+|++++..+|..+..
T Consensus 659 ~---~--------------~~~~~~~~i~L~~y~~~wl~~~~~ 684 (688)
T TIGR02455 659 G---D--------------LTDDCELMINLDPYEALALRIVNA 684 (688)
T ss_pred C---C--------------cCCCceeEEEecCcceEEEEeccc
Confidence 0 0 012345889999999999987654
No 34
>PLN02784 alpha-amylase
Probab=100.00 E-value=6.3e-37 Score=356.62 Aligned_cols=329 Identities=19% Similarity=0.252 Sum_probs=216.1
Q ss_pred CceEEEeecCCCC-CCCCCCC-HHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHH
Q 003390 302 SLRIYEAHVGMSS-TEPIINT-YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLI 379 (823)
Q Consensus 302 ~~~IYE~hv~~f~-~~~~~G~-~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV 379 (823)
....||+.+..|- ..++-|. |++|+ ++||||++||||+|||+|++++.. ++||+|.|||.++++|||.+|||+||
T Consensus 498 ~~~~~eVmlQgF~Wds~~dg~w~~~I~-ekldyL~~LG~taIWLpP~~~s~s--~~GY~p~D~y~lds~yGT~~ELk~LI 574 (894)
T PLN02784 498 TGSGFEILCQGFNWESHKSGRWYMELG-EKAAELSSLGFTVVWLPPPTESVS--PEGYMPKDLYNLNSRYGTIDELKDLV 574 (894)
T ss_pred ccCCceEEEEeEEcCcCCCCchHHHHH-HHHHHHHHhCCCEEEeCCCCCCCC--CCCcCcccccccCcCcCCHHHHHHHH
Confidence 3457777776664 2122233 68998 699999999999999999998764 69999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecccccCCCcccc---ccCCCCCC----------CCccccCCCCCccc----CCCCCCCCCCHHHHH
Q 003390 380 DKAHELGLLVLMDIVHSHASNNVLDG---LNMFDGTD----------GHYFHSGSRGYHWM----WDSRLFNYGSWEVLR 442 (823)
Q Consensus 380 ~~aH~~GI~VIlDvV~NH~~~~~~~~---~~~fdg~~----------~~yf~~~~~g~~~~----w~~~~ln~~~~~V~~ 442 (823)
++||++||+||+|+|+||++..+... .+.|.+.. ...|. .++..+. ...++||+.||+||+
T Consensus 575 ~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~--GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 575 KSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQ--GRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccC--CcCCcCcccccCcCCcCCCCCHHHHH
Confidence 99999999999999999998643111 11222210 00111 1111111 134899999999999
Q ss_pred HHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCCC
Q 003390 443 FLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVSG 522 (823)
Q Consensus 443 ~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~~ 522 (823)
.|.++++||++++||||||||+|+++.. .|++++.+ +..| .++|||.|.+
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~--------------------------~Fvkeyv~---a~kp-~F~VGEyWd~ 702 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWG--------------------------GYVKDYME---ASEP-YFAVGEYWDS 702 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCH--------------------------HHHHHHHh---ccCC-cEEEEEeccc
Confidence 9999999999899999999999986521 24444433 3445 7999999987
Q ss_pred CCC--------------ceecccc--CC--cccchhhhHHHHHHHHHHHhhccchhhhhhhHhh--hccccccccceecc
Q 003390 523 MPT--------------FCIPVQD--GG--VGFDYRLQMAIADKWIELLKKRDEDWKMGAIVHT--MTNRRWLEKCVAYA 582 (823)
Q Consensus 523 ~~~--------------~~~~~~~--gg--lgFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~~v~y~ 582 (823)
... .+..+.+ ++ ..|||.+...+.+.+ + ..+.|.+...... ..-..|+.++|+|+
T Consensus 703 ~~~~~g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~----~-~~e~wrL~d~~g~~~glv~~~P~~AVTFV 777 (894)
T PLN02784 703 LSYTYGEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSAL----E-RCEYWRLSDQKGKPPGVVGWWPSRAVTFI 777 (894)
T ss_pred cccccCccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHH----h-ccchhhhhhccCCCCCeeccccCceEEEe
Confidence 321 0111211 11 237777665554322 1 2234444332210 11235788999999
Q ss_pred cCcCcccccccchhhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCCCCCCCCCCCC
Q 003390 583 ESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQR 662 (823)
Q Consensus 583 enHD~~r~g~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~~~d~p~~~~~ 662 (823)
+|||+.+.-. .|..+. ....++.+++||+||+||| |||+=+|.
T Consensus 778 DNHDTg~~Q~----~w~~p~--------------------~k~~~AYAyILthpG~PcV-Fy~h~y~~------------ 820 (894)
T PLN02784 778 ENHDTGSTQG----HWRFPE--------------------GKEMQGYAYILTHPGTPAV-FYDHIFSH------------ 820 (894)
T ss_pred cCCCCCCCcc----cCCCCc--------------------cchhhHHHHHHcCCCcceE-Eehhhhhh------------
Confidence 9999965311 121111 1224478999999999999 88764421
Q ss_pred CCCCCcCCCCCCCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEcCcEEEEE
Q 003390 663 LPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFERGNLVFVF 741 (823)
Q Consensus 663 ~~~~~~~~gn~~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R~~llvv~ 741 (823)
+.+-+++|+.+|+...+-..+...+.. .+.+--.|-..+.++|-+
T Consensus 821 ---------------------------------~~~~I~~Li~iRk~~gI~~~S~v~i~~-a~~~~Y~a~i~~k~~~ki 865 (894)
T PLN02784 821 ---------------------------------YHPEIASLISLRNRQKIHCRSEVKITK-AERDVYAAIIDEKVAMKI 865 (894)
T ss_pred ---------------------------------hHHHHHHHHHHHHHcCCCCCCceeEEE-ecCCcEEEEeCCeeEEEE
Confidence 122389999999999877666433322 222333344446666555
No 35
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=334.09 Aligned_cols=166 Identities=28% Similarity=0.398 Sum_probs=136.1
Q ss_pred CCceEEEeecCCCCCC--CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHH
Q 003390 301 KSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSL 378 (823)
Q Consensus 301 ~~~~IYE~hv~~f~~~--~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~L 378 (823)
+..+|||+.+++|..+ .+.|+++|++ ++|+||++||+|+|||+||++++. ..+||++.||+.++|+|||.+||++|
T Consensus 16 ~~~~~YQI~~~sF~~s~~d~~G~~~GI~-~kldyi~~lG~taiWisP~~~s~~-~~~GY~~~d~~~l~p~fGt~edf~~L 93 (545)
T KOG0471|consen 16 KTESIYQIYPDSFADSDGDGVGDLKGIT-SKLDYIKELGFTAIWLSPFTKSSK-PDFGYDASDLEQLRPRFGTEEDFKEL 93 (545)
T ss_pred hcCceeEEeccccccccCCCccccccch-hhhhHHHhcCCceEEeCCCcCCCH-HHhccCccchhhhcccccHHHHHHHH
Confidence 5688999999999754 5679999999 799999999999999999999886 37999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecccccCCCccccccCC-------------CCCC--------CCccccCCCCCcccC---------
Q 003390 379 IDKAHELGLLVLMDIVHSHASNNVLDGLNMF-------------DGTD--------GHYFHSGSRGYHWMW--------- 428 (823)
Q Consensus 379 V~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f-------------dg~~--------~~yf~~~~~g~~~~w--------- 428 (823)
|+++|++||++|+|+|+||++..++++.... ++.. +..+.....+..|.|
T Consensus 94 i~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l 173 (545)
T KOG0471|consen 94 ILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYL 173 (545)
T ss_pred HHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceec
Confidence 9999999999999999999997765443221 1110 111111112222332
Q ss_pred -----CCCCCCCCCHHHHHHHHHHHH-HHHHhcCceEEEEccccccc
Q 003390 429 -----DSRLFNYGSWEVLRFLLSNAR-WWLEEYKFDGFRFDGVTSMM 469 (823)
Q Consensus 429 -----~~~~ln~~~~~V~~~l~~~l~-~Wl~e~gvDGfR~D~v~~m~ 469 (823)
..+++|++||+|++.|.+.++ +|++ +||||||+|+++++.
T Consensus 174 ~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~ 219 (545)
T KOG0471|consen 174 GQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYA 219 (545)
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEcccccc
Confidence 238999999999999999999 8888 999999999999874
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=2.9e-31 Score=312.91 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=134.0
Q ss_pred CCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 003390 320 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 399 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~ 399 (823)
+||.+++ ++||||++||||+|||+||+++...++|||+++||+.|+|.|||.++|++||++||++||+||||+|+||++
T Consensus 13 ~tf~~~~-~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 13 FTFDDAA-ALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCHHHHH-HhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7999999 699999999999999999999866667999999999999999999999999999999999999999999999
Q ss_pred CC---cccccc------------CC----C-------------CCC-----------------C----CccccCCC----
Q 003390 400 NN---VLDGLN------------MF----D-------------GTD-----------------G----HYFHSGSR---- 422 (823)
Q Consensus 400 ~~---~~~~~~------------~f----d-------------g~~-----------------~----~yf~~~~~---- 422 (823)
.+ +.++.. .| + |.. . .||+....
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 76 211110 11 0 000 0 03321110
Q ss_pred CC----------------------------ccc--------------CCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEE
Q 003390 423 GY----------------------------HWM--------------WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGF 460 (823)
Q Consensus 423 g~----------------------------~~~--------------w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGf 460 (823)
.+ +|- .+.+.++.++|+|.+.....+..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 00 111 113567888999999999999999998779999
Q ss_pred EEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEe-cCCC
Q 003390 461 RFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGE-DVSG 522 (823)
Q Consensus 461 R~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE-~~~~ 522 (823)
|+|.+..+. ++-.||+.+++.+ .|+.+++.| .+..
T Consensus 252 RIDh~dGL~------------------------dP~~Yl~rLr~~~---~~~~yivvEKIl~~ 287 (825)
T TIGR02401 252 RIDHIDGLA------------------------DPEGYLRRLRELV---GPARYLVVEKILAP 287 (825)
T ss_pred EeccccccC------------------------ChHHHHHHHHHhc---CCCceEEEEEeccC
Confidence 999997662 3456999998664 345788888 5543
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.94 E-value=2e-25 Score=264.62 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=77.9
Q ss_pred CCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 003390 320 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 399 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~ 399 (823)
++|.+++ ++||||++||||+|||+||++....++|||+++||+.|+|.|||.++|++||++||++||+||||+|+||++
T Consensus 17 ~tf~~~~-~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 17 FTFDDAA-ELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCHHHHH-HHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6899999 699999999999999999999865578999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 003390 400 NNV 402 (823)
Q Consensus 400 ~~~ 402 (823)
.++
T Consensus 96 ~~~ 98 (879)
T PRK14511 96 VGG 98 (879)
T ss_pred CcC
Confidence 764
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=5.1e-22 Score=206.57 Aligned_cols=380 Identities=17% Similarity=0.209 Sum_probs=226.2
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCC-----CCCC-CCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSY-----YASF-GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 394 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~-----~~~~-GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV 394 (823)
.+..|+.|+-..|.--||..||+.|++|+.. +.=| .|+|.. |.++.|-|..+||+.||..|.+-|+++++|+|
T Consensus 38 KW~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 38 KWVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred ehHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHHHHHHHhhccceEEEehhh
Confidence 4667777888999999999999999999742 2223 599999 78899999999999999999999999999999
Q ss_pred ccccCCCccc-------------cccCCCCCCCC--ccccCC-C---CCcccC------------CCCCCCCCCHHHHHH
Q 003390 395 HSHASNNVLD-------------GLNMFDGTDGH--YFHSGS-R---GYHWMW------------DSRLFNYGSWEVLRF 443 (823)
Q Consensus 395 ~NH~~~~~~~-------------~~~~fdg~~~~--yf~~~~-~---g~~~~w------------~~~~ln~~~~~V~~~ 443 (823)
+||++....+ +...|.|.+.. -|+... + .....| +..+||.++.-||..
T Consensus 117 ~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~K 196 (504)
T KOG2212|consen 117 INHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSK 196 (504)
T ss_pred hhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHH
Confidence 9999864211 11233333211 122211 1 111112 346899999999999
Q ss_pred HHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHH-HHHHHHHHhhhccCCCEEEEEecCCC
Q 003390 444 LLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSIGEDVSG 522 (823)
Q Consensus 444 l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~-~fl~~~~~~v~~~~p~~~~igE~~~~ 522 (823)
|++.|...++ .||-|||.|+++||... |+..+ .-|+.+|.-....+...+++-|.-..
T Consensus 197 ive~L~hLid-lGVAGFRvDAsKHMwp~--------------------Di~~I~~~l~nLnsD~f~s~srpfi~qEVID~ 255 (504)
T KOG2212|consen 197 IAEYLNHLID-IGVAGFRVDASKHMWPG--------------------DIKAILDKLHNLNSDWFPSGSKPFIYQEVIDL 255 (504)
T ss_pred HHHHHHHHHH-hccceeeechhhccChH--------------------HHHHHHHHHhhcccccccCCCCceehhhhhhc
Confidence 9999999999 99999999999999432 22221 12233332222223345666666532
Q ss_pred CCC--ceeccccCCcccchhhhHHHHHH-----HHHHHhhccchhhhhhhHhhhccccccccceecccCcCcccccccch
Q 003390 523 MPT--FCIPVQDGGVGFDYRLQMAIADK-----WIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 595 (823)
Q Consensus 523 ~~~--~~~~~~~gglgFd~~~~~~~~d~-----~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~ 595 (823)
--+ -+..+..-|---.|++...+... -+++|+.-...|... ...+.++|++|||+.|-....-
T Consensus 256 GgE~v~~~dY~g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~wGf~----------~s~~~L~FvDNHDNQR~~gagg 325 (504)
T KOG2212|consen 256 GGEPIKSSDYFGNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEGWGFM----------PSDRALVFVDNHDNQRGHGAGG 325 (504)
T ss_pred CCceeecccccCCceeeeeechHHHHHHHhcchhHHHHHhcCCccCcC----------CCcceEEEeccCcccccCCCCc
Confidence 111 12222222211233333333222 134555544444321 2346789999999998533210
Q ss_pred hhhccChhHHHhhhcCCCCCcchhhHHHHHHHHHHHHHhCC-CcceEeecCcccCCCCCCCCCCCCCCCCCCCcC-CCCC
Q 003390 596 AFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLG-GEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFV-PGNN 673 (823)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlp-G~p~l~y~G~E~G~~~~~d~p~~~~~~~~~~~~-~gn~ 673 (823)
+. .+.....++.|||.++++++| |+|-+ ..---|--.+|...+. ....+ ....
T Consensus 326 a~------------------VltYK~~~~YkmA~~FmLA~PyG~~RV-MSSFaF~~~D~~PP~~------~~~~i~SP~F 380 (504)
T KOG2212|consen 326 AS------------------VLTYKDARLYKMAVGFMLAHPYGFTRV-MSSFAFDVNDWVPPPN------NNGVIKSPTF 380 (504)
T ss_pred ce------------------EEEecchhhhhhhhhhheecccCcchh-heeeeeecCCCCCCCC------CCcceeccee
Confidence 00 011233468899999999999 88766 3332232233322111 11111 1122
Q ss_pred CCCcccCcccCCCccccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEeecCCCcEEEEEc-CcEEEEEECCCCCcccce
Q 003390 674 FSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDEGDRVIVFER-GNLVFVFNFHWNSSYSDY 752 (823)
Q Consensus 674 ~s~~~~r~~~~w~~~~~~~~~~l~~f~r~Li~LRk~~~~l~~g~~~i~~~~~~~~Vlaf~R-~~llvv~Nf~~~~~~~~~ 752 (823)
++...|.. -|.... -..-++.|.++|..- .+.+...+.+...+-|+|.| .+=.+++|...-.-...+
T Consensus 381 n~D~tC~~--GWvCEH------RWrqI~~Mv~FrnAV----~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l 448 (504)
T KOG2212|consen 381 NPDTTCGN--GWVCEH------RWRQIRNMVNFRNAV----DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTL 448 (504)
T ss_pred CCCCcccC--ceeeec------hHHHHHHHHhhhhhc----CCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHH
Confidence 22233433 444432 233467888888654 23333334466678999999 466778886521122334
Q ss_pred EEcccCCceEEEEEeCCC
Q 003390 753 RVGCLKPGKYKIVLDSDD 770 (823)
Q Consensus 753 ~l~v~~~g~~~~vl~sd~ 770 (823)
..+ .++|+|+++++.+.
T Consensus 449 ~T~-LPAGtYCDviSG~~ 465 (504)
T KOG2212|consen 449 QTG-LPAGTYCDVISGDK 465 (504)
T ss_pred hcC-CCCCceeeeecccc
Confidence 444 45899999998543
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.87 E-value=2.5e-22 Score=199.23 Aligned_cols=93 Identities=25% Similarity=0.368 Sum_probs=84.2
Q ss_pred EeecCCCCC--CCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCC--CCCCCccccccCcCCCCCCHHHHHHHHHHH
Q 003390 307 EAHVGMSST--EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYY--ASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 382 (823)
Q Consensus 307 E~hv~~f~~--~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~--~~~GY~~~~~~a~~~~~Gt~edlk~LV~~a 382 (823)
|+.+..|.. ..+.|+|++++ ++|+||++||||+|||+||++++.. .+|||+++||++++|+|||++||++||++|
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~-~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~ 79 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGII-EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA 79 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHH-HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence 355667753 34579999999 6999999999999999999998853 679999999999999999999999999999
Q ss_pred HHcCCEEEEEecccccCC
Q 003390 383 HELGLLVLMDIVHSHASN 400 (823)
Q Consensus 383 H~~GI~VIlDvV~NH~~~ 400 (823)
|++||+||||+|+||++.
T Consensus 80 h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 80 HARGIKVILDVVINHTSD 97 (166)
T ss_pred HHCCCEEEEEECCCCCCC
Confidence 999999999999999987
No 40
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=99.83 E-value=2.2e-20 Score=168.84 Aligned_cols=96 Identities=56% Similarity=1.106 Sum_probs=87.4
Q ss_pred cCCcEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCc-ccccCccc
Q 003390 187 SDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGI-KDSIPAWI 265 (823)
Q Consensus 187 ~~~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~~-~~~~~~~~ 265 (823)
.++|++||||||+|++|+|+||||+|++..++|+|.+.|+|+++||++.+|...++||++|||+|...+|. .+++|||+
T Consensus 3 ~~~g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 3 EDGGVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred CCCeEEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 46789999999999999999999999988899999999999999999998988899999999999986564 58999999
Q ss_pred eeeccCCCCCCCCcEEe
Q 003390 266 KFSVQAPGEIPYNGIYY 282 (823)
Q Consensus 266 ~~~~~~~~~~~~~~~~~ 282 (823)
+++++.|.+..|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~ 99 (99)
T cd02854 83 KYVTQDKETALYDGVFW 99 (99)
T ss_pred eEEEeCCCCcceeeEEC
Confidence 99999998877777765
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.82 E-value=9.8e-19 Score=195.07 Aligned_cols=306 Identities=24% Similarity=0.330 Sum_probs=200.6
Q ss_pred ccCCcEEcCCc-EEEEEecCCcC-------eEEEEe-------ecCCCCC------cccccccCCCceEEEEeCCCCCCC
Q 003390 180 EKFGFIRSDTG-ITYREWAPGAK-------SASLIG-------DFNNWNP------NADIMTQNEFGVWEIFLPNNADGS 238 (823)
Q Consensus 180 ~~lG~~~~~~g-v~fr~WAP~A~-------~V~L~g-------dfN~w~~------~~~~m~r~~~GvWei~ip~~~~g~ 238 (823)
..||+|+..+| |.|-.|.|.-. .|+|.. ||..-+. ...++.|.+.-+| ..|.+...|.
T Consensus 26 ~rLGAh~~~dGlteiGFWtPel~~~~i~~~~i~LEVftP~~~ID~~~~~q~v~f~R~~~~L~~qgey~W-gVv~GlraGt 104 (811)
T PF14872_consen 26 TRLGAHYRPDGLTEIGFWTPELAGDVIQPRDIYLEVFTPLEPIDPRAPEQTVRFRRDRLPLERQGEYHW-GVVAGLRAGT 104 (811)
T ss_pred HHhcCccCCCCceEEeeccchhhhhhccccceEEEEecCCCCCCCcCCCceeEEEEEEEeeccccceee-ehhhccCCCC
Confidence 47999999999 89999999655 788763 3322211 1136667666677 4466666665
Q ss_pred CCCCCCCEEEEEEeCCCCcccc-cCccc---eeeccCCCCCCCCcEEeCCCc------cccccccC-------CCCCCCC
Q 003390 239 PPIPHGSRVKIHMDTPSGIKDS-IPAWI---KFSVQAPGEIPYNGIYYDPPE------EEKYVFQH-------PQPKKPK 301 (823)
Q Consensus 239 ~~~~~g~~y~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~-------~~~~~~~ 301 (823)
. ..-|+.|..+.....+.... -||.+ +|.+..|. -+||.+. +..|--+. .-+..+.
T Consensus 105 r-~q~GsfYwLry~d~~~~~~~I~DpLaySlPyGvfaPA------ElYDl~~lq~~RaD~~Yf~~~~a~~~~~~~~rv~~ 177 (811)
T PF14872_consen 105 R-DQAGSFYWLRYRDQDGEVQIIRDPLAYSLPYGVFAPA------ELYDLERLQRRRADLDYFEATGAADPSDGIPRVPA 177 (811)
T ss_pred c-ccccceEEEEEccCCCCeEEecccccccCcccccChH------HhhchHhHhhhhhhHHHHHhhccccCCCCCcccCC
Confidence 4 34588998887665554321 12221 23333333 3555542 11121111 1133467
Q ss_pred CceEEEeecCCCCCCCCCCCHHhhHhhhhhhHHH---------------cCCCEEEECCcccC-----------------
Q 003390 302 SLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKR---------------LGYNAVQIMAVQEH----------------- 349 (823)
Q Consensus 302 ~~~IYE~hv~~f~~~~~~G~~~~~~~~~L~yLk~---------------LGvt~I~L~Pi~e~----------------- 349 (823)
+..|-|+||+..|++ ||+.|++ ..-..|.+ .||++||||||-..
T Consensus 178 P~nILQiHv~TAsp~---GtlaGLT-~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~ 253 (811)
T PF14872_consen 178 PRNILQIHVGTASPE---GTLAGLT-RIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIR 253 (811)
T ss_pred CceeEEEecCCCCCC---cchHHHH-HHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeec
Confidence 889999999999877 8999998 34444432 89999999998642
Q ss_pred --------------------------CCCCCCCCccccc--cCcCCC-CC--CHHHHHHHHHHHHH---cCCEEEEEecc
Q 003390 350 --------------------------SYYASFGYHVTNF--FAPSSR-CG--TPDDLKSLIDKAHE---LGLLVLMDIVH 395 (823)
Q Consensus 350 --------------------------~~~~~~GY~~~~~--~a~~~~-~G--t~edlk~LV~~aH~---~GI~VIlDvV~ 395 (823)
|..-+||||+.=+ -+++|. ++ .|+||-.||.++|. ..|+||+|+|+
T Consensus 254 ~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVy 333 (811)
T PF14872_consen 254 PEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVY 333 (811)
T ss_pred ccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeec
Confidence 1123799997533 334442 23 39999999999996 78999999999
Q ss_pred cccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCc
Q 003390 396 SHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGL 475 (823)
Q Consensus 396 NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~ 475 (823)
.|+......-++. .|+. ++. ++ ..++|+.+|.||..|++.-+.=++ +|+||+|+|++.-.-+-
T Consensus 334 GHADNQ~~~LLn~------~flk-GPn----MY-GQdlnhq~P~VRAILLEmQRRK~n-~GaDGIRVDGgQDFk~f---- 396 (811)
T PF14872_consen 334 GHADNQALDLLNR------RFLK-GPN----MY-GQDLNHQNPVVRAILLEMQRRKIN-TGADGIRVDGGQDFKFF---- 396 (811)
T ss_pred ccccchhhHhhhh------hhcc-CCc----cc-cccccccChHHHHHHHHHHHhhcc-cCCceeEecccccceee----
Confidence 9998765443331 2221 111 22 258999999999999999999999 99999999998644221
Q ss_pred cccccCCcccccCcccChhHHHHHHHHHHhhhccCC---CEEEEEecCCCCC
Q 003390 476 QVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYP---EAVSIGEDVSGMP 524 (823)
Q Consensus 476 ~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p---~~~~igE~~~~~~ 524 (823)
+..-+..+..+ .||.+|.+.+..+.+ -.++|-|+--.||
T Consensus 397 --------nplt~~ve~DD--~YL~~M~dvvQ~I~~~~r~~f~IfEDGRPWP 438 (811)
T PF14872_consen 397 --------NPLTGRVEYDD--AYLLAMSDVVQEIGGARRLPFTIFEDGRPWP 438 (811)
T ss_pred --------cccccccccch--HHHHHHHHHHhhccccceeEEEEecCCCcCC
Confidence 11112222222 489999999988764 4688999865555
No 42
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.66 E-value=1.3e-16 Score=200.38 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=82.1
Q ss_pred ceEEEeecCCCCCCCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHH
Q 003390 303 LRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKA 382 (823)
Q Consensus 303 ~~IYE~hv~~f~~~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~a 382 (823)
..+|-+... ..++|.+++ ++||||++||||+|||+||+++...++|||+++||++|+|.|||.++|++||++|
T Consensus 744 ~atyrlq~~------~~~tf~~~~-~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~a 816 (1693)
T PRK14507 744 RATYRLQFH------KDFTFADAE-AILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAAL 816 (1693)
T ss_pred ceeEEEEeC------CCCCHHHHH-HHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHH
Confidence 447766544 237999999 6999999999999999999997555679999999999999999999999999999
Q ss_pred HHcCCEEEEEecccccCC
Q 003390 383 HELGLLVLMDIVHSHASN 400 (823)
Q Consensus 383 H~~GI~VIlDvV~NH~~~ 400 (823)
|++||+||||+|+||++.
T Consensus 817 h~~Gi~vilDiV~NH~~~ 834 (1693)
T PRK14507 817 KAHGLGQLLDIVPNHMGV 834 (1693)
T ss_pred HHCCCEEEEEecccccCC
Confidence 999999999999999984
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.63 E-value=7.3e-14 Score=170.85 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=75.3
Q ss_pred CCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCC----CHHHHHHHHHHHHHc-CCEEEEEe
Q 003390 319 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG----TPDDLKSLIDKAHEL-GLLVLMDI 393 (823)
Q Consensus 319 ~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~G----t~edlk~LV~~aH~~-GI~VIlDv 393 (823)
.|+|.+.. ++|+||++||||.||||||++-.. .++.|++.||+.+||.|| +.+||++||+++|++ ||+||+|+
T Consensus 128 mG~~~~w~-~~L~~ik~lGyN~IhftPI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 128 LGPLSEWE-PRLRVAKEKGYNMIHFTPLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEeCCCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 48998877 799999999999999999997554 468999999999999994 899999999999997 99999999
Q ss_pred cccccCCCc
Q 003390 394 VHSHASNNV 402 (823)
Q Consensus 394 V~NH~~~~~ 402 (823)
|+|||+.++
T Consensus 206 V~NHTa~ds 214 (1464)
T TIGR01531 206 VFNHTANNS 214 (1464)
T ss_pred eecccccCC
Confidence 999999876
No 44
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.8e-14 Score=162.51 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=75.5
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
+|.... +.||||++|||.|+|++||+..-..+.|||||+|...|+|.+|+.+.|.+||.++|++||++|+|+|+|||+.
T Consensus 17 tF~~A~-~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 17 TFADAR-ALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred CHHHHH-HhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 677777 6999999999999999999998777789999999999999999999999999999999999999999999987
Q ss_pred C
Q 003390 401 N 401 (823)
Q Consensus 401 ~ 401 (823)
.
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 6
No 45
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=99.50 E-value=2.1e-14 Score=126.60 Aligned_cols=79 Identities=33% Similarity=0.682 Sum_probs=65.1
Q ss_pred cCCcEEcCC--cEEEEEecCCcCeEEEEeecCC-CCCcccccc-cCCCceEEEEeCCCCCCCCCCCCC-CEEEEEEeCCC
Q 003390 181 KFGFIRSDT--GITYREWAPGAKSASLIGDFNN-WNPNADIMT-QNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPS 255 (823)
Q Consensus 181 ~lG~~~~~~--gv~fr~WAP~A~~V~L~gdfN~-w~~~~~~m~-r~~~GvWei~ip~~~~g~~~~~~g-~~y~~~~~~~~ 255 (823)
+||+|+.++ +++|++|||+|++|.|+++|++ |....++|+ +.+.|+|+++||+. +++| ..|+|+|+...
T Consensus 1 plG~~~~~~~~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~------~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 1 PLGAHYTEDGGGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGD------LPPGGYYYKYRIDGDD 74 (85)
T ss_dssp SSEEEEESSCTEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGC------GTTTT-EEEEEEEETT
T ss_pred CcCcEEECCCCEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCC------cCCCCEEEEEEEEeCC
Confidence 599999986 8999999999999999999999 888889999 68999999999963 3456 59999999887
Q ss_pred C-cccccCccc
Q 003390 256 G-IKDSIPAWI 265 (823)
Q Consensus 256 ~-~~~~~~~~~ 265 (823)
| ....+||||
T Consensus 75 g~~~~~~DPYA 85 (85)
T PF02922_consen 75 GETPEVVDPYA 85 (85)
T ss_dssp TEEEEET-TT-
T ss_pred CcEEEEeCCCC
Confidence 4 346788885
No 46
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.48 E-value=9.5e-14 Score=126.40 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCcEEcCCcEEEEEecCCcCeEEEEeecCCCCC----cccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-CC
Q 003390 182 FGFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP-SG 256 (823)
Q Consensus 182 lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~~----~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~-~~ 256 (823)
||+++..+|++|+||||+|++|.|++ |++|+. ..++|++.++|+|+++|++... |..|+|+++++ +.
T Consensus 1 lGa~~~~~~~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~-------g~~Y~y~i~~~~~~ 72 (100)
T cd02860 1 LGAVYTPEKTTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLE-------GYYYLYEVKVYKGE 72 (100)
T ss_pred CCCEEeCCCEEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccC-------CcEEEEEEEEeceE
Confidence 79999999999999999999999998 888862 3479999999999999997644 67999999876 33
Q ss_pred cccccCccceeeccCCCCCCCCcEEeCCC
Q 003390 257 IKDSIPAWIKFSVQAPGEIPYNGIYYDPP 285 (823)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 285 (823)
.....|||++....+.. ++++.|++
T Consensus 73 ~~~~~DPyA~~~~~~~~----~s~i~d~~ 97 (100)
T cd02860 73 TNEVVDPYAKALSANGE----RSVDLDDK 97 (100)
T ss_pred EEEEcCcccEeEeeCCC----ceEECChH
Confidence 45789999998765433 57888875
No 47
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=99.41 E-value=9.4e-13 Score=120.87 Aligned_cols=92 Identities=32% Similarity=0.659 Sum_probs=76.6
Q ss_pred hhcccccCCcEEcC----CcEEEEEecCCcCeEEEEeecCCCCCcccccccCC-CceEEEEeCCCCCCCCCCCCCCEEEE
Q 003390 175 FSRGYEKFGFIRSD----TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNE-FGVWEIFLPNNADGSPPIPHGSRVKI 249 (823)
Q Consensus 175 f~~~y~~lG~~~~~----~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~-~GvWei~ip~~~~g~~~~~~g~~y~~ 249 (823)
++..|+.||+|+.+ ++++||+|||+|++|.|+++||+|.....+|++.+ .|+|+++||... +|..|+|
T Consensus 3 ~~~p~~~lG~~~~~~~~~~~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~-------~~~~Y~~ 75 (106)
T cd02855 3 HERLYEKLGAHPTEVDGVSGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLG-------EGELYKY 75 (106)
T ss_pred chhHHHhcCCEEcccCCcCCEEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCC-------CCCEEEE
Confidence 45677899999988 88999999999999999999999977677999876 999999999643 4567999
Q ss_pred EEeCCCC-cccccCccceeeccCCC
Q 003390 250 HMDTPSG-IKDSIPAWIKFSVQAPG 273 (823)
Q Consensus 250 ~~~~~~~-~~~~~~~~~~~~~~~~~ 273 (823)
++...++ .....|||++...+.++
T Consensus 76 ~v~~~~g~~~~~~DPYa~~~~~~~~ 100 (106)
T cd02855 76 EILGADGHLPLKADPYAFYSELRPG 100 (106)
T ss_pred EEECCCCCEEEeeCCCceeeEeCCC
Confidence 9987543 45678999988777654
No 48
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.35 E-value=2.4e-12 Score=117.89 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=66.0
Q ss_pred cCCcEEcCCcEEEEEecCCcCeEEEEeecCCCC-CcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC-----
Q 003390 181 KFGFIRSDTGITYREWAPGAKSASLIGDFNNWN-PNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP----- 254 (823)
Q Consensus 181 ~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~-~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~----- 254 (823)
+||++++++|++|+||||+|++|.|++ |+++. ...++|++.++|+|+++|++... |..|+|+|+++
T Consensus 1 plGa~~~~~g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~-------g~~Y~y~i~g~~~p~~ 72 (103)
T cd02856 1 PLGATLDGEGCNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKA-------GQRYGFRVHGPYDPER 72 (103)
T ss_pred CCccEEeCCCeEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCC-------CCEEEEEECCccCccc
Confidence 489999999999999999999999999 66664 44578999899999999997644 67999999872
Q ss_pred ----CCcccccCccceeec
Q 003390 255 ----SGIKDSIPAWIKFSV 269 (823)
Q Consensus 255 ----~~~~~~~~~~~~~~~ 269 (823)
+.....+||||+.+.
