Query 003392
Match_columns 823
No_of_seqs 208 out of 959
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 22:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189 Vacuolar H+-ATPase V0 100.0 2E-182 4E-187 1520.9 70.8 795 15-821 1-826 (829)
2 PF01496 V_ATPase_I: V-type AT 100.0 2E-135 4E-140 1229.9 11.9 747 40-816 1-759 (759)
3 PRK05771 V-type ATP synthase s 100.0 2.2E-98 5E-103 892.3 66.3 638 20-819 2-644 (646)
4 COG1269 NtpI Archaeal/vacuolar 100.0 1.9E-91 4.1E-96 825.7 58.2 638 19-822 1-658 (660)
5 PF14257 DUF4349: Domain of un 93.5 0.33 7.1E-06 52.1 9.2 96 25-139 96-191 (262)
6 PF03223 V-ATPase_C: V-ATPase 89.8 40 0.00087 38.1 23.0 159 191-368 177-338 (371)
7 PRK05771 V-type ATP synthase s 82.9 13 0.00027 45.4 13.0 93 101-225 213-306 (646)
8 PF05667 DUF812: Protein of un 73.0 1.8E+02 0.004 35.1 18.3 45 106-150 345-389 (594)
9 PF05767 Pox_A14: Poxvirus vir 70.9 21 0.00046 31.5 7.3 49 552-600 13-61 (92)
10 PF05377 FlaC_arch: Flagella a 68.0 28 0.00061 28.0 6.8 36 105-140 2-37 (55)
11 COG1269 NtpI Archaeal/vacuolar 65.3 52 0.0011 40.2 12.0 35 193-227 288-322 (660)
12 PRK10884 SH3 domain-containing 59.3 48 0.001 34.3 8.7 88 46-141 65-156 (206)
13 PRK11637 AmiB activator; Provi 58.0 46 0.001 38.3 9.4 26 111-136 90-115 (428)
14 PRK11637 AmiB activator; Provi 56.1 1.2E+02 0.0027 34.9 12.4 33 106-138 78-110 (428)
15 PRK02302 hypothetical protein; 53.9 14 0.00031 32.7 3.2 52 19-71 31-82 (89)
16 KOG2189 Vacuolar H+-ATPase V0 50.7 1.9E+02 0.0041 35.6 12.6 89 281-370 91-199 (829)
17 PF09902 DUF2129: Uncharacteri 50.5 15 0.00033 31.2 2.8 38 19-56 25-62 (71)
18 KOG0996 Structural maintenance 49.9 5.1E+02 0.011 33.5 16.4 13 33-45 777-789 (1293)
19 PRK10692 hypothetical protein; 49.8 62 0.0014 28.4 6.3 49 552-610 12-60 (92)
20 PF07106 TBPIP: Tat binding pr 49.8 1.2E+02 0.0025 30.2 9.6 92 31-132 30-138 (169)
21 PF01496 V_ATPase_I: V-type AT 46.4 80 0.0017 39.3 9.5 26 193-218 289-314 (759)
22 cd00584 Prefoldin_alpha Prefol 44.4 2.7E+02 0.0059 26.1 13.7 40 106-145 2-41 (129)
23 COG2433 Uncharacterized conser 44.2 56 0.0012 38.7 6.9 40 101-140 472-511 (652)
24 cd00890 Prefoldin Prefoldin is 43.7 2.7E+02 0.0059 25.8 14.6 40 106-145 2-41 (129)
25 PF10762 DUF2583: Protein of u 42.9 79 0.0017 27.7 5.9 49 552-610 12-60 (89)
26 PF08946 Osmo_CC: Osmosensory 42.7 51 0.0011 25.3 4.2 27 105-131 14-40 (46)
27 PF06160 EzrA: Septation ring 42.7 3.8E+02 0.0083 32.1 14.0 82 272-367 184-265 (560)
28 COG1382 GimC Prefoldin, chaper 42.2 1.8E+02 0.0039 27.4 8.7 41 100-140 67-107 (119)
29 PF10481 CENP-F_N: Cenp-F N-te 41.6 2.1E+02 0.0047 30.6 10.0 75 66-152 14-88 (307)
30 PF05377 FlaC_arch: Flagella a 39.4 1.3E+02 0.0029 24.3 6.3 38 105-142 9-46 (55)
31 PHA02562 46 endonuclease subun 38.0 34 0.00075 40.7 4.3 21 67-87 327-347 (562)
32 PHA02898 virion envelope prote 37.9 1.4E+02 0.003 26.5 6.6 45 552-596 13-57 (92)
33 PF04977 DivIC: Septum formati 36.9 96 0.0021 26.2 5.9 32 105-136 19-50 (80)
34 PRK10884 SH3 domain-containing 36.8 1.5E+02 0.0032 30.7 8.1 93 44-138 75-167 (206)
35 KOG4603 TBP-1 interacting prot 36.8 3.3E+02 0.0071 27.2 9.8 55 101-155 114-170 (201)
36 COG4471 Uncharacterized protei 36.7 50 0.0011 29.1 3.8 52 20-72 31-82 (90)
37 PRK00295 hypothetical protein; 36.6 1.9E+02 0.0041 24.4 7.3 11 72-82 7-17 (68)
38 PRK00888 ftsB cell division pr 36.2 1E+02 0.0022 28.3 6.1 41 104-144 28-68 (105)
39 PF04102 SlyX: SlyX; InterPro 36.0 1.6E+02 0.0036 24.7 6.9 14 71-84 5-18 (69)
40 PRK13108 prolipoprotein diacyl 36.0 7.3E+02 0.016 29.0 14.4 22 476-497 136-158 (460)
41 PRK02793 phi X174 lysis protei 35.5 1.6E+02 0.0034 25.1 6.7 12 71-82 9-20 (72)
42 KOG0964 Structural maintenance 35.0 1.1E+03 0.023 30.2 18.3 31 282-312 678-708 (1200)
43 PF05529 Bap31: B-cell recepto 35.0 1.5E+02 0.0033 30.0 7.9 32 106-137 157-188 (192)
44 COG4477 EzrA Negative regulato 34.7 8.4E+02 0.018 28.9 14.2 51 253-307 357-407 (570)
45 PF10805 DUF2730: Protein of u 34.3 2.9E+02 0.0062 25.3 8.8 60 70-139 42-101 (106)
46 PRK04325 hypothetical protein; 34.3 1.7E+02 0.0038 25.0 6.8 10 72-81 11-20 (74)
47 PRK02886 hypothetical protein; 33.8 52 0.0011 29.1 3.5 38 19-56 29-66 (87)
48 COG3323 Uncharacterized protei 33.6 35 0.00075 31.3 2.5 34 22-55 3-36 (109)
49 TIGR02338 gimC_beta prefoldin, 32.9 1.2E+02 0.0025 28.0 6.0 38 102-139 66-103 (110)
50 PRK04778 septation ring format 32.6 7.7E+02 0.017 29.6 14.5 31 271-301 187-217 (569)
51 PF07666 MpPF26: M penetrans p 32.5 2E+02 0.0042 27.6 7.5 81 405-489 39-120 (130)
52 PF11348 DUF3150: Protein of u 32.5 1.4E+02 0.0031 31.9 7.4 64 253-322 55-118 (257)
53 PF06005 DUF904: Protein of un 32.5 2E+02 0.0044 24.5 6.9 24 115-138 9-32 (72)
54 COG3388 Predicted transcriptio 32.1 1.5E+02 0.0033 26.6 6.1 55 78-135 44-98 (101)
55 COG5185 HEC1 Protein involved 31.9 8.7E+02 0.019 28.3 17.2 34 102-135 329-362 (622)
56 PF01920 Prefoldin_2: Prefoldi 31.7 1.7E+02 0.0037 26.1 6.9 38 102-139 61-98 (106)
57 PF06120 Phage_HK97_TLTM: Tail 31.5 1.6E+02 0.0035 32.3 7.7 52 34-88 55-106 (301)
58 PF04949 Transcrip_act: Transc 31.4 4.7E+02 0.01 25.6 9.7 69 64-140 53-121 (159)
59 PRK00736 hypothetical protein; 31.4 2.2E+02 0.0048 24.0 6.8 7 106-112 8-14 (68)
60 PF07889 DUF1664: Protein of u 30.6 89 0.0019 29.7 4.8 31 106-136 78-108 (126)
61 TIGR03185 DNA_S_dndD DNA sulfu 30.5 2.5E+02 0.0055 34.3 10.1 38 103-140 421-458 (650)
62 cd00632 Prefoldin_beta Prefold 30.4 3.2E+02 0.0069 24.8 8.5 39 101-139 61-99 (105)
63 COG1579 Zn-ribbon protein, pos 30.4 1.6E+02 0.0034 31.3 7.1 37 104-140 90-126 (239)
64 PF05278 PEARLI-4: Arabidopsis 29.7 1.9E+02 0.0041 31.1 7.6 50 102-151 206-255 (269)
65 PF08181 DegQ: DegQ (SacQ) fam 29.7 1.3E+02 0.0029 22.4 4.4 37 104-140 5-41 (46)
66 PF04728 LPP: Lipoprotein leuc 29.6 1.8E+02 0.004 23.6 5.7 34 105-138 5-38 (56)
67 PF10779 XhlA: Haemolysin XhlA 29.5 2.1E+02 0.0045 24.2 6.5 33 107-139 3-35 (71)
68 smart00338 BRLZ basic region l 29.0 1.6E+02 0.0034 24.2 5.6 35 104-138 27-61 (65)
69 KOG0995 Centromere-associated 28.9 8.5E+02 0.018 29.1 13.1 57 72-133 268-324 (581)
70 PF03962 Mnd1: Mnd1 family; I 28.7 6.4E+02 0.014 25.6 11.9 23 34-56 30-52 (188)
71 COG5374 Uncharacterized conser 28.5 3E+02 0.0066 27.7 8.2 41 102-142 142-182 (192)
72 PF10958 DUF2759: Protein of u 28.5 1.4E+02 0.0031 23.7 4.8 33 566-603 10-42 (52)
73 PF10046 BLOC1_2: Biogenesis o 28.5 4.4E+02 0.0096 23.7 10.6 20 122-141 71-90 (99)
74 COG1315 Uncharacterized conser 28.1 1.5E+02 0.0033 34.5 7.0 70 64-140 414-484 (543)
75 PF08946 Osmo_CC: Osmosensory 28.1 1.1E+02 0.0024 23.6 4.0 30 109-138 11-40 (46)
76 PF04111 APG6: Autophagy prote 28.1 2E+02 0.0043 31.8 7.8 29 113-141 60-88 (314)
77 TIGR02209 ftsL_broad cell divi 27.9 1.8E+02 0.0038 25.1 6.1 38 105-142 26-63 (85)
78 PF04102 SlyX: SlyX; InterPro 27.9 2.7E+02 0.0058 23.4 6.9 33 106-138 7-39 (69)
79 PF15456 Uds1: Up-regulated Du 27.8 2.6E+02 0.0057 26.5 7.5 86 60-148 26-117 (124)
80 PF00170 bZIP_1: bZIP transcri 27.5 2.2E+02 0.0047 23.3 6.2 33 105-137 28-60 (64)
81 PRK10263 DNA translocase FtsK; 27.5 6.5E+02 0.014 33.3 12.9 18 552-569 26-43 (1355)
82 PLN02939 transferase, transfer 27.4 8.4E+02 0.018 31.3 13.7 53 247-299 321-375 (977)
83 PRK09343 prefoldin subunit bet 27.0 4.1E+02 0.0089 24.9 8.7 40 100-139 68-107 (121)
84 PRK14127 cell division protein 26.7 2.5E+02 0.0054 26.1 6.9 43 100-142 20-62 (109)
85 cd04776 HTH_GnyR Helix-Turn-He 26.6 4.1E+02 0.0089 24.7 8.6 34 106-139 76-109 (118)
86 PRK00846 hypothetical protein; 26.5 3.1E+02 0.0067 23.8 7.0 50 70-138 13-62 (77)
87 COG2433 Uncharacterized conser 26.3 4.6E+02 0.0099 31.5 10.4 31 60-90 341-372 (652)
88 PF06156 DUF972: Protein of un 26.1 2.1E+02 0.0045 26.5 6.3 38 107-144 5-42 (107)
89 PF14193 DUF4315: Domain of un 25.9 2.2E+02 0.0049 25.0 6.1 34 105-138 3-36 (83)
90 TIGR00293 prefoldin, archaeal 25.9 1.6E+02 0.0035 27.5 5.9 39 106-144 2-40 (126)
91 PRK10869 recombination and rep 25.8 4.2E+02 0.0091 31.7 10.6 44 70-125 296-339 (553)
92 KOG2829 E2F-like protein [Tran 25.8 6.7E+02 0.015 27.3 10.7 111 14-129 41-158 (326)
93 PF08614 ATG16: Autophagy prot 25.8 5.2E+02 0.011 26.2 10.0 18 69-86 87-104 (194)
94 PRK02119 hypothetical protein; 25.6 3.7E+02 0.008 23.0 7.3 50 70-138 9-58 (73)
95 COG1730 GIM5 Predicted prefold 25.0 6.6E+02 0.014 24.6 15.1 44 103-146 6-49 (145)
96 KOG0796 Spliceosome subunit [R 24.8 4.3E+02 0.0094 29.1 9.3 14 11-25 40-53 (319)
97 PF07851 TMPIT: TMPIT-like pro 24.7 83 0.0018 34.9 4.0 13 561-573 269-281 (330)
98 PF06005 DUF904: Protein of un 24.7 2.3E+02 0.005 24.2 5.9 40 105-144 6-45 (72)
99 COG0497 RecN ATPase involved i 24.3 5.6E+02 0.012 30.6 10.9 23 70-92 297-319 (557)
100 PF02403 Seryl_tRNA_N: Seryl-t 24.1 2.5E+02 0.0054 25.4 6.6 62 66-136 39-100 (108)
101 PF14193 DUF4315: Domain of un 23.9 2.3E+02 0.0051 24.9 5.9 36 111-146 2-37 (83)
102 PRK00736 hypothetical protein; 23.7 3.4E+02 0.0074 22.8 6.7 14 71-84 6-19 (68)
103 KOG2264 Exostosin EXT1L [Signa 23.6 1.2E+02 0.0025 35.7 4.9 27 386-413 447-477 (907)
104 PF11471 Sugarporin_N: Maltopo 23.5 1.5E+02 0.0033 24.4 4.4 30 107-136 29-58 (60)
105 COG3937 Uncharacterized conser 23.5 3E+02 0.0065 25.4 6.6 26 101-126 81-106 (108)
106 PF12958 DUF3847: Protein of u 23.4 2E+02 0.0043 25.5 5.3 34 104-137 2-35 (86)
107 PF03233 Cauli_AT: Aphid trans 23.3 3.3E+02 0.0071 27.1 7.3 51 68-127 109-159 (163)
108 PF01102 Glycophorin_A: Glycop 23.2 79 0.0017 29.9 3.0 13 425-437 67-79 (122)
109 KOG4098 Molecular chaperone Pr 23.2 1.9E+02 0.004 27.6 5.4 36 328-365 50-86 (140)
110 COG4942 Membrane-bound metallo 23.2 2.8E+02 0.0061 31.8 7.9 36 104-139 74-109 (420)
111 KOG4657 Uncharacterized conser 23.2 4.6E+02 0.0099 27.5 8.6 31 111-141 87-117 (246)
112 PF05529 Bap31: B-cell recepto 23.1 1.5E+02 0.0032 30.1 5.3 33 110-142 154-186 (192)
113 PRK14127 cell division protein 22.9 2.1E+02 0.0045 26.6 5.6 37 104-140 31-67 (109)
114 PF02346 Vac_Fusion: Chordopox 22.3 4.4E+02 0.0095 21.6 6.7 43 104-146 2-44 (57)
115 PF12725 DUF3810: Protein of u 22.2 1.3E+02 0.0028 33.3 5.0 57 431-490 23-80 (318)
116 PF00261 Tropomyosin: Tropomyo 22.1 3E+02 0.0066 28.9 7.6 14 70-83 92-105 (237)
117 PRK13169 DNA replication intia 22.1 2.8E+02 0.006 25.8 6.3 40 106-145 4-43 (110)
118 PF11221 Med21: Subunit 21 of 22.0 4.8E+02 0.01 25.3 8.4 37 278-314 100-136 (144)
119 PRK10263 DNA translocase FtsK; 21.9 7.9E+02 0.017 32.6 12.2 18 475-492 27-44 (1355)
120 COG4839 FtsL Protein required 21.8 2E+02 0.0044 26.9 5.3 44 105-148 62-105 (120)
121 PHA03048 IMV membrane protein; 21.7 4.3E+02 0.0093 23.5 6.9 44 552-596 13-56 (93)
122 PF10168 Nup88: Nuclear pore c 21.6 1.1E+03 0.023 29.4 13.1 17 351-367 682-698 (717)
123 PRK00295 hypothetical protein; 21.6 4E+02 0.0086 22.4 6.7 35 105-139 7-41 (68)
124 PHA02680 ORF090 IMV phosphoryl 21.5 4.6E+02 0.01 23.2 7.0 44 552-595 13-57 (91)
125 PF13863 DUF4200: Domain of un 21.5 2.8E+02 0.0061 25.7 6.6 38 114-151 78-115 (126)
126 PRK04325 hypothetical protein; 21.3 3.9E+02 0.0085 22.9 6.7 32 106-137 12-43 (74)
127 TIGR02449 conserved hypothetic 21.2 4.6E+02 0.0099 22.0 6.7 38 105-142 2-39 (65)
128 PF06156 DUF972: Protein of un 21.1 3.4E+02 0.0073 25.1 6.7 37 105-141 10-46 (107)
129 TIGR02894 DNA_bind_RsfA transc 20.7 5.3E+02 0.011 25.6 8.2 29 111-139 105-133 (161)
130 PRK01203 prefoldin subunit alp 20.6 2.9E+02 0.0062 26.5 6.2 39 106-144 3-41 (130)
131 PF03961 DUF342: Protein of un 20.5 5.4E+02 0.012 29.9 10.0 36 106-141 371-406 (451)
132 PRK04406 hypothetical protein; 20.5 4.7E+02 0.01 22.5 7.0 21 107-127 8-28 (75)
No 1
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=100.00 E-value=2.1e-182 Score=1520.94 Aligned_cols=795 Identities=53% Similarity=0.885 Sum_probs=702.2
Q ss_pred CCCccccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 003392 15 PMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS 94 (823)
