Query 003392
Match_columns 823
No_of_seqs 208 out of 959
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 23:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 100.0 9.7E-46 3.3E-50 411.0 31.4 341 17-416 7-357 (357)
2 2nvj_A 25MER peptide from vacu 99.0 1.2E-11 4E-16 79.1 -2.7 26 717-742 1-26 (26)
3 2jtw_A Transmembrane helix 7 o 98.7 4.3E-09 1.5E-13 66.8 2.5 21 723-743 2-22 (26)
4 1u7l_A Vacuolar ATP synthase s 85.8 44 0.0015 36.4 25.6 154 191-367 188-348 (392)
5 2l5g_B Putative uncharacterize 70.6 11 0.00036 27.4 5.6 34 106-139 5-38 (42)
6 2akf_A Coronin-1A; coiled coil 66.2 7.4 0.00025 25.7 3.6 27 114-140 3-29 (32)
7 3rrk_A V-type ATPase 116 kDa s 64.8 16 0.00056 39.2 8.7 86 104-222 227-313 (357)
8 1kd8_A GABH AIV, GCN4 acid bas 58.4 21 0.00073 24.8 5.0 30 105-134 3-32 (36)
9 2oqq_A Transcription factor HY 57.7 35 0.0012 24.7 6.2 31 105-135 5-35 (42)
10 3nmd_A CGMP dependent protein 56.5 26 0.00087 28.7 6.1 40 104-143 20-59 (72)
11 2oqq_A Transcription factor HY 55.8 39 0.0013 24.4 6.2 35 111-145 4-38 (42)
12 1kd8_B GABH BLL, GCN4 acid bas 51.6 41 0.0014 23.4 5.5 27 105-131 3-29 (36)
13 3twe_A Alpha4H; unknown functi 49.8 27 0.00092 22.0 4.0 21 113-133 4-24 (27)
14 2wq1_A General control protein 49.1 30 0.001 23.6 4.5 24 115-138 5-28 (33)
15 3t98_B Nucleoporin NUP58/NUP45 47.4 1.3E+02 0.0045 25.8 9.6 42 101-142 42-83 (93)
16 2lqh_B Forkhead box O3, FOXO3A 51.3 4.4 0.00015 29.2 0.0 14 12-25 38-51 (52)
17 3c3f_A Alpha/beta peptide with 42.2 39 0.0013 23.2 4.2 24 115-138 6-29 (34)
18 3m48_A General control protein 42.2 32 0.0011 23.5 3.8 25 114-138 4-28 (33)
19 3oja_B Anopheles plasmodium-re 40.0 73 0.0025 36.4 9.3 24 110-133 544-567 (597)
20 2r2v_A GCN4 leucine zipper; co 39.2 62 0.0021 22.3 4.8 24 115-138 6-29 (34)
21 2wuj_A Septum site-determining 39.0 27 0.00093 27.1 3.6 38 101-138 18-55 (57)
22 1uo4_A General control protein 38.2 43 0.0015 23.0 3.9 25 114-138 5-29 (34)
23 3c3g_A Alpha/beta peptide with 38.1 63 0.0021 22.1 4.7 25 114-138 4-28 (33)
24 2yy0_A C-MYC-binding protein; 37.5 27 0.00093 26.8 3.3 36 99-134 15-50 (53)
25 2akf_A Coronin-1A; coiled coil 37.2 49 0.0017 21.9 3.9 28 106-133 2-29 (32)
26 3c3g_A Alpha/beta peptide with 35.9 57 0.002 22.3 4.2 29 105-133 2-30 (33)
27 2lw1_A ABC transporter ATP-bin 35.6 1.6E+02 0.0054 24.8 8.3 29 112-140 58-86 (89)
28 2wq1_A General control protein 35.2 74 0.0025 21.7 4.7 28 105-132 2-29 (33)
29 2oxj_A Hybrid alpha/beta pepti 34.7 75 0.0026 21.8 4.7 27 113-139 4-30 (34)
30 2xv5_A Lamin-A/C; structural p 33.5 2E+02 0.0068 23.6 8.8 51 282-333 5-55 (74)
31 1t2k_D Cyclic-AMP-dependent tr 33.1 94 0.0032 24.2 6.0 33 105-137 24-56 (61)
32 1uo4_A General control protein 33.0 77 0.0026 21.8 4.5 28 105-132 3-30 (34)
33 3m48_A General control protein 31.9 57 0.002 22.3 3.7 28 105-132 2-29 (33)
34 3c3f_A Alpha/beta peptide with 31.7 91 0.0031 21.4 4.7 29 105-133 3-31 (34)
35 2ns1_B Nitrogen regulatory pro 31.4 27 0.00094 31.1 2.9 28 21-48 2-29 (116)
36 1gk6_A Vimentin; intermediate 31.4 1.5E+02 0.005 23.1 6.8 47 286-333 4-50 (59)
37 2zdi_C Prefoldin subunit alpha 31.2 3.1E+02 0.011 25.2 11.2 41 104-144 10-50 (151)
38 2zqm_A Prefoldin beta subunit 31.2 1.3E+02 0.0044 26.3 7.5 39 102-140 69-107 (117)
39 2oxj_A Hybrid alpha/beta pepti 31.0 86 0.0029 21.6 4.5 28 105-132 3-30 (34)
40 2l5g_B Putative uncharacterize 30.7 98 0.0033 22.5 5.0 27 105-131 11-37 (42)
