Query 003393
Match_columns 823
No_of_seqs 775 out of 4208
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 23:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.4E-39 1.5E-43 362.4 42.4 513 186-806 63-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.3E-39 2.8E-43 360.2 42.6 523 147-782 63-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 5.4E-29 1.9E-33 266.1 24.8 204 266-469 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 6.2E-29 2.1E-33 265.6 25.2 213 195-434 9-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-24 5.1E-29 229.2 48.8 359 361-765 8-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-24 7.9E-29 227.7 48.7 376 393-814 5-380 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.6E-23 9E-28 229.0 40.3 274 492-806 186-483 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.6E-21 5.5E-26 214.7 39.9 439 284-767 8-479 (514)
9 3fp2_A TPR repeat-containing p 99.9 2.5E-21 8.4E-26 214.5 40.4 447 283-807 26-497 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.5E-20 5.1E-25 203.1 40.8 352 351-806 25-415 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.2E-19 4E-24 196.0 42.2 319 456-807 25-364 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.8E-19 6E-24 199.6 40.6 432 245-767 24-492 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 1.4E-15 5E-20 171.3 68.6 571 136-793 984-1584(1630)
14 2xm6_A Protein corresponding t 99.9 5.8E-17 2E-21 176.2 50.9 162 632-804 291-470 (490)
15 3ieg_A DNAJ homolog subfamily 99.8 1.1E-17 3.7E-22 174.4 40.6 319 456-807 2-341 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 9.3E-15 3.2E-19 164.8 63.8 441 174-681 951-1415(1630)
17 2xm6_A Protein corresponding t 99.8 5.6E-16 1.9E-20 168.4 52.3 358 351-804 38-435 (490)
18 3ieg_A DNAJ homolog subfamily 99.8 3E-16 1E-20 163.4 40.2 299 212-520 4-334 (359)
19 3hym_B Cell division cycle pro 99.8 1.3E-16 4.4E-21 164.1 33.5 169 634-805 127-303 (330)
20 2ooe_A Cleavage stimulation fa 99.8 2.1E-15 7.1E-20 165.8 45.2 433 340-804 2-495 (530)
21 2ooe_A Cleavage stimulation fa 99.8 6.4E-15 2.2E-19 161.8 45.9 219 475-731 256-492 (530)
22 3hym_B Cell division cycle pro 99.8 3E-16 1E-20 161.3 32.9 154 633-789 160-322 (330)
23 1b89_A Protein (clathrin heavy 99.8 2.3E-16 7.9E-21 159.6 27.1 284 148-479 14-304 (449)
24 1fch_A Peroxisomal targeting s 99.7 4.6E-16 1.6E-20 162.7 26.4 310 431-800 34-358 (368)
25 4g1t_A Interferon-induced prot 99.7 3.8E-15 1.3E-19 161.6 34.2 303 436-807 152-465 (472)
26 1b89_A Protein (clathrin heavy 99.7 1.1E-15 3.7E-20 154.7 25.7 236 263-540 19-254 (449)
27 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6E-22 180.9 13.6 118 282-399 127-248 (1134)
28 3mkr_A Coatomer subunit epsilo 99.7 2E-15 6.8E-20 150.6 26.7 202 596-807 64-270 (291)
29 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.1E-22 181.4 12.0 154 242-401 123-286 (1134)
30 1fch_A Peroxisomal targeting s 99.7 2.3E-15 7.7E-20 157.4 28.2 289 293-586 36-354 (368)
31 4eqf_A PEX5-related protein; a 99.7 5.6E-16 1.9E-20 161.8 21.9 163 634-799 179-354 (365)
32 4eqf_A PEX5-related protein; a 99.7 5E-16 1.7E-20 162.2 20.4 264 493-760 66-350 (365)
33 3cv0_A Peroxisome targeting si 99.7 7.4E-15 2.5E-19 150.6 27.5 282 458-802 22-316 (327)
34 4g1t_A Interferon-induced prot 99.7 1.1E-13 3.6E-18 150.2 34.2 384 317-768 51-461 (472)
35 3cv0_A Peroxisome targeting si 99.7 2.6E-14 8.9E-19 146.5 27.2 232 212-450 22-268 (327)
36 3mkr_A Coatomer subunit epsilo 99.6 1.2E-13 4.2E-18 137.5 29.6 254 396-695 8-263 (291)
37 2pl2_A Hypothetical conserved 99.6 4.6E-14 1.6E-18 134.3 22.3 196 598-799 6-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 2.3E-13 7.7E-18 134.0 25.1 227 527-802 5-237 (258)
39 1ouv_A Conserved hypothetical 99.6 2.1E-12 7.2E-17 128.2 30.2 231 526-805 5-255 (273)
40 2ho1_A Type 4 fimbrial biogene 99.6 6.4E-13 2.2E-17 130.2 25.3 205 598-806 38-243 (252)
41 2h6f_A Protein farnesyltransfe 99.6 1.4E-12 4.9E-17 134.2 27.6 251 527-821 97-367 (382)
42 3uq3_A Heat shock protein STI1 99.6 1.6E-12 5.5E-17 127.8 27.1 224 493-765 6-235 (258)
43 2q7f_A YRRB protein; TPR, prot 99.6 4E-13 1.4E-17 130.9 22.3 204 599-807 25-228 (243)
44 2vq2_A PILW, putative fimbrial 99.5 2.2E-12 7.4E-17 123.9 26.4 207 597-806 8-216 (225)
45 3e4b_A ALGK; tetratricopeptide 99.5 7.4E-13 2.5E-17 141.2 24.7 223 529-799 178-419 (452)
46 4e6h_A MRNA 3'-END-processing 99.5 2.4E-10 8.3E-15 125.6 44.8 446 334-806 49-575 (679)
47 3u4t_A TPR repeat-containing p 99.5 1.1E-12 3.6E-17 130.3 23.7 244 529-813 5-261 (272)
48 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-12 1.1E-16 136.2 28.5 242 297-557 89-352 (452)
49 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-12 5.5E-17 120.2 21.6 171 631-805 4-174 (184)
50 1ouv_A Conserved hypothetical 99.5 4.7E-11 1.6E-15 118.4 32.5 229 491-768 5-253 (273)
51 2pl2_A Hypothetical conserved 99.5 2.3E-12 8E-17 122.4 21.4 59 285-344 8-66 (217)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.1E-12 1.8E-16 125.6 24.7 203 600-808 46-251 (275)
53 4e6h_A MRNA 3'-END-processing 99.5 2E-09 7E-14 118.3 46.0 148 266-415 51-222 (679)
54 2h6f_A Protein farnesyltransfe 99.5 1.6E-11 5.4E-16 126.4 27.5 249 492-784 97-365 (382)
55 4a1s_A PINS, partner of inscut 99.5 1.6E-12 5.4E-17 138.0 20.4 279 497-807 53-378 (411)
56 3u4t_A TPR repeat-containing p 99.5 6.8E-12 2.3E-16 124.5 23.6 251 493-783 4-266 (272)
57 3sf4_A G-protein-signaling mod 99.4 5.4E-12 1.9E-16 133.6 22.0 303 456-790 8-365 (406)
58 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.5E-12 8.6E-17 127.8 18.2 246 295-550 18-269 (275)
59 3ro2_A PINS homolog, G-protein 99.4 3.3E-12 1.1E-16 131.2 18.7 276 494-805 7-336 (338)
60 2ho1_A Type 4 fimbrial biogene 99.4 7.5E-11 2.6E-15 115.3 27.1 199 354-556 39-238 (252)
61 3sf4_A G-protein-signaling mod 99.4 1.2E-11 4.1E-16 130.9 23.0 281 489-805 6-340 (406)
62 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-11 5.2E-16 119.5 21.8 214 526-780 22-235 (243)
63 2vq2_A PILW, putative fimbrial 99.4 9.6E-11 3.3E-15 112.2 27.0 202 210-415 7-210 (225)
64 4abn_A Tetratricopeptide repea 99.4 5.3E-11 1.8E-15 127.7 25.6 195 596-797 101-317 (474)
65 4abn_A Tetratricopeptide repea 99.4 2.2E-11 7.6E-16 130.7 22.2 189 613-806 84-292 (474)
66 2ond_A Cleavage stimulation fa 99.4 6.1E-10 2.1E-14 112.3 31.0 192 612-806 79-275 (308)
67 3vtx_A MAMA; tetratricopeptide 99.4 1.1E-10 3.9E-15 107.6 23.4 171 596-772 4-174 (184)
68 4a1s_A PINS, partner of inscut 99.4 1.2E-11 4.1E-16 131.2 18.4 271 465-766 56-372 (411)
69 3nf1_A KLC 1, kinesin light ch 99.4 4.7E-12 1.6E-16 128.5 14.2 250 526-804 26-310 (311)
70 3ulq_A Response regulator aspa 99.4 7.8E-11 2.7E-15 123.4 23.6 238 533-804 109-371 (383)
71 4i17_A Hypothetical protein; T 99.3 1.1E-10 3.7E-15 112.1 22.2 209 597-819 7-225 (228)
72 3as5_A MAMA; tetratricopeptide 99.3 5.2E-11 1.8E-15 110.0 19.1 170 633-806 9-178 (186)
73 4gyw_A UDP-N-acetylglucosamine 99.3 2.7E-11 9.2E-16 135.0 19.4 168 631-803 8-176 (723)
74 3ro2_A PINS homolog, G-protein 99.3 5.4E-11 1.8E-15 122.1 20.2 279 459-766 7-332 (338)
75 3ulq_A Response regulator aspa 99.3 2.7E-10 9.4E-15 119.2 24.7 230 498-765 109-367 (383)
76 2ond_A Cleavage stimulation fa 99.3 5.5E-09 1.9E-13 105.3 30.2 131 634-766 136-270 (308)
77 1hz4_A MALT regulatory protein 99.3 3.3E-09 1.1E-13 110.5 28.9 271 495-765 17-321 (373)
78 3q15_A PSP28, response regulat 99.3 1.4E-09 4.7E-14 113.5 25.9 198 600-801 144-365 (378)
79 3nf1_A KLC 1, kinesin light ch 99.2 4.1E-11 1.4E-15 121.5 13.8 245 492-765 27-306 (311)
80 3edt_B KLC 2, kinesin light ch 99.2 2E-10 6.8E-15 114.4 16.2 229 573-801 12-281 (283)
81 1hz4_A MALT regulatory protein 99.2 8.8E-09 3E-13 107.3 29.2 266 465-730 22-321 (373)
82 4gyw_A UDP-N-acetylglucosamine 99.2 7.3E-10 2.5E-14 123.5 21.9 165 596-765 8-173 (723)
83 3mv2_B Coatomer subunit epsilo 99.2 8.2E-09 2.8E-13 100.2 26.3 185 616-807 85-288 (310)
84 1qqe_A Vesicular transport pro 99.2 1.1E-09 3.8E-14 109.3 20.2 172 632-805 77-273 (292)
85 3q15_A PSP28, response regulat 99.2 3.3E-09 1.1E-13 110.6 24.4 230 497-765 106-364 (378)
86 3as5_A MAMA; tetratricopeptide 99.2 2.6E-09 8.8E-14 98.4 20.6 165 598-766 9-173 (186)
87 4i17_A Hypothetical protein; T 99.2 3.5E-09 1.2E-13 101.4 22.0 207 560-779 5-221 (228)
88 1qqe_A Vesicular transport pro 99.1 1.6E-09 5.3E-14 108.2 18.3 180 612-808 32-235 (292)
89 3urz_A Uncharacterized protein 99.1 3.1E-09 1.1E-13 99.9 18.6 161 639-805 11-190 (208)
90 3qky_A Outer membrane assembly 99.1 6.2E-09 2.1E-13 102.1 21.4 174 631-807 14-230 (261)
91 2fo7_A Synthetic consensus TPR 99.1 5.5E-09 1.9E-13 90.3 18.3 133 669-804 3-135 (136)
92 2pzi_A Probable serine/threoni 99.0 2.8E-09 9.5E-14 119.8 17.1 172 608-787 402-583 (681)
93 3rjv_A Putative SEL1 repeat pr 99.0 2.2E-08 7.5E-13 94.3 19.9 179 615-805 4-201 (212)
94 3edt_B KLC 2, kinesin light ch 99.0 6.6E-09 2.3E-13 103.3 16.5 232 504-765 13-280 (283)
95 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.1E-08 1.4E-12 93.6 20.7 188 599-806 6-218 (225)
96 2uy1_A Cleavage stimulation fa 99.0 1E-06 3.5E-11 94.2 33.6 45 511-556 198-242 (493)
97 4ga2_A E3 SUMO-protein ligase 99.0 2.5E-09 8.7E-14 94.2 10.4 128 674-805 4-133 (150)
98 2ifu_A Gamma-SNAP; membrane fu 99.0 1.7E-08 5.7E-13 101.6 17.8 168 638-807 42-229 (307)
99 2fo7_A Synthetic consensus TPR 99.0 4.7E-08 1.6E-12 84.3 18.4 130 634-766 3-132 (136)
100 3urz_A Uncharacterized protein 99.0 2.5E-08 8.6E-13 93.6 17.7 169 604-779 11-197 (208)
101 3mv2_B Coatomer subunit epsilo 98.9 4.4E-07 1.5E-11 88.1 25.9 144 406-554 85-238 (310)
102 3qky_A Outer membrane assembly 98.9 4.2E-08 1.4E-12 96.2 19.2 189 598-790 16-250 (261)
103 2vsy_A XCC0866; transferase, g 98.9 2.2E-08 7.4E-13 110.7 19.0 152 611-766 3-157 (568)
104 2qfc_A PLCR protein; TPR, HTH, 98.9 2.9E-07 9.8E-12 91.8 24.6 182 634-815 77-280 (293)
105 4ga2_A E3 SUMO-protein ligase 98.9 3.9E-09 1.3E-13 93.0 9.7 145 638-787 3-149 (150)
106 3dra_A Protein farnesyltransfe 98.9 7E-07 2.4E-11 87.8 26.3 189 612-804 84-291 (306)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.8E-08 2E-12 91.7 18.1 125 635-765 9-149 (213)
108 2pzi_A Probable serine/threoni 98.9 1.1E-08 3.6E-13 115.1 15.0 163 643-811 402-573 (681)
109 2r5s_A Uncharacterized protein 98.9 1.6E-08 5.3E-13 92.2 13.0 161 635-800 9-172 (176)
110 3qou_A Protein YBBN; thioredox 98.9 4.6E-08 1.6E-12 97.0 16.7 166 631-800 116-283 (287)
111 2uy1_A Cleavage stimulation fa 98.9 3E-06 1E-10 90.6 31.7 205 543-765 195-412 (493)
112 4gco_A Protein STI-1; structur 98.8 8.4E-08 2.9E-12 81.3 14.5 103 703-807 14-116 (126)
113 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.1E-07 1.4E-11 86.5 20.7 188 561-769 3-216 (225)
114 3u3w_A Transcriptional activat 98.8 1.1E-06 3.6E-11 87.7 24.6 165 638-802 81-267 (293)
115 2vsy_A XCC0866; transferase, g 98.8 2.4E-07 8.3E-12 102.3 21.3 157 645-805 2-161 (568)
116 2ifu_A Gamma-SNAP; membrane fu 98.8 9E-08 3.1E-12 96.2 15.8 185 606-793 45-253 (307)
117 3gyz_A Chaperone protein IPGC; 98.8 1.7E-07 5.7E-12 81.9 15.0 101 702-805 36-137 (151)
118 2r5s_A Uncharacterized protein 98.8 8.7E-08 3E-12 87.1 13.3 160 602-765 11-172 (176)
119 2vgx_A Chaperone SYCD; alterna 98.7 5.1E-08 1.7E-12 85.5 11.1 105 701-807 20-124 (148)
120 3sz7_A HSC70 cochaperone (SGT) 98.7 1.9E-07 6.5E-12 83.7 14.6 117 702-820 11-127 (164)
121 3qou_A Protein YBBN; thioredox 98.7 2.4E-07 8.3E-12 91.8 16.2 148 664-815 114-263 (287)
122 3rjv_A Putative SEL1 repeat pr 98.7 1.4E-06 4.8E-11 81.8 20.6 175 336-522 5-198 (212)
123 2e2e_A Formate-dependent nitri 98.7 2.3E-07 8E-12 84.4 14.6 126 679-807 22-150 (177)
124 4f3v_A ESX-1 secretion system 98.7 3.1E-07 1.1E-11 87.9 15.2 197 609-813 18-247 (282)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.6E-06 5.6E-11 81.6 19.6 123 602-730 11-149 (213)
126 3dra_A Protein farnesyltransfe 98.7 1.3E-05 4.4E-10 78.8 26.2 217 299-520 50-286 (306)
127 1a17_A Serine/threonine protei 98.6 1.1E-06 3.8E-11 78.8 16.7 129 669-800 15-145 (166)
128 4gco_A Protein STI-1; structur 98.6 1E-06 3.4E-11 74.5 15.3 108 668-779 14-122 (126)
129 3u3w_A Transcriptional activat 98.6 4.9E-06 1.7E-10 82.8 22.9 164 602-765 80-265 (293)
130 2xcb_A PCRH, regulatory protei 98.6 4.3E-07 1.5E-11 79.0 12.4 102 703-806 19-120 (142)
131 3gw4_A Uncharacterized protein 98.6 4.5E-07 1.5E-11 84.7 13.3 158 644-802 4-177 (203)
132 3upv_A Heat shock protein STI1 98.6 1.3E-06 4.4E-11 74.1 14.7 98 703-802 5-102 (126)
133 3q7a_A Farnesyltransferase alp 98.6 2.1E-05 7.3E-10 78.0 25.3 197 612-812 104-342 (349)
134 3q49_B STIP1 homology and U bo 98.5 1.6E-06 5.6E-11 74.7 14.5 102 701-804 8-109 (137)
135 1na0_A Designed protein CTPR3; 98.5 3E-06 1E-10 71.4 15.9 100 704-805 11-110 (125)
136 4gcn_A Protein STI-1; structur 98.5 1.2E-06 3.9E-11 74.3 12.9 100 703-804 9-115 (127)
137 2c2l_A CHIP, carboxy terminus 98.5 5.1E-07 1.8E-11 89.1 12.3 194 598-802 5-200 (281)
138 1na0_A Designed protein CTPR3; 98.5 3E-06 1E-10 71.4 15.6 118 666-786 8-125 (125)
139 2vyi_A SGTA protein; chaperone 98.5 2.8E-06 9.4E-11 72.4 15.5 117 668-787 13-129 (131)
140 3dss_A Geranylgeranyl transfer 98.5 0.00019 6.6E-09 70.8 30.3 196 613-816 90-318 (331)
141 1p5q_A FKBP52, FK506-binding p 98.5 1.6E-06 5.4E-11 88.0 16.1 131 667-799 147-292 (336)
142 3gyz_A Chaperone protein IPGC; 98.5 2.1E-06 7.2E-11 74.9 14.6 97 667-766 36-133 (151)
143 2qfc_A PLCR protein; TPR, HTH, 98.5 3.6E-06 1.2E-10 83.7 18.4 163 603-765 81-265 (293)
144 2lni_A Stress-induced-phosphop 98.5 2.1E-06 7.2E-11 73.4 14.5 98 705-804 19-116 (133)
145 2hr2_A Hypothetical protein; a 98.5 1E-06 3.4E-11 75.8 12.0 101 705-807 14-137 (159)
146 1a17_A Serine/threonine protei 98.5 3.9E-06 1.3E-10 75.1 16.9 130 633-765 14-145 (166)
147 2lni_A Stress-induced-phosphop 98.5 2.2E-06 7.6E-11 73.3 14.5 120 665-787 14-133 (133)
148 1hxi_A PEX5, peroxisome target 98.5 9.1E-07 3.1E-11 74.2 11.4 100 704-806 19-119 (121)
149 2fbn_A 70 kDa peptidylprolyl i 98.5 3E-07 1E-11 85.5 8.5 157 643-803 15-188 (198)
150 2e2e_A Formate-dependent nitri 98.5 1E-06 3.5E-11 80.1 11.6 122 643-767 21-145 (177)
151 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.1E-11 81.0 12.9 156 609-765 4-175 (203)
152 1elw_A TPR1-domain of HOP; HOP 98.4 3.5E-06 1.2E-10 70.1 13.8 103 702-806 4-106 (118)
153 2dba_A Smooth muscle cell asso 98.4 3.9E-06 1.3E-10 73.4 14.4 103 701-806 27-133 (148)
154 4gcn_A Protein STI-1; structur 98.4 3E-06 1E-10 71.7 12.9 96 669-765 10-111 (127)
155 2vgx_A Chaperone SYCD; alterna 98.4 1.7E-06 5.9E-11 75.6 11.6 98 666-766 20-118 (148)
156 3q7a_A Farnesyltransferase alp 98.4 7.3E-05 2.5E-09 74.2 24.4 171 294-469 66-254 (349)
157 2kck_A TPR repeat; tetratricop 98.4 3.5E-06 1.2E-10 69.4 12.9 105 701-806 5-111 (112)
158 3rkv_A Putative peptidylprolyl 98.4 2.4E-06 8.2E-11 76.2 12.6 103 705-808 14-133 (162)
159 2vyi_A SGTA protein; chaperone 98.4 6.6E-06 2.2E-10 69.9 15.0 105 701-807 11-115 (131)
160 2xev_A YBGF; tetratricopeptide 98.4 4.8E-06 1.6E-10 70.8 13.9 98 706-806 6-110 (129)
161 3dss_A Geranylgeranyl transfer 98.4 4.8E-05 1.6E-09 75.2 22.3 187 614-805 47-271 (331)
162 1p5q_A FKBP52, FK506-binding p 98.4 8.9E-06 3E-10 82.5 16.8 132 631-765 146-293 (336)
163 1elr_A TPR2A-domain of HOP; HO 98.4 7.6E-06 2.6E-10 69.6 13.8 99 704-803 6-110 (131)
164 3upv_A Heat shock protein STI1 98.3 1.3E-05 4.3E-10 67.8 14.8 96 668-766 5-101 (126)
165 2c2l_A CHIP, carboxy terminus 98.3 3.3E-05 1.1E-09 76.0 19.7 165 631-805 3-168 (281)
166 3ro3_A PINS homolog, G-protein 98.3 2.7E-06 9.3E-11 75.7 10.7 136 669-804 11-161 (164)
167 1elw_A TPR1-domain of HOP; HOP 98.3 2.6E-05 9E-10 64.6 15.9 110 667-779 4-113 (118)
168 2fbn_A 70 kDa peptidylprolyl i 98.3 2.2E-06 7.4E-11 79.6 9.5 131 674-806 11-156 (198)
169 2xcb_A PCRH, regulatory protei 98.2 1.4E-05 4.9E-10 69.2 13.0 96 668-765 19-114 (142)
170 1elr_A TPR2A-domain of HOP; HO 98.2 9.6E-06 3.3E-10 68.9 11.6 110 668-780 5-120 (131)
171 3k9i_A BH0479 protein; putativ 98.2 1.3E-06 4.5E-11 72.8 5.3 90 715-805 3-94 (117)
172 3sz7_A HSC70 cochaperone (SGT) 98.2 3.2E-05 1.1E-09 69.0 14.7 97 632-730 11-107 (164)
173 4b4t_Q 26S proteasome regulato 98.2 4.2E-05 1.4E-09 81.1 18.0 193 608-800 15-244 (434)
174 2dba_A Smooth muscle cell asso 98.2 4.8E-05 1.7E-09 66.2 15.5 96 667-765 28-127 (148)
175 3q49_B STIP1 homology and U bo 98.2 6.8E-05 2.3E-09 64.3 16.0 98 666-765 8-105 (137)
176 2kck_A TPR repeat; tetratricop 98.2 2.4E-05 8.2E-10 64.2 12.5 99 666-767 5-107 (112)
177 4f3v_A ESX-1 secretion system 98.2 5.8E-05 2E-09 72.2 16.4 189 149-346 18-237 (282)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2E-05 7E-10 83.6 14.5 97 702-800 317-414 (457)
179 1wao_1 Serine/threonine protei 98.1 5.6E-06 1.9E-10 88.3 9.8 120 639-762 13-135 (477)
180 1dce_A Protein (RAB geranylger 98.1 0.00011 3.7E-09 79.8 20.0 162 645-811 42-230 (567)
181 4b4t_Q 26S proteasome regulato 98.1 0.00036 1.2E-08 73.8 23.6 97 634-730 137-244 (434)
182 2if4_A ATFKBP42; FKBP-like, al 98.1 6.5E-06 2.2E-10 83.5 9.2 154 632-807 179-334 (338)
183 1hxi_A PEX5, peroxisome target 98.1 2.8E-05 9.5E-10 65.0 11.4 91 672-765 22-113 (121)
184 2xev_A YBGF; tetratricopeptide 98.1 0.00011 3.7E-09 62.1 14.8 92 672-766 7-105 (129)
185 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.6E-10 69.6 10.8 133 633-765 10-157 (164)
186 1wao_1 Serine/threonine protei 98.1 2.7E-05 9.2E-10 83.0 13.1 121 603-726 12-134 (477)
187 1dce_A Protein (RAB geranylger 98.0 0.00014 4.8E-09 78.9 18.5 174 612-790 44-244 (567)
188 1ihg_A Cyclophilin 40; ppiase 98.0 5.5E-05 1.9E-09 77.5 13.3 88 702-792 273-361 (370)
189 1ihg_A Cyclophilin 40; ppiase 98.0 7.7E-05 2.6E-09 76.4 14.3 69 737-806 273-341 (370)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.3E-05 2.2E-09 79.8 13.9 102 704-808 270-387 (457)
191 3rkv_A Putative peptidylprolyl 97.9 0.00014 4.8E-09 64.5 13.3 29 633-661 12-40 (162)
192 3k9i_A BH0479 protein; putativ 97.9 2.4E-05 8.2E-10 65.0 7.4 85 680-765 3-89 (117)
193 2hr2_A Hypothetical protein; a 97.9 0.00019 6.4E-09 61.7 12.8 95 671-765 15-130 (159)
194 1klx_A Cysteine rich protein B 97.8 0.0003 1E-08 60.2 13.6 88 708-801 31-126 (138)
195 2kat_A Uncharacterized protein 97.8 8.9E-05 3.1E-09 61.2 10.0 82 721-804 4-85 (115)
196 1zu2_A Mitochondrial import re 97.8 4.3E-05 1.5E-09 65.5 8.0 97 717-817 17-134 (158)
197 2if4_A ATFKBP42; FKBP-like, al 97.8 4.5E-05 1.5E-09 77.3 9.6 121 667-807 179-299 (338)
198 2l6j_A TPR repeat-containing p 97.8 2.6E-05 9E-10 63.9 5.9 96 702-799 4-105 (111)
199 1klx_A Cysteine rich protein B 97.8 0.0012 4.2E-08 56.3 16.0 89 673-767 31-127 (138)
200 3n71_A Histone lysine methyltr 97.7 0.00031 1.1E-08 74.1 14.2 91 639-729 316-420 (490)
201 3ma5_A Tetratricopeptide repea 97.7 0.0001 3.6E-09 58.9 8.2 66 737-803 7-72 (100)
202 1zu2_A Mitochondrial import re 97.6 0.00018 6.2E-09 61.6 8.5 95 644-742 14-129 (158)
203 2l6j_A TPR repeat-containing p 97.6 0.00079 2.7E-08 54.8 11.6 69 736-805 3-71 (111)
204 3n71_A Histone lysine methyltr 97.5 0.00048 1.6E-08 72.7 12.4 61 634-694 353-420 (490)
205 1pc2_A Mitochondria fission pr 97.5 0.0008 2.7E-08 56.9 10.9 98 718-819 14-116 (152)
206 1na3_A Designed protein CTPR2; 97.5 0.00093 3.2E-08 51.9 10.8 64 740-804 12-75 (91)
207 1na3_A Designed protein CTPR2; 97.5 0.00083 2.8E-08 52.2 10.1 84 701-786 8-91 (91)
208 2kat_A Uncharacterized protein 97.4 0.00074 2.5E-08 55.5 9.1 78 651-730 4-81 (115)
209 3u64_A Protein TP_0956; tetrat 97.4 0.012 4.1E-07 55.7 17.7 85 718-804 179-272 (301)
210 3bee_A Putative YFRE protein; 97.3 0.0018 6.2E-08 50.3 9.9 81 735-818 4-87 (93)
211 2kc7_A BFR218_protein; tetratr 97.3 0.0017 5.7E-08 51.5 10.1 87 708-805 6-94 (99)
212 3ly7_A Transcriptional activat 97.2 0.0046 1.6E-07 61.2 13.2 70 734-805 274-343 (372)
213 2kc7_A BFR218_protein; tetratr 97.1 0.00077 2.6E-08 53.5 6.4 61 746-807 9-70 (99)
214 3ma5_A Tetratricopeptide repea 97.1 0.0018 6.2E-08 51.5 8.2 64 701-765 6-69 (100)
215 1nzn_A CGI-135 protein, fissio 97.0 0.011 3.7E-07 48.0 11.3 99 717-819 16-119 (126)
216 3qww_A SET and MYND domain-con 96.9 0.0051 1.7E-07 63.7 11.6 86 715-800 311-410 (433)
217 3ly7_A Transcriptional activat 96.9 0.017 5.7E-07 57.2 14.2 143 629-776 191-347 (372)
218 3qwp_A SET and MYND domain-con 96.8 0.0071 2.4E-07 62.8 11.7 90 711-800 296-399 (429)
219 2v5f_A Prolyl 4-hydroxylase su 96.7 0.014 4.6E-07 46.7 10.5 68 739-806 7-80 (104)
220 3qww_A SET and MYND domain-con 96.6 0.0084 2.9E-07 62.1 10.6 61 704-764 342-409 (433)
221 3qwp_A SET and MYND domain-con 96.4 0.024 8.1E-07 58.8 12.5 91 675-765 295-399 (429)
222 3mkq_A Coatomer beta'-subunit; 96.3 0.14 4.9E-06 58.8 20.2 97 609-726 664-760 (814)
223 3lvg_A Clathrin heavy chain 1; 96.3 2.6E-07 8.9E-12 92.1 -23.8 234 175-446 53-286 (624)
224 1pc2_A Mitochondria fission pr 96.2 0.054 1.8E-06 45.8 11.2 81 683-765 14-99 (152)
225 3o48_A Mitochondria fission 1 96.0 0.13 4.6E-06 41.7 11.9 86 732-819 35-123 (134)
226 1y8m_A FIS1; mitochondria, unk 95.9 0.29 9.8E-06 40.4 13.9 84 734-819 36-122 (144)
227 3mkq_A Coatomer beta'-subunit; 95.8 0.23 8E-06 57.0 18.5 46 398-449 663-708 (814)
228 3mkq_B Coatomer subunit alpha; 95.5 1.1 3.8E-05 38.8 16.6 99 398-517 16-114 (177)
229 3mkq_B Coatomer subunit alpha; 95.5 0.37 1.3E-05 41.9 13.5 128 642-799 15-142 (177)
230 3u64_A Protein TP_0956; tetrat 95.4 0.21 7.3E-06 47.2 12.8 92 648-741 179-281 (301)
231 4h7y_A Dual specificity protei 95.3 0.44 1.5E-05 39.6 12.8 53 751-804 74-126 (161)
232 3bee_A Putative YFRE protein; 95.3 0.24 8.1E-06 38.2 11.0 65 631-696 5-72 (93)
233 4b4t_P 26S proteasome regulato 95.3 3.2 0.00011 43.1 22.8 282 506-819 30-347 (445)
234 2v5f_A Prolyl 4-hydroxylase su 95.1 0.2 6.8E-06 39.7 10.3 63 704-766 7-75 (104)
235 1wy6_A Hypothetical protein ST 95.1 1 3.4E-05 36.6 13.5 47 644-693 19-65 (172)
236 4ady_A RPN2, 26S proteasome re 94.6 7.7 0.00026 43.7 42.9 188 431-625 383-588 (963)
237 1nzn_A CGI-135 protein, fissio 94.2 0.44 1.5E-05 38.6 10.1 85 611-696 15-103 (126)
238 4h7y_A Dual specificity protei 93.9 0.8 2.7E-05 38.1 11.1 101 631-733 12-125 (161)
239 4gns_B Protein CSD3, chitin bi 93.7 0.59 2E-05 51.5 13.2 54 744-799 344-398 (754)
240 3lvg_A Clathrin heavy chain 1; 93.3 0.00016 5.6E-09 72.5 -13.8 266 210-513 53-325 (624)
241 1v54_E Cytochrome C oxidase po 93.2 0.52 1.8E-05 35.8 8.0 65 755-820 28-92 (109)
242 1wy6_A Hypothetical protein ST 93.2 2.9 9.9E-05 34.0 16.8 62 460-522 94-155 (172)
243 2wpv_A GET4, UPF0363 protein Y 92.4 8.2 0.00028 37.3 18.9 109 183-306 40-158 (312)
244 4ady_A RPN2, 26S proteasome re 92.1 19 0.00065 40.6 48.0 255 466-730 383-657 (963)
245 4b4t_P 26S proteasome regulato 91.4 15 0.0005 38.1 20.1 93 707-799 142-245 (445)
246 1y8m_A FIS1; mitochondria, unk 91.0 5.3 0.00018 33.0 12.3 67 699-765 36-105 (144)
247 3o48_A Mitochondria fission 1 90.8 2.3 7.8E-05 34.6 9.9 71 698-770 36-109 (134)
248 2y69_E Cytochrome C oxidase su 90.8 1.2 4.2E-05 35.9 8.0 65 756-821 72-136 (152)
249 2wpv_A GET4, UPF0363 protein Y 89.8 15 0.00051 35.5 20.2 81 525-624 132-215 (312)
250 4gns_B Protein CSD3, chitin bi 89.6 1.3 4.4E-05 48.8 10.1 125 215-343 252-397 (754)
251 3lpz_A GET4 (YOR164C homolog); 89.1 17 0.00059 35.3 22.0 108 183-305 42-159 (336)
252 1qsa_A Protein (soluble lytic 88.3 31 0.0011 37.2 25.3 115 647-765 229-347 (618)
253 2ff4_A Probable regulatory pro 88.0 3.3 0.00011 42.0 11.5 70 705-775 174-248 (388)
254 3lpz_A GET4 (YOR164C homolog); 87.9 21 0.00071 34.8 22.7 81 525-624 134-214 (336)
255 3ffl_A Anaphase-promoting comp 87.6 5.4 0.00018 34.0 10.3 120 670-802 23-152 (167)
256 4fhn_B Nucleoporin NUP120; pro 86.3 9.3 0.00032 45.3 15.6 130 283-414 900-1048(1139)
257 3txn_A 26S proteasome regulato 85.9 31 0.0011 34.7 17.2 167 597-764 19-208 (394)
258 1zbp_A Hypothetical protein VP 85.7 2.6 8.7E-05 39.3 8.0 54 711-765 6-59 (273)
259 2ff4_A Probable regulatory pro 84.2 7.2 0.00025 39.5 11.6 70 671-741 175-249 (388)
260 4fhn_B Nucleoporin NUP120; pro 83.4 19 0.00063 42.7 16.3 84 704-789 901-988 (1139)
261 3esl_A Checkpoint serine/threo 81.2 17 0.00059 32.1 11.1 57 715-771 92-149 (202)
262 4b4t_R RPN7, 26S proteasome re 80.2 10 0.00035 39.1 11.1 97 669-765 133-236 (429)
263 3ffl_A Anaphase-promoting comp 80.0 12 0.00041 31.9 9.3 117 635-764 23-149 (167)
264 2y69_E Cytochrome C oxidase su 79.3 15 0.00052 29.8 8.9 62 682-744 68-129 (152)
265 1v54_E Cytochrome C oxidase po 79.1 19 0.00066 27.5 10.3 62 263-325 26-87 (109)
266 3eiq_C Programmed cell death p 77.4 42 0.0014 33.1 13.8 64 355-419 220-285 (358)
267 2qx5_A Nucleoporin NIC96; mRNA 75.9 94 0.0032 33.7 17.8 30 771-800 532-566 (661)
268 1oyz_A Hypothetical protein YI 74.9 57 0.002 30.8 19.9 169 631-818 104-278 (280)
269 1zbp_A Hypothetical protein VP 74.3 57 0.0019 30.4 14.9 116 677-805 7-133 (273)
270 4b4t_R RPN7, 26S proteasome re 73.8 35 0.0012 34.9 13.0 98 634-731 133-237 (429)
271 3esl_A Checkpoint serine/threo 70.4 34 0.0012 30.3 9.9 57 680-736 92-149 (202)
272 3txn_A 26S proteasome regulato 69.5 96 0.0033 31.1 24.9 160 637-800 104-283 (394)
273 4a1g_A Mitotic checkpoint seri 67.2 55 0.0019 27.4 10.4 52 754-805 82-134 (152)
274 3mv2_A Coatomer subunit alpha; 65.6 83 0.0028 30.2 12.2 51 754-804 187-239 (325)
275 3l6a_A Eukaryotic translation 62.3 1.2E+02 0.004 30.1 13.4 23 215-237 16-38 (364)
276 2uwj_G Type III export protein 59.8 55 0.0019 24.9 9.7 78 717-802 21-98 (115)
277 2p58_C Putative type III secre 59.7 56 0.0019 24.9 10.7 78 717-802 22-99 (116)
278 4aez_C MAD3, mitotic spindle c 55.8 64 0.0022 29.1 9.1 50 755-804 132-182 (223)
279 3eiq_C Programmed cell death p 55.8 51 0.0017 32.5 9.4 63 601-664 221-285 (358)
280 2wvi_A Mitotic checkpoint seri 55.3 98 0.0033 26.3 10.4 51 721-771 79-130 (164)
281 3ltm_A Alpha-REP4; protein eng 55.0 1.1E+02 0.0039 27.0 17.3 154 630-800 31-184 (211)
282 2zu6_B Programmed cell death p 53.8 1.1E+02 0.0039 29.3 11.3 23 357-379 171-193 (307)
283 4a1g_A Mitotic checkpoint seri 52.8 83 0.0028 26.4 8.8 50 721-770 84-134 (152)
284 3mkr_B Coatomer subunit alpha; 49.5 1E+02 0.0034 29.6 9.9 47 758-804 182-230 (320)
285 2wvi_A Mitotic checkpoint seri 49.4 1.1E+02 0.0038 26.0 9.2 54 684-737 77-131 (164)
286 1k1a_A B-cell lymphoma 3-encod 46.5 78 0.0027 28.7 9.1 83 291-377 15-101 (241)
287 2nsz_A Programmed cell death p 45.7 72 0.0025 25.9 7.4 65 213-278 9-74 (129)
288 1wdy_A 2-5A-dependent ribonucl 43.9 51 0.0017 30.9 7.5 20 400-419 192-211 (285)
289 2zu6_B Programmed cell death p 40.8 39 0.0013 32.5 5.8 65 320-385 169-235 (307)
290 2nsz_A Programmed cell death p 40.8 1.2E+02 0.004 24.6 7.9 23 357-379 12-34 (129)
291 2d2s_A Exocyst complex compone 40.2 1.1E+02 0.0037 28.0 8.4 91 672-765 23-119 (235)
292 2ion_A PDCD4, programmed cell 38.7 1E+02 0.0035 25.9 7.4 65 213-278 11-76 (152)
293 2d2s_A Exocyst complex compone 38.6 1.8E+02 0.0061 26.6 9.6 22 289-310 25-46 (235)
294 3ubw_A 14-3-3E, 14-3-3 protein 38.3 2.4E+02 0.0083 26.0 11.0 54 606-659 40-94 (261)
295 3pvs_A Replication-associated 37.6 3.5E+02 0.012 27.6 14.2 138 612-768 166-326 (447)
296 4b4t_S RPN3, 26S proteasome re 37.4 2.5E+02 0.0086 29.2 11.4 63 633-695 232-298 (523)
297 1k1a_A B-cell lymphoma 3-encod 37.1 1.1E+02 0.0037 27.7 8.4 26 218-243 13-38 (241)
298 1wdy_A 2-5A-dependent ribonucl 35.8 1.1E+02 0.0038 28.4 8.6 11 292-302 12-22 (285)
299 3l6a_A Eukaryotic translation 34.8 3.4E+02 0.012 26.7 12.0 25 320-344 15-39 (364)
300 2ion_A PDCD4, programmed cell 32.7 1.1E+02 0.0039 25.6 6.7 24 356-379 13-36 (152)
301 3hra_A Ankyrin repeat family p 32.5 1.3E+02 0.0043 26.2 7.8 15 187-201 13-27 (201)
302 3t8k_A Uncharacterized protein 31.7 1.3E+02 0.0043 26.2 7.4 30 217-246 41-70 (186)
303 2cos_A Serine/threonine protei 31.7 48 0.0016 21.7 3.1 38 757-799 10-49 (54)
304 3t8k_A Uncharacterized protein 31.2 1.5E+02 0.0052 25.6 7.9 14 407-420 94-107 (186)
305 4aez_C MAD3, mitotic spindle c 31.1 74 0.0025 28.7 5.5 51 720-770 132-183 (223)
306 2r9g_A AAA ATPase, central reg 30.7 2.8E+02 0.0095 24.4 10.1 37 715-752 27-63 (204)
307 3ubw_A 14-3-3E, 14-3-3 protein 30.5 2.2E+02 0.0074 26.4 8.5 28 744-771 38-65 (261)
308 3eu9_A Huntingtin-interacting 30.5 66 0.0023 29.1 5.7 45 292-340 16-62 (240)
309 3hra_A Ankyrin repeat family p 30.1 1E+02 0.0035 26.9 6.7 14 293-306 13-26 (201)
310 3bu8_A Telomeric repeat-bindin 29.5 2.1E+02 0.0072 25.4 7.8 48 718-765 88-142 (235)
311 4b4t_S RPN3, 26S proteasome re 29.5 1.4E+02 0.0047 31.1 7.9 66 739-804 233-302 (523)
312 3jxi_A Vanilloid receptor-rela 29.2 20 0.00067 33.6 1.6 25 292-316 12-36 (260)
313 4gq2_M Nucleoporin NUP120; bet 28.7 3.6E+02 0.012 31.0 12.2 123 673-813 816-938 (950)
314 2uwj_G Type III export protein 28.4 2E+02 0.0068 22.0 11.2 84 151-249 20-105 (115)
315 2p58_C Putative type III secre 27.9 2E+02 0.007 22.0 12.0 84 151-249 21-106 (116)
316 3bge_A Predicted ATPase; struc 27.4 3.2E+02 0.011 24.0 8.8 21 681-701 21-41 (201)
317 1ug3_A EIF4GI, eukaryotic prot 27.3 1.4E+02 0.0048 29.2 7.5 24 215-238 15-38 (339)
318 3f3f_C Nucleoporin NUP85; stru 27.2 5.7E+02 0.019 26.9 20.4 86 634-721 481-568 (570)
319 4g8k_A 2-5A-dependent ribonucl 27.1 2.5E+02 0.0085 27.0 9.5 289 180-491 26-328 (337)
320 1qsa_A Protein (soluble lytic 25.7 6.4E+02 0.022 27.0 35.8 264 356-660 76-347 (618)
321 3kea_A K1L; tropism, ANK repea 24.9 2.2E+02 0.0076 26.7 8.4 18 395-412 166-183 (285)
322 2npu_A FKBP12-rapamycin comple 24.3 2E+02 0.007 23.1 6.3 73 746-822 49-125 (126)
323 3iqu_A 14-3-3 protein sigma; s 24.1 4.1E+02 0.014 24.2 9.2 163 603-765 14-204 (236)
324 1wty_A Hypothetical protein TT 23.5 2E+02 0.0068 22.7 6.4 67 683-755 4-71 (119)
325 3ltm_A Alpha-REP4; protein eng 23.3 3.7E+02 0.013 23.4 17.3 14 529-542 159-172 (211)
326 2ijq_A Hypothetical protein; s 23.0 3.4E+02 0.012 22.9 8.7 51 715-765 45-103 (161)
327 4gq2_M Nucleoporin NUP120; bet 22.9 4.5E+02 0.015 30.1 11.7 131 638-786 816-950 (950)
328 1ya0_A SMG-7 transcript varian 22.9 5.2E+02 0.018 26.8 11.0 77 705-784 155-232 (497)
329 2xig_A Ferric uptake regulatio 22.7 2.8E+02 0.0096 23.0 7.5 59 377-436 17-75 (150)
330 3pvs_A Replication-associated 22.7 6.2E+02 0.021 25.7 13.9 38 434-471 267-304 (447)
331 3kea_A K1L; tropism, ANK repea 22.7 1.9E+02 0.0064 27.2 7.4 18 464-481 165-182 (285)
332 2npm_A 14-3-3 domain containin 22.7 3.3E+02 0.011 25.2 8.3 24 709-732 35-58 (260)
333 3bqo_A Telomeric repeat-bindin 22.6 92 0.0031 27.2 4.3 48 192-239 94-145 (211)
334 2b7e_A PRE-mRNA processing pro 22.5 92 0.0032 21.0 3.4 29 299-327 3-31 (59)
335 1ug3_A EIF4GI, eukaryotic prot 22.2 3.5E+02 0.012 26.3 9.3 23 181-203 16-38 (339)
336 3re2_A Predicted protein; meni 22.2 4.9E+02 0.017 25.4 9.4 91 708-815 241-344 (472)
337 2br9_A 14-3-3E, 14-3-3 protein 22.2 1.9E+02 0.0067 26.3 6.7 40 708-747 11-50 (234)
338 3uzd_A 14-3-3 protein gamma; s 22.0 2.4E+02 0.0081 25.9 7.2 28 744-771 11-38 (248)
339 3u84_A Menin; MLL, JUND, ledgf 21.9 4.7E+02 0.016 26.1 9.3 91 708-815 263-366 (550)
340 3ctd_A Putative ATPase, AAA fa 21.6 4.3E+02 0.015 23.5 9.5 45 672-716 37-84 (213)
341 4b4t_O 26S proteasome regulato 21.3 4.4E+02 0.015 26.3 10.0 20 675-694 84-103 (393)
342 2rfa_A Transient receptor pote 20.8 3.5E+02 0.012 24.0 8.7 23 431-453 160-182 (232)
343 1o9d_A 14-3-3-like protein C; 20.5 3E+02 0.01 25.5 7.6 40 708-747 14-55 (260)
344 4fke_A Aminopeptidase N; zinc 20.4 9.7E+02 0.033 27.2 19.3 25 426-450 762-786 (909)
345 2crb_A Nuclear receptor bindin 20.2 1.5E+02 0.0051 22.1 4.3 19 775-793 18-36 (97)
346 2jul_A Calsenilin; EF-hand, ca 20.2 5E+02 0.017 23.7 11.6 25 353-377 230-254 (256)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-39 Score=362.45 Aligned_cols=513 Identities=10% Similarity=-0.050 Sum_probs=319.4
Q ss_pred HhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003393 186 LGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDR 265 (823)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 265 (823)
+.+.|.+..+...+..++. +++..|+.++..|.+.|++++|+.+|++|.+. .|+..++..+...|.+.|+ +++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~-~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGD-YAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTC-HHH
T ss_pred ccccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCc-HHH
Confidence 4556666666666665543 37788899999999999999999999988753 5677777778888888776 678
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003393 266 ILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMED 345 (823)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 345 (823)
|..+|+++... .++..+++.++.+|.+.|++++|.++|+++... .. ....+.+.+. ..
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~~~~~~-----------~~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF-----RK----DEKNANKLLM-----------QD 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT-----C--------------C-----------CC
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc-----cc----cccccccccc-----------cc
Confidence 88888776533 556777777777777777777777777742211 10 0000100000 11
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCH
Q 003393 346 NNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKAL--RL-LNKMKESGCAPNV 422 (823)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~ 422 (823)
.+.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+...+...++.+.+. .+ +..+...+.....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 233445566666666666666666666666666655322 3444444443333222211111 11 3333333333333
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003393 423 CTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAY 502 (823)
Q Consensus 423 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 502 (823)