Q Consensus 15 ~~s~fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~ 94 (823)
|+||||||+|+++|+++|+|.|++||++|||+|+|||+|||+++++|||.|+++++||||||||+||++++++|.+++.+
T Consensus 1 ~~s~fRSE~M~L~Ql~l~~eaAy~~vaeLGelGlvqFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~ 80 (829)
T KOG2189|consen 1 MGSLFRSEEMCLVQLFLQSEAAYQCVAELGELGLVQFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLP 80 (829)
T ss_pred CccccccccceeeEEEecHHHHHHHHHHhhccCeeEeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhhhhccCC
Q 003392 95 ---VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGE 171 (823)
Q Consensus 95 ---~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~i~~~~ 171 (823)
+..++|.+.+++++|++++++|+|+++++++.++|+++.++|.|++++|+++++||+.......+ . +....
T Consensus 81 ~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~--~--~~~~~-- 154 (829)
T KOG2189|consen 81 DLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFE--D--DETAD-- 154 (829)
T ss_pred CccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhc--c--hhhhh--
Confidence 45567788999999999999999999999999999999999999999999999999853211000 0 00000
Q ss_pred CCcCCCCccccccCCCCCCcceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEe
Q 003392 172 MTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYS 251 (823)
Q Consensus 172 ~~~~~~ll~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~vv~~~ 251 (823)
....++... + ..+....++++++|+|++++...|+|.|||+||||+|++..++|+++.||.+|+..+|+||+|+++
T Consensus 155 -~~~~~~~~~-~--~~~~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~ 230 (829)
T KOG2189|consen 155 -LGEGPLESA-E--KGPFDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQ 230 (829)
T ss_pred -hcccccchh-c--cCCCCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEee
Confidence 000111111 0 012334589999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 252 GERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYH 331 (823)
Q Consensus 252 ~~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~ 331 (823)
|+..+.||+|||++++++.||+|+++..+++.+.+++.+++|++..+.++++.+...+....+.+..|...++|+|++|+
T Consensus 231 Geql~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyh 310 (829)
T KOG2189|consen 231 GEQLKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIYH 310 (829)
T ss_pred cHHHHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccCcEEEEEEEeecCCHHHHHHHHHhhhhcCCCceEEEEEecCCCCCCCcccccccchhhHHHHHHhccCCC
Q 003392 332 TLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAK 411 (823)
Q Consensus 332 ~l~~~~~~~t~~~~~~~GWvP~~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~l~n~~~~~pFe~iv~~Yg~P~ 411 (823)
+||++++|.|+++++.|||||..+++.++++|++.+...|..++.+.+.+++++.|||+.|+|||+++||.|||.||+++
T Consensus 311 tLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa~ 390 (829)
T KOG2189|consen 311 TLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVAS 390 (829)
T ss_pred HHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhcccc-ccchhhhchhhHHHHHHHHHHHHHHHHHhc
Q 003392 412 YREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQK-LDDITDMTFGGRYVILMMALFSIYTGLIYN 490 (823)
Q Consensus 412 Y~EiDPt~~~ai~Fp~fFG~MfGD~GyGlll~l~~~~l~~~~~~~~~~~-~~~~~~~~~~gr~il~~~gi~si~~G~lyg 490 (823)
|+|+||+|++.|||||+|++||||+|||++++++|+|+++++||+.+.+ .+++++|+|+||||+++||++|||+|+|||
T Consensus 391 YrEvNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliYN 470 (829)
T KOG2189|consen 391 YREVNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIYN 470 (829)
T ss_pred ccccCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999998876 459999999999999999999999999999
Q ss_pred cccccccccccccccccccCCC----Ccccc---cccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHH
Q 003392 491 EFFSVPFEIFSHSAYACRDLSC----SEATT---VGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNL 563 (823)
Q Consensus 491 ~fFG~~~~~fg~s~~~~~~~~~----~~~~~---~g~~~~~~~~~fg~dp~w~~~~~~l~f~ns~~m~~si~iGv~~~~~ 563 (823)
|+|+.++++|| |+|.++.+.. .+... .+..+.+.|||||+||+|+.+.|+|+|+||+|||+||++|++||++
T Consensus 471 D~FSks~niFg-S~W~~~~~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~f 549 (829)
T KOG2189|consen 471 DFFSKSMNIFG-SSWSNPYNVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMTF 549 (829)
T ss_pred hhccccccccc-CcccCccccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999996 9999875432 11111 1111234589999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHhhcCCCCCCCCCccCC
Q 003392 564 GIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWIT------GSQADLYHVMIYMFLSPTDELGDNQLFP 637 (823)
Q Consensus 564 g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~gyl~~~i~~~w~~------~~~p~l~~~~i~~~l~~~~~~~~~~~~~ 637 (823)
|+++++.|++++|++.|++++++||++|+.|+||||+++|+|||+. .++|||++++|||||.|+.. .+.++||
T Consensus 550 Gv~lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~-~~~~lyp 628 (829)
T KOG2189|consen 550 GVILSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTD-AGFQLYP 628 (829)
T ss_pred HHHHHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCC-CccccCC
Confidence 9999999999999999999999999999999999999999999995 36999999999999999862 2238999
Q ss_pred chhhHHHHHHHHHHHHhhhhccchhhhhhhccccc----ccccccccccccccCC----CC-CCCC--CCCCCccchhHH
Q 003392 638 GQKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDR----HQGQSYEALQSTDESL----QP-DTNH--DSHGHEEFEFSE 706 (823)
Q Consensus 638 g~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~~~~~----~~g~~~~~~~~~~~~~----~~-~~~~--~~~~~~~~~~~~ 706 (823)
+|..+|.+++++|++||||||++||++++++|+++ +++..+.....+++.. +. ++.+ +.++++++++||
T Consensus 629 ~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fse 708 (829)
T KOG2189|consen 629 GQKQVQLILLVLALVCVPWMLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFSE 708 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchhh
Confidence 99999999999999999999999999998877653 1222222121111111 11 1111 113445688999
Q ss_pred HHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCc---hhhHHHHHHHHHHHHHHHHHHHhh
Q 003392 707 VFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNN---ILILIVGIIVFIFATVGVLLVMET 783 (823)
Q Consensus 707 ~~i~~~i~~ie~vl~~lsntlSYlRL~Al~LAh~~La~vf~~~~~~~~~~~~~---~~~~i~~~~v~~~~~~~il~~le~ 783 (823)
++|||.|||||+||||+|||+||+||||||||||||++|+|+|++..+++.++ .+++++.+.+|+++|++++++|||
T Consensus 709 I~iHQaIHTIEf~LgcVShTASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~MEG 788 (829)
T KOG2189|consen 709 IFIHQAIHTIEFVLGCVSHTASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLMEG 788 (829)
T ss_pred HHhhhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988875333 222344445677779999999999
Q ss_pred hhhHhhhhhhheeeecccccccCCccccccccccccCc
Q 003392 784 LSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFALLDDE 821 (823)
Q Consensus 784 L~~fiH~lRL~~vEFf~KFY~G~G~~F~Pf~~~~~~~~ 821 (823)
||||+||||||||||+||||+|+|++|.||+++.++++
T Consensus 789 LSAfLHaLRLHWVEFqsKFy~G~Gy~F~PFsF~~~~~~ 826 (829)
T KOG2189|consen 789 LSAFLHALRLHWVEFQSKFYEGTGYKFEPFSFKLILDE 826 (829)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcccccceeehhhhh
Confidence 99999999999999999999999999999999988764
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=100.00 E-value=2e-135 Score=1229.91 Aligned_cols=747 Identities=45% Similarity=0.749 Sum_probs=154.1
Q ss_pred HHHhhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCCCCCCCHHHHHHHHHHHH
Q 003392 40 VSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSS---VKSTTRADNNTDDLEVKLGDLE 116 (823)
Q Consensus 40 v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~---~~~~~~~~~~l~ele~~l~~le 116 (823)
|++||++|+|||+|+|++.+.++|+|+++++||||++++++++++++++.++..+ .....+....++++++++++++
T Consensus 1 V~eLgelG~VqF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le 80 (759)
T PF01496_consen 1 VNELGELGLVQFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELE 80 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhcCCcEEEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998775543 1122334458899999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhHHHHhhhhhhhccCCCCcCCCCccccccCCCCCCcceEE
Q 003392 117 AELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSAL-TSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLG 195 (823)
Q Consensus 117 ~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~ll~~~e~~~~~~~~~~~~ 195 (823)
+++++++++.++|++++++++|++++|++..+.+.... .. ++... +++ .+...+. +....+++
T Consensus 81 ~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~~~~~-------l~~~~-~l~-~~~~~l~-------~~~~~~~~ 144 (759)
T PF01496_consen 81 EELRELNENLEKLEEELNELEEEKNVLEEEIEFLEELKLEE-------LEPWK-NLD-IDLEELE-------SSKFLNLG 144 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhhhh-hcc-cchhhhc-------cccceeee
Confidence 99999999999999999999999999999888776421 00 00000 010 0111111 11134566
Q ss_pred EEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEeChhhHHHHHHhhhccCcEEeeCCC
Q 003392 196 FIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERAKNKILKICDAFGANRYPFNE 275 (823)
Q Consensus 196 ~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~vv~~~~~~~~~~v~~i~~~~~~~~~~~p~ 275 (823)
+++|+||+++.++|++.++|.+++|+|++..+++++..|+. +..++.+|++++++++.+++++++|+++||+++++|+
T Consensus 145 f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~--e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~ 222 (759)
T PF01496_consen 145 FIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPK--EEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPE 222 (759)
T ss_dssp -------HHHHHHHHHHHHHHHTT-----S------EEEE---EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----G
T ss_pred EEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeeccccccc--ceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCC
Confidence 79999999999999999999999999999888888877765 4456889999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC-cEEEEEEEeecC
Q 003392 276 EFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTK-KCLVGEGWSPVF 354 (823)
Q Consensus 276 ~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l~~~~~~~t~-~~~~~~GWvP~~ 354 (823)
..++|++.++++++++++++++++++++++++.++++.+.+..|...+++++++|++++.+ ..++ ++++++||||++
T Consensus 223 ~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~GWvP~~ 300 (759)
T PF01496_consen 223 DEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKF--ASTETNVFILEGWVPEK 300 (759)
T ss_dssp GGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTT---SEEEEEEE-TT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccEEEEEEeccHH
Confidence 8889999999999999999999999999999999999999999999999999999999954 4555 889999999999
Q ss_pred CHHHHHHHHHhhhhcCCCceEEEEEecCCCCCCCcccccccchhhHHHHHHhccCCCCCccCCcchhhHHHHHHHHHHhh
Q 003392 355 ATKQIQDALERAAFDSNSQVGAIFQVLHTKESPPTYFRTNKFTSAFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFG 434 (823)
Q Consensus 355 ~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~l~n~~~~~pFe~iv~~Yg~P~Y~EiDPt~~~ai~Fp~fFG~MfG 434 (823)
+++++++.+++.+.+....+....++++++++|||+++||+|++|||.+|+|||+|+|+|+||||++++|||+|||||||
T Consensus 301 ~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~lknn~~~~pFe~iv~~Yg~P~Y~EiDPt~~~ai~fp~fFG~MfG 380 (759)
T PF01496_consen 301 DVEELKKALEEATDGSEYSVPSIEEEPEEEEEPPTKLKNNKFTKPFEMIVDMYGLPKYREIDPTPFMAITFPFFFGMMFG 380 (759)
T ss_dssp THHHHHHT--SS-EEEE---------------------------------------------------------------
T ss_pred HHHHHHHHHHhhccccccccccccccccccCCCCeeecCchhhhHHHHHHHhcCCCCCCccccchHHHHHHHHHHHHHHh
Confidence 99999999999765542222233445566789999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCCc
Q 003392 435 DWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSE 514 (823)
Q Consensus 435 D~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~gr~il~~~gi~si~~G~lyg~fFG~~~~~fg~s~~~~~~~~~~~ 514 (823)
|+|||++++++|++++++.++.++.+ ++++++++++||++++||++|||||+|||||||.++++|+ ++|.++......