T Consensus 73 ~~~~~~~~~~~DPYA~~~~ 91 (103)
T cd02856 73 GLRFNPAKLLLDPYARALD 91 (103)
T ss_pred CcccCCCeEEecCCcceEc
Confidence 223456788887664
No 49
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=99.32 E-value=3.1e-12 Score=115.22 Aligned_cols=89 Identities=35% Similarity=0.571 Sum_probs=71.8
Q ss_pred EEEeecCCCcEEEEEcC-----cEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCccccccccccC
Q 003390 719 YVSRKDEGDRVIVFERG-----NLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYD 793 (823)
Q Consensus 719 ~i~~~~~~~~Vlaf~R~-----~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~ 793 (823)
|+.+.+.+++|+||.|. .+|||+||++.+.+.+|++++|.+|+|+++||||+..|||++..... .+. ..
T Consensus 1 Wi~~~d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~~~~~-~v~---~~-- 74 (95)
T PF02806_consen 1 WIDHDDNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGKGNSG-EVT---VD-- 74 (95)
T ss_dssp EEEEEEESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSCSETS-EEE---EE--
T ss_pred CcccccCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEECCcccccCc-eEE---Ee--
Confidence 67788889999999993 39999999975478899999999999999999999999998763222 221 11
Q ss_pred CCCeEEEEEEcCceEEEEEEc
Q 003390 794 DQPHSFLVYAPSRTAVVYALA 814 (823)
Q Consensus 794 ~~~~~i~l~lp~~s~~V~~~~ 814 (823)
..+.++|+|||++++||+.+
T Consensus 75 -~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 75 -SNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp -TTSEEEEEESTTEEEEEEEE
T ss_pred -eCCEEEEEECCCEEEEEEEc
Confidence 23349999999999999874
No 50
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.28 E-value=2.1e-11 Score=107.57 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=65.8
Q ss_pred CcEEcC-CcEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCccccc
Q 003390 183 GFIRSD-TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSI 261 (823)
Q Consensus 183 G~~~~~-~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~~~~~~ 261 (823)
|+++.+ ++++|+||||+|++|.|++. + + ...+|++.+.|+|++++++. . |..|+|+++. .....
T Consensus 1 Ga~~~~~~~~~F~vwAP~A~~V~l~l~-~-~--~~~~m~~~~~G~W~~~v~~~-~-------g~~Y~y~v~~---~~~~~ 65 (85)
T cd02853 1 GARPLGAGGTRFRLWAPDAKRVTLRLD-D-G--EEIPMQRDGDGWFEAEVPGA-A-------GTRYRYRLDD---GTPVP 65 (85)
T ss_pred CCeEcCCCCEEEEEeCCCCCEEEEEec-C-C--CcccCccCCCcEEEEEeCCC-C-------CCeEEEEECC---CcCCC
Confidence 788887 79999999999999999983 2 3 35789999999999999976 5 5689999973 35678
Q ss_pred CccceeeccCCCCCCCCcEEeCC
Q 003390 262 PAWIKFSVQAPGEIPYNGIYYDP 284 (823)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~d~ 284 (823)
|||+++....... +|+++||
T Consensus 66 DP~a~~~~~~~~~---~s~v~~~ 85 (85)
T cd02853 66 DPASRFQPEGVHG---PSQVVDP 85 (85)
T ss_pred CCccccCCCCCCC---CeEeeCc
Confidence 9999875333222 5787764
No 51
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.11 E-value=2.6e-10 Score=107.19 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=61.9
Q ss_pred CcEEcCCcEEEEEecCCcCeEEEEeecCCCCC----cccccccCC---CceEEEEeCCCCCCCCCCCCCCEEEEEEeC--
Q 003390 183 GFIRSDTGITYREWAPGAKSASLIGDFNNWNP----NADIMTQNE---FGVWEIFLPNNADGSPPIPHGSRVKIHMDT-- 253 (823)
Q Consensus 183 G~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~~----~~~~m~r~~---~GvWei~ip~~~~g~~~~~~g~~y~~~~~~-- 253 (823)
|++++++|++|+||||+|++|.|++ |++|+. ...+|.+.+ +|+|+++|++... |..|+|+|++
T Consensus 1 Ga~~~~~g~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~-------g~~Y~y~v~g~~ 72 (119)
T cd02852 1 GATIDAGGVNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKP-------GQLYGYRVDGPF 72 (119)
T ss_pred CCeEeCCCEEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCC-------CCEEEEEECCCC
Confidence 7899999999999999999999999 888752 235787655 6999999997654 6689999985
Q ss_pred --CCCc-----ccccCccceeec
Q 003390 254 --PSGI-----KDSIPAWIKFSV 269 (823)
Q Consensus 254 --~~~~-----~~~~~~~~~~~~ 269 (823)
..|. ...+|||++...
T Consensus 73 ~p~~g~~~~~~~~~~DPYA~a~~ 95 (119)
T cd02852 73 EPEQGHRFDPSKVLLDPYAKAVS 95 (119)
T ss_pred CCCcccccCCCcEEECCCcCeEc
Confidence 2232 226788887653
No 52
>PRK05402 glycogen branching enzyme; Provisional
Probab=99.06 E-value=1.4e-10 Score=140.56 Aligned_cols=82 Identities=13% Similarity=0.124 Sum_probs=71.1
Q ss_pred hhhcccccCCcEEcCCcEEEEEecCCcCeEEEEeecCCCCCcccccccC-CCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003390 174 AFSRGYEKFGFIRSDTGITYREWAPGAKSASLIGDFNNWNPNADIMTQN-EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 252 (823)
Q Consensus 174 ~f~~~y~~lG~~~~~~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~-~~GvWei~ip~~~~g~~~~~~g~~y~~~~~ 252 (823)
...+.|+.||+|....|++|+||||+|++|+|+||||+ +..++|++. +.|+|+++|| ... |..|||+|.
T Consensus 13 ~~~~~~~~lGah~~~~g~~f~vwaP~A~~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~-------g~~YKy~i~ 82 (726)
T PRK05402 13 RHHDPFSVLGPHPTGAGLVVRALLPGAEEVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKG-------PFDYRLRVT 82 (726)
T ss_pred ccCCHHHhcCCCCCCCcEEEEEECCCCeEEEEEeecCC--CccccceEcCCCceEEEEec-CCC-------CCCeEEEEE
Confidence 67788999999999889999999999999999999995 567899874 7899999999 665 568999998
Q ss_pred CCCCc-ccccCccce
Q 003390 253 TPSGI-KDSIPAWIK 266 (823)
Q Consensus 253 ~~~~~-~~~~~~~~~ 266 (823)
+ +|. ....|||+.
T Consensus 83 ~-~g~~~~k~DPyaf 96 (726)
T PRK05402 83 W-GGGEQLIDDPYRF 96 (726)
T ss_pred e-CCceeEecccccc
Confidence 8 664 567888886
No 53
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.91 E-value=3.5e-09 Score=93.36 Aligned_cols=66 Identities=24% Similarity=0.333 Sum_probs=49.2
Q ss_pred CcEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCC-CEEEEEEeCCCCcccccCcccee
Q 003390 189 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHG-SRVKIHMDTPSGIKDSIPAWIKF 267 (823)
Q Consensus 189 ~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g-~~y~~~~~~~~~~~~~~~~~~~~ 267 (823)
+.++|++|||.|++|.|+++||+|. .++|++.++|+|+++++.... | ..|+|.+++ ....||+++.
T Consensus 6 ~~v~F~vwAP~A~~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~~-------g~Y~Y~~~vdg----~~~~DP~s~~ 72 (85)
T cd02858 6 RTVTFRLFAPKANEVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLAP-------GIYTYSFLVDG----VRVIDPSNPT 72 (85)
T ss_pred CcEEEEEECCCCCEEEEEeecCCCc--cEeCeECCCeEEEEEECCCCC-------cEEEEEEEECC----eEecCCCCCc
Confidence 4599999999999999999998653 579999999999999964322 2 356666653 3345555443
No 54
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.83 E-value=1.1e-08 Score=89.59 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=46.2
Q ss_pred cEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003390 190 GITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 253 (823)
Q Consensus 190 gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~ 253 (823)
-++|++|||.|++|+|+|+||+|+ ..+|++.+.|+|+++++ ...|. ..|||.+++
T Consensus 3 ~vtf~~~ap~a~~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G~------y~Ykf~vdg 57 (82)
T cd02861 3 PVVFAYRGPEADSVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPGR------YEYKFVVDG 57 (82)
T ss_pred cEEEEEECCCCCEEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCCc------EEEEEEECC
Confidence 379999999999999999999997 57999988899999997 33332 279998863
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.52 E-value=7.6e-07 Score=97.58 Aligned_cols=188 Identities=19% Similarity=0.252 Sum_probs=102.4
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccC-CCCCCCCCccccccCcCCCCC--CHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~~~a~~~~~G--t~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-..+. +.|+.|+++|+|+|.+-=-... ..|.| -+-|...+......+ +-|=|+.||++||++||.|.-=+.++.
T Consensus 17 ~~~~~~-~~l~~l~~~~~N~V~~qVr~~gda~Y~S-~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 17 SKEQID-EMLDDLKSAGFNAVFVQVRPRGDALYPS-DIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEEeCcEEEecc-cccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 334555 7999999999999986321111 01111 111111111111111 257799999999999999998775443
Q ss_pred cCCCccccccCCCCCCCCccccCCCCCccc-----CCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccc
Q 003390 398 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWM-----WDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTH 472 (823)
Q Consensus 398 ~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~-----w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~ 472 (823)
..... +......+.++.....+.... .+..-||-++||||+||++.++-.++.|.|||+.||-.-.. +..
T Consensus 95 ~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp-~~~ 169 (311)
T PF02638_consen 95 NAPDV----SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYP-PPS 169 (311)
T ss_pred CCCch----hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecccccc-ccc
Confidence 32211 001011122221111110000 12235899999999999999999999999999999943211 111
Q ss_pred cCccccccCCcccccC-----cccC-------hhHH-HHHHHHHHhhhccCCCEEE
Q 003390 473 HGLQVAFTGNYSEYFG-----FATD-------VDAV-VYLMLVNDMIHGLYPEAVS 515 (823)
Q Consensus 473 ~g~~~~f~~~~~~~~g-----~~~d-------~~~~-~fl~~~~~~v~~~~p~~~~ 515 (823)
.|....-...|..+.| ...+ .+.+ .|++++.+.|++++|++.+
T Consensus 170 ~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~ 225 (311)
T PF02638_consen 170 FGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKF 225 (311)
T ss_pred CCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 1221100011222322 1111 1122 7889999999999998654
No 56
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.48 E-value=2.5e-07 Score=103.29 Aligned_cols=82 Identities=23% Similarity=0.408 Sum_probs=72.0
Q ss_pred CCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCC------HHHHHHHHHHHH-HcCCEEEEE
Q 003390 320 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------PDDLKSLIDKAH-ELGLLVLMD 392 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt------~edlk~LV~~aH-~~GI~VIlD 392 (823)
|.|..-. ++|+.++++|||.|+++|+++-.. ++.-|.+.|...++|.|.. .+++++||.+++ +.||.+|.|
T Consensus 19 G~~~~W~-~~l~~~~~~GYNmIHftPlq~~G~-S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 19 GPFSDWE-KHLKVISEKGYNMIHFTPLQERGE-SNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred CCHhHHH-HHHHHHHHcCCcEEEecccccCCC-CCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 7777776 699999999999999999999765 3457999999999998775 379999999995 799999999
Q ss_pred ecccccCCCcc
Q 003390 393 IVHSHASNNVL 403 (823)
Q Consensus 393 vV~NH~~~~~~ 403 (823)
||+|||+.++.
T Consensus 97 vV~NHtA~nS~ 107 (423)
T PF14701_consen 97 VVLNHTANNSP 107 (423)
T ss_pred EeeccCcCCCh
Confidence 99999999873
No 57
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.47 E-value=5.7e-07 Score=78.00 Aligned_cols=60 Identities=33% Similarity=0.455 Sum_probs=50.7
Q ss_pred CcEEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003390 189 TGITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 255 (823)
Q Consensus 189 ~gv~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~ 255 (823)
++++|++|||.|++|.|+++||+| ...++|++.+.|+|++.|+... +++..|+|++....
T Consensus 4 ~~v~f~v~ap~a~~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~------~~~~~Y~~~v~~~~ 63 (83)
T cd02688 4 KGVTFTVRGPKAQRVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS------PGKYQYKYVLDGGK 63 (83)
T ss_pred ccEEEEEECCCCCEEEEEEEECCC-CCcccCEECCCceEEEEEcCCC------CCCeEEEEEEeCCC
Confidence 579999999999999999999885 3468999999999999999654 24778999987654
No 58
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.43 E-value=1.1e-06 Score=77.90 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCCCCcE-EEEe-ecCCCcEEEEEc----CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCC
Q 003390 699 FDRAMQHLEEKYGFMTSEHQ-YVSR-KDEGDRVIVFER----GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPL 772 (823)
Q Consensus 699 f~r~Li~LRk~~~~l~~g~~-~i~~-~~~~~~Vlaf~R----~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~ 772 (823)
|||+||+||+++|+|+.+.. .+.. ....+.++++.| +.++|++||++ ++ ..++ ....++.++.|+...
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~-~~---~~~~--~~~~~~~l~~s~~~~ 74 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSD-EP---VTVP--EGPWGEVLFSSEPAR 74 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SS-S----EEEE--TSCCEEEEEECSCSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCC-Cc---EEcc--CCCCCeEEEcCCCcc
Confidence 79999999999999998833 2322 134566888888 47999999994 22 3443 445677777765543
Q ss_pred cCCccccCCCccccccccccCCCCeEEEEEEcCceEEEE
Q 003390 773 FGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVY 811 (823)
Q Consensus 773 ~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~ 811 (823)
+++ .++|||.+++||
T Consensus 75 ~~~------------------------~~~L~p~~~~v~ 89 (89)
T PF11941_consen 75 AGG------------------------AGTLPPWSVVVL 89 (89)
T ss_dssp E--------------------------EEEE-TTEEEEE
T ss_pred ccc------------------------CceECCCEEEEC
Confidence 222 489999999986
No 59
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.26 E-value=4.4e-05 Score=88.61 Aligned_cols=238 Identities=16% Similarity=0.227 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEecc--cccCCCccccccCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 003390 373 DDLKSLIDKAHELGLLVLMDIVH--SHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 439 (823)
Q Consensus 373 edlk~LV~~aH~~GI~VIlDvV~--NH~~~~~~~~~~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~~ 439 (823)
++++++.+.||++||++|.|+.+ ++-|.+.......| -|.+|.+|... | ..|+.|.+|+..-.
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~--G--Q~WG~P~y~w~~l~ 273 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSET--G--QLWGNPVYNWDALR 273 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcc--c--CcCCCCCcCHHHHH
Confidence 34566777899999999999986 33333321111111 35666677543 3 35788887764211
Q ss_pred --HHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 003390 440 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 517 (823)
Q Consensus 440 --V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~ig 517 (823)
--+..++-++.-++ .+|.+|+|.+..+... .-++.+ .-....|.....+..+++..+...+ +++.+||
T Consensus 274 ~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~-W~IP~~---~~~a~~G~~v~~p~~~l~~~l~~e~----~~~~vig 343 (497)
T PRK14508 274 KDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAY-WEIPAG---EKTAINGRWVPGPGKDLFEAVKEEL----GDLPIIA 343 (497)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCC---CCCCCCCeeecCCHHHHHHHHHHHh----CCCCEEE
Confidence 11234445555555 7999999987543211 011111 0001112223334456666555444 6789999
Q ss_pred ecCCCCCCceecccc-CCc-ccchhhhHHHHHHHHHHHhhccchhhhhhhHhhhccccccccceecccCcCcccccccch
Q 003390 518 EDVSGMPTFCIPVQD-GGV-GFDYRLQMAIADKWIELLKKRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTI 595 (823)
Q Consensus 518 E~~~~~~~~~~~~~~-ggl-gFd~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~v~y~enHD~~r~g~~t~ 595 (823)
|+.+.-|...+.... -|+ |+. +. .+.... .... ......++..+|.|+.+||+.++.
T Consensus 344 EDLG~vp~~V~~~l~~~gi~g~~------Vl-----~f~~~~---~~~~---~~~p~~~~~~~v~~~~THD~~Tl~---- 402 (497)
T PRK14508 344 EDLGVITPDVEELRDRFGFPGMK------IL-----QFAFDG---DSDN---PYLPHNYPRNSVVYTGTHDNDTTV---- 402 (497)
T ss_pred eECCCCCHHHHHHHHHcCCCccE------EE-----EecCCC---CCCC---CCCCcCCCCCeEEECCCCCCHHHH----
Confidence 998655543322221 111 110 00 000000 0000 011124567899999999998652
Q ss_pred hhhc-cChhH---HHhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCcceEeecCcccCCCC
Q 003390 596 AFWL-MDKDM---YDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPE 652 (823)
Q Consensus 596 ~~~~-~~~~~---~~~~~~~~~~~~~~~~~~a~~k~a~~l~ltlpG~p~l~y~G~E~G~~~ 652 (823)
.+|. .+.+. +..+.+... . ...+..+.-+++..+-.-+|+-+=|=+|+.+
T Consensus 403 gWw~~~~~~~~~~~~~~l~~~~-----~--~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~ 456 (497)
T PRK14508 403 GWWESLDPEERKRVADYLGRSS-----E--EEIHWALIRLALASVADLAILPMQDLLGLGS 456 (497)
T ss_pred HHHhCCCHHHHHHHHHHhccCC-----c--hhHHHHHHHHHhcCCchheeeeHHHHhCCCC
Confidence 2231 11111 111111100 0 1233444455666777667766666667653
No 60
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.17 E-value=9.1e-06 Score=77.62 Aligned_cols=121 Identities=23% Similarity=0.278 Sum_probs=82.1
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcccccc
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 407 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~ 407 (823)
+.+++||++|+|+|.+..=-- +.|-|-|+.....+|.++ .+-|+++|++||++||+|+.=+-++ .-...
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h----~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~----- 72 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCH----GGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDA----- 72 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccc----cEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHH-----
Confidence 578999999999998754211 113366777777788887 7889999999999999999766655 21110
Q ss_pred CCCCCCCCccccCCCCC--------cccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcc
Q 003390 408 MFDGTDGHYFHSGSRGY--------HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 464 (823)
Q Consensus 408 ~fdg~~~~yf~~~~~g~--------~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~ 464 (823)
+ ...|.|+..+..|. .+.|-..++| + ..+++++..++--++.|.+|||=||.
T Consensus 73 -~-~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n--s-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 73 -A-ERHPEWFVRDADGRPMRGERFGYPGWYTCCLN--S-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred -H-HhCCceeeECCCCCCcCCCCcCCCCceecCCC--c-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 0 01233443333322 1224344554 3 45689999999999999999998883
No 61
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=98.01 E-value=2.3e-05 Score=91.42 Aligned_cols=194 Identities=18% Similarity=0.260 Sum_probs=99.5
Q ss_pred CCCCH-HhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCC-------------------------
Q 003390 318 IINTY-ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT------------------------- 371 (823)
Q Consensus 318 ~~G~~-~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt------------------------- 371 (823)
++|+| ..+. ..++.+++.|+..+||+|+.......++-|.+.+=|+.+|-|=.
T Consensus 13 GIGDfg~dl~-~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~~~~~~~~~~~~~~~~~~~ 91 (496)
T PF02446_consen 13 GIGDFGDDLY-QFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEFGLLDEAEEIEELAELRDA 91 (496)
T ss_dssp SS--SSHHHH-HHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHTTSS-----GGGS-S---S
T ss_pred ceecHHHHHH-HHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhccccchhhhhhhccccccc
Confidence 78999 7777 69999999999999999999876656668888888877764421
Q ss_pred --------------------------------------------------------------------------------
Q 003390 372 -------------------------------------------------------------------------------- 371 (823)
Q Consensus 372 -------------------------------------------------------------------------------- 371 (823)
T Consensus 92 ~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~f~~F~~~~~~wL~~yA~f~al~~~~~~~~w~~WP~~~~~~~~~~~l~~ 171 (496)
T PF02446_consen 92 DRVDYEAVAALKRRALRKAFERFKEQAERREEFEAFCEQNGEWLEDYALFCALKEKFGGAPWREWPEEELRDRDSEALAA 171 (496)
T ss_dssp SB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSGGGS--HHHHTT-HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhcchhHhHHHHHHHHHHhCCCCcccCCHHHHhhhcHHHHHH
Confidence
Q ss_pred -------------------HHHHHHHHHHHHHcCCEEEEEeccc--ccCCCccccccCC-----CCCCCCccccCCCCCc
Q 003390 372 -------------------PDDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNMF-----DGTDGHYFHSGSRGYH 425 (823)
Q Consensus 372 -------------------~edlk~LV~~aH~~GI~VIlDvV~N--H~~~~~~~~~~~f-----dg~~~~yf~~~~~g~~ 425 (823)
-++++++.+.|+++||++|.|+.+- +-|.+.......| -|.+|.+|.. .|.
T Consensus 172 ~~~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~~~aGaPPD~fs~--~GQ- 248 (496)
T PF02446_consen 172 FREEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLDASAGAPPDYFSP--TGQ- 248 (496)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-EEEEE-SSSSSS--S-E-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCcCeeCCCCCCCCc--ccc-
Confidence 0678888899999999999999853 3232221111122 2566777753 233
Q ss_pred ccCCCCCCCCCCHHH--HHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHH
Q 003390 426 WMWDSRLFNYGSWEV--LRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 503 (823)
Q Consensus 426 ~~w~~~~ln~~~~~V--~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~ 503 (823)
.|+.|.+|+..-.- -+..++-+++-++ .+|++|+|.+..+... .-++. +......|.....+..+++..+.
T Consensus 249 -~WG~P~y~w~~l~~~gy~ww~~rl~~~~~--~~d~lRIDH~~Gf~r~-W~IP~---~~~~a~~G~~~~~p~~~ll~~l~ 321 (496)
T PF02446_consen 249 -NWGNPPYNWDALKEDGYRWWIDRLRANMR--LFDALRIDHFRGFFRY-WWIPA---GGETAIDGAWVRYPGEDLLAILA 321 (496)
T ss_dssp -EEEEE-B-HHHHHHTTTHHHHHHHHHHHC--C-SEEEEETGGGGTEE-EEEET---T-SSSTT-EEEE--HHHHHHHHH
T ss_pred -cCCCCCcCHHHHHHcCCHHHHHHHHHHHH--hCCchHHHHHHHHHhe-eEecC---CCCCCCCceeecchHHHHHHHHH
Confidence 46777776532110 1233444444444 8999999988654321 11221 11111222223334456666666
Q ss_pred HhhhccCCCEEEEEecCCCCCC
Q 003390 504 DMIHGLYPEAVSIGEDVSGMPT 525 (823)
Q Consensus 504 ~~v~~~~p~~~~igE~~~~~~~ 525 (823)
..... ++.+|||+.+..|.
T Consensus 322 ~e~~r---~~~vigEDLG~vp~ 340 (496)
T PF02446_consen 322 LESGR---DCLVIGEDLGTVPP 340 (496)
T ss_dssp HHHS----S-EEEE--TSS--H
T ss_pred HHcCC---CCcEEEeecCCCcH
Confidence 55533 78999999865443
No 62
>PLN02635 disproportionating enzyme
Probab=97.92 E-value=0.00014 Score=84.59 Aligned_cols=139 Identities=18% Similarity=0.253 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHcCCEEEEEec--ccccCCCccccccCC-----------CCCCCCccccCCCCCcccCCCCCCCCCCH-
Q 003390 373 DDLKSLIDKAHELGLLVLMDIV--HSHASNNVLDGLNMF-----------DGTDGHYFHSGSRGYHWMWDSRLFNYGSW- 438 (823)
Q Consensus 373 edlk~LV~~aH~~GI~VIlDvV--~NH~~~~~~~~~~~f-----------dg~~~~yf~~~~~g~~~~w~~~~ln~~~~- 438 (823)
++++++-+.||++||++|-|+. ++|-|.+.......| -|.+|.||... | ..|+.|.+|+..-
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~--G--Q~WG~P~y~w~~l~ 299 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSET--G--QLWGSPLYDWKAMA 299 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcc--c--ccCCCcCcCHHHHH
Confidence 4566788889999999999999 455555532111112 25667777643 3 3578888776421
Q ss_pred -HHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 003390 439 -EVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 517 (823)
Q Consensus 439 -~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~ig 517 (823)
.--+..++-+++=++ .+|.+|+|.+..+... .-++. +.-....|.....+..+++. .+.+..+++.+||
T Consensus 300 ~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~-W~IP~---g~~ta~~G~wv~~Pg~~l~~----~l~~~~~~~~vIa 369 (538)
T PLN02635 300 KDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGY-WAVPA---DAKTAMNGRWKVGPGKSFFD----AIKKAVGKIDIIA 369 (538)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhhee-eeccC---CCCCCCCCeeeeCCHHHHHH----HHHHHcCCCCEEE
Confidence 111234444555555 7899999987543211 01111 00011123333444555554 3444556789999
Q ss_pred ecCCCCCC
Q 003390 518 EDVSGMPT 525 (823)
Q Consensus 518 E~~~~~~~ 525 (823)
|+.+--+.
T Consensus 370 EDLG~I~~ 377 (538)
T PLN02635 370 EDLGVITE 377 (538)
T ss_pred eeCCCCCH
Confidence 99865443
No 63
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.88 E-value=2.2e-05 Score=90.46 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=62.4
Q ss_pred CCceEEEeecCCCCC---CCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCC-------CCCccccccCc----C
Q 003390 301 KSLRIYEAHVGMSST---EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYAS-------FGYHVTNFFAP----S 366 (823)
Q Consensus 301 ~~~~IYE~hv~~f~~---~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~-------~GY~~~~~~a~----~ 366 (823)
..-+|||-+-- |.. .+.--+..-|+ +-.+-+|++|||..||-|-+-+..+++ -||.-+|=|.+ .
T Consensus 563 DSqvIYEgFSN-FQ~~~t~~~eytN~~IA-~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~p 640 (809)
T PF02324_consen 563 DSQVIYEGFSN-FQDFPTTPSEYTNVVIA-KNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKP 640 (809)
T ss_dssp HT-EEEE---T-TB---SSGGGSHHHHHH-HTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-
T ss_pred hcchhhccccc-cccCCCChHHHHHHHHH-HhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCC
Confidence 45689996532 222 22223555666 688999999999999999988776665 48999988875 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 003390 367 SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 367 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
..|||.+||+.-|+++|+.||+||-|||++.+..
T Consensus 641 tKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 641 TKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 5899999999999999999999999999987754
No 64
>PLN02950 4-alpha-glucanotransferase
Probab=97.88 E-value=0.00097 Score=82.52 Aligned_cols=145 Identities=12% Similarity=0.130 Sum_probs=79.7
Q ss_pred cEEEEEecCC---cCeEEEEee---cCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCcccccC
Q 003390 190 GITYREWAPG---AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIP 262 (823)
Q Consensus 190 gv~fr~WAP~---A~~V~L~gd---fN~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~~~~~~~ 262 (823)
.++|++=+|+ -++|.|+|+ .-+|+.. +..|.......|++.+.-.. +.. ...|||.+...+|....-.
T Consensus 154 ~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~-~~~----~~EYKyv~~~~~g~v~WE~ 228 (909)
T PLN02950 154 VVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPK-SDF----PIKYKYALQTAEGLVSLEL 228 (909)
T ss_pred eEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecC-CCc----eEEEEEEEEcCCCceEEee
Confidence 3899999995 578999985 4689864 46787777899999986322 111 2489998776554321000
Q ss_pred ccceeeccCCCCCCCCcEEe-CCCccccccccCCCCCCCCCceEEEeecCCCCCC--CCCCCHHhhHhhhhhhHHHcCCC
Q 003390 263 AWIKFSVQAPGEIPYNGIYY-DPPEEEKYVFQHPQPKKPKSLRIYEAHVGMSSTE--PIINTYANFRDDVLPRIKRLGYN 339 (823)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~IYE~hv~~f~~~--~~~G~~~~~~~~~L~yLk~LGvt 339 (823)
-.......+........++ .+. ..++. +.....=++ +|+-+-... -++|+|.++. +.++.+++.|.+
T Consensus 229 -g~NR~~~~p~~~~~~~~~~~~~~----~~~~~--~~~R~~Gi~--~~l~SLrS~~s~GIGDf~dl~-~~id~~a~~G~~ 298 (909)
T PLN02950 229 -GVNRELSLDSSSGKPPSYIVASD----GAFRE--MPWRGAGVA--VPVFSIRSEEDVGVGEFLDLK-LLVDWAVKSGLH 298 (909)
T ss_pred -CCCceeecCcccCCceEEEeccc----ccccC--CCccceEEE--EecccCCCCCCCCeeCHHHHH-HHHHHHHHcCCC
Confidence 0000111111100111111 110 01111 111111111 122222122 3789999888 699999999999
Q ss_pred EEEECCcccC
Q 003390 340 AVQIMAVQEH 349 (823)
Q Consensus 340 ~I~L~Pi~e~ 349 (823)
.|||+|+.+.
T Consensus 299 ~~QilPl~~t 308 (909)
T PLN02950 299 LVQLLPVNDT 308 (909)
T ss_pred EEEECCCCCC
Confidence 9999999653
No 65
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=0.00016 Score=81.08 Aligned_cols=183 Identities=19% Similarity=0.234 Sum_probs=104.7
Q ss_pred HHhhHhhhhhhHHHcCCCEEEECCcccCC-CCCC-----CCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003390 322 YANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYAS-----FGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 395 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~-~~~~-----~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 395 (823)
=.++. +.|+.|+.||+|+|+.-=.-... .|.| .++. ...+.+++ .-|=|..+|++||++||+|+-=+-+
T Consensus 63 ~~el~-~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~-~~~~~~~~---g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 63 RQELK-DILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL-PGVLGVDP---GYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred HHHHH-HHHHHHHHcCCceeEEEEecCccccccccccccccCc-CcccCCCC---CCChHHHHHHHHHhcCCeeeechhh
Confidence 34666 59999999999999864322210 1111 2222 11122333 3377999999999999999988776
Q ss_pred cccCCCccccccCCCCCCCCccccCCCC----CcccC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccc
Q 003390 396 SHASNNVLDGLNMFDGTDGHYFHSGSRG----YHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMY 470 (823)
Q Consensus 396 NH~~~~~~~~~~~fdg~~~~yf~~~~~g----~~~~w-~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~ 470 (823)
--++........ ..+.+......+ .+..| ...-||=++|+|+++|.+.+.--+..|.|||+.||-.-.+.