.+|+.++..|.+.|++++|.++|+++.+. .++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 44444555555555666666666555543 2455555555555555555555555555554433 22344455555555
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 003393 503 GRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIR 582 (823)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 582 (823)
.+.|+.++|.++++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------- 401 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST--------------------------- 401 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH---------------------------
Confidence 55555555555555554322 22444555555555555555555555544433
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003393 583 KIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESG 662 (823)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 662 (823)
.. ..+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 402 -------------------------------------------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 402 -------------------------------------------MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp -------------------------------------------HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred -------------------------------------------hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 21 1256677788888888888888888888888765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--
Q 003393 663 MQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPC-- 736 (823)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-- 736 (823)
. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 438 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 Q-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 3 377888888888888888888888888888763 336788888888899999999999998888875 56777
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 737 IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 737 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
..+|..++.+|.+.|++++|++.++++.+.+.. +..+|..++.+|.+.|++++|.++++++.+.+|++.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 678888999999999999999999998876432 688888999999999999999999999999888863
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.3e-39 Score=360.17 Aligned_cols=523 Identities=11% Similarity=-0.005 Sum_probs=376.9
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 003393 147 LDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGK 226 (823)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 226 (823)
....|....+...|..+.. .+...|..+++.+.+.|+++.|..+|+.+... .|+..++..++.+|.+.|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSL--------SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTC
T ss_pred ccccCccCCCCCccccchH--------HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCc
Confidence 4444555555555443311 46788999999999999999999999998753 4577899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003393 227 YEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFA 306 (823)
Q Consensus 227 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 306 (823)
+++|+.+|+++... .++..+++.++.+|.+.|+ +++|.++|+++.... .. ..++.+.++
T Consensus 133 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~----~~-----~~~~~~~~~--------- 191 (597)
T 2xpi_A 133 YARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYD-WQGALNLLGETNPFR----KD-----EKNANKLLM--------- 191 (597)
T ss_dssp HHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTC-HHHHHHHHCSSCTTC-------------------C---------
T ss_pred HHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhh-HHHHHHHHhccCCcc----cc-----ccccccccc---------
Confidence 99999999998653 6789999999999999998 899999998532211 00 011111111
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH--HH-HHHHHhCCC
Q 003393 307 GLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGA--AL-IDTMSSKGL 383 (823)
Q Consensus 307 ~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~--~~-~~~~~~~~~ 383 (823)
...|...+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+.
T Consensus 192 --~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 268 (597)
T 2xpi_A 192 --QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268 (597)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGH
T ss_pred --cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchH
Confidence 122445567788888888888888888888888887754 224455555554443332222211 11 455555555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHH
Q 003393 384 MPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTM 463 (823)
Q Consensus 384 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 463 (823)
..+..+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..+
T Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 345 (597)
T 2xpi_A 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLH 345 (597)
T ss_dssp HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHH
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHH
Confidence 556667888888999999999999999998775 47899999999999999999999999999987643 377889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003393 464 LTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDW 543 (823)
Q Consensus 464 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 543 (823)
+.++.+.|+.++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998653 5578899999999999999999999999998753 33688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 003393 544 KAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQEL 623 (823)
Q Consensus 544 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 623 (823)
++|.++|+++.+.+.
T Consensus 424 ~~A~~~~~~~~~~~~----------------------------------------------------------------- 438 (597)
T 2xpi_A 424 DQAISAYTTAARLFQ----------------------------------------------------------------- 438 (597)
T ss_dssp HHHHHHHHHHHHTTT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCc-----------------------------------------------------------------
Confidence 999999998876521
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCC
Q 003393 624 QKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKS----GGT 699 (823)
Q Consensus 624 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 699 (823)
.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+. +..
T Consensus 439 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 439 ------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp ------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred ------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 13345556666666667777777777776665432 5666777777777777777777777777654 445
Q ss_pred CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003393 700 PD--LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKI 777 (823)
Q Consensus 700 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 777 (823)
|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|...|++++|.+.++++++..+. +...+..
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~ 589 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN-EIMASDL 589 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-ChHHHHH
Confidence 55 5677777777777777777777777777643 235677777777777777777777777777774332 4556666
Q ss_pred HHHHH
Q 003393 778 VVDGY 782 (823)
Q Consensus 778 l~~~~ 782 (823)
+..+|
T Consensus 590 l~~~~ 594 (597)
T 2xpi_A 590 LKRAL 594 (597)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 65554
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.4e-29 Score=266.06 Aligned_cols=204 Identities=18% Similarity=0.244 Sum_probs=128.4
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC---------HHH
Q 003393 266 ILGLLDEMRSRGLEFDE-FTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGV---------YSE 335 (823)
Q Consensus 266 a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~---------~~~ 335 (823)
+..+.+++.+.+..... ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444445544443332 23555566666666666666666666666666666666666666654433 566
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 336 ALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKE 415 (823)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 415 (823)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 003393 416 SGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGN 469 (823)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 469 (823)
.|+.||..+|+.||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777666654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.2e-29 Score=265.64 Aligned_cols=213 Identities=15% Similarity=0.208 Sum_probs=115.1
Q ss_pred HHHHHhhcccCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003393 195 ASKLLDLIPLEKYSLDV-RAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEM 273 (823)
Q Consensus 195 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 273 (823)
+..+...+.+.+....+ .+++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+.. .+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~-~~-------- 79 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAA-TE-------- 79 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCC-SS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCch-hh--------
Confidence 34455555555444333 457778888888888888888888888888888888888888888776542 00
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 003393 274 RSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSV 353 (823)
Q Consensus 274 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 353 (823)
..+.+++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 80 ------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 80 ------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp ------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred ------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 01122344455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003393 354 TYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLG 433 (823)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 433 (823)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred c
Q 003393 434 K 434 (823)
Q Consensus 434 ~ 434 (823)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 3
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.5e-24 Score=229.19 Aligned_cols=359 Identities=12% Similarity=0.040 Sum_probs=165.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003393 361 AYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEE 440 (823)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 440 (823)
.+.+.|++++|.+.++++.+.... +...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344445555555555444443211 33344444444445555555555555444432 2244455555555555555555
Q ss_pred HHHHHHHhhhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003393 441 MMKILCDMKSSGCSP-NRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMM 519 (823)
Q Consensus 441 a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 519 (823)
|+..|+++.+. .| +..+|..+..++...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555443 12 23345555555555555555555555554432 2223444555555666666666666666665
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHH
Q 003393 520 KTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWML 599 (823)
Q Consensus 520 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 599 (823)
+.. +.+..+|..+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~------------------- 221 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDR------------------- 221 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTH-------------------
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHH-------------------
Confidence 542 22455666666666666666666666666655321 112222222222222222222
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003393 600 LRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR 679 (823)
Q Consensus 600 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 679 (823)
|...|++..+..+ .+..++..+...|...|++++|++.|+++++.... +..+|..++.+|.+
T Consensus 222 ----------------A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 222 ----------------AVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKE 283 (388)
T ss_dssp ----------------HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 2222222222211 12334444444444555555555555554443321 33444444444445
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 003393 680 AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEV 759 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 759 (823)
.|++++|...|+++.+.. +.+..+++.++..+.+.|++++|.+.++++.+. .+.+..++..++.++.+.|++++|++.
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555444431 223444444444444444455554444444442 111233444444444444444444444
Q ss_pred HHHHHh
Q 003393 760 IKHMFQ 765 (823)
Q Consensus 760 ~~~~~~ 765 (823)
++++++
T Consensus 362 ~~~a~~ 367 (388)
T 1w3b_A 362 YKEAIR 367 (388)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444444
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.3e-24 Score=227.74 Aligned_cols=376 Identities=12% Similarity=0.050 Sum_probs=302.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCC
Q 003393 393 LIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGL 472 (823)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 472 (823)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456678899999999998887763 2355677777788888999999999988887652 3367788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003393 473 DKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILD 552 (823)
Q Consensus 473 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 552 (823)
+++|...|+++.+.. +.+...|..+...+.+.|++++|.+.|+++.+... .+...+..+...+...|++++|..+|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999998887753 34566788888888899999999999988887542 2456677777888888999999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCH
Q 003393 553 MQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDL 632 (823)
Q Consensus 553 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 632 (823)
+.+.. +.+..++..+...+...|++ ++|...|+++.+.++. +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~-----------------------------------~~A~~~~~~al~~~p~-~~ 203 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEI-----------------------------------WLAIHHFEKAVTLDPN-FL 203 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCH-----------------------------------HHHHHHHHHHHHHCTT-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCH-----------------------------------HHHHHHHHHHHhcCCC-cH
Confidence 87653 22455566665555555554 5555556666655432 56
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003393 633 VIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGF 712 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 712 (823)
..+..+...+...|++++|...++++++.... +..++..++.+|.+.|++++|+..|+++.+.. +.+..+|..++.++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 78889999999999999999999999987543 67889999999999999999999999999863 33578899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003393 713 CRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
.+.|++++|.+.|+++.+. .+.+..++..++.++...|++++|++.++++++..+ .+..++..++.+|.+.|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999985 345678899999999999999999999999998532 25788999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHH
Q 003393 793 DFLSKIKERDDSFNDESVKRLT 814 (823)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~l~ 814 (823)
+.++++.+..|++.. .+..+.
T Consensus 360 ~~~~~a~~~~p~~~~-a~~~lg 380 (388)
T 1w3b_A 360 MHYKEAIRISPTFAD-AYSNMG 380 (388)
T ss_dssp HHHHHHHTTCTTCHH-HHHHHH
T ss_pred HHHHHHHhhCCCCHH-HHHhHH
Confidence 999999999998744 343333
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.6e-23 Score=229.05 Aligned_cols=274 Identities=11% Similarity=-0.044 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003393 492 RDTFNTLISAYGR---CGSGVDATKMFEDMMK-----TGF--------TPCVTTYNAFLNALARRGDWKAAESVILDMQN 555 (823)
Q Consensus 492 ~~~~~~li~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 555 (823)
...+..+...+.. .|++++|..+|+++.+ ... +.+..++..+...+...|++++|..+++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444443 7888888888888776 211 12345677777888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 003393 556 KGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIF 635 (823)
Q Consensus 556 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 635 (823)
.... ...+..+..++...|++++|...++.+ .+... .+..++
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~-----------------------------------~~~~~-~~~~~~ 307 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKA-----------------------------------LKLDS-NNSSVY 307 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHH-----------------------------------HTTCT-TCTHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------------------------hhcCc-CCHHHH
Confidence 5433 666666777777777766665554444 33221 244566
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003393 636 NSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQ 715 (823)
Q Consensus 636 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 715 (823)
..+...|...|++++|...++.+.+.... +...+..+...|...|++++|...++++.+.. +.+..++..++..+...
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHC
Confidence 66666677777777777777777665433 45566666777777777777777777776542 22455666677777777
Q ss_pred CCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003393 716 GLMQEAMRMLYEMTNRGI-RPC----IFTYNTFVSGYAG---QGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 716 g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
|++++|...++++.+... .++ ...+..++.++.. .|++++|++.++++++.... +...+..++.+|.+.|+
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcC
Confidence 777777777777665211 111 2366667777777 77777777777777664322 45666777777777777
Q ss_pred hHHHHHHHHHHhhcCCCCC
Q 003393 788 YKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 788 ~~~A~~~~~~~~~~~~~~~ 806 (823)
+++|.++++++.+..|++.
T Consensus 465 ~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 465 IDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHHhccccH
Confidence 7777777777777777653
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-21 Score=214.73 Aligned_cols=439 Identities=9% Similarity=-0.024 Sum_probs=275.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003393 284 TCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYV 363 (823)
Q Consensus 284 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (823)
.+......+.+.|++++|.+.|+++.+.. |+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44455556666677777777777666653 566666666777777777777777777666553 334556666667777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHcCCCHHH
Q 003393 364 RAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVL---GMLGKKGRSEE 440 (823)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~ 440 (823)
+.|++++|...|+++.+.+.. +......++..+........+.+.+..+...+..++...+.... ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777766665432 32333333333333333333333332222211111111111000 00001111111
Q ss_pred HHHHHHHhhhCC------CCCChhHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHH
Q 003393 441 MMKILCDMKSSG------CSPNRITWNTMLTMCGN---KGLDKYVNQVFREMKS-----CGF--------EPDRDTFNTL 498 (823)
Q Consensus 441 a~~~~~~~~~~~------~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 498 (823)
+...+....... ...+...+......+.. .|+++.|..+++++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 111111111000 01113333333333443 7888888888888876 311 1234567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 003393 499 ISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNL 578 (823)
Q Consensus 499 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 578 (823)
...+...|++++|...++.+.+... +...+..+...+...|++++|...++++..... .+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 8888999999999999999887643 378888888999999999999999999887532 2445555555555555555
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003393 579 KGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLI 658 (823)
Q Consensus 579 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 658 (823)
++| ...|+++.+.... +..++..+...|...|++++|...++.+
T Consensus 321 ~~A-----------------------------------~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 321 DQA-----------------------------------GKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp THH-----------------------------------HHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHH-----------------------------------HHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544 4445555554322 5567888888888999999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 003393 659 LESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD----LVSYNTVIKGFCR---QGLMQEAMRMLYEMTN 730 (823)
Q Consensus 659 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 730 (823)
.+.... +...+..+...|.+.|++++|...++++.+.... ++ ..++..++.++.. .|++++|...|+++.+
T Consensus 365 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 876533 6678888899999999999999999988764211 11 3378888999999 9999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 003393 731 RGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 731 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
.. +.+..++..+..+|...|++++|.+.++++++..
T Consensus 444 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 444 LD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 52 2356778889999999999999999999999854
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.5e-21 Score=214.54 Aligned_cols=447 Identities=11% Similarity=0.026 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003393 283 FTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAY 362 (823)
Q Consensus 283 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (823)
..+..+...+.+.|++++|.+.|+++.+.. +.+...|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345555556666666666666666665542 2244555556666666666666666666655543 23445555555566
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHHH
Q 003393 363 VRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGC--APNVCTYNAVLGMLGKKGRSEE 440 (823)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 440 (823)
...|++++|...|+.+ ... |+ .....+..+...+....|...++++..... ..........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 6666666666655422 211 11 111122233333444455555555533210 0000011122222333333333
Q ss_pred HHHHHHHhhhCCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003393 441 MMKILCDMKSSGCSPNRI-TWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMM 519 (823)
Q Consensus 441 a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 519 (823)
+...+...... .+... ....+...+...+ .......|++++|..+++.+.
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHHH
Confidence 33322222111 11111 1111111111100 000111235666666666666
Q ss_pred hCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 003393 520 KTGFTPC-------VTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGR 592 (823)
Q Consensus 520 ~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 592 (823)
+.... + ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...
T Consensus 230 ~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~-------- 298 (537)
T 3fp2_A 230 SANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKF-------- 298 (537)
T ss_dssp C--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHH--------
T ss_pred HHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHH--------
Confidence 54221 2 2234555566666777777777777766642 3344555555555555554444444
Q ss_pred CCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003393 593 IFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNN 672 (823)
Q Consensus 593 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 672 (823)
|+++.+... .+..++..+...|...|++++|.+.++++++.... +...+..
T Consensus 299 ---------------------------~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 349 (537)
T 3fp2_A 299 ---------------------------FQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQ 349 (537)
T ss_dssp ---------------------------HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHH
T ss_pred ---------------------------HHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 333333321 14455666666666666666666666666654422 4455666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHH
Q 003393 673 LMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG-----IRPCIFTYNTFVSGY 747 (823)
Q Consensus 673 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~ 747 (823)
+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. ..-....+..+..++
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666542 2244556666666666666666666666665421 001112233344455
Q ss_pred HcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 748 AGQ----------GMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 748 ~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
... |++++|+..++++++.... +...+..++.+|.+.|++++|.++++++.+..|+..+
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 555 6666666666666654322 4555666666666666666666666666666666543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.5e-20 Score=203.06 Aligned_cols=352 Identities=13% Similarity=0.082 Sum_probs=195.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003393 351 DSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLG 430 (823)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 430 (823)
+...+..+...+.+.|++++|..+|+++.+... .+..+|..+..+|...|++++|+..|+++.+.+. .+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 445555566666666666666666666655422 2455566666666666666666666666655432 24455555566
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003393 431 MLGKKGRSEEMMKILCDMKSSGCSPNR----ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCG 506 (823)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 506 (823)
+|.+.|++++|.+.|+++.+. .|+. ..+..+...+.. ..+..+...+.+.|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 666666666666666665543 2221 223322222110 01122233444555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 003393 507 SGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEK 586 (823)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 586 (823)
++++|...|+.+.+.. +.+..++..+...|.+.|++++|..+++++.+..
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------------- 207 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK----------------------------- 207 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----------------------------
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------
Confidence 5555555555555432 1244445555555555555555555554444321
Q ss_pred HHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003393 587 EIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPN 666 (823)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 666 (823)
..+..++..+...|...|++++|+..|+++++.... +
T Consensus 208 ------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 244 (450)
T 2y4t_A 208 ------------------------------------------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-H 244 (450)
T ss_dssp ------------------------------------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-h
Confidence 113344445555555555555555555555543221 2
Q ss_pred HHHHHH------------HHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003393 667 LVTYNN------------LMDMYARAGKCWKAEEILKGILKSGGTPD-----LVSYNTVIKGFCRQGLMQEAMRMLYEMT 729 (823)
Q Consensus 667 ~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 729 (823)
...+.. ++..|.+.|++++|...|+++.+. .|+ ...|..++.++.+.|++++|+..++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222222 266777777777777777777764 233 3356677777777778888887777777
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH------------HHHhcC-----ChHHHH
Q 003393 730 NRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD------------GYCKAR-----KYKEAM 792 (823)
Q Consensus 730 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~------------~~~~~g-----~~~~A~ 792 (823)
+.. +.+..+|..++.+|...|++++|++.++++++..+. +...+..+.. .|...| +.+++.
T Consensus 323 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 323 QME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 631 224667777777777778888888888777763222 4555555552 344444 667778
Q ss_pred HHHHH-HhhcCCCCC
Q 003393 793 DFLSK-IKERDDSFN 806 (823)
Q Consensus 793 ~~~~~-~~~~~~~~~ 806 (823)
+.+++ +.+..|++.
T Consensus 401 ~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 401 KAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHhCCCCC
Confidence 88876 667777654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.2e-19 Score=195.98 Aligned_cols=319 Identities=12% Similarity=0.071 Sum_probs=244.9
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 456 NRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLN 535 (823)
Q Consensus 456 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 535 (823)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.+. .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 44556666666666666666666666666542 34566677777777777777777777777776542 25667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhh
Q 003393 536 ALARRGDWKAAESVILDMQNKGFKPSE----TSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCR 611 (823)
Q Consensus 536 ~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 611 (823)
.|.+.|++++|...|+++.+.. |+. ..+..+...+... ....++..+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 7888888888888888777643 332 3444444332211 1223445667788
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003393 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILK 691 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 691 (823)
++++|...|+++.+... .+..++..+..+|.+.|++++|+++|+++.+... .+..++..++.+|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887643 3778999999999999999999999999998653 378899999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChh
Q 003393 692 GILKSGGTPDLVSYNTV------------IKGFCRQGLMQEAMRMLYEMTNRGIRPC-----IFTYNTFVSGYAGQGMFT 754 (823)
Q Consensus 692 ~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~ 754 (823)
++.+.. +.+...+..+ +..|.+.|++++|+..|+++.+. .|+ ...|..++.++.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 998753 2244555554 88999999999999999999984 455 347888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 755 EIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 755 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
+|+..++++++.... +...|..++.+|...|++++|.+.++++.+..|++..
T Consensus 313 ~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHH
Confidence 999999999985322 6889999999999999999999999999999998743
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=1.8e-19 Score=199.60 Aligned_cols=432 Identities=9% Similarity=-0.006 Sum_probs=262.2
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 003393 245 TLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLL 324 (823)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 324 (823)
....|..+...+.+.|+ +++|...|+++.+.. +.+..++..+..+|...|++++|++.|+++.+.. +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 35667888888888888 799999999999875 4578899999999999999999999999998874 33577899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHH
Q 003393 325 QVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSK------GLMPNAVTYTTLIDAYG 398 (823)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~li~~~~ 398 (823)
.++...|++++|+..|+.+ .. .|+ .....+..+...+...+|...++++... ...|+.. .+..+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 171 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF 171 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence 9999999999999999744 22 222 2233355666777778999999998664 2334443 344455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcC--------CCHHHHHHHHHHhhhCCCCCChh-------HHHH
Q 003393 399 RAGKVNKALRLLNKMKESGCAPNV-CTYNAVLGMLGKK--------GRSEEMMKILCDMKSSGCSPNRI-------TWNT 462 (823)
Q Consensus 399 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~~-------~~~~ 462 (823)
...+.+.+...+...... .+.. .....+...+... |++++|..+++.+.+.... +.. ++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCY 248 (537)
T ss_dssp HTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHH
Confidence 667777666555444332 2222 2333444444333 2566777777777654211 111 2333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003393 463 MLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGD 542 (823)
Q Consensus 463 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 542 (823)
+...+...|++++|...++.+.+. .|+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 333444444555555555544443 2234444444444444444444444444444332 1133444444444444444
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 003393 543 WKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQE 622 (823)
Q Consensus 543 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 622 (823)
+++|...++++.+
T Consensus 326 ~~~A~~~~~~a~~------------------------------------------------------------------- 338 (537)
T 3fp2_A 326 YKNAKEDFQKAQS------------------------------------------------------------------- 338 (537)
T ss_dssp HHHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 4444444444333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC----
Q 003393 623 LQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGG---- 698 (823)
Q Consensus 623 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---- 698 (823)
.... +..++..+...|...|++++|.++++++++.... +...+..+...|...|++++|...|+++.+...