T Consensus 381 D~GyGlll~l~~l~l~~~~~~~~~~~-~e~~~~~~~~~~il~~~gi~si~~G~iyg~~FG~~~~~f~-~~~~~~~~~~~~ 458 (759)
T PF01496_consen 381 DAGYGLLLLLFGLLLIKKFKKLKKMK-NEIFNMLFKLRYILLLMGISSIIFGFIYGSFFGDSLNIFG-SGWNWPMNIKEG 458 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHhccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCcchhcC-ccccccccccCC
Confidence 99999999999999998866665544 7899999999999999999999999999999999999995 888765221000
Q ss_pred ccccccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhHhhhhhHHHHHHH
Q 003392 515 ATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNS 594 (823)
Q Consensus 515 ~~~~g~~~~~~~~~fg~dp~w~~~~~~l~f~ns~~m~~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~ 594 (823)
... ...+..++||||+||.|+...|++.|.||++|++|+++|++||++|++++++|++|+|++.|++.+++|+++|+++
T Consensus 459 ~~~-~~~~~~~~yp~g~dp~~~~~~n~l~f~ns~~m~~SiiiGvi~m~~G~~l~~~n~i~~~~~~d~~~~~~~~~~~~~~ 537 (759)
T PF01496_consen 459 ESI-TLAPSVGPYPFGIDPIWNPATNELLFLNSFKMKLSIIIGVIHMLFGLILKIINNIRFKDKIDIFFAFIPQLLFLIS 537 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cee-eccCccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhcchHHHHHHH
Confidence 000 0001124799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc------CchhHHHHHHHhhcCCCCCCCCCccCCchhhHHHHHHHHHHHHhhhhccchhhhhhhc
Q 003392 595 LFGYLSLLIILKWITG------SQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSVPWMLLPKPFILKMQ 668 (823)
Q Consensus 595 ~~gyl~~~i~~~w~~~------~~p~l~~~~i~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~ 668 (823)
++|||+++|++||++. ++|++++++|+|++.||.. .++||||..+|.++++++++|||||++.+|++++++
T Consensus 538 l~Gyl~~li~~kw~~~~~~~~~~~p~il~~li~m~l~~~~~---~~~~~~q~~~~~~l~~~~~~~vp~~l~~~p~~~~~~ 614 (759)
T PF01496_consen 538 LFGYLVFLIIYKWLTPWFADSICAPSILIGLINMFLFPGTV---QPLYPGQSTVQVILLLIALISVPWMLLPKPLILKRK 614 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhcccCCchHHHHHHHhhcCCCCh---hhhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999973 5799999999999999852 789999999999999999999999999999998777
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhHHHHHHHHH
Q 003392 669 HQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYE 748 (823)
Q Consensus 669 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ie~vl~~lsntlSYlRL~Al~LAh~~La~vf~~ 748 (823)
+++.... ..+.+.++.+.. ..++.+.+++++++|+++||+||+||+++|++|||+||+|||||||||++||.|||.
T Consensus 615 ~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~sy~Rl~a~~la~~~l~~~~~~ 690 (759)
T PF01496_consen 615 HKKKQEK---EDLLEEEEEESE-SQEDEEEHEEFDFGEIFIHQGIETIEFVLGCISNTLSYLRLWALSLAHAQLSEVFNE 690 (759)
T ss_dssp --------------------------------------------------SSSTTTTCHHHHHCHHHHCHHHHCCS----
T ss_pred hhhhccc---cccccccccccc-cccccccccchhHHHHHHHHHHHHHHHHHhhhcchHhHHHHHHHhhhHHHHHHHHHH
Confidence 6553100 011111111111 111222356678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCc-hhhHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhheeeecccccccCCccccccccc
Q 003392 749 KVLLLAWGYNN-ILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFSFA 816 (823)
Q Consensus 749 ~~~~~~~~~~~-~~~~i~~~~v~~~~~~~il~~le~L~~fiH~lRL~~vEFf~KFY~G~G~~F~Pf~~~ 816 (823)
|+.+.+.+.++ +++.+++++++++++++++++||+|+||||+|||||||||||||+|+||+|+||+++
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lRL~~~E~~~kfy~g~g~~f~p~~~~ 759 (759)
T PF01496_consen 691 MALMLGLSSGGVPIAGIIGFIIIAILGHAILIGMEGLSAFLHALRLHWVEFFSKFYEGGGRPFEPFSFK 759 (759)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCeecCCCCCC
Confidence 99987765554 444555556666667889999999999999999999999999999999999999975
No 3
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=100.00 E-value=2.2e-98 Score=892.33 Aligned_cols=638 Identities=23% Similarity=0.307 Sum_probs=473.0
Q ss_pred ccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 003392 20 RSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTT 99 (823)
Q Consensus 20 RSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~ 99 (823)
++++|+|++++++++.+++++++||++|+||++|.+.+.+.. ...+..++++++.+.+++++++.++.+.... ...+
T Consensus 2 ~i~kM~kv~l~~~~~~~~~~l~~L~~lg~vhi~~~~~~~~~~--~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~-~~~~ 78 (646)
T PRK05771 2 APVRMKKVLIVTLKSYKDEVLEALHELGVVHIEDLKEELSNE--RLRKLRSLLTKLSEALDKLRSYLPKLNPLRE-EKKK 78 (646)
T ss_pred CceeeEEEEEEEEHHHHHHHHHHHHhCCCEEEeecccccchh--HHhHHHHHHHHHHHHHHHHHHhccccccchh-hhcc
Confidence 689999999999999999999999999999999998765422 2233455677778888888887776554321 1112
Q ss_pred CCCCCHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhhhhccCCCCcC
Q 003392 100 RADNNTDD----LEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIE 175 (823)
Q Consensus 100 ~~~~~l~e----le~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 175 (823)
.+..+.++ .+++++++++++.++.+++++|+++++++++....|++..++ +
T Consensus 79 ~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~~l-d------------------------ 133 (646)
T PRK05771 79 VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNF-D------------------------ 133 (646)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-C------------------------
Confidence 23334443 355777888888888888888888888888777766654443 1
Q ss_pred CCCccccccCCCCCCcceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEeChhh
Q 003392 176 TPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYSGERA 255 (823)
Q Consensus 176 ~~ll~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~vv~~~~~~~ 255 (823)
.++.. -...+++.+..|++|+++.++.+. .....++.. . .+.++.++++++++++.
T Consensus 134 ~~l~~-------~~~~~~~~~~~G~i~~~~~~~~~~-----~~~~~~~~~----------~--~~~~~~~~~vvv~~~~~ 189 (646)
T PRK05771 134 LDLSL-------LLGFKYVSVFVGTVPEDKLEELKL-----ESDVENVEY----------I--STDKGYVYVVVVVLKEL 189 (646)
T ss_pred CCHHH-------hCCCCcEEEEEEEecchhhhhHHh-----hccCceEEE----------E--EecCCcEEEEEEEEhhh
Confidence 22110 011457899999999988776321 111111110 0 01135677888878888
Q ss_pred HHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 003392 256 KNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNM 335 (823)
Q Consensus 256 ~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l~~ 335 (823)
.+++.++|++++|+++++|+ .++|++.++++++++++++++++++++++++..++....+..|+..+..++..+++.+
T Consensus 190 ~~~~~~~l~~~~f~~~~~p~-~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 267 (646)
T PRK05771 190 SDEVEEELKKLGFERLELEE-EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALS- 267 (646)
T ss_pred HHHHHHHHHHCCCEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 89999999999999999998 7899999999999999999999999999999998888888889999999999999988
Q ss_pred ccccccCcEEEEEEEeecCCHHHHHHHHHhhhhcCCCceEEEEEec-CCCCCCCcccccccchhhHHHHHHhccCCCCCc
Q 003392 336 LSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVL-HTKESPPTYFRTNKFTSAFQEIVDAYGVAKYRE 414 (823)
Q Consensus 336 ~~~~~t~~~~~~~GWvP~~~~~~l~~~l~~~~~~~~~~v~~~~~~~-~~~~~pPt~l~n~~~~~pFe~iv~~Yg~P~Y~E 414 (823)
++..|+++++++||||+++++++++.+++.+.+ .+.....++ +++++|||+++||+|++|||.+|+|||+|+|+|
T Consensus 268 -~~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~~---~~~v~~~~~~~~~~~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~E 343 (646)
T PRK05771 268 -KFLKTDKTFAIEGWVPEDRVKKLKELIDKATGG---SAYVEFVEPDEEEEEVPTKLKNPKFIKPFESLTEMYSLPKYNE 343 (646)
T ss_pred -hhhcCCcEEEEEEEeehhHHHHHHHHHHHhcCC---cEEEEEeCCCCcCCCCCEEeeCCchhhhHHHHHHHcCCCCCCC
Confidence 567789999999999999999999999996432 233455566 466899999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHHHHHHHHHHHHHHhccccc
Q 003392 415 ANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFSIYTGLIYNEFFS 494 (823)
Q Consensus 415 iDPt~~~ai~Fp~fFG~MfGD~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~gr~il~~~gi~si~~G~lyg~fFG 494 (823)
+||||++|+|||+||||||||+|||++++++|+++.++.++.. .++...++++++||++||+||++||||||
T Consensus 344 iDPT~~~ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~~k~~--------~~~~~~~~il~~~gi~sii~G~lyG~fFG 415 (646)
T PRK05771 344 IDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKKS--------EGLKRLLKILIYLGISTIIWGLLTGSFFG 415 (646)
T ss_pred cCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 9999999999999999999999999999999998876522211 12345578999999999999999999999
Q ss_pred cccccccccccccccCCCCcccccccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003392 495 VPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNATF 574 (823)
Q Consensus 495 ~~~~~fg~s~~~~~~~~~~~~~~~g~~~~~~~~~fg~dp~w~~~~~~l~f~ns~~m~~si~iGv~~~~~g~~l~~~n~~~ 574 (823)
.+++.++ ..|. +++..++.|..+.+.. ..+|++|+++|++||++|++++++|++|
T Consensus 416 ~~~~~~~-~~~~--------------------~~~~~~~~~~~~~~~~----~~~l~lsl~iGvi~i~~g~~l~~~~~~~ 470 (646)
T PRK05771 416 FSLPIFL-PGGY--------------------LELPEGYPSLSTENDV----MTILIISLLIGVIHLFLGLLLGFINNVR 470 (646)
T ss_pred Ccccccc-cccc--------------------ccccCCccccCCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765442 2111 1122223343333322 1478999999999999999999999999
Q ss_pred cCCchhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhhcCCCCCCCCCccCCchhhHHHHHHHHHHHHh
Q 003392 575 FRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPGQKTAQLVLLLLAFVSV 654 (823)
Q Consensus 575 ~~~~~~~~~~~~~~~l~~~~~~gyl~~~i~~~w~~~~~p~l~~~~i~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~v 654 (823)
+|++.+++++.+||+++++|++.++...+. +... ..+. ..+..++++++++++
T Consensus 471 ~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~--~~~~------------------------~~~~-~~~~~~~~~~g~~~~ 523 (646)
T PRK05771 471 KGDYKDAFLAQLGWLLILLGILLIVLGGFG--LVVG------------------------LGPL-GLIGKYLIIGGVVLI 523 (646)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhcc------------------------chHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999887644321110 0000 0000 001122233333221
Q ss_pred hhhccchhhhhhhcccccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 003392 655 PWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEFVLGAVSNTASYLRLWA 734 (823)
Q Consensus 655 ~~~l~~~pl~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ie~vl~~lsntlSYlRL~A 734 (823)
+....+ .++. .+..+. +.+.++ +++++|||+||+||+|
T Consensus 524 ---------~~~~~~----~~~~--------------------------~~~~~~--~~~~~~-~~~~~~d~lSY~RL~A 561 (646)
T PRK05771 524 ---------ILGEGI----DGKS--------------------------LGGALG--GLGLYE-ITGYLGDVLSYARLMA 561 (646)
T ss_pred ---------HHhcch----hccc--------------------------cchhhh--hhhHHH-HHHHHHHHHHHHHHHH
Confidence 111000 0000 011111 334444 6679999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhheeeecccccccCCccccccc
Q 003392 735 LSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFSPFS 814 (823)
Q Consensus 735 l~LAh~~La~vf~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~il~~le~L~~fiH~lRL~~vEFf~KFY~G~G~~F~Pf~ 814 (823)
+||||++||.|||.|+.+++. ..+++..+++++++++| |.+|++|++|++|||++||||||||||||+|+|++|+||+
T Consensus 562 lgLa~~~ia~~~n~la~~~~~-~~~~~~~i~~ili~v~G-h~~ni~L~~L~~~vh~lRL~yvEff~kfyeg~G~~f~Pf~ 639 (646)
T PRK05771 562 LGLAGAGIAMAFNLMAGLLPP-SIGVIGIIVGIIIFIFG-HLLNIALSILGAFVHGLRLHYVEFFGKFYEGGGKKFNPFK 639 (646)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCCeecCCcc
Confidence 999999999999999986643 23455556666666665 4478899999999999999999999999999999999999
Q ss_pred ccccc
Q 003392 815 FALLD 819 (823)
Q Consensus 815 ~~~~~ 819 (823)
.++..