41 3okq_A BUD site selection prot 30.5 3.3E+02 0.011 25.1 11.9 74 70-152 21-104 (141)
42 1kd8_B GABH BLL, GCN4 acid bas 30.2 86 0.0029 21.8 4.4 28 112-139 3-30 (36)
43 2wt7_A Proto-oncogene protein 29.5 1.3E+02 0.0045 23.6 6.4 34 105-138 25-58 (63)
44 2cz4_A Hypothetical protein TT 29.4 29 0.00098 31.3 2.7 38 11-48 12-49 (119)
45 2bni_A General control protein 29.4 74 0.0025 21.9 3.9 25 114-138 5-29 (34)
46 2r2v_A GCN4 leucine zipper; co 29.3 1.1E+02 0.0039 21.0 4.8 29 105-133 3-31 (34)
47 3efg_A Protein SLYX homolog; x 28.8 1.2E+02 0.0043 25.0 6.3 14 71-84 15-28 (78)
48 2bni_A General control protein 28.0 1E+02 0.0036 21.2 4.5 28 105-132 3-30 (34)
49 1fxk_A Prefoldin; archaeal pro 28.0 63 0.0022 27.9 4.7 37 103-139 65-101 (107)
50 1kd8_A GABH AIV, GCN4 acid bas 27.4 1.3E+02 0.0043 21.0 4.8 28 112-139 3-30 (36)
51 3iv1_A Tumor susceptibility ge 26.5 2.8E+02 0.0094 23.0 8.6 32 106-137 42-73 (78)
52 1ci6_A Transcription factor AT 26.1 1.5E+02 0.005 23.4 6.0 31 106-136 26-56 (63)
53 3nmd_A CGMP dependent protein 25.5 97 0.0033 25.3 4.8 24 111-134 41-64 (72)
54 3hnw_A Uncharacterized protein 24.7 1.7E+02 0.0059 26.9 7.1 6 27-32 19-24 (138)
55 1t3j_A Mitofusin 1; coiled coi 24.6 2.1E+02 0.0072 24.7 7.0 26 114-139 51-76 (96)
56 2hy6_A General control protein 24.6 98 0.0034 21.3 3.8 25 114-138 5-29 (34)
57 2hy6_A General control protein 23.9 1.5E+02 0.0052 20.4 4.7 29 105-133 3-31 (34)
58 2wuj_A Septum site-determining 23.5 60 0.002 25.2 3.2 27 105-131 29-55 (57)
59 2yko_A LINE-1 ORF1P; RNA-bindi 23.0 1.6E+02 0.0053 29.6 6.9 38 104-141 7-44 (233)
60 1fxk_C Protein (prefoldin); ar 22.9 4E+02 0.014 23.7 17.1 42 104-145 2-43 (133)
61 1gd2_E Transcription factor PA 22.9 1.1E+02 0.0038 24.8 4.7 31 106-136 32-62 (70)
62 3a7p_A Autophagy protein 16; c 22.5 4.1E+02 0.014 24.8 9.1 41 105-145 84-124 (152)
63 3s4r_A Vimentin; alpha-helix, 22.4 53 0.0018 28.2 2.9 32 107-138 53-84 (93)
64 2o66_A PII protein; regulation 22.2 60 0.0021 29.8 3.5 32 17-48 6-37 (135)
65 1x8y_A Lamin A/C; structural p 21.7 3.5E+02 0.012 22.5 8.8 51 282-333 28-78 (86)
66 3efg_A Protein SLYX homolog; x 21.6 2.6E+02 0.0088 23.1 6.9 26 106-131 10-35 (78)
67 2z5i_A TM, general control pro 21.3 1.4E+02 0.0047 22.7 4.7 16 107-122 16-31 (52)
68 2wt7_A Proto-oncogene protein 21.3 2.2E+02 0.0075 22.3 6.2 34 111-144 24-57 (63)
69 1ci6_A Transcription factor AT 21.0 2.3E+02 0.0078 22.3 6.2 34 111-144 24-57 (63)
70 2jee_A YIIU; FTSZ, septum, coi 20.9 3.7E+02 0.013 22.4 8.3 31 112-142 8-38 (81)
71 3bzq_A Nitrogen regulatory pro 20.3 60 0.0021 28.6 3.0 26 23-48 2-27 (114)
72 1m1j_C Fibrinogen gamma chain; 20.2 4E+02 0.014 29.1 10.1 26 62-87 33-58 (409)
73 2l5g_A GPS2 protein, G protein 20.1 1.9E+02 0.0066 20.3 4.7 25 112-136 10-34 (38)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=100.00 E-value=9.7e-46 Score=410.99 Aligned_cols=341 Identities=14% Similarity=0.141 Sum_probs=247.2
Q ss_pred CccccccCceEEEEeccccHHHHHHHhhccCcEEEecCCCCCChhh--hhhH-HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003392 17 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQ--RTYA-AQIKKCAEMARKLRFFKEQMLKAGILS 93 (823)
Q Consensus 17 s~fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~Vqf~Dln~~~~~~~--r~~~-~~i~r~eE~~~kl~~l~~~l~k~~i~~ 93 (823)
.|+||++|+|++|++|++.+++++++||++|+|||+|++++.+.++ +++. +++++|+++.++++++.+++.+...+.