T Consensus 339 ---~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 339 ---LNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp ---HCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred ---hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 2111 3345666666777777777777777777765432 556677777777777777777777777764321
Q ss_pred -CCChhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 003393 699 -TPDLVSYNTVIKGFCRQ----------GLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 699 -~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
......+..+..++... |++++|...|+++.+.. +.+...+..+..+|...|++++|++.++++++..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 11122234445566666 78888888888877742 2245667777888888888888888888887743
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.4e-15 Score=171.25 Aligned_cols=571 Identities=11% Similarity=0.112 Sum_probs=379.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHH
Q 003393 136 LGIDLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYT 215 (823)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 215 (823)
.++.+...++++...|.+.+|+.+++.+...+. .+.-+....+.+++...+. +......+....... + ..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s--~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNS--VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCC--cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 345667788999999999999999999985432 1223566777777777666 455555555554421 2 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 003393 216 SILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGRE 295 (823)
Q Consensus 216 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 295 (823)
.+...+...|.+++|..+|++.. -.....+.++... ++ +++|.++.++. -+..+|..+.+++.+.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i---~n-ldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHI---GN-LDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHH---hh-HHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 47788889999999999999863 2344445555533 33 89999988865 2577899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 003393 296 GLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALI 375 (823)
Q Consensus 296 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (823)
|++++|.+.|.+. .+...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999663 367788889999999999999999999877654 34344446899999999998644442
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC
Q 003393 376 DTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSP 455 (823)
Q Consensus 376 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 455 (823)
+ .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|++.+++..
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------
Confidence 2 246677778999999999999999999985 379999999999999999999999873
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 456 NRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLN 535 (823)
Q Consensus 456 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 535 (823)
+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+... .-....|+-+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 678999999999999999998886654 24466778899999999999999999998887543 334556766666
Q ss_pred HHHHc--CCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhC-----------CCCChHH
Q 003393 536 ALARR--GDWKAAESVILDMQNKG----FKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAG-----------RIFPSWM 598 (823)
Q Consensus 536 ~~~~~--g~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~ 598 (823)
.|++. ++..++.++|..-.+.. ..-+...|..++-.|.+.|+++.|......-... .-..+..
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~e 1402 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVE 1402 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHH
Confidence 66654 45556666665432210 0124567888888999999999877432221100 0111223
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003393 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYA 678 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 678 (823)
++...+..|. +....+..-+.......+. +...+..+.+.+++..+..+++.+...+ +...=..+.+.|.
T Consensus 1403 lyykai~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~n---~~~Vneal~el~i 1472 (1630)
T 1xi4_A 1403 LYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFI 1472 (1630)
T ss_pred HHHHHHHHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHhc---chhhhHHHHHHhc
Confidence 3333333333 1111222112211111111 1223344455555555555555544322 2333334444454
Q ss_pred HcCCHhHHH------------HHHHHHHHcCCCCChhHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 679 RAGKCWKAE------------EILKGILKSGGTPDLVSYNTVI-KGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 679 ~~g~~~~A~------------~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
...+++.-+ .+-+++.+ .+..-+..+. ..|.++|+|..|.+++++.. -|.-.+.
T Consensus 1473 eeed~~~Lr~si~~~~nfd~~~La~~lek----heLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~ 1539 (1630)
T 1xi4_A 1473 TEEDYQALRTSIDAYDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQ 1539 (1630)
T ss_pred CccchHHHHHHHhhccCcCHHHHHHHhhh----hhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHH
Confidence 444433211 12222221 1222233333 34455689999998887642 2444566
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003393 746 GYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 793 (823)
+..++|+.+.+.+++.-..+.| +...|...+-.|..-=+.+-+++
T Consensus 1540 ~a~~S~d~e~~e~ll~~F~~~~---~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1540 YASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhccCCchHHHH
Confidence 7788899999988888888643 55566666666666666666654
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=5.8e-17 Score=176.19 Aligned_cols=162 Identities=13% Similarity=0.020 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHcCCCCChh
Q 003393 632 LVIFNSMLSICAKN-----SMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG---KCWKAEEILKGILKSGGTPDLV 703 (823)
Q Consensus 632 ~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 703 (823)
...+..+...|... +++++|...|++..+.+ +...+..|...|...| +.++|++.|++..+.+ +..
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~ 364 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKA 364 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHH
Confidence 33444455555544 67777777777777654 4456666777776655 6777777777777653 566
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCC-C-CHH
Q 003393 704 SYNTVIKGFCR----QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAG----QGMFTEIDEVIKHMFQHNCK-P-NEL 773 (823)
Q Consensus 704 ~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~ 773 (823)
.+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|+++.+.+.. | +..
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~ 441 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTEN 441 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHH
Confidence 77777777777 677888888888777754 45666777777776 67788888888888776543 2 333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 774 TYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 774 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
....|...+.. +.++|.+..++..+..++
T Consensus 442 a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 442 RNITEKKLTAK--QLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHHHHTTSCHH--HHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhcCHh--HHHHHHHHHHHHHHHHHH
Confidence 34444433332 334444444444444443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.1e-17 Score=174.39 Aligned_cols=319 Identities=11% Similarity=0.061 Sum_probs=254.0
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 456 NRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLN 535 (823)
Q Consensus 456 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 535 (823)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35567777788889999999999999888764 4567888888889999999999999999888754 236788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhh
Q 003393 536 ALARRGDWKAAESVILDMQNKGFKP----SETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCR 611 (823)
Q Consensus 536 ~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 611 (823)
.+...|++++|...++++.+.. | +...+..+...+. .......+..+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 9999999999999999888753 3 2222222221110 012233456778889
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003393 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILK 691 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 691 (823)
++++|...++++.+... .+..++..+...|...|++++|...++.+++... .+...+..+...|...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999888754 3678899999999999999999999999998754 378899999999999999999999999
Q ss_pred HHHHcCCCCChhHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcCCChh
Q 003393 692 GILKSGGTPDLVSYN------------TVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI-----FTYNTFVSGYAGQGMFT 754 (823)
Q Consensus 692 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~ 754 (823)
++.+.. +.+...+. .++..+.+.|++++|...++++.+. .|+. ..+..+..++...|+++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 998763 22334333 2366789999999999999999984 3442 23556788999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 755 EIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 755 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
+|++.++++++.... +...|..++.+|.+.|++++|.+.++++.+.+|++..
T Consensus 290 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 290 EAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 999999999985432 6889999999999999999999999999999998644
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=9.3e-15 Score=164.82 Aligned_cols=441 Identities=14% Similarity=0.196 Sum_probs=317.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHhhcccCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 003393 174 LDKEVIQLMVRILGKESRHSIASKLLDLIPLEK--YSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMG--LSPTLVTY 249 (823)
Q Consensus 174 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~ 249 (823)
.|+.+|..++. ....+ =+.+.++..... -..++.--...+.+|...|.+.+|++++++..-.+ +.-+....
T Consensus 951 ~d~~lW~~vl~---~~n~~--RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLL---ESNPY--RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhc---CCcHH--HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 48888977762 22211 122333211100 02355555678889999999999999999988432 12345666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-
Q 003393 250 NVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFG- 328 (823)
Q Consensus 250 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~- 328 (823)
+.++....+.. ..+..++..+.... + ..-+...+...|.+++|..+|++.. .+...+..+.
T Consensus 1026 nlLi~tAIkaD--~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie 1087 (1630)
T 1xi4_A 1026 NLLILTAIKAD--RTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD---------VNTSAVQVLIE 1087 (1630)
T ss_pred HHHHHHHHHhC--hhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHH
Confidence 77777776663 36666666655421 1 3446677889999999999999852 1222233333
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003393 329 KAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALR 408 (823)
Q Consensus 329 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 408 (823)
..+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 7789999999998663 4678999999999999999999999663 378888999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 003393 409 LLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGF 488 (823)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 488 (823)
.+....+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence 999877754 33334445889999999988644332 2 346677778888999999999999999885
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003393 489 EPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLM 568 (823)
Q Consensus 489 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 568 (823)
..|..+..+|++.|++++|.+.+++.. +..+|..+-.+|...|++..|......+ ..+...+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 378999999999999999999998773 6789999999999999999998877643 3366677789
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHH
Q 003393 569 LNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVN--FKCRALQGMERAFQELQKHGY----KPDLVIFNSMLSIC 642 (823)
Q Consensus 569 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~ 642 (823)
+..|.+.|.++++..+++.....+ ..+..++..+...| .+.+++.++.+.|..-..... --+...|..+...|
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHH
Confidence 999999999999999998876655 33445555555444 455677777777764332100 02467899999999
Q ss_pred HccCChHHHH--------H-----HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003393 643 AKNSMYDRAN--------E-----MLHLILESGMQPNLVTYNNLMDMYARAG 681 (823)
Q Consensus 643 ~~~~~~~~A~--------~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~g 681 (823)
.+.|+++.|. . .|++.+.. ..+...|...+..|...+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 9999999998 2 23333322 347777777777777554
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=5.6e-16 Score=168.42 Aligned_cols=358 Identities=13% Similarity=0.052 Sum_probs=226.8
Q ss_pred ChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 003393 351 DSVTYNEVVGAYVR----AGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGR----AGKVNKALRLLNKMKESGCAPNV 422 (823)
Q Consensus 351 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 422 (823)
+...+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444544 455555555555554443 34444444445544 455555555555554432 33
Q ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003393 423 CTYNAVLGMLGK----KGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTL 498 (823)
Q Consensus 423 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (823)
..+..|...|.. .++.++|+..|++..+. | +...+..|
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----------------------------------~---~~~a~~~L 153 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-----------------------------------G---RDSGQQSM 153 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------------T---CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------------C---CHHHHHHH
Confidence 334444444444 44444444444444433 2 23333344
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 499 ISAYGR----CGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALAR----RGDWKAAESVILDMQNKGFKPSETSFSLMLN 570 (823)
Q Consensus 499 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 570 (823)
...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+..
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 227 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLAD 227 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 444443 445555555555555442 44455555555554 555666666665555543 2333333333
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cC
Q 003393 571 CYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK----NS 646 (823)
Q Consensus 571 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 646 (823)
.|.... ...++.++|...|++..+.+ +...+..+...|.. .+
T Consensus 228 ~y~~g~-------------------------------g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 228 MYYFGI-------------------------------GVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp HHHHTS-------------------------------SSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred HHHcCC-------------------------------CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 333200 00223344444444444432 34455555556655 78
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CH
Q 003393 647 MYDRANEMLHLILESGMQPNLVTYNNLMDMYARA-----GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG---LM 718 (823)
Q Consensus 647 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 718 (823)
++++|++.|+...+.+ +...+..|...|... +++++|+..|++..+.+ +...+..+...|...| ++
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 9999999999998764 567788888999887 89999999999999864 5677888888888866 78
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHH
Q 003393 719 QEAMRMLYEMTNRGIRPCIFTYNTFVSGYAG----QGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCK----ARKYKE 790 (823)
Q Consensus 719 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 790 (823)
++|+++|++..+.| +...+..|...|.. .+++++|++.++++.+.| +...+..|..+|.. .++.++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999864 67788889999988 899999999999999865 57788899999998 899999
Q ss_pred HHHHHHHHhhcCCC
Q 003393 791 AMDFLSKIKERDDS 804 (823)
Q Consensus 791 A~~~~~~~~~~~~~ 804 (823)
|.++++++.+.+++
T Consensus 422 A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 422 AWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCC
Confidence 99999999999854
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=3e-16 Score=163.40 Aligned_cols=299 Identities=12% Similarity=0.054 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003393 212 RAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISA 291 (823)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (823)
..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+ +++|...++++.+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGK-SKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 344444444555555555555555544431 2233344444444444444 444444444444432 2233445555555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC----CcccHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCChhHH
Q 003393 292 CGREGLLNEAKEFFAGLKLEGYVP----GTVTYNSL------------LQVFGKAGVYSEALSILKEMEDNNCPPDSVTY 355 (823)
Q Consensus 292 ~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~l------------i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 355 (823)
+...|++++|.+.|+.+.+. .| +...+..+ ...+...|++++|+..++++.+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 55555555555555555443 22 12222222 455566666666666666665543 3345556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---------
Q 003393 356 NEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYN--------- 426 (823)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--------- 426 (823)
..+...+...|++++|...++++.+.... +..++..+...+...|++++|...|++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 66666666666666666666666655322 5556666666666666666666666666554211 222221
Q ss_pred ---HHHHHHHcCCCHHHHHHHHHHhhhCCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003393 427 ---AVLGMLGKKGRSEEMMKILCDMKSSGCSPNR----ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLI 499 (823)
Q Consensus 427 ---~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 499 (823)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...++...+.. +.+..++..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 1133344555555555555554443111 11 112223334444444444444444444331 22334444444
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 003393 500 SAYGRCGSGVDATKMFEDMMK 520 (823)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~ 520 (823)
..+...|++++|.+.|+.+.+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.3e-16 Score=164.09 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFC 713 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 713 (823)
+|..+...|...|++++|.+.++++.+.... +...+..+...|...|++++|...++++.+.. +.+..++..++..+.
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3444444444445555555555554443321 23334444455555555555555555554432 223344445555555
Q ss_pred hcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003393 714 RQGLMQEAMRMLYEMTNRG--------IRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA 785 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 785 (823)
..|++++|...++++.+.. ...+..++..+..++...|++++|++.++++++.... +...|..++.+|.+.
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLM 283 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHh
Confidence 5555555555555544420 0112344455555555555555555555555543221 344455555555555
Q ss_pred CChHHHHHHHHHHhhcCCCC
Q 003393 786 RKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 786 g~~~~A~~~~~~~~~~~~~~ 805 (823)
|++++|.++++++.+..|++
T Consensus 284 g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCC
T ss_pred ccHHHHHHHHHHHHccCCCc
Confidence 55555555555555555543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.1e-15 Score=165.76 Aligned_cols=433 Identities=8% Similarity=0.029 Sum_probs=277.1
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003393 340 LKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCA 419 (823)
Q Consensus 340 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 419 (823)
|++.++.. +-+...|..++. +.+.|++++|..+|+++.+... -+...|..++..+.+.|++++|..+|+++....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444432 446778888887 4778889999999998887643 367788888888888899999999998888763
Q ss_pred CCHHHHHHHHHHH-HcCCCHHHHHH----HHHHhhhC-CCCC-ChhHHHHHHHHHHc---------cCCHHHHHHHHHHH
Q 003393 420 PNVCTYNAVLGML-GKKGRSEEMMK----ILCDMKSS-GCSP-NRITWNTMLTMCGN---------KGLDKYVNQVFREM 483 (823)
Q Consensus 420 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~~~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~ 483 (823)
|+...|...+... ...|+.++|.+ +|+..... |..| +...|...+..... .|+.+.|..+|+..
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5776777666433 34566655554 66665542 4433 44566666665443 56777888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hCC
Q 003393 484 KSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQ------NKG 557 (823)
Q Consensus 484 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~~ 557 (823)
++.........|..........|. . +...++. .+.+++..|..++.++. +..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 763111112233322221111110 0 0000000 01233444444444321 110
Q ss_pred ---CCCC--------HHHHHHHHHHHHcc----CCh----hHHHHHHHHHHhCCCCChHHHHHHHHHHhhh-------hh
Q 003393 558 ---FKPS--------ETSFSLMLNCYAKG----GNL----KGIRKIEKEIYAGRIFPSWMLLRTLILVNFK-------CR 611 (823)
Q Consensus 558 ---~~~~--------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 611 (823)
+.|+ ...|...+...... ++. +.+..++++.....+. +..++..++..+.. .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhcc
Confidence 1222 12333333221111 121 1334445544433221 23344444444443 56
Q ss_pred hHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCH
Q 003393 612 ALQ-------GMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPN-LVTYNNLMDMYARAGKC 683 (823)
Q Consensus 612 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 683 (823)
+++ +|..+|++..+.-..-+...|..++..+.+.|++++|..+|+++++.... + ...|..++..+.+.|++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCH
Confidence 665 88889998876322336789999999999999999999999999985422 3 35888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 003393 684 WKAEEILKGILKSGGTPDLVSYNTVIKG-FCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIK 761 (823)
Q Consensus 684 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 761 (823)
++|.++|++..+.. +.+...|...+.. +...|+.++|..+|++.++. .| +...|..++..+.+.|+.++|..+|+
T Consensus 373 ~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 373 KSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 99999999998752 2233333332222 34689999999999999884 34 47889999999999999999999999
Q ss_pred HHHhCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 762 HMFQHNC-KPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 762 ~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+++..+. .|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 9998643 232 457888899999999999999999999998884
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=6.4e-15 Score=161.85 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003393 475 YVNQVFREMKSCGFEPDRDTFNTLISAYGR-------CGSGV-------DATKMFEDMMKTGFTPCVTTYNAFLNALARR 540 (823)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 540 (823)
.+..+|++++... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4455565555432 3345556555555553 46655 5666666665421223455666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHH
Q 003393 541 GDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAF 620 (823)
Q Consensus 541 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 620 (823)
|++++|..+|+++.+. .|+. ....+..++..+.+.|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~---------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDID---------------------------------PTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSC---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccC---------------------------------chHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666666666653 2221 1123333444455567777788888
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-
Q 003393 621 QELQKHGYKPDLVIFNSMLSI-CAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGG- 698 (823)
Q Consensus 621 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 698 (823)
++..+.... +...|...+.. +...|++++|..+|+.+++... .+...|..++..+.+.|+.++|..+|++....+.
T Consensus 380 ~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 380 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 887765322 33333332222 3468999999999999988653 2678889999999999999999999999987632
Q ss_pred CC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003393 699 TP--DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 699 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
.| ....|...+......|+.+.+..+++++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 2347888888888899999999999998874
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=3e-16 Score=161.35 Aligned_cols=154 Identities=8% Similarity=-0.076 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--------CCCChhH
Q 003393 633 VIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSG--------GTPDLVS 704 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~ 704 (823)
..+..+...|...|++++|.+.++++++.... +...+..+...|...|++++|...++++.+.. ...+..+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 44555666677777777777777777765432 56777777788888888888888888777531 1233467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGY-C 783 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~ 783 (823)
+..++.+|...|++++|+..++++.+.. +.+...+..+..++...|++++|.+.++++++.... +...+..+..+| .
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEM 316 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHH
Confidence 7788888888888888888888888742 234677888888888888888888888888774322 567777777777 4
Q ss_pred hcCChH
Q 003393 784 KARKYK 789 (823)
Q Consensus 784 ~~g~~~ 789 (823)
..|+.+
T Consensus 317 ~~g~~~ 322 (330)
T 3hym_B 317 YIGDSE 322 (330)
T ss_dssp TTTC--
T ss_pred HhCchh
Confidence 555543
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=2.3e-16 Score=159.61 Aligned_cols=284 Identities=13% Similarity=0.147 Sum_probs=134.0
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCH
Q 003393 148 DVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKY 227 (823)
Q Consensus 148 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 227 (823)
...|+.++|.++++.+- ++.+|..++.++.+.|++++|++.|... .|...|..++.++...|++
T Consensus 14 ~~~~~ld~A~~fae~~~----------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN----------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 35677899999998872 3469999999999999999999999753 3677999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003393 228 EKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAG 307 (823)
Q Consensus 228 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 307 (823)
++|+..++..++. .+++.+.+.++.+|.+.|+ ++++.++++ .|+..+|..+...|...|++++|..+|..
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~-l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNR-LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ---------------------------------C-HHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCC-HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988877764 4567889999999999998 788887774 36778999999999999999999999997
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 003393 308 LKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNA 387 (823)
Q Consensus 308 ~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 387 (823)
+ ..|..|+.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......+ ..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 6 47999999999999999999999998 27899999999999999999996655542 2345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCC------ChhHH
Q 003393 388 VTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSS-GCSP------NRITW 460 (823)
Q Consensus 388 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~ 460 (823)
.....++..|.+.|.+++|..+++...... .-....|+-|...|++- +.++..+.++...++ ++++ +...|
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 556679999999999999999999998764 44677888887777765 334444444333222 2222 45678
Q ss_pred HHHHHHHHccCCHHHHHHH
Q 003393 461 NTMLTMCGNKGLDKYVNQV 479 (823)
Q Consensus 461 ~~ll~~~~~~~~~~~a~~~ 479 (823)
..+.-.|.+.++++.|...
T Consensus 286 ~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 8888888889999887653
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=4.6e-16 Score=162.74 Aligned_cols=310 Identities=9% Similarity=-0.059 Sum_probs=194.8
Q ss_pred HHHcCCCHHHHHH-HHHHhhhCCC---CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003393 431 MLGKKGRSEEMMK-ILCDMKSSGC---SPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCG 506 (823)
Q Consensus 431 ~~~~~g~~~~a~~-~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 506 (823)
++...|++++|++ .+++...... ..+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556677888887 7776554311 1134556677777888888888888888887764 456677778888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 003393 507 SGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEK 586 (823)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 586 (823)
++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++...... +...+..+ +....
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~-------~~~~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPA-------EEGAG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH-------HHHhh------
Confidence 8888888888877654 236777788888888888888888888887765321 11110000 00000
Q ss_pred HHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-
Q 003393 587 EIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQP- 665 (823)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~- 665 (823)
.. . ....+..+...+ ..|++++|..+++++++.....
T Consensus 178 ------------------------------------~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~ 215 (368)
T 1fch_A 178 ------------------------------------GA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI 215 (368)
T ss_dssp -------------------------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC
T ss_pred ------------------------------------hh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc
Confidence 00 0 000111122222 6677777777777777654221
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
+..++..+...|.+.|++++|+..|+++.+.. +.+..+|..++..+...|++++|+..|+++++.. +.+...+..+..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 293 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI 293 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 46677777777777888888888887777652 3356677777888888888888888888877742 234567777888
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003393 746 GYAGQGMFTEIDEVIKHMFQHNCKP----------NELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
+|.+.|++++|+..++++++..... ...+|..++.+|.+.|++++|..++++.++
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 8888888888888888877632221 157788888888888888888888775554
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.8e-15 Score=161.65 Aligned_cols=303 Identities=10% Similarity=-0.015 Sum_probs=154.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHH---HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 003393 436 GRSEEMMKILCDMKSSGCSPN-RITWNTMLTM---CGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGR----CGS 507 (823)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~ 507 (823)
+++++|+..|++..+. .|+ ...+..+..+ +...++.++|.+.+++..+.. +.+...+..+...+.. .++
T Consensus 152 ~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhH
Confidence 3455555555555443 222 2222222222 223445555555555555442 2334444444433333 345
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 003393 508 GVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKE 587 (823)
Q Consensus 508 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 587 (823)
.++|.+.+++..... +.+..++..+...|...|++++|...+.+..+.. +-+..++..+..+|...+...
T Consensus 229 ~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~-------- 298 (472)
T 4g1t_A 229 EGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV-------- 298 (472)
T ss_dssp -CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh--------
Confidence 666777777766543 2356667777777777788888877777776642 123344444433332110000
Q ss_pred HHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 003393 588 IYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNL 667 (823)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 667 (823)
.... ...........+.+++|...++.+.+.... +.
T Consensus 299 ------------------------------------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 334 (472)
T 4g1t_A 299 ------------------------------------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LF 334 (472)
T ss_dssp ------------------------------------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TC
T ss_pred ------------------------------------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hh
Confidence 0000 000000011122356777777777765432 55
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003393 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDL--VSYNTVIK-GFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFV 744 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 744 (823)
.++..+...|...|++++|+..|++.++....+.. ..+..+.. .+...|++++|+..|++.++ +.|+.......
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~- 411 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM- 411 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH-
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH-
Confidence 66777888888888888888888888775333221 12222322 23467888999999988887 55664433222
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 745 SGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
.+.+.+++++.++.++. +..+|..|+.+|...|++++|++.++++++.++.++.
T Consensus 412 --------~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 412 --------KDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp --------HHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC------------------
T ss_pred --------HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 24455666666664432 6778899999999999999999999999988887654
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.1e-15 Score=154.72 Aligned_cols=236 Identities=15% Similarity=0.171 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 003393 263 WDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKE 342 (823)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 342 (823)
.++|.++++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++.
T Consensus 19 ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 19 LDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 466777776662 2247777777777777777777777542 3555777777777777777777776665
Q ss_pred HHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003393 343 MEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNV 422 (823)
Q Consensus 343 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 422 (823)
..+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 5543 3445667777777777777777776664 256667777888888888888888888765
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003393 423 CTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAY 502 (823)
Q Consensus 423 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 502 (823)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +.....-...++..|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 217 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHH
Confidence 35777888888888888888888777 1677788888888888888877544332 223344455677788
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003393 503 GRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARR 540 (823)
Q Consensus 503 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 540 (823)
.+.|++++|..+++..+... .-...+|+-|...|++-
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 88888888888888777554 34566677766666554
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=180.88 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 003393 282 EFTCSTVISACGREGLLNEAKEFFAGLKL---EGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEV 358 (823)
Q Consensus 282 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (823)
..||+++|++|++.|++++|.++|++|.+ .|+.||+++||+||.+||+.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34666666666666666666666655543 356666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003393 359 VGAYVRAGF-YEEGAALIDTMSSKGLMPNAVTYTTLIDAYGR 399 (823)
Q Consensus 359 i~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 399 (823)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666665 35566666666666666666666666554433
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2e-15 Score=150.57 Aligned_cols=202 Identities=14% Similarity=0.092 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003393 596 SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKP-DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLM 674 (823)
Q Consensus 596 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 674 (823)
....+..++..+...++.++|.+.++++...+..| +...+..+...|...|++++|++.+++ ..+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 33444555566666677777888888887765444 456677777889999999999999887 35778888999
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 003393 675 DMYARAGKCWKAEEILKGILKSGGTPDLVSY---NTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG 751 (823)
Q Consensus 675 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 751 (823)
..|.+.|++++|.+.|+++.+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999876 3443211 22334445568999999999999986 3456788899999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHhhcCCCCCH
Q 003393 752 MFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKE-AMDFLSKIKERDDSFND 807 (823)
Q Consensus 752 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~ 807 (823)
++++|++.++++++..+. +..++..++..+...|+.++ +.++++++.+.+|+++.
T Consensus 215 ~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999999985433 68889999999999999976 57899999999998754
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=181.41 Aligned_cols=154 Identities=16% Similarity=0.128 Sum_probs=126.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc
Q 003393 242 LSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRS---RGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTV 318 (823)
Q Consensus 242 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 318 (823)
..--..|||+||++||+.|+ +++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~-leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQ-LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 34466789999999999998 8999999988764 4889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------HHHHH
Q 003393 319 TYNSLLQVFGKAGV-YSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPN------AVTYT 391 (823)
Q Consensus 319 ~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~ 391 (823)
|||+||.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..+..|+ +.+..
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~ 276 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSK 276 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchH
Confidence 99999999999998 578999999999999999999999998766554 344444444 3344443 44555
Q ss_pred HHHHHHHhcC
Q 003393 392 TLIDAYGRAG 401 (823)
Q Consensus 392 ~li~~~~~~g 401 (823)
.|.+.|.+.+
T Consensus 277 LL~dl~s~d~ 286 (1134)
T 3spa_A 277 LLRDVYAKDG 286 (1134)
T ss_dssp TTHHHHCCCS
T ss_pred HHHHHHccCC
Confidence 5666665544
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=2.3e-15 Score=157.42 Aligned_cols=289 Identities=10% Similarity=-0.014 Sum_probs=213.3
Q ss_pred HccCCHHHHHH-HHHHHHhCCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCH
Q 003393 293 GREGLLNEAKE-FFAGLKLEGY---VPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFY 368 (823)
Q Consensus 293 ~~~g~~~~A~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 368 (823)
...|++++|.+ .|++...... ..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888887 7776554321 1135678888889999999999999999998764 45677888888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHH
Q 003393 369 EEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNA---------------VLGMLG 433 (823)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------li~~~~ 433 (823)
++|...|+++.+.... +..++..+...+...|++++|...++++...... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999998876533 7788888999999999999999999998876432 2222211 133334
Q ss_pred cCCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003393 434 KKGRSEEMMKILCDMKSSGCSP-NRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDAT 512 (823)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 512 (823)
..|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7888999999999888753221 46778888888999999999999999887763 446778888899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHccCChhHHH
Q 003393 513 KMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKP----------SETSFSLMLNCYAKGGNLKGIR 582 (823)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~----------~~~~~~~ll~~~~~~~~~~~a~ 582 (823)
..++++.+.. +.+...+..+...+.+.|++++|...++++.+..... ...+|..+..++...|+.+.+.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999888753 3367888889999999999999999998877642111 2577888888888888888777
Q ss_pred HHHH
Q 003393 583 KIEK 586 (823)
Q Consensus 583 ~~~~ 586 (823)
.+..
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 6644
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=5.6e-16 Score=161.77 Aligned_cols=163 Identities=10% Similarity=0.002 Sum_probs=118.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQP-NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGF 712 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 712 (823)
.+..+...|...|++++|+++++++++..... +..++..+...|.+.|++++|+..|+++.+.. +.+..+|..++.+|
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATL 257 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455667778888888888888888764321 56778888888888888888888888888753 33677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----------CCHHHHHHHHH
Q 003393 713 CRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK-----------PNELTYKIVVD 780 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~l~~ 780 (823)
...|++++|+..|+++++. .| +..++..+..+|...|++++|+..++++++.... .+..+|..+..
T Consensus 258 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 258 ANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHH
Confidence 8888888888888888874 34 3677888888888888888888888888763211 02567888999
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 003393 781 GYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 781 ~~~~~g~~~~A~~~~~~~~ 799 (823)
++...|+.+.|.+..++.+
T Consensus 336 ~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 336 ALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHTCHHHHHHHHTTCC
T ss_pred HHHHcCcHHHHHHHHHhhH
Confidence 9999999988888776644
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=5e-16 Score=162.18 Aligned_cols=264 Identities=9% Similarity=-0.009 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003393 493 DTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCY 572 (823)
Q Consensus 493 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 572 (823)
..+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346666777777777777777777777653 2356677777777777777777777777776643 23466666777777
Q ss_pred HccCChhHHHHHHHHHHhCCCCChHHHH---------HHHHHHhhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003393 573 AKGGNLKGIRKIEKEIYAGRIFPSWMLL---------RTLILVNFKCRALQGMERAFQELQKHGYKP-DLVIFNSMLSIC 642 (823)
Q Consensus 573 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 642 (823)
...|++++|...++.+............ ..+...+...|++++|...|+++.+..... +..++..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777776666443211111110 123556666677777777777666653321 456666666677
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003393 643 AKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAM 722 (823)
Q Consensus 643 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 722 (823)
...|++++|++.|+++++.... +..+|..++.+|.+.|++++|+..|+++.+.. +.+..++..++.+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777777776665432 56666677777777777777777777766642 224566666677777777777777
Q ss_pred HHHHHHHHcC---CCC--------CHHHHHHHHHHHHcCCChhHHHHHH
Q 003393 723 RMLYEMTNRG---IRP--------CIFTYNTFVSGYAGQGMFTEIDEVI 760 (823)
Q Consensus 723 ~~~~~m~~~~---~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~ 760 (823)
..|+++++.. ..+ +..+|..+..++...|+.+.+.+..
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7777666521 000 2455666666666667666655544
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=7.4e-15 Score=150.60 Aligned_cols=282 Identities=10% Similarity=-0.031 Sum_probs=189.8
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003393 458 ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNAL 537 (823)
Q Consensus 458 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 537 (823)
..+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 445556666777777777777777776653 3456667777777777777777777777776653 23566677777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHH
Q 003393 538 ARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGME 617 (823)
Q Consensus 538 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 617 (823)
...|++++|...++++.+.... +...+..+...
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~---------------------------------------------- 132 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA---------------------------------------------- 132 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC-----------------------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------------------------------
Confidence 7777777777777777654211 11001000000
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003393 618 RAFQELQKHGYKPDLVIFNSMLS--ICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILK 695 (823)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 695 (823)
.++......+.. .+...|++++|.++++++.+.... +...+..+...|.+.|++++|...++++.+
T Consensus 133 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 133 -----------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 001111111212 255667777888888777776533 667777888888888888888888888876
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-----
Q 003393 696 SGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP----- 770 (823)
Q Consensus 696 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----- 770 (823)
.. +.+..++..++..+...|++++|...|+++.+.. +.+..++..+..++...|++++|++.++++++.....
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 53 3356778888888888888888888888887742 2346778888888888999999999988888643331
Q ss_pred ------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003393 771 ------NELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 771 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
+...|..++.+|.+.|++++|.++++++.+..
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 46778889999999999999999888766543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-13 Score=150.19 Aligned_cols=384 Identities=9% Similarity=-0.050 Sum_probs=222.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-
Q 003393 317 TVTYNSLLQVFGKAGVYSEALSILKEMEDN--------NCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSK-----G- 382 (823)
Q Consensus 317 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~- 382 (823)
...||.|...+...|++++|++.|++..+. .-+....+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666667777666666655431 11223456667777777777777777777665431 1
Q ss_pred -CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHcCCCHHHHHHHHHHhhhCCCCCC
Q 003393 383 -LMPNAVTYTTLIDAYGRA--GKVNKALRLLNKMKESGCAPNVCTYNAVLGM---LGKKGRSEEMMKILCDMKSSGCSPN 456 (823)
Q Consensus 383 -~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~~p~ 456 (823)
......++..+..++... +++++|+..|++..+.... +...+..+..+ +...++.++|++.+++..+... .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 011344555554444443 4678888888887765322 34444444333 3455677778888877766421 13
Q ss_pred hhHHHHHHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003393 457 RITWNTMLTMCG----NKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNA 532 (823)
Q Consensus 457 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 532 (823)
..++..+...+. ..++.++|.+++++..... +.+...+..+...|...|++++|...+++..+... -+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHH
Confidence 444444443333 3456778888888877654 45677888889999999999999999999887542 35666766
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhh
Q 003393 533 FLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRA 612 (823)
Q Consensus 533 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 612 (823)
+...|...+... .... ....+.... ..+.
T Consensus 287 lg~~y~~~~~~~---------~~~~--------------~~~~~~~~~----------------------------~~~~ 315 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR--------------ENGMYGKRK----------------------------LLEL 315 (472)
T ss_dssp HHHHHHHHHHHH---------HHC--------------------CHHH----------------------------HHHH
T ss_pred HHHHHHHHHHHh---------hhHH--------------HHHHHHHHH----------------------------HHhh
Confidence 665553221111 0100 000011100 1123
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHH-HHHcCCHhHHHHH
Q 003393 613 LQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLV--TYNNLMDM-YARAGKCWKAEEI 689 (823)
Q Consensus 613 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~g~~~~A~~~ 689 (823)
.+.|...|+...+.+.. +..++..+...|...|++++|++.|+++++....+... .+..+... +...|+.++|+..