T Consensus 138 ~~~a~~~s~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~- 212 (418)
T COG1649 138 YRMAPPTSPLTK----RHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYP- 212 (418)
T ss_pred cccCCCCChhHh----hCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeeccc-
Confidence 666654311100 011111111110 01111 33458999999999999999999999999999999753311
Q ss_pred cccCccccccCC---cccccCcccChh---------HHHHHHHHHHhhhccCCCEEE
Q 003390 471 THHGLQVAFTGN---YSEYFGFATDVD---------AVVYLMLVNDMIHGLYPEAVS 515 (823)
Q Consensus 471 ~~~g~~~~f~~~---~~~~~g~~~d~~---------~~~fl~~~~~~v~~~~p~~~~ 515 (823)
.+.|.... +-. +..--+...+.. .-.|++.++..|++.+|++.+
T Consensus 213 ~~~gy~~~-~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~ 268 (418)
T COG1649 213 IPFGYDPD-TVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKF 268 (418)
T ss_pred CccccCch-HHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEE
Confidence 11111000 000 000000111222 126889999999999998664
No 66
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=97.83 E-value=4.1e-05 Score=66.53 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=43.0
Q ss_pred EEEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003390 191 ITYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 253 (823)
Q Consensus 191 v~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~ 253 (823)
++|+..+ .|++|+|+|+||+|+. ..||++...| |++.++ ...|. ..|||.+++
T Consensus 4 v~f~~~~-~a~~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g~------y~YkF~Vdg 56 (79)
T cd02859 4 TTFVWPG-GGKEVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPGK------YQYKFIVDG 56 (79)
T ss_pred EEEEEcC-CCcEEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCCC------EEEEEEECC
Confidence 7898888 8999999999999987 6899998877 999986 23332 378888753
No 67
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.72 E-value=0.0019 Score=82.73 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCEE--EEEeccc--ccCCCcccc-----ccCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 003390 373 DDLKSLIDKAHELGLLV--LMDIVHS--HASNNVLDG-----LNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 441 (823)
Q Consensus 373 edlk~LV~~aH~~GI~V--IlDvV~N--H~~~~~~~~-----~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~--V~ 441 (823)
++++++-+.|+++||+| |-|+.+. +-|.+.... +..--|.+|.+|... | ..|+.+.+|+..-. --
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~dsadvWa~~~~f~l~~~~GaPPD~fs~~--G--Q~WG~P~y~w~~l~~~gy 1007 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPDGADAWAERSCFALDVSIGAPPDYFNPE--G--QNWGLPPYDPRALRRDGY 1007 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCCcHHHhcCHHHhcCCCccCCCCCcCCcc--c--ccCCCcCcCHHHHHhcCc
Confidence 46677888899999999 9999863 333332111 112236777787543 3 35788877754211 11
Q ss_pred HHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 003390 442 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 521 (823)
Q Consensus 442 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~ 521 (823)
+..++-++.-++ ++|++|+|-+..+... .-++.+-+ ...|.....+..+++..+...... .++.+|||+.+
T Consensus 1008 ~~w~~rlr~~~~--~~~~lRIDH~~G~~r~-W~IP~~~~----a~~G~~v~~P~~~l~~~l~~e~~r--~~~~vIgEDLG 1078 (1221)
T PRK14510 1008 RWFIERIRANMR--HAGALRIDHVRGLERL-FEVPQGAS----AKEGAYLKGPGEELFGQVALESQR--AQCPVIGEDLG 1078 (1221)
T ss_pred HHHHHHHHHHHH--hCCeEEeccHHhhHHh-eeCCCCCC----CCCCeEEECCHHHHHHHHHHHhCc--cCCcEEEeeCC
Confidence 235555665566 8999999987654211 01111111 111222223344566666544432 26899999986
Q ss_pred CCCC
Q 003390 522 GMPT 525 (823)
Q Consensus 522 ~~~~ 525 (823)
.-|.
T Consensus 1079 ~vp~ 1082 (1221)
T PRK14510 1079 TIPS 1082 (1221)
T ss_pred cCCH
Confidence 5443
No 68
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.31 E-value=0.005 Score=69.64 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=79.9
Q ss_pred HhhHhhhhhhHHHcCCCEEEECCcccC---CCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 003390 323 ANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 399 (823)
Q Consensus 323 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~---~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~ 399 (823)
..+. +.++.++++||+.+.|===+-. ....+.|.+..| ..+| |+.|+.|++.+|++||+.=|=+-+--++
T Consensus 58 ~~i~-~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~----~~kF--P~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKIL-ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD----PKKF--PNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHH-HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB----TTTS--TTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC----hhhh--CCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 3444 5788889999998876322111 011122322222 2355 4579999999999999999998776665
Q ss_pred CCccccccCCCCCCCCccccCCCCCcc-cCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccc
Q 003390 400 NNVLDGLNMFDGTDGHYFHSGSRGYHW-MWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 468 (823)
Q Consensus 400 ~~~~~~~~~fdg~~~~yf~~~~~g~~~-~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 468 (823)
.++. .+.. .+.|....+..... ......||+.+|+|+++|.+.+...++++|||.|.+|....+
T Consensus 131 ~~S~----l~~~-hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~ 195 (394)
T PF02065_consen 131 PDSD----LYRE-HPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDI 195 (394)
T ss_dssp SSSC----HCCS-SBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-T
T ss_pred chhH----HHHh-CccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCC
Confidence 5431 1111 12233221111111 112235999999999999999999999999999999997655
No 69
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.25 E-value=0.0012 Score=72.81 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=86.0
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCcc-ccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHV-TNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~-~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
+-..+. +.++.+++.|| ++|||- ..-.-...++||.. .+ |..|+ +|- +.++||+++|++|++|++-+ ..
T Consensus 21 s~~~v~-~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i-~P 93 (317)
T cd06594 21 GTDKVL-EALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYI-NP 93 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEe-cC
Confidence 556776 68889999887 778885 32110112344421 12 34443 554 46799999999999999944 45
Q ss_pred ccCCCccccccCC-CCCCCCccccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 397 HASNNVLDGLNMF-DGTDGHYFHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 397 H~~~~~~~~~~~f-dg~~~~yf~~~~~g-----~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
++..+.... | ++....||-....+ ..|.+....+|+.||++++...+.++..+.++|||||-+|.-
T Consensus 94 ~v~~~~~~~---y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 165 (317)
T cd06594 94 YLADDGPLY---YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFG 165 (317)
T ss_pred ceecCCchh---HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCC
Confidence 655442110 1 12223344433322 222334567999999999999999998866699999999964
No 70
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.19 E-value=0.0054 Score=67.41 Aligned_cols=174 Identities=12% Similarity=0.166 Sum_probs=102.3
Q ss_pred CHHhhHhhhhhhHHHcC--CCEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLG--YNAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LG--vt~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-..+. +.++.+++.| +++|+|=.=+.. +|.-.+ |..+ .+|-. .++||+++|++||+|++-+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~~~lD~~w~~------~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~ 89 (308)
T cd06593 22 DEEEVN-EFADGMRERNLPCDVIHLDCFWMK------EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-Y 89 (308)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEeccccc------CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-C
Confidence 445565 6889999999 566776443321 121122 4444 47754 589999999999999999876 5
Q ss_pred cCCCccccccCCC-CCCCCccccCCCCCc---ccC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccccccccc
Q 003390 398 ASNNVLDGLNMFD-GTDGHYFHSGSRGYH---WMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYT 471 (823)
Q Consensus 398 ~~~~~~~~~~~fd-g~~~~yf~~~~~g~~---~~w--~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~ 471 (823)
++.++. .|. +....||-....+.. ..| ....+|+.||++++++.+.++.+++ +|||||-+|....+...
T Consensus 90 i~~~~~----~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 90 IAQKSP----LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGVDCFKTDFGERIPTD 164 (308)
T ss_pred CCCCch----hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCCcEEecCCCCCCCcc
Confidence 655431 111 122234433222211 112 2356899999999999999999888 89999999987654221
Q ss_pred ccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCC--EEEEEe
Q 003390 472 HHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPE--AVSIGE 518 (823)
Q Consensus 472 ~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~--~~~igE 518 (823)
.. ...+. ..-...|.-++.+-+.+.+.+++..++ .+++.-
T Consensus 165 ~~----~~~g~---~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~R 206 (308)
T cd06593 165 VV----YYDGS---DGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWAR 206 (308)
T ss_pred cc----ccCCC---CcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEc
Confidence 00 00000 000112333445566666666666554 555543
No 71
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.11 E-value=0.0027 Score=69.63 Aligned_cols=128 Identities=22% Similarity=0.406 Sum_probs=83.4
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-..+. +.++.++++|+ +.|+|=-=+. ..+| + |..+ .+|- +.++||+++|++|+++++=+-+ +
T Consensus 28 s~~~v~-~~~~~~~~~~iP~d~i~iD~~w~----~~~g----~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~ 93 (303)
T cd06592 28 NQETVL-NYAQEIIDNGFPNGQIEIDDNWE----TCYG----D-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-F 93 (303)
T ss_pred CHHHHH-HHHHHHHHcCCCCCeEEeCCCcc----ccCC----c-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-e
Confidence 445666 58888999995 6777642221 1122 2 3333 3664 3789999999999999998887 4
Q ss_pred cCCCccccccCCC-CCCCCccccCCCC----CcccC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 398 ASNNVLDGLNMFD-GTDGHYFHSGSRG----YHWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 398 ~~~~~~~~~~~fd-g~~~~yf~~~~~g----~~~~w--~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
++.++. .|. +....||-....| ....| ....+|+.||++++.+.+.++..+.++|||||-+|...
T Consensus 94 i~~~s~----~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 94 INTDSE----NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred eCCCCH----HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 444321 121 2223344433322 01112 23568999999999999999999977999999999754
No 72
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.00059 Score=80.53 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=69.1
Q ss_pred CCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCC------CHHHHHHHHHHHHH-cCCEEEEE
Q 003390 320 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG------TPDDLKSLIDKAHE-LGLLVLMD 392 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~G------t~edlk~LV~~aH~-~GI~VIlD 392 (823)
|-+.+-. .+|.-+|+.|||.|+++|++|-.. ++.-|...|-..+++.|. +.+|.++||+.||+ -||--|-|
T Consensus 139 Gpl~eWe-prL~va~e~gYNmIHfTPlqelG~-S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 139 GPLDEWE-PRLRVAKESGYNMIHFTPLQELGL-SRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred CChhhhh-HHHHHHHHcCCceEeeeeHHHhcc-CCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 5555554 689999999999999999999655 345688888888888777 78999999999996 69999999
Q ss_pred ecccccCCCc
Q 003390 393 IVHSHASNNV 402 (823)
Q Consensus 393 vV~NH~~~~~ 402 (823)
||+||++.++
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999986
No 73
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=96.85 E-value=0.028 Score=65.84 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccc--ccCCCccccc----------cC-CCCCCCCccccCCCCCcccCCCCCCCCCCHH
Q 003390 373 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGL----------NM-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE 439 (823)
Q Consensus 373 edlk~LV~~aH~~GI~VIlDvV~N--H~~~~~~~~~----------~~-fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~ 439 (823)
++++++-+.|+++||++|-|+.+- +-|.+..... .. -+|.+|.||... | ..|+.+.+|+..-.
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsaDvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~--G--Q~WG~P~y~w~~l~ 287 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFVAYDSADVWADPELFCLRASAGAPKPAGLGPDYFLEQ--G--QNWGLPPYDWNVLK 287 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcceeCCCcHHHHhCHHHhCCCcccCCCCCCCCCCCccccc--C--CCCCCCCcCHHHHH
Confidence 455667777889999999999863 3333321000 11 334446677643 2 35788888764211
Q ss_pred --HHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 003390 440 --VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 517 (823)
Q Consensus 440 --V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~ig 517 (823)
--+..++-++.=++ .+|++|+|.+..+... .-++.+. -....|.....+..+++..+....... +.+||
T Consensus 288 ~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~-w~IP~g~---~ta~~G~wv~~Pg~~l~~~l~~e~~~~---~~vIa 358 (513)
T TIGR00217 288 ARGYEWWIKRLGANMQ--YADILRIDHFRGFVSL-WWVPAGE---STAFNGAWVHYPGDDFFNILANESKDN---LKIIG 358 (513)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEecchhhhcee-eeecCCC---CCCCCCeeEeCCHHHHHHHHHHHcCCC---CcEEe
Confidence 11234444555555 7999999987544211 1112111 011123333345556666665554321 78999
Q ss_pred ecCCCCC
Q 003390 518 EDVSGMP 524 (823)
Q Consensus 518 E~~~~~~ 524 (823)
|+.+--|
T Consensus 359 EDLG~v~ 365 (513)
T TIGR00217 359 EDLGTVP 365 (513)
T ss_pred eeCCCCC
Confidence 9986544
No 74
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=96.75 E-value=0.022 Score=66.43 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=31.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------hcCceEEEEcccccc
Q 003390 431 RLFNYGSWEVLRFLLSNARWWLE---------EYKFDGFRFDGVTSM 468 (823)
Q Consensus 431 ~~ln~~~~~V~~~l~~~l~~Wl~---------e~gvDGfR~D~v~~m 468 (823)
.++|-+||.|+.+-+.++-|.+. +..|||||+|||..+
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNV 190 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNV 190 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeeccccc
Confidence 57899999999999999999987 678999999999765
No 75
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.72 E-value=0.0034 Score=69.93 Aligned_cols=140 Identities=23% Similarity=0.306 Sum_probs=81.7
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCC--------------CCCCCCccccccCcCCCCCCHHHHHHHHHHHHH
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSY--------------YASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHE 384 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~--------------~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~ 384 (823)
+-.++. +.++.+++.|| ++|+|=+-+.... ..+|-|+... |....+|- +.++||+++|+
T Consensus 22 ~~~ev~-~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~-f~~~~~FP---dp~~mi~~Lh~ 96 (340)
T cd06597 22 TQAEVM-RQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFS-FPVEGRWP---NPKGMIDELHE 96 (340)
T ss_pred CHHHHH-HHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccc-cCccccCC---CHHHHHHHHHH
Confidence 345565 58888888887 7787753110000 0011122222 11122443 57899999999
Q ss_pred cCCEEEEEecccccCCC-cccc--ccCC-CCCCCCccccCCCCCc----ccC--CCCCCCCCCHHHHHHHHHHHHHHHHh
Q 003390 385 LGLLVLMDIVHSHASNN-VLDG--LNMF-DGTDGHYFHSGSRGYH----WMW--DSRLFNYGSWEVLRFLLSNARWWLEE 454 (823)
Q Consensus 385 ~GI~VIlDvV~NH~~~~-~~~~--~~~f-dg~~~~yf~~~~~g~~----~~w--~~~~ln~~~~~V~~~l~~~l~~Wl~e 454 (823)
+|++|++=+.+ ++..+ +... ...| .+....||-....|.. ..| ++..+|+.||++++...+.++.++++
T Consensus 97 ~G~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~ 175 (340)
T cd06597 97 QGVKVLLWQIP-IIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDE 175 (340)
T ss_pred CCCEEEEEecC-ccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHh
Confidence 99999985544 33211 1000 0001 1222334443333321 123 34679999999999999999999988
Q ss_pred cCceEEEEcccc
Q 003390 455 YKFDGFRFDGVT 466 (823)
Q Consensus 455 ~gvDGfR~D~v~ 466 (823)
+|||||-+|+..
T Consensus 176 ~Gidg~w~D~~E 187 (340)
T cd06597 176 LGIDGFKTDGGE 187 (340)
T ss_pred cCCcEEEecCCC
Confidence 999999999764
No 76
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=96.63 E-value=0.033 Score=59.65 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=80.8
Q ss_pred hHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCC--CC--CHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 003390 325 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSR--CG--TPDDLKSLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 325 ~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~--~G--t~edlk~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
.+++.++.|+++|+|+|-|.--.+... ..++. +. ..+.|+++|+.|+++||+||||+--.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~------------~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~---- 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQ------------EPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA---- 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTS------------TTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES----
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhc------------CCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC----
Confidence 456799999999999999865432111 11222 22 26889999999999999999997543
Q ss_pred CccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhc----CceEEEEcccccccccccCcc
Q 003390 401 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY----KFDGFRFDGVTSMMYTHHGLQ 476 (823)
Q Consensus 401 ~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~----gvDGfR~D~v~~m~~~~~g~~ 476 (823)
+.|.. ........+...+++.+.++++...| .|-|| +.+.-.. ...
T Consensus 86 -------------~~w~~-----------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~--el~NEP~----~~~ 135 (281)
T PF00150_consen 86 -------------PGWAN-----------GGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW--ELWNEPN----GGN 135 (281)
T ss_dssp -------------TTCSS-----------STSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE--ESSSSGC----STT
T ss_pred -------------ccccc-----------cccccccchhhHHHHHhhhhhhccccCCCCcEEEE--EecCCcc----ccC
Confidence 01100 01112223345566666677777766 34443 2221110 000
Q ss_pred ccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEec
Q 003390 477 VAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 519 (823)
Q Consensus 477 ~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~ 519 (823)
. ...| .......-..+.+.+.+.|++..|+.+++.+.
T Consensus 136 ~--~~~w----~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 136 D--DANW----NAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp S--TTTT----SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred C--cccc----ccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 0 0000 00001122468899999999999988777766
No 77
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.51 E-value=0.025 Score=61.95 Aligned_cols=166 Identities=25% Similarity=0.246 Sum_probs=94.2
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCC-CCCCCCCccccccC--cCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCc
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFA--PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNV 402 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~~~a--~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~ 402 (823)
.++.|+.|++-|+|+|-| +-. .++.-.|....--+ +...-....|+++|+++||++||.+|-=+|. -++.
T Consensus 15 ~~~~~~~i~~t~lNavVI----DvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~---FkD~ 87 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVI----DVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVV---FKDP 87 (316)
T ss_pred HHHHHHHHHhcCCceEEE----EEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEE---ecCh
Confidence 347899999999999954 221 11222232221111 1111112578999999999999999999984 1221
Q ss_pred cccccCCCCCCCCccccCCCCCcccC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCcccccc
Q 003390 403 LDGLNMFDGTDGHYFHSGSRGYHWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 480 (823)
Q Consensus 403 ~~~~~~fdg~~~~yf~~~~~g~~~~w--~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 480 (823)
. +.. ..+.|-.....|..|.- +..-+|--+++|++|+++.++-.++ .|||.+-||-+..=. .+.....
T Consensus 88 ~--la~---~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~-~GFdEIqfDYIRFP~---~~~~~~l- 157 (316)
T PF13200_consen 88 V--LAE---AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK-LGFDEIQFDYIRFPD---EGRLSGL- 157 (316)
T ss_pred H--Hhh---hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHH-cCCCEEEeeeeecCC---CCccccc-
Confidence 0 000 01222112222222211 1234777899999999999999998 899999999874321 0000000
Q ss_pred CCcccccCcccChhHH-HHHHHHHHhhhcc
Q 003390 481 GNYSEYFGFATDVDAV-VYLMLVNDMIHGL 509 (823)
Q Consensus 481 ~~~~~~~g~~~d~~~~-~fl~~~~~~v~~~ 509 (823)
.|........-.+++ +|++.+++.++..
T Consensus 158 -~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~ 186 (316)
T PF13200_consen 158 -DYSENDTEESRVDAITDFLAYAREELHPY 186 (316)
T ss_pred -ccCCCCCcchHHHHHHHHHHHHHHHHhHc
Confidence 111110111123454 8999999999776
No 78
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.45 E-value=0.027 Score=66.16 Aligned_cols=126 Identities=20% Similarity=0.308 Sum_probs=69.8
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcC------------CCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLLVLMDIVH 395 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~------------~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 395 (823)
+.|+.|++.-||.||+= .|-|.-...+..+ .|-=..+-+|.+|++||+.||++|.=.-+
T Consensus 122 ~~i~~L~~yHIN~~QFY---------DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmi 192 (559)
T PF13199_consen 122 AEIDQLNRYHINGLQFY---------DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMI 192 (559)
T ss_dssp HHHHHHHHTT--EEEET---------S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHhhCcCeEEEE---------eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhh
Confidence 78999999999999962 2333322222222 22223789999999999999999875443
Q ss_pred cccCCCccccccCCCCCCCCccc--cCCCC------CcccCCC--CCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 396 SHASNNVLDGLNMFDGTDGHYFH--SGSRG------YHWMWDS--RLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 396 NH~~~~~~~~~~~fdg~~~~yf~--~~~~g------~~~~w~~--~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
.-+..+. .-+|..+.|+. ..... ....|.+ -.+|-.|++-|++|+..+...++.+|||||.+|.+
T Consensus 193 yaa~~~~-----~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~ 267 (559)
T PF13199_consen 193 YAANNNY-----EEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQL 267 (559)
T ss_dssp SEEETT-------S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S
T ss_pred hccccCc-----ccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeecc
Confidence 3332221 01233333221 11110 0112433 46889999999999999999999999999999998
Q ss_pred cc
Q 003390 466 TS 467 (823)
Q Consensus 466 ~~ 467 (823)
..
T Consensus 268 G~ 269 (559)
T PF13199_consen 268 GN 269 (559)
T ss_dssp --
T ss_pred CC
Confidence 63
No 79
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=96.42 E-value=0.027 Score=68.06 Aligned_cols=140 Identities=13% Similarity=0.148 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCC--EEEEEeccc--ccCCCccccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHH--H
Q 003390 373 DDLKSLIDKAHELGL--LVLMDIVHS--HASNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--L 441 (823)
Q Consensus 373 edlk~LV~~aH~~GI--~VIlDvV~N--H~~~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V--~ 441 (823)
++++++-+.|+++|| ++|-|+.+. +-|.+..... ..--|.+|.+|... | ..|+.+.+|+..-.- -
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~~GaPPD~fs~~--G--Q~WG~P~y~w~~l~~~gy 430 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKASVGAPPDILGPL--G--QNWGLPPMDPHVLQARAY 430 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCcCCCCCCcCCcc--c--ccCCCcCcCHHHHHhcCc
Confidence 678888999999999 679999863 3333321111 11236677777643 3 357777776532111 1
Q ss_pred HHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 003390 442 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 521 (823)
Q Consensus 442 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~ 521 (823)
+..++-++.-++ ++|++|+|-+..+... .-++.+- ....|.....+..+++..+ ++.+..+++.+|||+.+
T Consensus 431 ~ww~~rlr~~~~--~~g~lRIDH~~Gl~rl-W~IP~g~----~a~~G~yv~~P~~~ll~~l--ales~~~~~~vIgEDLG 501 (695)
T PRK11052 431 QPFIDLLRANMQ--HCGALRIDHVMSLLRL-WWIPYGE----TADQGAYVHYPVDDLLAIL--ALESQRHRCMVIGEDLG 501 (695)
T ss_pred HHHHHHHHHHHH--hCCEEEecchhhhhee-eecCCCC----CCCCCeeEeCCHHHHHHHH--HHHHhcCCCCEEEeeCC
Confidence 234445555555 7999999987654211 1112111 1112222222333444333 12444567899999986
Q ss_pred CCCC
Q 003390 522 GMPT 525 (823)
Q Consensus 522 ~~~~ 525 (823)
.-|.
T Consensus 502 ~Vp~ 505 (695)
T PRK11052 502 TVPV 505 (695)
T ss_pred CCCH
Confidence 5443
No 80
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.30 E-value=0.017 Score=63.82 Aligned_cols=130 Identities=14% Similarity=0.238 Sum_probs=78.1
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-..+. +.++.+++.|| ++|+|= ..+....|+ .-|..++ +|-. .++||+++|++|++||+-+. -+
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD----~~~~~~~~~---~~f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~ 89 (319)
T cd06591 22 TQEELL-DVAKEYRKRGIPLDVIVQD----WFYWPKQGW---GEWKFDPERFPD---PKAMVRELHEMNAELMISIW-PT 89 (319)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEe----chhhcCCCc---eeEEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CC
Confidence 444555 57788887755 677663 111111121 1244443 6654 57899999999999999543 44
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCC--cccCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 398 ASNNVLDGLNMF-DGTDGHYFHSGSRGY--HWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 398 ~~~~~~~~~~~f-dg~~~~yf~~~~~g~--~~~w~--~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
+..+.. .| ++....||.....+. ...|. ...+|+.||++++...+.++..+.++|||||-+|.-.
T Consensus 90 v~~~~~----~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 90 FGPETE----NYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred cCCCCh----hHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 544321 11 112223443332221 12232 3679999999999988877665556999999999864
No 81
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.20 E-value=0.025 Score=63.06 Aligned_cols=133 Identities=13% Similarity=0.145 Sum_probs=79.5
Q ss_pred HHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 322 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
-.++. +.+..+++.|| +.|||=.=+. ..+.+ |..++ +|-.+. .++||+++|++|++|++=+.+ |+
T Consensus 23 ~~~v~-~~~~~~r~~~iP~d~i~lD~~~~-~~~~~--------f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P-~v 90 (339)
T cd06602 23 VDEVK-EVVENMRAAGIPLDVQWNDIDYM-DRRRD--------FTLDPVRFPGLK-MPEFVDELHANGQHYVPILDP-AI 90 (339)
T ss_pred HHHHH-HHHHHHHHhCCCcceEEECcccc-cCccc--------eecccccCCCcc-HHHHHHHHHHCCCEEEEEEeC-cc
Confidence 34555 57888888876 6777632111 11111 22222 444332 189999999999999997543 44
Q ss_pred CCCc-cccccCC-CCCCCCccccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 399 SNNV-LDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 399 ~~~~-~~~~~~f-dg~~~~yf~~~~~g~-----~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
..+. ......| ++....||-....|. .|......+|+.||++++...+.++.+++++|||||-+|...
T Consensus 91 ~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 91 SANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred ccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 3321 0011111 122233444333321 122223558999999999999999999988999999999753
No 82
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.11 E-value=0.0083 Score=66.23 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=80.1
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-.++. +.+..+++.+| +.|||=.=+- . +|. .|..++ +|- +.++||+.+|++|++|++=+. -+
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~-~-----~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~-P~ 87 (317)
T cd06600 22 PQDKVV-EVVDIMQKEGFPYDVVFLDIHYM-D-----SYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVD-PG 87 (317)
T ss_pred CHHHHH-HHHHHHHHcCCCcceEEEChhhh-C-----CCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEee-cc
Confidence 445565 57888888886 6777642111 1 121 123333 554 457999999999999999554 34
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 398 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 398 ~~~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
+..+.. . ..| .+....||.....+. ...| ....+|+.||++++...+.++..+.+.|||||-+|.-
T Consensus 88 i~~~~~-~-~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~ 159 (317)
T cd06600 88 IRVDQN-Y-SPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMN 159 (317)
T ss_pred ccCCCC-C-hHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCC
Confidence 443320 0 111 222334554333221 1123 2346899999999999999999887799999999975
No 83
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=95.98 E-value=0.069 Score=64.18 Aligned_cols=132 Identities=13% Similarity=0.021 Sum_probs=80.6
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCC--CCccccccCc-CCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASF--GYHVTNFFAP-SSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~--GY~~~~~~a~-~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-+.+. ..|+.||++|+|+|+|-.+.+....+.+ -|-|..+... ++-| +-+.-.+ +|++|++|..=+-+--
T Consensus 332 q~~~L~-~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f---~~~aw~l--~~r~~v~v~AWmp~~~ 405 (671)
T PRK14582 332 QDRNID-VLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLF---NRVAWQL--RTRAGVNVYAWMPVLS 405 (671)
T ss_pred HHHHHH-HHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCc---CHHHHHH--HHhhCCEEEEecccee
Confidence 345665 6999999999999999887664432221 2333332222 1111 1222223 9999999987765543
Q ss_pred cCCCcc-ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 398 ASNNVL-DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 398 ~~~~~~-~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
++-+.. .-...++ ....+...++.|..+ ||-.+|+||+.|.++..-.+..+.|||+-||-=
T Consensus 406 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~r-l~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 406 FDLDPTLPRVKRLD------TGEGKAQIHPEQYRR-LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred eccCCCcchhhhcc------ccCCccccCCCCCcC-CCCCCHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 332110 0000010 001111234556445 999999999999999999999889999999753
No 84
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.87 E-value=0.014 Score=64.41 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=77.5
Q ss_pred hhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 003390 324 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 324 ~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
.+. +.++.+++.|| ++|+|-+=+... .|-. ..-|..+ .+|- +.++||+++|++|++|++-+.+ +++.
T Consensus 30 ~v~-~~~~~~r~~~iP~d~i~ld~~~~~~----~~~~-~~~f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~ 99 (317)
T cd06599 30 ALL-EFIDKCREHDIPCDSFHLSSGYTSI----EGGK-RYVFNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQ 99 (317)
T ss_pred HHH-HHHHHHHHcCCCeeEEEEecccccc----CCCc-eeeeecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccC
Confidence 444 57888888887 778764311100 0100 0113333 3664 4679999999999999995544 4443
Q ss_pred CccccccCCC-CCCCCccccCCC------CCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 401 NVLDGLNMFD-GTDGHYFHSGSR------GYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 401 ~~~~~~~~fd-g~~~~yf~~~~~------g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
+++ .|+ +....||-.... +..|......+|+.||++++...+.++.-+.+.|||||-+|..
T Consensus 100 ~~~----~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 100 DHP----RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred CCH----HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 321 111 122234432221 1122223356999999999999999966666699999999965
No 85
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=95.72 E-value=0.082 Score=61.29 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCCEEEEEecccccC--CCccccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHH
Q 003390 373 DDLKSLIDKAHELGLLVLMDIVHSHAS--NNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLL 445 (823)
Q Consensus 373 edlk~LV~~aH~~GI~VIlDvV~NH~~--~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~ 445 (823)
+++.++=.-|+++||.+|.|+.+.=.. .+..... +.--|.+|.+|... | ..|+.+..|+.. ...
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~~~~f~~~~~~GaPPD~f~~~--G--Q~Wg~p~yn~~~-----l~~ 280 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQDSADVWANPEYFCLDESAGAPPDVFNAQ--G--QDWGLPPYNPEA-----LKK 280 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCCchhhhcCcccccccccCCCCCCccccc--c--cccCCCCCCHHH-----HHH
Confidence 556666677788999999999865332 2221100 11125555565432 2 357777655432 222
Q ss_pred HHHHHHHH-----hcCceEEEEcccccc
Q 003390 446 SNARWWLE-----EYKFDGFRFDGVTSM 468 (823)
Q Consensus 446 ~~l~~Wl~-----e~gvDGfR~D~v~~m 468 (823)
+...+|++ --.+|++|+|-+..+
T Consensus 281 ~~y~wwierlr~~~~~~~~lRIDHf~Gl 308 (520)
T COG1640 281 DGYDWWIERLRANLKLYGILRIDHFRGL 308 (520)
T ss_pred cccHHHHHHHHHHHHhcCeeeeeeecch
Confidence 23344443 126899999988654
No 86
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.49 E-value=0.045 Score=61.01 Aligned_cols=129 Identities=20% Similarity=0.295 Sum_probs=80.0
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-..+. +.++.+++.|| ++|||=.-+.. +|. + |..++ +|-. .++||+++|++|++|++=+.+ |
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~~~~------~~~--~-f~~d~~~fPd---p~~m~~~l~~~g~~~~~~~~P-~ 87 (339)
T cd06604 22 PEEEVR-EIADEFRERDIPCDAIYLDIDYMD------GYR--V-FTWDKERFPD---PKELIKELHEQGFKVVTIIDP-G 87 (339)
T ss_pred CHHHHH-HHHHHHHHhCCCcceEEECchhhC------CCC--c-eeeccccCCC---HHHHHHHHHHCCCEEEEEEeC-c
Confidence 444555 68888998887 77887533321 121 1 33343 6643 579999999999999987544 3
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 398 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 398 ~~~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
+..+. ....| ++....||-....|. ...| ....+|+.||++++...+.++..++ .|||||-+|...
