Query 003392
Match_columns 823
No_of_seqs 208 out of 959
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 23:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7la_ e.57.1.1 (A:) Vacuolar 77.5 40 0.0029 34.1 27.2 158 191-367 184-344 (388)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 63.1 41 0.003 28.3 14.8 42 104-145 2-43 (133)
3 d1imta1 g.3.10.1 (A:1-36) Inte 36.0 2.2 0.00016 27.6 -1.0 18 8-25 14-31 (36)
4 d2cz4a1 d.58.5.1 (A:1-100) Hyp 27.0 16 0.0012 29.7 2.7 27 22-48 4-30 (100)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 22.7 56 0.0041 27.6 5.6 12 76-87 69-80 (129)
6 d1qvra2 c.37.1.20 (A:149-535) 21.8 1.1E+02 0.0082 30.5 8.8 45 103-147 282-326 (387)
7 d1ykhb1 a.252.1.1 (B:2-130) RN 21.2 1.5E+02 0.011 24.7 8.2 39 277-315 86-124 (129)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 18.3 1.7E+02 0.012 22.4 7.3 36 104-139 46-81 (88)
9 d1seta1 a.2.7.1 (A:1-110) Sery 17.6 96 0.007 24.9 5.9 26 115-140 69-94 (110)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 16.3 84 0.0061 24.6 4.9 28 279-306 28-55 (89)
No 1
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=77.51 E-value=40 Score=34.07 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=80.8
Q ss_pred cceEEEEEEEEcCCCHHHHHHHHHHhhcCcEEEEeeccCCccccCCCCcccceEEE-EEEEeChhhHHHHHHhhhccCcE
Q 003392 191 QIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVVDEPVVDPVSGEKMEKNVF-VVFYSGERAKNKILKICDAFGAN 269 (823)
Q Consensus 191 ~~~~~~~~G~I~~~~~~~f~~~l~r~~~~~~~~~~~~i~~~~~~~~~~~~~~k~v~-vv~~~~~~~~~~v~~i~~~~~~~ 269 (823)
+.++..++=.||+.....|.+.- +..-..+.-+.. ..+ . ++.+...| |++| +...++....|++.+|.
T Consensus 184 SEyLtTllVvVPk~~~~dwl~~Y-EtL~~~VVPrSs----~~i---~-~D~e~~L~~VtlF--kk~~~eF~~~aRE~kf~ 252 (388)
T d1u7la_ 184 SEHLTTVLVAVPKSLKSDFEKSY-ETLSKNVVPASA----SVI---A-EDAEYVLFNVHLF--KKNVQEFTTAAREKKFI 252 (388)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHHG-GGSSTTBCTTCC----EEE---E-ECSSEEEEEEEEE--GGGHHHHHHHHHHTTCE
T ss_pred cccceEEEEEeecccHHHHHHHH-hhhcCcccCChh----hhc---e-ecCCeeEEEEEEE--hhhHHHHHHHHHHcCcc
Confidence 45788888899999999998763 333232111100 001 0 11123334 3444 45667788888888877
Q ss_pred EeeCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhccccccccCcEEEE
Q 003392 270 RYPFNEEFDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTI-GDQFEQWNLLVKKEKS-IYHTLNMLSLDVTKKCLVG 347 (823)
Q Consensus 270 ~~~~p~~~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~-~~~l~~~~~~~~~ek~-i~~~l~~~~~~~t~~~~~~ 347 (823)
.=++--+. +..++..+++++++++.++....+...++.. .+....|.-. .-.+. +..+| +++---+...+
T Consensus 253 vRdF~y~e----e~~~~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiHi-KalRvFVESVL---RYGLP~~F~~~ 324 (388)
T d1u7la_ 253 PREFNYSE----ELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHI-KALRVYVESVL---RYGLPPHFNIK 324 (388)
T ss_dssp EECCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHCSSCCEEEE
T ss_pred cccccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhh---hcCCCccceEE
Confidence 55553222 2333444444444444444333343433332 2333344322 11111 22233 34443343344
Q ss_pred EEEeecCCHHHHHHHHHhhh
Q 003392 348 EGWSPVFATKQIQDALERAA 367 (823)
Q Consensus 348 ~GWvP~~~~~~l~~~l~~~~ 367 (823)
--..+.+..+++++.|.+.-
T Consensus 325 li~p~~k~~kklr~~L~~~f 344 (388)
T d1u7la_ 325 IIAVPPKNLSKCKSELIDAF 344 (388)
T ss_dssp EEEECTTCHHHHHHHHHHHH
T ss_pred EEeeCCchHHHHHHHHHHHh
Confidence 44577889999999998764
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=63.13 E-value=41 Score=28.26 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQK 145 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~ 145 (823)
++++|..+++.+++++..+.++++.++....++...++.|+.