T Consensus 316 ~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 316 IGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566667776665332 44577788899999999999999999999865443221 23333332 3467899999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 003393 690 LKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNC 768 (823)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 768 (823)
|++.++. .|+...... ..+.+.+++++.++.+ +.+..+|..|..+|...|++++|++.|+++++.+.
T Consensus 395 y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 395 FIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999875 444332222 2334455666666542 34577899999999999999999999999998553
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=2.6e-14 Score=146.48 Aligned_cols=232 Identities=13% Similarity=0.024 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003393 212 RAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISA 291 (823)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 291 (823)
..+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEK-DGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344555566666666666666666665542 2344555555555555555 566666666665543 3355566666667
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcccHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCChhHHH
Q 003393 292 CGREGLLNEAKEFFAGLKLEGYVPGTVTYNSL--------------LQ-VFGKAGVYSEALSILKEMEDNNCPPDSVTYN 356 (823)
Q Consensus 292 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (823)
+...|++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 777777777777777766552 1122222222 11 2455566666666666665543 22455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 003393 357 EVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKG 436 (823)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 436 (823)
.+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 5666666666666666666665554322 45555566666666666666666666655542 124455555555566666
Q ss_pred CHHHHHHHHHHhhh
Q 003393 437 RSEEMMKILCDMKS 450 (823)
Q Consensus 437 ~~~~a~~~~~~~~~ 450 (823)
++++|.+.++++.+
T Consensus 255 ~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 255 QYDLAAKQLVRAIY 268 (327)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 66666666555544
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=1.2e-13 Score=137.53 Aligned_cols=254 Identities=12% Similarity=0.088 Sum_probs=134.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHH
Q 003393 396 AYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKY 475 (823)
Q Consensus 396 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 475 (823)
-....|+++.|+..++................+.++|...|++++|+..++.. ..|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 34456777777776665543211111223445566677777777776655431 23455566666666666666777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003393 476 VNQVFREMKSCGFEP-DRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQ 554 (823)
Q Consensus 476 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 554 (823)
|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777776666554323 344555555666666777777666655 2355666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHH
Q 003393 555 NKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVI 634 (823)
Q Consensus 555 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 634 (823)
+.. |+.. ...+..+ ++..+...|++++|..+|+++.+.. ..+..+
T Consensus 158 ~~~--p~~~-~~~l~~a-------------------------------~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~ 202 (291)
T 3mkr_A 158 DQD--EDAT-LTQLATA-------------------------------WVSLAAGGEKLQDAYYIFQEMADKC-SPTLLL 202 (291)
T ss_dssp HHC--TTCH-HHHHHHH-------------------------------HHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHH
T ss_pred hhC--cCcH-HHHHHHH-------------------------------HHHHHhCchHHHHHHHHHHHHHHhC-CCcHHH
Confidence 542 2211 1111111 1111112244555555555555442 224455
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHH
Q 003393 635 FNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWK-AEEILKGILK 695 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 695 (823)
++.+..++.+.|++++|.+.|+++++.... +..++..++..+...|+.++ +.++++++.+
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555555555555555555554322 44455555555555555543 3455555554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=4.6e-14 Score=134.29 Aligned_cols=196 Identities=13% Similarity=-0.039 Sum_probs=156.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003393 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
..+..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|+..++++++..+. +...+..+..+|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 44556667777888888888889988877543 6788999999999999999999999999987643 778889999999
Q ss_pred HHc-----------CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003393 678 ARA-----------GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSG 746 (823)
Q Consensus 678 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 746 (823)
.+. |++++|+..|++.++.. +-+...|..+..++...|++++|+..|++.++.+ .+...+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 999 99999999999999863 2367888999999999999999999999999976 678889999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003393 747 YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
|...|++++|+..++++++..+. +...+..++.+|.+.|++++|.+.+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999985433 67888999999999999999999988764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.3e-13 Score=133.98 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 003393 527 VTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILV 606 (823)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 606 (823)
...+..+...+...|++++|..++++..+.. .+...+..+..++...|++++|...+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------------ 64 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDA------------------ 64 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHH------------------
Confidence 4567788888889999999999999888776 56677777777777777776666654443
Q ss_pred hhhhhhHHHHHHHHHHHHHCCC--CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003393 607 NFKCRALQGMERAFQELQKHGY--KPD----LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARA 680 (823)
Q Consensus 607 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 680 (823)
.+... .++ ..++..+...|...|++++|.+.|+.+.+.. |+ ...+.+.
T Consensus 65 -----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~ 118 (258)
T 3uq3_A 65 -----------------VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKL 118 (258)
T ss_dssp -----------------HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHH
T ss_pred -----------------HHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHH
Confidence 22111 112 4678888899999999999999999999854 34 2456677
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 003393 681 GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVI 760 (823)
Q Consensus 681 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 760 (823)
|++++|...++++.+.. +.+...+..++..+...|++++|+..|+++.+.. +.+..++..+..++...|++++|++.+
T Consensus 119 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88999999999998753 2245778889999999999999999999999852 335778899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003393 761 KHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 761 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
+++++.... +...|..++.+|.+.|++++|.+.++++.+..
T Consensus 197 ~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 197 NKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999986433 58889999999999999999999999999988
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=2.1e-12 Score=128.17 Aligned_cols=231 Identities=9% Similarity=-0.078 Sum_probs=184.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 003393 526 CVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLIL 605 (823)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 605 (823)
+..++..+...+...|++++|...|++..+.+ +...+..+...|....
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~----------------------------- 52 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ----------------------------- 52 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS-----------------------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC-----------------------------
Confidence 56677778888888888888888888877732 4444544544444400
Q ss_pred HhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Q 003393 606 VNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK----NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR-- 679 (823)
Q Consensus 606 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 679 (823)
...+++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+..+...|..
T Consensus 53 --~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 53 --GVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp --SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred --CcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 00455566666677666664 67788888888888 999999999999999864 77888899999999
Q ss_pred --cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----
Q 003393 680 --AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR----QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAG---- 749 (823)
Q Consensus 680 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---- 749 (823)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..+|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 999999999999998864 66778888888888 899999999999998864 56778888889988
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCC
Q 003393 750 QGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCK----ARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 750 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 805 (823)
.+++++|++.++++.+.+ +...+..+..+|.. .|++++|.++++++.+.+|+.
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999864 36778889999998 999999999999999998764
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=6.4e-13 Score=130.21 Aligned_cols=205 Identities=9% Similarity=-0.083 Sum_probs=173.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003393 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
..+..++..+...|++++|...|+++.+... .+..++..+...|...|++++|.+.++++.+.... +...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 3455566677777888888888888777643 36778999999999999999999999999987543 778899999999
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHH
Q 003393 678 ARAGKCWKAEEILKGILKSGGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEI 756 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 756 (823)
...|++++|.++++++.+.+..| +...+..++..+...|++++|...|+++.+.. +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998732334 45778889999999999999999999999853 23577889999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 757 DEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 757 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
...++++.+... .+...+..++..|.+.|++++|.++++++.+..|++.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999998543 3677889999999999999999999999999998864
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.4e-12 Score=134.25 Aligned_cols=251 Identities=13% Similarity=0.082 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 003393 527 VTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILV 606 (823)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 606 (823)
...|..+...+.+.|++++|+..+++.+.... -+...|..+..++...|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~----------------------------- 146 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQK----------------------------- 146 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC-----------------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHccc-----------------------------
Confidence 45677777777888888888888888776531 244455555555544443
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 003393 607 NFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKA 686 (823)
Q Consensus 607 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 686 (823)
++++|...|+++++.... +..+|..+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|
T Consensus 147 -----d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 147 -----DLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp -----CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTH
T ss_pred -----CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHH
Confidence 156666667777766443 6789999999999999999999999999997654 888999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC--ChhHHH
Q 003393 687 EEILKGILKSGGTPDLVSYNTVIKGFCR-QGLMQEA-----MRMLYEMTNRGIRPC-IFTYNTFVSGYAGQG--MFTEID 757 (823)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~ 757 (823)
+..|+++++... -+..+|+.+..++.. .|..++| +..|++.++. .|+ ...|..+..++...| ++++|+
T Consensus 220 l~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHH
Confidence 999999998743 377889999999998 6665777 5888888884 454 667888888898888 689999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---------ChHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHh
Q 003393 758 EVIKHMFQHNCKP-NELTYKIVVDGYCKAR---------KYKEAMDFLSKI-KERDDSFNDESVKRLTFRVREIL 821 (823)
Q Consensus 758 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 821 (823)
+.++++ +. .| +...+..++++|.+.| .+++|+++++++ .+.+|.. ...|..+...+....
T Consensus 297 ~~~~~~-~~--~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-~~~w~~~~~~l~~~~ 367 (382)
T 2h6f_A 297 NQLLDL-QP--SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR-KEYWRYIGRSLQSKH 367 (382)
T ss_dssp HHHHHH-TT--TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHHHH
T ss_pred HHHHHh-cc--CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHHHh
Confidence 999888 43 34 5778899999999875 358999999999 8888875 566777766666543
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-12 Score=127.81 Aligned_cols=224 Identities=13% Similarity=0.065 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 003393 493 DTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFK--PS----ETSFS 566 (823)
Q Consensus 493 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~~ 566 (823)
..+..+...+...|++++|..+|+++.+.. .+...+..+...+...|++++|...+.+..+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555666666666666666666666554 45566666666666666666666666665542110 01 12233
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003393 567 LMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNS 646 (823)
Q Consensus 567 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 646 (823)
.+..++. ..|++++|...|++..+.. |+. ..+...|
T Consensus 84 ~l~~~~~-----------------------------------~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYH-----------------------------------KLGDLKKTIEYYQKSLTEH--RTA-------DILTKLR 119 (258)
T ss_dssp HHHHHHH-----------------------------------HTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHH
T ss_pred HHHHHHH-----------------------------------HcccHHHHHHHHHHHHhcC--chh-------HHHHHHh
Confidence 3333333 3333333444444443321 221 2233445
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003393 647 MYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLY 726 (823)
Q Consensus 647 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 726 (823)
++++|...++.+...... +...+..+...|...|++++|...++++.+.. +.+..+|..++.+|...|++++|+..|+
T Consensus 120 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 566666666666654321 44556666666666677777777776666543 2245666666677777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 727 EMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 727 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
++++.. +.+...|..+..++...|++++|.+.++++++
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 766632 22355666667777777777777777777665
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=4e-13 Score=130.86 Aligned_cols=204 Identities=11% Similarity=0.069 Sum_probs=163.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003393 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYA 678 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 678 (823)
.+..+...+...|++++|...|+++.+... .+..++..+...|...|++++|.+.++++.+.... +...+..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 344556667778888888888988887643 36788889999999999999999999999987543 7788999999999
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 003393 679 RAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDE 758 (823)
Q Consensus 679 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 758 (823)
..|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|++
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998864 3467888999999999999999999999998852 3357788999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 759 VIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 759 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
.++++.+.... +..++..++.+|.+.|++++|.++++++.+..|++..
T Consensus 181 ~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 181 QFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 99999986433 6788999999999999999999999999999998743
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=2.2e-12 Score=123.86 Aligned_cols=207 Identities=9% Similarity=-0.023 Sum_probs=174.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003393 597 WMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDM 676 (823)
Q Consensus 597 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 676 (823)
...+..++..+...|++++|...|+++.+... .+..++..+...|...|++++|.+.++++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 34556677778888888889888988887643 36778999999999999999999999999987543 77888999999
Q ss_pred HHHc-CCHhHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 003393 677 YARA-GKCWKAEEILKGILKSGGTPD-LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFT 754 (823)
Q Consensus 677 ~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 754 (823)
|... |++++|...++++.+.+..|+ ...+..++.++...|++++|+..++++.+.. +-+...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999988322333 5778889999999999999999999999852 234778899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 755 EIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 755 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
+|.+.++++.+.....+...+..++..+...|+.++|..+++.+.+..|++.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 9999999999865423677788888899999999999999999999988864
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=7.4e-13 Score=141.21 Aligned_cols=223 Identities=7% Similarity=0.006 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 003393 529 TYNAFLNALARRG---DWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLIL 605 (823)
Q Consensus 529 ~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 605 (823)
.+..|...|.+.| +.++|+..|++..+.|. ++...+..+...|....
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~----------------------------- 227 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDAT----------------------------- 227 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGG-----------------------------
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCC-----------------------------
Confidence 5666666666666 66677777776666552 23333333444443220
Q ss_pred HhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 003393 606 VNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSI-C--AKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG- 681 (823)
Q Consensus 606 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 681 (823)
...++.++|...|+... .| +...+..+... | ...+++++|.+.|++..+.| +...+..|..+|. .|
T Consensus 228 --~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~ 297 (452)
T 3e4b_A 228 --LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGK 297 (452)
T ss_dssp --GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCS
T ss_pred --CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCC
Confidence 00123333444444333 11 33334444443 2 23556666666666655544 4445555555554 33
Q ss_pred ----CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----
Q 003393 682 ----KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR----QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAG---- 749 (823)
Q Consensus 682 ----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---- 749 (823)
++++|+..|++.. . -+...+..|...|.. ..++++|..+|++..+.|. ......|...|..
T Consensus 298 g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 298 WVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTB
T ss_pred CCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCC
Confidence 5666666666554 2 244455555555444 2256666666666655442 2233344444432
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003393 750 QGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 750 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
..+.++|..+++...+.|.. +.......+......++..+|.+..++..
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33566666666666655432 22222222222223334555555555443
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.54 E-value=2.4e-10 Score=125.61 Aligned_cols=446 Identities=10% Similarity=0.045 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 003393 334 SEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGK---VNKALRLL 410 (823)
Q Consensus 334 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~ 410 (823)
.+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+.+... .......|...+..-.+.|+ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34444555555544 457888888888888888888888888888876 33466777777777777787 88888888
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHcCCCH--------HHHHHHHHHhhh-CCC-CCC-hhHHHHHHHHHHc---------
Q 003393 411 NKMKESG-CAPNVCTYNAVLGMLGKKGRS--------EEMMKILCDMKS-SGC-SPN-RITWNTMLTMCGN--------- 469 (823)
Q Consensus 411 ~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~-~~~-~p~-~~~~~~ll~~~~~--------- 469 (823)
++..... ..|++..|...+....+.++. +.+.++|+..+. .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 8887753 136777777777665554432 334466666554 354 443 4566666654332
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003393 470 KGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESV 549 (823)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 549 (823)
.++.+.+..+|+.++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 23456677777777653222122333322221111111 011111111 01123333333
Q ss_pred HHHHHh--CCCC---------------C-----C---HHHHHHHHHHHHccCC-------hhHHHHHHHHHHhCCCCChH
Q 003393 550 ILDMQN--KGFK---------------P-----S---ETSFSLMLNCYAKGGN-------LKGIRKIEKEIYAGRIFPSW 597 (823)
Q Consensus 550 ~~~m~~--~~~~---------------~-----~---~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 597 (823)
+.++.. .++. | + ...|...+.--...+. .+.+..++++....... ..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-AP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CH
Confidence 333221 0110 1 0 1223333332222110 11233445555433222 34
Q ss_pred HHHHHHHHHhhhhhhHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC---------CCC-
Q 003393 598 MLLRTLILVNFKCRALQGME-RAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGM---------QPN- 666 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~- 666 (823)
.++...+..+...|+.++|. .+|++..... ..+...|...+....+.|++++|.++|+.+++... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 45555566666778888886 9999888753 33566777788888889999999999999886310 121
Q ss_pred -----------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC
Q 003393 667 -----------LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQ-GLMQEAMRMLYEMTNRGIR 734 (823)
Q Consensus 667 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 734 (823)
..+|...+....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. +.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p 501 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CC
Confidence 2367777888888999999999999998751111233444333333344 4589999999999985 34
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 735 PCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP--NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 735 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
-+...|...+......|+.+.|..+|++++.....+ ....|..+++.-.+.|+.+.+.++.+++.+..|+.+
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 456667788888888999999999999999764422 356788899988999999999999999999999865
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=1.1e-12 Score=130.34 Aligned_cols=244 Identities=11% Similarity=0.072 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhh
Q 003393 529 TYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNF 608 (823)
Q Consensus 529 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 608 (823)
.+......+...|++++|..++++..+... .+...+..+..++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~--------------------------------- 50 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYEL--------------------------------- 50 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHH---------------------------------
Confidence 445556677778888888888887776532 1233444444445444
Q ss_pred hhhhHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 003393 609 KCRALQGMERAFQELQKHGYKP--DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKA 686 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 686 (823)
|++++|...++++.+....+ ...+|..+...|...|++++|++.|+.+++.... +..++..+...|...|++++|
T Consensus 51 --~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 51 --AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp --TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHH
T ss_pred --hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHH
Confidence 45555555566655532122 2446888899999999999999999999987543 668899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC---hhHHHHHHHH
Q 003393 687 EEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGM---FTEIDEVIKH 762 (823)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~ 762 (823)
+..|++..+.. +.+...|..+...+...+++++|++.|+++++. .|+ ...+..+..++...|+ +++|+..+++
T Consensus 128 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 128 IQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 99999998763 335677777773455566999999999999984 444 6777888888888888 8889999999
Q ss_pred HHhCC-CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003393 763 MFQHN-CKPN------ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRL 813 (823)
Q Consensus 763 ~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 813 (823)
+++.. -.|+ ...|..++..|.+.|++++|.++++++.+.+|++. ..++.+
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~l 261 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK-KAIDGL 261 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH-HHHHHh
Confidence 98632 1123 25788899999999999999999999999999863 344333
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=3.3e-12 Score=136.16 Aligned_cols=242 Identities=14% Similarity=0.122 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 003393 297 LLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYS---EALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAA 373 (823)
Q Consensus 297 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (823)
++++|.+.|+...+.| +...+..|...|...+..+ ++.+.+......| +...+..+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 4455555555555443 2224444444444433322 2233333333322 23344444555555443333332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHH
Q 003393 374 LIDTMSSKGLMPNAVTYTTLIDAYGRAG---KVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKK----GRSEEMMKILC 446 (823)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~ 446 (823)
....+.+.-...+...+..|...|...| +.++|++.|++..+.|.. +...+..+...|... ++.++|++.|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 2222211111112224445555555555 555555555555555422 333333444444332 45555555555
Q ss_pred HhhhCCCCCChhHHHHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHH
Q 003393 447 DMKSSGCSPNRITWNTMLTM-C--GNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCG-----SGVDATKMFEDM 518 (823)
Q Consensus 447 ~~~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~ 518 (823)
... . -+...+..+... + ...++.++|.++|++..+.| +...+..|...|. .| +.++|.+.|++.
T Consensus 242 ~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 554 2 133344444433 2 33555566666665555544 4444555554444 33 556666665555
Q ss_pred HhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 003393 519 MKTGFTPCVTTYNAFLNALAR----RGDWKAAESVILDMQNKG 557 (823)
Q Consensus 519 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 557 (823)
. . -+...+..|...|.. ..++++|..+|++..+.|
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 4 2 244455555544444 225666666666555544
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=1.6e-12 Score=120.19 Aligned_cols=171 Identities=16% Similarity=0.092 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003393 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
+..+|..+...|...|++++|++.|+++++..+. +..++..+..+|.+.|++++|...+++..... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678889999999999999999999999987654 78889999999999999999999999998764 336677888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003393 711 GFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKE 790 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 790 (823)
.+...++++.|...+.+..+.. +-+...+..+..++...|++++|++.++++++..+. +...|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998842 335777888999999999999999999999985433 68889999999999999999
Q ss_pred HHHHHHHHhhcCCCC
Q 003393 791 AMDFLSKIKERDDSF 805 (823)
Q Consensus 791 A~~~~~~~~~~~~~~ 805 (823)
|.+.++++++.+|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999998864
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=4.7e-11 Score=118.40 Aligned_cols=229 Identities=11% Similarity=-0.061 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003393 491 DRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALAR----RGDWKAAESVILDMQNKGFKPSETSFS 566 (823)
Q Consensus 491 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 566 (823)
+...+..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5678888999999999999999999999984 367888889999999 999999999999998875 566666
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--
Q 003393 567 LMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK-- 644 (823)
Q Consensus 567 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 644 (823)
.+...|.... ...+++++|...|++..+.+ +..++..+...|..
T Consensus 79 ~lg~~~~~g~-------------------------------~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQ-------------------------------GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTS-------------------------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCC-------------------------------CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 6666555500 00344555666666666653 67788888888988
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 003393 645 --NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR----AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR---- 714 (823)
Q Consensus 645 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 714 (823)
.+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 999999999999999865 66778888888988 899999999999998864 56788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCC
Q 003393 715 QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAG----QGMFTEIDEVIKHMFQHNC 768 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 768 (823)
.+++++|+..|++..+.+ +...+..+..+|.. .+++++|++.++++.+.|.
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 999999999999999864 36778888889998 9999999999999998653
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=2.3e-12 Score=122.40 Aligned_cols=59 Identities=17% Similarity=-0.010 Sum_probs=22.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003393 285 CSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEME 344 (823)
Q Consensus 285 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 344 (823)
+..+...+.+.|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++..
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333334444444444444333321 1122333333333344444444444444333
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=5.1e-12 Score=125.58 Aligned_cols=203 Identities=13% Similarity=-0.043 Sum_probs=143.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003393 600 LRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR 679 (823)
Q Consensus 600 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 679 (823)
+..++..+...|++++|...|+++.+.... +..++..+...|...|++++|++.|+++++.... +...+..+..+|.+
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHH
Confidence 334445555566666666667776665432 5778888888888888888888888888876533 56778888888888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 003393 680 AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEV 759 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 759 (823)
.|++++|...|+++.+. .|+.......+..+...|++++|...+++.... ..++...+ .++..+...++.++|++.
T Consensus 124 ~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 88888888888888875 344444444445556678888888888877764 23333333 366677777888888888
Q ss_pred HHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003393 760 IKHMFQHNCKP---NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 760 ~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
++++.+..... +...|..++.+|.+.|++++|.++++++.+.+|++...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 88886532211 14677888888888888888888888888888876443
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=2e-09 Score=118.30 Aligned_cols=148 Identities=9% Similarity=0.027 Sum_probs=100.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC---HHHHHHHHHH
Q 003393 266 ILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGV---YSEALSILKE 342 (823)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~ 342 (823)
....|++....+ +.|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.+. ++.+..+|++
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 344445554444 568888999998888888999999999988876 34456677777888788888 9999999998
Q ss_pred HHhCC-CCCChhHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHHHHHHHHh---------cC
Q 003393 343 MEDNN-CPPDSVTYNEVVGAYVRAGFY--------EEGAALIDTMSS-KGL-MPN-AVTYTTLIDAYGR---------AG 401 (823)
Q Consensus 343 m~~~~-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~-~~~-~p~-~~~~~~li~~~~~---------~g 401 (823)
..... .+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 88753 137888888877766665553 334466766544 355 443 4567776655432 34
Q ss_pred CHHHHHHHHHHHHH
Q 003393 402 KVNKALRLLNKMKE 415 (823)
Q Consensus 402 ~~~~A~~~~~~~~~ 415 (823)
+++.+..+|++.+.
T Consensus 209 ~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 56778888888775
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.6e-11 Score=126.45 Aligned_cols=249 Identities=9% Similarity=0.056 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 492 RDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGD-WKAAESVILDMQNKGFKPSETSFSLMLN 570 (823)
Q Consensus 492 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 570 (823)
...|..+...+.+.|++++|++.++++++... -+...|+.+...+...|+ +++|+..+++...... -+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 34566777778888888888888888887542 367788888888888886 8888888888887542 25556666666
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 003393 571 CYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDR 650 (823)
Q Consensus 571 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 650 (823)
++...|++++|. ..|+++++.... +..+|..+..++...|++++
T Consensus 175 ~~~~~g~~~eAl-----------------------------------~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 175 LVEWLRDPSQEL-----------------------------------EFIADILNQDAK-NYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHTCCTTHH-----------------------------------HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHccCHHHHH-----------------------------------HHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHH
Confidence 666555555444 445555554333 67888889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHH-----HHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHH
Q 003393 651 ANEMLHLILESGMQPNLVTYNNLMDMYAR-AGKCWKA-----EEILKGILKSGGTPDLVSYNTVIKGFCRQG--LMQEAM 722 (823)
Q Consensus 651 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~ 722 (823)
|+..++++++..+. +...|+.+..++.+ .|..++| +..|++.++.. +-+...|+.+..++...| ++++|+
T Consensus 219 Al~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 99999999987654 78889999999988 6665777 58888888763 336678888888888888 689999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCC---------ChhHHHHHHHHH-HhCCCCC-CHHHHHHHHHHHHh
Q 003393 723 RMLYEMTNRGIRPCIFTYNTFVSGYAGQG---------MFTEIDEVIKHM-FQHNCKP-NELTYKIVVDGYCK 784 (823)
Q Consensus 723 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~p-~~~~~~~l~~~~~~ 784 (823)
+.+.++ +. ...+...+..++.+|.+.| .+++|+++++++ .+ +.| ....|..++..+..
T Consensus 297 ~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 297 NQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 999887 32 2334677888888888864 358999999999 66 455 35566666665544
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.47 E-value=1.6e-12 Score=138.00 Aligned_cols=279 Identities=12% Similarity=0.022 Sum_probs=166.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHH
Q 003393 497 TLISAYGRCGSGVDATKMFEDMMKTGFTPCV----TTYNAFLNALARRGDWKAAESVILDMQNK----GF-KPSETSFSL 567 (823)
Q Consensus 497 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~ 567 (823)
.+...+...|++++|...|+++.+.... +. .++..+...|...|++++|...+++..+. +. ......+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555566666666666665554221 22 34555555666666666666666555432 00 001223333
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC
Q 003393 568 MLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGY-KPDLVIFNSMLSICAKNS 646 (823)
Q Consensus 568 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 646 (823)
+...|...|++++|...+.... .++... +. .....++..+...|...|
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al----------------------------~~~~~~---~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHL----------------------------TLARQL---GDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----------------------------HHHHHH---TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH----------------------------HHHHHh---hchHHHHHHHHHHHHHHHHcC
Confidence 3344444444444443332220 001100 00 012235555666666666
Q ss_pred C-----------------hHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC--
Q 003393 647 M-----------------YDRANEMLHLILES----GM-QPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD-- 701 (823)
Q Consensus 647 ~-----------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-- 701 (823)
+ +++|++.+++.++. +- .....++..+...|...|++++|...+++..+.... .+
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 67777766665432 11 112346777888888889999888888887753111 11
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC
Q 003393 702 --LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG--IR---PCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH----NCKP 770 (823)
Q Consensus 702 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p 770 (823)
..++..+...|...|++++|...+++..+.. .. ....++..+..+|...|++++|++.++++++. +..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 2367788888999999999999998877631 11 11456788888999999999999999988752 1111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 771 -NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 771 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
...++..++.+|.+.|++++|.++++++.+..++...
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 2457788999999999999999999999988766543
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=6.8e-12 Score=124.45 Aligned_cols=251 Identities=11% Similarity=0.026 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 003393 493 DTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPS--ETSFSLMLN 570 (823)
Q Consensus 493 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~ 570 (823)
..+......+...|++++|...|+++.+... .+...+..+...+...|++++|...+++..+....++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 4456677889999999999999999998643 2556888899999999999999999999988432221 223445555
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 003393 571 CYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDR 650 (823)
Q Consensus 571 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 650 (823)
++...|+ +++|...|++..+.... +..++..+...|...|++++
T Consensus 83 ~~~~~~~-----------------------------------~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQ-----------------------------------DSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHHTTC-----------------------------------HHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccc-----------------------------------HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHH
Confidence 5555554 55555556655554332 55688888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHH
Q 003393 651 ANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL---MQEAMRMLYE 727 (823)
Q Consensus 651 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 727 (823)
|++.++++++... .+...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++
T Consensus 127 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 9999998887643 366777777734445569999999999998763 3346777778888888887 8888888888
Q ss_pred HHHc-CCCCC------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003393 728 MTNR-GIRPC------IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC 783 (823)
Q Consensus 728 m~~~-~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 783 (823)
+.+. .-.|+ ..+|..+...|...|++++|++.++++++..+. +...+..+.....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhc
Confidence 8763 11233 256778888999999999999999999985433 5655555554443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=5.4e-12 Score=133.58 Aligned_cols=303 Identities=13% Similarity=-0.011 Sum_probs=204.0
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CC
Q 003393 456 NRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPD----RDTFNTLISAYGRCGSGVDATKMFEDMMKT----GFT-PC 526 (823)
Q Consensus 456 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 526 (823)
....+......+...|++++|...++++.+.+ +.+ ..++..+...|...|++++|...+++.... +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455556667778888888888888877653 223 246677777888888888888888776542 111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 003393 527 VTTYNAFLNALARRGDWKAAESVILDMQNKGFK-PSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLIL 605 (823)
Q Consensus 527 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 605 (823)
..++..+...+...|++++|...+.+..+.... .+.. .....+..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHHHH
Confidence 445666777777888888888877776542100 0100 01123334445
Q ss_pred Hhhhhhh--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003393 606 VNFKCRA--------------------LQGMERAFQELQKH----GYKP-DLVIFNSMLSICAKNSMYDRANEMLHLILE 660 (823)
Q Consensus 606 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 660 (823)
.|...|+ +++|...+++..+. +..+ ...++..+...|...|++++|...++++++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 66666666654331 1111 234677888899999999999999998875
Q ss_pred cCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 661 SGMQ-PN----LVTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 661 ~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
.... ++ ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3111 12 237788899999999999999999988743111 11 45778889999999999999999998876
Q ss_pred cCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHH
Q 003393 731 RGI-RPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQH----NCKP-NELTYKIVVDGYCKARKYKE 790 (823)
Q Consensus 731 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 790 (823)
..- ..+ ..++..+..+|...|++++|.+.++++++. +..+ ...++..++..|...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 310 112 456788899999999999999999998752 2222 25567888889988887633
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=2.5e-12 Score=127.84 Aligned_cols=246 Identities=11% Similarity=-0.016 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHHHHHhCCCC---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHH
Q 003393 295 EGLLNEAKEFFAGLKLEGYV---PGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEG 371 (823)
Q Consensus 295 ~g~~~~A~~~~~~~~~~g~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 371 (823)
.|++++|++.|+.+.+.... .+..++..+...+...|++++|...|+++.+.. +.+..+|..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555555555555543210 123345555555555555555555555555432 22345555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 003393 372 AALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSS 451 (823)
Q Consensus 372 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 451 (823)
.+.|++..+.... +...+..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5555555554222 34455555555555555555555555555432 22222222333334445555555555544443
Q ss_pred CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003393 452 GCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFE---PDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVT 528 (823)
Q Consensus 452 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 528 (823)
. .++...+ .++..+...++.++|...+....+.... .+..++..+...|.+.|++++|...|++..+.. |+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 1 1122222 2444445555555555555554432100 013455666666666677777777776666542 211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 003393 529 TYNAFLNALARRGDWKAAESVI 550 (823)
Q Consensus 529 ~~~~li~~~~~~g~~~~a~~~~ 550 (823)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222234455556666655544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=3.3e-12 Score=131.22 Aligned_cols=276 Identities=12% Similarity=0.007 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 003393 494 TFNTLISAYGRCGSGVDATKMFEDMMKTGFTPC----VTTYNAFLNALARRGDWKAAESVILDMQNK----GFKP-SETS 564 (823)
Q Consensus 494 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~ 564 (823)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++..+. +..+ ....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4455566788889999999999988876322 3 356778888888899999999888876542 1000 1223
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 003393 565 FSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGY-KPD----LVIFNSML 639 (823)
Q Consensus 565 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~ 639 (823)
+..+...+... |++++|...+++..+... ..+ ..++..+.
T Consensus 86 ~~~l~~~~~~~-----------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 130 (338)
T 3ro2_A 86 SGNLGNTLKVL-----------------------------------GNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 130 (338)
T ss_dssp HHHHHHHHHHT-----------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-----------------------------------cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 33444444444 445555544444332100 011 33666777
Q ss_pred HHHHccCC--------------------hHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003393 640 SICAKNSM--------------------YDRANEMLHLILES----GMQ-PNLVTYNNLMDMYARAGKCWKAEEILKGIL 694 (823)
Q Consensus 640 ~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 694 (823)
..|...|+ +++|.+.+++.++. +.. ....++..+...|...|++++|...+++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77778888 88888888776542 111 123467788888999999999999999887
Q ss_pred HcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003393 695 KSGGT-PD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGI-RPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 695 ~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
+.... .+ ..++..++..+...|++++|...+++..+... ..+ ..++..+..++...|++++|.+.+++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 43110 11 23778888999999999999999998876210 111 4567888999999999999999999987
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003393 765 QH----NCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 765 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+. +-.+ ...++..++..|.+.|++++|.++++++.+..++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 52 1111 24578889999999999999999999999887654
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.42 E-value=7.5e-11 Score=115.35 Aligned_cols=199 Identities=13% Similarity=0.051 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003393 354 TYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLG 433 (823)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 433 (823)
.+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+... .+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHH
Confidence 3444444444555555555555554443211 344455555555555555555555555544321 13444555555555
Q ss_pred cCCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003393 434 KKGRSEEMMKILCDMKSSGCSP-NRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDAT 512 (823)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 512 (823)
..|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555421222 23344445555555555555555555555432 234555566666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003393 513 KMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNK 556 (823)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 556 (823)
..++.+.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666665532 234555666666666666666666666666554
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.2e-11 Score=130.88 Aligned_cols=281 Identities=13% Similarity=0.019 Sum_probs=199.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC
Q 003393 489 EPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPC----VTTYNAFLNALARRGDWKAAESVILDMQNK----GFKP 560 (823)
Q Consensus 489 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~ 560 (823)
......+......+...|++++|...|+++.+.... + ..++..+...+...|++++|...+++.... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566677788888899999999999888876322 3 356778888888899999999988876542 1011
Q ss_pred -CHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC----CCC-CCHHH
Q 003393 561 -SETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH----GYK-PDLVI 634 (823)
Q Consensus 561 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 634 (823)
....+..+...+...|+++ +|...+++..+. +.. ....+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~-----------------------------------~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFD-----------------------------------EAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------------------------------HHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHH-----------------------------------HHHHHHHHHHHHHHhcccccchHHH
Confidence 1223344444444445544 444444443321 100 01347
Q ss_pred HHHHHHHHHccCC--------------------hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 003393 635 FNSMLSICAKNSM--------------------YDRANEMLHLILES----GMQP-NLVTYNNLMDMYARAGKCWKAEEI 689 (823)
Q Consensus 635 ~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 689 (823)
+..+...|...|+ +++|.+.+++.++. +..+ ...++..+...|...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7788888999999 99999999887652 1111 234678889999999999999999
Q ss_pred HHHHHHcCC-CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHH
Q 003393 690 LKGILKSGG-TPD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGI-RPC----IFTYNTFVSGYAGQGMFTEIDEV 759 (823)
Q Consensus 690 ~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~ 759 (823)
+++..+... .++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|++.