T Consensus 7 ~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~~~~ 86 (357)
T 3rrk_A 7 TIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPS 86 (357)
T ss_dssp -------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhccccccc
Confidence 5899999999999999999999999999999999999998777776 5554 578999999999999999998654221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHhhhhhhhccCCC
Q 003392 94 SVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFF-SSALTSAAAQQREMESQQTGEM 172 (823)
Q Consensus 94 ~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~~~l-~~~~~~~~~~~~~~~~i~~~~~ 172 (823)
.++...+++++++.++++++++.++.+++++|+++++++++.+.+++....|- + +
T Consensus 87 ----~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~~-------------------l- 142 (357)
T 3rrk_A 87 ----SKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAHG-------------------L- 142 (357)
T ss_dssp ----SSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-------------------T-
T ss_pred ----ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc-------------------C-
Confidence 01223458999999999999999999999999999999999977777666552 1 1
Q ss_pred CcCCCCccccccCCCCCCcceEEEEEEEE-cCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEEEEEEe
Q 003392 173 TIETPLLTDKEMSADPSKQIKLGFIAGLV-PREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVFVVFYS 251 (823)
Q Consensus 173 ~~~~~ll~~~e~~~~~~~~~~~~~~~G~I-~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~vv~~~ 251 (823)
+ . ..++.+++|+| ++++.++|++.+++.+++..+... ++...+.++++++
T Consensus 143 --d---~-----------~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~vv~~- 193 (357)
T 3rrk_A 143 --D---E-----------SPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA------------EPLENQLAALVVV- 193 (357)
T ss_dssp --T---T-----------CTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEE------------EECSSSEEEEEEE-
T ss_pred --C---c-----------cceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEe------------ecCCCcEEEEEEE-
Confidence 1 1 34689999999 799999999999999888422211 1112244444444
Q ss_pred ChhhHHHHHHhhhccCcEEeeCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 252 GERAKNKILKICDAFGANRYPFNEEFD--KQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSI 329 (823)
Q Consensus 252 ~~~~~~~v~~i~~~~~~~~~~~p~~~~--~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i 329 (823)
+++..++++++|+++||+++++|+..+ +|.+.++++++++++++++++++++++++..+.+...+..|...+.+++++
T Consensus 194 ~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 273 (357)
T 3rrk_A 194 KRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVAR 273 (357)
T ss_dssp EGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999998777 999999999999999999999999999999999899999999999999999
Q ss_pred HHHhccccccccCcEEEEEEEeecCCHHHHHHHHHhhhhcCCCceEEEEEecCCC---CCCCcccccccchhhHHHHHHh
Q 003392 330 YHTLNMLSLDVTKKCLVGEGWSPVFATKQIQDALERAAFDSNSQVGAIFQVLHTK---ESPPTYFRTNKFTSAFQEIVDA 406 (823)
Q Consensus 330 ~~~l~~~~~~~t~~~~~~~GWvP~~~~~~l~~~l~~~~~~~~~~v~~~~~~~~~~---~~pPt~l~n~~~~~pFe~iv~~ 406 (823)
|++++ .++.|+++++++||||++++++++++|++ ++ ..+.+.+.+++++ +.|||+++||+|++|||.||+|
T Consensus 274 ~~~~~--~~~~~~~~~~~~gWvp~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~ 347 (357)
T 3rrk_A 274 YKAVA--DMAAGKYGAALMGWVPQKAKGKVEEALGR-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGF 347 (357)
T ss_dssp HHHHH--HHHTTCCSEEEEEEECTTTHHHHHHTCCS-SC---EEEEC---------------------------------
T ss_pred HHHHH--hhcccCcEEEEEEEeeHHHHHHHHHHHHh-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHh
Confidence 99999 56788999999999999999999999997 42 3556667777666 6899999999999999999999
Q ss_pred ccCCCCCccC
Q 003392 407 YGVAKYREAN 416 (823)
Q Consensus 407 Yg~P~Y~EiD 416 (823)
||+|+|+|+|
T Consensus 348 Yg~p~Y~EiD 357 (357)
T 3rrk_A 348 LNTPAYGSHD 357 (357)
T ss_dssp ----------
T ss_pred cCCCCCCCCC
Confidence 9999999998
No 2
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=98.99 E-value=1.2e-11 Score=79.07 Aligned_cols=26 Identities=73% Similarity=1.120 Sum_probs=23.5
Q ss_pred HHHhhhchhhHHHHHHHHHhhhhHHH
Q 003392 717 EFVLGAVSNTASYLRLWALSLAHSEL 742 (823)
Q Consensus 717 e~vl~~lsntlSYlRL~Al~LAh~~L 742 (823)