T Consensus 640 ~~~ky 644 (646)
T PRK05771 640 AIRKY 644 (646)
T ss_pred ccccc
Confidence 87654
No 4
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=100.00 E-value=1.9e-91 Score=825.75 Aligned_cols=638 Identities=28% Similarity=0.413 Sum_probs=478.3
Q ss_pred cccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhhh------------hhHHHHHHHHHHHHHHHHHHHHH
Q 003392 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQR------------TYAAQIKKCAEMARKLRFFKEQM 86 (823)
Q Consensus 19 fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r------------~~~~~i~r~eE~~~kl~~l~~~l 86 (823)
+|+++|+|+.++.+++..++++++||+.|++|++|.+.+...... ..++.+.+..+..+++..+.+..
T Consensus 1 ~~~~~M~kv~i~~~~~~~~~vi~~L~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~l~~~~ 80 (660)
T COG1269 1 MRPEKMKKVSIIGLKSELDPVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRL 80 (660)
T ss_pred CchhhheeEEEEeehhhhhHHHHHHHHcCeEEeeccccccccccccccchhhhhhccchhhhhhHHHHHHHHHHHHhhhh
Confidence 489999999999999999999999999999999999875432221 11112224444455555544322
Q ss_pred HHcCCCCCC-CCCCCCCCCHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHh
Q 003392 87 LKAGILSSV-KSTTRADNNTD----DLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQ 161 (823)
Q Consensus 87 ~k~~i~~~~-~~~~~~~~~l~----ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l~~~~~~~~~~~ 161 (823)
. ..++. ........++. +.++...+++++.+...++.++++++++++......++....+ +
T Consensus 81 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~---------- 146 (660)
T COG1269 81 F---ILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYL-D---------- 146 (660)
T ss_pred h---cccccchhHHHhhhhHHHHHHHHHHHHHhhhHHHHhHHHHHHHHhhhHHHHHHHHHHhhhhhcc-c----------
Confidence 1 11100 00000111111 2222222334444444444445555555444444433322222 1
Q ss_pred hhhhhhccCCCCcCCCCccccccCCCCCCcceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCccc
Q 003392 162 REMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKM 241 (823)
Q Consensus 162 ~~~~~i~~~~~~~~~~ll~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~ 241 (823)
.+..++. +.+...+..|..+.+..+.+.+.+-+.. ..+ .+..
T Consensus 147 ------------~~~~~l~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~----~~~~ 188 (660)
T COG1269 147 ------------FDLSLLR---------GLKFLLVRLGLVRREKLEALVGVIEDEV-------------ALY----GENV 188 (660)
T ss_pred ------------hhhHhhc---------ccceEEEEeeeehhhhhhHHHhhccccc-------------chh----hhcc
Confidence 1222221 1456778888888888887765431100 000 0122
Q ss_pred ceEEEEEEEeChhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 242 EKNVFVVFYSGERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNL 321 (823)
Q Consensus 242 ~k~v~vv~~~~~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 321 (823)
.+.+++++.+.++...++.+++++.+++.+++|+....|.+.+.++++++++.++++++++++++...+++.+.+..|+.
T Consensus 189 ~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 268 (660)
T COG1269 189 EASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVRE 268 (660)
T ss_pred ccceEEEEEecccchHHHHHHHHhCCcEEeeccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999999998878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccCcEEEEEEEeecCCHHHHHHHHHhhhhcCCCceEEEEEecCCC---CCCCcccccccchh
Q 003392 322 LVKKEKSIYHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTK---ESPPTYFRTNKFTS 398 (823)
Q Consensus 322 ~~~~ek~i~~~l~~~~~~~t~~~~~~~GWvP~~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~---~~pPt~l~n~~~~~ 398 (823)
.+..|+.+++..+ ++..|+++++++||||+++++++++.+++++++ .+.++..+++ ++|||+++||+|++
T Consensus 269 ~l~~e~~~~~~~~--~~~~t~~~~~~eGWvP~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~e~~Pt~l~n~~~i~ 341 (660)
T COG1269 269 ILEIEKALGDVLS--KLARTEYTLAIEGWVPADEVEKLKKIINRATGG-----AAYFEVSETDEDKEEVPTKLRNPKFIS 341 (660)
T ss_pred HHHHHHHHHHHHH--HhhccceEEEEEEeccHHHHHHHHHHHHHhcCC-----ceEEEeecCCCccCCCCEeecCCcccc
Confidence 9999999999999 566777899999999999999999999997652 2445544444 89999999999999
Q ss_pred hHHHHHHhccCCCCCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHHHH
Q 003392 399 AFQEIVDAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMM 478 (823)
Q Consensus 399 pFe~iv~~Yg~P~Y~EiDPt~~~ai~Fp~fFG~MfGD~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~gr~il~~~ 478 (823)
|||.+|+|||+|+|+|||||+++++|||+|||+||||+|||++++++|+++.++.++......+++ ..+++++
T Consensus 342 ~Fe~l~emY~iPkY~EidPt~~~a~~Fp~fFG~M~gD~gyGlll~l~sl~l~~~~~~~~~~~~~~l-------~~~~~~~ 414 (660)
T COG1269 342 PFESLTEMYGIPKYGEIDPTPFLALFFPLFFGIMFGDLGYGLLLFLISLLLLRYFKKRLPEGLKKL-------GKILLYL 414 (660)
T ss_pred hHHHHHHHhcCCCCCCcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccchhHHHH-------HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877543111122222 2478999
Q ss_pred HHHHHHHHHHhccccccccccccccccccccCCCCcccccccccccCcccccccCCCcCCCCCccccchhhHHHHHHHHH
Q 003392 479 ALFSIYTGLIYNEFFSVPFEIFSHSAYACRDLSCSEATTVGLIKVRDTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGV 558 (823)
Q Consensus 479 gi~si~~G~lyg~fFG~~~~~fg~s~~~~~~~~~~~~~~~g~~~~~~~~~fg~dp~w~~~~~~l~f~ns~~m~~si~iGv 558 (823)
|++|++||++||+|||.+. .+ ..+|++++..|++..+.+.+ +++|++|+.+|+
T Consensus 415 ~i~t~i~G~l~g~~fG~~~-~~------------------------~~~p~~~~~~~~~~~~~~~~--~~~m~~sl~iG~ 467 (660)
T COG1269 415 GISTIIWGFLYGEFFGPAV-LL------------------------STLPIGLLFVYHGLDEGLLF--SNILILSLLIGV 467 (660)
T ss_pred HHHHHHHHHHhccccCCcc-cc------------------------ccCCcccccccccccchhhH--HHHHHHHHHHHH
Confidence 9999999999999999411 01 14677888888887776666 669999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHhhcCCCCCCCCCccCCc
Q 003392 559 AQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITGSQADLYHVMIYMFLSPTDELGDNQLFPG 638 (823)
Q Consensus 559 ~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~gyl~~~i~~~w~~~~~p~l~~~~i~~~l~~~~~~~~~~~~~g 638 (823)
+||++|++++++|.++.+++.+++.+. ++++.+++|++.+++.++|+. |.++++.++++..+|.
T Consensus 468 ~hl~~G~~lg~~~~~~~~~~~~a~~~~---~~w~~~~~G~~~~~~~~~~~~---~~l~~~~~~~~~~~g~---------- 531 (660)
T COG1269 468 LHLSLGLLLGFINRVRSGDIKGAILPQ---LLWLLIILGLLLLILGYKWSV---PELLGMVGAMFGAFGI---------- 531 (660)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhhhh---HHHHHHHHHHHHHHHHhhhcc---cchhhHHHHHhhhccH----------
Confidence 999999999999999988877776554 445555678888888888986 7888888777776652
Q ss_pred hhhHHHHHHHHHHHHhhhhccchhhhhhhcccccccccccccccccccCCCCCCCCCCCCCccchhHHHHHHHHHHHHHH
Q 003392 639 QKTAQLVLLLLAFVSVPWMLLPKPFILKMQHQDRHQGQSYEALQSTDESLQPDTNHDSHGHEEFEFSEVFVHQMIHTIEF 718 (823)
Q Consensus 639 ~~~~~~~l~~~~~~~v~~~l~~~pl~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ie~ 718 (823)
..++++++++++ +...++++++++++
T Consensus 532 -----~~llvv~~i~~~-------------------------------------------------~~~~~~~~i~~~~~ 557 (660)
T COG1269 532 -----LGLLVVGLILVP-------------------------------------------------GLVAIGQGILGFEG 557 (660)
T ss_pred -----HHHHHHHHHHcc-------------------------------------------------hHHHHHhhHHHHHH
Confidence 113334433332 12346678899999
Q ss_pred HhhhchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhheeee
Q 003392 719 VLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLLAWGYNNILILIVGIIVFIFATVGVLLVMETLSAFLHALRLHWVEF 798 (823)
Q Consensus 719 vl~~lsntlSYlRL~Al~LAh~~La~vf~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~il~~le~L~~fiH~lRL~~vEF 798 (823)
+++++||++||+||||+||||++||.++|.|+.....+. +.++++|++++++| |.++++|++|+++||+||||||||
T Consensus 558 ~~~~~s~i~SY~RL~Al~La~~~ia~~~n~m~~~~~~~~--~~~~i~giii~i~G-h~~n~~l~il~~~vH~lRLh~VEf 634 (660)
T COG1269 558 VLSLLSDVLSYLRLLALGLAGASIASVVNLMTGLLIGSV--PFGIILGIIILIFG-HLLNIALSILGAGVHGLRLHYVEF 634 (660)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765432 22256666766666 447789999999999999999999
Q ss_pred cccccccCCccccccccccccCcC
Q 003392 799 QNKFYEGDGYKFSPFSFALLDDED 822 (823)
Q Consensus 799 f~KFY~G~G~~F~Pf~~~~~~~~~ 822 (823)
|||||+|+||+|+||+.++..++.
T Consensus 635 fskFyeG~G~~f~Pf~~~~~~~~~ 658 (660)
T COG1269 635 FSKFYEGGGRKFEPFRAERNYTEI 658 (660)
T ss_pred hcccccCCCcCCCccccccccccc
Confidence 999999999999999999876654
No 5
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=93.51 E-value=0.33 Score=52.11 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=65.2
Q ss_pred ceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 003392 25 QLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNN 104 (823)
Q Consensus 25 ~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~ 104 (823)
..+.+=+|.+..++++++|.++|.|.-.+.+.+ ....+|.+.-.|++.++...+-+.+.+++.+ +
T Consensus 96 ~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~--DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-------------~ 160 (262)
T PF14257_consen 96 ASLTIRVPADKFDSFLDELSELGKVTSRNISSE--DVTEQYVDLEARLKNLEAEEERLLELLEKAK-------------T 160 (262)
T ss_pred EEEEEEECHHHHHHHHHHHhccCceeeeecccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------C
Confidence 478899999999999999999997777666543 4455666655666666666666666665432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
+++ +-+++++|.++..+++.++.+++.+.+.
T Consensus 161 ~~d----~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 161 VED----LLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 2346666677777777777777766554
No 6
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=89.76 E-value=40 Score=38.10 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=75.2
Q ss_pred cceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEE-EEEEeChhhHHHHHHhhhccCcE
Q 003392 191 QIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVF-VVFYSGERAKNKILKICDAFGAN 269 (823)
Q Consensus 191 ~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~-vv~~~~~~~~~~v~~i~~~~~~~ 269 (823)
+.++..++=.||+.....|.+.- +..-..+.-+.. ..+ . ++.+...| |++| +...++...-|++-+|.
T Consensus 177 SEyL~Tl~VvVPk~~~~ewl~~Y-EtL~~~VVPrSs----~~i---~-eD~ey~L~~VtlF--kk~~~eF~~~~re~kf~ 245 (371)
T PF03223_consen 177 SEYLTTLLVVVPKNSVKEWLKSY-ETLTDMVVPRSS----KKI---A-EDSEYVLFSVTLF--KKVVDEFKNKCREKKFI 245 (371)
T ss_dssp -SSEEEEEEEEEGGGHHHHHHHG-GGSSTTB-TT------EEE---E-E-SSEEEEEEEEE--GGGHHHHHHHHHHTT-E
T ss_pred cccceEEEEEechhhHHHHHHHH-hccCCccCCChH----Hhh---h-cCCCeEEEEEEEE--eccHHHHHHHHHHcCCe
Confidence 45777888899999999998763 333222110000 000 0 11123333 4444 56677788888887877
Q ss_pred EeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhccccccccCcEEEE
Q 003392 270 RYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTI-GDQFEQWNLLVKKEKS-IYHTLNMLSLDVTKKCLVG 347 (823)
Q Consensus 270 ~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~-~~~l~~~~~~~~~ek~-i~~~l~~~~~~~t~~~~~~ 347 (823)
.=++--+ ++..++..+++++++.+.++....+...++.. .+....|.- +.-.+. +..+| +++---++..+
T Consensus 246 vRdF~y~----ee~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiH-lKalRvFVESVL---RYGLP~~F~a~ 317 (371)
T PF03223_consen 246 VRDFKYD----EEESEEEKEEREKLETEEKKQWGELLRWCKTNFSEAFSAWIH-LKALRVFVESVL---RYGLPPNFQAF 317 (371)
T ss_dssp EE---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HH-SS--EEEE
T ss_pred eeecccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhhh---hcCCCCCceEE
Confidence 5554222 22334445555555555554444444444432 233334432 211111 22233 34433343344
Q ss_pred EEEeecCCHHHHHHHHHhhhh
Q 003392 348 EGWSPVFATKQIQDALERAAF 368 (823)
Q Consensus 348 ~GWvP~~~~~~l~~~l~~~~~ 368 (823)
-=....+..+++++.|.+.-.