T Consensus 88 v~~~~--~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 159 (339)
T cd06604 88 VKVDP--GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVDGIWNDMNE 159 (339)
T ss_pred eeCCC--CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCceEeecCCC
Confidence 33221 00111 122223443333221 1122 2345899999999999999998876 999999999764
No 87
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=95.43 E-value=0.17 Score=66.36 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcC--CEEEEEeccc--ccCCCccccc-----cCCCCCCCCccccCCCCCcccCCCCCCCCCCHH--HH
Q 003390 373 DDLKSLIDKAHELG--LLVLMDIVHS--HASNNVLDGL-----NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE--VL 441 (823)
Q Consensus 373 edlk~LV~~aH~~G--I~VIlDvV~N--H~~~~~~~~~-----~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~--V~ 441 (823)
++++++-+.|+++| |++|-|+.+. +-|.+..... ..--|.+|.+|... | ..|+.+.+|+..-+ =-
T Consensus 386 ~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~aGAPPD~Fs~~--G--Q~WG~P~y~p~~L~~~gY 461 (1693)
T PRK14507 386 LQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGASIGAPPDELNPK--G--QDWGLPPFDPLELERDGY 461 (1693)
T ss_pred HHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCccCCCCCcCccc--c--ccCCCcCcCHHHHHhcCh
Confidence 67788888999999 7889999863 3233321111 12236677777543 3 35777777764211 11
Q ss_pred HHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEecCC
Q 003390 442 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGEDVS 521 (823)
Q Consensus 442 ~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~~~ 521 (823)
+..++-++.-++ ++|++|+|-+..+... .-++.+- ....|.....+..+++..+. +.+..+++.+|||+.+
T Consensus 462 ~ww~~rlr~~m~--~~g~lRIDH~lGl~Rl-W~IP~g~----ta~~G~yv~yP~~~ll~~la--LEs~r~~~~VIgEDLG 532 (1693)
T PRK14507 462 APFRALLRANMR--HAGALRIDHVMQLMRL-FWIPLGR----SAREGAYVAYPFEPMLAVLA--LESHRNRCLVIGEDLG 532 (1693)
T ss_pred HHHHHHHHHHHH--HCCEEEeccHHhhhHh-cccCCCC----CCCCCeEEECCHHHHHHHHH--HHHhcCCCeEEEecCC
Confidence 234455555555 6899999987554211 1111111 11122223334444544332 1234467899999986
Q ss_pred CCC
Q 003390 522 GMP 524 (823)
Q Consensus 522 ~~~ 524 (823)
--|
T Consensus 533 tVp 535 (1693)
T PRK14507 533 TVP 535 (1693)
T ss_pred CCC
Confidence 544
No 88
>PRK10426 alpha-glucosidase; Provisional
Probab=95.40 E-value=0.18 Score=60.91 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=83.6
Q ss_pred HhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccc-cccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 323 ANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVT-NFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 323 ~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~-~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
..+. +.++.+++.|| ++|||- -+....+.++|...- | |..| .+|- +.++||+++|++|++|++=+-+ |+
T Consensus 221 ~~v~-~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P-~v 293 (635)
T PRK10426 221 EVVQ-KKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP---QLDSRIKQLNEEGIQFLGYINP-YL 293 (635)
T ss_pred HHHH-HHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEEcC-cc
Confidence 3455 68888999885 889985 222111123443221 2 2222 3443 4678999999999999998665 33
Q ss_pred CCCccccccCC-CCCCCCccccCCCCC-----cccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccc
Q 003390 399 SNNVLDGLNMF-DGTDGHYFHSGSRGY-----HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 468 (823)
Q Consensus 399 ~~~~~~~~~~f-dg~~~~yf~~~~~g~-----~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 468 (823)
..+.. .| ++....||..+..|. .|.+....+|+.||++++...+.++..+.+.|||||-.|.-..+
T Consensus 294 ~~~~~----~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~ 365 (635)
T PRK10426 294 ASDGD----LCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYL 365 (635)
T ss_pred CCCCH----HHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCC
Confidence 32220 11 122234554333321 12334467999999999999998876666699999999976543
No 89
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=95.36 E-value=0.024 Score=56.07 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCc-----EEEEeec----CCCcEEEEEc--------------CcEEEEEECCC
Q 003390 694 RGMQEFDRAMQHLEEKYGFMTSEH-----QYVSRKD----EGDRVIVFER--------------GNLVFVFNFHW 745 (823)
Q Consensus 694 ~~l~~f~r~Li~LRk~~~~l~~g~-----~~i~~~~----~~~~Vlaf~R--------------~~llvv~Nf~~ 745 (823)
....+++++|++||+.+|+++-+. +.+.+.+ ...+||++.- +.++||||-+|
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 466899999999999999876431 1222333 2366888775 24999999996
No 90
>smart00632 Aamy_C Aamy_C domain.
Probab=95.33 E-value=0.081 Score=46.11 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=42.2
Q ss_pred CCCcEEEEEc-CcEEEEEECCCCCcccceEE--cccCCceEEEEEeCCCCCcCCccccCCCccccccccccCCCCeEEEE
Q 003390 725 EGDRVIVFER-GNLVFVFNFHWNSSYSDYRV--GCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLV 801 (823)
Q Consensus 725 ~~~~Vlaf~R-~~llvv~Nf~~~~~~~~~~l--~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l 801 (823)
.++++|+|.| +..+|++|.+.. .....+ .+ ++|.|++++.. ...|. .+.. ...+.+.+
T Consensus 6 ~~~~~laF~Rg~~g~VaiN~~~~--~~~~~~~t~l-p~G~Y~d~l~g---~~~g~-------~v~V------~~~G~~~~ 66 (81)
T smart00632 6 NGDNQIAFERGSKGFVAINRSDS--DLTITLQTSL-PAGTYCDVISG---LCTGK-------SVTV------GSNGIATF 66 (81)
T ss_pred CCCeEEEEECCCeEEEEEECCCC--ceEEEEeecC-CCcceEEEecC---cccCC-------EEEE------CCCCEEEE
Confidence 3455999999 578889998843 333333 43 46999999863 00111 0111 11235889
Q ss_pred EEcCce-EEEEE
Q 003390 802 YAPSRT-AVVYA 812 (823)
Q Consensus 802 ~lp~~s-~~V~~ 812 (823)
+|||++ ++|+.
T Consensus 67 ~l~~~~~v~i~~ 78 (81)
T smart00632 67 TLPAGGAVAIHV 78 (81)
T ss_pred EECCCCeEEEEE
Confidence 999999 55554
No 91
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=95.23 E-value=0.083 Score=57.90 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccccccccccc-CccccccCCcccccCcccChhHHHHHH
Q 003390 423 GYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH-GLQVAFTGNYSEYFGFATDVDAVVYLM 500 (823)
Q Consensus 423 g~~~~w-~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~-g~~~~f~~~~~~~~g~~~d~~~~~fl~ 500 (823)
+....| ++..+|+.+++.+++|++-+...++ .|+|||=+|.+....+... |. .+ .....+-+.|++
T Consensus 127 ~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDsy~~~~~~~~--~~---------~~~~~~m~~~i~ 194 (315)
T TIGR01370 127 NEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDAFEYWAENGD--NR---------PGAAAEMIAFVC 194 (315)
T ss_pred CCCCCCCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchhhhhhcccCC--cc---------hhhHHHHHHHHH
Confidence 345667 7788999999999999988877666 8999999999876532100 00 00 000123468899
Q ss_pred HHHHhhhccCCCEEEEE
Q 003390 501 LVNDMIHGLYPEAVSIG 517 (823)
Q Consensus 501 ~~~~~v~~~~p~~~~ig 517 (823)
.+.+.+|+.+|++++|.
T Consensus 195 ~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 195 EIAAYARAQNPQFVIIP 211 (315)
T ss_pred HHHHHHHHHCCCEEEEe
Confidence 99999999999999985
No 92
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=95.08 E-value=0.038 Score=63.90 Aligned_cols=130 Identities=22% Similarity=0.386 Sum_probs=76.2
Q ss_pred HHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 322 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
-..+. +.++.+++.|| ++|+|-.-+.. +|. + |..|+ +|- ++++|++.+|++|++|++-+.+ ++
T Consensus 42 ~~~v~-~~i~~~~~~~iP~d~~~iD~~~~~------~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v 107 (441)
T PF01055_consen 42 QDEVR-EVIDRYRSNGIPLDVIWIDDDYQD------GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FV 107 (441)
T ss_dssp HHHHH-HHHHHHHHTT--EEEEEE-GGGSB------TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EE
T ss_pred HHHHH-HHHHHHHHcCCCccceeccccccc------ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-cc
Confidence 34555 68888888887 45554332221 111 2 23333 443 7889999999999999999887 44
Q ss_pred CCCccccccCCC-CCCCCccccCCCC---CcccCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 399 SNNVLDGLNMFD-GTDGHYFHSGSRG---YHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 399 ~~~~~~~~~~fd-g~~~~yf~~~~~g---~~~~w~--~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
..... ....|+ +....|+.....+ ....|. ...+|+.||++++...+.++..++.+|||||-+|...
T Consensus 108 ~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 108 SNDSP-DYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp ETTTT-B-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTT
T ss_pred CCCCC-cchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCC
Confidence 43321 000010 0112233333322 111243 4679999999999999999999998899999999854
No 93
>PRK10658 putative alpha-glucosidase; Provisional
Probab=94.17 E-value=0.07 Score=64.57 Aligned_cols=126 Identities=11% Similarity=0.238 Sum_probs=80.0
Q ss_pred hhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccccCC
Q 003390 324 NFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 324 ~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
.+. +.++.+++.|| ++|+|=..+-. +|+-.+ |..| .+|-. .+.||+++|++|++|++=+.+ ++..
T Consensus 284 ~v~-~~~~~~r~~~iP~d~i~lD~~w~~------~~~~~~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~i~P-~i~~ 351 (665)
T PRK10658 284 TVN-SFIDGMAERDLPLHVFHFDCFWMK------EFQWCD-FEWDPRTFPD---PEGMLKRLKAKGLKICVWINP-YIAQ 351 (665)
T ss_pred HHH-HHHHHHHHcCCCceEEEEchhhhc------CCceee-eEEChhhCCC---HHHHHHHHHHCCCEEEEeccC-CcCC
Confidence 344 46777787776 55665432211 121123 2333 34543 468999999999999997655 3433
Q ss_pred CccccccCC-CCCCCCccccCCCCCccc---C--CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 401 NVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 401 ~~~~~~~~f-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
++. .| ++....||-...+|..+. | +...+|+.||++|+...+.++.+++ .|||||-.|...
T Consensus 352 ~s~----~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvdgfw~D~gE 418 (665)
T PRK10658 352 KSP----LFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVDCFKTDFGE 418 (665)
T ss_pred Cch----HHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCcEEEecCCc
Confidence 321 12 133345665555554332 2 3467999999999999999999888 899999999653
No 94
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=93.93 E-value=0.11 Score=57.28 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=77.6
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-..+. +.++.+++.|| ++|+|=.=+-........|. + |..+ .+|-.+ ++||+.+|++|++|++=+.+ +
T Consensus 22 ~~~~v~-~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPdp---~~mi~~L~~~G~k~~~~v~P-~ 93 (317)
T cd06598 22 NWQEVD-DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPDP---AGMIADLAKKGVKTIVITEP-F 93 (317)
T ss_pred CHHHHH-HHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCCH---HHHHHHHHHcCCcEEEEEcC-c
Confidence 334555 57888888886 67766431100000000011 2 3333 366544 78999999999999998753 3
Q ss_pred cCCCccccccCC-CCCCCCc-cccCCCC-----CcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 398 ASNNVLDGLNMF-DGTDGHY-FHSGSRG-----YHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 398 ~~~~~~~~~~~f-dg~~~~y-f~~~~~g-----~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
+..+++ .| ++....| +.....+ ..|......+|+.||++++...+.++..++ .|||||-+|.-
T Consensus 94 v~~~~~----~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gvdg~w~D~~ 163 (317)
T cd06598 94 VLKNSK----NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID-QGVTGWWGDLG 163 (317)
T ss_pred ccCCch----hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh-CCccEEEecCC
Confidence 333321 11 1112223 2222211 122234567899999999999999988755 99999999964
No 95
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.85 E-value=0.41 Score=52.95 Aligned_cols=147 Identities=17% Similarity=0.142 Sum_probs=79.5
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 406 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~ 406 (823)
.+.+..||+.|+|+|-|=- +-.|.. .-+-+.+...+|.++|+++||+|+||+=++.+-.+.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~--------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP---- 87 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD--------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP---- 87 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT--------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT----
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc--------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC----
Confidence 3689999999999998743 333331 455678999999999999999999999776654431
Q ss_pred cCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccc
Q 003390 407 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEY 486 (823)
Q Consensus 407 ~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~ 486 (823)
| .....-.|....++--...|.+|-.++|....+ .|+. .|.|. +.. .+..++-..
T Consensus 88 ----g---------~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~-~G~~---pd~VQ-VGN---Ein~Gmlwp---- 142 (332)
T PF07745_consen 88 ----G---------KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA-AGVT---PDMVQ-VGN---EINNGMLWP---- 142 (332)
T ss_dssp ----T---------B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH-TT-----ESEEE-ESS---SGGGESTBT----
T ss_pred ----C---------CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCC---ccEEE-eCc---cccccccCc----
Confidence 0 000112344333333345677777777777665 5654 55542 110 011111110
Q ss_pred cCcccChhH-HHHHHHHHHhhhccCCCEEEEE
Q 003390 487 FGFATDVDA-VVYLMLVNDMIHGLYPEAVSIG 517 (823)
Q Consensus 487 ~g~~~d~~~-~~fl~~~~~~v~~~~p~~~~ig 517 (823)
.|...+.+. ..+|+...++|++..|++.++-
T Consensus 143 ~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 143 DGKPSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp TTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred CCCccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 011223333 3677777899999888765544
No 96
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=93.22 E-value=0.31 Score=51.91 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 450 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~ 450 (823)
+.+++++.|..+|++|+||++=+--+|.+.. | ....+++-++.+.+++.-
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~-------~-----------------------~~~~~~~~~~~fa~~l~~ 98 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAG-------F-----------------------ANNLSDAAAKAYAKAIVD 98 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCC-------c-----------------------cccCCHHHHHHHHHHHHH
Confidence 4689999999999999999998765554321 0 011235556777778888
Q ss_pred HHHhcCceEEEEcc
Q 003390 451 WLEEYKFDGFRFDG 464 (823)
Q Consensus 451 Wl~e~gvDGfR~D~ 464 (823)
+++.||+||+=+|-
T Consensus 99 ~v~~yglDGiDiD~ 112 (255)
T cd06542 99 TVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHhCCCceEEee
Confidence 88889999999995
No 97
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=92.88 E-value=2.4 Score=47.46 Aligned_cols=179 Identities=15% Similarity=0.072 Sum_probs=98.4
Q ss_pred HHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcC-------CCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003390 322 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS-------SRCGTPDDLKSLIDKAHELGLLVLMDIV 394 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~-------~~~Gt~edlk~LV~~aH~~GI~VIlDvV 394 (823)
...|. +.|+.+..+.+|.++|==. .+.+|.+.+..|=.+. ..|=|.+|+|+||+-|.++||.||-.+-
T Consensus 17 ~~~ik-~~Id~ma~~KlN~lh~Hlt----Dd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 17 VDSIK-RTIDAMAYNKLNVLHWHIT----DSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred HHHHH-HHHHHHHHhCCcEEEEeEE----cCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEecc
Confidence 34455 6888999999999887210 0011222222211111 1122899999999999999999999884
Q ss_pred -ccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccccccccccc
Q 003390 395 -HSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHH 473 (823)
Q Consensus 395 -~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~ 473 (823)
+.|+..-.. ............+... ...-....||..+|++.+++.+.+.-.++-|... +-|-
T Consensus 92 ~PGH~~a~~~-~~p~l~~~~~~~~~~~----~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~-----------~iHi 155 (348)
T cd06562 92 TPGHTGSWGQ-GYPELLTGCYAVWRKY----CPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK-----------YFHL 155 (348)
T ss_pred CchhhHHHHH-hChhhhCCCCcccccc----ccCCCCccccCCChhHHHHHHHHHHHHHHhcCCc-----------ceEe
Confidence 788854210 0000000000000000 0001124689999999999999999999855411 1122
Q ss_pred CccccccCCccc---------ccCcccChhH--HHHHHHHHHhhhccCCCEEEEEecCCC
Q 003390 474 GLQVAFTGNYSE---------YFGFATDVDA--VVYLMLVNDMIHGLYPEAVSIGEDVSG 522 (823)
Q Consensus 474 g~~~~f~~~~~~---------~~g~~~d~~~--~~fl~~~~~~v~~~~p~~~~igE~~~~ 522 (823)
|-...+.+.|.. ..|. .+... ..|++++.+.+++.....++-.|...+
T Consensus 156 GgDE~~~~~w~~~p~~~~~m~~~g~-~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~ 214 (348)
T cd06562 156 GGDEVNFNCWNSNPEIQKFMKKNNG-TDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDN 214 (348)
T ss_pred ecCCCCCCcccCCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccC
Confidence 322222222211 0111 11222 258889999999887777777776644
No 98
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.72 E-value=0.23 Score=54.24 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=71.7
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccC----CCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEH----SYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDI 393 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~----~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDv 393 (823)
+-..+. +.+..+++.|| ++|+|=-=+-. +.+. -+|. -|..|+ +|- +.++||+++|++|++||+-+
T Consensus 23 s~~ev~-~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~-~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYL-ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYG-SGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHH-HHHHHHHHhCCCccEEEEeccccccccccccc-CCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEe
Confidence 445665 57788888776 67766211100 0000 0111 134443 664 45899999999999999988
Q ss_pred cccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 394 VHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 394 V~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
.+......... .|+. +..........-+...+|+.||+.++...+.++.-+..+|||||=.|.-
T Consensus 95 ~P~~~~~~~~~---~y~~-----~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 95 HPADGIRAHED---QYPE-----MAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred CCCcccCCCcH---HHHH-----HHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 77432111100 0100 0000000000001135799999999977777766666699999999953
No 99
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=92.38 E-value=0.62 Score=52.41 Aligned_cols=84 Identities=12% Similarity=0.046 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003390 376 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 455 (823)
Q Consensus 376 k~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~ 455 (823)
++|+..||++|++|++.. + + + .-...+++.|+.+++++.-+++++
T Consensus 67 ~~~~~~A~~~~v~v~~~~-------~-------~----~-----------------~~~l~~~~~R~~fi~siv~~~~~~ 111 (358)
T cd02875 67 DELLCYAHSKGVRLVLKG-------D-------V----P-----------------LEQISNPTYRTQWIQQKVELAKSQ 111 (358)
T ss_pred HHHHHHHHHcCCEEEEEC-------c-------c----C-----------------HHHcCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999741 0 0 0 002457889999999999999999
Q ss_pred CceEEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhccCCC
Q 003390 456 KFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPE 512 (823)
Q Consensus 456 gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~-~~fl~~~~~~v~~~~p~ 512 (823)
|+||+-+|-=.-. . ....+.+. ..|++++++.+++..++
T Consensus 112 gfDGIdIDwE~p~-------------~-----~~~~d~~~~t~llkelr~~l~~~~~~ 151 (358)
T cd02875 112 FMDGINIDIEQPI-------------T-----KGSPEYYALTELVKETTKAFKKENPG 151 (358)
T ss_pred CCCeEEEcccCCC-------------C-----CCcchHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999952100 0 00122233 47899999999886554
No 100
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=92.26 E-value=0.2 Score=61.49 Aligned_cols=87 Identities=21% Similarity=0.370 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCEEEEEecccccCCCccccccCC-CCCCCCccccCCCCCccc---C--CCCCCCCCCHHHHHHHHHH-H
Q 003390 376 KSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF-DGTDGHYFHSGSRGYHWM---W--DSRLFNYGSWEVLRFLLSN-A 448 (823)
Q Consensus 376 k~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f-dg~~~~yf~~~~~g~~~~---w--~~~~ln~~~~~V~~~l~~~-l 448 (823)
|+||+.+|++||++|.=+.+.=.... ..| ......||..+..|..+. | .+.-+||.||++|+...+. .
T Consensus 324 k~mi~~l~~~Gikl~~~i~P~i~~d~-----~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~ 398 (772)
T COG1501 324 KQMIAELHEKGIKLIVIINPYIKQDS-----PLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKK 398 (772)
T ss_pred HHHHHHHHhcCceEEEEeccccccCC-----chHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHH
Confidence 39999999999999998776433222 112 123345777666554332 2 3578999999999999964 4
Q ss_pred HHHHHhcCceEEEEcccccc
Q 003390 449 RWWLEEYKFDGFRFDGVTSM 468 (823)
Q Consensus 449 ~~Wl~e~gvDGfR~D~v~~m 468 (823)
..+++ +|||||-.|.-.-.
T Consensus 399 ~~l~d-~Gv~g~W~D~nEp~ 417 (772)
T COG1501 399 KNLLD-LGVDGFWNDMNEPE 417 (772)
T ss_pred hHHHh-cCccEEEccCCCCc
Confidence 55666 99999999986433
No 101
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=91.55 E-value=6.6 Score=47.97 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=46.8
Q ss_pred CCCCCCCCC-----HHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHH
Q 003390 429 DSRLFNYGS-----WEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVN 503 (823)
Q Consensus 429 ~~~~ln~~~-----~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~ 503 (823)
|+..|+|+| |-++++|......=.+ =+||+|+|..++. ++..-..+-
T Consensus 497 DsVKLryG~kpeDsPyLWq~M~kY~e~tAr--iFdG~RlDNcHsT--------------------------PlHVaEylL 548 (1521)
T KOG3625|consen 497 DSVKLRYGNKPEDSPYLWQHMKKYTEITAR--IFDGVRLDNCHST--------------------------PLHVAEYLL 548 (1521)
T ss_pred ceeeeccCCCcccChHHHHHHHHHHHHHHH--HhcceeeccCCCC--------------------------chhHHHHHH
Confidence 457789865 5677777665554444 5899999998653 121223345
Q ss_pred HhhhccCCCEEEEEecCCCCC
Q 003390 504 DMIHGLYPEAVSIGEDVSGMP 524 (823)
Q Consensus 504 ~~v~~~~p~~~~igE~~~~~~ 524 (823)
++.++.+|+.+++||-.++..
T Consensus 549 d~ARk~nPnlYVvAELFtgSe 569 (1521)
T KOG3625|consen 549 DAARKLNPNLYVVAELFTGSE 569 (1521)
T ss_pred HHHHhcCCCeEEEeeeccCCc
Confidence 666788999999999987643
No 102
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=91.54 E-value=2 Score=47.09 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=95.6
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCc-----------CCCCCCHHHHHHHHHHHHHcCCEE
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP-----------SSRCGTPDDLKSLIDKAHELGLLV 389 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~-----------~~~~Gt~edlk~LV~~aH~~GI~V 389 (823)
+...|. +.|+.+..+++|.++|==. ...+|.+....|=.+ ...+=|.+|+++||+-|.++||.|
T Consensus 14 ~~~~lk-~~id~ma~~K~N~lhlHl~----D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 14 SVESIK-RTIDVLARYKINTFHWHLT----DDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEeee----cCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 445555 6889999999999987311 001122222211111 112337899999999999999999
Q ss_pred EEEec-ccccCCCccccccCCCCC-CCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccccc
Q 003390 390 LMDIV-HSHASNNVLDGLNMFDGT-DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTS 467 (823)
Q Consensus 390 IlDvV-~NH~~~~~~~~~~~fdg~-~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~ 467 (823)
|-.+- +.|+..-- ..+... ..++- +..+.-....||..+|++.+++.+.+.-+++-|. +-.=|
T Consensus 89 iPEiD~PGH~~a~~----~~~p~l~~~~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~------~~~iH 153 (303)
T cd02742 89 IPEIDMPGHSTAFV----KSFPKLLTECYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELFP------DRYLH 153 (303)
T ss_pred EEeccchHHHHHHH----HhCHHhccCccc-----cCCCCCCCCccCCCCccHHHHHHHHHHHHHHhCC------CCeEE
Confidence 99885 78885421 111000 00110 0001111246899999999999999999998441 11112
Q ss_pred ccccccCccccccCCcccccCcccChh--HHHHHHHHHHhhhccCCCEEEEEecC
Q 003390 468 MMYTHHGLQVAFTGNYSEYFGFATDVD--AVVYLMLVNDMIHGLYPEAVSIGEDV 520 (823)
Q Consensus 468 m~~~~~g~~~~f~~~~~~~~g~~~d~~--~~~fl~~~~~~v~~~~p~~~~igE~~ 520 (823)
+ |-.. .+.. .+.. -..|++.+.+.+++.....++-+|..
T Consensus 154 i-----GgDE--------~~~~-~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~ 194 (303)
T cd02742 154 I-----GGDE--------AHFK-QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGF 194 (303)
T ss_pred e-----ccee--------cCCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 2 2211 1111 1111 24788999999998876666666654
No 103
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.22 E-value=2.7 Score=46.57 Aligned_cols=170 Identities=14% Similarity=0.208 Sum_probs=94.0
Q ss_pred HHhhHhhhhhhHHHcCCCEEEEC-------CcccCCCCCCCC-Ccc------cccc--CcCCCCCCHHHHHHHHHHHHHc
Q 003390 322 YANFRDDVLPRIKRLGYNAVQIM-------AVQEHSYYASFG-YHV------TNFF--APSSRCGTPDDLKSLIDKAHEL 385 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGvt~I~L~-------Pi~e~~~~~~~G-Y~~------~~~~--a~~~~~Gt~edlk~LV~~aH~~ 385 (823)
...|. +.|+.+..+++|.++|= ++-..|.-..-| |.. ..+. .....+=|.+|+|+||+-|.++
T Consensus 16 ~~~ik-~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 16 MDFLK-DIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred HHHHH-HHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 34455 68899999999999971 111111000000 000 0000 0112223899999999999999
Q ss_pred CCEEEEEec-ccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcc
Q 003390 386 GLLVLMDIV-HSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 464 (823)
Q Consensus 386 GI~VIlDvV-~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~ 464 (823)
||.||-.+- +.|+..- +..+. .+.... .........||..+|++.+++.+.+.-.++-|.. .+-
T Consensus 95 gI~vIPEID~PGH~~a~----~~~~p-----el~~~~--~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f~~----~~~ 159 (326)
T cd06564 95 GVNIIPEIDSPGHSLAF----TKAMP-----ELGLKN--PFSKYDKDTLDISNPEAVKFVKALFDEYLDGFNP----KSD 159 (326)
T ss_pred CCeEeccCCCcHHHHHH----HHhhH-----HhcCCC--cccCCCcccccCCCHHHHHHHHHHHHHHHHhcCC----CCC
Confidence 999998874 7777431 11110 000000 0001123578999999999999999999985541 001
Q ss_pred cccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhccCCCEEEEEecC
Q 003390 465 VTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAVSIGEDV 520 (823)
Q Consensus 465 v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~~p~~~~igE~~ 520 (823)
.=|| |-.. ........+ -..|++.+.+.+++.....++-.|..
T Consensus 160 ~~Hi-----GgDE--------~~~~~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~ 203 (326)
T cd06564 160 TVHI-----GADE--------YAGDAGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGI 203 (326)
T ss_pred EEEe-----cccc--------ccccCccHHHHHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 1122 2211 111111112 23789999999998866666665554
No 104
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=91.18 E-value=0.52 Score=52.36 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=70.0
Q ss_pred HHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 322 YANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
-..+. +.++.+++.+| ++|||=.=+. -+| ..|..+ .+|-.+ ++||+++|++|++|++-+.+- +
T Consensus 23 ~~ev~-~v~~~~r~~~IP~D~i~lDidy~------~~~---~~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i 88 (332)
T cd06601 23 RSDLE-EVVEGYRDNNIPLDGLHVDVDFQ------DNY---RTFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-I 88 (332)
T ss_pred HHHHH-HHHHHHHHcCCCCceEEEcCchh------cCC---CceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-e
Confidence 34454 56777777776 6777643221 122 124444 366554 689999999999999987542 2
Q ss_pred CCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 399 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 399 ~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
.. | ..+.+.+.-.|+.||++|++-.+..+.+.+ .|||||-+|.-
T Consensus 89 ~~----------g------------~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~~~W~Dmn 132 (332)
T cd06601 89 SY----------G------------GGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLEFVWQDMT 132 (332)
T ss_pred ec----------C------------ccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCceeecCCC
Confidence 10 0 011122335688999999998888888887 89999999975
No 105
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=90.97 E-value=0.36 Score=53.82 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=79.3
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-.++. +.+..+++.|| +.|+|=.=+. .+|. .|..++ +|- +.+.||+++|++|++|++-+.+-
T Consensus 22 ~~~ev~-~~~~~~~~~~iP~d~i~lD~~~~------~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~- 87 (339)
T cd06603 22 DQEDVK-EVDAGFDEHDIPYDVIWLDIEHT------DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH- 87 (339)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEChHHh------CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-
Confidence 445565 57788888776 6676642111 1222 144444 664 45889999999999999987643
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCC---cccC--CCCCCCCCCHHHHHHHHHHHHHHHH--hcCceEEEEccc
Q 003390 398 ASNNVLDGLNMF-DGTDGHYFHSGSRGY---HWMW--DSRLFNYGSWEVLRFLLSNARWWLE--EYKFDGFRFDGV 465 (823)
Q Consensus 398 ~~~~~~~~~~~f-dg~~~~yf~~~~~g~---~~~w--~~~~ln~~~~~V~~~l~~~l~~Wl~--e~gvDGfR~D~v 465 (823)
+..+. ....| ++....||.....+. ...| ....+|+.||++++...+.++..+. ..++|||-+|..
T Consensus 88 v~~~~--~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 88 IKRDD--GYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred eecCC--CCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 33221 00011 122233444333321 1123 2357999999999999999998886 468999999964
No 106
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=89.70 E-value=2.8 Score=44.67 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHH
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWW 451 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~W 451 (823)
..++..++++||++|++|++=|- ++... . |. . -..+++.|+.+++++.-+
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~--------------~-~~------------~--~~~~~~~r~~fi~~lv~~ 94 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP--------------E-FT------------A--ALNDPAKRKALVDKIINY 94 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC--------------c-ch------------h--hhcCHHHHHHHHHHHHHH
Confidence 46788999999999999998542 21100 0 00 1 235788899999999999
Q ss_pred HHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhcc
Q 003390 452 LEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGL 509 (823)
Q Consensus 452 l~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~ 509 (823)
+++|++||+-+|--.-. . ....-..|++++++.+++.
T Consensus 95 ~~~~~~DGIdiDwE~~~--------------------~-~~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 95 VVSYNLDGIDVDLEGPD--------------------V-TFGDYLVFIRALYAALKKE 131 (253)
T ss_pred HHHhCCCceeEEeeccC--------------------c-cHhHHHHHHHHHHHHHhhc
Confidence 99999999999962100 0 0012346899999998764
No 107
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=89.68 E-value=1.7 Score=52.74 Aligned_cols=131 Identities=20% Similarity=0.293 Sum_probs=79.8
Q ss_pred CCHHhhHhhhhhhHHHcCCC--EEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 320 NTYANFRDDVLPRIKRLGYN--AVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt--~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+++..+. +...+.+++|+. ++|.-=-+. -+ -.||.-=...|++ ++.+|+.+|++|+|+|+=+-++-
T Consensus 308 ~nls~~~-dvv~~~~~agiPld~~~~DiDyM------d~--ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVR-DVVENYRAAGIPLDVIVIDIDYM------DG--YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHH-HHHHHHHHcCCCcceeeeehhhh------hc--ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5677777 599999999986 554321111 11 1343333346666 99999999999999987655332
Q ss_pred cCCCccccccCCC-CCCCCccccCCCCC------cccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 398 ASNNVLDGLNMFD-GTDGHYFHSGSRGY------HWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 398 ~~~~~~~~~~~fd-g~~~~yf~~~~~g~------~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
..... ...|+ |.....+-....|. .|.-...-.|+.||.+.....+.++..-++.++|||-+|+-
T Consensus 376 s~~~~---y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmn 447 (805)
T KOG1065|consen 376 STNSS---YGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMN 447 (805)
T ss_pred ccCcc---chhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECC
Confidence 21111 01111 11111221111121 12223356889999999999988888888899999999984
No 108
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=89.51 E-value=0.91 Score=45.30 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=44.8
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
+.+..++++|+++|-|.= ..+...-+.++.++...-..+..+-+..+.++|.+.||+|++-+-++
T Consensus 24 ~~~~~m~~~GidtlIlq~----~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 24 EEFRAMKAIGIDTLILQW----TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHcCCcEEEEEE----eecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 689999999999997662 11222233344442222223567889999999999999999987654
No 109
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=89.00 E-value=0.84 Score=57.06 Aligned_cols=129 Identities=13% Similarity=0.222 Sum_probs=78.9
Q ss_pred CHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 321 TYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPSS-RCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~~-~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-..+. +.++.+++.|| ++|||=- .+. .||.+ |..|+ +|-. .++||+.+|++|+++|+=+.+ +
T Consensus 199 sq~eV~-eva~~fre~~IP~DvIwlDi----dYm--~g~~~---FTwD~~rFPd---P~~mv~~Lh~~G~kvv~iidP-g 264 (978)
T PLN02763 199 SAKRVA-EIARTFREKKIPCDVVWMDI----DYM--DGFRC---FTFDKERFPD---PKGLADDLHSIGFKAIWMLDP-G 264 (978)
T ss_pred CHHHHH-HHHHHHHHcCCCceEEEEeh----hhh--cCCCc---eeECcccCCC---HHHHHHHHHHCCCEEEEEEcC-C
Confidence 334555 57888888887 6777631 111 13332 44443 6754 479999999999999875433 3
Q ss_pred cCCCccccccCC-CCCCCCccccCCCCCc---ccCC--CCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 398 ASNNVLDGLNMF-DGTDGHYFHSGSRGYH---WMWD--SRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 398 ~~~~~~~~~~~f-dg~~~~yf~~~~~g~~---~~w~--~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
+..+. +...| .+....+|-....|.. ..|. ..-.||.||++|++..+.++.+++ .|||||-+|.-.