|++++++|||+||+|+|||||||++|
T Consensus 1 e~~l~~is~tasylRlwaLsLah~~l 26 (26)
T 2nvj_A 1 EFCLNCVSHTASYLRLWALSLAHAQX 26 (26)
T ss_dssp CCSSSTTTTTCHHHHGGGSCSSCCC-
T ss_pred CeEEEEeCCchHHHHHHhhhcccccC
Confidence 46899999999999999999999875
No 3
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=98.73 E-value=4.3e-09 Score=66.79 Aligned_cols=21 Identities=81% Similarity=1.165 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhhhhHHHH
Q 003392 723 VSNTASYLRLWALSLAHSELS 743 (823)
Q Consensus 723 lsntlSYlRL~Al~LAh~~La 743 (823)
+|||+||+|||||||||++|+
T Consensus 2 ~s~tasylRlwaLsLaH~~ls 22 (26)
T 2jtw_A 2 KSHTASYLRLWALSLAHAQLS 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHhhhhHHHHh
Confidence 689999999999999999987
No 4
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=85.81 E-value=44 Score=36.42 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=79.5
Q ss_pred cceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCC----cccceEEE-EEEEeChhhHHHHHHhhhc
Q 003392 191 QIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSG----EKMEKNVF-VVFYSGERAKNKILKICDA 265 (823)
Q Consensus 191 ~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~----~~~~k~v~-vv~~~~~~~~~~v~~i~~~ 265 (823)
+.++..++=.||+.....|.+. |+..-..+ .|.+. ++.+...| |++| +...++...-|++
T Consensus 188 SEyL~TllVvVPk~~~~dwl~~-YEtL~~~V------------VPrSs~~i~~D~ey~L~~VtlF--kk~~~eF~~~~Re 252 (392)
T 1u7l_A 188 SEHLTTVLVAVPKSLKSDFEKS-YETLSKNV------------VPASASVIAEDAEYVLFNVHLF--KKNVQEFTTAARE 252 (392)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHH-GGGSSTTB------------CTTCCEEEEECSSEEEEEEEEE--GGGHHHHHHHHHH
T ss_pred cccceEEEEEEeCccHHHHHHH-HhhcCCCc------------cCChhhhhhcCCCceEEEEEEE--hhhHHHHHHHHHH
Confidence 4577888889999999999875 33222221 11111 11123344 3444 4567788888998
Q ss_pred cCcEEeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHhccccccccCc
Q 003392 266 FGANRYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQT-IGDQFEQWNLLVKKEKS-IYHTLNMLSLDVTKK 343 (823)
Q Consensus 266 ~~~~~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~-~~~~l~~~~~~~~~ek~-i~~~l~~~~~~~t~~ 343 (823)
-+|..=++--+. +.+++.++++++++.+.++....+...++. +.+....|.- +.-.+. +..+| +++---+
T Consensus 253 ~kf~vRdF~y~e----e~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiH-iKalRvFVESVL---RYGLP~~ 324 (392)
T 1u7l_A 253 KKFIPREFNYSE----ELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFH-IKALRVYVESVL---RYGLPPH 324 (392)
T ss_dssp TTCEEECCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHCSSCC
T ss_pred cCCccccCcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhhhhhh---hcCCCCc
Confidence 888765553222 223344455555555444333333333332 2333344432 211111 22233 3442223
Q ss_pred EEEEEEEeecCCHHHHHHHHHhhh
Q 003392 344 CLVGEGWSPVFATKQIQDALERAA 367 (823)
Q Consensus 344 ~~~~~GWvP~~~~~~l~~~l~~~~ 367 (823)
+..+-=..+.+..+++++.|.+.-
T Consensus 325 F~a~li~p~~k~~kKlr~~L~~~f 348 (392)
T 1u7l_A 325 FNIKIIAVPPKNLSKCKSELIDAF 348 (392)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCccHHHHHHHHHHHh
Confidence 332223357889999999998864
No 5
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=70.60 E-value=11 Score=27.40 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
++|-+.++++..++....+++.+|++++.+|++-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888889999999999999999999888774
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=66.23 E-value=7.4 Score=25.73 Aligned_cols=27 Identities=33% Similarity=0.314 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 114 DLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
++|++++.++.-.++|+++.+.|++.-
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888887653
No 7
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=64.81 E-value=16 Score=39.17 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhhhhccCCCCcCCCCcccc
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRA-HSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDK 182 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~-~~~l~e~~~vL~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ll~~~ 182 (823)
.+.+++++++++++++.++.+++.++.++ ...+..|...+.......+.- ....