T Consensus 318 ll~p~~k~~kKl~~~L~~~f~ 338 (371)
T PF03223_consen 318 LLKPNKKKEKKLRKELNKLFG 338 (371)
T ss_dssp EEEE-TT-HHHHHHHHHHHHG
T ss_pred EEEeCCchHHHHHHHHHHHhc
Confidence 444556788999999988654
No 7
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=82.89 E-value=13 Score=45.42 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=54.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHhhhhhhhccCCCCcCCCCc
Q 003392 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE-YKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLL 179 (823)
Q Consensus 101 ~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e-~~~vL~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ll 179 (823)
++..+++++++++++++++.++.++++++.+++.++.. +...+....+..+.. .. .
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------~~-~ 269 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEAL----------------------SK-F 269 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------Hh-h
Confidence 34456666666666666666666666666655544433 333333222211100 00 0
Q ss_pred cccccCCCCCCcceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEe
Q 003392 180 TDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQ 225 (823)
Q Consensus 180 ~~~e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~ 225 (823)
..+.++-++-|-||.++.+++++.+.+...+.+++..
T Consensus 270 ---------~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~~~~~v~~ 306 (646)
T PRK05771 270 ---------LKTDKTFAIEGWVPEDRVKKLKELIDKATGGSAYVEF 306 (646)
T ss_pred ---------hcCCcEEEEEEEeehhHHHHHHHHHHHhcCCcEEEEE
Confidence 0134677889999999999999999887766555543
No 8
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=73.00 E-value=1.8e+02 Score=35.07 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFF 150 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l 150 (823)
++++++++.+..++.++.++.++.+.+..++++...+.+++..++
T Consensus 345 ~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 345 EELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555566666666666666666666666666666555554443
No 9
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=70.91 E-value=21 Score=31.49 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHHHHHH
Q 003392 552 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLS 600 (823)
Q Consensus 552 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~gyl~ 600 (823)
-.++.|++.+.++.++.+++.-|.++..+-....++.+-|..|++.-+.
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG 61 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLG 61 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999887766666777777666554333
No 10
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=67.95 E-value=28 Score=28.01 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
++++|+++.+++..+..+..+.+++++..+++++.-
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777776644
No 11
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=65.34 E-value=52 Score=40.22 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=29.2
Q ss_pred eEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeec
Q 003392 193 KLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAV 227 (823)
Q Consensus 193 ~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~ 227 (823)
+....-|-||.++..++++.+.+++.+.+++...+
T Consensus 288 ~~~~~eGWvP~~~~~~~~~~i~~~~~~~~~~~~~~ 322 (660)
T COG1269 288 YTLAIEGWVPADEVEKLKKIINRATGGAAYFEVSE 322 (660)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHhcCCceEEEeec
Confidence 67789999999999999999998887777765433
No 12
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.28 E-value=48 Score=34.27 Aligned_cols=88 Identities=7% Similarity=0.105 Sum_probs=42.2
Q ss_pred cCcEEEecCCCCCChhhhhh----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 003392 46 LGLLQFKDLNSEKSPFQRTY----AAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVE 121 (823)
Q Consensus 46 lg~Vqf~Dln~~~~~~~r~~----~~~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~ 121 (823)
-|.+|++|-+...-=....+ .....|+.++++++.-+++.+....-. -.....++++++++.++++.+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~--------~~~~~~~l~~~~~~~~~~~~~ 136 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT--------WNQRTAEMQQKVAQSDSVING 136 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 36888887654321111111 223455666777777776666542100 112224444444444455555
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q 003392 122 INANGDKLQRAHSELVEYKL 141 (823)
Q Consensus 122 l~~~~~~L~~~~~~l~e~~~ 141 (823)
+.++.++|++++.++.....
T Consensus 137 L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444433
No 13
>PRK11637 AmiB activator; Provisional
Probab=58.01 E-value=46 Score=38.34 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
+++++++++.++.++++++++++.++
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 14
>PRK11637 AmiB activator; Provisional
Probab=56.07 E-value=1.2e+02 Score=34.88 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
+.+++++++.++++.+..++++++++++++++.
T Consensus 78 ~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 78 KKQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443333
No 15
>PRK02302 hypothetical protein; Provisional
Probab=53.89 E-value=14 Score=32.74 Aligned_cols=52 Identities=8% Similarity=0.210 Sum_probs=40.3
Q ss_pred cccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHH
Q 003392 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKK 71 (823)
Q Consensus 19 fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r 71 (823)
.=|.+|+++.|++..+.++++++.|.++..|.=++.+.. +..+..|...+-|
T Consensus 31 Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~~-~~l~~~f~~~l~r 82 (89)
T PRK02302 31 YHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAI-DEIDQNFVGNLYR 82 (89)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEcccCc-hhccchhhhhhhc
Confidence 348899999999999999999999999999988877652 2233355554444
No 16
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=50.74 E-value=1.9e+02 Score=35.55 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------h------ccc----cccc
Q 003392 281 AQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHT----------L------NML----SLDV 340 (823)
Q Consensus 281 ~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~----------l------~~~----~~~~ 340 (823)
...+.+++++++++++++.+..+...++.+++ .++.+++..+++-..-... . ... .-..
T Consensus 91 ~~~i~dle~~l~klE~el~eln~n~~~L~~n~-~eL~E~~~vl~~t~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (829)
T KOG2189|consen 91 PREIIDLEEQLEKLESELRELNANKEALKANY-NELLELKYVLEKTDEFFSTSVQESFEDDETADLGEGPLESAEKGPFD 169 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHhhhhhcccchhhhhcchhhhhhcccccchhccCCCC
Confidence 45667888888888888876655443333322 3344444444433211110 0 000 0011
Q ss_pred cCcEEEEEEEeecCCHHHHHHHHHhhhhcC
Q 003392 341 TKKCLVGEGWSPVFATKQIQDALERAAFDS 370 (823)
Q Consensus 341 t~~~~~~~GWvP~~~~~~l~~~l~~~~~~~ 370 (823)
+.+.-.+.|=||.+++..+++.|-++++++
T Consensus 170 ~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn 199 (829)
T KOG2189|consen 170 GLKLGFVAGVINREKVFAFERMLWRACRGN 199 (829)
T ss_pred cccceeEEeeechhHHHHHHHHHHHHhccc
Confidence 123346789999999999999999998764
No 17
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=50.47 E-value=15 Score=31.19 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=33.7
Q ss_pred cccccCceEEEEeccccHHHHHHHhhccCcEEEecCCC
Q 003392 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNS 56 (823)
Q Consensus 19 fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~ 56 (823)
+-|.+|..+.|++..+.++++++.|.++..|.=+..+.
T Consensus 25 Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 62 (71)
T PF09902_consen 25 YVSKKMKYVVLYVNEEDVEEIIEKLKKLKFVKKVEPSP 62 (71)
T ss_pred EEECCccEEEEEECHHHHHHHHHHHhcCCCeeEEeccC
Confidence 56899999999999999999999999999887666543
No 18
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.88 E-value=5.1e+02 Score=33.55 Aligned_cols=13 Identities=23% Similarity=0.056 Sum_probs=6.1
Q ss_pred cccHHHHHHHhhc
Q 003392 33 IESAHLTVSYLGE 45 (823)
Q Consensus 33 ~e~a~~~v~~Lg~ 45 (823)
++....+=++|++
T Consensus 777 ~~~v~~le~~l~~ 789 (1293)
T KOG0996|consen 777 KESVEKLERALSK 789 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455544
No 19
>PRK10692 hypothetical protein; Provisional
Probab=49.84 E-value=62 Score=28.45 Aligned_cols=49 Identities=22% Similarity=0.345 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003392 552 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITG 610 (823)
Q Consensus 552 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~gyl~~~i~~~w~~~ 610 (823)
+-..+|.+-|..|+..++.|.+-.=+ +|+++.-.++++..+.++ -|+++
T Consensus 12 ~lMglGmv~Mv~gigysi~~~i~~L~--------Lp~~~~~gal~~IFiGAl--lWL~G 60 (92)
T PRK10692 12 VLMGLGLVVMVVGVGYSILNQLPQLN--------LPQFFAHGALLSIFVGAL--LWLAG 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC--------chHHHHhhHHHHHHHHHH--HHHhc
Confidence 45678999999999999999877554 466666556665433332 37664
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.80 E-value=1.2e+02 Score=30.19 Aligned_cols=92 Identities=14% Similarity=0.273 Sum_probs=52.6
Q ss_pred eccccHHHHHHHhhccCcEEEecCC--------CCCC---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003392 31 IPIESAHLTVSYLGELGLLQFKDLN--------SEKS---------PFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILS 93 (823)
Q Consensus 31 ~~~e~a~~~v~~Lg~lg~Vqf~Dln--------~~~~---------~~~r~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~ 93 (823)
+++..+-.+++.|.+-|-+...+.- ++.. .++......-.++.++....+-++.++....
T Consensus 30 ~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~--- 106 (169)
T PF07106_consen 30 VGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLS--- 106 (169)
T ss_pred ccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3456677788999999988877641 1111 1111112222233333344444444443321
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003392 94 SVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRA 132 (823)
Q Consensus 94 ~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~ 132 (823)
...+.+++.+.++++++++..+.++++.|++.
T Consensus 107 -------~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 107 -------SEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33356788888888888888888888877763
No 21
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=46.39 E-value=80 Score=39.33 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=17.7
Q ss_pred eEEEEEEEEcCCCHHHHHHHHHHhhc
Q 003392 193 KLGFIAGLVPREKSMSFERMLFRATR 218 (823)
Q Consensus 193 ~~~~~~G~I~~~~~~~f~~~l~r~~~ 218 (823)
++-+.-|-||.++.+++++.+.+.+.
T Consensus 289 ~~~~~~GWvP~~~~~~l~~~l~~~~~ 314 (759)
T PF01496_consen 289 NVFILEGWVPEKDVEELKKALEEATD 314 (759)
T ss_dssp -SEEEEEEE-TTTHHHHHHT--SS-E
T ss_pred cEEEEEEeccHHHHHHHHHHHHhhcc
Confidence 56688999999999999988754443
No 22
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.43 E-value=2.7e+02 Score=26.06 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
+++...++.+.+++..+.++++.++..+.++...++.|+.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888877766655543
No 23
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.25 E-value=56 Score=38.70 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 101 ~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
+...+...+..+++++.++.+.....+.|+++++++...+
T Consensus 472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666665443
No 24
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.73 E-value=2.7e+02 Score=25.81 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
+++....+.+.+++..+.+..++++..+.+++.-+..++.
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777778888888888888777777766655443
No 25
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=42.89 E-value=79 Score=27.66 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003392 552 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLIILKWITG 610 (823)
Q Consensus 552 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~gyl~~~i~~~w~~~ 610 (823)
+-..+|.+-|..|+..++.|.+-.=+ +|+++.-.++++..+.++ -|+++
T Consensus 12 ~lMglGmv~Mv~gigysi~~~~~~L~--------Lp~~~~~gal~~IFiGAl--lWL~G 60 (89)
T PF10762_consen 12 VLMGLGMVVMVGGIGYSILSQIPQLG--------LPQFLAHGALFSIFIGAL--LWLVG 60 (89)
T ss_pred HHHHHhHHHHHHhHHHHHHHhcccCC--------CcHHHHhhHHHHHHHHHH--HHHhc
Confidence 45578999999999999999877654 466655555555433332 36664
No 26
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=42.73 E-value=51 Score=25.35 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQR 131 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~ 131 (823)
.|.+|+.++++++++.++.++.+.|-.
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555554444433
No 27
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.73 E-value=3.8e+02 Score=32.13 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=44.0
Q ss_pred eCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcEEEEEEEe
Q 003392 272 PFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTLNMLSLDVTKKCLVGEGWS 351 (823)
Q Consensus 272 ~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l~~~~~~~t~~~~~~~GWv 351 (823)
.-..++-..++.+.++++++.+++..++++=.-..+.-..+...+..+. .-|..+. ..+ |.+...=
T Consensus 184 t~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~-------~gy~~m~-----~~g--y~l~~~~ 249 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELK-------EGYREME-----EEG--YYLEHLD 249 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH-------HHHHHHH-----HCC--CCCCCCC
Confidence 3345566778888888888888888777544444333333333333332 2233222 111 3334444
Q ss_pred ecCCHHHHHHHHHhhh
Q 003392 352 PVFATKQIQDALERAA 367 (823)
Q Consensus 352 P~~~~~~l~~~l~~~~ 367 (823)
+.++++.+++.++++.
T Consensus 250 i~~~i~~i~~~l~~~~ 265 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEAL 265 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666643
No 28
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.18 E-value=1.8e+02 Score=27.40 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 100 RADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 100 ~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
.++...++|++..+.++-++..+....+++++++.++....
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888888888888776643
No 29
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=41.60 E-value=2.1e+02 Score=30.63 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 66 AAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 66 ~~~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
.+.+..++|++..++.|..+- ..+.+.+|-+|+.+.+..+.+.+-..+...|+++...|.|...-|++
T Consensus 14 ~~aLqKIqelE~QldkLkKE~------------qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 14 TRALQKIQELEQQLDKLKKER------------QQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 345666777777777665432 23667889999999999999999999999999999999999998888
Q ss_pred Hhhhhhh
Q 003392 146 AGEFFSS 152 (823)
Q Consensus 146 ~~~~l~~ 152 (823)
...-+.+
T Consensus 82 ~rqKlsh 88 (307)
T PF10481_consen 82 TRQKLSH 88 (307)
T ss_pred HHHHhhH
Confidence 8776554
No 30
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.38 E-value=1.3e+02 Score=24.27 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
+..++..++.+.++..++.+.++++++..+++.....+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666666655444
No 31
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.04 E-value=34 Score=40.68 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003392 67 AQIKKCAEMARKLRFFKEQML 87 (823)
Q Consensus 67 ~~i~r~eE~~~kl~~l~~~l~ 87 (823)
...+++++..+++..+++.+.