T Consensus 265 I~~d~--gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG~W~DmnE 336 (978)
T PLN02763 265 IKAEE--GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDGIWNDMNE 336 (978)
T ss_pred CccCC--CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcEEEccCCC
Confidence 32221 11112 1222334433333211 1232 244799999999999999998888 899999999753
No 110
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.80 E-value=0.95 Score=55.13 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=55.1
Q ss_pred hhhcccccCCcEEcCCc-EEEEEecCCcCeEEEEeecCCCCCccccccc-CCCceEEEEeCCCCCCCCCCCCCCEEEEEE
Q 003390 174 AFSRGYEKFGFIRSDTG-ITYREWAPGAKSASLIGDFNNWNPNADIMTQ-NEFGVWEIFLPNNADGSPPIPHGSRVKIHM 251 (823)
Q Consensus 174 ~f~~~y~~lG~~~~~~g-v~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r-~~~GvWei~ip~~~~g~~~~~~g~~y~~~~ 251 (823)
.+..-+.-||.|...+| +.+|+|-|.|.+|.|+.. . .....+|++ .+.|+|+..+|.. ..|++++
T Consensus 22 ~~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-~--~~~~~~~~~~~~~g~f~~~~~~~----------~~y~~~~ 88 (730)
T PRK12568 22 LPADAFAVLGPHPQADGRRQVRVLAPGAEAMGLIDG-R--GKLLARMQASPIDGVFEGILPAD----------GPYRLRI 88 (730)
T ss_pred CcCCchHhcCCcCCCCCcEEEEEECCCCcEEEEEec-C--CccccccEecCCCCeEEEecCCC----------CCEEEEE
Confidence 34566789999988888 699999999999999731 1 112237887 4679999999832 1277777
Q ss_pred eCCCCcccccCccc
Q 003390 252 DTPSGIKDSIPAWI 265 (823)
Q Consensus 252 ~~~~~~~~~~~~~~ 265 (823)
...++.....+||.
T Consensus 89 ~~~~~~~~~~dpy~ 102 (730)
T PRK12568 89 VWPDVVQEIEDPYA 102 (730)
T ss_pred EeCCceEEeecccc
Confidence 65444444456665
No 111
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=88.64 E-value=3.2 Score=46.47 Aligned_cols=149 Identities=18% Similarity=0.086 Sum_probs=81.4
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGL 406 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~ 406 (823)
++-+.-+|++|...|-|+.-+. ....-|-=..++|..++..+ ..|=+++|+++|+++||++.+ -+++. .-+
T Consensus 94 dqW~~~ak~aGakY~VlTakHH-DGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~--Y~S~~-dw~---- 164 (346)
T PF01120_consen 94 DQWAKLAKDAGAKYVVLTAKHH-DGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL--YYSPW-DWH---- 164 (346)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-T-T--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE--EEESS-SCC----
T ss_pred HHHHHHHHHcCCCEEEeehhhc-CccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE--Eecch-Hhc----
Confidence 3567889999999998876542 22233433445555555333 358899999999999999998 23222 111
Q ss_pred cCCCCCCCCccccCCCCCcccCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCccc
Q 003390 407 NMFDGTDGHYFHSGSRGYHWMWDSRLFNYG-SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSE 485 (823)
Q Consensus 407 ~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~-~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~ 485 (823)
.+.|-. ...+.. .......-. ...+.++...-++-.++.|.+|.+=||+...-
T Consensus 165 ------~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~----------------- 218 (346)
T PF01120_consen 165 ------HPDYPP-DEEGDE--NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD----------------- 218 (346)
T ss_dssp ------CTTTTS-SCHCHH--CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC-----------------
T ss_pred ------CcccCC-CccCCc--ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc-----------------
Confidence 000000 000000 000000000 01245577888889999999999999986321
Q ss_pred ccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 003390 486 YFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 517 (823)
Q Consensus 486 ~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~ig 517 (823)
..... ....+.+.+++..|++++..
T Consensus 219 ------~~~~~-~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 219 ------PDEDW-DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp ------CCTHH-HHHHHHHHHHHHSTTSEEEC
T ss_pred ------ccccc-CHHHHHHHHHHhCCeEEEec
Confidence 01112 23667788888899888765
No 112
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=87.98 E-value=1.4 Score=39.25 Aligned_cols=57 Identities=21% Similarity=0.408 Sum_probs=39.0
Q ss_pred EEEEEecC--CcCeEEEEee---cCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003390 191 ITYREWAP--GAKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 253 (823)
Q Consensus 191 v~fr~WAP--~A~~V~L~gd---fN~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~ 253 (823)
++|++=+. -.+.|.|+|+ +++|++. +.+|+..+.+.|++.+.-.. +. ...|||.+..
T Consensus 3 v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~-~~-----~~eYKy~~~~ 65 (95)
T cd05808 3 VTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPA-GT-----AIEYKYIKKD 65 (95)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCC-CC-----eEEEEEEEEC
Confidence 45665443 3478999994 7899975 57998888899988775322 11 2478887543
No 113
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=87.20 E-value=8.9 Score=42.64 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=95.0
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcC------------CCCCCHHHHHHHHHHHHHcCCE
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS------------SRCGTPDDLKSLIDKAHELGLL 388 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~------------~~~Gt~edlk~LV~~aH~~GI~ 388 (823)
+...|. +.||.+...++|.++|--.-. .+|...+..|=.+. ..|=|.+|+++||+-|.++||.
T Consensus 16 ~~~~lk-~~id~ma~~KlN~lhlHLtD~----~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~ 90 (329)
T cd06568 16 TVAEVK-RYIDLLALYKLNVLHLHLTDD----QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHIT 90 (329)
T ss_pred CHHHHH-HHHHHHHHhCCcEEEEEeecC----CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 344555 688999999999998843211 12222222221111 1223799999999999999999
Q ss_pred EEEEec-ccccCCCcc--ccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEccc
Q 003390 389 VLMDIV-HSHASNNVL--DGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 389 VIlDvV-~NH~~~~~~--~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v 465 (823)
||-.+- +.|+..--. ..+.. .+.....+. ........||..+|++.+++.+.+.-.++-|--
T Consensus 91 vIPEiD~PGH~~a~~~~~p~l~~-~~~~~~~~~------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~-------- 155 (329)
T cd06568 91 VVPEIDMPGHTNAALAAYPELNC-DGKAKPLYT------GIEVGFSSLDVDKPTTYEFVDDVFRELAALTPG-------- 155 (329)
T ss_pred EEEecCCcHHHHHHHHhChhhcc-CCCCCcccc------ccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCC--------
Confidence 999885 777753110 00110 111111110 111123568999999999999999988874321
Q ss_pred ccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccCCCEEEEEec
Q 003390 466 TSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIGED 519 (823)
Q Consensus 466 ~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~igE~ 519 (823)
. +-|-|-.. ..... ...-..|++.+.+.+++.....++-.|.
T Consensus 156 ~---~iHiGgDE--------~~~~~-~~~~~~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 156 P---YIHIGGDE--------AHSTP-HDDYAYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred C---eEEEeccc--------CCCCc-hHHHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 1 11222221 11111 1112368999999998887666655554
No 114
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=86.69 E-value=9 Score=43.55 Aligned_cols=115 Identities=21% Similarity=0.169 Sum_probs=73.0
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcccccc
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLN 407 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~ 407 (823)
+-+.-+|+.|...|-|+.-.- ....-|-=..++|.+++..+ ..|=+++|+++|+++||++-+ - |...+ +
T Consensus 85 ~Wa~~~k~AGakY~vlTaKHH-DGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~--Y--~S~~D---W-- 153 (384)
T smart00812 85 EWADLFKKAGAKYVVLTAKHH-DGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL--Y--HSLFD---W-- 153 (384)
T ss_pred HHHHHHHHcCCCeEEeeeeec-CCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE--E--cCHHH---h--
Confidence 567889999999997765442 22223443455666666655 458899999999999999998 2 22111 1
Q ss_pred CCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCceEEEEccc
Q 003390 408 MFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFL---LSNARWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 408 ~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l---~~~l~~Wl~e~gvDGfR~D~v 465 (823)
+ .+.|... ++........+...+|+ ..-++-.++.||-|.+=||..
T Consensus 154 -~---~p~y~~~--------~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 154 -F---NPLYAGP--------TSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred -C---CCccccc--------cccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 0 1122110 00011122334566777 777888888999999999975
No 115
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.65 E-value=2.5 Score=47.78 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=64.5
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCC--CHHHHHHHHHHHHHcCCEEEEEecccccCCCcc
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCG--TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL 403 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~G--t~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~ 403 (823)
.++.|.-+|++|+|+|.|-.+.-. .++|.=| .-+.|.++|+.|+++||+|||-+.. +.. +
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~--------------~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~---P 73 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWS--------------WLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAP---P 73 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHH--------------HH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS----
T ss_pred HHHHHHHHHHcCCCEEEEEEechh--------------hccCCCCeeecHHHHHHHHHHHhccCeEEEEecc-ccc---c
Confidence 347899999999999998765321 0111111 2345889999999999999998762 221 1
Q ss_pred ccccCCCCCCCCccccCCCCCcccCCC-CCCCCCCHHHHHHHHHHHHHHHHhcC----ceEEEEcc
Q 003390 404 DGLNMFDGTDGHYFHSGSRGYHWMWDS-RLFNYGSWEVLRFLLSNARWWLEEYK----FDGFRFDG 464 (823)
Q Consensus 404 ~~~~~fdg~~~~yf~~~~~g~~~~w~~-~~ln~~~~~V~~~l~~~l~~Wl~e~g----vDGfR~D~ 464 (823)
.++.. ..+.-...+..|....++. ..+++.+|.+|+++...++..++.|+ |-|+-+|.
T Consensus 74 ~Wl~~---~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 74 AWLYD---KYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp HHHHC---CSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred cchhh---hcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 22210 0011111112222222222 34677899999888877766665444 66777664
No 116
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=86.43 E-value=2.5 Score=45.39 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=61.2
Q ss_pred CCHHhhHhhhhhhHHHcCC--CEEEECCcccCCCCCCCCCccccccCcC-CCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 320 NTYANFRDDVLPRIKRLGY--NAVQIMAVQEHSYYASFGYHVTNFFAPS-SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGv--t~I~L~Pi~e~~~~~~~GY~~~~~~a~~-~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
.+-..+. +.++.+++.|| ++|+|-.=+.... ..++ +..+ .+|-. .++||+.+|++|++|++-+.+.
T Consensus 21 ~~~~~v~-~~~~~~~~~~iP~d~~~lD~~~~~~~-~~f~------~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 21 GDQDKVL-EVIDGMRENDIPLDGFVLDDDYTDGY-GDFT------FDWDAGKFPN---PKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred CCHHHHH-HHHHHHHHcCCCccEEEECcccccCC-ceee------eecChhhCCC---HHHHHHHHHHCCCEEEEEeChh
Confidence 4555666 58888888666 6787754332211 1121 2333 36654 5789999999999999976431
Q ss_pred ccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 397 HASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 397 H~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
+ ++...+.++..+.+.|||||-+|...
T Consensus 90 -v------------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 90 -I------------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred -H------------------------------------------HHHHHHHHHHhhccCCCCEEeccCCC
Confidence 1 55666666665556999999999754
No 117
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=85.35 E-value=21 Score=38.53 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=93.8
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHH-HHH-HcCCEEEEEecccccCCCccc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLID-KAH-ELGLLVLMDIVHSHASNNVLD 404 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~-~aH-~~GI~VIlDvV~NH~~~~~~~ 404 (823)
+..|++|+++|+|+|+|-++.+....+. +..-|=++.+.--..||-.=|. .++ +.|++|..=+..=-
T Consensus 20 ~~l~~ri~~~~~~tV~Lqaf~d~~gdg~----~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvla------- 88 (294)
T PF14883_consen 20 DKLIQRIKDMGINTVYLQAFADPDGDGN----ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLA------- 88 (294)
T ss_pred HHHHHHHHHcCCCEEEEEeeeCCCCCCc----eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhh-------
Confidence 3688999999999999999987654332 2233445566665666544443 444 89999987765411
Q ss_pred cccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEE-cccccccccccCccccccCCc
Q 003390 405 GLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRF-DGVTSMMYTHHGLQVAFTGNY 483 (823)
Q Consensus 405 ~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~-D~v~~m~~~~~g~~~~f~~~~ 483 (823)
|+-....+...........-...-|.--+|++|+.|.+...-....-.|||+=| |-+- + .++.++.. .
T Consensus 89 ----f~lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~--L-~D~E~~~~----~ 157 (294)
T PF14883_consen 89 ----FDLPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAV--L-SDFEIAAI----R 157 (294)
T ss_pred ----ccCCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCcc--c-cchhhhhh----c
Confidence 111111111000000000001234666689999999999999998449999988 3221 1 11111000 0
Q ss_pred ccccCcccChhHHHHHHHHHHhhhccCCCEEE
Q 003390 484 SEYFGFATDVDAVVYLMLVNDMIHGLYPEAVS 515 (823)
Q Consensus 484 ~~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~ 515 (823)
.+.........-+.|..++.+.++...|++.+
T Consensus 158 ~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~lkT 189 (294)
T PF14883_consen 158 QNPADRQKTRALIDFTMELAAAVRRYRPDLKT 189 (294)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHhCccchh
Confidence 00000001112258999999999998887554
No 118
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=84.73 E-value=8.5 Score=41.42 Aligned_cols=153 Identities=21% Similarity=0.200 Sum_probs=79.3
Q ss_pred hhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHH---HHHHHHHHcCCEEEEEecccccCC
Q 003390 324 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLK---SLIDKAHELGLLVLMDIVHSHASN 400 (823)
Q Consensus 324 ~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk---~LV~~aH~~GI~VIlDvV~NH~~~ 400 (823)
|...+.|.-||+.|||.|-|- |+-.|++.+ | ++--|...|++ ++.++|.+.||+|++|+-++-.-.
T Consensus 63 g~~qD~~~iLK~~GvNyvRlR-vwndP~dsn-g---------n~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwa 131 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLR-VWNDPYDSN-G---------NGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWA 131 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEE-EecCCccCC-C---------CccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhcc
Confidence 344468899999999998764 444444322 1 11223344444 556788899999999986543222
Q ss_pred CccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCcccccc
Q 003390 401 NVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFT 480 (823)
Q Consensus 401 ~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~ 480 (823)
+. ......-.|....|+.-+..|-+|-..++....+| || -.|.|. +..+ ...+|.
T Consensus 132 DP-----------------akQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e-Gi---~pdmVQ-VGNE---tn~gfl 186 (403)
T COG3867 132 DP-----------------AKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE-GI---LPDMVQ-VGNE---TNGGFL 186 (403)
T ss_pred Ch-----------------hhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC---CccceE-eccc---cCCcee
Confidence 10 00111123433334434455666666666666664 44 455552 1111 011122
Q ss_pred CCcccccCcccChhHH-HHHHHHHHhhhccCCCEEEE
Q 003390 481 GNYSEYFGFATDVDAV-VYLMLVNDMIHGLYPEAVSI 516 (823)
Q Consensus 481 ~~~~~~~g~~~d~~~~-~fl~~~~~~v~~~~p~~~~i 516 (823)
.-+++. .+-+.+ ..+++...++++..|++.++
T Consensus 187 wp~Ge~----~~f~k~a~L~n~g~~avrev~p~ikv~ 219 (403)
T COG3867 187 WPDGEG----RNFDKMAALLNAGIRAVREVSPTIKVA 219 (403)
T ss_pred ccCCCC----cChHHHHHHHHHHhhhhhhcCCCceEE
Confidence 111221 132332 45666777788888875443
No 119
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.51 E-value=14 Score=40.43 Aligned_cols=167 Identities=17% Similarity=0.107 Sum_probs=94.9
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCc--ccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec-ccc
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAV--QEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV-HSH 397 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi--~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV-~NH 397 (823)
+...|. +.++.++.+|+|.++|==- ++.+.....++ ....=|.+|++++++-|.++||.||-.+- +.|
T Consensus 15 ~~~~lk-~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~--------~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH 85 (301)
T cd06565 15 KVSYLK-KLLRLLALLGANGLLLYYEDTFPYEGEPEVGR--------MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGH 85 (301)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEEEecceecCCCccccc--------CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHH
Confidence 344555 6899999999999998321 11111111111 11222899999999999999999997764 666
Q ss_pred cCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccc
Q 003390 398 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQV 477 (823)
Q Consensus 398 ~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~ 477 (823)
+..- +. . +.|-....... ....+|-.+|++.+++.+.+.-.++-|.- ..+ |+ |-..
T Consensus 86 ~~~~----l~-~----~~~~~l~~~~~----~~~~l~~~~~~t~~fi~~li~ev~~~f~s-----~~~-HI-----G~DE 141 (301)
T cd06565 86 LEFI----LK-H----PEFRHLREVDD----PPQTLCPGEPKTYDFIEEMIRQVLELHPS-----KYI-HI-----GMDE 141 (301)
T ss_pred HHHH----Hh-C----cccccccccCC----CCCccCCCChhHHHHHHHHHHHHHHhCCC-----CeE-EE-----CCCc
Confidence 6431 11 0 01110000000 02468999999999999999999985441 111 12 2222
Q ss_pred cccCC---cccccCcc-cChhHHHHHHHHHHhhhccCCCEEEEEecC
Q 003390 478 AFTGN---YSEYFGFA-TDVDAVVYLMLVNDMIHGLYPEAVSIGEDV 520 (823)
Q Consensus 478 ~f~~~---~~~~~g~~-~d~~~~~fl~~~~~~v~~~~p~~~~igE~~ 520 (823)
.+.-. +....+.. ...--..|++.+.+.+++..+..++-+|..
T Consensus 142 ~~~~g~~~~~~~~~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~ 188 (301)
T cd06565 142 AYDLGRGRSLRKHGNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDML 188 (301)
T ss_pred ccccCCCHHHHHhcCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHh
Confidence 22111 11111111 111124889999999999888766665554
No 120
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.32 E-value=22 Score=40.05 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEec-ccccCCCccccccCCCCC--CCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHH
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIV-HSHASNNVLDGLNMFDGT--DGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSN 447 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV-~NH~~~~~~~~~~~fdg~--~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~ 447 (823)
|.+|+++||+-|.++||.||-.+- +.|+..-- .....+... ...+... .......||-.+|++.+++.+.
T Consensus 84 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l-~~~pel~~~~~~~~~~~~------~~~~~~~L~~~~~~t~~f~~~l 156 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPEIDMPGHALAAL-AAYPELGCTGGPGSVVSV------QGVVSNVLCPGKPETYTFLEDV 156 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCchhHHHHH-HhCccccCCCCCCccccc------cCcCCCccCCCChhHHHHHHHH
Confidence 799999999999999999999885 77874311 000011110 0000000 0112356899999999999999
Q ss_pred HHHHHHhcCceEEEEcccccccccccCccccccCCcccc---------cCcccChhH--HHHHHHHHHhhhccCCCEEEE
Q 003390 448 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEY---------FGFATDVDA--VVYLMLVNDMIHGLYPEAVSI 516 (823)
Q Consensus 448 l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~---------~g~~~d~~~--~~fl~~~~~~v~~~~p~~~~i 516 (823)
+.-.++-|.-. +-|-|-...+...|... .|. .+... ..|++.+.+.+++.....++-
T Consensus 157 l~E~~~lF~~~-----------~iHiGgDE~~~~~w~~~~~~~~~~~~~g~-~~~~~l~~~f~~~~~~~v~~~G~~~i~W 224 (357)
T cd06563 157 LDEVAELFPSP-----------YIHIGGDEVPKGQWEKSPACQARMKEEGL-KDEHELQSYFIKRVEKILASKGKKMIGW 224 (357)
T ss_pred HHHHHHhCCCC-----------eEEEeccccCCcccccCHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 99998854311 11223333232223210 111 12111 258899999998876666665
Q ss_pred EecC
Q 003390 517 GEDV 520 (823)
Q Consensus 517 gE~~ 520 (823)
.|..
T Consensus 225 ~d~~ 228 (357)
T cd06563 225 DEIL 228 (357)
T ss_pred eccc
Confidence 5543
No 121
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=84.27 E-value=0.71 Score=54.95 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcC-CCCCcEEEEee---cCCCcEEEEEcC----cEEEEEECC
Q 003390 699 FDRAMQHLEEKYGF-MTSEHQYVSRK---DEGDRVIVFERG----NLVFVFNFH 744 (823)
Q Consensus 699 f~r~Li~LRk~~~~-l~~g~~~i~~~---~~~~~Vlaf~R~----~llvv~Nf~ 744 (823)
...+++++|++++. +..|. +.... ...+.|+||.|+ .+++|.+..
T Consensus 775 v~~~aL~lR~~~~elF~~Gd-Y~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Prl 827 (889)
T COG3280 775 VTAAALRLRREHPELFAGGD-YLPLFAAGPAADHVIAFARGKDDQFAITVAPRL 827 (889)
T ss_pred HHHHHHHHHHhchHhhcCCC-eeeecccCchhHHHHHHhhccCCceeEEeehHH
Confidence 56788899999976 44443 33232 233679999993 356665543
No 122
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=83.58 E-value=1.8 Score=37.45 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=15.9
Q ss_pred CCCcEEEEEc----CcEEEEEECC
Q 003390 725 EGDRVIVFER----GNLVFVFNFH 744 (823)
Q Consensus 725 ~~~~Vlaf~R----~~llvv~Nf~ 744 (823)
..++|++|.| +.++||+|.+
T Consensus 7 P~~gvYvYfR~~~~~tVmVilN~n 30 (78)
T PF10438_consen 7 PQDGVYVYFRYYDGKTVMVILNKN 30 (78)
T ss_dssp -BTTEEEEEEEESSEEEEEEEE-S
T ss_pred ccCCEEEEEEEcCCCEEEEEEcCC
Confidence 4577999999 5799999998
No 123
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=82.94 E-value=2.4 Score=47.28 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003390 377 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 456 (823)
Q Consensus 377 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~g 456 (823)
..|++||++|++|+-=+........ ...+ ..|- .+++.+..+++.|.-.++.||
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~-------------~~~~------------~lL~-~~~~~~~~~a~kLv~lak~yG 103 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQV-------------EWLE------------DFLK-KDEDGSFPVADKLVEVAKYYG 103 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCch-------------HHHH------------HHhc-cCcccchHHHHHHHHHHHHhC
Confidence 6789999999999985543221000 0000 0010 114445666777777788899
Q ss_pred ceEEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhccCCCEEEE
Q 003390 457 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHGLYPEAVSI 516 (823)
Q Consensus 457 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~-~~fl~~~~~~v~~~~p~~~~i 516 (823)
+||+=+|.=.... ...+.+. ..|++++++.+++..|+..+|
T Consensus 104 fDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 104 FDGWLINIETELG-------------------DAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred CCceEeeeeccCC-------------------cHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999998632210 1123333 479999999999988876655
No 124
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=82.18 E-value=4.9 Score=44.27 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHH
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARW 450 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~ 450 (823)
+.+++++-|+.||++|++|||=+ +.. .+ . ....++.-++.+++++.-
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~--------~~---~-----------------~~~~~~~~~~~fa~sl~~ 104 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA--------NG---H-----------------VDLNHTAQEDNFVDSIVA 104 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC--------CC---c-----------------cccCCHHHHHHHHHHHHH
Confidence 56889999999999999999864 110 00 0 013456778889999999
Q ss_pred HHHhcCceEEEEcc
Q 003390 451 WLEEYKFDGFRFDG 464 (823)
Q Consensus 451 Wl~e~gvDGfR~D~ 464 (823)
+++++|+||+=||-
T Consensus 105 ~~~~~g~DGiDiD~ 118 (312)
T cd02871 105 IIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHhCCCeEEEec
Confidence 99999999999996
No 125
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=81.66 E-value=4.6 Score=32.69 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=24.7
Q ss_pred CcEEEEEECCCCCcccceEEcccCCceEEEEEeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEE
Q 003390 735 GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 812 (823)
Q Consensus 735 ~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~ 812 (823)
+.++|++||+. ++ ..+.+ +..++++++.... +-.++|||+++.||+
T Consensus 12 ~~y~F~~N~s~-~~---~~v~l--~~~~~dll~g~~~--------------------------~~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 12 GRYLFLLNFSD-EP---QTVTL--PESYTDLLTGETV--------------------------SGGLTLPPYGVRVLK 57 (58)
T ss_dssp TTEEEEEE-SS-S----EE------TT-EEEES---------------------------------SEE-TTEEEEEE
T ss_pred CEEEEEEECCC-CC---EEEEc--CCCceecccCcce--------------------------eeEEEECCCEEEEEE
Confidence 57999999994 22 33443 4567778753110 112899999999987
No 126
>PRK14705 glycogen branching enzyme; Provisional
Probab=80.46 E-value=3.6 Score=52.98 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=54.9
Q ss_pred hhcccccCCcEEcCCcE-EEEEecCCcCeEEEEeecCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003390 175 FSRGYEKFGFIRSDTGI-TYREWAPGAKSASLIGDFNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 253 (823)
Q Consensus 175 f~~~y~~lG~~~~~~gv-~fr~WAP~A~~V~L~gdfN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~ 253 (823)
+..-+.-||.|...+|+ .+|+|-|.|++|.|+.. ....+|++.+.|+|+..+|....+. ...|++++..
T Consensus 516 ~~~p~~~lg~h~~~~~~~~~r~~~p~a~~v~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~y~~~~~~ 585 (1224)
T PRK14705 516 YHAPHSVLGAHLDDHGHVTVRTVKHLAKAVSVVTA-----AGRVPMTHEAHGVWAAVLEPLQAGH-----VPDYRLEVTY 585 (1224)
T ss_pred cCCChHhcCCcCCCCceEEEEEECCCCeEEEEEeC-----CCceeeeeCCCCEEEEeccccccCC-----CCCeEEEEEe
Confidence 45566799999888885 69999999999999741 2234788888899999998421111 1137777765
Q ss_pred CCCc-ccccCccc
Q 003390 254 PSGI-KDSIPAWI 265 (823)
Q Consensus 254 ~~~~-~~~~~~~~ 265 (823)
.++. ....+||.
T Consensus 586 ~~~~~~~~~d~y~ 598 (1224)
T PRK14705 586 DGAEPVTIDDPYH 598 (1224)
T ss_pred CCccceEeccccc
Confidence 4432 23445554
No 127
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=80.28 E-value=2 Score=38.54 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=40.2
Q ss_pred EEEEEecC--CcCeEEEEeecC---CCCC-cccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003390 191 ITYREWAP--GAKSASLIGDFN---NWNP-NADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256 (823)
Q Consensus 191 v~fr~WAP--~A~~V~L~gdfN---~w~~-~~~~m~r~----~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~ 256 (823)
++|++-+. -.+.|.|+|+.. +|++ .+.+|... ...+|++.|.-.. +. ...|||.+...+|
T Consensus 4 V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~-~~-----~~eYKy~i~~~~g 73 (96)
T PF00686_consen 4 VTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPA-GT-----PFEYKYVIKDADG 73 (96)
T ss_dssp EEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEET-TS-----EEEEEEEEEETTS
T ss_pred EEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcC-CC-----EEEEEEEEEeCCC
Confidence 67887333 336899999875 7997 56788865 4589999985322 21 2478887765544
No 128
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=80.16 E-value=2 Score=46.93 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=36.0
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
+-|+...+.|++-|... +..... | +-+-..-|++|++.||+.||+||+|+-+.
T Consensus 20 ~Yi~~~~~~Gf~~IFts-l~~~~~---~------------~~~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 20 AYIDRMHKYGFKRIFTS-LLIPEE---D------------AELYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred HHHHHHHHcCccceeee-cccCCc---h------------HHHHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 46677778999998632 221111 0 00223569999999999999999998754
No 129
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=79.31 E-value=9.6 Score=44.22 Aligned_cols=84 Identities=15% Similarity=0.138 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEec-ccccCCCcc---ccccCC--CCCCC---CccccCCC---CC--cccCCCCCCCCC
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIV-HSHASNNVL---DGLNMF--DGTDG---HYFHSGSR---GY--HWMWDSRLFNYG 436 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV-~NH~~~~~~---~~~~~f--dg~~~---~yf~~~~~---g~--~~~w~~~~ln~~ 436 (823)
|.+|+++||+-|+++||.||-.|- +.|+..--. .....+ .|... .|...+.. .+ ...|....||-.
T Consensus 95 T~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~ 174 (445)
T cd06569 95 SRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYLSVQFYTDNVINPC 174 (445)
T ss_pred CHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccccccccccccccCC
Confidence 799999999999999999998885 788753100 000000 01100 11111110 00 012334579999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 003390 437 SWEVLRFLLSNARWWLEE 454 (823)
Q Consensus 437 ~~~V~~~l~~~l~~Wl~e 454 (823)
+|++.+||.+.+.-.++-
T Consensus 175 ~~~ty~fl~~vl~Ev~~l 192 (445)
T cd06569 175 MPSTYRFVDKVIDEIARM 192 (445)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 999999999999988873
No 130
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=78.43 E-value=13 Score=40.88 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 003390 375 LKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEE 454 (823)
Q Consensus 375 lk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e 454 (823)
..++++.||++|++|++=|- +... . .|+. ..|+ --..+++.|+.+++++.-++++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~-~------~~~~---~~~~--------------~~l~~~~~r~~fi~~iv~~l~~ 101 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTN-G------NFDS---ELAH--------------AVLSNPEARQRLINNILALAKK 101 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCC-C------CCCH---HHHH--------------HHhcCHHHHHHHHHHHHHHHHH
Confidence 36899999999999997643 1111 0 0100 0010 1134688899999999999998
Q ss_pred cCceEEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhcc
Q 003390 455 YKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 509 (823)
Q Consensus 455 ~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~ 509 (823)
+|+||+-+|--. + ...+.+ -..|+++++..+++.