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 999875311 112 23788899999999999999999999876210 111 45678899999999999999999
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003393 760 IKHMFQH----NCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 760 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
++++++. +-.+ ...++..++.+|...|++++|.++++++.+..++.
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 9999752 1111 15678899999999999999999999988765443
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=1.5e-11 Score=119.53 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHH
Q 003393 526 CVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLIL 605 (823)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 605 (823)
....|..+...+...|++++|..+++++.+.. +.+...+..+..++...|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~----------------------------- 71 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVN----------------------------- 71 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTT-----------------------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-----------------------------
Confidence 45566777777888888888888888877643 224445555555555544
Q ss_pred HhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 003393 606 VNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWK 685 (823)
Q Consensus 606 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 685 (823)
++++|...++++.+... .+..++..+...|...|++++|.+.++++.+.... +...+..+...|.+.|++++
T Consensus 72 ------~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 72 ------ELERALAFYDKALELDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp ------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHH
T ss_pred ------CHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHH
Confidence 45555555665555432 26778888899999999999999999999887543 77888899999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 686 AEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 686 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
|...++++.+.. +.+...+..++..+...|++++|+..|+++.+.. +.+..++..+..+|...|++++|.+.++++++
T Consensus 144 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 144 ALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999998763 3467888899999999999999999999998852 33577889999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHH
Q 003393 766 HNCKPNELTYKIVVD 780 (823)
Q Consensus 766 ~~~~p~~~~~~~l~~ 780 (823)
.... +...+..+..
T Consensus 222 ~~p~-~~~~~~~~~~ 235 (243)
T 2q7f_A 222 IQPD-HMLALHAKKL 235 (243)
T ss_dssp HCTT-CHHHHHHHTC
T ss_pred cCcc-hHHHHHHHHH
Confidence 5433 4555544433
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.42 E-value=9.6e-11 Score=112.18 Aligned_cols=202 Identities=12% Similarity=0.054 Sum_probs=108.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003393 210 DVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVI 289 (823)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (823)
+..++..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKV-NDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 44566666666777777777777777666542 2234455555555555554 455555555555443 22444555555
Q ss_pred HHHHcc-CCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 003393 290 SACGRE-GLLNEAKEFFAGLKLEGYVPG-TVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGF 367 (823)
Q Consensus 290 ~~~~~~-g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (823)
..+... |++++|.+.++.+.+.+..|+ ...+..+...+.+.|++++|+..++++.+.. +.+...+..+...+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 566666 666666666666555211222 3445555555556666666666665555432 2234455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 368 YEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKE 415 (823)
Q Consensus 368 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 415 (823)
+++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555443212444455555555555555555555555543
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=5.3e-11 Score=127.72 Aligned_cols=195 Identities=10% Similarity=-0.095 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003393 596 SWMLLRTLILVNFKCRAL-QGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLM 674 (823)
Q Consensus 596 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 674 (823)
+...+..+...+...|++ ++|...|++..+.... +..+|..+...|...|++++|.+.|+++++.. |+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 344455555555666666 6666666665554322 34556666666666666666666666665543 3445555555
Q ss_pred HHHHHc---------CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCC--
Q 003393 675 DMYARA---------GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQ--------GLMQEAMRMLYEMTNRGIRP-- 735 (823)
Q Consensus 675 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p-- 735 (823)
.+|... |++++|+..|++..+.. +.+...|..+..+|... |++++|+..|++.++. .|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCc
Confidence 666555 66666666666665542 22445555566666555 5566666666666552 23
Q ss_pred --CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003393 736 --CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSK 797 (823)
Q Consensus 736 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 797 (823)
+...|..+..+|...|++++|++.++++++.... +...+..+..++...|++++|.+.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455556666666666666666666666553222 344555566666666666655554433
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.39 E-value=2.2e-11 Score=130.67 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003393 613 LQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMY-DRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILK 691 (823)
Q Consensus 613 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 691 (823)
++++...+++..... ..+...+..+...|...|++ ++|++.|+++++.... +...|..+..+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555544432 23556666666667777777 7777777776665432 45666677777777777777777777
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CChh
Q 003393 692 GILKSGGTPDLVSYNTVIKGFCRQ---------GLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ--------GMFT 754 (823)
Q Consensus 692 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 754 (823)
+..+. .|+...+..+..+|... |++++|++.|++.++.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 77664 34556666666666666 77777777777766631 22355666666666666 6677
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 755 EIDEVIKHMFQHNCK--PNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 755 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
+|++.++++++.... -+...|..++.+|...|++++|.+.++++.+.+|++.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 777777777664320 1566666777777777777777777777777776654
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=6.1e-10 Score=112.29 Aligned_cols=192 Identities=7% Similarity=-0.012 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHH
Q 003393 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLV-TYNNLMDMYARAGKCWKAEEIL 690 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 690 (823)
..++|..+|++..+.-..-+...|..++..+.+.|++++|.++|+++++.... +.. .|..++..+.+.|++++|..+|
T Consensus 79 ~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 35788888888887311236678999999999999999999999999985432 333 8999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-C
Q 003393 691 KGILKSGGTPDLVSYNTVIKGFC-RQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN-C 768 (823)
Q Consensus 691 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 768 (823)
++..+.. +.+...|...+.... ..|++++|.++|++.++. .+-+...|..++..+.+.|++++|+.+|+++++.. +
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 9999864 234455554443322 379999999999999884 22357788999999999999999999999999853 3
Q ss_pred CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 769 KP--NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 769 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.| ....|..++..+.+.|+.++|..+++++.+..|+..
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 44 467889999999999999999999999999999754
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.1e-10 Score=107.65 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 596 SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMD 675 (823)
Q Consensus 596 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 675 (823)
+..++..+...|...|++++|...|++..+..+. +..++..+...|.+.|++++|...++.+...... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 3456677788888888889999999998887544 6789999999999999999999999999887644 6778888889
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH
Q 003393 676 MYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTE 755 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 755 (823)
.+...++++.|...+++..+.. +.+...+..+..+|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998763 3467889999999999999999999999999852 2357789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCH
Q 003393 756 IDEVIKHMFQHNCKPNE 772 (823)
Q Consensus 756 A~~~~~~~~~~~~~p~~ 772 (823)
|++.++++++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 9999999998 45543
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.2e-11 Score=131.23 Aligned_cols=271 Identities=14% Similarity=-0.004 Sum_probs=169.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHH
Q 003393 465 TMCGNKGLDKYVNQVFREMKSCGFEPDR----DTFNTLISAYGRCGSGVDATKMFEDMMKT----G-FTPCVTTYNAFLN 535 (823)
Q Consensus 465 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~ 535 (823)
..+...|++++|...++++.+.+ ..+. ..+..+...|...|++++|...+++..+. + ......++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 34445555555555555554432 1121 34555555666666666666666555432 1 0112345666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhh---
Q 003393 536 ALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRA--- 612 (823)
Q Consensus 536 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 612 (823)
.|...|++++|...+.+..+.. ...++.. .....+..+...|...|+
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLA---------------RQLGDRL---------------SEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH---------------HHhhchH---------------HHHHHHHHHHHHHHHcCcccc
Confidence 7777788887777777765420 0000000 001122233334444444
Q ss_pred --------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HH
Q 003393 613 --------------LQGMERAFQELQKH----GYKP-DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQ-PN----LV 668 (823)
Q Consensus 613 --------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~ 668 (823)
+++|...+++..+. +..+ ...++..+...|...|++++|++.++++++.... .+ ..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 55555555543321 1111 2347778888999999999999999988763211 11 23
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-----CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHH
Q 003393 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGT-----PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRP-CIF 738 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~ 738 (823)
++..+...|...|++++|...+++..+.... ....++..+...|...|++++|...+++.++. +..+ ...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 7788899999999999999999988753111 11467888899999999999999999998763 1111 134
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003393 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
++..+..+|...|++++|.+.++++++.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6788999999999999999999999874
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=4.7e-12 Score=128.49 Aligned_cols=250 Identities=14% Similarity=0.124 Sum_probs=156.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHH
Q 003393 526 CVTTYNAFLNALARRGDWKAAESVILDMQNK-------GFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWM 598 (823)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 598 (823)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---------- 95 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA---------- 95 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----------
Confidence 3456677777777888888888887777652 11122344555555666666666555544332
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCC-CHHHHH
Q 003393 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILES------GMQP-NLVTYN 671 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~ 671 (823)
..+++............++..+...|...|++++|.+.++++++. +..+ ....+.
T Consensus 96 ------------------l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 96 ------------------LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 222222211111223457778888889999999999999888764 2112 345677
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHc------CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-
Q 003393 672 NLMDMYARAGKCWKAEEILKGILKS------GGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR-------GIRPC- 736 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~- 736 (823)
.+...|...|++++|+.+++++.+. +..+ ...++..+..+|...|++++|.+.++++.+. ...+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8888999999999999999988764 1122 2356788889999999999999999988862 11111
Q ss_pred ------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 737 ------IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 737 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
...+..+...+...+.+.++...++....... .+..++..++.+|.+.|++++|.++++++.+..|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11223334445566677777777777765321 25678899999999999999999999999887654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=7.8e-11 Score=123.37 Aligned_cols=238 Identities=11% Similarity=-0.015 Sum_probs=161.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHh
Q 003393 533 FLNALARRGDWKAAESVILDMQNKGF-KPS----ETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVN 607 (823)
Q Consensus 533 li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 607 (823)
....+...|++++|...+++..+.-. .++ ..++..+...|...|+++.|...+...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a------------------- 169 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA------------------- 169 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------
Confidence 44556677888888888877765310 111 233444555555555555544443322
Q ss_pred hhhhhHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc
Q 003393 608 FKCRALQGMERAFQELQKHGY-K-PDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQ-PN----LVTYNNLMDMYARA 680 (823)
Q Consensus 608 ~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~ 680 (823)
.+++.. .+. . ....+++.+...|...|++++|.+.++++++.... .+ ..++..+..+|...
T Consensus 170 ---------l~~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 170 ---------YEIYKE---HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp ---------HHHHHT---CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHh---CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 111111 110 0 12347788888999999999999999988753111 11 24778899999999
Q ss_pred CCHhHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCC
Q 003393 681 GKCWKAEEILKGILKS----GG-TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPCIFTYNTFVSGYAGQG 751 (823)
Q Consensus 681 g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g 751 (823)
|++++|+..+++..+. +. .....++..+...|.+.|++++|...+++..+. +.......+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998862 22 223567888999999999999999999988763 11111233577888899999
Q ss_pred C---hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 752 M---FTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 752 ~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+ +++|+.++++. +..+ ....+..++..|...|++++|.++++++.+...+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9 77777777766 2333 3556788999999999999999999999865443
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=1.1e-10 Score=112.12 Aligned_cols=209 Identities=12% Similarity=0.073 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003393 597 WMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDM 676 (823)
Q Consensus 597 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 676 (823)
...+......+...|++++|...|++..+....++...+..+..++...|++++|++.+++.++.... +...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 35566667777788888888888888777654356666666777778888888888888888776533 56677777888
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 003393 677 YARAGKCWKAEEILKGILKSGGTPDL-------VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC---IFTYNTFVSG 746 (823)
Q Consensus 677 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~ 746 (823)
|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++++ +.|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHH
Confidence 888888888888888877653 2233 3466677777778888888888888776 3454 3456666666
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003393 747 YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 819 (823)
|.. .+...++++...+.. +...|..+ .....|.+++|..+++++.+..|++. ....+...++.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~--~~~~~l~~i~~ 225 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRT--EIKQMQDQVKA 225 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHT
T ss_pred HHH-----HHHHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHH
Confidence 643 334445555554322 33334333 23445667999999999999999864 33344444443
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=5.2e-11 Score=110.02 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003393 633 VIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGF 712 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 712 (823)
..+..+...+...|++++|.+.++.+.+... .+...+..+...|...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4566677788888999999999988877543 367788888999999999999999999988763 34677888889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003393 713 CRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
...|++++|.+.++++.+. .+.+...+..++.++...|++++|++.++++.+.... +...+..++.+|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998885 2345778888899999999999999999999886432 6788899999999999999999
Q ss_pred HHHHHHhhcCCCCC
Q 003393 793 DFLSKIKERDDSFN 806 (823)
Q Consensus 793 ~~~~~~~~~~~~~~ 806 (823)
++++++.+..|++.
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999998887764
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=2.7e-11 Score=135.02 Aligned_cols=168 Identities=12% Similarity=0.034 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003393 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
+..+++.+...|.+.|++++|++.|+++++.... +..+|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3468888889999999999999999999887543 67888899999999999999999999998863 225678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003393 711 GFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYK 789 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 789 (823)
+|...|++++|++.|++.++. .|+ ...|..+..+|...|++++|++.|+++++.... +...|..|+.+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 999999999999999998884 454 678889999999999999999999999985433 5778889999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 003393 790 EAMDFLSKIKERDD 803 (823)
Q Consensus 790 ~A~~~~~~~~~~~~ 803 (823)
+|.+.++++.+..+
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999888876543
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=5.4e-11 Score=122.10 Aligned_cols=279 Identities=14% Similarity=0.044 Sum_probs=195.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHH
Q 003393 459 TWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPD----RDTFNTLISAYGRCGSGVDATKMFEDMMKT----GFT-PCVTT 529 (823)
Q Consensus 459 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 529 (823)
.+......+...|++++|..+++++.+.. +.+ ...+..+...|...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44455567889999999999999998864 223 367888899999999999999999987643 111 12557
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC-------------hhHHHHHHHHHHhC
Q 003393 530 YNAFLNALARRGDWKAAESVILDMQNKGF-KPS----ETSFSLMLNCYAKGGN-------------LKGIRKIEKEIYAG 591 (823)
Q Consensus 530 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~-------------~~~a~~~~~~~~~~ 591 (823)
+..+...+...|++++|...+.+..+... ..+ ..++..+...+...|+ .+.+...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 78888999999999999999998765310 011 1133333333433333 1100000
Q ss_pred CCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C
Q 003393 592 RIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH----GYKP-DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQ-P 665 (823)
Q Consensus 592 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 665 (823)
+++|...+++..+. +..+ ...++..+...|...|++++|.+.++++.+.... .
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 55555555543321 1111 2346778888899999999999999988753111 1
Q ss_pred ----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C
Q 003393 666 ----NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----G 732 (823)
Q Consensus 666 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~ 732 (823)
...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...++++.+. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1237788889999999999999999988753111 11 457788899999999999999999988763 1
Q ss_pred CCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003393 733 IRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 733 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
..+ ...++..+..+|...|++++|.+.++++++.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 111 1346788999999999999999999999873
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=2.7e-10 Score=119.19 Aligned_cols=230 Identities=10% Similarity=-0.077 Sum_probs=158.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC-----HHHHH
Q 003393 498 LISAYGRCGSGVDATKMFEDMMKT----GFTP-CVTTYNAFLNALARRGDWKAAESVILDMQNKGFK-PS-----ETSFS 566 (823)
Q Consensus 498 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~-----~~~~~ 566 (823)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+.+..+.... .+ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677889999999999888763 1111 2457788888899999999999998887653100 11 12344
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHH
Q 003393 567 LMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH----GYKP-DLVIFNSMLSI 641 (823)
Q Consensus 567 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~ 641 (823)
.+..+|...|++++| ...|++..+. +..+ ...++..+...
T Consensus 189 ~lg~~~~~~g~~~~A-----------------------------------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 233 (383)
T 3ulq_A 189 LFATNFLDLKQYEDA-----------------------------------ISHFQKAYSMAEAEKQPQLMGRTLYNIGLC 233 (383)
T ss_dssp HHHHHHHHTTCHHHH-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHH-----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 444445555555444 4444443321 1111 12477788899
Q ss_pred HHccCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC----CCCChhHHHHHHHHH
Q 003393 642 CAKNSMYDRANEMLHLILES----GM-QPNLVTYNNLMDMYARAGKCWKAEEILKGILKSG----GTPDLVSYNTVIKGF 712 (823)
Q Consensus 642 ~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~ 712 (823)
|...|++++|++.++++++. +. .....++..+...|.+.|++++|...+++..+.. -......+..+...|
T Consensus 234 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 234 KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998872 22 2245678889999999999999999999887531 111123356778888
Q ss_pred HhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 713 CRQGL---MQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 713 ~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
...|+ +++|+.++++. +..++ ...+..+...|...|++++|.+.++++.+
T Consensus 314 ~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 314 LSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88898 77777777765 23333 44677889999999999999999999975
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=5.5e-09 Score=105.27 Aligned_cols=131 Identities=12% Similarity=0.023 Sum_probs=78.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYA-RAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGF 712 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 712 (823)
+|..++..+.+.|++++|..+|+++++... .+...|...+.... ..|++++|..+|++.++.. +.+...|..++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~ 213 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYL 213 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 555566666666666666666666665432 23334433333322 2467777777777666542 22456666666777
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003393 713 CRQGLMQEAMRMLYEMTNRG-IRP--CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
.+.|++++|..+|++.++.. +.| ....|..++..+...|+.++|..+++++.+.
T Consensus 214 ~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776642 344 2455666666666677777777777777653
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=3.3e-09 Score=110.51 Aligned_cols=271 Identities=10% Similarity=0.017 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHH
Q 003393 495 FNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVT----TYNAFLNALARRGDWKAAESVILDMQNKGF-KPSE----TSF 565 (823)
Q Consensus 495 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~----~~~ 565 (823)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+.+...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556678899999999999887754222322 456667778889999999999888765211 1121 224
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhC----CCC--C-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCC----CHHH
Q 003393 566 SLMLNCYAKGGNLKGIRKIEKEIYAG----RIF--P-SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKP----DLVI 634 (823)
Q Consensus 566 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 634 (823)
..+...+...|++++|...++..... +.. + ....+..+...+...|++++|...+++..+..... ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 45556677777777777666655321 111 1 12233445555555666666666665554432111 1234
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---hhHH
Q 003393 635 FNSMLSICAKNSMYDRANEMLHLILESGMQPNL-VTYN-----NLMDMYARAGKCWKAEEILKGILKSGGTPD---LVSY 705 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 705 (823)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++..+...... ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 445555555566666666666555432111110 1111 122334455666666666555543221110 1133
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 706 NTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPCI-FTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 706 ~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555555566666666665555431 111111 1344445555555666666666665554
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1.4e-09 Score=113.51 Aligned_cols=198 Identities=12% Similarity=0.053 Sum_probs=142.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHC----CC-CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHH
Q 003393 600 LRTLILVNFKCRALQGMERAFQELQKH----GY-KP-DLVIFNSMLSICAKNSMYDRANEMLHLILES----GMQ-PNLV 668 (823)
Q Consensus 600 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~ 668 (823)
+..+...|...|+++.|...+++..+. +. .+ ...+++.+...|...|++++|.+.++++++. +-. ....
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334445555555555555555554331 10 11 2447788889999999999999999988763 111 1234
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHH-----cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC-HHH
Q 003393 669 TYNNLMDMYARAGKCWKAEEILKGILK-----SGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGI---RPC-IFT 739 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~ 739 (823)
++..+..+|...|++++|+..+++..+ .. +....++..+...|.+.|++++|...+++..+..- .+. ...
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 678889999999999999999999886 32 22367788899999999999999999999987311 122 344
Q ss_pred HHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 003393 740 YNTFVSGYAGQGM---FTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKER 801 (823)
Q Consensus 740 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 801 (823)
+..+...+...|+ +++|+.++++. +..+ ....+..++..|...|++++|.++++++.+.
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6667777888888 77777777763 2233 2456778999999999999999999998754
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=4.1e-11 Score=121.45 Aligned_cols=245 Identities=16% Similarity=0.142 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC
Q 003393 492 RDTFNTLISAYGRCGSGVDATKMFEDMMKT-------GFTPCVTTYNAFLNALARRGDWKAAESVILDMQNK------GF 558 (823)
Q Consensus 492 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~ 558 (823)
..++..+...+...|++++|..+++++.+. .......++..+...+...|++++|..++++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677777778888888888888777652 12224566777888888889999988888887653 11
Q ss_pred -CCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003393 559 -KPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNS 637 (823)
Q Consensus 559 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 637 (823)
......+..+...+...|++++|...++.. .++++............++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----------------------------~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA----------------------------LEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH----------------------------HHHHHHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH----------------------------HHHHHHhcCCCChHHHHHHHH
Confidence 112334455555555555555555443332 111111111111113456778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-------CCCCCh-
Q 003393 638 MLSICAKNSMYDRANEMLHLILES------GMQP-NLVTYNNLMDMYARAGKCWKAEEILKGILKS-------GGTPDL- 702 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~- 702 (823)
+...|...|++++|+++++++++. +..+ ...++..+..+|...|++++|...++++.+. ...+..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 888899999999999999988764 1122 3456788889999999999999999988753 111111
Q ss_pred hH------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 703 VS------YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 703 ~~------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.. +..+...+...+.+.+|...++..... ...+..++..+..+|...|++++|+++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 222223334445556666667666552 122356788899999999999999999999876
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=2e-10 Score=114.43 Aligned_cols=229 Identities=14% Similarity=0.068 Sum_probs=138.3
Q ss_pred HccCChhHHHHHHHHHHh-------CCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 003393 573 AKGGNLKGIRKIEKEIYA-------GRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH------GYKP-DLVIFNSM 638 (823)
Q Consensus 573 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 638 (823)
...|+++.|...+++... .........+..+...+...|++++|...+++..+. +..+ ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456677777766665532 122223456667777777888888888887776653 1112 23467777
Q ss_pred HHHHHccCChHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCCC-ChhH
Q 003393 639 LSICAKNSMYDRANEMLHLILES-----GM--QPNLVTYNNLMDMYARAGKCWKAEEILKGILKS------GGTP-DLVS 704 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~ 704 (823)
...|...|++++|.+.++++++. +. .....++..+...|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777888888888888777653 11 113456677777777888888888888777653 1122 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH---hCC-CCC-C
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNR-------GIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMF---QHN-CKP-N 771 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~p-~ 771 (823)
+..+..+|...|++++|..+++++.+. ...+. ...|..+...+...+....+..+.+... ..+ ..| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 677777778888888888888777652 11222 2233333333333333222222111111 111 112 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 003393 772 ELTYKIVVDGYCKARKYKEAMDFLSKIKER 801 (823)
Q Consensus 772 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 801 (823)
..++..++.+|.+.|++++|.++++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999998864
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=8.8e-09 Score=107.26 Aligned_cols=266 Identities=11% Similarity=-0.016 Sum_probs=148.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHH
Q 003393 465 TMCGNKGLDKYVNQVFREMKSCGFEPDRD----TFNTLISAYGRCGSGVDATKMFEDMMKTGF-TPCV----TTYNAFLN 535 (823)
Q Consensus 465 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~ 535 (823)
..+...|++++|...+++.....-..+.. .+..+...+...|++++|...+++...... ..+. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556677777777777766543122221 344555666677777777777766654210 0111 22455566
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCC--C--hHHHHHHHH
Q 003393 536 ALARRGDWKAAESVILDMQNK----GFK--P-SETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIF--P--SWMLLRTLI 604 (823)
Q Consensus 536 ~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~ 604 (823)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...++........ + ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 667777777777777766542 111 2 1234455666677777777777776666432221 1 123445566
Q ss_pred HHhhhhhhHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 003393 605 LVNFKCRALQGMERAFQELQKHGYKPD--LVIFN----SMLSICAKNSMYDRANEMLHLILESGMQPN---LVTYNNLMD 675 (823)
Q Consensus 605 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 675 (823)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...++.......... ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 667777777777777776654311111 11111 222335567777777777776654332111 223455666
Q ss_pred HHHHcCCHhHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 676 MYARAGKCWKAEEILKGILKS----GGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
.+...|++++|...+++.... +...+. ..+..+..++...|+.++|...+++..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 677777777777777766532 111112 2455556667777777777777777665
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=7.3e-10 Score=123.53 Aligned_cols=165 Identities=10% Similarity=0.027 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 596 SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMD 675 (823)
Q Consensus 596 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 675 (823)
+...+..+...+.+.|++++|+..|++.++.... +..++..+..+|.+.|++++|++.|+++++.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456777888888888999999999998887433 6789999999999999999999999999997644 7889999999
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChh
Q 003393 676 MYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFT 754 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~ 754 (823)
+|.+.|++++|++.|++.++.. +-+..+|+.+..+|...|++++|++.|++.++ +.|+ ...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999864 33678999999999999999999999999998 4565 678899999999999999
Q ss_pred HHHHHHHHHHh
Q 003393 755 EIDEVIKHMFQ 765 (823)
Q Consensus 755 ~A~~~~~~~~~ 765 (823)
+|++.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=8.2e-09 Score=100.15 Aligned_cols=185 Identities=8% Similarity=-0.037 Sum_probs=137.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003393 616 MERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGM-QPNLVTYNNLMDMYARAGKCWKAEEILKGIL 694 (823)
Q Consensus 616 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 694 (823)
+...|+++.+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677766554 34566666888889999999999999999887653 1266778888999999999999999999998
Q ss_pred HcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 695 KSGGTP-----DLVSYNTVIKG--FCRQG--LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 695 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 55 24444455544 33334 899999999998764 45533444455588899999999999997765
Q ss_pred CC-----C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 766 HN-----C---KP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 766 ~~-----~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
.. - .| |..+...+|......|+ +|.++++++.+..|+.+-
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 31 0 13 56777677777777787 899999999999998753
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=1.1e-09 Score=109.33 Aligned_cols=172 Identities=8% Similarity=-0.078 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHHc-CCHhHHHHHHHHHHHcCCCC-C---
Q 003393 632 LVIFNSMLSICAKNSMYDRANEMLHLILESGMQP-N----LVTYNNLMDMYARA-GKCWKAEEILKGILKSGGTP-D--- 701 (823)
Q Consensus 632 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~--- 701 (823)
..+|+.+..+|...|++++|+..+++.++..... + ..++..+..+|... |++++|+..|++..+..... +
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 3477788888888999999999888877532110 1 35778889999996 99999999999988641111 1
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--
Q 003393 702 -LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI------FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNE-- 772 (823)
Q Consensus 702 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-- 772 (823)
..+++.++..+...|++++|+..|++..+....... ..|..+..++...|++++|+..+++.++. .|+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC
Confidence 356888899999999999999999999984322111 15777888899999999999999999863 3331
Q ss_pred ----HHHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCC
Q 003393 773 ----LTYKIVVDGYC--KARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 773 ----~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
..+..++.+|. ..+++++|++.++++...+|+.
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 13445566664 4578999999998888887754
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=3.3e-09 Score=110.57 Aligned_cols=230 Identities=8% Similarity=-0.065 Sum_probs=154.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----CHHHH
Q 003393 497 TLISAYGRCGSGVDATKMFEDMMKTGF-TP----CVTTYNAFLNALARRGDWKAAESVILDMQNKGFK-P-----SETSF 565 (823)
Q Consensus 497 ~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~-----~~~~~ 565 (823)
.....+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+.... . ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456678888888888888765311 11 2346777778888888888888888876542100 0 12234
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----CCCCC-CHHHHHHHHH
Q 003393 566 SLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQK----HGYKP-DLVIFNSMLS 640 (823)
Q Consensus 566 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 640 (823)
..+..+|...|+++.|. ..|++..+ .+..+ ...++..+..
T Consensus 186 ~~lg~~y~~~~~~~~A~-----------------------------------~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKAL-----------------------------------PHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp HHHHHHHHHTTCHHHHH-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHH-----------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444555555555444 44443332 11111 2346778888
Q ss_pred HHHccCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC---C-ChhHHHHHHHH
Q 003393 641 ICAKNSMYDRANEMLHLILE-----SGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT---P-DLVSYNTVIKG 711 (823)
Q Consensus 641 ~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~ 711 (823)
.|...|++++|++.+++.++ .... ...++..+...|.+.|++++|...+++..+.... + ....+..+...
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~l 309 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAV 309 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999886 3322 3677888999999999999999999998864211 1 12445666667
Q ss_pred HHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 712 FCRQGL---MQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 712 ~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+...++ +++|+..+++. +..++ ...+..+...|...|++++|.+.++++.+
T Consensus 310 y~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 310 YKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777788 77787777762 22233 34567889999999999999999999875
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=2.6e-09 Score=98.43 Aligned_cols=165 Identities=13% Similarity=0.017 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003393 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
..+..++..+...|++++|...++++.+... .+..++..+...+...|++++|.+.++.+.+... .+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 3445566777788888899888888776533 3677888999999999999999999999998753 3778888999999
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 003393 678 ARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 757 (823)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998763 4467888899999999999999999999998853 335778899999999999999999
Q ss_pred HHHHHHHhC
Q 003393 758 EVIKHMFQH 766 (823)
Q Consensus 758 ~~~~~~~~~ 766 (823)
+.++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999999864
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=3.5e-09 Score=101.44 Aligned_cols=207 Identities=11% Similarity=-0.036 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003393 560 PSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSML 639 (823)
Q Consensus 560 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 639 (823)
.+...+......+...|++++|...++........++...+..+..++...|++++|...|++..+.... +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888889999999999999999999987766455566666899999999999999999999987543 567888999
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---hhHHHHHH
Q 003393 640 SICAKNSMYDRANEMLHLILESGMQPNL-------VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD---LVSYNTVI 709 (823)
Q Consensus 640 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 709 (823)
..|...|++++|++.++++++.... +. ..|..+...+...|++++|+..|+++++. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999986543 44 45788888999999999999999999875 454 46777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003393 710 KGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 710 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
.+|...| ...++++...+ ..+...|..+. ....+.+++|+..++++++..+. +..+...+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 8876554 34455555532 22344444333 33456789999999999985432 444444443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=1.6e-09 Score=108.25 Aligned_cols=180 Identities=10% Similarity=-0.007 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHH
Q 003393 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILES----GMQP-NLVTYNNLMDMYARAGKCWKA 686 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 686 (823)
++++|...|++. ...|...|++++|.+.|+++++. +-.+ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777776665 34577899999999999988763 2111 146889999999999999999
Q ss_pred HHHHHHHHHcCCC-CC----hhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC---C----HHHHHHHHHHHHcCCCh
Q 003393 687 EEILKGILKSGGT-PD----LVSYNTVIKGFCRQ-GLMQEAMRMLYEMTNRGIRP---C----IFTYNTFVSGYAGQGMF 753 (823)
Q Consensus 687 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p---~----~~~~~~l~~~~~~~g~~ 753 (823)
+..+++.++.... .+ ..+++.+..+|... |++++|+..|++.++. .| + ..++..+...+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999998753111 01 35788899999996 9999999999998873 12 1 35688899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003393 754 TEIDEVIKHMFQHNCKPNE------LTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 754 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
++|+..++++.+....... ..|..++.+|...|++++|...++++.+.+|++...
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999999999985443222 157788899999999999999999999999987654
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=3.1e-09 Score=99.87 Aligned_cols=161 Identities=13% Similarity=0.046 Sum_probs=117.2
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHhHHHHHHHHHHHcCCCCCh
Q 003393 639 LSICAKNSMYDRANEMLHLILESGMQPNLVTYNN----------------LMDMYARAGKCWKAEEILKGILKSGGTPDL 702 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 702 (823)
...+...|++++|+..|+++++..+. +...|.. +..+|.+.|++++|+..|++.++.. +-+.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 33445566666666666666654321 3344444 8889999999999999999999864 3367
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC--hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003393 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGM--FTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
..+..+..++...|++++|+..|++.++. .|+ ...|..+..+|...|. .+.+...++.... ..|....+..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 88999999999999999999999999984 454 6778888888766554 3445556666542 333344556677
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCC
Q 003393 780 DGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 780 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
.++...|++++|...++++++..|+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 78888999999999999999999973
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=6.2e-09 Score=102.11 Aligned_cols=174 Identities=11% Similarity=0.074 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC-hhHH
Q 003393 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPN---LVTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD-LVSY 705 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~ 705 (823)
+...+..+...+.+.|++++|+..|+.+++.... + ...+..+..+|.+.|++++|+..|+++++.... +. ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444555555566666666666666666654322 2 445556666666666666666666666654211 11 2345
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-HHH-----------------HHHHHHHHHcCCChhHHHHH
Q 003393 706 NTVIKGFCR--------QGLMQEAMRMLYEMTNRGIRPC-IFT-----------------YNTFVSGYAGQGMFTEIDEV 759 (823)
Q Consensus 706 ~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~-~~~-----------------~~~l~~~~~~~g~~~~A~~~ 759 (823)
..+..++.. .|++++|+..|+++++. .|+ ... +..+..+|...|++++|+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 555556666 66666666666666653 222 112 25668889999999999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCCH
Q 003393 760 IKHMFQHNCKP--NELTYKIVVDGYCKA----------RKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 760 ~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
++++++..+.. ....+..++.+|... |++++|.+.++++.+..|+.+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 99998754332 245678888888866 8899999999999999998763
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=5.5e-09 Score=90.28 Aligned_cols=133 Identities=18% Similarity=0.256 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003393 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYA 748 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 748 (823)
.|..++..|...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45666777777888888888888777653 2356677777778888888888888888877742 234566777888888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 749 GQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 749 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
..|++++|.+.++++.+.... +...+..++.+|.+.|++++|.++++++.+.+|+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888888875432 5677788888888888888888888888877765
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.8e-09 Score=119.79 Aligned_cols=172 Identities=7% Similarity=-0.110 Sum_probs=117.1
Q ss_pred hhhhhHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003393 608 FKCRALQGMERAFQELQ--------KHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR 679 (823)
Q Consensus 608 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 679 (823)
...|++++|.+.+++.. +.. ..+...+..+...|...|++++|++.|+++++.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 34556666666666665 332 224556777777777788888888888887775533 66777777777888
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHH
Q 003393 680 AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDE 758 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 758 (823)
.|++++|+..|+++++.. +.+...|..+..+|.+.|++++ ++.|++.++. .| +...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888877653 2255677777778888888888 8888877773 33 35667777778888888888888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003393 759 VIKHMFQHNCKP-NELTYKIVVDGYCKARK 787 (823)
Q Consensus 759 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 787 (823)
.++++++. .| +...|..++.+|...|+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 88877763 34 35666677777766554
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=2.2e-08 Score=94.26 Aligned_cols=179 Identities=10% Similarity=0.026 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHhHHHHHH
Q 003393 615 GMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG----KCWKAEEIL 690 (823)
Q Consensus 615 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 690 (823)
+|.+.|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3556677777664 77888889999999999999999999999865 67788888888887 6 899999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHH
Q 003393 691 KGILKSGGTPDLVSYNTVIKGFCR----QGLMQEAMRMLYEMTNRGIR-PCIFTYNTFVSGYAG----QGMFTEIDEVIK 761 (823)
Q Consensus 691 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 761 (823)
++..+.| +..++..|...|.. .+++++|+++|++..+.|.. -+...+..|...|.. .+++++|+++++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998754 67788888888877 88999999999999885421 026778888888888 889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHhhcCCCC
Q 003393 762 HMFQHNCKPNELTYKIVVDGYCKA-R-----KYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 762 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~~ 805 (823)
+..+. ..+...+..|..+|... | +.++|.++++++.+.+...