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~ 347 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKIS 347 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444
No 32
>PHA02898 virion envelope protein; Provisional
Probab=37.93 E-value=1.4e+02 Score=26.47 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHH
Q 003392 552 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLF 596 (823)
Q Consensus 552 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~ 596 (823)
-.++.|++.+..+-++.++..-|.++..|-....++-+-|.+|++
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgiv 57 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAII 57 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHHH
Confidence 478899999999999999998888876554455555555555544
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.93 E-value=96 Score=26.19 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
+.++..+++++++++.++.++.++|+++++.+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777777777777777777777776
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.80 E-value=1.5e+02 Score=30.71 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=43.6
Q ss_pred hccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 003392 44 GELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEIN 123 (823)
Q Consensus 44 g~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~ 123 (823)
|.-|.|+=..+....+.-. +....-++++++..+++-+.+......-... .........+++|+++-+++.+++..+.
T Consensus 75 G~~GWV~~~~Ls~~p~~~~-rlp~le~el~~l~~~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~L~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 75 GRTAWIPLKQLSTTPSLRT-RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQ-QKVAQSDSVINGLKEENQKLKNQLIVAQ 152 (206)
T ss_pred CCEEeEEHHHhcCCccHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999888876543222 3333334455555666656555443211100 0000111223445555555555555555
Q ss_pred hhHHHHHHHHHHHHH
Q 003392 124 ANGDKLQRAHSELVE 138 (823)
Q Consensus 124 ~~~~~L~~~~~~l~e 138 (823)
++.+.++.+.+++++
T Consensus 153 ~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 153 KKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444443
No 35
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.79 E-value=3.3e+02 Score=27.22 Aligned_cols=55 Identities=7% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhh
Q 003392 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELV--EYKLVLQKAGEFFSSALT 155 (823)
Q Consensus 101 ~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~--e~~~vL~~~~~~l~~~~~ 155 (823)
+..++.+++++++++.+++....+++..+++-.++.. +..++-+..+.+.+.|+.
T Consensus 114 s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk 170 (201)
T KOG4603|consen 114 SALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRK 170 (201)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999888766553 344554444555555554
No 36
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.71 E-value=50 Score=29.15 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=40.5
Q ss_pred ccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHHH
Q 003392 20 RSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKC 72 (823)
Q Consensus 20 RSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~ 72 (823)
=|.+++.+.|+++.+..+++++.|..+-+|-=++.+.- ..++.+|.++..+.
T Consensus 31 ~Skk~kY~vlYvn~~~ve~~~~kl~~~kfVK~V~~s~~-~~Lk~~f~~~~~~~ 82 (90)
T COG4471 31 VSKKSKYVVLYVNEQDVEQIVEKLSRLKFVKKVRVSHI-PYLKTEFEGNLHEA 82 (90)
T ss_pred EecceeEEEEEECHHHHHHHHHHHhhceeeeecccccc-HHHHhHHhhchhHH
Confidence 37899999999999999999999999999887776542 23455666655444
No 37
>PRK00295 hypothetical protein; Provisional
Probab=36.60 E-value=1.9e+02 Score=24.36 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 003392 72 CAEMARKLRFF 82 (823)
Q Consensus 72 ~eE~~~kl~~l 82 (823)
++++|-++-|.
T Consensus 7 i~~LE~kla~q 17 (68)
T PRK00295 7 VTELESRQAFQ 17 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 38
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.20 E-value=1e+02 Score=28.34 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
.+.+++++++++++++.++.++.++|+++++.+.+-...++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 56788888888888888888888888888888876433333
No 39
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.02 E-value=1.6e+02 Score=24.69 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 003392 71 KCAEMARKLRFFKE 84 (823)
Q Consensus 71 r~eE~~~kl~~l~~ 84 (823)
|+++++.++.|.++
T Consensus 5 Ri~~LE~~la~qe~ 18 (69)
T PF04102_consen 5 RIEELEIKLAFQED 18 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 40
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.97 E-value=7.3e+02 Score=29.02 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=12.7
Q ss_pred HHHHHHHHHHH-HHhcccccccc
Q 003392 476 LMMALFSIYTG-LIYNEFFSVPF 497 (823)
Q Consensus 476 ~~~gi~si~~G-~lyg~fFG~~~ 497 (823)
+.+|.+--=|| |+.|++||.+.
T Consensus 136 l~lGqaiGRiGnF~Nge~yG~pT 158 (460)
T PRK13108 136 VVLAQAIGRLGNYFNQELYGRET 158 (460)
T ss_pred HHHHHHHHHHHHHhcccccCCCC
Confidence 44555555556 45557888653
No 41
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.46 E-value=1.6e+02 Score=25.10 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 003392 71 KCAEMARKLRFF 82 (823)
Q Consensus 71 r~eE~~~kl~~l 82 (823)
|++++|-++.|.
T Consensus 9 Ri~~LE~~lafQ 20 (72)
T PRK02793 9 RLAELESRLAFQ 20 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 42
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.99 E-value=1.1e+03 Score=30.22 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 282 QAISEVSGRLSELKTTLDAGLLHRGNLLQTI 312 (823)
Q Consensus 282 ~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~ 312 (823)
..++++.+.+.++++++++...++.+.....
T Consensus 678 ~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~ 708 (1200)
T KOG0964|consen 678 SELKELQESLDEVRNEIEDIDQKIDQLNNNM 708 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666655544444444433
No 43
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.96 E-value=1.5e+02 Score=30.00 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~ 137 (823)
++.+++++++.+++.+...+.+.|+++.+.+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555544443
No 44
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=34.67 E-value=8.4e+02 Score=28.90 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=29.4
Q ss_pred hhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 253 ERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGN 307 (823)
Q Consensus 253 ~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~ 307 (823)
++..+.+..|.+.++....++ ...++.++++.+.+.+++++..+....+..
T Consensus 357 ~el~~~~~~i~~~~~~~~~~y----S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~ 407 (570)
T COG4477 357 KELESVLDEILENIEAQEVAY----SELQDNLEEIEKALTDIEDEQEKVQEHLTS 407 (570)
T ss_pred HHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455555655555554443 455666677777777777666655444444
No 45
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.35 E-value=2.9e+02 Score=25.33 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 70 KKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 70 ~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
.+.++..+++.-++..+... |...++.+|+-.+.+++-++..+..+++.+....+-|-|.
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~L----------Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHL----------PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777777766521 3445677777777777777777777777776666666553
No 46
>PRK04325 hypothetical protein; Provisional
Probab=34.31 E-value=1.7e+02 Score=25.01 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 003392 72 CAEMARKLRF 81 (823)
Q Consensus 72 ~eE~~~kl~~ 81 (823)
++++|.++-|
T Consensus 11 i~~LE~klAf 20 (74)
T PRK04325 11 ITELEIQLAF 20 (74)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 47
>PRK02886 hypothetical protein; Provisional
Probab=33.80 E-value=52 Score=29.15 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=34.4
Q ss_pred cccccCceEEEEeccccHHHHHHHhhccCcEEEecCCC
Q 003392 19 FRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNS 56 (823)
Q Consensus 19 fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~ 56 (823)
.=|-+|..+.|++..+.++++++.|.++..|.=++.+.
T Consensus 29 Y~Skr~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 66 (87)
T PRK02886 29 YVSKRLKYAVLYCDMEQVEDIMNKLSSLPFVKRVEPSY 66 (87)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEcccC
Confidence 34889999999999999999999999999998887765
No 48
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.63 E-value=35 Score=31.35 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred ccCceEEEEeccccHHHHHHHhhccCcEEEecCC
Q 003392 22 EPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLN 55 (823)
Q Consensus 22 e~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln 55 (823)
+.|.|+.+++|+++.+++-++|.+.|.-|+-|..
T Consensus 3 ~~~~K~~vyVP~~~~e~vr~aL~~aGag~iG~Y~ 36 (109)
T COG3323 3 EPLYKIEVYVPEEYVEQVRDALFEAGAGHIGNYD 36 (109)
T ss_pred cceeEEEEEeCHHHHHHHHHHHHhcCCcceeccc
Confidence 5799999999999999999999999999998864
No 49
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.87 E-value=1.2e+02 Score=28.02 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 102 ~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
.....++++.++.++.++..+.++.+.+++++.++...
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666667777777777777666666553
No 50
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.55 E-value=7.7e+02 Score=29.62 Aligned_cols=31 Identities=6% Similarity=0.215 Sum_probs=21.0
Q ss_pred eeCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 003392 271 YPFNEEFDKQAQAISEVSGRLSELKTTLDAG 301 (823)
Q Consensus 271 ~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~ 301 (823)
..-.+++-...+.+.+++.++.+++..++++
T Consensus 187 l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~i 217 (569)
T PRK04778 187 LTESGDYVEAREILDQLEEELAALEQIMEEI 217 (569)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777788888877777776644
No 51
>PF07666 MpPF26: M penetrans paralogue family 26; InterPro: IPR011655 These proteins include those ascribed to M penetrans paralogue family 26 in [].
Probab=32.55 E-value=2e+02 Score=27.61 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=52.8
Q ss_pred HhccCCCCCccCCcchhhHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhhhccccccchhhhchhhHHHHHHHHHHH-H
Q 003392 405 DAYGVAKYREANPGVFTIVTFPFLFAVMFGDWGHGICLLLGTLVLIVREKKLASQKLDDITDMTFGGRYVILMMALFS-I 483 (823)
Q Consensus 405 ~~Yg~P~Y~EiDPt~~~ai~Fp~fFG~MfGD~GyGlll~l~~~~l~~~~~~~~~~~~~~~~~~~~~gr~il~~~gi~s-i 483 (823)
+.+..+++.|.++++..+..-...+-+|+-|. ++++.++++..+..+.++.++... + .... ...+++..+|++= .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~l~igil~i~~~~i-~~i~~~Il~Ivl~iKis~~k~~~~-~-~~k~-~~~~iL~IIGi~i~~ 114 (130)
T PF07666_consen 39 KSNNTSNNYEEESSMSIGNLVIGILLIIFSGI-FYIVNFILGIVLIIKISSLKNKHP-E-FKKV-TVHKILLIIGIFISP 114 (130)
T ss_pred hhhccccccccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCc-c-cccc-hhhhhhhhhhhHHhh
Confidence 35557777777888877766666677777787 999999999999887665555321 1 1110 0123566677665 6
Q ss_pred HHHHHh
Q 003392 484 YTGLIY 489 (823)
Q Consensus 484 ~~G~ly 489 (823)
++++++
T Consensus 115 i~~ii~ 120 (130)
T PF07666_consen 115 ICSIID 120 (130)
T ss_pred HHHHHH
Confidence 666665
No 52
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=32.53 E-value=1.4e+02 Score=31.94 Aligned_cols=64 Identities=16% Similarity=0.347 Sum_probs=47.0
Q ss_pred hhhHHHHHHhhhccCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 253 ERAKNKILKICDAFGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLL 322 (823)
Q Consensus 253 ~~~~~~v~~i~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 322 (823)
...+.+.++.|.+.|..- -.....|.+.+.++.+++++++.+-.+. ..+++..+.+.++.|...
T Consensus 55 ~~lk~~A~r~~~~~G~rF---lgG~aVP~~~~~~l~~~L~~i~~eF~~~---k~~Fl~~Yd~~i~~w~~~ 118 (257)
T PF11348_consen 55 SKLKKRAERLCLKVGVRF---LGGYAVPEDKAEELAEELEDIKTEFEQE---KQDFLANYDQAIEEWIDR 118 (257)
T ss_pred HHHHHHHHHHHHHcCCcc---cceeEcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 567888999999999653 3455677888889999999888877764 444566666666777654
No 53
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.51 E-value=2e+02 Score=24.50 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 115 LEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
+++++....+.++.|+.+..+|++
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 54
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=32.13 E-value=1.5e+02 Score=26.57 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003392 78 KLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSE 135 (823)
Q Consensus 78 kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~ 135 (823)
|+||-.+.+++.++-. +++.....-|+.-+.++++..++.+++++.++++...+.
T Consensus 44 KVRYSLRVLEq~~iI~---PS~~GAi~td~~~e~ie~i~~dl~ei~e~~~~i~e~~~~ 98 (101)
T COG3388 44 KVRYSLRVLEQENIIS---PSRQGAILTDDFPEFIEEIIGDLSEINEEAENIEEDVAK 98 (101)
T ss_pred hhhhhhhhhhhcCccC---ccccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666432 122223334555556666666677776666666655544
No 55
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=31.92 E-value=8.7e+02 Score=28.25 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003392 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSE 135 (823)
Q Consensus 102 ~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~ 135 (823)
.--+.++..+++..|+++..+..+.+.|++++..
T Consensus 329 ~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 329 PGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4457788888888999999999988888887654
No 56
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.65 E-value=1.7e+02 Score=26.14 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 102 ~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
....+.|++..+.++.++..+..+.+.+.+++++++..