T Consensus 102 ~~~DGidiDwE~-~--------------------~~~d~~~~~~fl~~lr~~l~~~ 136 (313)
T cd02874 102 YGYDGVNIDFEN-V--------------------PPEDREAYTQFLRELSDRLHPA 136 (313)
T ss_pred hCCCcEEEeccc-C--------------------CHHHHHHHHHHHHHHHHHhhhc
Confidence 999999998531 1 011222 247899999998754
No 131
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=78.28 E-value=8.9 Score=34.59 Aligned_cols=60 Identities=20% Similarity=0.419 Sum_probs=42.5
Q ss_pred EEEEEecCC---cCeEEEEee---cCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCC
Q 003390 191 ITYREWAPG---AKSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPS 255 (823)
Q Consensus 191 v~fr~WAP~---A~~V~L~gd---fN~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~ 255 (823)
++|++-.|. -+.|+|+|+ +.+|++. +.+|+..+...|++.++-.... ....|||.+...+
T Consensus 2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~-----~~ieYKyvi~~~~ 68 (99)
T cd05816 2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDS-----FPFEYKYIIANKD 68 (99)
T ss_pred EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCC-----ccEEEEEEEEeCC
Confidence 689999885 368999986 4689864 4689888889998887643211 0247888776543
No 132
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=77.49 E-value=1.9 Score=47.68 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=35.7
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 395 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 395 (823)
+++|..+|++|+|+|..-=.+..-.. .-| .-| |....||..|++.|+++||.|||-.=+
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~-~~g--~~d-------f~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEP-EEG--QFD-------FTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSS-BTT--B----------SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred HHHHHHHHhCCcceEEEeccccccCC-CCC--ccc-------ccchhhHHHHHHHHHHcCcEEEecccc
Confidence 36899999999999986432221000 001 112 223478999999999999999998543
No 133
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=77.14 E-value=5.1 Score=48.68 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=55.0
Q ss_pred cEEEEEecCCcCeEEEEeecC-C-CCCc---ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCCcccccCcc
Q 003390 190 GITYREWAPGAKSASLIGDFN-N-WNPN---ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSGIKDSIPAW 264 (823)
Q Consensus 190 gv~fr~WAP~A~~V~L~gdfN-~-w~~~---~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~~~~~~~~~ 264 (823)
|.++++|+|+|+.+.+.+.-+ + |++. .+.|+|...|.|...|.+......+...+..|.+.+.......+..+++
T Consensus 68 G~iw~~~~p~~~~g~~y~yr~~g~~~~~~g~~f~~~k~l~dpya~~l~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 147 (697)
T COG1523 68 GAIWHLWLPGAKPGQVYGYRVHGPYDPEEGHRFDPNKLLLDPYAKALDGDLKWGTPALFGYYYGYQITNLSPDRDSADPY 147 (697)
T ss_pred ccEEEEEcCCCceeeEEEEecCCCcCCccCeeeccccccccceeEEeccccccCccccccccccccccccCccccccccC
Confidence 448999999999999998432 2 4432 3578888999999999987755433334455555444333234556666
Q ss_pred ceeeccCC
Q 003390 265 IKFSVQAP 272 (823)
Q Consensus 265 ~~~~~~~~ 272 (823)
.+.++..+
T Consensus 148 ~Ksvv~~~ 155 (697)
T COG1523 148 PKSVVIDP 155 (697)
T ss_pred CceEEecc
Confidence 66666554
No 134
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=77.06 E-value=3.2 Score=50.68 Aligned_cols=90 Identities=16% Similarity=0.275 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeccc--ccCCCccccccCC-----CCCCCCccccCCCCCcccCCCCCCCCCCHHH--HHH
Q 003390 373 DDLKSLIDKAHELGLLVLMDIVHS--HASNNVLDGLNMF-----DGTDGHYFHSGSRGYHWMWDSRLFNYGSWEV--LRF 443 (823)
Q Consensus 373 edlk~LV~~aH~~GI~VIlDvV~N--H~~~~~~~~~~~f-----dg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V--~~~ 443 (823)
.+++++-+.|+++||++|-|+.+. +-|.+.......| -|.+|.+|... | ..||.|.+|+..=+- -+.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~--G--QnWG~P~YnW~~l~~dgY~W 349 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDAN--G--QNWGFPTYDWEEMAEDDYAW 349 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcc--c--CcCCCCCcCHHHHHhcCcHH
Confidence 678888999999999999999864 3333321111122 46777788543 3 357888887642110 012
Q ss_pred HHHHHHHHHHhcCceEEEEcccccc
Q 003390 444 LLSNARWWLEEYKFDGFRFDGVTSM 468 (823)
Q Consensus 444 l~~~l~~Wl~e~gvDGfR~D~v~~m 468 (823)
..+.+++-++ .+|++|+|.+-.+
T Consensus 350 Wr~Rlr~~~~--~~dalRIDH~~Gf 372 (745)
T PLN03236 350 WRARMQHLEQ--FFSAIRIDHILGF 372 (745)
T ss_pred HHHHHHHHHH--hCCeEEeechhhh
Confidence 2333433333 5799999987654
No 135
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=76.71 E-value=5.8 Score=37.19 Aligned_cols=56 Identities=18% Similarity=0.501 Sum_probs=39.6
Q ss_pred EEEEEecC---CcCeEEEEee---cCCCCCc-ccccccC--CCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003390 191 ITYREWAP---GAKSASLIGD---FNNWNPN-ADIMTQN--EFGVWEIFLPNNADGSPPIPHGSRVKIHMD 252 (823)
Q Consensus 191 v~fr~WAP---~A~~V~L~gd---fN~w~~~-~~~m~r~--~~GvWei~ip~~~~g~~~~~~g~~y~~~~~ 252 (823)
++|++-+| -.+.|.|+|+ +.+|++. +.+|++. ....|++.|.-.. +. -..|||.+.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~-~~-----~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPR-GV-----DFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECC-CC-----eEEEEEEEE
Confidence 78999886 3468999998 8899864 4689876 6789988775321 11 246777663
No 136
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=75.66 E-value=5.3 Score=43.52 Aligned_cols=66 Identities=27% Similarity=0.452 Sum_probs=37.2
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCC---CCCCCcc--------ccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYY---ASFGYHV--------TNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~---~~~GY~~--------~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
.-|+.+|+-|||.|+++-+-+.... ...|+.+ .||..+++.| -+-+.++|+.|.++||.+ ++|+-
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~--~lv~~ 109 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA--ALVPF 109 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE--EEESS
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE--EEEEE
Confidence 5699999999999999766553211 1123222 3555555544 577889999999999988 46665
Q ss_pred c
Q 003390 397 H 397 (823)
Q Consensus 397 H 397 (823)
|
T Consensus 110 w 110 (289)
T PF13204_consen 110 W 110 (289)
T ss_dssp -
T ss_pred E
Confidence 5
No 137
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.30 E-value=20 Score=39.59 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=72.2
Q ss_pred HhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCc-----CCCCCCHHHHHHHHHHHHHcCCEEEEEec-cc
Q 003390 323 ANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAP-----SSRCGTPDDLKSLIDKAHELGLLVLMDIV-HS 396 (823)
Q Consensus 323 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~-----~~~~Gt~edlk~LV~~aH~~GI~VIlDvV-~N 396 (823)
..|. +.|+.+..+++|.++|-=.-. .+|.+.+..|=.+ ...|=|.+|+++||+-|.++||.||-.+- +.
T Consensus 18 ~~ik-~~Id~ma~~KlN~lh~HltDd----~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PG 92 (311)
T cd06570 18 AVIK-RQLDAMASVKLNVFHWHLTDD----QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPG 92 (311)
T ss_pred HHHH-HHHHHHHHhCCeEEEEEEecC----CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCcc
Confidence 4444 688999999999877631100 1122222222111 11233899999999999999999998885 78
Q ss_pred ccCCCccccccCCCC---CCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 003390 397 HASNNVLDGLNMFDG---TDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEY 455 (823)
Q Consensus 397 H~~~~~~~~~~~fdg---~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~ 455 (823)
|+..- +..+.. ....+.. . ..+......||..+|++.+++.+.+.-+++-|
T Consensus 93 H~~a~----~~~ypel~~~~~~~~~--~--~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 93 HASAI----AVAYPELASGPGPYVI--E--RGWGVFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred chHHH----HHhCHHhccCCCcccc--c--cccccCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 88531 111110 0000000 0 01111234699999999999999999998744
No 138
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=75.11 E-value=50 Score=36.15 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=57.9
Q ss_pred hhHHHcCCCEEEECCcccC-CCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCC
Q 003390 331 PRIKRLGYNAVQIMAVQEH-SYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMF 409 (823)
Q Consensus 331 ~yLk~LGvt~I~L~Pi~e~-~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~f 409 (823)
.+.++.|+++|-|-=+... .....|+-. ....+...++.-|.+|+++|++||+=+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~--------~~~~~~~~~~~~i~~lk~~G~kViiS~---------------- 74 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGS--------YPLDQGGWIKSDIAALRAAGGDVIVSF---------------- 74 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCC--------CCcccchhHHHHHHHHHHcCCeEEEEe----------------
Confidence 4677899999987533322 122345421 011135678888999999999999831
Q ss_pred CCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcc
Q 003390 410 DGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 464 (823)
Q Consensus 410 dg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~ 464 (823)
-|....++.. +..-++.+..++.-.++.|++||+-||-
T Consensus 75 GG~~g~~~~~-----------------~~~~~~~~~~a~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 75 GGASGTPLAT-----------------SCTSADQLAAAYQKVIDAYGLTHLDFDI 112 (294)
T ss_pred cCCCCCcccc-----------------CcccHHHHHHHHHHHHHHhCCCeEEEec
Confidence 1111111111 2234567777777788889999999985
No 139
>PLN02316 synthase/transferase
Probab=71.62 E-value=46 Score=42.59 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccC
Q 003390 317 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH 349 (823)
Q Consensus 317 ~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~ 349 (823)
.+.|-+..+....-..|+++|.+.--+||-+..
T Consensus 601 aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~ 633 (1036)
T PLN02316 601 AKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDC 633 (1036)
T ss_pred CCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence 356777766655667789999999999997753
No 140
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=71.36 E-value=48 Score=35.84 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=39.1
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCC-ccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGY-HVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 393 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY-~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDv 393 (823)
++.... .-+|+-+++|+..|.+--=++ . |++ ...|+..+.+. .++++||+-|+++|++|+|=+
T Consensus 30 ~t~~~k-~yIDfAa~~G~eYvlvD~GW~----~-~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 30 TTETQK-RYIDFAAEMGIEYVLVDAGWY----G-WEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp SHHHHH-HHHHHHHHTT-SEEEEBTTCC----G-S--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHH-HHHHHHHHcCCCEEEeccccc----c-ccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEE
Confidence 666666 689999999999998722111 1 111 24455555554 789999999999999999854
No 141
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=70.98 E-value=30 Score=37.18 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=92.8
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCcc-cc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVL-DG 405 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~-~~ 405 (823)
+..+.-|.+-+++.|-+=|-. ..+..+=.+++++|.+. +.|.++|.=+-+.-+..-.. +.
T Consensus 33 d~~~~~i~~~~f~llVVDps~---------------~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR~Ywd 93 (300)
T COG2342 33 DAYINEILNSPFDLLVVDPSY---------------CGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYRFYWD 93 (300)
T ss_pred cchHHHHhcCCCcEEEEeccc---------------cCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhhhHhh
Confidence 467777888888888665521 12223335688888764 45677776666554433210 00
Q ss_pred ccCCCCCCCCccccCCCCCcccC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcc
Q 003390 406 LNMFDGTDGHYFHSGSRGYHWMW-DSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYS 484 (823)
Q Consensus 406 ~~~fdg~~~~yf~~~~~g~~~~w-~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~ 484 (823)
..... ..+.|.-. ..+.| |.-...|-.|+-++.+.+-+...++ .|+||.-+|.|....|-. ...
T Consensus 94 ~~w~~-~~p~wLg~----edP~W~Gny~VkYW~~eWkdii~~~l~rL~d-~GfdGvyLD~VD~y~Y~~---------~~~ 158 (300)
T COG2342 94 KYWLT-GRPDWLGE----EDPEWPGNYAVKYWEPEWKDIIRSYLDRLID-QGFDGVYLDVVDAYWYVE---------WND 158 (300)
T ss_pred hhhhc-CCcccccC----CCCCCCCCceeeccCHHHHHHHHHHHHHHHH-ccCceEEEeeechHHHHH---------Hhc
Confidence 00011 11122111 12234 2345678889999999999999888 899999999996542210 001
Q ss_pred cccCcccChhHHHHHHHHHHhhhccCCCEEEEE
Q 003390 485 EYFGFATDVDAVVYLMLVNDMIHGLYPEAVSIG 517 (823)
Q Consensus 485 ~~~g~~~d~~~~~fl~~~~~~v~~~~p~~~~ig 517 (823)
..-+.+....-+.|+.++.+.++..+|.+.+|-
T Consensus 159 ~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~ 191 (300)
T COG2342 159 RETGVNAAKKMVKFIAAIAEYARAANPLFRVIP 191 (300)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 111222223345789999999999999966663
No 142
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=70.54 E-value=8.8 Score=40.40 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=36.2
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 393 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDv 393 (823)
++-|.++|+||+++|+|+-=+ ..+ ..++..++|+.+|++|++|+-.+
T Consensus 74 ~~Yl~~~k~lGf~~IEiS~G~---------------~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 74 DEYLNECDELGFEAVEISDGS---------------MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHHcCCCEEEEcCCc---------------cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 356679999999999986421 111 35889999999999999999653
No 143
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=69.21 E-value=8.2 Score=43.37 Aligned_cols=58 Identities=21% Similarity=0.403 Sum_probs=37.9
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCC-CCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRC-GTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~-Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
++.... +.|...+++|++.|... +. .|+..- -..+.|++|++.||+.||.||+||-+.
T Consensus 12 ~~~~~~-~yi~~a~~~Gf~~iFTS-L~----------------ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENK-AYIEKAAKYGFKRIFTS-LH----------------IPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHH-HHHHHHHCTTEEEEEEE-E-------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHH-HHHHHHHHCCCCEEECC-CC----------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 455555 57777889999999753 11 111111 236899999999999999999998754
No 144
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=68.60 E-value=9.3 Score=46.77 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCC----CCCCccccccCcCCCCCCHHHHH
Q 003390 317 PIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYA----SFGYHVTNFFAPSSRCGTPDDLK 376 (823)
Q Consensus 317 ~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~----~~GY~~~~~~a~~~~~Gt~edlk 376 (823)
-++|+|..+. +.++.+++.|.+.|||+||.....++ |.-|.+.+=|+.+|-|=.++.|-
T Consensus 77 ~GIGDfgdL~-~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 77 VGAGDFGDLE-ALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred CCcccHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 5789999977 79999999999999999998754222 34689999999998888876664
No 145
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=68.19 E-value=16 Score=32.95 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=38.1
Q ss_pred EEEEEecCCc---CeEEEEe---ecCCCCCccccccc---CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003390 191 ITYREWAPGA---KSASLIG---DFNNWNPNADIMTQ---NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256 (823)
Q Consensus 191 v~fr~WAP~A---~~V~L~g---dfN~w~~~~~~m~r---~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~ 256 (823)
++|++=.|.- +.|+|+| ++.+|+....+|.. ...+.|++.|... .|. -..|||.+...++
T Consensus 5 v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp-~~~-----~veyKyv~~~~~~ 73 (99)
T cd05809 5 QTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLP-AGR-----NIEFKAIKKSKDG 73 (99)
T ss_pred EEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEec-CCC-----cEEEEEEEEcCCC
Confidence 6788755443 6899999 67899876544432 3468998877532 222 2478887754443
No 146
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=67.48 E-value=16 Score=32.94 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=39.3
Q ss_pred EEEEEecCCc--CeEEEEee---cCCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003390 191 ITYREWAPGA--KSASLIGD---FNNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 253 (823)
Q Consensus 191 v~fr~WAP~A--~~V~L~gd---fN~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~ 253 (823)
++|++-+|.. +.|.|+|+ ..+|++. +.+|+..+..+|++.+.-.. +. ...|||.+..
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~-~~-----~veYKY~i~~ 64 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPE-SV-----YIEYKYFVSN 64 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECC-CC-----cEEEEEEEEe
Confidence 5676665544 78999997 5689874 46898878889988775322 11 3578887743
No 147
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=67.16 E-value=8.3 Score=44.21 Aligned_cols=59 Identities=29% Similarity=0.396 Sum_probs=39.5
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccC-cCCCCCC---HHHHHHHHHHHHHcCCEEEEEec
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA-PSSRCGT---PDDLKSLIDKAHELGLLVLMDIV 394 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a-~~~~~Gt---~edlk~LV~~aH~~GI~VIlDvV 394 (823)
+++.+.++|++|+|+|-|. +||....... .+|.+=. ..=+.+.|+.|.++||+|++|+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiP----------i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIP----------IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEcc----------cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 3478999999999999863 2222211111 3444432 23466779999999999999974
No 148
>PLN03059 beta-galactosidase; Provisional
Probab=66.89 E-value=8.5 Score=47.52 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=39.6
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDI 393 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDv 393 (823)
++|..+|++|+|+|..-= -|.++--. .=.-.|.+..||.++++.|++.||.|||=.
T Consensus 63 d~L~k~Ka~GlNtV~tYV--------~Wn~HEp~--~G~~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYV--------FWNGHEPS--PGNYYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHcCCCeEEEEe--------cccccCCC--CCeeeccchHHHHHHHHHHHHcCCEEEecC
Confidence 688999999999997422 23222110 001134568999999999999999999973
No 149
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=64.69 E-value=9.8 Score=41.57 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=29.7
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccC
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHAS 399 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~ 399 (823)
.-+++||+||+|+|-+--|- |.- .-+++.. ++.+.||.||+|+---+.+
T Consensus 57 rDi~~l~~LgiNtIRVY~vd-------------------p~~-nHd~CM~---~~~~aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 57 RDIPLLKELGINTIRVYSVD-------------------PSK-NHDECMS---AFADAGIYVILDLNTPNGS 105 (314)
T ss_dssp HHHHHHHHHT-SEEEES----------------------TTS---HHHHH---HHHHTT-EEEEES-BTTBS
T ss_pred HhHHHHHHcCCCEEEEEEeC-------------------CCC-CHHHHHH---HHHhCCCEEEEecCCCCcc
Confidence 57899999999999865443 322 2255544 4666899999998755443
No 150
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=64.64 E-value=12 Score=42.68 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=32.7
Q ss_pred cCC-CCCCCCC-----CHHHHHHHHHHHHHHHHhcCceEEEEcccccc
Q 003390 427 MWD-SRLFNYG-----SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSM 468 (823)
Q Consensus 427 ~w~-~~~ln~~-----~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m 468 (823)
.|| ...|+|+ +|.++++|.+..+.-.+ -++|||+|..++.
T Consensus 359 vWGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST 404 (423)
T PF14701_consen 359 VWGDCVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST 404 (423)
T ss_pred ecCceeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC
Confidence 354 4678885 68999999999988888 7999999998664
No 151
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=63.80 E-value=20 Score=32.77 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=40.8
Q ss_pred ccCCcEEcCCcEEEEEecCC--cCeEEEEeecCC--CCCcccccccCC----CceEEEEeCCCCCCCCCCCCCCEEEEEE
Q 003390 180 EKFGFIRSDTGITYREWAPG--AKSASLIGDFNN--WNPNADIMTQNE----FGVWEIFLPNNADGSPPIPHGSRVKIHM 251 (823)
Q Consensus 180 ~~lG~~~~~~gv~fr~WAP~--A~~V~L~gdfN~--w~~~~~~m~r~~----~GvWei~ip~~~~g~~~~~~g~~y~~~~ 251 (823)
.++|+ +-+++|++++. +++|.|+..-.. +.....+|.+.. ...|+++|+... | -..|.|.+
T Consensus 11 ~p~ga----~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~------~~~Y~F~l 79 (116)
T cd02857 11 YPYGA----DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPT-G------RLRYYFEL 79 (116)
T ss_pred EEcCC----CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCC-c------EEEEEEEE
Confidence 37777 56899999875 578888753221 233456887642 357999998542 2 23677777
Q ss_pred eCC
Q 003390 252 DTP 254 (823)
Q Consensus 252 ~~~ 254 (823)
...
T Consensus 80 ~~~ 82 (116)
T cd02857 80 VDD 82 (116)
T ss_pred EcC
Confidence 543
No 152
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=63.55 E-value=22 Score=31.46 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=38.8
Q ss_pred EEEEEec--CCcCeEEEEeec---CCCCC-cccccccCC-CceEEEEeCCCC-CCCCCCCCCCEEEEEEeCCC
Q 003390 191 ITYREWA--PGAKSASLIGDF---NNWNP-NADIMTQNE-FGVWEIFLPNNA-DGSPPIPHGSRVKIHMDTPS 255 (823)
Q Consensus 191 v~fr~WA--P~A~~V~L~gdf---N~w~~-~~~~m~r~~-~GvWei~ip~~~-~g~~~~~~g~~y~~~~~~~~ 255 (823)
++|++-+ .--+.+.|+|+. -+|++ .+.+|+..+ .+.|++.++-.. .+. -..|||.+...+
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~-----~~~yKy~~~~~~ 69 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQ-----VIEYKYVIVDDD 69 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCC-----eEEEEEEEECCC
Confidence 4566654 334688999875 47886 457898777 899998876332 111 247888765443
No 153
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=62.59 E-value=98 Score=31.29 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 003390 371 TPDDLKSLIDKAHEL--GLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 448 (823)
Q Consensus 371 t~edlk~LV~~aH~~--GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l 448 (823)
..+.....+.++|++ |++|++=+--. .. ...+ --..++..|+.+++++
T Consensus 47 ~~~~~~~~i~~l~~~~~g~kv~~sigg~-~~--------------~~~~---------------~~~~~~~~~~~f~~~~ 96 (210)
T cd00598 47 SEEPLKGALEELASKKPGLKVLISIGGW-TD--------------SSPF---------------TLASDPASRAAFANSL 96 (210)
T ss_pred ccHHHHHHHHHHHHhCCCCEEEEEEcCC-CC--------------CCCc---------------hhhcCHHHHHHHHHHH
Confidence 345566777888887 99999865210 00 0000 1135677888899999
Q ss_pred HHHHHhcCceEEEEccc
Q 003390 449 RWWLEEYKFDGFRFDGV 465 (823)
Q Consensus 449 ~~Wl~e~gvDGfR~D~v 465 (823)
.-+++++++||+=+|--
T Consensus 97 ~~~v~~~~~DGidiD~E 113 (210)
T cd00598 97 VSFLKTYGFDGVDIDWE 113 (210)
T ss_pred HHHHHHcCCCceEEeee
Confidence 99999999999999963
No 154
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=62.09 E-value=14 Score=45.08 Aligned_cols=64 Identities=6% Similarity=0.060 Sum_probs=51.7
Q ss_pred CCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccC---CCCCCCCCccccccCcCCCCCCHHHHHHHHH
Q 003390 316 EPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEH---SYYASFGYHVTNFFAPSSRCGTPDDLKSLID 380 (823)
Q Consensus 316 ~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~---~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~ 380 (823)
+-++|+|..+. +.++.+++.|.+.|+|+|+..- ..+.+.-|.+.+=|+.+|-|=.++.+-++..
T Consensus 158 ~~GIGDfgdl~-~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~~ 224 (695)
T PRK11052 158 NWGIGDFGDLK-QMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQQ 224 (695)
T ss_pred CCCeecHHHHH-HHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhhh
Confidence 45789999977 7999999999999999999852 1123567999999999999888887766543
No 155
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=61.86 E-value=9.8 Score=42.35 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=70.7
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccC------cCC----CCCCHHHHHHHHHHHHHcCCEEE
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFA------PSS----RCGTPDDLKSLIDKAHELGLLVL 390 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a------~~~----~~Gt~edlk~LV~~aH~~GI~VI 390 (823)
+...|. +.|+.+..+++|.++|=---. .+|.+....|=. ..+ .+=|.+|+++||+.|+++||.||
T Consensus 16 ~~~~ik-~~id~ma~~k~N~lhlhl~D~----~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 16 SVDTIK-RLIDQMAYYKLNVLHLHLSDD----QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVI 90 (351)
T ss_dssp -HHHHH-HHHHHHHHTT-SEEEEEEESS----TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHH-HHHHHHHHcCCcEEEEEEecC----CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCcee
Confidence 445566 689999999999999732111 112221111110 011 13378999999999999999999
Q ss_pred EEec-ccccCCCcc--ccccCC-CCCCCCccccCCCCCcccCC--CCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003390 391 MDIV-HSHASNNVL--DGLNMF-DGTDGHYFHSGSRGYHWMWD--SRLFNYGSWEVLRFLLSNARWWLEEYK 456 (823)
Q Consensus 391 lDvV-~NH~~~~~~--~~~~~f-dg~~~~yf~~~~~g~~~~w~--~~~ln~~~~~V~~~l~~~l~~Wl~e~g 456 (823)
-.|- +.|+..--. ..+... ...+..+.. ...+. ...||..+|++.+++.+.+.-.++-+.
T Consensus 91 Peid~PGH~~~~l~~~p~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 91 PEIDTPGHAEAWLKAYPELGCSAWPEDKSWPN------STCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp EEEEESSS-HHHHHHHHHHCCCHTTCSSSCEE------EETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred eeccCchHHHHHHHhCchhhcccccccccccc------ccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 9885 788854210 000000 000001110 01111 136999999999999999999998666
No 156
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=57.15 E-value=41 Score=37.55 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
.+.||+|++++|+.|-++++-+. |.+..
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL~--H~G~~ 106 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQLW--HAGRQ 106 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE----GGG
T ss_pred HHHHHHHHHHHHhcCccceeecc--ccccc
Confidence 68899999999999999999976 44443
No 157
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=56.88 E-value=1.7e+02 Score=33.30 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
.+.||+|++++|++|-++++-+. |.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~--H~ 106 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLT--AG 106 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEcc--Cc
Confidence 57899999999999999998875 54
No 158
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=56.17 E-value=41 Score=29.87 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=37.6
Q ss_pred EEEEEecCCc---CeEEEEee---cCCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEe
Q 003390 191 ITYREWAPGA---KSASLIGD---FNNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMD 252 (823)
Q Consensus 191 v~fr~WAP~A---~~V~L~gd---fN~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~ 252 (823)
++|++-+|+- +.+.|+|+ .-+|+. ..+|...+.+.|++.+.-. .+. ...|||.+.
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~-~~~l~~~~~~~W~~~v~lp-~~~-----~ieYky~~~ 63 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHS-YIPLQYVKDGFWSASVSLP-VDT-----HVEWKFVLV 63 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCc-cccCcCCCCCCEEEEEEec-CCC-----cEEEEEEEE
Confidence 6788877753 45678885 357986 6899887888997776422 121 357888764
No 159
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=55.93 E-value=19 Score=39.75 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003390 377 SLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 456 (823)
Q Consensus 377 ~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~g 456 (823)
..|++||++|++|+==+.+.+-.... +-...+.+. ..+ .-.+-+.|++. ++.||
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~-~~~~ll~~~--------~~g-------------~~~~A~kLi~i----a~~yG 99 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAE-WCEELLEKD--------EDG-------------SFPYADKLIEI----AKYYG 99 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HH-HHHHHT-----------TTS---------------HHHHHHHHH----HHHHT
T ss_pred hhHHHHHhcCceEEEEEEecCCchHH-HHHHHHcCC--------ccc-------------ccHHHHHHHHH----HHHcC
Confidence 57899999999998776662221100 000001111 111 11233444444 44589
Q ss_pred ceEEEEcccccccccccCccccccCCcccccCcccC-hhHHHHHHHHHHhhhccCCCEEEE
Q 003390 457 FDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVSI 516 (823)
Q Consensus 457 vDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d-~~~~~fl~~~~~~v~~~~p~~~~i 516 (823)
+||+=+--=..+. ...+ ..-+.|++++++.+++ .|+..++
T Consensus 100 FDGw~iN~E~~~~-------------------~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 100 FDGWLINIETPLS-------------------GPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp --EEEEEEEESST-------------------TGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred CCceEEEecccCC-------------------chhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 9998664322110 0012 2335899999999999 8876554
No 160
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=55.40 E-value=1.3e+02 Score=33.83 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 78 i~~~~~lad~vH~~Ga~i~~QL~--H~Gr~ 105 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQLW--HTGRI 105 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEecc--CCCCC
Confidence 68899999999999999999765 66554
No 161
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.34 E-value=1.3e+02 Score=33.58 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
.+.||+|++++|++|-++++-+- |.+..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~--h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLN--HPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcc--CCCcC
Confidence 68899999999999999998865 55554
No 162
>TIGR03356 BGL beta-galactosidase.
Probab=54.30 E-value=31 Score=39.78 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=62.6
Q ss_pred CCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 319 INTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 319 ~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
+..|.-.. +-|..||+||+|++-+.=-+. .... -|-. . ..-...+-++++|++|+++||.+|+++.+ .
T Consensus 50 ~d~y~~y~-eDi~l~~~~G~~~~R~si~Ws-ri~p-~g~~-----~--~n~~~~~~y~~~i~~l~~~gi~pivtL~H--f 117 (427)
T TIGR03356 50 CDHYHRYE-EDVALMKELGVDAYRFSIAWP-RIFP-EGTG-----P--VNPKGLDFYDRLVDELLEAGIEPFVTLYH--W 117 (427)
T ss_pred ccHHHhHH-HHHHHHHHcCCCeEEcccchh-hccc-CCCC-----C--cCHHHHHHHHHHHHHHHHcCCeeEEeecc--C
Confidence 34555555 799999999999997532111 1000 0100 0 11123577899999999999999999874 2
Q ss_pred CCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003390 399 SNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 456 (823)
Q Consensus 399 ~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~g 456 (823)
. .|.++... . -+.++++.+.+.+.++.-+++||
T Consensus 118 d-------------~P~~l~~~-g-----------Gw~~~~~~~~f~~ya~~~~~~~~ 150 (427)
T TIGR03356 118 D-------------LPQALEDR-G-----------GWLNRDTAEWFAEYAAVVAERLG 150 (427)
T ss_pred C-------------ccHHHHhc-C-----------CCCChHHHHHHHHHHHHHHHHhC
Confidence 1 12222211 1 23467788888888888888776
No 163
>PTZ00445 p36-lilke protein; Provisional
Probab=52.82 E-value=29 Score=36.02 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=41.3
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEE----CCcccCCCCCCCCCccccccCcCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQI----MAVQEHSYYASFGYHVTNFFAPSSRCGT--PDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L----~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt--~edlk~LV~~aH~~GI~VIl 391 (823)
+..+.++...+.|+++||.+|-+ +=|--| +-||+--+ +-+.++++ ..+|+.|+.++.++||+|++
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKH----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhh----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 34455556778899999999953 111112 23444332 22333433 34599999999999999975
No 164
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=52.76 E-value=57 Score=34.87 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHH
Q 003390 369 CGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNA 448 (823)
Q Consensus 369 ~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l 448 (823)
.+...++.+=|.+|++.|++|||=| . |.. .+ . |. .+ -.+++-|+.+++++
T Consensus 55 ~~~~~~~~~~i~~~~~~g~KVllSi--G--------G~~--~~---~-fs-------------~~-a~~~~~r~~f~~s~ 104 (256)
T cd06546 55 HPRFTTLWTELAILQSSGVKVMGML--G--------GAA--PG---S-FS-------------RL-DDDDEDFERYYGQL 104 (256)
T ss_pred cchhhHHHHHHHHHHhCCCEEEEEE--C--------CCC--CC---C-cc-------------cc-cCCHHHHHHHHHHH
Confidence 3344456666778899999999843 1 100 00 0 10 01 13455566667788
Q ss_pred HHHHHhcCceEEEEcc
Q 003390 449 RWWLEEYKFDGFRFDG 464 (823)
Q Consensus 449 ~~Wl~e~gvDGfR~D~ 464 (823)
.-++++|++||+=||-
T Consensus 105 ~~~~~~~~~DGiDiDw 120 (256)
T cd06546 105 RDMIRRRGLDGLDLDV 120 (256)
T ss_pred HHHHHHhCCCceEEee
Confidence 8888889999999985
No 165
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=52.34 E-value=26 Score=37.20 Aligned_cols=48 Identities=31% Similarity=0.455 Sum_probs=35.1
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 394 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV 394 (823)
++-|.++|+|||++|+++-=+ ..+ +.++..++|+.+.++|++|+-.+=
T Consensus 87 ~~yl~~~k~lGf~~IEiSdGt---------------i~l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 87 DEYLEECKELGFDAIEISDGT---------------IDL-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHCT-SEEEE--SS---------------S--------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEecCCc---------------eeC-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 468899999999999975311 011 258899999999999999998753
No 166
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=51.89 E-value=19 Score=33.61 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=29.2
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
.+.++.+.++|+.+|||.|= .+-+++++.|+++||+|+-
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g--------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG--------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT--------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHcCCCEEEEEcc--------------------------hHHHHHHHHHHHcCCEEEe
Confidence 36899999999999999873 4456888999999999984
No 167
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=51.61 E-value=37 Score=30.37 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCcEEEEEcCc----EEEEEECCCCCcccceEEccc----CCc-eEEEEEeCCCCCcCCccccCCCccccccccccCCCC
Q 003390 726 GDRVIVFERGN----LVFVFNFHWNSSYSDYRVGCL----KPG-KYKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQP 796 (823)
Q Consensus 726 ~~~Vlaf~R~~----llvv~Nf~~~~~~~~~~l~v~----~~g-~~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~ 796 (823)
++..+||.|+. +|+|+|...+.+...|.+.++ .+| .+.+||+..... -+..
T Consensus 5 d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~t--------------------v~~~ 64 (91)
T PF09260_consen 5 DDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYT--------------------VDSN 64 (91)
T ss_dssp ETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE----------------------TT
T ss_pred CCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEE--------------------ECCC
Confidence 36799999976 888887764324556777665 233 466666532111 1223
Q ss_pred eEEEEEEcCceEEEEEEc
Q 003390 797 HSFLVYAPSRTAVVYALA 814 (823)
Q Consensus 797 ~~i~l~lp~~s~~V~~~~ 814 (823)
+.+.+.+-.+.=.||-+.
T Consensus 65 G~l~v~m~~G~P~Vl~P~ 82 (91)
T PF09260_consen 65 GTLTVPMSNGEPRVLYPA 82 (91)
T ss_dssp S-EEEEESTT--EEEEEC
T ss_pred CEEEEEEcCCceEEEEEH
Confidence 457788887777787765
No 168
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=51.15 E-value=1.3e+02 Score=32.01 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=35.4
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
+.++.++++||+.|+|.+...+. ...+.++ +.++++++.+.+.+.||.|..
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~-----~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDE-----RLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCccc-----ccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 68999999999999995321110 0011111 457889999999999999863
No 169
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=50.61 E-value=24 Score=42.14 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=41.9
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 395 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 395 (823)
++.|..+|++|+|+|+--=++- - |-=.+-. -.|...-||.+||..||+.|+-|||-+=+
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn-~----Hep~~g~-----y~FsG~~DlvkFikl~~~~GLyv~LRiGP 110 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWN-L----HEPSPGK-----YDFSGRYDLVKFIKLIHKAGLYVILRIGP 110 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecc-c----ccCCCCc-----ccccchhHHHHHHHHHHHCCeEEEecCCC
Confidence 4688999999999998543221 0 1000111 14667889999999999999999998653
No 170
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.58 E-value=75 Score=34.98 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCC---HHHHHHHHHHH
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGS---WEVLRFLLSNA 448 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~---~~V~~~l~~~l 448 (823)
.+.+|+|++++|+.|-++++-+ +|.+....... .+..+ +.............+ -.... .++.+.+.+++
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~~~~---~~~~~--~~~s~~~~~~~~~~~-~~mt~~ei~~~i~~~~~aA 147 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQPNL---TGGPP--PAPSAIPSPGGGEPP-REMTKEEIEQIIEDFAAAA 147 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHh--hCCCcCCCCcC---CCCCc--cCCCCCCCCCCCCCC-CcCCHHHHHHHHHHHHHHH
Confidence 6899999999999999998776 56655421111 11000 000000000000000 01111 23444555566
Q ss_pred HHHHHhcCceEEEEcccc
Q 003390 449 RWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 449 ~~Wl~e~gvDGfR~D~v~ 466 (823)
+...+ .|+||+-+.++.