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 99985 22455678888888764 3 8999999999999887553
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.00 E-value=6.6e-09 Score=103.28 Aligned_cols=232 Identities=15% Similarity=0.089 Sum_probs=139.2
Q ss_pred hcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 003393 504 RCGSGVDATKMFEDMMK-------TGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNK------GF-KPSETSFSLML 569 (823)
Q Consensus 504 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll 569 (823)
..|++++|..++++.++ ...+....++..+...+...|++++|...+.+..+. +- .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555544443 111223556777788888888888888888877653 11 11234455566
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 003393 570 NCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYD 649 (823)
Q Consensus 570 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 649 (823)
.+|...|++++|...+... ..++++...........++..+...|...|+++
T Consensus 93 ~~~~~~g~~~~A~~~~~~a----------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRA----------------------------LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHH----------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhccHHHHHHHHHHH----------------------------HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 6666666666665554332 222222211111123457888888999999999
Q ss_pred HHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-------CCCC-ChhHHHHHHHHHHh
Q 003393 650 RANEMLHLILES------GMQP-NLVTYNNLMDMYARAGKCWKAEEILKGILKS-------GGTP-DLVSYNTVIKGFCR 714 (823)
Q Consensus 650 ~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~ 714 (823)
+|...++++++. .-.| ...++..+..+|...|++++|..+++++.+. ...+ ....|..+...+..
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 999999988864 1122 3467888899999999999999999998753 1122 22334444444443
Q ss_pred cCCH------HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 715 QGLM------QEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 715 ~g~~------~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.+.. .++...++.... ..| ...++..+..+|...|++++|.++++++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp TCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3332 222222222111 112 245678899999999999999999999876
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=4.1e-08 Score=93.56 Aligned_cols=188 Identities=6% Similarity=-0.019 Sum_probs=112.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 003393 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKP-D-LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNL--VTYNNLM 674 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~ 674 (823)
.+..++..+...|++++|...|+++.+..+.. . ...+..+..+|.+.|++++|+..|+++++..+.... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34445566677777777777777776653321 1 245666667777777777777777777765432111 1344444
Q ss_pred HHHHH------------------cCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003393 675 DMYAR------------------AGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP 735 (823)
Q Consensus 675 ~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 735 (823)
.++.+ .|++++|+..|+++++. .|+. .++.+.... ..+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH-------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH-------
Confidence 44443 23445555555554443 1221 111111000 0000000
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 736 CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 736 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
......+...|...|++++|+..++++++..+... ...+..++.+|.+.|++++|.+.++.+....|+..
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 00113466778899999999999999998533311 35688899999999999999999999999888764
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=1e-06 Score=94.17 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003393 511 ATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNK 556 (823)
Q Consensus 511 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 556 (823)
+..+|++++... +.+...|...+..+.+.|+.+.|..++++....
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 445555555432 234555666666666666666666666666554
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=2.5e-09 Score=94.21 Aligned_cols=128 Identities=9% Similarity=-0.055 Sum_probs=71.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 003393 674 MDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGM 752 (823)
Q Consensus 674 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 752 (823)
..++...|++++|+..+++..... +-+...+..+...|.+.|++++|++.|++.++. .| +..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 334445556666666666554321 112234445566666666666666666666653 33 34556666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHhhcCCCC
Q 003393 753 FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMD-FLSKIKERDDSF 805 (823)
Q Consensus 753 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~ 805 (823)
+++|+..++++++..+. +...|..++.+|.+.|++++|.+ +++++.+.+|++
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 66666666666653322 45566666666666666655443 346666666664
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=1.7e-08 Score=101.55 Aligned_cols=168 Identities=10% Similarity=-0.027 Sum_probs=107.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC--C-C--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--C-CCC--hhHHHH
Q 003393 638 MLSICAKNSMYDRANEMLHLILESGM--Q-P--NLVTYNNLMDMYARAGKCWKAEEILKGILKSG--G-TPD--LVSYNT 707 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~--~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~--~~~~~~ 707 (823)
....|...|++++|.+.|.++.+... . + -..+|+.+..+|.+.|++++|+..|++.++.. . .+. ..+++.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556677888888877777664311 1 0 12466777777778888888888887766421 0 111 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-HHHHHH
Q 003393 708 VIKGFCRQGLMQEAMRMLYEMTNR----GIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH----NCKPN-ELTYKI 777 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~ 777 (823)
+..+|.. |++++|+..|++.++. +... ...++..+..+|...|++++|+..++++++. +..+. ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 7777777 8888888888777652 1000 1345677777788888888888888877652 11111 225566
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 778 VVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 778 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
++.++...|++++|...++++. ..|.+..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 6667777788888888888888 7776653
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=4.7e-08 Score=84.25 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=104.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFC 713 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 713 (823)
.+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4566777788888899999988888876533 66778888888888899999999999888764 335677888888889
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003393 714 RQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
..|++++|.+.++++.+.. +.+...+..++.++...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999888752 335677888888899999999999999888764
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.96 E-value=2.5e-08 Score=93.60 Aligned_cols=169 Identities=9% Similarity=0.031 Sum_probs=123.1
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 003393 604 ILVNFKCRALQGMERAFQELQKHGYKPDLVIFNS----------------MLSICAKNSMYDRANEMLHLILESGMQPNL 667 (823)
Q Consensus 604 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 667 (823)
...+...|++++|...|++..+..+. +...|.. +..+|.+.|++++|+..|+++++..+. +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CH
Confidence 34455666777777777776665221 2334555 888999999999999999999997644 78
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL--MQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
..+..+..+|...|++++|+..|+++++.. +.+..+|..+..+|...|+ .+.+...++.... ..|....+..+..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~ 165 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 899999999999999999999999999864 3367888889888876654 4455666666542 2333344555677
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003393 746 GYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
++...|++++|+..|+++++ +.|+......+.
T Consensus 166 ~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 77888999999999999998 466655444443
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=4.4e-07 Score=88.08 Aligned_cols=144 Identities=9% Similarity=0.072 Sum_probs=68.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-CChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003393 406 ALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCS-PNRITWNTMLTMCGNKGLDKYVNQVFREMK 484 (823)
Q Consensus 406 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 484 (823)
|+..|++....+ .++...+..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555444433 223333345555555555555555555555443221 133444444555555555555555555554
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003393 485 SCGFEP-----DRDTFNTLISAY--GRCG--SGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQ 554 (823)
Q Consensus 485 ~~~~~~-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 554 (823)
+. .| +..+...|+.++ ...| +..+|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 23 133333343332 2222 566666666665543 2232222333335566666666666665443
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.94 E-value=4.2e-08 Score=96.15 Aligned_cols=189 Identities=8% Similarity=-0.041 Sum_probs=130.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHHHHHH
Q 003393 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPD---LVIFNSMLSICAKNSMYDRANEMLHLILESGMQ--PNLVTYNN 672 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 672 (823)
..+......+...|++++|...|+++.+..+. + ..++..+..+|.+.|++++|+..|+.+++..+. .....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34445556666777777777778877765332 2 457777778888888888888888888875432 12345667
Q ss_pred HHHHHHH--------cCCHhHHHHHHHHHHHcCCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 003393 673 LMDMYAR--------AGKCWKAEEILKGILKSGGTPDLVSY-----------------NTVIKGFCRQGLMQEAMRMLYE 727 (823)
Q Consensus 673 l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~ 727 (823)
+..++.. .|++++|+..|+++++.... +.... ..+...|.+.|++++|+..|++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777 88888888888888775321 22333 5568889999999999999999
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHH
Q 003393 728 MTNRGIRPC----IFTYNTFVSGYAGQ----------GMFTEIDEVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKE 790 (823)
Q Consensus 728 m~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 790 (823)
+++. .|+ ...+..+..+|... |++++|+..++++++..+... ......+...+.+.|++++
T Consensus 174 ~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 174 VFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 9884 343 35677788888766 889999999999998533211 2334445555555554443
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.94 E-value=2.2e-08 Score=110.74 Aligned_cols=152 Identities=6% Similarity=-0.095 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 003393 611 RALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEIL 690 (823)
Q Consensus 611 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 690 (823)
|++++|...|++..+.... +...+..+...|...|++++|.+.+++.++.... +...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555566666655544221 3455555555566666666666666666554322 4455555566666666666666666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHHhC
Q 003393 691 KGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ---GMFTEIDEVIKHMFQH 766 (823)
Q Consensus 691 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 766 (823)
++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++... |++++|.+.++++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6655542 2234555555566666666666666666655531 11244555555555555 5666666666666553
No 104
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.91 E-value=2.9e-07 Score=91.82 Aligned_cols=182 Identities=10% Similarity=-0.021 Sum_probs=133.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC---CC--hh
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNL-----VTYNNLMDMYARAGKCWKAEEILKGILKSGGT---PD--LV 703 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~ 703 (823)
.+...+..+...|++++|.+.++..++....... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667788999999999999988875432111 22345666778889999999999998854211 11 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCC-CH
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNR-GIRPC-----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN----CKP-NE 772 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 772 (823)
+|+.++..|...|++++|+..|+++.+. ...++ ..++..++.+|...|++++|++.++++++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999998831 01222 2578899999999999999999999997531 111 16
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHhhcCCCCCHHHHHHHHH
Q 003393 773 LTYKIVVDGYCKARKYKEA-MDFLSKIKERDDSFNDESVKRLTF 815 (823)
Q Consensus 773 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~ 815 (823)
.+|..++.+|.+.|++++| ..+++++...........+...+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~ 280 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALV 280 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHH
Confidence 6789999999999999999 888988876554444444433333
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=3.9e-09 Score=93.01 Aligned_cols=145 Identities=8% Similarity=-0.072 Sum_probs=117.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003393 638 MLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL 717 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 717 (823)
|..++...|++++|+..++........ +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 445566788999999999988764321 44567789999999999999999999999874 3377899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003393 718 MQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEV-IKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
+++|+..|++.++. .|+ ...|..+..+|.+.|++++|.+. ++++++..+. +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999999999984 554 67899999999999999877665 6889885433 67888888888888875
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.90 E-value=7e-07 Score=87.81 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hcc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 003393 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSIC----AKN---SMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCW 684 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 684 (823)
+++++...++.+...+++ +..+|+.-...+ ... +++++++++++.+++...+ +..+|+.-..++.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccC
Confidence 566777777777766444 455666544444 444 7899999999999987755 8888888888888899988
Q ss_pred --HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-hH
Q 003393 685 --KAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL------MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMF-TE 755 (823)
Q Consensus 685 --~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~ 755 (823)
++++.++++++.... |..+|+.....+...++ ++++++.+++++... +-|...|+.+...+.+.|+. ++
T Consensus 162 ~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHH
Confidence 999999999987544 77888888877777776 899999999999853 33677888888888888874 44
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh-cCCC
Q 003393 756 IDEVIKHMFQHN-CKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKE-RDDS 804 (823)
Q Consensus 756 A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 804 (823)
+..+.+++.+.+ ..| +...+..++++|.+.|+.++|.+.++.+.+ .+|-
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH
Confidence 666777776543 112 678899999999999999999999999997 5665
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=5.8e-08 Score=91.73 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=63.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003393 635 FNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR 714 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 714 (823)
+..+...+...|++++|++.|++++ .++...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344445555555555555555442 2345555555555555555555555555555442 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 715 QGLMQEAMRMLYEMTNRGIRPCI----------------FTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.|++++|++.|++..+.. +.+. ..+..+..++...|++++|++.++++++
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555555421 1111 3444445555555555555555555544
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.90 E-value=1.1e-08 Score=115.09 Aligned_cols=163 Identities=10% Similarity=-0.066 Sum_probs=141.4
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003393 643 AKNSMYDRANEMLHLIL--------ESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR 714 (823)
Q Consensus 643 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 714 (823)
...|++++|++.+++++ +... .+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 5432 366788899999999999999999999999863 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003393 715 QGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 793 (823)
.|++++|++.|++.++. .| +...|..+..++...|++++ ++.|+++++.+.. +...|..++.+|.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999984 45 46788999999999999999 9999999986443 67889999999999999999999
Q ss_pred HHHHHhhcCCCCCHHHHH
Q 003393 794 FLSKIKERDDSFNDESVK 811 (823)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~ 811 (823)
.++++.+.+|++....+.
T Consensus 556 ~~~~al~l~P~~~~a~~~ 573 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLT 573 (681)
T ss_dssp HHHTSCTTSTTHHHHHHH
T ss_pred HHHhhcccCcccHHHHHH
Confidence 999999999987554433
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=1.6e-08 Score=92.17 Aligned_cols=161 Identities=12% Similarity=-0.012 Sum_probs=118.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHH-HH
Q 003393 635 FNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKG-FC 713 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 713 (823)
+..+...+...|++++|...|+++++..+. +...+..+..+|.+.|++++|+..++++.+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344556677888999999999887765433 67788888888999999999999998887643 344433332222 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 003393 714 RQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEA 791 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 791 (823)
..+...+|+..+++.++. .| +...+..+..++...|++++|+..++++++..+.+ +...+..++.+|...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222334578888888874 45 46778888999999999999999999998865443 356788899999999999999
Q ss_pred HHHHHHHhh
Q 003393 792 MDFLSKIKE 800 (823)
Q Consensus 792 ~~~~~~~~~ 800 (823)
...+++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887753
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=4.6e-08 Score=97.05 Aligned_cols=166 Identities=11% Similarity=-0.040 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHH-HHH
Q 003393 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYN-TVI 709 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 709 (823)
+...+..+...+...|++++|...|+++++..+. +...+..+...|.+.|++++|...++++.+. .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 4456777788888999999999999999987644 7788889999999999999999999998765 44544332 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCh
Q 003393 710 KGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKY 788 (823)
Q Consensus 710 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 788 (823)
..+...++.++|+..|++.++.. +.+...+..+..++...|++++|+..++++++..+.. +...+..|+..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34667788888999999998852 3357788999999999999999999999999865442 267789999999999999
Q ss_pred HHHHHHHHHHhh
Q 003393 789 KEAMDFLSKIKE 800 (823)
Q Consensus 789 ~~A~~~~~~~~~ 800 (823)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887753
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.86 E-value=3e-06 Score=90.57 Aligned_cols=205 Identities=9% Similarity=-0.029 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 003393 543 WKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQE 622 (823)
Q Consensus 543 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 622 (823)
.+.+..+|+++.... +-+...|...+.-+...|+.+.|..+++..... + .+..+....+.. .+.+ + +++.
T Consensus 195 ~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~-~e~~---~---~~~~ 264 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLV-MDEE---A---VYGD 264 (493)
T ss_dssp HHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHH-TTCT---H---HHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhh-cchh---H---HHHH
Confidence 345677888877753 446778888888888999999999999998776 2 232222221111 1111 1 1222
Q ss_pred HHHCC---------C---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHH
Q 003393 623 LQKHG---------Y---KPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG-KCWKAEEI 689 (823)
Q Consensus 623 ~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~ 689 (823)
+.+.- . .....+|...+..+.+.++.+.|..+|+.+ +. ...+...|......-...+ +.+.|..+
T Consensus 265 l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 21110 0 001235556666666677788888888888 32 1223444433333322333 68888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 690 LKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
|+...+.. .-+...|...++...+.|+.+.|..+|+.+. -....|...+..-...|+.+.+.++++++.+
T Consensus 343 fe~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88887652 2234455666777777888888888888862 1356677777666677888888887777763
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=8.4e-08 Score=81.25 Aligned_cols=103 Identities=14% Similarity=0.075 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003393 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGY 782 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 782 (823)
..+...+..|.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.++++++.+.. +...|..++.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 456777888888999999999998888742 235677888888899999999999999999885433 577888899999
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 783 CKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 783 ~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
...|++++|.+.++++++.+|++.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999988743
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=4.1e-07 Score=86.51 Aligned_cols=188 Identities=10% Similarity=0.011 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC--hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCC-H-HHHH
Q 003393 561 SETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFP--SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPD-L-VIFN 636 (823)
Q Consensus 561 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~ 636 (823)
+...+..+...+...|++++|...++.+....+.. ....+..++.+|.+.|++++|...|+++.+..+... . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45566677788999999999999999997654433 245677888999999999999999999988754322 1 2454
Q ss_pred HHHHHHHc------------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 003393 637 SMLSICAK------------------NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGG 698 (823)
Q Consensus 637 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 698 (823)
.+..++.. .|++++|+..|+++++..+. +...+...... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHHH----
Confidence 55555543 57899999999999986533 33333221111 0 0111111
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 003393 699 TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI----FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK 769 (823)
Q Consensus 699 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 769 (823)
.....+...|.+.|++++|+..|+++++. .|+. ..+..+..++.+.|++++|++.++.+...++.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 11234677888999999999999999984 3442 46788899999999999999999998875443
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=1.1e-06 Score=87.67 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=124.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----hhHHHH
Q 003393 638 MLSICAKNSMYDRANEMLHLILESGMQ-PNL----VTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD----LVSYNT 707 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 707 (823)
.+..+...|++++|..+++...+.... ++. ..+..+...|...|++++|+..++++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 456678899999999999998874322 221 13345667777888999999999999874222 22 236889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-HHHHH
Q 003393 708 VIKGFCRQGLMQEAMRMLYEMTNR-----GIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQH----NCKPN-ELTYK 776 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 776 (823)
++..|...|++++|+..|+++++. +..+. ..++..++.+|...|++++|++.++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998841 11222 236788999999999999999999998752 22222 67789
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHhhcC
Q 003393 777 IVVDGYCKARK-YKEAMDFLSKIKERD 802 (823)
Q Consensus 777 ~l~~~~~~~g~-~~~A~~~~~~~~~~~ 802 (823)
.++.+|.+.|+ +++|.+.++++....
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999995 699999999987543
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.80 E-value=2.4e-07 Score=102.27 Aligned_cols=157 Identities=10% Similarity=-0.065 Sum_probs=119.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 003393 645 NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRM 724 (823)
Q Consensus 645 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 724 (823)
.|++++|.+.++++++.... +...+..+...|.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876533 67888999999999999999999999998863 33678889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHhhc
Q 003393 725 LYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA---RKYKEAMDFLSKIKER 801 (823)
Q Consensus 725 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 801 (823)
|++..+.. +-+...+..+..+|...|++++|++.++++++.... +...+..++.+|... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998852 234678889999999999999999999999986433 677888999999999 9999999999999999
Q ss_pred CCCC
Q 003393 802 DDSF 805 (823)
Q Consensus 802 ~~~~ 805 (823)
+|+.
T Consensus 158 ~p~~ 161 (568)
T 2vsy_A 158 GVGA 161 (568)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 8875
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=9e-08 Score=96.16 Aligned_cols=185 Identities=8% Similarity=-0.023 Sum_probs=121.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--C-CC--CHHHHHHHHH
Q 003393 606 VNFKCRALQGMERAFQELQKH----GYKP-DLVIFNSMLSICAKNSMYDRANEMLHLILESG--M-QP--NLVTYNNLMD 675 (823)
Q Consensus 606 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~ 675 (823)
.|...|++++|...|.+..+. +... -..+|+.+...|...|++++|+..|++.++.. . .+ -..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555544322 1000 13467778888889999999999998877531 1 11 1356778888
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 003393 676 MYARAGKCWKAEEILKGILKSGGTP-----DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPC-IFTYNTFVS 745 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~ 745 (823)
+|.. |++++|+..|++..+..... ...+++.+...|...|++++|+..|++.++. +..+. ..++..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 8888 99999999999887531111 1356788889999999999999999988862 11111 235667777
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHHhcCChHHHHH
Q 003393 746 GYAGQGMFTEIDEVIKHMFQHNCKP-N---ELTYKIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~~g~~~~A~~ 793 (823)
++...|++++|+..+++.+ ....- + ......++.+| ..|+.+.+.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888899999999999998 43221 1 12344555555 5677776666
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=1.7e-07 Score=81.90 Aligned_cols=101 Identities=8% Similarity=0.002 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 702 LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 702 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
...+..+...+.+.|++++|+..|+++++. .| +...|..+..+|...|++++|+..|+++++..+. +...|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 346667777888888888888888888874 34 4667788888888888888888888888875433 5677888888
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCC
Q 003393 781 GYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 781 ~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+|.+.|++++|.+.++++.+..|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 8888888888888888888888763
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.75 E-value=8.7e-08 Score=87.14 Aligned_cols=160 Identities=10% Similarity=0.011 Sum_probs=121.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHc
Q 003393 602 TLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDM-YARA 680 (823)
Q Consensus 602 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 680 (823)
.....+...|++++|...|++..+..+. +...+..+...+...|++++|+..++.+.+... +...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 4455667788888888888877665322 677888999999999999999999999877543 44433332222 2233
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHH
Q 003393 681 GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEV 759 (823)
Q Consensus 681 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 759 (823)
++..+|+..+++..+.. +.+...+..+..++...|++++|+..|+++++..-.+ +...+..+..++...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 34456789999988763 3367889999999999999999999999999853222 356888999999999999999999
Q ss_pred HHHHHh
Q 003393 760 IKHMFQ 765 (823)
Q Consensus 760 ~~~~~~ 765 (823)
|++.+.
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=5.1e-08 Score=85.46 Aligned_cols=105 Identities=8% Similarity=-0.085 Sum_probs=79.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 701 DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 701 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
+...+..+...+...|++++|+..|++.++.+ +.+...|..+..+|...|++++|+..++++++..+. +...+..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34556667778888888888888888887742 225667777888888888888888888888875432 5677778888
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 781 GYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 781 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
+|...|++++|.+.++++.+..|++++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 888888888888888888887776543
No 120
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=1.9e-07 Score=83.75 Aligned_cols=117 Identities=10% Similarity=0.009 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003393 702 LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDG 781 (823)
Q Consensus 702 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 781 (823)
...|..+...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++++.... +...|..++.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3456666677777777777777777777631 224566677777777777777777777777764332 46677777777
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 003393 782 YCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREI 820 (823)
Q Consensus 782 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 820 (823)
|...|++++|.+.++++.+.+|++....+...+..+++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 777777777777777777777777665444444444433
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.71 E-value=2.4e-07 Score=91.79 Aligned_cols=148 Identities=8% Similarity=-0.064 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-
Q 003393 664 QPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNT- 742 (823)
Q Consensus 664 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 742 (823)
+.+...+..+...+.+.|++++|...|+++.+.. +-+...+..+...+...|++++|...++++.+. .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3456677788889999999999999999999864 336788999999999999999999999998774 466544333
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH-HHHHHHHH
Q 003393 743 FVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND-ESVKRLTF 815 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~ 815 (823)
....+...++.++|+..++++++..+. +...+..++..|...|++++|.+.+.++...+|++.+ ..+..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 333466778889999999999986543 6888999999999999999999999999999998743 33443333
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=1.4e-06 Score=81.76 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=86.7
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 003393 336 ALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAG----KVNKALRLLN 411 (823)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 411 (823)
|++.|++..+.| +..++..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444455554443 44555555555555555555555555555543 34444445545444 4 5566666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCC-CChhHHHHHHHHHHc----cCCHHHHHHHHHH
Q 003393 412 KMKESGCAPNVCTYNAVLGMLGK----KGRSEEMMKILCDMKSSGCS-PNRITWNTMLTMCGN----KGLDKYVNQVFRE 482 (823)
Q Consensus 412 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 482 (823)
+..+.| +...+..|...|.. .++.++|++.|++..+.|.. .+...+..|...|.. .++.++|..+|+.
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555443 34445555555544 55556666666555554321 013444444444444 4455555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 003393 483 MKSCGFEPDRDTFNTLISAYGRC-G-----SGVDATKMFEDMMKTG 522 (823)
Q Consensus 483 ~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~~ 522 (823)
..+. ..+...+..|...|... | +.++|.+.|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5543 11223344444444332 1 4555555555555443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=2.3e-07 Score=84.43 Aligned_cols=126 Identities=6% Similarity=0.073 Sum_probs=85.3
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 003393 679 RAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSG-YAGQGMF--TE 755 (823)
Q Consensus 679 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 755 (823)
..|++++|...+++..+.. +.+...|..+...|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566777777777776653 3355677777777777777777777777777632 2245566666766 6677777 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 756 IDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 756 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
|+..++++++.... +...+..++.+|...|++++|...++++.+..|++..
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 88888888775332 5667777888888888888888888888888777643
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=3.1e-07 Score=87.92 Aligned_cols=197 Identities=9% Similarity=-0.056 Sum_probs=145.3
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCChHHHHHHHHHHHHcCCCCC---------------
Q 003393 609 KCRALQGMERAFQELQKHGYKPDLVIFNSM-------LSICAKNSMYDRANEMLHLILESGMQPN--------------- 666 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 666 (823)
..++...|.+.|.++....+. ....|..+ ...+...++..+++..+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 467888899999998887543 56688777 4556565556666666555544 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--H
Q 003393 667 -------LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC--I 737 (823)
Q Consensus 667 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~ 737 (823)
......+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345667788999999999999988764 3444366667778999999999999998665421 111 3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003393 738 FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRL 813 (823)
Q Consensus 738 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 813 (823)
..+..+..++...|++++|+..|++.......|. ......++.++.+.|+.++|...++++...+|+ ...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 4678889999999999999999999986433253 446778889999999999999999999999998 5554443
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=1.6e-06 Score=81.57 Aligned_cols=123 Identities=15% Similarity=0.044 Sum_probs=59.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003393 602 TLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG 681 (823)
Q Consensus 602 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 681 (823)
.+...+...|++++|...|++.. .++..++..+...|...|++++|++.++++++... .+...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence 33444445555555555554442 23444555555555555555555555555554432 13444555555555555
Q ss_pred CHhHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 682 KCWKAEEILKGILKSGGTPDL----------------VSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 682 ~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
++++|+..|++..+.... +. ..+..+..+|.+.|++++|.+.|++..+
T Consensus 86 ~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555443211 11 3444455555555555555555555544
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=1.3e-05 Score=78.79 Aligned_cols=217 Identities=12% Similarity=0.022 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhHHHHHHHHH----HHc---CCHH
Q 003393 299 NEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAG--VYSEALSILKEMEDNNCPPDSVTYNEVVGAY----VRA---GFYE 369 (823)
Q Consensus 299 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 369 (823)
++|++.++.++... +-+..+|+.--..+...+ +++++++.++.+.... +-+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666665542 112345555555555555 6666666666666543 22344444433333 333 5666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC------HHHH
Q 003393 370 EGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVN--KALRLLNKMKESGCAPNVCTYNAVLGMLGKKGR------SEEM 441 (823)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~a 441 (823)
+++.+++++.+...+ |-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. ++++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666666665443 5666666555555666665 666666666665433 55555555555555444 5555
Q ss_pred HHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003393 442 MKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKY-VNQVFREMKSCG--FEPDRDTFNTLISAYGRCGSGVDATKMFEDM 518 (823)
Q Consensus 442 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 518 (823)
++.++.++..... |...|+.+-..+.+.|+... +..+...+.+.+ -..+...+..+...|.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5555555544222 44555555444444444222 223333332211 0223344444455555555555555555554
Q ss_pred Hh
Q 003393 519 MK 520 (823)
Q Consensus 519 ~~ 520 (823)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.63 E-value=1.1e-06 Score=78.78 Aligned_cols=129 Identities=9% Similarity=0.052 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003393 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYA 748 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 748 (823)
.+..+...+...|++++|...|++..+.. +.+..++..++.++...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44555566666666666666666666542 2245666666666777777777777777766631 223556666677777
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 003393 749 GQGMFTEIDEVIKHMFQHNCKPNELTY--KIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 749 ~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
..|++++|++.++++++.... +...+ ..++..+.+.|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777777664332 33344 3333336667777777777766543
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=1e-06 Score=74.55 Aligned_cols=108 Identities=13% Similarity=0.047 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003393 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSG 746 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 746 (823)
..+...+..|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|+..|++.++. .| +...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence 345566666777777777777777776653 235566777777777777777777777777763 33 35567777777
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003393 747 YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
+...|++++|++.|+++++..+. +...+..|.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS-NEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHH
Confidence 77777777777777777764322 344444443
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.63 E-value=4.9e-06 Score=82.83 Aligned_cols=164 Identities=13% Similarity=0.078 Sum_probs=123.8
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 003393 602 TLILVNFKCRALQGMERAFQELQKHGYK-PDL----VIFNSMLSICAKNSMYDRANEMLHLILESGMQ-PN----LVTYN 671 (823)
Q Consensus 602 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~ 671 (823)
..+..+...|++++|...+++..+.... ++. ..+..+...+...+++++|+..++++++.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3456677888899999999988764322 221 13334666777788999999999999984322 22 23689
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHc-----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 003393 672 NLMDMYARAGKCWKAEEILKGILKS-----GGTPD-LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPC-IFTY 740 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~ 740 (823)
.++.+|...|++++|...|+++.+. +..+. ..++..++..|.+.|++++|+..+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999998841 11111 247888999999999999999999988752 22222 5678
Q ss_pred HHHHHHHHcCCC-hhHHHHHHHHHHh
Q 003393 741 NTFVSGYAGQGM-FTEIDEVIKHMFQ 765 (823)
Q Consensus 741 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 765 (823)
..+..+|.+.|+ +++|++.+++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999999874
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=4.3e-07 Score=78.99 Aligned_cols=102 Identities=4% Similarity=-0.111 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003393 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGY 782 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 782 (823)
..+..+...+...|++++|+..|++.++.+ +-+...|..+..+|...|++++|+..++++++..+. +...+..++.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 445566677778888888888888877742 224666777788888888888888888888875433 566777888888
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCC
Q 003393 783 CKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 783 ~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
...|++++|.+.++++.+..|+++
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 888888888888888888777654
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=4.5e-07 Score=84.66 Aligned_cols=158 Identities=11% Similarity=0.005 Sum_probs=84.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCCH
Q 003393 644 KNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKS----GGT-PDLVSYNTVIKGFCRQGLM 718 (823)
Q Consensus 644 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 718 (823)
..|++++|.++++.+.. .......++..+...|...|++++|...+++..+. +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34556666664333322 11123455556666666666666666666665531 111 1224455566666666666
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHhcCC
Q 003393 719 QEAMRMLYEMTNR----GIRP--CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN--C-KPN--ELTYKIVVDGYCKARK 787 (823)
Q Consensus 719 ~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~ 787 (823)
++|...+++..+. +..+ ....+..+..++...|++++|+..+++.++.. . .+. ..++..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665542 1011 12345566666666777777777766665310 0 111 2334666677777777
Q ss_pred hHHHHHHHHHHhhcC
Q 003393 788 YKEAMDFLSKIKERD 802 (823)
Q Consensus 788 ~~~A~~~~~~~~~~~ 802 (823)
+++|.+.++++.+..
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666544
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.3e-06 Score=74.09 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003393 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGY 782 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 782 (823)
..|..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..++++++.... +...|..++.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 456667777888888888888888887742 224677788888888888888888888888875433 577788888888
Q ss_pred HhcCChHHHHHHHHHHhhcC
Q 003393 783 CKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 783 ~~~g~~~~A~~~~~~~~~~~ 802 (823)
...|++++|.+.++++.+.+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888888888888
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.58 E-value=2.1e-05 Score=77.97 Aligned_cols=197 Identities=12% Similarity=0.086 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh-----
Q 003393 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKN-S-MYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCW----- 684 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----- 684 (823)
.++++...++.+....++ +..+|+.-...+.+. + ++++++++++.+++...+ +..+|+.-..++.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchh
Confidence 467777888888877554 777888777777666 6 889999999999987654 7788877777777766666
Q ss_pred ---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh-
Q 003393 685 ---KAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL-------MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMF- 753 (823)
Q Consensus 685 ---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~- 753 (823)
++++.++++++.... |..+|+.....+.+.++ ++++++.+++++... +-|...|+.+-..+.+.|+-
T Consensus 182 ~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCc
Confidence 899999999987543 78889988888887776 789999999998842 23566777777777666653
Q ss_pred -------------------hHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHH
Q 003393 754 -------------------TEIDEVIKHMFQHN----C-KPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDES 809 (823)
Q Consensus 754 -------------------~~A~~~~~~~~~~~----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 809 (823)
.+..+....+...+ . .+....+..|++.|...|+.++|.++++.+.+.....-..-
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~y 339 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGY 339 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHH
Confidence 33334444443321 1 23677889999999999999999999999975443333444
Q ss_pred HHH
Q 003393 810 VKR 812 (823)
Q Consensus 810 ~~~ 812 (823)
|+-
T Consensus 340 w~~ 342 (349)
T 3q7a_A 340 WEF 342 (349)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=1.6e-06 Score=74.71 Aligned_cols=102 Identities=9% Similarity=-0.033 Sum_probs=74.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 701 DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 701 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
+...|..+...+...|++++|+..|++.++.. +-+...|..+..++...|++++|+..++++++.... +...|..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45667777777777788888888877777642 224566777777788888888888888888775433 5667777888
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCC
Q 003393 781 GYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 781 ~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+|...|++++|.+.++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888777665
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.54 E-value=3e-06 Score=71.40 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC 783 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 783 (823)
.+..++..+...|++++|.+.++++.+.. +.+..++..++.++...|++++|+..++++.+.... +...+..++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 34444444444455555555554444421 112334444444555555555555555555443211 3444445555555
Q ss_pred hcCChHHHHHHHHHHhhcCCCC
Q 003393 784 KARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 784 ~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
..|++++|.++++++.+..|++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCc
Confidence 5555555555555555555443
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=1.2e-06 Score=74.35 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC--CC----HHHH
Q 003393 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK--PN----ELTY 775 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~ 775 (823)
.++..++..+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.++++++.... .+ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45666777888888888888888888773 344 566777888888888888888888888763211 11 2467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 776 KIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
..++.+|...|++++|++.++++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 77888888999999999999999887775
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=5.1e-07 Score=89.08 Aligned_cols=194 Identities=11% Similarity=-0.043 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003393 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
..+..++..+...|++++|...|++..+.... +...|..+...|.+.|++++|+..++.+++.... +...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34455666777788888888888888776433 6778888999999999999999999999886543 677888899999
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 003393 678 ARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 757 (823)
...|++++|...|++..+.... +...+...+....+ ..++.. +..........+......+...+ .|++++|+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999988764211 11111111221111 111222 22233333444555544443322 68889999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhc-CChHHHHHHHHHHhhcC
Q 003393 758 EVIKHMFQHNCKPN-ELTYKIVVDGYCKA-RKYKEAMDFLSKIKERD 802 (823)
Q Consensus 758 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 802 (823)
+.++++++. .|+ ......+...+.+. +++++|.+++.++.+..