T Consensus 227 ~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~-----------~~~~-------------- 281 (357)
T 3rrk_A 227 AAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAV-----------ADMA-------------- 281 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------Hhhc--------------
Confidence 45666666666666666666666666665 555555555544433322210 0000
Q ss_pred ccCCCCCCcceEEEEEEEEcCCCHHHHHHHHHHhhcCcEE
Q 003392 183 EMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVF 222 (823)
Q Consensus 183 e~~~~~~~~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~ 222 (823)
.+.++-+.-|-+|.++.+++++.+.+ +.+.++
T Consensus 282 -------~~~~~~~~~gWvp~~~~~~~~~~l~~-~~~~~~ 313 (357)
T 3rrk_A 282 -------AGKYGAALMGWVPQKAKGKVEEALGR-LRDQIV 313 (357)
T ss_dssp -------TTCCSEEEEEEECTTTHHHHHHTCCS-SCEEEE
T ss_pred -------ccCcEEEEEEEeeHHHHHHHHHHHHh-cCCceE
Confidence 02345678899999999999987754 434444
No 8
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.41 E-value=21 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHS 134 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~ 134 (823)
+++||+.++++..+-.++.++..+|++.+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 456666666655555555555555554443
No 9
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=57.72 E-value=35 Score=24.68 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSE 135 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~ 135 (823)
+.+||+..++++.+..++.+++..|+++-.-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556665555555555555555555554443
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.49 E-value=26 Score=28.69 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVL 143 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL 143 (823)
++.+|+..+.+..++++...+.++.|++++++.++....|
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999998888888888888888888888777755443
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.80 E-value=39 Score=24.43 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
.+.++|++.+++..+..+|+++...|...-+.|++
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46778888888888888888888888776666654
No 12
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.63 E-value=41 Score=23.42 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQR 131 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~ 131 (823)
+++||+.++++-.+-.++.++..+|++
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555554444444444444444433
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=49.78 E-value=27 Score=21.96 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 003392 113 GDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 113 ~~le~~l~~l~~~~~~L~~~~ 133 (823)
+++++++.+++++..+|++++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666555555544
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.06 E-value=30 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 115 LEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
+|..+.++.++...|+.+...+.+
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444445555555555555555443
No 15
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=47.42 E-value=1.3e+02 Score=25.79 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 101 ~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
...+..+|-..+.+..+-+..+..+...+.++.+.+++..--
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~ 83 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLS 83 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999988886443
No 16
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=51.29 E-value=4.4 Score=29.22 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.1
Q ss_pred CCCCCCccccccCc
Q 003392 12 CCPPMDLFRSEPMQ 25 (823)
Q Consensus 12 ~~~~~s~fRSe~M~ 25 (823)
-|+|-|+.|||-|.
T Consensus 38 ecdmesiirselmd 51 (52)
T 2lqh_B 38 ECDMESIIRSELMD 51 (52)
Confidence 58899999999885
No 17
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.20 E-value=39 Score=23.16 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 115 LEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
+|.++.++.++.+.|+++...|.+
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444555555555555554443
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.19 E-value=32 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 114 DLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
++|+++.++.++.++|+++...|.+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445555566666666666665544
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.03 E-value=73 Score=36.39 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 110 VKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 110 ~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
++.+++++++++..++..+++++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHH
Confidence 333333333333333333333333
No 20
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=39.21 E-value=62 Score=22.30 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 115 LEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
++..+.++.++...|..+..++.+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333444444555555554444433
No 21
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=39.03 E-value=27 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 101 ADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 101 ~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
.-++.+++++-|+++.+++..+.++.++|++++.++++
T Consensus 18 rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 18 RGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp TEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999988887765
No 22
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=38.15 E-value=43 Score=23.04 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 114 DLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
++|.++.++.++...|+++...|++
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455555555666655555544
No 23
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=38.12 E-value=63 Score=22.08 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 114 DLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
++|.++.++.++.+.|+++...|++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455556666666666666666655
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.54 E-value=27 Score=26.80 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003392 99 TRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHS 134 (823)
Q Consensus 99 ~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~ 134 (823)
.|...+++.|..+.+++..++..+.++.++|++++.