T Consensus 148 ~~a~~-aGfDgveih~~~ 164 (327)
T cd02803 148 RRAKE-AGFDGVEIHGAH 164 (327)
T ss_pred HHHHH-cCCCEEEEcchh
Confidence 66666 899999999874
No 171
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=49.42 E-value=1.7e+02 Score=32.99 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
..+.||+|++++|++|-++++-+. |.+..
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~--H~G~~ 109 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELW--HGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecc--cCCCC
Confidence 368999999999999999999876 66553
No 172
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=49.16 E-value=1.6e+02 Score=32.92 Aligned_cols=28 Identities=14% Similarity=0.449 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
.+.||+|++++|+.|-++++-+ +|.+..
T Consensus 76 i~~~~~l~~~vh~~g~~~~~Ql--~H~G~~ 103 (343)
T cd04734 76 IPGFRRLAEAVHAHGAVIMIQL--THLGRR 103 (343)
T ss_pred HHHHHHHHHHHHhcCCeEEEec--cCCCcC
Confidence 5789999999999999999965 455543
No 173
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=49.16 E-value=44 Score=36.89 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEcc
Q 003390 436 GSWEVLRFLLSNARWWLEEYKFDGFRFDG 464 (823)
Q Consensus 436 ~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~ 464 (823)
.+++.|+.+++++.-|++++++||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 46888999999999999999999999984
No 174
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.82 E-value=1.5e+02 Score=33.35 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHH---HHHHHHHHH
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWE---VLRFLLSNA 448 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~---V~~~l~~~l 448 (823)
.+.||+|++++|++|=++++-+. |.+.........+.+..+ ...... ....+..+ --....+ +.+.+..++
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL~--H~Gr~~~~~~~~~~~~~~--~~ps~~-~~~~~~~p-~~mt~~eI~~ii~~f~~AA 150 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQLW--HVGAMRKLGTPPFPDVPP--LSPSGL-VGPGKPVG-REMTEADIDDVIAAFARAA 150 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCCcCcccCccCCCce--eCCCCC-CcCCCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 68899999999999999999875 555432110000111100 000000 00000000 0111222 333333445
Q ss_pred HHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC-CCE
Q 003390 449 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY-PEA 513 (823)
Q Consensus 449 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~-p~~ 513 (823)
+.-.+ .|+||+-+-++...+-..+ +.+.++..-++| |+.. .....|+.++.+.|++.. |++
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~qF-LSp~~N~RtDeY-GGsl-enR~Rf~~eii~air~~vG~d~ 212 (361)
T cd04747 151 ADARR-LGFDGIELHGAHGYLIDQF-FWAGTNRRADGY-GGSL-AARSRFAAEVVKAIRAAVGPDF 212 (361)
T ss_pred HHHHH-cCCCEEEEecccchHHHHh-cCCCCCCCCCCC-CCCH-HHHHHHHHHHHHHHHHHcCCCC
Confidence 45445 8999999999864321100 000111112233 3321 224568888888888764 443
No 175
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=48.52 E-value=45 Score=36.79 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccCh-hHHHHHHHHHHhhhcc
Q 003390 436 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDV-DAVVYLMLVNDMIHGL 509 (823)
Q Consensus 436 ~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~-~~~~fl~~~~~~v~~~ 509 (823)
.+++.|+.+++++.-|++++++||+-+|--. .. . .+ .+. .-..|+++++..+++.
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~-~~------------~----~~--~d~~~~~~ll~~lr~~l~~~ 142 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEY-PG------------A----RG--DDRENYTALLKELREALDKE 142 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcC-CC------------C----Cc--cHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999421 10 0 00 122 2347899999888764
No 176
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=47.59 E-value=39 Score=29.79 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=23.0
Q ss_pred CcCeEEEEeecCCCCCc-ccccccCC----CceEEEEeC
Q 003390 199 GAKSASLIGDFNNWNPN-ADIMTQNE----FGVWEIFLP 232 (823)
Q Consensus 199 ~A~~V~L~gdfN~w~~~-~~~m~r~~----~GvWei~ip 232 (823)
.|.+|.|.+-||+|... ...|.+.. .|.|+++|.
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~ 55 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVD 55 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEE
Confidence 58899999989999765 46777654 799999993
No 177
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=47.02 E-value=41 Score=37.72 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhccCCCEE
Q 003390 436 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLYPEAV 514 (823)
Q Consensus 436 ~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~~p~~~ 514 (823)
.++..|+.+++++.-|++++++||+-+|--. . +.. .+...+.+ -..|++++++.+++..++.+
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~-p------------~~~---~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ 155 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEY-P------------GQR---GGPPEDKENFVTLLKELREAFEPEAPRLL 155 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeec-c------------ccC---CCCHHHHHHHHHHHHHHHHHHHhhCcCeE
Confidence 4678889999999999999999999998421 0 000 00111222 24788999999887644433
No 178
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=46.57 E-value=2.9e+02 Score=30.65 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=40.1
Q ss_pred hhhhhhHHH---cCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 327 DDVLPRIKR---LGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 327 ~~~L~yLk~---LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
++.+.|.++ -|+..|..-.+.-++....+.+++.-+. . .-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~---d--~~~~~~~~l~~~vh~~G~~~~~QL~--H~G~~ 103 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWN---D--EQIEALKRIVDFIHSQGAKIGIQLA--HAGRK 103 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecC---H--HHHHHHHHHHHHHHhcCCcEEEEcc--CCCcC
Confidence 345555544 4777776555544443211112221100 0 1368899999999999999999876 45443
No 179
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=44.35 E-value=54 Score=35.81 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhH-HHHHHHHHHhhhc
Q 003390 436 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDA-VVYLMLVNDMIHG 508 (823)
Q Consensus 436 ~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~-~~fl~~~~~~v~~ 508 (823)
.+++.|+.+++++.-+++++|+||+-+|=- |. +...+.+. ..|++++++.+++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE-----------------~P---~~~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWE-----------------FP---SSQVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeeccc-----------------CC---CChhHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999832 00 01122222 4788999998874
No 180
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=43.63 E-value=49 Score=36.39 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhccC
Q 003390 436 GSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLY 510 (823)
Q Consensus 436 ~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~~ 510 (823)
.+++.|+.+++++.-+++++|+||+-+|.=.... ..+...+.+ -..|++++++.+++..
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~----------------~~~~~~d~~~~~~~l~el~~~l~~~~ 147 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLA----------------AYGVPDKRKELIQLVIHLGETLHSAN 147 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhc----------------ccCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 5688899999999999999999999998311110 000001222 2478999999887653
No 181
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=43.37 E-value=2.4e+02 Score=31.46 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=73.8
Q ss_pred HHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCC
Q 003390 333 IKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGT 412 (823)
Q Consensus 333 Lk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~ 412 (823)
..+-|+..|..-.+.-++....+.+++.- + +. .-...||+|++++|+.|-++++-+. |.+.... ..+.
T Consensus 46 rA~gG~GlIi~~~~~v~~~~~~~~~~~~~-~--~d--~~i~~~r~l~d~vh~~G~~i~~QL~--H~G~~~~-----~~~~ 113 (337)
T PRK13523 46 RAAGQVGLVIVEATAVLPEGRISDKDLGI-W--DD--EHIEGLHKLVTFIHDHGAKAAIQLA--HAGRKAE-----LEGD 113 (337)
T ss_pred HHcCCCeEEEECCeEECccccCCCCceec-C--CH--HHHHHHHHHHHHHHhcCCEEEEEcc--CCCCCCC-----CCCC
Confidence 34467888866655544432111111110 0 11 1268899999999999999999875 4544321 1110
Q ss_pred CCCccccCCCCCcccCCCCCCCCCCHHHH---HHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCc
Q 003390 413 DGHYFHSGSRGYHWMWDSRLFNYGSWEVL---RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGF 489 (823)
Q Consensus 413 ~~~yf~~~~~g~~~~w~~~~ln~~~~~V~---~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~ 489 (823)
. ........ .......-.....++. +-+..+++.-.+ .|+||.-+-+++..+-. .+-...++.-.+.||+
T Consensus 114 --~-~~ps~~~~-~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~-aGfDgVeih~ahGyLl~--qFlSp~~N~RtD~yGG 186 (337)
T PRK13523 114 --I-VAPSAIPF-DEKSKTPVEMTKEQIKETVLAFKQAAVRAKE-AGFDVIEIHGAHGYLIN--EFLSPLSNKRTDEYGG 186 (337)
T ss_pred --c-cCCCCCCC-CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccchHHH--HhcCCccCCcCCCCCC
Confidence 0 00000000 0000000011222333 333344444444 89999999988532211 0000111112223344
Q ss_pred ccChhHHHHHHHHHHhhhccC
Q 003390 490 ATDVDAVVYLMLVNDMIHGLY 510 (823)
Q Consensus 490 ~~d~~~~~fl~~~~~~v~~~~ 510 (823)
. -.....|+.++.+.|++..
T Consensus 187 s-lenR~Rf~~eii~~ir~~~ 206 (337)
T PRK13523 187 S-PENRYRFLREIIDAVKEVW 206 (337)
T ss_pred C-HHHHHHHHHHHHHHHHHhc
Confidence 3 2234677778877777653
No 182
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=43.21 E-value=54 Score=36.02 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhccC----C
Q 003390 437 SWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGLY----P 511 (823)
Q Consensus 437 ~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~~----p 511 (823)
+++-|+.+++++.-|+++||+||+-||-=..... +...+.+ -..|+++++..+++.. .
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~-----------------~~~~~~~~~~~~l~~L~~~l~~~~~~~~~ 158 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSS-----------------GDPQDKDNYTAFLKELRKALKRANRSGKG 158 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTST-----------------SSTTHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeecccc-----------------ccchhhhhhhhhhhhhhhhhcccccccce
Confidence 4677899999999999999999999985321100 0001222 2478999998888752 3
Q ss_pred CEEEEE
Q 003390 512 EAVSIG 517 (823)
Q Consensus 512 ~~~~ig 517 (823)
-.+.++
T Consensus 159 ~~ls~a 164 (343)
T PF00704_consen 159 YILSVA 164 (343)
T ss_dssp SEEEEE
T ss_pred eEEeec
Confidence 455555
No 183
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=43.05 E-value=80 Score=34.27 Aligned_cols=131 Identities=21% Similarity=0.314 Sum_probs=76.9
Q ss_pred HhhHhhhhhhHHHcCCCEEEECCcccCC-CCCCCCCccccccCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 323 ANFRDDVLPRIKRLGYNAVQIMAVQEHS-YYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 323 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~-~~~~~GY~~~~~~a~~~~~Gt---~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
++..++++..||+.|+|++-+ +.. .++.--|...|-+ ....++ .-|.+.+|++|+++||.+|.-+|.=--
T Consensus 76 kk~~de~fk~ikdn~~Na~Vi----D~Kdd~G~lty~s~d~~--~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVI----DVKDDYGELTYPSSDEI--NKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEE----EecCCCccEeccccchh--hhhhhccccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 345568999999999999843 322 2233345444421 122222 467889999999999999999985211
Q ss_pred CCCc-c--ccccCCC-CCCCCccccC-----CCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcccc
Q 003390 399 SNNV-L--DGLNMFD-GTDGHYFHSG-----SRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDGVT 466 (823)
Q Consensus 399 ~~~~-~--~~~~~fd-g~~~~yf~~~-----~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~ 466 (823)
..-. . .-+..+. |.+..-|..+ ..+.|| .+--++.+++|=+.+++--++ ||||-+.||-+.
T Consensus 150 ~~l~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehW------Vd~y~~~~WeYNvtIAKEa~~-fGfdEiQFDYIR 219 (400)
T COG1306 150 TILAKENPFKIAVYKDGKPWKAFTNGALRKESDGEHW------VDAYDKNLWEYNVTIAKEAAK-FGFDEIQFDYIR 219 (400)
T ss_pred eeEEeecCceEEEEcCCCcchhhhcccccccccceee------ecccchhhhhhhHHHHHHHHH-cCccceeeeEEE
Confidence 1000 0 0000111 1111111111 122333 244568899999999998888 999999999774
No 184
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=42.61 E-value=2.2e+02 Score=32.26 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccC-CCCCCCCccccCCCCCcccCCCCCCCCCCH---HHHHHHHHH
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNM-FDGTDGHYFHSGSRGYHWMWDSRLFNYGSW---EVLRFLLSN 447 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~-fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~---~V~~~l~~~ 447 (823)
.+.||++++++|+.|=++++-+. |.+......... ..-..+.-.... .. ....+ =-.... ++.+-+..+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~--H~Gr~~~~~~~~~~~~vapS~~~~~--~~--~~~~p-r~mt~~eI~~ii~~f~~A 154 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLW--HAGRKARASHPWLPSAVAPSAIPAP--GG--RRATP-RELTEEEIEEVIEDFARA 154 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEec--cCcccccccccCCCcccCCCccccc--cC--CCCCC-ccCCHHHHHHHHHHHHHH
Confidence 67899999999999999999875 555321000000 000001000000 00 00000 001122 233333334
Q ss_pred HHHHHHhcCceEEEEcccccccccccCccccccCCc-ccccCcccChhHHHHHHHHHHhhhccCCC
Q 003390 448 ARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNY-SEYFGFATDVDAVVYLMLVNDMIHGLYPE 512 (823)
Q Consensus 448 l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~-~~~~g~~~d~~~~~fl~~~~~~v~~~~p~ 512 (823)
++.=. +-|+||.-+-+++..+-.. +-...++.- ++|.|.-+| .+.|+.++.+.|++.-+.
T Consensus 155 A~rA~-~AGFDgVEIH~AhGYLi~q--Flsp~tN~RtD~YGGSlEN--R~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 155 ARRAK-EAGFDGVEIHGAHGYLLSQ--FLSPLTNKRTDEYGGSLEN--RARFLLEVVDAVREAVGA 215 (363)
T ss_pred HHHHH-HcCCCEEEEeeccchHHHH--hcCCccCCCCCccCCcHHH--HHHHHHHHHHHHHHHhCC
Confidence 44444 4899999999997543221 111112222 233333232 456777777777765443
No 185
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=41.81 E-value=37 Score=37.49 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=43.4
Q ss_pred hhhhhhHHHcCCC-EEEECCcccCCCCCCCCCccccc-cCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 327 DDVLPRIKRLGYN-AVQIMAVQEHSYYASFGYHVTNF-FAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 327 ~~~L~yLk~LGvt-~I~L~Pi~e~~~~~~~GY~~~~~-~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
++.|..|+++|++ .|.|-. . +.. ..-. ..++-.+ |.+++.+.++.+|++||.|.+++.++
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~-E-S~~-------d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL-E-TAN-------DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec-C-cCC-------HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4789999999998 576532 1 111 1111 1344444 88999999999999999999999875
No 186
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=41.65 E-value=48 Score=39.02 Aligned_cols=63 Identities=22% Similarity=0.322 Sum_probs=46.5
Q ss_pred hHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEecccc
Q 003390 325 FRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSH 397 (823)
Q Consensus 325 ~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI-~VIlDvV~NH 397 (823)
+.+++|..|+++|++.|.|.| +.. +..-.-.+ .|-.|.+++.+.++.|++.|+ .|-+|+.++.
T Consensus 267 it~e~L~~Lk~~Gv~RISIGv-QS~--------~d~vLk~i-gR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GL 330 (488)
T PRK08207 267 ITEEKLEVLKKYGVDRISINP-QTM--------NDETLKAI-GRHHTVEDIIEKFHLAREMGFDNINMDLIIGL 330 (488)
T ss_pred CCHHHHHHHHhcCCCeEEEcC-CcC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 345799999999999998655 211 11112233 455789999999999999999 7889999753
No 187
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.54 E-value=2.7e+02 Score=31.20 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCH---HHHHHHHHHH
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSW---EVLRFLLSNA 448 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~---~V~~~l~~~l 448 (823)
.+.+|+|++++|++|-++++-+ +|.+........ .+.. . +....-.........---.... ++.+.+..++
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL--~h~G~~~~~~~~--~~~~-~-~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQI--FHAGRMANPALV--PGGD-V-VSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEe--cCCCCCCCcccc--CCCc-e-ecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999765 455543211100 0100 0 0000000000000000011122 3444444555
Q ss_pred HHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChhHHHHHHHHHHhhhccC
Q 003390 449 RWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVDAVVYLMLVNDMIHGLY 510 (823)
Q Consensus 449 ~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~~~~fl~~~~~~v~~~~ 510 (823)
+.-.+ .|+||+-+.+++..+-..+. .+.++..-++ ||+. -.....|+.++.+.|++.-
T Consensus 151 ~~a~~-aGfDgVeih~ahGyLl~qFl-sp~~N~R~D~-yGGs-lenR~r~~~eii~~vr~~v 208 (353)
T cd04735 151 RRAIE-AGFDGVEIHGANGYLIQQFF-SPHSNRRTDE-WGGS-LENRMRFPLAVVKAVQEVI 208 (353)
T ss_pred HHHHH-cCCCEEEEccccchHHHHhc-CCccCCCCcc-cCCc-HHHHHHHHHHHHHHHHHHh
Confidence 55444 89999999987533211100 0011111223 3433 2244677888887777754
No 188
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=41.39 E-value=81 Score=28.55 Aligned_cols=60 Identities=20% Similarity=0.493 Sum_probs=38.9
Q ss_pred EEEEEecCCc--CeEEEEeec---CCCCCc-ccccccC----CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003390 191 ITYREWAPGA--KSASLIGDF---NNWNPN-ADIMTQN----EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256 (823)
Q Consensus 191 v~fr~WAP~A--~~V~L~gdf---N~w~~~-~~~m~r~----~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~ 256 (823)
++|++=+++. +.|.|+|+- .+|++. +.+|... +.++|++.+.-.. +. ...|||.+...++
T Consensus 9 V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~-~~-----~veYKy~~~~~~~ 78 (106)
T cd05811 9 VTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPA-GT-----SFEYKFIRKESDG 78 (106)
T ss_pred EEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 6777755543 678999874 579874 5788653 3589998876432 21 3578887654443
No 189
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=40.97 E-value=65 Score=33.47 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=40.9
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCC--CC--CCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYA--SF--GYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~--~~--GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
.....|+++|+..|+|+|.+...... .. -|...+.-. =+.++++++.+.+.++|+.|++
T Consensus 149 ~ia~~l~~l~~~~~~llpyh~~g~~Ky~~lg~~y~~~~~~~-----~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 149 QALDVLIPLGIKQIHLLPFHQYGEPKYRLLGKTWSMKEVPA-----PSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHcCCceEEEecCCccchhHHHHcCCcCccCCCCC-----cCHHHHHHHHHHHHHcCCeEEe
Confidence 56778889999999999987643211 01 132222212 2578999999999999999974
No 190
>PLN02411 12-oxophytodienoate reductase
Probab=40.17 E-value=4.5e+02 Score=29.99 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
.+.+|+|++++|++|-++++-+. |.+..
T Consensus 86 i~~~~~l~~avH~~G~~i~~QL~--H~Gr~ 113 (391)
T PLN02411 86 VEAWKKVVDAVHAKGSIIFCQLW--HVGRA 113 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEEecc--CCCCC
Confidence 57899999999999999999876 55543
No 191
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=39.77 E-value=57 Score=35.59 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccChh-HHHHHHHHHHhhhcc
Q 003390 435 YGSWEVLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATDVD-AVVYLMLVNDMIHGL 509 (823)
Q Consensus 435 ~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d~~-~~~fl~~~~~~v~~~ 509 (823)
..+++.|+.+++++..+++++|+||+-+|--. +. ..+.+ -..|++++++.+++.
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~-~~--------------------~~d~~~~~~fl~eL~~~l~~~ 137 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFEE-LP--------------------ADDLPKYVAFLSELRRRLPAQ 137 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecCC-CC--------------------hhHHHHHHHHHHHHHHHhhhc
Confidence 35788899999999999999999999999631 10 01222 247899999999875
No 192
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=39.67 E-value=99 Score=27.76 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=36.3
Q ss_pred EEEEEecCCc--CeEEEEee---cCCCCCc-ccccccC---CCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003390 191 ITYREWAPGA--KSASLIGD---FNNWNPN-ADIMTQN---EFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 254 (823)
Q Consensus 191 v~fr~WAP~A--~~V~L~gd---fN~w~~~-~~~m~r~---~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~ 254 (823)
++|++=+.+. +++.|+|+ ..+|+.. +.+|... +...|++.|.... + ....|||.+...
T Consensus 2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~-----~~veYky~v~~~ 68 (101)
T cd05815 2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-G-----FSSEYNYYVVDD 68 (101)
T ss_pred EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-C-----CcEEEEEEEEcC
Confidence 4566655444 68888885 4679864 5688532 3448988876432 2 135888887543
No 193
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=39.09 E-value=62 Score=34.99 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=44.3
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
++.+..||++|++.|.+. +| .. +.-|-.+.+. .+.++..+.++.+|++||.|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-------~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-------QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-------HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 478999999999999886 33 11 1122233333 5889999999999999999988887754
No 194
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=38.98 E-value=53 Score=36.89 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=46.5
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 400 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~~ 400 (823)
++.|..|+++|+|.|.|- |... +..-+-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++.-..
T Consensus 100 ~e~l~~l~~~Gv~risiG-vqS~--------~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-VQSF--------RDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-cccC--------ChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 468999999999999753 2221 11222233 4667899999999999999995 789999865443
No 195
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=38.94 E-value=5e+02 Score=28.19 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=35.9
Q ss_pred hhHHHcCCCEEEECCcccCCCCCCCCCccccccCcC--CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 003390 331 PRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPS--SRCGTPDDLKSLIDKAHELGLLVLMD 392 (823)
Q Consensus 331 ~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~--~~~Gt~edlk~LV~~aH~~GI~VIlD 392 (823)
.|..+-.|+.|-|.=+..++. -|+-..||-... ..++.-.+|.+-|+.|+++|+||||=
T Consensus 18 ~~C~~~~~dii~i~Fl~~~~~---~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 18 EYCDTGNYDIVNISFLNVFGS---GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred HHhCCCCccEEEEEeEcccCC---CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 444556688887665554443 233233332211 11113468999999999999999995
No 196
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=38.02 E-value=29 Score=37.89 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDI 393 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDv 393 (823)
++++++++.+-||++||.|.||-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 47999999999999999999993
No 197
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=37.48 E-value=3.5e+02 Score=30.26 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
-.+.||+|++++|+.|-++++-+. |.+..
T Consensus 75 ~i~~~~~l~~~vh~~g~~~~~QL~--h~G~~ 103 (353)
T cd02930 75 QAAGHRLITDAVHAEGGKIALQIL--HAGRY 103 (353)
T ss_pred HHHHHHHHHHHHHHcCCEEEeecc--CCCCC
Confidence 378999999999999999999876 55543
No 198
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=36.10 E-value=44 Score=37.72 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=46.8
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 400 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~~ 400 (823)
.+++|..|+++|+|.|.| +|+... ..-.-.+ .|-.+.++..+.++.+++.|+. |-+|++++.-..
T Consensus 107 ~~e~l~~l~~~G~~rvsl-GvQS~~--------~~~L~~l-~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSL-GMQSAA--------PHVLAVL-DRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 347999999999999975 333221 1111122 3556889999999999999999 999999876443
No 199
>PRK01060 endonuclease IV; Provisional
Probab=35.94 E-value=72 Score=34.14 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=37.1
Q ss_pred hhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 003390 324 NFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389 (823)
Q Consensus 324 ~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~V 389 (823)
++. +.|+.++++|+++|+|.+--.+ .+. +..-+++++++|.+.+.+.||++
T Consensus 13 ~~~-~~l~~~~~~G~d~vEl~~~~p~------~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLE-GAVAEAAEIGANAFMIFTGNPQ------QWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CHH-HHHHHHHHcCCCEEEEECCCCC------CCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 344 6899999999999999653211 111 21237888999999999999985
No 200
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=35.86 E-value=44 Score=38.60 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=45.6
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEE-EEecccccCCC
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL-MDIVHSHASNN 401 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VI-lDvV~NH~~~~ 401 (823)
.++.|..|+++|++.|.|- |.... ..-...+. |--+.++..+.|+.||+.||.+| +|+.++.-..+
T Consensus 140 t~e~l~~l~~~G~~rvslG-vQS~~--------~~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt 206 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIG-VQSFH--------DSELHALH-RPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQT 206 (430)
T ss_pred CHHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3579999999999999753 32211 11111222 22378999999999999999865 99998766544
No 201
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=35.24 E-value=78 Score=32.47 Aligned_cols=43 Identities=12% Similarity=0.313 Sum_probs=29.8
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV 389 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~V 389 (823)
+.-+..|++||.+.|=++|+- -.-..+||+.+.++|-++||.+
T Consensus 138 etAiaml~dmG~~SiKffPm~--------------------Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 138 ETAIAMLKDMGGSSIKFFPMG--------------------GLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHTT--EEEE---T--------------------TTTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHcCCCeeeEeecC--------------------CcccHHHHHHHHHHHHHcCcee
Confidence 367899999999999988873 1234789999999999998876
No 202
>PRK07094 biotin synthase; Provisional
Probab=35.20 E-value=53 Score=36.13 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=44.9
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
++.+..|++.|++.|.+ .+- +. +..-|-.+.+. .+.++..+.++.+|+.||.|-.++++.+-
T Consensus 129 ~e~l~~Lk~aG~~~v~~-glE-s~-------~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlp 190 (323)
T PRK07094 129 YEEYKAWKEAGADRYLL-RHE-TA-------DKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLP 190 (323)
T ss_pred HHHHHHHHHcCCCEEEe-ccc-cC-------CHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECC
Confidence 46899999999999974 322 11 12223334443 67899999999999999999888887643
No 203
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=34.92 E-value=4.4e+02 Score=29.35 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 372 PDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 372 ~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
.+.||+|++++|++|-++++-+. |.+..
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL~--H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQLW--HVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcc--cCccC
Confidence 57899999999999999999765 66543
No 204
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=34.54 E-value=3.4e+02 Score=29.49 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCEEEEEecccccCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHH
Q 003390 373 DDLKSLIDKAHELGLLVLMDIVHSHASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWL 452 (823)
Q Consensus 373 edlk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl 452 (823)
+.++++|+.|+++|+.|..-+.....+. +++. .+ -+++++.++-..
T Consensus 120 ~~~~~~v~~ak~~g~~v~~~i~~~~~~~--------~~~~-----------------------~~---~~~~~~~~~~~~ 165 (287)
T PRK05692 120 ERFEPVAEAAKQAGVRVRGYVSCVLGCP--------YEGE-----------------------VP---PEAVADVAERLF 165 (287)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEEecCC--------CCCC-----------------------CC---HHHHHHHHHHHH
Confidence 4588888888888888876655421111 1110 01 268888888888
Q ss_pred HhcCceEEEE-cccc
Q 003390 453 EEYKFDGFRF-DGVT 466 (823)
Q Consensus 453 ~e~gvDGfR~-D~v~ 466 (823)
+ .|+|.+++ |.+.
T Consensus 166 ~-~G~d~i~l~DT~G 179 (287)
T PRK05692 166 A-LGCYEISLGDTIG 179 (287)
T ss_pred H-cCCcEEEeccccC
Confidence 7 89998887 5443
No 205
>PRK06256 biotin synthase; Validated
Probab=33.85 E-value=51 Score=36.54 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=44.8
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
.++.+..||++|++.|.+. +|+ . ..-|-.+.+. .+.++..+.++.||+.||.|...+++.+
T Consensus 151 ~~e~l~~LkeaG~~~v~~~--lEt-s-------~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHN--LET-S-------RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred CHHHHHHHHHhCCCEEecC--Ccc-C-------HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 3478999999999999773 232 1 1223334443 4789999999999999999988888765
No 206
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=33.41 E-value=51 Score=37.03 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=45.3
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 399 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~ 399 (823)
+++|..|+++|+|.|.| +|+.... .-.-.+ .|-.+.++..+.|+.|++.|+. |-+|+.++.-+
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d--------~vL~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNN--------NILKQL-NRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCH--------HHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 47999999999999864 4443211 111112 3446889999999999999997 88999986543
No 207
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=33.19 E-value=1.9e+02 Score=33.96 Aligned_cols=104 Identities=12% Similarity=0.256 Sum_probs=62.0
Q ss_pred CCCCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 318 IINTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 318 ~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
.+..|.-.. +-+..+++||+|+.-+.=-+.--. . -|.. -. +.-...+=.++||++|+++||.+|+.+. |
T Consensus 66 A~D~Yhry~-eDi~l~~~lG~~~yR~si~WsRi~-P-~g~~----~~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--H 134 (474)
T PRK09852 66 AIDFYHRYK-EDIALMAEMGFKVFRTSIAWSRLF-P-QGDE----LT--PNQQGIAFYRSVFEECKKYGIEPLVTLC--H 134 (474)
T ss_pred cCchhhhhH-HHHHHHHHcCCCeEEeeceeeeee-e-CCCC----CC--CCHHHHHHHHHHHHHHHHcCCEEEEEee--C
Confidence 345566666 689999999999987643221100 0 0100 00 1112356688999999999999999876 3
Q ss_pred cCCCccccccCCCCCCCCccccCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003390 398 ASNNVLDGLNMFDGTDGHYFHSGSRGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYK 456 (823)
Q Consensus 398 ~~~~~~~~~~~fdg~~~~yf~~~~~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~g 456 (823)
..- |.++..... -|.|+++.+++.+-++..+++||
T Consensus 135 ~~~-------------P~~l~~~~G-----------GW~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 135 FDV-------------PMHLVTEYG-----------SWRNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred CCC-------------CHHHHHhcC-----------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 311 223221101 13457777888877777777665
No 208
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.04 E-value=4.4e+02 Score=32.94 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHc-CCEEEEEecccccCCC
Q 003390 372 PDDLKSLIDKAHEL-GLLVLMDIVHSHASNN 401 (823)
Q Consensus 372 ~edlk~LV~~aH~~-GI~VIlDvV~NH~~~~ 401 (823)
.+.+|++++++|+. |-+|++-+ +|.+..
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~ 502 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRK 502 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCccc
Confidence 57899999999999 69998886 666654
No 209
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=31.86 E-value=1.9e+02 Score=26.16 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=39.1
Q ss_pred EEEEEecC----CcCeEEEEee---cCCCCCcc---c-ccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003390 191 ITYREWAP----GAKSASLIGD---FNNWNPNA---D-IMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256 (823)
Q Consensus 191 v~fr~WAP----~A~~V~L~gd---fN~w~~~~---~-~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~ 256 (823)
++|+|=.. --+.++|+|+ +.+|+... . +|.......|++.++.. .|. -..|||.+...++
T Consensus 5 v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp-~~~-----~veyK~v~~~~~g 75 (103)
T cd05820 5 VIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVP-AGT-----YIEFKFLKAPADG 75 (103)
T ss_pred EEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcC-CCC-----cEEEEEEEECCCC
Confidence 67777643 2368899986 46898642 2 67666778999888632 222 3578887755443
No 210
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.70 E-value=88 Score=33.28 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=34.0
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 390 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VI 390 (823)
+.|+.++++||++|+|..-. +..| . +. .+..++++|.+.+.+.||+|.