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999888874 444 44445555556665 67888999998887643
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=3e-06 Score=71.41 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
+...+..+...+...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 35778889999999999999999999998763 3467888999999999999999999999999852 345778899999
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003393 746 GYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKAR 786 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 786 (823)
++...|++++|...++++.+.... +...+..+..++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhcc
Confidence 999999999999999999985433 5666777777766544
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=2.8e-06 Score=72.36 Aligned_cols=117 Identities=9% Similarity=-0.010 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003393 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
..+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|+..+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444555555555555555555555432 2234445555555555555555555555555431 12244455555555
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003393 748 AGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 748 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
...|++++|.+.++++.+.... +...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 5555555555555555553221 34445555555555444
No 140
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=0.00019 Score=70.85 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHH
Q 003393 613 LQGMERAFQELQKHGYKPDLVIFNSMLSICAKNS--MYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGK-CWKAEEI 689 (823)
Q Consensus 613 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 689 (823)
++++..+++.+...+++ +..+|+.-...+.+.+ .+++++++++.+++...+ |..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67788888888887554 7888988888887777 489999999999998765 88888888888888898 5899999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC----
Q 003393 690 LKGILKSGGTPDLVSYNTVIKGFCRQ--------------GLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQ---- 750 (823)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~---- 750 (823)
++++++..+. |..+|+.....+... +.++++++.+.+.+.. .| |...|+-+-..+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcc
Confidence 9999987543 778888877776655 4588999999999984 44 466676665555554
Q ss_pred -------CChhHHHHHHHHHHhCCCCCC-HHHHHHHHH---HHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003393 751 -------GMFTEIDEVIKHMFQHNCKPN-ELTYKIVVD---GYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFR 816 (823)
Q Consensus 751 -------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 816 (823)
+.++++++.++++++. .|| ...+..++. +....|..++...++.++.+.+|.- ..-|..+...
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r-~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch-hhHHHHHHHH
Confidence 4578999999999984 454 333333332 2224688889999999999999975 4445544443
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=1.6e-06 Score=88.03 Aligned_cols=131 Identities=10% Similarity=-0.045 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003393 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD--------------LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG 732 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 732 (823)
...+..+...|.+.|++++|+..|++.++...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555556666666666666666666655422111 3667777777777777777777777777742
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHh
Q 003393 733 IRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEA-MDFLSKIK 799 (823)
Q Consensus 733 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 799 (823)
+-+...|..+..+|...|++++|+..|+++++..+. +...+..+..++.+.|+.++| ...+++|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224566777777777777788888777777774332 566777777777777777777 34555554
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=2.1e-06 Score=74.86 Aligned_cols=97 Identities=8% Similarity=-0.092 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003393 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVS 745 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 745 (823)
...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++.++. .| +...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 3455666667777777777777777777653 235666777777777777777777777777763 33 3566677777
Q ss_pred HHHcCCChhHHHHHHHHHHhC
Q 003393 746 GYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~ 766 (823)
+|...|++++|++.|+++++.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777764
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=3.6e-06 Score=83.74 Aligned_cols=163 Identities=13% Similarity=0.044 Sum_probs=119.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CC--HHHHHH
Q 003393 603 LILVNFKCRALQGMERAFQELQKHGYKPD-----LVIFNSMLSICAKNSMYDRANEMLHLILESGMQ---PN--LVTYNN 672 (823)
Q Consensus 603 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~--~~~~~~ 672 (823)
.+..+...|++++|...+++..+...... ...+..+...+...|++++|+..++++.+.... +. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 44556667777777777777666532211 122344556677889999999999998864221 11 457889
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHc-CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 003393 673 LMDMYARAGKCWKAEEILKGILKS-GGTPD-----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPC-IFTYN 741 (823)
Q Consensus 673 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~ 741 (823)
+...|...|++++|...|+++.+. ...++ ..+++.++..|...|++++|+..+++.++. +.... ..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999999999998731 01112 257888999999999999999999998763 11111 56788
Q ss_pred HHHHHHHcCCChhHH-HHHHHHHHh
Q 003393 742 TFVSGYAGQGMFTEI-DEVIKHMFQ 765 (823)
Q Consensus 742 ~l~~~~~~~g~~~~A-~~~~~~~~~ 765 (823)
.+..+|...|++++| ...++++..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 999999999999999 777888764
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.52 E-value=2.1e-06 Score=73.44 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCK 784 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 784 (823)
|..++..+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.++++++.... +...+..++.+|.+
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 3333344444444444444444443320 112333344444444444444444444444432211 23334444444444
Q ss_pred cCChHHHHHHHHHHhhcCCC
Q 003393 785 ARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 785 ~g~~~~A~~~~~~~~~~~~~ 804 (823)
.|++++|.++++++.+..|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGG
T ss_pred HhhHHHHHHHHHHHHHhCCC
Confidence 44444444444444444443
No 145
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=1e-06 Score=75.81 Aligned_cols=101 Identities=13% Similarity=-0.009 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHcCCChhHHHHHHHHHHhC-----
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-------------IFTYNTFVSGYAGQGMFTEIDEVIKHMFQH----- 766 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 766 (823)
+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555566667777777777766662 232 237888888888899999999988888874
Q ss_pred CCCC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 767 NCKP-NELTY----KIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 767 ~~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
.+.| +...| ...+.+|...|++++|+..++++++..|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 1155 46678 89999999999999999999999998887643
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=3.9e-06 Score=75.12 Aligned_cols=130 Identities=13% Similarity=-0.014 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003393 633 VIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGF 712 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 712 (823)
..+..+...+...|++++|...|+.+++.... +...+..+..+|...|++++|...+++..+.. +.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45666777788899999999999998886533 67888888999999999999999999988763 33667888888999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 713 CRQGLMQEAMRMLYEMTNRGIRPCIFTY--NTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
...|++++|...|+++.+.. +-+...+ ..++..+...|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999988842 2234444 3344447778899999998887653
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=2.2e-06 Score=73.27 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003393 665 PNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFV 744 (823)
Q Consensus 665 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 744 (823)
.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 356788899999999999999999999998763 3367889999999999999999999999999852 33577889999
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003393 745 SGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
.++...|++++|++.++++++.... +...+..+..++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 9999999999999999999985332 46677888888877664
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=9.1e-07 Score=74.19 Aligned_cols=100 Identities=8% Similarity=-0.059 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGY 782 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 782 (823)
.+..+...+.+.|++++|+..|++.++. .| +...|..+..++...|++++|+..++++++..+. +...+..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3556677888899999999999998884 34 5677888888999999999999999999885433 677888999999
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCC
Q 003393 783 CKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 783 ~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
...|++++|.+.++++.+.+|++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC------
T ss_pred HHcCCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999888764
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=3e-07 Score=85.51 Aligned_cols=157 Identities=7% Similarity=-0.058 Sum_probs=98.8
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----------------hhHHH
Q 003393 643 AKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD----------------LVSYN 706 (823)
Q Consensus 643 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~ 706 (823)
...|+++++.+.++...+... .....+..+...+.+.|++++|+..|++..+.... + ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHH
Confidence 344555555555543322111 13445666777788888888888888888764221 2 26777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003393 707 TVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKAR 786 (823)
Q Consensus 707 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 786 (823)
.+..+|...|++++|+..+++.++.. +.+...+..+..+|...|++++|++.++++++.... +...+..+..++...|
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 88888888999999999999888742 234677888888889999999999999998875432 5777888888888888
Q ss_pred ChHHHH-HHHHHHhhcCC
Q 003393 787 KYKEAM-DFLSKIKERDD 803 (823)
Q Consensus 787 ~~~~A~-~~~~~~~~~~~ 803 (823)
+.+++. ..++.+.....
T Consensus 171 ~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 171 EARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp HHHC--------------
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 887777 55566654443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1e-06 Score=80.08 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=85.7
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCCH--H
Q 003393 643 AKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKG-FCRQGLM--Q 719 (823)
Q Consensus 643 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 719 (823)
...|++++|+..++..++... .+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 346777778888887777653 266777788888888888888888888877653 2356667777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 003393 720 EAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 720 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
+|+..|+++++.. +-+...+..+..+|...|++++|+..++++++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888887742 2235667777888888888888888888888743
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.45 E-value=1.5e-06 Score=81.03 Aligned_cols=156 Identities=10% Similarity=-0.057 Sum_probs=113.3
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCH
Q 003393 609 KCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILES----GMQ-PNLVTYNNLMDMYARAGKC 683 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 683 (823)
..|++++|.+.++.+.. .......++..+...|...|++++|...+++.++. +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777775554433 22234568888888999999999999999988762 111 1345678888899999999
Q ss_pred hHHHHHHHHHHHc----CCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC--HHHHHHHHHHHHcCCC
Q 003393 684 WKAEEILKGILKS----GGTP--DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR---GIRPC--IFTYNTFVSGYAGQGM 752 (823)
Q Consensus 684 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~--~~~~~~l~~~~~~~g~ 752 (823)
++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+. .-.+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999988753 1111 2356778889999999999999999988752 11111 2346788889999999
Q ss_pred hhHHHHHHHHHHh
Q 003393 753 FTEIDEVIKHMFQ 765 (823)
Q Consensus 753 ~~~A~~~~~~~~~ 765 (823)
+++|.+.+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=3.5e-06 Score=70.09 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003393 702 LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDG 781 (823)
Q Consensus 702 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 781 (823)
...+..++..+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++++.... +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3456666777777788888888887777642 224666777777777888888888888888765332 56677778888
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 782 YCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 782 ~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
|...|++++|.++++++.+..|++.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 8888888888888888888877653
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=3.9e-06 Score=73.35 Aligned_cols=103 Identities=5% Similarity=-0.047 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 003393 701 DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYK 776 (823)
Q Consensus 701 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 776 (823)
+...+..+...+...|++++|+..|++..+ ..|+ ...+..+..+|...|++++|++.++++++.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 456677777888888888888888888876 3455 566777888888888888888888888875332 577788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 777 IVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 777 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.++.+|...|++++|.++++++.+..|++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 888888888899999999888888888753
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=3e-06 Score=71.71 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 003393 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG--IRPC----IFTYNT 742 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 742 (823)
.+..++..|.+.|++++|+..|++.++.. +.+...|+.+..+|...|++++|++.+++.++.+ ...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666666666666666666542 2245566666666666666666666666665421 1111 134566
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 003393 743 FVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+..++...|++++|++.|++.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 66677777777777777777765
No 155
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.42 E-value=1.7e-06 Score=75.56 Aligned_cols=98 Identities=9% Similarity=-0.124 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003393 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFV 744 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~ 744 (823)
+...+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++.++. .| +...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 44566677777888888888888888887753 336677778888888888888888888888774 33 456777788
Q ss_pred HHHHcCCChhHHHHHHHHHHhC
Q 003393 745 SGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
.+|...|++++|++.++++++.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888764
No 156
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=7.3e-05 Score=74.17 Aligned_cols=171 Identities=11% Similarity=0.019 Sum_probs=90.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc-C-CHHH
Q 003393 294 REGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAG-VYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRA-G-FYEE 370 (823)
Q Consensus 294 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 370 (823)
+.+..++|+++++.++... +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3444456666666666652 123445555555555555 3666666666666553 33555565555555444 5 6666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC-----
Q 003393 371 GAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVN--------KALRLLNKMKESGCAPNVCTYNAVLGMLGKKGR----- 437 (823)
Q Consensus 371 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 437 (823)
++++++++.+...+ |-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 66666666665443 5555555444444444444 566666666554332 55555555555555544
Q ss_pred --HHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 003393 438 --SEEMMKILCDMKSSGCSPNRITWNTMLTMCGN 469 (823)
Q Consensus 438 --~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 469 (823)
++++++.+++++..... |...|+.+-..+.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 45555555555443211 44444444333333
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=3.5e-06 Score=69.36 Aligned_cols=105 Identities=10% Similarity=-0.078 Sum_probs=79.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 003393 701 DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK-PNELTYKIVV 779 (823)
Q Consensus 701 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~ 779 (823)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.++++++.... .+...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34566677778888888888888888887742 234667778888888888888888888888875322 0467788888
Q ss_pred HHHHhc-CChHHHHHHHHHHhhcCCCCC
Q 003393 780 DGYCKA-RKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 780 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.+|.+. |++++|.++++++....|..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888888888888888887653
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=2.4e-06 Score=76.23 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------C---------CCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNR-------G---------IRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~---------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
+...+..+.+.|++++|+..|++.++. + ..| +...|..+..+|.+.|++++|+..++++++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444445555555555555555555442 0 012 23567888888999999999999999998854
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003393 768 CKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 768 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
+. +...|..++.+|...|++++|...++++++.+|++...
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 33 67888899999999999999999999999999887533
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=6.6e-06 Score=69.94 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=91.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 701 DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 701 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
+...+..++..+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.++++++.... +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 34667788899999999999999999998852 335778899999999999999999999999985433 5788999999
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 781 GYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 781 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
+|...|++++|.++++++.+..|++..
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 999999999999999999999987643
No 160
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.41 E-value=4.8e-06 Score=70.80 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=70.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHH
Q 003393 706 NTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-I---FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN---ELTYKIV 778 (823)
Q Consensus 706 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 778 (823)
..+...+...|++++|...|+++.+. .|+ . ..+..+..++...|++++|+..++++++.... + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 34556677778888888888877763 233 2 46667777788888888888888888774332 2 5567778
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 779 VDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 779 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
+.+|...|++++|.++++++.+..|+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 8888888888888888888888877643
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=4.8e-05 Score=75.17 Aligned_cols=187 Identities=6% Similarity=0.018 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--
Q 003393 614 QGMERAFQELQKHGYKPDLVIFNSMLSICAKNSM----------YDRANEMLHLILESGMQPNLVTYNNLMDMYARAG-- 681 (823)
Q Consensus 614 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 681 (823)
++|...++.+...++. +..+|+.--..+...+. +++++.+++.++...++ +..+|+.-..++.+.|
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcc
Confidence 4677777777776433 44566644333333332 68899999999987655 8888988888888888
Q ss_pred CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----------
Q 003393 682 KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL-MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ---------- 750 (823)
Q Consensus 682 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------- 750 (823)
++++++.+++++.+... .|..+|+.-..++...|. ++++++.++++++.+. -|...|+....++...
T Consensus 125 ~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcccccccc
Confidence 48999999999998753 488899988888888888 6999999999999643 3677787766665544
Q ss_pred ----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhcCCCC
Q 003393 751 ----GMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA-----------RKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 751 ----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~ 805 (823)
+.++++++.+++++...+. |...|.-+-..+.+. +.++++++.++++.+..|++
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 4588999999999985544 777887666666665 46899999999999999987
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.36 E-value=8.9e-06 Score=82.48 Aligned_cols=132 Identities=11% Similarity=-0.035 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 003393 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPN--------------LVTYNNLMDMYARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 696 (823)
+...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677788888889999999999999888654321 478889999999999999999999999986
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHH-HHHHHHHHh
Q 003393 697 GGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEI-DEVIKHMFQ 765 (823)
Q Consensus 697 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 765 (823)
. +.+...|..+..+|...|++++|+..|+++++. .| +...+..+..++...|++++| ...+++|..
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 336788899999999999999999999999884 44 466788888899999999888 456777753
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=7.6e-06 Score=69.59 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC--CC----HHHHHH
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK--PN----ELTYKI 777 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 777 (823)
.+..++..+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++++.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555556666666666666666665531 223455566666666666666666666666553211 11 455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCC
Q 003393 778 VVDGYCKARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 778 l~~~~~~~g~~~~A~~~~~~~~~~~~ 803 (823)
++.+|...|++++|.++++++.+..|
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 77777777777777777777777665
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.34 E-value=1.3e-05 Score=67.84 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003393 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSG 746 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 746 (823)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++.++. .| +...|..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 345556666667777777777777666643 225566666777777777777777777777663 23 35566667777
Q ss_pred HHcCCChhHHHHHHHHHHhC
Q 003393 747 YAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~~~ 766 (823)
+...|++++|++.++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777777653
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=3.3e-05 Score=75.99 Aligned_cols=165 Identities=8% Similarity=-0.057 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003393 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
+...+..+...+...|++++|+..|+.+++.... +...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567778888999999999999999999987543 78889999999999999999999999998763 336788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003393 711 GFCRQGLMQEAMRMLYEMTNRGIRPCI-FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYK 789 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 789 (823)
+|...|++++|+..|++..+. .|+. ..+...+....+ ..++... ..........+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 999999999999999998873 2221 011111111111 1112222 222222233455555555443 379999
Q ss_pred HHHHHHHHHhhcCCCC
Q 003393 790 EAMDFLSKIKERDDSF 805 (823)
Q Consensus 790 ~A~~~~~~~~~~~~~~ 805 (823)
+|.+.++++.+.+|++
T Consensus 153 ~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 153 RELEECQRNHEGHEDD 168 (281)
T ss_dssp HHHTTTSGGGTTTSCH
T ss_pred HHHHHHHhhhccccch
Confidence 9999999999998865
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=2.7e-06 Score=75.74 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHH
Q 003393 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRP-CIF 738 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~ 738 (823)
++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666555432100 01 135566667777777777777777776542 1111 134
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQH----NCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
++..+..++...|++++|++.+++.++. +..+ ....+..++..|...|++++|.++++++.+...+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888877642 1111 2456778888888999999999999888765443
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.31 E-value=2.6e-05 Score=64.63 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003393 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSG 746 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 746 (823)
...+..+...+...|++++|...|++..+.. +.+...+..++..+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445566666667777777777777766542 2255666666777777777777777777776642 2235566667777
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003393 747 YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
+...|++++|.+.++++.+.+.. +...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 77777777777777777764322 344444333
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=2.2e-06 Score=79.60 Aligned_cols=131 Identities=10% Similarity=-0.071 Sum_probs=95.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--------------HH
Q 003393 674 MDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGI-RPC--------------IF 738 (823)
Q Consensus 674 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~--------------~~ 738 (823)
+......|+++++.+.|+...+.. ......+..+...+...|++++|+..|++.++..- .++ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344455666666666665333210 11345677788899999999999999999998411 110 26
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.|..+..+|...|++++|+..++++++.... +...+..++.+|...|++++|.+.++++.+..|++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 7888999999999999999999999986432 688899999999999999999999999999999874
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=1.4e-05 Score=69.18 Aligned_cols=96 Identities=11% Similarity=-0.120 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003393 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
..+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++.++.+ +-+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344455566666677777777777666543 2255666666667777777777777777766632 22345566666677
Q ss_pred HcCCChhHHHHHHHHHHh
Q 003393 748 AGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 748 ~~~g~~~~A~~~~~~~~~ 765 (823)
...|++++|++.++++++
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777777665
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.23 E-value=9.6e-06 Score=68.92 Aligned_cols=110 Identities=7% Similarity=0.016 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHH
Q 003393 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG--IRPC----IFTYN 741 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~ 741 (823)
..+..+...+...|++++|...|++..+.. +.+...+..++..+...|++++|...++++.+.. ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666666542 2245556666666666666666666666665531 1111 45566
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 742 TFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 742 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
.+..++...|++++|.+.++++.+.. |+...+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 66677777777777777777776632 34444444433
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=1.3e-06 Score=72.84 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003393 715 QGLMQEAMRMLYEMTNRGI-RP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
.|++++|+..|++.++.+. .| +...+..+..+|...|++++|++.++++++..+. +...+..++.+|...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4555666666666655321 12 2344555666666666666666666666654332 4555666666666666666666
Q ss_pred HHHHHHhhcCCCC
Q 003393 793 DFLSKIKERDDSF 805 (823)
Q Consensus 793 ~~~~~~~~~~~~~ 805 (823)
+.++++.+..|++
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 6666666666554
No 172
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=3.2e-05 Score=68.96 Aligned_cols=97 Identities=12% Similarity=-0.008 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003393 632 LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKG 711 (823)
Q Consensus 632 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 711 (823)
...+..+...+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345556666667777777777777777765432 56666777777777777777777777776653 2245666677777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003393 712 FCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 712 ~~~~g~~~~A~~~~~~m~~ 730 (823)
|...|++++|+..|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 7777777777777777766
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=4.2e-05 Score=81.10 Aligned_cols=193 Identities=8% Similarity=0.014 Sum_probs=107.7
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCH---
Q 003393 608 FKCRALQGMERAFQELQKHGYKPD----------------LVIFNSMLSICAKNSMYDRANEMLHLILESGMQ-PNL--- 667 (823)
Q Consensus 608 ~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--- 667 (823)
.+.|++++|.+.|..+.+...... ..++..+...|...|++++|.+.+..+.+.... .+.
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 445556666666666555422111 123556667777777777777777665542111 111
Q ss_pred -HHHHHHHHHHHHcCCHhHHHHHHHHHHH----cCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--CC-
Q 003393 668 -VTYNNLMDMYARAGKCWKAEEILKGILK----SGGTPD-LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR--GIR--PC- 736 (823)
Q Consensus 668 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~--p~- 736 (823)
.+.+.+...+...|+.++|..++++... .+..+. ..++..++..|...|++++|..+++++... +.. +.
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 1223333334455677777777766652 111111 345566777777777777777777766542 111 11
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhC--C-CCC-C--HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003393 737 IFTYNTFVSGYAGQGMFTEIDEVIKHMFQH--N-CKP-N--ELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 737 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
..++..++..|...|++++|..++++.... . ..| . ...+..++..+...|++++|...+.++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 235666677777777777777777766531 1 111 1 23455666666777777777776666654
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=4.8e-05 Score=66.21 Aligned_cols=96 Identities=6% Similarity=-0.085 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003393 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNT 742 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 742 (823)
...+..+...+...|++++|...|++..+. .|+ ...|..+..+|...|++++|+..+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344444445555555555555555555443 223 3445555555555555555555555555531 113444555
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 003393 743 FVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+..++...|++++|++.++++++
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555566666666666666655
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=6.8e-05 Score=64.27 Aligned_cols=98 Identities=6% Similarity=-0.064 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..+++.++.+ +-+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44555566666666666666666666665542 2245556666666666666666666666666532 123455666666
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 003393 746 GYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~ 765 (823)
++...|++++|+..++++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666654
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=2.4e-05 Score=64.16 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHH
Q 003393 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP---CIFTYNT 742 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ 742 (823)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..|++..+. .| +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHH
Confidence 34556667777778888888888888877653 335667777888888888888888888888874 33 4667778
Q ss_pred HHHHHHcC-CChhHHHHHHHHHHhCC
Q 003393 743 FVSGYAGQ-GMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 743 l~~~~~~~-g~~~~A~~~~~~~~~~~ 767 (823)
+..++... |++++|++.++++++..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888887654
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.16 E-value=5.8e-05 Score=72.23 Aligned_cols=189 Identities=13% Similarity=0.022 Sum_probs=122.2
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHH-------HHHHhccCChHHHHHHHhhccc------------CCCC-
Q 003393 149 VSGYRERALLLFEWLAVNSSFENGKLDKEVIQLM-------VRILGKESRHSIASKLLDLIPL------------EKYS- 208 (823)
Q Consensus 149 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~------------~~~~- 208 (823)
..++...|.+.|..+....+ -....|..+ ...+.+.++...+...+..... .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-----~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-----SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhCh-----hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 57899999999999998754 367788766 4566655555555555544332 1110
Q ss_pred -------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCC-
Q 003393 209 -------LDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEF- 280 (823)
Q Consensus 209 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~- 280 (823)
--...+......+...|++++|.++|+.+... .|+......+-..+.+.++ |++|+..|+...... .+
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAER-WTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTC-HHHHHHHHTTGGGCS-CHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCC-HHHHHHHHHHhhccC-Ccc
Confidence 01245556777888999999999999988764 3444344444445556565 788888887544321 11
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003393 281 -DEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPG--TVTYNSLLQVFGKAGVYSEALSILKEMEDN 346 (823)
Q Consensus 281 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 346 (823)
....+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 123566677777788888888888887764322143 224555666777777888888877777765
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2e-05 Score=83.61 Aligned_cols=97 Identities=8% Similarity=-0.026 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003393 702 LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDG 781 (823)
Q Consensus 702 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 781 (823)
..+|..+..+|.+.|++++|+..|+++++.. +-+...|..+..+|...|++++|+..|+++++.... +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3566677777777777777777777777632 224566777777777777777777777777764322 45566777777
Q ss_pred HHhcCChHHHH-HHHHHHhh
Q 003393 782 YCKARKYKEAM-DFLSKIKE 800 (823)
Q Consensus 782 ~~~~g~~~~A~-~~~~~~~~ 800 (823)
+.+.|+.++|. ..+++|..
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77777776665 34454443
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=5.6e-06 Score=88.34 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=79.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003393 639 LSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLM 718 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 718 (823)
...+.+.|++++|++.|+++++.... +...|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456777888888888887776433 56777777788888888888888888877753 23556777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HHcCCChhHHHHHHHH
Q 003393 719 QEAMRMLYEMTNRGIRPC-IFTYNTFVSG--YAGQGMFTEIDEVIKH 762 (823)
Q Consensus 719 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~~ 762 (823)
++|++.|++.++. .|+ ...+..+..+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888888877763 232 3344444444 6677777777777763
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.13 E-value=0.00011 Score=79.79 Aligned_cols=162 Identities=7% Similarity=-0.026 Sum_probs=131.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003393 645 NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGK----------CWKAEEILKGILKSGGTPDLVSYNTVIKGFCR 714 (823)
Q Consensus 645 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 714 (823)
....++|++.++.+++..+. +..+|+.-..++.+.|+ ++++++.++++.+... .+..+|+.-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 34457889999999987654 66777777777777777 8999999999998753 377889999999999
Q ss_pred cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc------
Q 003393 715 QG--LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG-MFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA------ 785 (823)
Q Consensus 715 ~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 785 (823)
.| +++++++.++++.+.. .-|..+|+.-..++.+.| .++++++.++++++..+. |...|......+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 99 7799999999999963 236788888888888888 899999999999986655 788888877777663
Q ss_pred --------CChHHHHHHHHHHhhcCCCCCHHHHH
Q 003393 786 --------RKYKEAMDFLSKIKERDDSFNDESVK 811 (823)
Q Consensus 786 --------g~~~~A~~~~~~~~~~~~~~~~~~~~ 811 (823)
+++++|.++++++...+|++. ..|.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~-saW~ 230 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQ-SAWF 230 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCS-HHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCc-cHHH
Confidence 568999999999999999974 4443
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.00036 Score=73.79 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=52.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc--CCC--C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCC-C-C--h
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILES--GMQ--P-NLVTYNNLMDMYARAGKCWKAEEILKGILKS--GGT-P-D--L 702 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~-~--~ 702 (823)
++..+...|...|++++|..+++++... +.. + ...++..++..|...|++++|..++++.... ... + . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4555666666666666666666665432 111 1 1235556666666666666666666665421 011 1 1 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
..+..++..+...|++++|...|.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344555555666666666666655543
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.10 E-value=6.5e-06 Score=83.50 Aligned_cols=154 Identities=8% Similarity=-0.069 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003393 632 LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKG 711 (823)
Q Consensus 632 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 711 (823)
...+..+...+.+.|++++|+..|+++++.. |+... +...|+..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4567777778888899999999998888753 33321 222333333332221 2367888999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChH
Q 003393 712 FCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDG-YCKARKYK 789 (823)
Q Consensus 712 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~ 789 (823)
|.+.|++++|+..+++.++. .| +...|..+..+|...|++++|+..|+++++.... +...+..|..+ ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 34 5778899999999999999999999999874322 45566666666 34567788
Q ss_pred HHHHHHHHHhhcCCCCCH
Q 003393 790 EAMDFLSKIKERDDSFND 807 (823)
Q Consensus 790 ~A~~~~~~~~~~~~~~~~ 807 (823)
++.+.++++....|+++.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 899999999999888654
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=2.8e-05 Score=64.98 Aligned_cols=91 Identities=5% Similarity=-0.089 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC
Q 003393 672 NLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQ 750 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~ 750 (823)
.+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++.++. .| +...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34444555555555555555555432 124445555555555555555555555555552 23 234455555555555
Q ss_pred CChhHHHHHHHHHHh
Q 003393 751 GMFTEIDEVIKHMFQ 765 (823)
Q Consensus 751 g~~~~A~~~~~~~~~ 765 (823)
|++++|+..++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555554
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.06 E-value=0.00011 Score=62.15 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 003393 672 NLMDMYARAGKCWKAEEILKGILKSGGTPDL---VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----IFTYNTFV 744 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~ 744 (823)
.+...+.+.|++++|...|+++.+.... +. ..+..+..++...|++++|+..|+++.+. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 4455566677777777777777654211 22 35666667777777777777777777663 233 44566667
Q ss_pred HHHHcCCChhHHHHHHHHHHhC
Q 003393 745 SGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
.++...|++++|+..++++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777764
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=2.2e-05 Score=69.63 Aligned_cols=133 Identities=14% Similarity=0.038 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC----h
Q 003393 633 VIFNSMLSICAKNSMYDRANEMLHLILESGMQ-PN----LVTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PD----L 702 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~ 702 (823)
.++..+...|...|++++|+..++++++.... .+ ..++..+...|...|++++|...+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35666777777888888888888877653111 11 136777888888999999999999887643101 11 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.++..+...+...|++++|.+.+++..+. +..+. ..++..+..++...|++++|.+.+++.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46777888889999999999999887752 11111 34577788889999999999999998875
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=2.7e-05 Score=83.04 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=97.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003393 603 LILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGK 682 (823)
Q Consensus 603 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 682 (823)
+...+.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|++.++++++.... +...+..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 345678899999999999999887433 6789999999999999999999999999997643 77889999999999999
Q ss_pred HhHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 003393 683 CWKAEEILKGILKSGGTPDLVSYNTVIKG--FCRQGLMQEAMRMLY 726 (823)
Q Consensus 683 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 726 (823)
+++|++.|+++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999988632 244566666666 888899999999988
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00014 Score=78.95 Aligned_cols=174 Identities=7% Similarity=-0.006 Sum_probs=140.4
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003393 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSM----------YDRANEMLHLILESGMQPNLVTYNNLMDMYARAG 681 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 681 (823)
..++|.+.++.+.+.++. +..+|+.-...+...|+ ++++++.++.+++...+ +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 346778888888887544 56778877777766666 89999999999998765 8889988888889999
Q ss_pred --CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------
Q 003393 682 --KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG-LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ-------- 750 (823)
Q Consensus 682 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------- 750 (823)
+++++++.++++.+.... |..+|+....++.+.| .++++++.++++++.+. -|...|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccc
Confidence 779999999999987543 7889999888899999 89999999999988532 3677787777666552
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003393 751 ------GMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKE 790 (823)
Q Consensus 751 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 790 (823)
+.++++++.+++++...+. |...|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5679999999999985443 78889888888888887555
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=5.5e-05 Score=77.47 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 702 LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 702 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
..+|..+..+|.+.|++++|++.+++.++. .| +...|..+..+|...|++++|++.++++++.... +...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345566666666666666666666666653 33 3455666666666666666666666666654322 4555556666
Q ss_pred HHHhcCChHHHH
Q 003393 781 GYCKARKYKEAM 792 (823)
Q Consensus 781 ~~~~~g~~~~A~ 792 (823)
++.+.|+.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555554
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=7.7e-05 Score=76.39 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 737 IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 737 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
..+|..+..+|.+.|++++|++.++++++.... +...|..++.+|...|++++|++.++++.+..|++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 567889999999999999999999999985432 688899999999999999999999999999999864
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=6.3e-05 Score=79.81 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----------------IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
.|..+...|.+.|++++|+..|++.++. .|+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4444555555555555555555555542 122 4678899999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003393 768 CKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 768 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
.. +...|..++.+|...|++++|+..++++++.+|++...