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777776666666666554
No 25
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.25 E-value=49 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
..+|+++.++..-++++.++.++|+...
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777776554
No 26
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.93 E-value=57 Score=22.27 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
++++|+.++++-++=.++.++..+|++-+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56777777777777777777777776543
No 27
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.60 E-value=1.6e+02 Score=24.77 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 112 LGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
+.++..++.++.+.++.+..++.+|++..
T Consensus 58 ~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 58 TQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455666777777777777777776543
No 28
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=35.23 E-value=74 Score=21.73 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~ 132 (823)
+++||+.++++-++..++.++..+|++-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5778888888878888888887777654
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.74 E-value=75 Score=21.84 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 113 GDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 113 ~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
+++|.++.++..+.+.|+++...|.+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345555666667777777766666553
No 30
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=33.52 E-value=2e+02 Score=23.55 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003392 282 QAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTL 333 (823)
Q Consensus 282 ~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l 333 (823)
...++.+..+.+++.++.+++.++...+.++.. +-..+..+..|.+.|..+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~-LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQE-LLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344566667777777777766666666655533 334455677777777644
No 31
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.11 E-value=94 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~ 137 (823)
+++++..++.++++-.++..+++.|+.+...|.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555544
No 32
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.02 E-value=77 Score=21.84 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~ 132 (823)
+++||+.++++-++-.++.++..+|++-
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5677777777777777777777777654
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.86 E-value=57 Score=22.33 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~ 132 (823)
++++|+.++++-++-.++.++..+|++-
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4677777777777777777777777654
No 34
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.71 E-value=91 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
+++||+.++++-.+-.++.++..+|++-+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 67778888777777777777777777644
No 35
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=31.38 E-value=27 Score=31.10 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.1
Q ss_pred cccCceEEEEeccccHHHHHHHhhccCc
Q 003392 21 SEPMQLVQIIIPIESAHLTVSYLGELGL 48 (823)
Q Consensus 21 Se~M~~~~li~~~e~a~~~v~~Lg~lg~ 48 (823)
|.+|+++..|++.+..+++.++|.+.|.
T Consensus 2 ~~~Mk~I~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 2 PGSMKLVTVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp --CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 5579999999999999999999999985
No 36
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.36 E-value=1.5e+02 Score=23.11 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003392 286 EVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTL 333 (823)
Q Consensus 286 ~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l 333 (823)
+++..+.+++.++.+++.++...+.++.. +-..+..+..|.+.|..+
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~-LlniK~~Le~EIatYRkL 50 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGD-LLNVKMALDIEIATYRKL 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH
Confidence 34445555555555555555554444432 233344566777777643
No 37
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=31.22 E-value=3.1e+02 Score=25.18 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
.+.++.+..+++..++..+.++++.|+....++.|....++
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~ 50 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLE 50 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777444444444444433
No 38
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.22 E-value=1.3e+02 Score=26.29 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 102 DNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 102 ~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
......+++..+.++.++..+.++.+.+++++++++...
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666777777777777777777777666543
No 39
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.96 E-value=86 Score=21.56 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~ 132 (823)
+++||+.++++-.+=.++.++.++|+.-
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5666666666666666666666666543
No 40
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.68 E-value=98 Score=22.46 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQR 131 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~ 131 (823)
++.+..++.+.++++.++..+...|++
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554
No 41
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=30.48 E-value=3.3e+02 Score=25.13 Aligned_cols=74 Identities=11% Similarity=0.175 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------HcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 70 KKCAEMARKLRFFKEQML-------KAGILSSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 70 ~r~eE~~~kl~~l~~~l~-------k~~i~~~~~~~~~~~~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
.+++.+..+++-|.+.++ +.++. |....++.+.++++....++..+.+.++..+-.+... |-..
T Consensus 21 ~~sd~LvtkVDDLQD~VE~LRkDV~~Rgvr-------P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKi--WE~E 91 (141)
T 3okq_A 21 DLSDTLLSKVDDLQDVIEIMRKDVAERRSQ-------PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKT--WEAE 91 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHH--HHHH
Confidence 345555555555555544 44543 3555677777888888888888888888887777766 3334
Q ss_pred HHHH---hhhhhh
Q 003392 143 LQKA---GEFFSS 152 (823)
Q Consensus 143 L~~~---~~~l~~ 152 (823)
|++. +.||+.