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666777776666666666665543
No 57
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=31.51 E-value=1.6e+02 Score=32.27 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=34.3
Q ss_pred ccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 34 ESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLK 88 (823)
Q Consensus 34 e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~k 88 (823)
+..+++.+.|.++..+|.++...+ .......+-+.++++.++++-+.+.+.+
T Consensus 55 ~~ld~~~~kl~~Ms~~ql~~~~~k---~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 55 DSLDELKEKLKEMSSTQLRANIAK---AEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HhhHHHHHHHHhcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999998875432 2234444555566777777777666654
No 58
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=31.43 E-value=4.7e+02 Score=25.58 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 64 TYAAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 64 ~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
....++-|.+|..++|.++...+..... |-...++-+...++....++..+.++..+-++++.+..+.-
T Consensus 53 kVq~~LgrveEetkrLa~ireeLE~l~d--------P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~ 121 (159)
T PF04949_consen 53 KVQAQLGRVEEETKRLAEIREELEVLAD--------PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAF 121 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhcc--------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445788899999999999998875433 33345667777777777777777777766666555544433
No 59
>PRK00736 hypothetical protein; Provisional
Probab=31.36 E-value=2.2e+02 Score=23.96 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003392 106 DDLEVKL 112 (823)
Q Consensus 106 ~ele~~l 112 (823)
++||..+
T Consensus 8 ~~LE~kl 14 (68)
T PRK00736 8 TELEIRV 14 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 60
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.60 E-value=89 Score=29.73 Aligned_cols=31 Identities=10% Similarity=0.211 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
|+..+..+.+.+++.++....++++...+.+
T Consensus 78 De~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 78 DEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333344444444444444444433333
No 61
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.46 E-value=2.5e+02 Score=34.26 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 103 ~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
..+.++.+.++++++++.++..++..++.++.++++..
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i 458 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAI 458 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666555555555555555444433
No 62
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.45 E-value=3.2e+02 Score=24.76 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 101 ~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
...-.+.+++.++.++.++..+.++.+.++++.++++..
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666777777777777777777777766554
No 63
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.37 E-value=1.6e+02 Score=31.26 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
.++.|..++....++..++.+++.++..++.+++...
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 64
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.75 E-value=1.9e+02 Score=31.12 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003392 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFS 151 (823)
Q Consensus 102 ~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l~ 151 (823)
...++..++++.+.++++.++.+++.+.+.++.+++..+..+.+.-.++.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788899999999999999999999999998888887666544
No 65
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=29.73 E-value=1.3e+02 Score=22.45 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
.++++.+.+=++|.++++-.+....+.+.++++..+.
T Consensus 5 ~ieelkqll~rle~eirett~sl~ninksidq~dk~~ 41 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKYT 41 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhchh
Confidence 4667777777778777777777777777776665543
No 66
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.56 E-value=1.8e+02 Score=23.58 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
+++|..++..+..++.++.+.+..++......++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554444433
No 67
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.46 E-value=2.1e+02 Score=24.17 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 107 DLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 107 ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
++++.+.+++.++.+..+..+.++++....+..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544444433
No 68
>smart00338 BRLZ basic region leucin zipper.
Probab=29.00 E-value=1.6e+02 Score=24.20 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
.+++|+.++..++.+..++...++.|+.+...+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666665544
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.93 E-value=8.5e+02 Score=29.06 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 72 CAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 72 ~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
...+.+.++.+++++....-+. +.-+.-++++..++++.++++..+.++.++|++++
T Consensus 268 ~~~L~~D~nK~~~y~~~~~~k~-----~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 268 KARLQDDVNKFQAYVSQMKSKK-----QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHhHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665432111 11122355556666666666666666666665543
No 70
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.68 E-value=6.4e+02 Score=25.64 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=18.9
Q ss_pred ccHHHHHHHhhccCcEEEecCCC
Q 003392 34 ESAHLTVSYLGELGLLQFKDLNS 56 (823)
Q Consensus 34 e~a~~~v~~Lg~lg~Vqf~Dln~ 56 (823)
-...++|..|=+-|+|+..-.-.
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGs 52 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGS 52 (188)
T ss_pred hhHHHHHHHHhccccchhhhccC
Confidence 46789999999999999887643
No 71
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=28.54 E-value=3e+02 Score=27.73 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 102 ~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
+.+-.++++.+.+....+..+.++.+.+.+..++..|..++
T Consensus 142 eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~ 182 (192)
T COG5374 142 EADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQ 182 (192)
T ss_pred hcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445566666655566666666666666655555555444
No 72
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=28.53 E-value=1.4e+02 Score=23.72 Aligned_cols=33 Identities=9% Similarity=0.246 Sum_probs=22.0
Q ss_pred HHHHHHhhhcCCchhhHhhhhhHHHHHHHHHHHHHHHH
Q 003392 566 ILSYFNATFFRIGVNIWCQFIPQIIFLNSLFGYLSLLI 603 (823)
Q Consensus 566 ~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~gyl~~~i 603 (823)
+++.+..+|+|+...+.+..+. ...|||...+.
T Consensus 10 ~~g~~rslK~KN~l~i~F~~~t-----~~VFGwFtimT 42 (52)
T PF10958_consen 10 AFGVLRSLKNKNFLGIGFALVT-----VAVFGWFTIMT 42 (52)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-----HHHHHHHHHHH
Confidence 3467888899988877766544 23467766554
No 73
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=28.47 E-value=4.4e+02 Score=23.74 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=8.3
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q 003392 122 INANGDKLQRAHSELVEYKL 141 (823)
Q Consensus 122 l~~~~~~L~~~~~~l~e~~~ 141 (823)
+.+++++|++...+|.+|..
T Consensus 71 Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 71 IEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 74
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=28.15 E-value=1.5e+02 Score=34.49 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 64 TYAAQIKKCAEMARKLRFFKEQMLKAGILSS-VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 64 ~~~~~i~r~eE~~~kl~~l~~~l~k~~i~~~-~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
++++++..|+|..++|..+...+.+..+... ...++.+. +++.++.+.+.++.+.+++.+.++..+++..
T Consensus 414 ~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~~~l~~dk~-------~~~~~vnn~ki~l~~~ieki~~~l~~lqe~l 484 (543)
T COG1315 414 ELTEEISLHEERLKKLTKLLVALVKVKIESKKNILPPDKE-------SLLTAVNNTKITLRNSIEKIKAELEGLQEEL 484 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcH-------HHHHhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999888888776422211 11112221 3344455566667777777777777766644
No 75
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=28.14 E-value=1.1e+02 Score=23.55 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 109 EVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 109 e~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
.+.-+.+|+.+.++.+++.+|+++++.|..
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777777666644
No 76
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.06 E-value=2e+02 Score=31.83 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003392 113 GDLEAELVEINANGDKLQRAHSELVEYKL 141 (823)
Q Consensus 113 ~~le~~l~~l~~~~~~L~~~~~~l~e~~~ 141 (823)
+++.+++.++.++.+++.+++.++++...
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433333
No 77
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=27.94 E-value=1.8e+02 Score=25.08 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
..+...++.++++++.++.++.++|+.+...+.....+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rI 63 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERI 63 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 45666677777778888888888888888777665444
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.94 E-value=2.7e+02 Score=23.38 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
++||..+.-.+..+.++++-+.+..+++.+|+.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 79
>PF15456 Uds1: Up-regulated During Septation
Probab=27.77 E-value=2.6e+02 Score=26.48 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=49.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 60 PFQRTYAAQIKKCAEMARKLR------FFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 60 ~~~r~~~~~i~r~eE~~~kl~------~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
...+.....-.||+-+.+++. -.-..+.+..-+.. ...........+-++++...+..+.++.+++.+++++.
T Consensus 26 ~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~-~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~ 104 (124)
T PF15456_consen 26 ELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSS-RRARFSRESSLKAEEELAESDRKCEELAQELWKLENRL 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444455566666666654 22222222221110 11223345677888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhh
Q 003392 134 SELVEYKLVLQKAGE 148 (823)
Q Consensus 134 ~~l~e~~~vL~~~~~ 148 (823)
.++.. .+|+.+..
T Consensus 105 ~~~~~--rLLeH~Aa 117 (124)
T PF15456_consen 105 AEVRQ--RLLEHTAA 117 (124)
T ss_pred HHHHH--HHHHHHHH
Confidence 87744 34554443
No 80
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.53 E-value=2.2e+02 Score=23.32 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~ 137 (823)
+.+|+..+..++.+...+...++.|..+...|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555554443
No 81
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.50 E-value=6.5e+02 Score=33.33 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003392 552 MSILLGVAQMNLGIILSY 569 (823)
Q Consensus 552 ~si~iGv~~~~~g~~l~~ 569 (823)
+.++++++-+++.+.|--
T Consensus 26 ~gIlLlllAlfL~lALiS 43 (1355)
T PRK10263 26 LLILIVLFAVWLMAALLS 43 (1355)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444433
No 82
>PLN02939 transferase, transferring glycosyl groups
Probab=27.35 E-value=8.4e+02 Score=31.34 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=26.4
Q ss_pred EEEEeChhhHHHHHHhhhccC-cEEeeCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 003392 247 VVFYSGERAKNKILKICDAFG-ANRYPFNE-EFDKQAQAISEVSGRLSELKTTLD 299 (823)
Q Consensus 247 vv~~~~~~~~~~v~~i~~~~~-~~~~~~p~-~~~~~~~~l~~l~~~i~~~~~~l~ 299 (823)
++.-+.++...+|+++=.++. ++.+.+.. .....++.++.+++++++...++.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (977)
T PLN02939 321 LVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIH 375 (977)
T ss_pred HHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 444466788888888855553 22333311 112333444555555544444433
No 83
>PRK09343 prefoldin subunit beta; Provisional
Probab=27.00 E-value=4.1e+02 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 100 RADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 100 ~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
+.+....++++.++-++.++..+..+.+.+++++.++...
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666666667777777777777766666554
No 84
>PRK14127 cell division protein GpsB; Provisional
Probab=26.74 E-value=2.5e+02 Score=26.06 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 100 RADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 100 ~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
-+-++-+++++-|+++.+++..+..+..+|+++..++++....
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888887775443
No 85
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.56 E-value=4.1e+02 Score=24.71 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
..+++.++.+++++.++.+++++|++.++.+++.
T Consensus 76 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~ 109 (118)
T cd04776 76 KQLEKMLEKIEKRRAELEQQRRDIDAALAELDAA 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555443
No 86
>PRK00846 hypothetical protein; Provisional
Probab=26.52 E-value=3.1e+02 Score=23.80 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 70 KKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 70 ~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
.|++++|.++-|-++ ++++|.+.+-+....+..+...+..|..+++++..
T Consensus 13 ~Ri~~LE~rlAfQe~-------------------tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 13 ARLVELETRLSFQEQ-------------------ALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 87
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=4.6e+02 Score=31.49 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=19.6
Q ss_pred hhhh-hhHHHHHHHHHHHHHHHHHHHHHHHcC
Q 003392 60 PFQR-TYAAQIKKCAEMARKLRFFKEQMLKAG 90 (823)
Q Consensus 60 ~~~r-~~~~~i~r~eE~~~kl~~l~~~l~k~~ 90 (823)
.++| ..+..++.+.+...||+.++..++..+
T Consensus 341 dH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g 372 (652)
T COG2433 341 DHERDALAAAYKAYLAYKPKLEKVERKLPELG 372 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444 455566667777777777777666543
No 88
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.12 E-value=2.1e+02 Score=26.46 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 107 DLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 107 ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
+|-+.+.++++++.++.+++.+|++++.++.|.-..|+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666555444
No 89
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.94 E-value=2.2e+02 Score=25.01 Aligned_cols=34 Identities=12% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
++++.+++++...++.+++.++..|++++.+++.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777777654
No 90
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.93 E-value=1.6e+02 Score=27.51 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
+++.+..+.+.+++..+.+++..++..+.++...+..|+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888877766654
No 91
>PRK10869 recombination and repair protein; Provisional
Probab=25.82 E-value=4.2e+02 Score=31.74 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 003392 70 KKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINAN 125 (823)
Q Consensus 70 ~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~ 125 (823)
.|+++++.++..+.+...|++. +++++-+..+++++++.++.+.
T Consensus 296 ~~l~~ie~Rl~~l~~L~rKyg~------------~~~~~~~~~~~l~~eL~~L~~~ 339 (553)
T PRK10869 296 NRLAELEQRLSKQISLARKHHV------------SPEELPQHHQQLLEEQQQLDDQ 339 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHHHHHhhCC
Confidence 4466666666666666666663 3455555555555555554443
No 92
>KOG2829 consensus E2F-like protein [Transcription]
Probab=25.80 E-value=6.7e+02 Score=27.28 Aligned_cols=111 Identities=11% Similarity=0.022 Sum_probs=54.5
Q ss_pred CCCCccccccCceE------EEEeccccHHHHHHHhhccCcEEEecCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003392 14 PPMDLFRSEPMQLV------QIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQML 87 (823)
Q Consensus 14 ~~~s~fRSe~M~~~------~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~r~~~~~i~r~eE~~~kl~~l~~~l~ 87 (823)
+.+.++|.=-|+-+ -...=+|.|+++|.+--.-+.--+++.|.. ..+. .+--||.-+.++-+.-+ +.+.
T Consensus 41 k~g~gLRhfs~kVCeKve~Kg~TtYneVADelVaef~~~n~~~~i~~n~~--~yd~--KNIRRRVYDALNVlmAm-nIIs 115 (326)
T KOG2829|consen 41 KAGGGLRHFSMKVCEKVERKGTTTYNEVADELVAEFAGANNYSHICPNEQ--EYDQ--KNIRRRVYDALNVLMAM-NIIS 115 (326)
T ss_pred CCCcchhhhhHHHHHHHHhcCCccHHHHHHHHHHHHhccccccccCcccc--ccch--HHHHHHHHHHHHHHHHH-HHHh
Confidence 33456776555433 345557889999998877776655555542 1111 12223444444444333 4444
Q ss_pred HcCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003392 88 KAGILSS-VKSTTRADNNTDDLEVKLGDLEAELVEINANGDKL 129 (823)
Q Consensus 88 k~~i~~~-~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L 129 (823)
|.+..++ ...+.....++.+++++-.+..+++.+-.+..++|
T Consensus 116 KdKKEIrW~GLP~~ss~dv~~le~Er~k~~erI~kK~a~lqEl 158 (326)
T KOG2829|consen 116 KDKKEIRWIGLPATSSQDVSELEEERKKRMERIKKKAAQLQEL 158 (326)
T ss_pred cccceeeeeccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443222 12333344555666655554444444433333333
No 93
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.78 E-value=5.2e+02 Score=26.22 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003392 69 IKKCAEMARKLRFFKEQM 86 (823)
Q Consensus 69 i~r~eE~~~kl~~l~~~l 86 (823)
.+++.++..+|.-+...+
T Consensus 87 ~r~~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 87 YRSKGELAQQLVELNDEL 104 (194)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 334444444444443333
No 94
>PRK02119 hypothetical protein; Provisional
Probab=25.59 E-value=3.7e+02 Score=22.95 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 70 KKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 70 ~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
.|++++|.++-|.++-+ ++|.+.+-+..+++..+......|..++.++..