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~-----------~~~~-~--~~-~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGR-----------PHAF-A--PD-LKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred HHHHHHHHcCCCEEEEccCC-----------cccc-c--cc-cCchHHHHHHHHHHHcCCeEE
Confidence 68999999999999984311 1111 1 11 134678889999999999974
No 211
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=31.65 E-value=73 Score=29.62 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=40.6
Q ss_pred EcCCcEEEEEecC--CcCeEEEE-eecCCC----CCccccccc----CCCceEEEEeCCCCCCCCCCCCCCEEEEEEeC
Q 003390 186 RSDTGITYREWAP--GAKSASLI-GDFNNW----NPNADIMTQ----NEFGVWEIFLPNNADGSPPIPHGSRVKIHMDT 253 (823)
Q Consensus 186 ~~~~gv~fr~WAP--~A~~V~L~-gdfN~w----~~~~~~m~r----~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~ 253 (823)
...+-+++|+++. .+++|.|+ +|-.+| .....+|++ .....|+++|+.... ..+|.|.+.+
T Consensus 18 ~~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-------r~~Y~F~l~~ 89 (120)
T PF02903_consen 18 YDGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-------RLRYYFELED 89 (120)
T ss_dssp ECTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-------EEEEEEEEEE
T ss_pred cCCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-------eEEEEEEEEe
Confidence 3556688999976 56899986 565544 223457875 457899999985422 2478888877
No 212
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=31.25 E-value=76 Score=35.54 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=45.6
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHAS 399 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~ 399 (823)
+++|..|+++|||.|.| .|+... ..-.-.+ .|-.+.++..+.|+.+++.|+. |-+|+.++.-+
T Consensus 98 ~e~l~~l~~~GvnRiSi-GvQS~~--------~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISF-GVQSFN--------EDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 47999999999999973 444321 1111223 4556789999999999999996 66999986543
No 213
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=30.47 E-value=74 Score=37.02 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=46.6
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEecccccCCC
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGL-LVLMDIVHSHASNN 401 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI-~VIlDvV~NH~~~~ 401 (823)
.++.|..|+++|++.|.|- |... +..-.-.+ .+-.+.++..+.|+.+++.|| .|-+|+.++.-+.+
T Consensus 150 t~e~l~~l~~aG~~risiG-vqS~--------~~~~L~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt 216 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLG-VQDF--------DPEVQKAV-NRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQT 216 (453)
T ss_pred CHHHHHHHHHcCCCEEEEC-CCCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC
Confidence 3579999999999999753 2211 11111122 344688999999999999999 89999988755443
No 214
>PRK15447 putative protease; Provisional
Probab=30.33 E-value=1e+02 Score=33.81 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=37.2
Q ss_pred CCHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 320 NTYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 320 G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
|++..|. -.|++.|+++|+|--. .++.- . .| +.+++++.|+.||++|.+|.+
T Consensus 15 ~~~~~~~----~~~~~~gaDaVY~g~~-~~~~R-------~-------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 15 ETVRDFY----QRAADSPVDIVYLGET-VCSKR-------R-------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred CCHHHHH----HHHHcCCCCEEEECCc-cCCCc-------c-------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 5555444 4688899999998721 11110 0 12 779999999999999999988
No 215
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=29.39 E-value=73 Score=35.99 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=45.0
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 400 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~~ 400 (823)
++.|..|+++|+|.|.|- |.... ..-+-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 100 ~e~l~~l~~~G~~rvsiG-vqS~~--------~~~l~~l-~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLG-VQTFN--------DELLKKI-GRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 478999999999998753 32211 1111122 3556789999999999999998 678998765443
No 216
>PLN03231 putative alpha-galactosidase; Provisional
Probab=28.73 E-value=8.9e+02 Score=27.34 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=74.6
Q ss_pred HhhHhhhhhhHHHcCCCEEEECCcccCCC--------CCCCCCc---cccccCcCC-CCCC---HHHHHHHHHHHHHcCC
Q 003390 323 ANFRDDVLPRIKRLGYNAVQIMAVQEHSY--------YASFGYH---VTNFFAPSS-RCGT---PDDLKSLIDKAHELGL 387 (823)
Q Consensus 323 ~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~--------~~~~GY~---~~~~~a~~~-~~Gt---~edlk~LV~~aH~~GI 387 (823)
+..++-.-..||++|++.|-|==-+-.+. ..+.+|. ......++| +|=+ -.-||.|.+.+|++|+
T Consensus 21 ~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GL 100 (357)
T PLN03231 21 LENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGL 100 (357)
T ss_pred HHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCc
Confidence 34443334589999999997743322110 0112331 222233332 2221 2369999999999999
Q ss_pred EEEEEeccc-ccCCCccccc--cCCCCCCCCccccCC---CCCcccCCC---CCCCCCCHHHHHHHHHHHHHHHHhcCce
Q 003390 388 LVLMDIVHS-HASNNVLDGL--NMFDGTDGHYFHSGS---RGYHWMWDS---RLFNYGSWEVLRFLLSNARWWLEEYKFD 458 (823)
Q Consensus 388 ~VIlDvV~N-H~~~~~~~~~--~~fdg~~~~yf~~~~---~g~~~~w~~---~~ln~~~~~V~~~l~~~l~~Wl~e~gvD 458 (823)
|.=+=.-.. +++... ... ..+.|.....+.... ......|.. .-+|.+++..++|+.+-++.+.+ -|||
T Consensus 101 KfGIY~~~G~~tca~~-~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~-WGVD 178 (357)
T PLN03231 101 KLGIHVMRGISTTAVK-KKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYAS-WGID 178 (357)
T ss_pred ceEEEecCCccchhcc-cCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHH-hCCC
Confidence 975533222 221110 000 011121111110000 001112222 24688999999999999999999 9999
Q ss_pred EEEEccc
Q 003390 459 GFRFDGV 465 (823)
Q Consensus 459 GfR~D~v 465 (823)
=+.+|..
T Consensus 179 ylK~D~c 185 (357)
T PLN03231 179 FIKHDCV 185 (357)
T ss_pred EEeeccc
Confidence 9999964
No 217
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=28.72 E-value=75 Score=36.94 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=45.8
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 400 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~~ 400 (823)
++.|..|+++|+|.|.|-. ... +..-.-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-QS~--------~~~vl~~l-~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-QDF--------DPQVQKAI-NRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 4799999999999997643 211 11111222 3457889999999999999997 889998765443
No 218
>PRK05660 HemN family oxidoreductase; Provisional
Probab=28.55 E-value=84 Score=35.60 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=46.3
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEE-EEEecccccCCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLV-LMDIVHSHASNN 401 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~V-IlDvV~NH~~~~ 401 (823)
.++|..|+++|+|.|.|-. .. .+..-+-.+ .+..+.++..+-|+.|++.|+.. -+|+.++.-..+
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-qS--------~~~~~L~~l-~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-QS--------FSEEKLKRL-GRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-Cc--------CCHHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 3689999999999997642 21 112222233 35578999999999999999976 499998765543
No 219
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.33 E-value=81 Score=35.54 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=45.5
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 400 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~~ 400 (823)
.++.|..|+++|+|.|.|- |.... ..-.-.+ .|-.+.++..+-|+.+++.|+. |-+|+.++.-+.
T Consensus 98 t~e~l~~l~~~G~~rvsiG-vqS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIG-LQAWQ--------NSLLKYL-GRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred CHHHHHHHHHcCCCEEEEE-CccCC--------HHHHHHc-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 3479999999999998753 33211 1111122 3555789999999999999997 779998765443
No 220
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=28.11 E-value=63 Score=31.71 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=38.4
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 394 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV 394 (823)
||.-.. +-.+-|+++||..- -.|-+..-||+.+.+++++++++|++||+=.-
T Consensus 14 D~~~mk-~Aa~~L~~fgi~ye---------------------~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgA 65 (162)
T COG0041 14 DWDTMK-KAAEILEEFGVPYE---------------------VRVVSAHRTPEKMFEYAEEAEERGVKVIIAGA 65 (162)
T ss_pred hHHHHH-HHHHHHHHcCCCeE---------------------EEEEeccCCHHHHHHHHHHHHHCCCeEEEecC
Confidence 454444 56778888888542 12334556999999999999999999998643
No 221
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=27.89 E-value=56 Score=37.06 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=40.4
Q ss_pred HHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 322 YANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGT---PDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt---~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
-..+. +-+..-+++|.+.==|+=+. | +..+|| +++|..|++=|.+++|.||.|=|+.-+
T Consensus 210 v~alE-~A~~~A~~~~~kVkGvlitN--P---------------sNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 210 VEALE-AALNQARKLGLKVKGVLITN--P---------------SNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred HHHHH-HHHHHHHHhCCceeEEEEeC--C---------------CCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence 33443 56777777887653322221 1 223454 899999999999999999999887654
No 222
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=27.89 E-value=2.2e+02 Score=25.14 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=34.9
Q ss_pred EEEEEecCC--cCeEEEEeec---CCCCCcccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCCCC
Q 003390 191 ITYREWAPG--AKSASLIGDF---NNWNPNADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTPSG 256 (823)
Q Consensus 191 v~fr~WAP~--A~~V~L~gdf---N~w~~~~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~~~ 256 (823)
++|++=... -+.+.|+|+- .+|++ +.+|.-. .+.|++.+.-.. +. ...|||.+...++
T Consensus 4 v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~-~~~l~~~-~~~W~~~~~l~~-~~-----~ieyKy~~~~~~~ 66 (92)
T cd05818 4 LQVRLDHQVKFGEHVAILGSTKELGSWKK-KVPMNWT-ENGWVCDLELDG-GE-----LVEYKFVIVKRDG 66 (92)
T ss_pred EEEEEEEEcCCCCEEEEEeChHHHCCCCC-CCccccC-CCCEEEEEEeCC-CC-----cEEEEEEEEcCCC
Confidence 345544333 3688999864 68984 4577654 467988775321 21 3578887765443
No 223
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=27.27 E-value=53 Score=37.67 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=31.5
Q ss_pred cccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003390 359 VTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIV 394 (823)
Q Consensus 359 ~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV 394 (823)
...+-.++...|+..+++++++.||++|+.|++|-+
T Consensus 165 lvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 165 LVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred EEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 344556777899999999999999999999999987
No 224
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.77 E-value=1e+02 Score=33.05 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=35.6
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVL 390 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VI 390 (823)
+.|+.++++||++|+|.+ -+.. -+..+.+ -+.+++++|.+.+-++||+|.
T Consensus 20 e~l~~~~~~G~~~VEl~~-~~~~----~~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSV-DETD----DRLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHcCCCEEEEec-CCcc----chhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 699999999999999943 2111 0111111 257889999999999999985
No 225
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=26.33 E-value=87 Score=36.45 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=44.5
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASN 400 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~~ 400 (823)
++.|..|+++|++.|.|- |... +..-.-.+ .+-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 151 ~e~l~~lk~~G~~risiG-vqS~--------~~~~l~~l-~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFG-VQDF--------NKEVQQAV-NRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHHcCCCEEEEc-CCCC--------CHHHHHHh-CCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 479999999999999753 2211 11111122 2446789999999999999996 779998765443
No 226
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=26.00 E-value=1.7e+02 Score=26.31 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=32.3
Q ss_pred cCeEEEEeec---CCCCCc-ccccccCCCceEEEEeCCCCCCCCCCCCCCEEEEEEeCC
Q 003390 200 AKSASLIGDF---NNWNPN-ADIMTQNEFGVWEIFLPNNADGSPPIPHGSRVKIHMDTP 254 (823)
Q Consensus 200 A~~V~L~gdf---N~w~~~-~~~m~r~~~GvWei~ip~~~~g~~~~~~g~~y~~~~~~~ 254 (823)
-+.|+|+|+- .+|++. +.+|.......|++.|.-. .+. ...|||.+...
T Consensus 15 Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp-~~~-----~veyKyv~~~~ 67 (97)
T cd05810 15 GQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLP-AST-----NVEWKCLKRNE 67 (97)
T ss_pred CCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcC-CCC-----eEEEEEEEEcC
Confidence 3678999864 589863 4678777778999888632 121 34677765443
No 227
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.88 E-value=1.6e+02 Score=27.12 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=40.5
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
.....+..+|++++.+.+...... ..--....|..-+=+.=|...++.++++.||++|++||.
T Consensus 17 ~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 17 KIAATLSSTGTPAFFLHPTEALHG-DLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHhhcCCCceEEcccchhhcc-ccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 344556778999987755322111 011123333333445667889999999999999999886
No 228
>PRK12928 lipoyl synthase; Provisional
Probab=25.75 E-value=1.6e+02 Score=32.14 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=45.9
Q ss_pred CHHhhHhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 321 TYANFRDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 321 ~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
|...+. +.|..|+++|++.|.+.+... |+ -..-+=.+|=+|++|+.+-+.|.+.|.+-+.
T Consensus 217 T~ed~~-etl~~Lrel~~d~v~i~~Yl~-p~---------~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~ 276 (290)
T PRK12928 217 TEDEVI-ETLRDLRAVGCDRLTIGQYLR-PS---------LAHLPVQRYWTPEEFEALGQIARELGFSHVR 276 (290)
T ss_pred CHHHHH-HHHHHHHhcCCCEEEEEcCCC-CC---------ccCCceeeccCHHHHHHHHHHHHHcCCceeE
Confidence 667777 699999999999998877543 22 1122335788999999999999999987554
No 229
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=25.69 E-value=68 Score=36.65 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=46.4
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEecccccCCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL-VLMDIVHSHASNN 401 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~-VIlDvV~NH~~~~ 401 (823)
+++|..|+++|||.|.|- |+... ..-.-.+ .|--+.++..+-++.+++.|+. |-+|+.++.-+.+
T Consensus 115 ~e~l~~l~~~GvnrislG-vQS~~--------d~~L~~l-~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLG-VQAFQ--------DELLALC-GRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEE-cccCC--------HHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCC
Confidence 468999999999999753 33211 1111122 3455889999999999999999 7899998765543
No 230
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=25.64 E-value=63 Score=30.46 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 003390 367 SRCGTPDDLKSLIDKAHELGLLVLMD 392 (823)
Q Consensus 367 ~~~Gt~edlk~LV~~aH~~GI~VIlD 392 (823)
-++.+..|+|.+-....++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 47778999999999999999999999
No 231
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=25.52 E-value=80 Score=36.73 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=45.5
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcC-CEEEEEecccccCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELG-LLVLMDIVHSHASN 400 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~G-I~VIlDvV~NH~~~ 400 (823)
+++|..++++|||.|.| .|+.... .-.-.+ .|--+.++..+-|+.+++.| +.|.+|++++.-+.
T Consensus 163 ~e~l~~l~~aGvnRiSi-GVQSf~d--------~vLk~l-gR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 163 DEKADAALDAGANRFSI-GVQSFNT--------QVRRRA-GRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEe-cCCcCCH--------HHHHHh-CCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 47999999999999953 4443211 011111 24447899999999999999 89999999875544
No 232
>PLN02899 alpha-galactosidase
Probab=24.59 E-value=1.3e+03 Score=28.06 Aligned_cols=143 Identities=18% Similarity=0.236 Sum_probs=74.9
Q ss_pred HHhhHhhhhhhHHHcCCCEEEECCcccCC-----CCCCCCCcccc---ccCcCC-CCC---CHHHHHHHHHHHHHcCCEE
Q 003390 322 YANFRDDVLPRIKRLGYNAVQIMAVQEHS-----YYASFGYHVTN---FFAPSS-RCG---TPDDLKSLIDKAHELGLLV 389 (823)
Q Consensus 322 ~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~-----~~~~~GY~~~~---~~a~~~-~~G---t~edlk~LV~~aH~~GI~V 389 (823)
++..++..-.-|+++||+.|-|==-+... +..+.|.++.| -..++| ||= +..-||.|.+.+|++|+|.
T Consensus 50 i~~~Ad~vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKF 129 (633)
T PLN02899 50 FLQNAEIVSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKF 129 (633)
T ss_pred HHHHHHHHHcchHhhCCeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcce
Confidence 34444434457999999999764333211 11122322222 333443 442 2357999999999999987
Q ss_pred EEEecccccCCCccccc--------cCCCCCCCCccccCC--CCCcccCCC---CCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003390 390 LMDIVHSHASNNVLDGL--------NMFDGTDGHYFHSGS--RGYHWMWDS---RLFNYGSWEVLRFLLSNARWWLEEYK 456 (823)
Q Consensus 390 IlDvV~NH~~~~~~~~~--------~~fdg~~~~yf~~~~--~g~~~~w~~---~~ln~~~~~V~~~l~~~l~~Wl~e~g 456 (823)
=+=+...-......... ..+.+....+...+- ......|.. ...|...+.-+.|+-+.++.|.+ .|
T Consensus 130 GIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla~tfAs-WG 208 (633)
T PLN02899 130 GIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWMSHGFMSVNTKLGAGKAFLRSLYDQYAE-WG 208 (633)
T ss_pred EEEecCCCcccccccCCccccccccccccccccccchhhccccccccccCCCCcccccccccchhhhhHHHHHHHHH-hC
Confidence 55443331100000000 012221112221110 011122322 24566677778888888888988 99
Q ss_pred ceEEEEccc
Q 003390 457 FDGFRFDGV 465 (823)
Q Consensus 457 vDGfR~D~v 465 (823)
||=+-+|.+
T Consensus 209 VDyLKyD~c 217 (633)
T PLN02899 209 VDFVKHDCV 217 (633)
T ss_pred CCEEEEcCC
Confidence 999999964
No 233
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.42 E-value=1.2e+02 Score=35.28 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
++.|..++++|++.|.+ .+... . ....-.+.-. -+.++..+.++.||+.||.|..++++.
T Consensus 287 ~e~l~~l~~aG~~~v~i-GiES~-s-------~~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 287 YETLKVMKENGLRLLLV-GYESG-D-------QQILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred HHHHHHHHHcCCCEEEE-cCCCC-C-------HHHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 46889999999999874 33221 1 1111222222 267899999999999999999999874
No 234
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=24.23 E-value=1.3e+02 Score=29.74 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=36.1
Q ss_pred hhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003390 329 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVH 395 (823)
Q Consensus 329 ~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 395 (823)
..--|+.||..+..+. .++..++...-..+.+.++++.+++.|+.|++|.+.
T Consensus 42 ~a~~l~~LG~~~~~~~---------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 42 VAVALARLGVSVTLVG---------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHCCCcEEEEE---------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCc
Confidence 4445788999877665 233333322111478999999999999999999874
No 235
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=24.21 E-value=44 Score=33.44 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=34.5
Q ss_pred hhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 330 L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
|..++++|++.|+|.+...... ... .++++++.+.+.+.||.|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~--------~~~---------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPW--------DEK---------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHH--------THH---------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccc--------ccc---------hHHHHHHHHHHHHcCCeEEE
Confidence 4578999999999988654322 110 78899999999999999654
No 236
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=24.20 E-value=2.5e+02 Score=22.87 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=31.9
Q ss_pred EEEEEECCCCCcccceEEcccCCce-EEEEEeCCCCCcCCccccCCCccccccccccCCCCeEEEEEEcCceEEEEE
Q 003390 737 LVFVFNFHWNSSYSDYRVGCLKPGK-YKIVLDSDDPLFGGYKRLDHNAEYFSLEGWYDDQPHSFLVYAPSRTAVVYA 812 (823)
Q Consensus 737 llvv~Nf~~~~~~~~~~l~v~~~g~-~~~vl~sd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~i~l~lp~~s~~V~~ 812 (823)
|+|++|.++ ......|+...+|+ |.+.+. ... ...+ -+.++...+.+||++..|+.
T Consensus 1 L~v~iN~~~--~~k~~~Vgt~~ag~~~~D~tG--------n~~-----~~vt-----id~dG~~~f~v~~~s~SVWs 57 (57)
T PF09154_consen 1 LAVYINGSA--GWKRMWVGTNWAGKTFYDYTG--------NSS-----ETVT-----IDEDGWGEFPVPPGSVSVWS 57 (57)
T ss_dssp EEEEEE-SS--SEEEEEEEGGGTTEEEEETTS--------SSS-----SEEE-----E-TTSEEEEEE-TTEEEEEE
T ss_pred CEEEEeCCC--CeEEEEEccccCCCEEEEccC--------CCC-----CeEE-----ECCCeEEEEEECCCEEEEeC
Confidence 567779884 44567777666664 555432 110 0111 13345688999999999874
No 237
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=23.79 E-value=7.5e+02 Score=30.44 Aligned_cols=126 Identities=13% Similarity=0.027 Sum_probs=73.3
Q ss_pred hhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHH-HHHHHHHH-HcCCEEEEEecccccCCCcccc
Q 003390 328 DVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDL-KSLIDKAH-ELGLLVLMDIVHSHASNNVLDG 405 (823)
Q Consensus 328 ~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edl-k~LV~~aH-~~GI~VIlDvV~NH~~~~~~~~ 405 (823)
..|++|+++|+|+|+|-.+.+...++. +.-.|=++.++=-..|| -+..=.++ +.|++|..=+..--+.-.. .
T Consensus 338 ~l~~ri~~~~~~~VyLqafadp~gdg~----~~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~--~ 411 (672)
T PRK14581 338 KLVQRISDLRVTHVFLQAFSDPKGDGN----IRQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDP--S 411 (672)
T ss_pred HHHHHHHhcCCCEEEEEeeeCCCCCCc----eeeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCc--c
Confidence 688999999999999999987655432 23334445555445554 44435555 5599998776543221100 0
Q ss_pred ccCCCCCCCCccccCC-CCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHhcCceEEEEcc
Q 003390 406 LNMFDGTDGHYFHSGS-RGYHWMWDSRLFNYGSWEVLRFLLSNARWWLEEYKFDGFRFDG 464 (823)
Q Consensus 406 ~~~fdg~~~~yf~~~~-~g~~~~w~~~~ln~~~~~V~~~l~~~l~~Wl~e~gvDGfR~D~ 464 (823)
+. ....+.... ......-+.+-|.--+|++|+.|.+...-....-.|||+=|.-
T Consensus 412 ~~-----~~~~~~~~~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 412 LP-----RITRIDPKTGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred cc-----hhhhcccccCccccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 00 000110000 0000000123466668999999999999999844899987743
No 238
>PRK05939 hypothetical protein; Provisional
Probab=23.76 E-value=90 Score=35.61 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003390 367 SRCGTPDDLKSLIDKAHELGLLVLMDIVH 395 (823)
Q Consensus 367 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~ 395 (823)
...|...+++++++.||++|+.||+|-.+
T Consensus 142 NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 142 NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 34688899999999999999999999664
No 239
>PLN02389 biotin synthase
Probab=23.22 E-value=1.7e+02 Score=33.21 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=43.9
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
++.+..||+.|++.+.+ .++.. +.-|-.+.+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs--------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS--------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC--------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 47899999999999866 23321 1122233322 3889999999999999999988888877
No 240
>PRK05967 cystathionine beta-lyase; Provisional
Probab=23.01 E-value=97 Score=35.41 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 365 PSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 365 ~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
|....++..+++++++.||++|+-||+|-++.
T Consensus 158 PsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 158 PGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 33346899999999999999999999997764
No 241
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=22.93 E-value=93 Score=25.06 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=29.1
Q ss_pred CCcEEEEEc-CcEEEEEECCCCCcccceEEcccCCceEEEEEeC
Q 003390 726 GDRVIVFER-GNLVFVFNFHWNSSYSDYRVGCLKPGKYKIVLDS 768 (823)
Q Consensus 726 ~~~Vlaf~R-~~llvv~Nf~~~~~~~~~~l~v~~~g~~~~vl~s 768 (823)
+..+..|.| ..++|++-.. ...+|.+.+...|.|++++..
T Consensus 8 ~~glcgf~r~~kilviiktk---gs~n~~~~~e~~~~ytdv~t~ 48 (66)
T PF09196_consen 8 EEGLCGFIRFNKILVIIKTK---GSVNYKYKIEEGAIYTDVITG 48 (66)
T ss_dssp -TTEEEEEETTTEEEEEES----TTSSCEEEEECCEEEEETTTT
T ss_pred hhcceeEEecCEEEEEEecc---cccceeeeeccCcEEEeeecC
Confidence 466899999 5788888764 345667777788999998753
No 242
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=22.85 E-value=91 Score=35.13 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 371 TPDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 371 t~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
|.+-|+++.+.||+.||-||-|=|+.|+.-.
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 5688999999999999999999999999543
No 243
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=22.56 E-value=97 Score=36.79 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=43.9
Q ss_pred HhhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 326 RDDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 326 ~~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
.++.|..|+++|+|.|+|-. +... + .-.-.+ .|=-|.++..+-++.+++.|++|.+|+.++
T Consensus 205 ~~e~L~~L~~~G~~rVslGV-QS~~-------d-~VL~~i-nRght~~~v~~Ai~~lr~~G~~v~~~LM~G 265 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGV-QTIY-------N-DILERT-KRGHTVRDVVEATRLLRDAGLKVVYHIMPG 265 (522)
T ss_pred CHHHHHHHHHcCCCEEEEEC-ccCC-------H-HHHHHh-CCCCCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 35799999999999998643 2111 0 011122 233478999999999999999999999875
No 244
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=22.23 E-value=78 Score=35.77 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 367 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 367 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
...|+..+++++++.||++|+.||+|-++.
T Consensus 169 ~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 169 GNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 456888999999999999999999998754
No 245
>PRK09028 cystathionine beta-lyase; Provisional
Probab=21.94 E-value=1e+02 Score=35.15 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 369 CGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 369 ~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
.|...+++++++.||++|+.||+|-++.
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 4788999999999999999999997753
No 246
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=21.81 E-value=1.4e+02 Score=31.00 Aligned_cols=42 Identities=10% Similarity=0.275 Sum_probs=30.2
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCE
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLL 388 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~ 388 (823)
+.-+..|+++|.+.|=++|+-- +-..+||+.+.++|-++|+.
T Consensus 138 etAiaml~dmG~~SiKffPM~G--------------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 138 ETAIAMLKDMGGSSVKFFPMGG--------------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred HHHHHHHHHcCCCeeeEeecCC--------------------cccHHHHHHHHHHHHHcCCc
Confidence 3678999999999999888741 12356677777777666653
No 247
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=21.73 E-value=75 Score=34.47 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEec
Q 003390 368 RCGTPDDLKSLIDKAHELGLLVLMDIV 394 (823)
Q Consensus 368 ~~Gt~edlk~LV~~aH~~GI~VIlDvV 394 (823)
...=.|-+++||++|++- |.|+||+-
T Consensus 132 ~p~IKE~vR~~I~~A~kV-IAIVMD~F 157 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKV-IAIVMDVF 157 (284)
T ss_pred CCCHHHHHHHHHHHhcce-eEEEeecc
Confidence 334468899999999998 99999964
No 248
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=21.41 E-value=1e+02 Score=33.39 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=36.6
Q ss_pred hhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeccccc
Q 003390 330 LPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHA 398 (823)
Q Consensus 330 L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~ 398 (823)
+..+..-.+..|.+.++ .++. | ..=+.+++++|++.||++|+.||+|-++...
T Consensus 125 ~~~~~~~~~~~v~i~~~-~~~t----G-----------~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 125 LEAAKTPKTKLLYLNNP-NNPT----G-----------AVLSEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred HHhhcCccceEEEEECC-CCCC----C-----------cccCHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 33344556778877662 2221 2 1125689999999999999999999987543
No 249
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.96 E-value=1.7e+02 Score=30.45 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=32.5
Q ss_pred hhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 003390 329 VLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMD 392 (823)
Q Consensus 329 ~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlD 392 (823)
-+..|+++|++.|- .|--|. .-..+++.+++.+|++.||.+|++
T Consensus 77 ~~~~l~~~G~~~vi-i~~ser-------------------~~~~~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 77 LPEAVKDAGAVGTL-INHSER-------------------RLTLADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred HHHHHHHcCCCEEE-Eecccc-------------------ccCHHHHHHHHHHHHHCCCeEEEE
Confidence 47889999999993 332211 112466899999999999999974
No 250
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.81 E-value=2.4e+02 Score=29.71 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecccc
Q 003390 369 CGTPDDLKSLIDKAHELGLLVLMDIVHSH 397 (823)
Q Consensus 369 ~Gt~edlk~LV~~aH~~GI~VIlDvV~NH 397 (823)
+-|.+++.+|++++-.-++++++|+-+-+
T Consensus 155 ~~~~~~~~~ll~~v~~~~v~l~~D~~h~~ 183 (258)
T PRK09997 155 LTGTRQALKLIDDVGCCNLKIQYDIYHMQ 183 (258)
T ss_pred cCCHHHHHHHHHHhCCCCEEEEeEHHHhh
Confidence 35778888888888767788888875433
No 251
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=20.63 E-value=1.8e+02 Score=34.37 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=53.8
Q ss_pred CCceEEEeecCCCCCCCCCCCHHhhHhhhhhhHHHcCCCEEEECCcccCC--CCCCCCCccccccCcCCCCCCHHHHHHH
Q 003390 301 KSLRIYEAHVGMSSTEPIINTYANFRDDVLPRIKRLGYNAVQIMAVQEHS--YYASFGYHVTNFFAPSSRCGTPDDLKSL 378 (823)
Q Consensus 301 ~~~~IYE~hv~~f~~~~~~G~~~~~~~~~L~yLk~LGvt~I~L~Pi~e~~--~~~~~GY~~~~~~a~~~~~Gt~edlk~L 378 (823)
..+-+|.++.. ..-++|+|..++-..++-+.+-|.+.++|+|+..-. ...+--|.+.+=+++++-|=+++.+-++
T Consensus 16 ~~v~L~~~~~~---~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~~~~SPYs~~S~~a~N~~~Id~~~l~e~ 92 (520)
T COG1640 16 SGVQLYSLRLP---GSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAYEEDSPYSPSSRRALNPLYIDVEALPEF 92 (520)
T ss_pred ceeEEeeeccC---CCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccccCCCCCCchhhhccCceeecHHHhhhh
Confidence 45667766432 234789999888656677779999999999998643 1224567888878888877777766666
No 252
>PRK15452 putative protease; Provisional
Probab=20.60 E-value=1.6e+02 Score=34.28 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=33.2
Q ss_pred hhhhHHHcCCCEEEECC-cccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 003390 329 VLPRIKRLGYNAVQIMA-VQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLM 391 (823)
Q Consensus 329 ~L~yLk~LGvt~I~L~P-i~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIl 391 (823)
.|...-+.|.++|++-. -+. +.-...+ | +.++|++.|+.||++|++|.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~------~R~~~~~-------f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYS------LRVRNNE-------F-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHCCCCEEEECCCccc------hhhhccC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 45556678999999832 111 1000112 2 568999999999999999977
No 253
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=20.47 E-value=2.3e+02 Score=30.20 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhcCceEEEEcccccccccccCccccccCCcccccCcccC-hhHHHHHHHHHHhhhccCCCEEEEEe
Q 003390 440 VLRFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGFATD-VDAVVYLMLVNDMIHGLYPEAVSIGE 518 (823)
Q Consensus 440 V~~~l~~~l~~Wl~e~gvDGfR~D~v~~m~~~~~g~~~~f~~~~~~~~g~~~d-~~~~~fl~~~~~~v~~~~p~~~~igE 518 (823)
.++-+++++.-++++||+||+-+|-=.. ..+ ..-..+++++++.+++.. .++++-
T Consensus 97 ~~~~fv~S~~~~l~~~~fDGiDiDwE~~----------------------~~d~~~f~~ll~~l~~~l~~~~--~lt~a~ 152 (253)
T cd06544 97 WVSNAVSSLTSIIQTYNLDGIDIDYEHF----------------------PADPDTFVECIGQLITELKNNG--VIKVAS 152 (253)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeecccC----------------------CcCHHHHHHHHHHHHHHhhhcC--CeEEEE
Confidence 3444567788888889999999884210 011 122367788888887642 555554
Q ss_pred c
Q 003390 519 D 519 (823)
Q Consensus 519 ~ 519 (823)
.
T Consensus 153 v 153 (253)
T cd06544 153 I 153 (253)
T ss_pred e
Confidence 3
No 254
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=20.40 E-value=67 Score=34.78 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecc
Q 003390 369 CGTPDDLKSLIDKAHELGLLVLMDIVH 395 (823)
Q Consensus 369 ~Gt~edlk~LV~~aH~~GI~VIlDvV~ 395 (823)
+|+..+++++++.||++|+.||+|-++
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA~ 192 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECcc
Confidence 467778999999999999999999874
No 255
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=20.22 E-value=77 Score=35.27 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 367 SRCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 367 ~~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
...|+..+++++++.||++|+.||+|-++.
T Consensus 150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 345778889999999999999999998764
No 256
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.19 E-value=1.2e+02 Score=34.37 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeccc
Q 003390 368 RCGTPDDLKSLIDKAHELGLLVLMDIVHS 396 (823)
Q Consensus 368 ~~Gt~edlk~LV~~aH~~GI~VIlDvV~N 396 (823)
..|...+++++++.||++|+.||+|-++.
T Consensus 147 p~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 147 ITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 45889999999999999999999997754
No 257
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.17 E-value=1.3e+02 Score=34.30 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=47.0
Q ss_pred hhhhhhHHHcCCCEEEECCcccCCCCCCCCCccccccCcCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccCCC
Q 003390 327 DDVLPRIKRLGYNAVQIMAVQEHSYYASFGYHVTNFFAPSSRCGTPDDLKSLIDKAHELGLLVLMDIVHSHASNN 401 (823)
Q Consensus 327 ~~~L~yLk~LGvt~I~L~Pi~e~~~~~~~GY~~~~~~a~~~~~Gt~edlk~LV~~aH~~GI~VIlDvV~NH~~~~ 401 (823)
.++|..|+++|||.|.|- |+... ..- ...-.|.-+.++..+.++.|++.++.|-+|++++.-+.+
T Consensus 111 ~e~l~~l~~~GvnRiSiG-vQS~~--------d~~-L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIG-VQSLK--------EDD-LKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEE-CCcCC--------HHH-HHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 379999999999999753 22211 111 112246667899999999999999999999998876554
Done!