T Consensus 92 L~~VceEQqfl~~ 104 (141)
T 3okq_A 92 LDKVCEEQQFLTL 104 (141)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4432 445553
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.23 E-value=86 Score=21.85 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 112 LGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
.++++..+.++.++...|+.+..+|.+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4677788888888888888887777664
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.55 E-value=1.3e+02 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
+++|+.+++.++.+-.++..+++.|+.+...|..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544433
No 44
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=29.37 E-value=29 Score=31.30 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=27.6
Q ss_pred CCCCCCCccccccCceEEEEeccccHHHHHHHhhccCc
Q 003392 11 GCCPPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGL 48 (823)
Q Consensus 11 ~~~~~~s~fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~ 48 (823)
|..|.|+.-...+|+++.+|+..+..+++.++|.+.|+
T Consensus 12 ~~~~~~~~m~~~~mK~I~aIIr~~k~e~V~~aL~~~Gi 49 (119)
T 2cz4_A 12 GLVPRGSHMDLVPLKLVTIVAESLLEKRLVEEVKRLGA 49 (119)
T ss_dssp --------CCEEEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred ccCcchhhCCcCCcEEEEEEECHHHHHHHHHHHHhCCC
Confidence 45566655556789999999999999999999999985
No 45
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.36 E-value=74 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 114 DLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
++|.++.++.++...|+++...|++
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4445555566666666666665544
No 46
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.30 E-value=1.1e+02 Score=21.01 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
++++|+.++++-++..++.++..+|++-+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 57777777777777777777777776543
No 47
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.84 E-value=1.2e+02 Score=25.00 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 003392 71 KCAEMARKLRFFKE 84 (823)
Q Consensus 71 r~eE~~~kl~~l~~ 84 (823)
|++++|.|+.|.++
T Consensus 15 Ri~~LE~klAfqE~ 28 (78)
T 3efg_A 15 RLVELETRLSFQEQ 28 (78)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 48
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.99 E-value=1e+02 Score=21.18 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRA 132 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~ 132 (823)
+++||+.++++-++=.++.++..+|++-
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4666676666666666666666666653
No 49
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.98 E-value=63 Score=27.92 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 103 ~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
.....+++..+.++.++..+.++.+.+++++++++..
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777777777777766666543
No 50
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.39 E-value=1.3e+02 Score=21.03 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 112 LGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
.++++.++.++.++...|+.+..+|++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3577888888888888888888877664
No 51
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.47 E-value=2.8e+02 Score=22.99 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSELV 137 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~ 137 (823)
.+|++.+++++++-.++..+++.|+.+..+|+
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666666666666666554
No 52
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.10 E-value=1.5e+02 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
++++.++++++++-.++..+++.|+.+...|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 53
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.48 E-value=97 Score=25.29 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHS 134 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~ 134 (823)
.+++++.++.+..+.+..|+++++
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 54
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.72 E-value=1.7e+02 Score=26.89 Aligned_cols=6 Identities=0% Similarity=-0.258 Sum_probs=3.2
Q ss_pred EEEEec
Q 003392 27 VQIIIP 32 (823)
Q Consensus 27 ~~li~~ 32 (823)
|+|.++
T Consensus 19 Y~i~g~ 24 (138)
T 3hnw_A 19 IKLGGY 24 (138)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 455554
No 55
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.62 E-value=2.1e+02 Score=24.65 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 114 DLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
+++.|+.++.+++..|+....+++-+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444444444333
No 56
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.59 E-value=98 Score=21.29 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 114 DLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 114 ~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
+++..+.++.++...|+.+..+|.+
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455555556666655555544
No 57
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.88 E-value=1.5e+02 Score=20.37 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAH 133 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~ 133 (823)
+++||+.++++-++=.++.++..+|++-+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45666666666666666666666666543
No 58
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.54 E-value=60 Score=25.17 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQR 131 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~ 131 (823)
++++.++++.+.++..++.++++++++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444555555554444443
No 59
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=23.03 E-value=1.6e+02 Score=29.65 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKL 141 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~ 141 (823)
-+|++|+.++++++++.++.+..+..++++..+++...