T Consensus 9 ~Ri~~LE~rla~QE~ti-------------------e~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 9 NRIAELEMKIAFQENLL-------------------EELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 95
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.02 E-value=6.6e+02 Score=24.56 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003392 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKA 146 (823)
Q Consensus 103 ~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~ 146 (823)
.+++++.++++.+.+++..+..++..|+..+.++.+.+.-|+..
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~l 49 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENL 49 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888887766655533
No 96
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=24.81 E-value=4.3e+02 Score=29.11 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=11.7
Q ss_pred CCCCCCCccccccCc
Q 003392 11 GCCPPMDLFRSEPMQ 25 (823)
Q Consensus 11 ~~~~~~s~fRSe~M~ 25 (823)
||||-. ||+..+|.
T Consensus 40 g~CPHD-lF~nTk~d 53 (319)
T KOG0796|consen 40 GFCPHD-LFQNTKMD 53 (319)
T ss_pred CCCcHH-Hhhhhhcc
Confidence 788876 89998887
No 97
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.70 E-value=83 Score=34.91 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhh
Q 003392 561 MNLGIILSYFNAT 573 (823)
Q Consensus 561 ~~~g~~l~~~n~~ 573 (823)
+++|.++..+|++
T Consensus 269 Lf~~~~~q~yn~~ 281 (330)
T PF07851_consen 269 LFFGQFFQLYNAY 281 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666654
No 98
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.66 E-value=2.3e+02 Score=24.17 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
+++||..++..-+.+..+..++++|+.+.+.+.+....|.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566666666666666666666666666555555444444
No 99
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.32 E-value=5.6e+02 Score=30.64 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Q 003392 70 KKCAEMARKLRFFKEQMLKAGIL 92 (823)
Q Consensus 70 ~r~eE~~~kl~~l~~~l~k~~i~ 92 (823)
.|+++++.++.-+.....|++.+
T Consensus 297 ~~L~~ve~Rl~~L~~l~RKY~~~ 319 (557)
T COG0497 297 NRLEEVEERLFALKSLARKYGVT 319 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 35666667777776666666654
No 100
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.09 E-value=2.5e+02 Score=25.43 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 66 AAQIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 66 ~~~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
.+...+.+++..+-+-+...+.+..-. ..+.+++-++..++.+++.++.+....++++++++
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~---------~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKA---------GEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHT---------TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhC---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554432211 13446666666555555555555555555555433
No 101
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.87 E-value=2.3e+02 Score=24.91 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKA 146 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~ 146 (823)
.++++..++.....++..++.++.+|+..+.-++++
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999988876654
No 102
>PRK00736 hypothetical protein; Provisional
Probab=23.73 E-value=3.4e+02 Score=22.81 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 003392 71 KCAEMARKLRFFKE 84 (823)
Q Consensus 71 r~eE~~~kl~~l~~ 84 (823)
|++++|.++-|.++
T Consensus 6 Ri~~LE~klafqe~ 19 (68)
T PRK00736 6 RLTELEIRVAEQEK 19 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666655544
No 103
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.55 E-value=1.2e+02 Score=35.69 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=20.2
Q ss_pred CCCcccccccchhhHHHHHH----hccCCCCC
Q 003392 386 SPPTYFRTNKFTSAFQEIVD----AYGVAKYR 413 (823)
Q Consensus 386 ~pPt~l~n~~~~~pFe~iv~----~Yg~P~Y~ 413 (823)
-+|+.|. +...-|||++++ .|-+|+-+
T Consensus 447 avPviLg-~~~~LPyqd~idWrraal~lPkaR 477 (907)
T KOG2264|consen 447 AVPVILG-NSQLLPYQDLIDWRRAALRLPKAR 477 (907)
T ss_pred CeeEEec-cccccchHHHHHHHHHhhhCCccc
Confidence 4899998 566669999987 56677654
No 104
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.49 E-value=1.5e+02 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 107 DLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 107 ele~~l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
.+|+.+..+|+++.+..++.++.+++....
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477788888888888887777777766543
No 105
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=23.47 E-value=3e+02 Score=25.36 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhH
Q 003392 101 ADNNTDDLEVKLGDLEAELVEINANG 126 (823)
Q Consensus 101 ~~~~l~ele~~l~~le~~l~~l~~~~ 126 (823)
....++++.+.++.+++++.++.++.
T Consensus 81 r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 81 RQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777777777766666554
No 106
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=23.37 E-value=2e+02 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~ 137 (823)
+++++.+++++.++++.+...+...|+++...++
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888877775
No 107
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=23.31 E-value=3.3e+02 Score=27.09 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHH
Q 003392 68 QIKKCAEMARKLRFFKEQMLKAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGD 127 (823)
Q Consensus 68 ~i~r~eE~~~kl~~l~~~l~k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~ 127 (823)
.+.-++|+.++++.|+++.+...-+ -....++++.+++.++++.++.+.+.
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d~---------Iv~~~~i~e~IKd~de~L~~I~d~iK 159 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKDN---------IVTEKLIEELIKDFDERLKEIRDKIK 159 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh---------ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666555532211 11124555566666666655555543
No 108
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.20 E-value=79 Score=29.91 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.0
Q ss_pred HHHHHHHHhhchh
Q 003392 425 FPFLFAVMFGDWG 437 (823)
Q Consensus 425 Fp~fFG~MfGD~G 437 (823)
..+.||+|.|=+|
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 5677888888776
No 109
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.17 E-value=1.9e+02 Score=27.64 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=23.2
Q ss_pred HHHHHhccccccccCcEE-EEEEEeecCCHHHHHHHHHh
Q 003392 328 SIYHTLNMLSLDVTKKCL-VGEGWSPVFATKQIQDALER 365 (823)
Q Consensus 328 ~i~~~l~~~~~~~t~~~~-~~~GWvP~~~~~~l~~~l~~ 365 (823)
.+.++++ ..+.+++|| .+-|-.-+..++.+.-.|+.
T Consensus 50 lVi~tlk--~~dp~RKCfRmIgGvLVErTVkeVlP~L~~ 86 (140)
T KOG4098|consen 50 LVIETLK--DLDPTRKCFRMIGGVLVERTVKEVLPILQT 86 (140)
T ss_pred HHHHHHH--hcChhhHHHHHhccchhhhhHHHHhHHHHh
Confidence 3444455 567778888 56676777777776666554
No 110
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.15 E-value=2.8e+02 Score=31.82 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
+++.+++++.+...++.++.+++++++.+++.++..
T Consensus 74 ~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 74 EIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555443
No 111
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=4.6e+02 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~ 141 (823)
..-.+++++....++.+.++.+++.+++.+.
T Consensus 87 ~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334555666666666666666665555443
No 112
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.13 E-value=1.5e+02 Score=30.14 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 110 VKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 110 ~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
++.++..+++.++.+++++.+++.+.++++..-
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666555443
No 113
>PRK14127 cell division protein GpsB; Provisional
Probab=22.95 E-value=2.1e+02 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
-++++.++.+.+..++.++.++..+|++++.++....
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566667777777778888888888888777776643
No 114
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=22.33 E-value=4.4e+02 Score=21.55 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKA 146 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~ 146 (823)
.+.+++..+..+++.+....+..+...+.+..|+.+..-+++.
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~ 44 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKY 44 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888888888887776655543
No 115
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.17 E-value=1.3e+02 Score=33.32 Aligned_cols=57 Identities=21% Similarity=0.205 Sum_probs=34.4
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHhhhccccccc-hhhhchhhHHHHHHHHHHHHHHHHHhc
Q 003392 431 VMFGDWGHGICLLLGTLVLIVREKKLASQKLDD-ITDMTFGGRYVILMMALFSIYTGLIYN 490 (823)
Q Consensus 431 ~MfGD~GyGlll~l~~~~l~~~~~~~~~~~~~~-~~~~~~~gr~il~~~gi~si~~G~lyg 490 (823)
+-+||+.+-++++++-.++++..++..+.+... .... ...+..+.-++.+.||+-|.
T Consensus 23 FSvgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~l~~~---~~~~~~~y~~F~~~WGlNY~ 80 (318)
T PF12725_consen 23 FSVGDILYYLLILFLLYYLIRLIRKIFKKKKRFKLLNI---LFFLSVLYFLFYLLWGLNYY 80 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHhhhhcC
Confidence 458999999888877777666544433322211 1221 12345566677888888885
No 116
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.11 E-value=3e+02 Score=28.94 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 003392 70 KKCAEMARKLRFFK 83 (823)
Q Consensus 70 ~r~eE~~~kl~~l~ 83 (823)
.||+.++.+++-..
T Consensus 92 eri~~lE~~l~ea~ 105 (237)
T PF00261_consen 92 ERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 117
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.07 E-value=2.8e+02 Score=25.82 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
.++-+.+.++++++.++.+++.+|++...++.|.-..|+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777777777777766666555543
No 118
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=21.97 E-value=4.8e+02 Score=25.25 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 278 DKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGD 314 (823)
Q Consensus 278 ~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~ 314 (823)
..-.+.+++++++.++.++++++..++.+++++.+..
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777666666555554443
No 119
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.90 E-value=7.9e+02 Score=32.61 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhccc
Q 003392 475 ILMMALFSIYTGLIYNEF 492 (823)
Q Consensus 475 l~~~gi~si~~G~lyg~f 492 (823)
.+++.+.+++..+..-+|
T Consensus 27 gIlLlllAlfL~lALiSY 44 (1355)
T PRK10263 27 LILIVLFAVWLMAALLSF 44 (1355)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344444444444443333
No 120
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=21.78 E-value=2e+02 Score=26.95 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGE 148 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~ 148 (823)
.-++..++.++++++.+...+.++++.+.++|...-.+++.++.
T Consensus 62 ~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAkk 105 (120)
T COG4839 62 AYQVQGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAKK 105 (120)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 35666688889999999999999999999999888777776644
No 121
>PHA03048 IMV membrane protein; Provisional
Probab=21.70 E-value=4.3e+02 Score=23.53 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhHhhhhhHHHHHHHHH
Q 003392 552 MSILLGVAQMNLGIILSYFNATFFRIGVNIWCQFIPQIIFLNSLF 596 (823)
Q Consensus 552 ~si~iGv~~~~~g~~l~~~n~~~~~~~~~~~~~~~~~~l~~~~~~ 596 (823)
-.++.|++.+..+-++.++..-+.+.. +-....++.+-|..|++
T Consensus 13 ~vli~GIiLL~~aCIfAfidfsK~k~~-~~~wRalsii~FIlgiv 56 (93)
T PHA03048 13 TALIGGIILLAASCIFAFVDFSKNKAT-VTVWRALSGIAFVLGIV 56 (93)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcCCCc-chhHHHHHHHHHHHHHH
Confidence 478899999999999999988777553 33333445555555543
No 122
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.63 E-value=1.1e+03 Score=29.40 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.4
Q ss_pred eecCCHHHHHHHHHhhh
Q 003392 351 SPVFATKQIQDALERAA 367 (823)
Q Consensus 351 vP~~~~~~l~~~l~~~~ 367 (823)
+|+++.+.+++.|.+.+
T Consensus 682 L~~~Q~~~I~~iL~~~~ 698 (717)
T PF10168_consen 682 LSESQKRTIKEILKQQG 698 (717)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 69999999999998754
No 123
>PRK00295 hypothetical protein; Provisional
Probab=21.59 E-value=4e+02 Score=22.40 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
+++||..+.-.+.-+.++++-+.+..+++.++...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444455555444444444444433
No 124
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.47 E-value=4.6e+02 Score=23.24 Aligned_cols=44 Identities=7% Similarity=0.095 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-CchhhHhhhhhHHHHHHHH
Q 003392 552 MSILLGVAQMNLGIILSYFNATFFR-IGVNIWCQFIPQIIFLNSL 595 (823)
Q Consensus 552 ~si~iGv~~~~~g~~l~~~n~~~~~-~~~~~~~~~~~~~l~~~~~ 595 (823)
-.++.|++.+..+-++.++..-|.+ +..+-....++-+-|..|+
T Consensus 13 ~vli~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~ 57 (91)
T PHA02680 13 GVLICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGA 57 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHHH
Confidence 3688999999999999999987766 3334333344444454443
No 125
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.45 E-value=2.8e+02 Score=25.74 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003392 114 DLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFS 151 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l~ 151 (823)
+...++..+...++.|++.+..+++...-+.....||.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~ 115 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLE 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555554
No 126
>PRK04325 hypothetical protein; Provisional
Probab=21.29 E-value=3.9e+02 Score=22.86 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~ 137 (823)
++||..+.-.+.-+.++++-+.+-++++.+|.
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333333344443333333344333
No 127
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=21.22 E-value=4.6e+02 Score=22.03 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
+..+++.++++-....++..+...|+.+...+...+.-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~ 39 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQ 39 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666665555444
No 128
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.06 E-value=3.4e+02 Score=25.07 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~ 141 (823)
++++++++.++.+++.++.+.+..|..+-.+|.-.-+
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655555555555555555555555544333
No 129
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.68 E-value=5.3e+02 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
+.++++.++.++.++++.|+++..++...
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555554443
No 130
>PRK01203 prefoldin subunit alpha; Provisional
Probab=20.56 E-value=2.9e+02 Score=26.51 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
.+++++++-+++++..+.++++.|+....++.+-...|+
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~ 41 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLS 41 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888877555444
No 131
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.53 E-value=5.4e+02 Score=29.86 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~ 141 (823)
.+..+.++++.+...++.++++++++++.++++...
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777777777777776666543
No 132
>PRK04406 hypothetical protein; Provisional
Probab=20.48 E-value=4.7e+02 Score=22.47 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 003392 107 DLEVKLGDLEAELVEINANGD 127 (823)
Q Consensus 107 ele~~l~~le~~l~~l~~~~~ 127 (823)
.+++.+.++|.++.-+.+.++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe 28 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIE 28 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333
Done!