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~ 43 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999999999999999999988888877766553
No 3
>d1imta1 g.3.10.1 (A:1-36) Intestinal toxin 1 {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
Probab=36.00 E-value=2.2 Score=27.63 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.6
Q ss_pred CCCCCCCCCCccccccCc
Q 003392 8 GGGGCCPPMDLFRSEPMQ 25 (823)
Q Consensus 8 ~~~~~~~~~s~fRSe~M~ 25 (823)
|||-||..+=+.||-+|+
T Consensus 14 g~g~CCAvSlW~r~lR~C 31 (36)
T d1imta1 14 GKGTCCAVSLWIKSVRVC 31 (36)
T ss_dssp CTTEEEEECSSCTTCEEE
T ss_pred CCccEeeehhhhhhceee
Confidence 567899999999998886
No 4
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=27.03 E-value=16 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=24.2
Q ss_pred ccCceEEEEeccccHHHHHHHhhccCc
Q 003392 22 EPMQLVQIIIPIESAHLTVSYLGELGL 48 (823)
Q Consensus 22 e~M~~~~li~~~e~a~~~v~~Lg~lg~ 48 (823)
.+|+++.+++..+.++++.++|.+.|.
T Consensus 4 ~~mK~v~iIv~~~~~~~v~~~L~~~Gv 30 (100)
T d2cz4a1 4 VPLKLVTIVAESLLEKRLVEEVKRLGA 30 (100)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred cceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999883
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.67 E-value=56 Score=27.63 Aligned_cols=12 Identities=8% Similarity=0.276 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 003392 76 ARKLRFFKEQML 87 (823)
Q Consensus 76 ~~kl~~l~~~l~ 87 (823)
.+.+++|.+.++
T Consensus 69 akqId~LI~sLP 80 (129)
T d1ykhb1 69 TRQINKLIDSLP 80 (129)
T ss_dssp HHHHHHHHHHST
T ss_pred HhhHHHHHHhCC
Confidence 555666666443
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=21.83 E-value=1.1e+02 Score=30.51 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 003392 103 NNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAG 147 (823)
Q Consensus 103 ~~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~~~vL~~~~ 147 (823)
..+++++.+++.+++++.++.++.++.+..++++.+.+.-++.++
T Consensus 282 ~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr 326 (387)
T d1qvra2 282 ERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVR 326 (387)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666665555555554443
No 7
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.15 E-value=1.5e+02 Score=24.66 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 277 FDKQAQAISEVSGRLSELKTTLDAGLLHRGNLLQTIGDQ 315 (823)
Q Consensus 277 ~~~~~~~l~~l~~~i~~~~~~l~~~~~~~~~~l~~~~~~ 315 (823)
...-.+.+++++++.++.++++++..++.+++++.+...
T Consensus 86 ee~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~ 124 (129)
T d1ykhb1 86 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888877776666666655443
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.34 E-value=1.7e+02 Score=22.37 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003392 104 NTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEY 139 (823)
Q Consensus 104 ~l~ele~~l~~le~~l~~l~~~~~~L~~~~~~l~e~ 139 (823)
.+...-+.+..+.+++..+..+.+.|+++...|...
T Consensus 46 iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~ 81 (88)
T d1nkpa_ 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666666666555443
No 9
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=17.62 E-value=96 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003392 115 LEAELVEINANGDKLQRAHSELVEYK 140 (823)
Q Consensus 115 le~~l~~l~~~~~~L~~~~~~l~e~~ 140 (823)
+-++..++.++++.++++.+++++..
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~l 94 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEARL 94 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665543
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.28 E-value=84 Score=24.62 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003392 279 KQAQAISEVSGRLSELKTTLDAGLLHRG 306 (823)
Q Consensus 279 ~~~~~l~~l~~~i~~~~~~l~~~~~~~~ 306 (823)
.....+.+++..+++.+..+++..-+.+
T Consensus 28 erk~~l~~ie~~leEA~ell~qMelEvr 55 (89)
T d1vcsa1 28 EKKQMVANVEKQLEEARELLEQMDLEVR 55 (89)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6678888899999988888886555444
Done!