T Consensus 7 Rvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~ 44 (233)
T 2yko_A 7 RCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQ 44 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999998888888888777766544
No 60
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.92 E-value=4e+02 Score=23.69 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
.+.++.+..+++..++..+.++.+.++..+.++++.+..|+.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888889999999999998888888887766654
No 61
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.87 E-value=1.1e+02 Score=24.83 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
.+||..+.+++....++..+.+.|+.++..|
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 62
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.49 E-value=4.1e+02 Score=24.76 Aligned_cols=41 Identities=15% Similarity=-0.047 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 105 TDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 105 l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
+.+++++++...+.+..+++++..|+-+.+.+++...-|++
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666777777777777777666666555
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.41 E-value=53 Score=28.20 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003392 107 DLEVKLGDLEAELVEINANGDKLQRAHSELVE 138 (823)
Q Consensus 107 ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e 138 (823)
..+.++.++..++.++.....++..+++.+.+
T Consensus 53 ~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 53 LYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777777666666544
No 64
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=22.20 E-value=60 Score=29.83 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=29.4
Q ss_pred CccccccCceEEEEeccccHHHHHHHhhccCc
Q 003392 17 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGL 48 (823)
Q Consensus 17 s~fRSe~M~~~~li~~~e~a~~~v~~Lg~lg~ 48 (823)
..|=+.+|+++..|++.+..+++.++|.+.|.
T Consensus 6 ~~~~~~~MK~I~AIIr~~k~~~V~~AL~~~G~ 37 (135)
T 2o66_A 6 DYIPDSKFYKVEAIVRPWRIQQVSSALLKIGI 37 (135)
T ss_dssp SCSSCCSEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcCCCCCeEEEEEEECHHHHHHHHHHHHHCCC
Confidence 46778899999999999999999999999984
No 65
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.67 E-value=3.5e+02 Score=22.53 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003392 282 QAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQFEQWNLLVKKEKSIYHTL 333 (823)
Q Consensus 282 ~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ek~i~~~l 333 (823)
..+++++..|.+++.++.+++.++...+..+.. +-..+..+..|.+.|..+
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~-LlnvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQE-LLDIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHH
Confidence 345566666667777777666666665555533 333455566777777643
No 66
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.61 E-value=2.6e+02 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003392 106 DDLEVKLGDLEAELVEINANGDKLQR 131 (823)
Q Consensus 106 ~ele~~l~~le~~l~~l~~~~~~L~~ 131 (823)
+++++.+.++|.++.-+.+.+++|..
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~ 35 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSE 35 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333
No 67
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.34 E-value=1.4e+02 Score=22.71 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003392 107 DLEVKLGDLEAELVEI 122 (823)
Q Consensus 107 ele~~l~~le~~l~~l 122 (823)
+++.++++++.++..-
T Consensus 16 KLek~ID~LEdeL~~e 31 (52)
T 2z5i_A 16 RLKKLVDDLEDELYAQ 31 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344444333333
No 68
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.34 E-value=2.2e+02 Score=22.28 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
.+++++.++..+.+....|.+++..|.+...-|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888888888777776655443
No 69
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.98 E-value=2.3e+02 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003392 111 KLGDLEAELVEINANGDKLQRAHSELVEYKLVLQ 144 (823)
Q Consensus 111 ~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~ 144 (823)
..++++.++.++.+..+.|+.+++.|+.....|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788888888888888777776655443
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.90 E-value=3.7e+02 Score=22.41 Aligned_cols=31 Identities=26% Similarity=0.132 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 003392 112 LGDLEAELVEINANGDKLQRAHSELVEYKLV 142 (823)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~~l~e~~~v 142 (823)
++++++++.+..+.++-|+-++.+|++....
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554443
No 71
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=20.34 E-value=60 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred cCceEEEEeccccHHHHHHHhhccCc
Q 003392 23 PMQLVQIIIPIESAHLTVSYLGELGL 48 (823)
Q Consensus 23 ~M~~~~li~~~e~a~~~v~~Lg~lg~ 48 (823)
+|+++..|++.+..+++.++|.+.|.
T Consensus 2 ~Mk~I~aIIr~~~~~~v~~aL~~~G~ 27 (114)
T 3bzq_A 2 HMKLITAIVKPFTLDDVKTSLEDAGV 27 (114)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CcEEEEEEECHHHHHHHHHHHHHCCC
Confidence 59999999999999999999999884
No 72
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.16 E-value=4e+02 Score=29.08 Aligned_cols=26 Identities=4% Similarity=-0.019 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003392 62 QRTYAAQIKKCAEMARKLRFFKEQML 87 (823)
Q Consensus 62 ~r~~~~~i~r~eE~~~kl~~l~~~l~ 87 (823)
++...+.++++|++.+++.-+.+...
T Consensus 33 e~~V~~~l~~LE~~l~elsn~ts~v~ 58 (409)
T 1m1j_C 33 RLTTDGELLEIEGLLQQATNSTGSIE 58 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666654444443
No 73
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.05 E-value=1.9e+02 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 003392 112 LGDLEAELVEINANGDKLQRAHSEL 136 (823)
Q Consensus 112 l~~le~~l~~l~~~~~~L~~~~~~l 136 (823)
+++..+++..+.++.+.|+++..+|
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555444433
Done!