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 43 68889999999999999999999999999999988643
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.91 E-value=0.00014 Score=64.49 Aligned_cols=29 Identities=10% Similarity=-0.063 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003393 633 VIFNSMLSICAKNSMYDRANEMLHLILES 661 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 661 (823)
..+......+.+.|++++|+..|...++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666677777777777777776653
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=2.4e-05 Score=65.01 Aligned_cols=85 Identities=13% Similarity=0.001 Sum_probs=43.2
Q ss_pred cCCHhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 003393 680 AGKCWKAEEILKGILKSGG--TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 757 (823)
.|++++|+..|++.++.+. +.+...+..+..+|...|++++|+..|++.++.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555555555555554320 1123445555556666666666666666655531 112445555555666666666666
Q ss_pred HHHHHHHh
Q 003393 758 EVIKHMFQ 765 (823)
Q Consensus 758 ~~~~~~~~ 765 (823)
..++++++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.90 E-value=0.00019 Score=61.72 Aligned_cols=95 Identities=12% Similarity=-0.004 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCC------C-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC
Q 003393 671 NNLMDMYARAGKCWKAEEILKGILKSGGTP------D-----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR-----GIR 734 (823)
Q Consensus 671 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~ 734 (823)
......+.+.|++++|+..|++.++..... + ...|+.+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344444555566666666666555432110 1 237888888888999999999998888872 126
Q ss_pred CC-HHHH----HHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 735 PC-IFTY----NTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 735 p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
|+ ...| .....++...|++++|+..|++.++
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 76 4567 8889999999999999999999987
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.0003 Score=60.19 Aligned_cols=88 Identities=10% Similarity=-0.068 Sum_probs=40.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003393 708 VIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAG----QGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC 783 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 783 (823)
|...|...+.+++|+++|++..+.| +...+..|...|.. .+++++|++++++..+.| +...+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333344444444444444432 33344444444444 445555555555554432 3344444555554
Q ss_pred h----cCChHHHHHHHHHHhhc
Q 003393 784 K----ARKYKEAMDFLSKIKER 801 (823)
Q Consensus 784 ~----~g~~~~A~~~~~~~~~~ 801 (823)
. .++.++|.++++++.+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 45555555555555544
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.84 E-value=8.9e-05 Score=61.21 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003393 721 AMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 721 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
|+..|++.++.. +-+...+..+..+|...|++++|+..++++++.... +...|..++.+|...|++++|...++++.+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555421 123455566666666666666666666666654322 455566666666666666666666666666
Q ss_pred cCCC
Q 003393 801 RDDS 804 (823)
Q Consensus 801 ~~~~ 804 (823)
..|+
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 5554
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.84 E-value=4.3e-05 Score=65.52 Aligned_cols=97 Identities=6% Similarity=-0.027 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003393 717 LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGM----------FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKAR 786 (823)
Q Consensus 717 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 786 (823)
.+++|++.+++.++.+ +-+...|..+..++...|+ +++|+..|+++++..+. +...|..++.+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhc
Confidence 3444444444444421 1123344444444444433 35777777777764322 4566777777776653
Q ss_pred -----------ChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003393 787 -----------KYKEAMDFLSKIKERDDSFNDESVKRLTFRV 817 (823)
Q Consensus 787 -----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 817 (823)
++++|++.++++++++|++ ..+...++..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~--~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDN--THYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 7788888888888888775 3444444433
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.84 E-value=4.5e-05 Score=77.26 Aligned_cols=121 Identities=10% Similarity=-0.098 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003393 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSG 746 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 746 (823)
...+..+...+.+.|++++|+..|++.++. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666667777777888888888777664 233221 222333444333221 1378889999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 747 YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
|.+.|++++|+..++++++.... +...|..++.+|...|++++|.+.++++.+.+|++..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 99999999999999999985432 6889999999999999999999999999999998644
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=2.6e-05 Score=63.91 Aligned_cols=96 Identities=8% Similarity=0.031 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC------HHHH
Q 003393 702 LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN------ELTY 775 (823)
Q Consensus 702 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 775 (823)
...+..+...+...|++++|++.|++.++.. +.+...+..+..++...|++++|++.++++++.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4556667777777788888888887777641 224566777777788888888888888888764322 2 4556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 003393 776 KIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
..+..++...|+.++|.+.++++.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHhHhhhHhHHHHhH
Confidence 666777777777766666555443
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.0012 Score=56.31 Aligned_cols=89 Identities=4% Similarity=-0.201 Sum_probs=40.6
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003393 673 LMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR----QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYA 748 (823)
Q Consensus 673 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 748 (823)
|...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|+++|++..+.| +...+..|...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333434444444444444444432 33444444444444 444555555555544432 2334444444444
Q ss_pred c----CCChhHHHHHHHHHHhCC
Q 003393 749 G----QGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 749 ~----~g~~~~A~~~~~~~~~~~ 767 (823)
. .+++++|++++++..+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 4 445555555555555443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.00031 Score=74.13 Aligned_cols=91 Identities=8% Similarity=0.025 Sum_probs=48.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-CCC-hhH
Q 003393 639 LSICAKNSMYDRANEMLHLILES-----GMQ-P-NLVTYNNLMDMYARAGKCWKAEEILKGILKS-----GG-TPD-LVS 704 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~ 704 (823)
+..+...|++++|..++++.++. |.. | ...+++.|..+|...|++++|..++++.++. |. .|+ ..+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34455677777777777666542 111 1 1234556666666666666666666655421 11 111 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMT 729 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~ 729 (823)
++.|...|..+|++++|..++++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555555544
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.72 E-value=0.0001 Score=58.90 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 003393 737 IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 737 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 803 (823)
...+..+..+|...|++++|++.++++++.... +...|..++.+|...|++++|.+.++++.+..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 344555555555555555555555555553322 344555555555555555555555555555443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.62 E-value=0.00018 Score=61.62 Aligned_cols=95 Identities=6% Similarity=-0.010 Sum_probs=55.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003393 644 KNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKC----------WKAEEILKGILKSGGTPDLVSYNTVIKGFC 713 (823)
Q Consensus 644 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 713 (823)
+.+.+++|++.++..++..+. +...|..+..++...+++ ++|+..|++.++.... +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 344566666666666665533 566666666666655543 3666666666654211 4456666666666
Q ss_pred hcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003393 714 RQG-----------LMQEAMRMLYEMTNRGIRPCIFTYNT 742 (823)
Q Consensus 714 ~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ 742 (823)
..| ++++|++.|++.++ +.|+...|..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~ 129 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLK 129 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 553 56666666666666 4555544433
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00079 Score=54.75 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003393 736 CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 736 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+...+..+...+...|++++|++.++++++.... +...|..++.+|.+.|++++|++.++++.+.+|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567888899999999999999999999986433 68889999999999999999999999999999987
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00048 Score=72.73 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=27.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILES-----GMQ-P-NLVTYNNLMDMYARAGKCWKAEEILKGIL 694 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 694 (823)
+++.|..+|...|++++|..+++++++. |.. | ...+++.|...|..+|++++|+.++++..
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555555555444321 111 1 11234444455555555555555554443
No 205
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.52 E-value=0.0008 Score=56.91 Aligned_cols=98 Identities=8% Similarity=0.081 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 003393 718 MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG---MFTEIDEVIKHMFQHNCKP--NELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
+..+.+.|.+..+.|. ++..+...+.+++++++ ++++++.+++...+.+ .| +...+..|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666766666544 68888888889999988 6678999999998754 24 4667788888999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003393 793 DFLSKIKERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 819 (823)
++++.+++..|++. ....|.+.+.+
T Consensus 92 ~y~~~lL~ieP~n~--QA~~Lk~~ie~ 116 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN--QAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 99999999999863 33444444433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.50 E-value=0.00093 Score=51.90 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 740 YNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 740 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+..+...+...|++++|+..++++++.... +...+..++.+|.+.|++++|.++++++.+.+|+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 333444444444444444444444432211 2334444444444444444444444444444443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.47 E-value=0.00083 Score=52.19 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003393 701 DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 701 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
+...+..+...+...|++++|+..|++.++.. +-+...+..+..++...|++++|++.++++++.... +...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 35678888999999999999999999999852 235678889999999999999999999999985433 5777888887
Q ss_pred HHHhcC
Q 003393 781 GYCKAR 786 (823)
Q Consensus 781 ~~~~~g 786 (823)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776654
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.38 E-value=0.00074 Score=55.50 Aligned_cols=78 Identities=21% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 651 ANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 651 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
|++.|+++++.... +...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.++
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445554443322 44455555555555555555555555555432 12344455555555555555555555555544
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.36 E-value=0.012 Score=55.65 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCh
Q 003393 718 MQEAMRMLYEMTNRGIRPC---IFTYNTFVSGYAGQ-----GMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA-RKY 788 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~ 788 (823)
..+|..++++.++ +.|+ ...|..|...|... |+.++|.+.|+++++.+..-+..++..+++.|++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 5678888888888 5676 55788888888884 99999999999999954432478888999999985 999
Q ss_pred HHHHHHHHHHhhcCCC
Q 003393 789 KEAMDFLSKIKERDDS 804 (823)
Q Consensus 789 ~~A~~~~~~~~~~~~~ 804 (823)
++|.+++++++..+|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999998888
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.30 E-value=0.0018 Score=50.34 Aligned_cols=81 Identities=10% Similarity=0.066 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHH
Q 003393 735 PCIFTYNTFVSGYAGQGM---FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVK 811 (823)
Q Consensus 735 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 811 (823)
.|...+..+..++...++ .++|..+++++++..+. +......++..+.+.|++++|.++++++++.+|+.+ ...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~--~~~ 80 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL--DRV 80 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC--CHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--cHH
Confidence 456677777777764444 68899999999885443 677888888999999999999999999998888822 234
Q ss_pred HHHHHHH
Q 003393 812 RLTFRVR 818 (823)
Q Consensus 812 ~l~~~~~ 818 (823)
.+...|.
T Consensus 81 ~i~~~I~ 87 (93)
T 3bee_A 81 TIIESIN 87 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.30 E-value=0.0017 Score=51.53 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003393 708 VIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIF-TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA 785 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 785 (823)
.+..+...|++++|+..|+++++. .| +.. .+..+..+|...|++++|++.++++++.... +...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH--------
Confidence 445666777777777777777763 33 345 6666777777777777777777777764332 2222211
Q ss_pred CChHHHHHHHHHHhhcCCCC
Q 003393 786 RKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 786 g~~~~A~~~~~~~~~~~~~~ 805 (823)
+.+.+|...+++....+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 45566666666665555543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.0046 Score=61.21 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003393 734 RPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 734 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
..+..+|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4456777777766767788888888888888854 677777788888888888888888888888888875
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.14 E-value=0.00077 Score=53.55 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003393 746 GYAGQGMFTEIDEVIKHMFQHNCKPNEL-TYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
.+...|++++|++.++++++.... +.. .|..++.+|...|++++|.+.++++.+.+|++..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 344445555555555555543211 333 4445555555555555555555555555555443
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.10 E-value=0.0018 Score=51.47 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 701 DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 701 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+...+..+..+|...|++++|+..|++.++.+ +-+...|..+..+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555666666666666555531 11244555555556666666666666655554
No 215
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.95 E-value=0.011 Score=48.00 Aligned_cols=99 Identities=8% Similarity=0.068 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 003393 717 LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTE---IDEVIKHMFQHNCKP--NELTYKIVVDGYCKARKYKEA 791 (823)
Q Consensus 717 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 791 (823)
.+..+.+.|.+....|. ++..+-..+.+++.++.+.++ ++.+++.+.+.+ .| +......|+-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34555566666655544 777888888889998887766 888888888754 23 455667788899999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003393 792 MDFLSKIKERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 819 (823)
+++++.+++..|++. ....|...|.+
T Consensus 94 ~~~~~~lL~~eP~n~--QA~~Lk~~i~~ 119 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNN--QAKELERLIDK 119 (126)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHH
Confidence 999999999999863 33444444443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.91 E-value=0.0051 Score=63.75 Aligned_cols=86 Identities=6% Similarity=-0.096 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCC-CCC-HHHHHHHHH
Q 003393 715 QGLMQEAMRMLYEMTNR---GIRPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ-----HNC-KPN-ELTYKIVVD 780 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~ 780 (823)
.|++++|..++++.++. -+.|+ ..+++.|+.+|...|++++|+.+++++++ .|. .|+ ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665541 12222 24566677777777777777777776653 232 222 445677777
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 003393 781 GYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 781 ~~~~~g~~~~A~~~~~~~~~ 800 (823)
.|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777777764
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.86 E-value=0.017 Score=57.23 Aligned_cols=143 Identities=13% Similarity=0.058 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHH--cc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cC-C----HhHHHHHHHHHHH
Q 003393 629 KPDLVIFNSMLSICA--KN---SMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR---AG-K----CWKAEEILKGILK 695 (823)
Q Consensus 629 ~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~----~~~A~~~~~~~~~ 695 (823)
..+...|...+.+.. .. ....+|+.+|+++++..+. ....|..+..+|.. .+ . .......++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 345666776665543 22 3357889999999886533 34455544444431 11 1 1111112222111
Q ss_pred c-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 003393 696 S-GGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELT 774 (823)
Q Consensus 696 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 774 (823)
. ....+..+|..+...+...|++++|...++++++.+ |+...|..+...+...|++++|++.++++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 124566788888777777899999999999999954 78888888899999999999999999999984 455555
Q ss_pred HH
Q 003393 775 YK 776 (823)
Q Consensus 775 ~~ 776 (823)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.0071 Score=62.81 Aligned_cols=90 Identities=9% Similarity=0.019 Sum_probs=51.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCC-CCC-HHHHH
Q 003393 711 GFCRQGLMQEAMRMLYEMTNR---GIRPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ-----HNC-KPN-ELTYK 776 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~ 776 (823)
.+..+|++++|..++++.++. -+.|+ ..+++.|+.+|...|++++|+.+++++++ .|. .|+ ..++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666666542 11222 23456666666666666666666666653 221 122 34566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh
Q 003393 777 IVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 777 ~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
.|+..|...|++++|..+++++.+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777777777777777766653
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.73 E-value=0.014 Score=46.65 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003393 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQHN------CKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
-+..|+..+...|+++.|+..++.+++.- -.....++..|+.+|.+.|++++|..+++++.+..|++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 34455555666666666666666655420 012355566667777777777777777777777766653
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.60 E-value=0.0084 Score=62.09 Aligned_cols=61 Identities=7% Similarity=-0.069 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNR-----G-IRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
+++.|..+|...|++++|..++++.++- | ..|+ ..+++.|...|...|++++|+.++++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3444444444444555444444444321 1 1122 2335555666666666666666665554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.40 E-value=0.024 Score=58.85 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=64.4
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcC---CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHH
Q 003393 675 DMYARAGKCWKAEEILKGILKSG---GTPD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR-----G-IRPC-IFTY 740 (823)
Q Consensus 675 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~ 740 (823)
.-+.+.|++++|+.++++.++.. +.++ ..+++.++.+|...|++++|+.+++++++- | ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34556778888888888777431 1222 256778888888888888888888877641 1 1233 3457
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 741 NTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 741 ~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+.|...|...|++++|+.+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8888889999999999998888864
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.34 E-value=0.14 Score=58.78 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 003393 609 KCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEE 688 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 688 (823)
..|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...|...|+.+...+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 345555555443321 2556777777777777777777777776542 3344455555666655555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 003393 689 ILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLY 726 (823)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 726 (823)
+.+.....| -++....+|.+.|++++|+++|.
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 444444322 12222334444555555555443
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.30 E-value=2.6e-07 Score=92.07 Aligned_cols=234 Identities=13% Similarity=0.151 Sum_probs=137.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 175 DKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLD 254 (823)
Q Consensus 175 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 254 (823)
.+.+|..+.++....++..+|++.|-... |+..|..+|....+.|++++-+..+...++.. -+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 56678888888888887777766554332 55667788888888888888888887666542 34444467778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 003393 255 VYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYS 334 (823)
Q Consensus 255 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~ 334 (823)
+|++.++- .+..+++ -.|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 125 ayAk~~rL-~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRL-AELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSS-STTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHhhCcH-HHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 88887762 3222211 135555566777778888888888777765432 233444455556665
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003393 335 EALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMK 414 (823)
Q Consensus 335 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 414 (823)
.|.+.-++ ..++.||..+-.+|...+++.-|...--.++-..-. ...++..|-..|.+++-+.+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 55443322 125566777667777766666555443333322111 1234555666666666666666655
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003393 415 ESGCAPNVCTYNAVLGMLGKKGRSEEMMKILC 446 (823)
Q Consensus 415 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 446 (823)
... ......|+-|.-.|++- +.++.++.++
T Consensus 257 glE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 257 GLE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CCC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 321 23555666666666654 2344444433
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.20 E-value=0.054 Score=45.79 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhHHH
Q 003393 683 CWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG---LMQEAMRMLYEMTNRGIRP--CIFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 683 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 757 (823)
...+.+.|.+..+.+. ++..+...+..++++.+ ++++++.+|++..+.+ .| +...+..|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555554433 45555556666666666 4556777777666642 23 2344555566667777777777
Q ss_pred HHHHHHHh
Q 003393 758 EVIKHMFQ 765 (823)
Q Consensus 758 ~~~~~~~~ 765 (823)
++++.+++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777766
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.98 E-value=0.13 Score=41.72 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003393 732 GIRPCIFTYNTFVSGYAGQGMF---TEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 732 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
+-.|...+--.+.+++.++.+. .+++.+++.+.+.+..-....+..|+-++.+.|++++|+++++.+++..|++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~-- 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK-- 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH--
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH--
Confidence 3456777777788888877654 46888888888755322466677888899999999999999999999999974
Q ss_pred HHHHHHHHHHH
Q 003393 809 SVKRLTFRVRE 819 (823)
Q Consensus 809 ~~~~l~~~~~~ 819 (823)
....|...|.+
T Consensus 113 QA~~Lk~~Ie~ 123 (134)
T 3o48_A 113 QVGALKSMVED 123 (134)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.94 E-value=0.29 Score=40.40 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHH
Q 003393 734 RPCIFTYNTFVSGYAGQGMF---TEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESV 810 (823)
Q Consensus 734 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 810 (823)
.|+..+--.+.+++.++.+. .+++.+++.+.+.+..-.......|+-++.+.|++++|+++++.+++..|++. ..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~--QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK--QV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH--HH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH--HH
Confidence 56777777788888887764 46888888888754433455667788899999999999999999999999863 33
Q ss_pred HHHHHHHHH
Q 003393 811 KRLTFRVRE 819 (823)
Q Consensus 811 ~~l~~~~~~ 819 (823)
..|...+.+
T Consensus 114 ~~Lk~~Ie~ 122 (144)
T 1y8m_A 114 GALKSMVED 122 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.80 E-value=0.23 Score=56.99 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=25.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 003393 398 GRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMK 449 (823)
Q Consensus 398 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 449 (823)
...|+++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3456666666554332 244556666666666666666666666553
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.46 E-value=1.1 Score=38.85 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=54.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 003393 398 GRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVN 477 (823)
Q Consensus 398 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 477 (823)
...|+++.|.++.+++ .+...|..|.......|+++-|.+.|....+ +..+.-.|...|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4566666666665554 1455666666666666666666666666542 223333444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003393 478 QVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFED 517 (823)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 517 (823)
++-+.....| -++.....+...|+++++.++|.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544444433 123333344556666666666644
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.37 Score=41.87 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=89.9
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003393 642 CAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEA 721 (823)
Q Consensus 642 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 721 (823)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+.. | +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHHHH
Confidence 35789999999987654 378899999999999999999999998774 2 34555567778888776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003393 722 MRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 722 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
.++-+.....|- ++....++...|+++++++++.+.-+ -|... -.....|-.+.|.++.+++-
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 666555554431 34445556678999999999865532 22211 12233577788888887764
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.39 E-value=0.21 Score=47.24 Aligned_cols=92 Identities=18% Similarity=0.074 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CCH
Q 003393 648 YDRANEMLHLILESGMQPN---LVTYNNLMDMYARA-----GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQ-GLM 718 (823)
Q Consensus 648 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 718 (823)
...|..+++++++.. |+ ...|..|...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 456777777777753 44 45777888888874 88888888888888754322466777777777774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHH
Q 003393 719 QEAMRMLYEMTNRGIR--PCIFTYN 741 (823)
Q Consensus 719 ~~A~~~~~~m~~~~~~--p~~~~~~ 741 (823)
++|.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888875444 5543333
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.34 E-value=0.44 Score=39.61 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 751 GMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 751 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
++.++|.++|+.+++.+-+- ...|-..++--.++|++..|.+++.+++...|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 34444455544444321111 444444444444455555555555555544444
No 232
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.30 E-value=0.24 Score=38.17 Aligned_cols=65 Identities=11% Similarity=-0.062 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 003393 631 DLVIFNSMLSICAKNSM---YDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 696 (823)
+...+..+..++...++ .++|..++++.++.... +......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555443322 56666666666665433 5555666666666666666666666666654
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.26 E-value=3.2 Score=43.06 Aligned_cols=282 Identities=14% Similarity=0.116 Sum_probs=149.5
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 003393 506 GSGVDATKMFEDMMKT-----GFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKG 580 (823)
Q Consensus 506 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (823)
|+++.|++.+..+.+. +..........++..|.+.|+|+...+.+..+....-. .......+++.+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~------ 102 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVME------ 102 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHH------
Confidence 6778888777666542 23445667778888888889988887777665543211 12222223322210
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHhhhhh--hHHHHHHHHHHHH---HCCCCC---CHHHHHHHHHHHHccCChHHHH
Q 003393 581 IRKIEKEIYAGRIFPSWMLLRTLILVNFKCR--ALQGMERAFQELQ---KHGYKP---DLVIFNSMLSICAKNSMYDRAN 652 (823)
Q Consensus 581 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 652 (823)
...... +.+.-..+.+.+. +..+.. .......|...|...|++.+|.
T Consensus 103 -------------------------~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~ 157 (445)
T 4b4t_P 103 -------------------------YLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAA 157 (445)
T ss_dssp -------------------------HHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------------------------HHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 000000 0000111111110 001111 1123345667777888888888
Q ss_pred HHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHH----cCCCCCh--hHHHHHHHHHHhcCCHHHH
Q 003393 653 EMLHLILES--GMQPN---LVTYNNLMDMYARAGKCWKAEEILKGILK----SGGTPDL--VSYNTVIKGFCRQGLMQEA 721 (823)
Q Consensus 653 ~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~g~~~~A 721 (823)
+++..+... +.... ...+...+..|...+++.+|..+++++.. ....|+. ..+...+..+...+++.+|
T Consensus 158 ~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 158 DILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 888877632 22211 24556677888888999999888888642 2112222 3466677778888899888
Q ss_pred HHHHHHHHHc-CCCCCHHHH----HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CChHHHHHH
Q 003393 722 MRMLYEMTNR-GIRPCIFTY----NTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA--RKYKEAMDF 794 (823)
Q Consensus 722 ~~~~~~m~~~-~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~ 794 (823)
.+.|.++.+. ...-|...+ ..++.+..-.+....-..++.......--++...|..|+.+|... .+++.+.+.
T Consensus 238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~ 317 (445)
T 4b4t_P 238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKT 317 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHH
Confidence 8888877652 111122222 112222222222122222233332211224667788899888765 467777777
Q ss_pred HHHHhhcCCCC-----CHHHHHHHHHHHHH
Q 003393 795 LSKIKERDDSF-----NDESVKRLTFRVRE 819 (823)
Q Consensus 795 ~~~~~~~~~~~-----~~~~~~~l~~~~~~ 819 (823)
+...+..++-. ....|..|..++.+
T Consensus 318 ~~~~L~~~~~~~~~~~~~~~~~~L~~~v~e 347 (445)
T 4b4t_P 318 YEPVLNEDDLAFGGEANKHHWEDLQKRVIE 347 (445)
T ss_dssp TCSSTTTCCSSCCCSCSSHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhcchhhHHHHHHHHHHHH
Confidence 76665544432 24556666666554
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.09 E-value=0.2 Score=39.69 Aligned_cols=63 Identities=6% Similarity=-0.097 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRG------IRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
-...++..+...|+++.|...|++..+.- -.....++..|..++.+.|++++|+.+++++++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34456666667777777777776665520 1123456677777777777777777777777763
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.06 E-value=1 Score=36.58 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=26.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003393 644 KNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGI 693 (823)
Q Consensus 644 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 693 (823)
-.|..++..++..+..+.. +..-||.++--....-+.+-..++++.+
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~I 65 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKI 65 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHH
Confidence 4577777777777776642 4444555554444444555555555444
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.58 E-value=7.7 Score=43.72 Aligned_cols=188 Identities=10% Similarity=-0.024 Sum_probs=83.3
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 003393 431 MLGKKGRSEEMMKILCDMKSSGCSPNRI--TWNTMLTMCGNKGLDKYVNQVFREMKSCGF--E-----PDRDTFNTLISA 501 (823)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~li~~ 501 (823)
+....|+.++++.++......+...+.. .-..+.-+....|..+++..++.......- . +....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556677777777776655421111222 222222234445544456665555443210 0 111122233333
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHc
Q 003393 502 YGRCGS-GVDATKMFEDMMKTGFTPCVTT--YN--AFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNC--YAK 574 (823)
Q Consensus 502 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~ 574 (823)
+...|. -+++.+.+..++... +... .. +|...++-.|+-+....++..+.+.. +......+..+ +..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333333 234555555555421 2111 11 22223345566666666666655431 33333333333 335
Q ss_pred cCChhHHHHHHHHHHhCCCCChH--HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 003393 575 GGNLKGIRKIEKEIYAGRIFPSW--MLLRTLILVNFKCRALQGMERAFQELQK 625 (823)
Q Consensus 575 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 625 (823)
.|+.+.+..+.+.+.... .+.. .....+...|+..|+.....++++.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 566666666655554321 1111 1122334456666666666666666554
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.24 E-value=0.44 Score=38.59 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH---HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHH
Q 003393 611 RALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDR---ANEMLHLILESG-MQPNLVTYNNLMDMYARAGKCWKA 686 (823)
Q Consensus 611 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 686 (823)
..+..+.+.|......|. ++..+-..+..++.+..+... ++.+++.+.+.+ ..-.......|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555555665555443 566666666667776665554 777777766643 101233444555666777777777
Q ss_pred HHHHHHHHHc
Q 003393 687 EEILKGILKS 696 (823)
Q Consensus 687 ~~~~~~~~~~ 696 (823)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.92 E-value=0.8 Score=38.11 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHccCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCCHhHHHHHHHHHHHcC
Q 003393 631 DLVIFNSMLSICAKNSMY------DRANEMLHLILESGMQPNLV----TYNNLMD---MYARAGKCWKAEEILKGILKSG 697 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~ 697 (823)
|..+|-..+....+.|+. ++.+++|+++... ++|+.. .|..|.- .+...++.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 556666666666666777 7777788777764 334321 1111111 1123356666666666665432
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003393 698 GTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGI 733 (823)
Q Consensus 698 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 733 (823)
-+- ...|.....--.++|++..|.+++.+.+..+.
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 222 34444444444556666666666666665443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.67 E-value=0.59 Score=51.47 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=43.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003393 744 VSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 744 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
+.-|...|+++-|+++.++++.. .| +..+|..|+.+|.+.|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456678888888888888874 44 57888888888888888888888888875
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.29 E-value=0.00016 Score=72.48 Aligned_cols=266 Identities=12% Similarity=0.171 Sum_probs=174.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003393 210 DVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVI 289 (823)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (823)
.+.+|..|..++...+++.+|++.|-+ --|...|..+|....+.|. +++.+.++.-.++.- -+..+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~-~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGN-WEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSC-CTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHh--cccccHHHHH
Confidence 346788899999999999988877632 2366778888888888887 677777776555542 2444556788
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHH
Q 003393 290 SACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYE 369 (823)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (823)
-+|++.+++.+-++++. .||..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq 187 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGG
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHH
Confidence 88888888765443321 4677777788888888888888877775443 2444556677788887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 003393 370 EGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMK 449 (823)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 449 (823)
.|.+.-++ . -++.||..+-.+|...+.+..|...--.++-. ..-...++..|-..|.+++-+.+++.-.
T Consensus 188 ~AVdaArK---A---ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK---A---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT---C---CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh---c---CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 77654433 2 25668888889999999888776655555432 1122346777889999999999998877
Q ss_pred hCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHHhcCChHHHHH
Q 003393 450 SSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKS-CGFEP------DRDTFNTLISAYGRCGSGVDATK 513 (823)
Q Consensus 450 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 513 (823)
.. -......|+-|.-.|++-. .++.++.++..-. .+++- ....|.-++-.|.+-.+++.|..
T Consensus 257 gl-ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CC-CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 43 1235566777777776653 4444443333221 12221 12345666666666666666543
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.21 E-value=0.52 Score=35.81 Aligned_cols=65 Identities=11% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 003393 755 EIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREI 820 (823)
Q Consensus 755 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 820 (823)
+..+.++.+....+-|++.+..+.+++|.|.+++.-|.++++.+..+.... .++|.-+++.|+-.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqElkPt 92 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPT 92 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhhH
Confidence 444555555555566666666666666666666666666666666555443 44555555555543
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.18 E-value=2.9 Score=33.98 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003393 460 WNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTG 522 (823)
Q Consensus 460 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 522 (823)
....+......|+.++..+++..+... .+++......+..+|.+.|+..+|.+++.+.-++|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333444444445555544544443221 23444444444455555555555555554444444
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.44 E-value=8.2 Score=37.28 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=59.0
Q ss_pred HHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003393 183 VRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAIS----LFEKVKEMGLSPTLVTYNVMLDVYGK 258 (823)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~~~~~~~~~ll~~~~~ 258 (823)
..-|.+++++++|.+++.. -...+.+.|+...|.+ +.+.+.+.+.+++......++..+..
T Consensus 40 ~~Ry~~~~~~~eAidlL~~---------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 40 ANRYVRSKSYEHAIELISQ---------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3445666777777776554 2223345566554444 34445555677777776666666655
Q ss_pred cCCCHHHHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003393 259 MGRSWDRILGLLDEMR----SRG--LEFDEFTCSTVISACGREGLLNEAKEFFA 306 (823)
Q Consensus 259 ~~~~~~~a~~~~~~m~----~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 306 (823)
.......-.++++++. +.| ..-+...+..+...|.+.|++.+|+..|-
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3321111222333332 221 12356667777777777777777776664
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.05 E-value=19 Score=40.65 Aligned_cols=255 Identities=11% Similarity=0.028 Sum_probs=118.8
Q ss_pred HHHccCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--C-----CCHHHHHHHHHH
Q 003393 466 MCGNKGLDKYVNQVFREMKSCG--FEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGF--T-----PCVTTYNAFLNA 536 (823)
Q Consensus 466 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~li~~ 536 (823)
+....|+.+++..++......+ -.+....-..+.-+....|...++..++...+...- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3566777777777766554321 111223334444556666766677777766654311 0 011112222222
Q ss_pred HHH--cCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhh
Q 003393 537 LAR--RGDWKAAESVILDMQNKGFKPSETS----FSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKC 610 (823)
Q Consensus 537 ~~~--~g~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 610 (823)
++- .++ +++.+.+..+.... +... -..+...+.-.|+.+....+...+.... ..++.....+.......
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 222 333 34555555555432 2211 1122233445666666666666554322 11222222222333355
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 003393 611 RALQGMERAFQELQKHGYKPDLV-IFN---SMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKA 686 (823)
Q Consensus 611 ~~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 686 (823)
|+.+.+..+.+.+... .+.. -|. ++.-+|+-.|+.....+++..+.+.. ..++.....+.-++...|+.+.+
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 6666666666666553 1222 222 23335566777666666777776532 11222222222333345666666
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 003393 687 EEILKGILKSGGTPDLVSYNTVIKGFCRQGL-MQEAMRMLYEMTN 730 (823)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 730 (823)
.++++.+.+.+ .|....-..+.-+....|+ ..+|+.++..+..
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66665554432 2222222222333333333 2567777777764
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.44 E-value=15 Score=38.06 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC--HHHH
Q 003393 707 TVIKGFCRQGLMQEAMRMLYEMTNR--GIRPC---IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ----HNCKPN--ELTY 775 (823)
Q Consensus 707 ~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~ 775 (823)
.|...|...|++.+|.+++.++... |.... ...+..-++.|...+++..|..+++++.. ....|+ ...+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 3445555555555555555555431 11111 12233444555555555555555555421 111111 2234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 003393 776 KIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
...+..+...+++.+|-+.|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555555555555444
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.95 E-value=5.3 Score=33.00 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=39.0
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 699 TPDLVSYNTVIKGFCRQGL---MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 699 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.++..+--.+.+++.++.+ ..+++.+++++...+-.-.......|.-++.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455444455566666654 345666676666532211233445555667777777777777777776
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.79 E-value=2.3 Score=34.63 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=45.0
Q ss_pred CCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 003393 698 GTPDLVSYNTVIKGFCRQGL---MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP 770 (823)
Q Consensus 698 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 770 (823)
..++..+--.+.+++.+..+ ..+++.+++++.+.+-.-....+..|.-++.+.|++++|.++.+.+++ ++|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP 109 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 109 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCC
Confidence 34555555556666776654 346777777777643111244556666677788888888888888876 445
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.78 E-value=1.2 Score=35.89 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003393 756 IDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREIL 821 (823)
Q Consensus 756 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 821 (823)
..+-++.+...++-|++.+....+++|.+-+++.-|.++++.++.+.... .++|.-+++.|+-.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~lqElkPtl 136 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQELRPTL 136 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHhhHH
Confidence 44455555555566666666666666666666666666666666555333 445666666655443
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.80 E-value=15 Score=35.47 Aligned_cols=81 Identities=10% Similarity=-0.068 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc---CChhHHHHHHHHHHhCCCCChHHHHH
Q 003393 525 PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKG---GNLKGIRKIEKEIYAGRIFPSWMLLR 601 (823)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (823)
-+......+...|.+.|++.+|...|-. |-.-+...+..++.-+... |...++. ....
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d---------------lf~~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA---------------EFFS 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH---------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHH---------------HHHH
Confidence 3667777788888888888888776631 1111344455555444443 3322211 1122
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHH
Q 003393 602 TLILVNFKCRALQGMERAFQELQ 624 (823)
Q Consensus 602 ~l~~~~~~~~~~~~a~~~~~~~~ 624 (823)
..+..|...+++..|..+|+...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 33344555667777777666554
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.58 E-value=1.3 Score=48.84 Aligned_cols=125 Identities=13% Similarity=0.048 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHC------CCCC-CHH-
Q 003393 215 TSILHAYSKAGK-YEKAISLFEKVKEMGLSPTLVT--YNVMLDVYGKMGRSWDRILGLLDEMRSR------GLEF-DEF- 283 (823)
Q Consensus 215 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~- 283 (823)
..++..+...|+ ++.|+.+|+++.+. .|.... ...++..+...+..--+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444545566 58899999999886 343333 2334444443332224555555554321 1111 110
Q ss_pred ---------HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHH
Q 003393 284 ---------TCSTVISACGREGLLNEAKEFFAGLKLEGYVPG-TVTYNSLLQVFGKAGVYSEALSILKEM 343 (823)
Q Consensus 284 ---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m 343 (823)
....=.+.|...|+++.|+++-++.... .|+ ..+|..|..+|.+.|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1111123455677777777777776665 333 557777777777777777777776665
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.08 E-value=17 Score=35.27 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=56.8
Q ss_pred HHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHh
Q 003393 183 VRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLF----EKVKEMGLSPTLVTYNVMLDVYGK 258 (823)
Q Consensus 183 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~ll~~~~~ 258 (823)
..-|.+++++.+|.+++.. -...+.+.|+...|.++- +.+.+.++++|......++..+..
T Consensus 42 ~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 3445667777777776543 222334445554443333 444555666676666666666655
Q ss_pred cCCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003393 259 MGRSWDRILGLLDEMRS----RG--LEFDEFTCSTVISACGREGLLNEAKEFF 305 (823)
Q Consensus 259 ~~~~~~~a~~~~~~m~~----~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 305 (823)
....-..-..+++++.+ .| ..-|......+...|.+.+++.+|+..|
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 54321122223333221 11 2235556666667777777777776666
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.29 E-value=31 Score=37.21 Aligned_cols=115 Identities=10% Similarity=-0.042 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003393 647 MYDRANEMLHLILESGMQPNLVTYNNLMDMY----ARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAM 722 (823)
Q Consensus 647 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 722 (823)
+.+.|...+....+... .+......+-... ...+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888877765432 2333222222222 23343445666666554432 23323333333445668888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 723 RMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 723 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
..|+.|..... -......-+.+++...|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88887765211 1233334456677778888888888888874
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.01 E-value=3.3 Score=42.00 Aligned_cols=70 Identities=7% Similarity=-0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHH
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ-----HNCKPNELTY 775 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 775 (823)
...++..+...|++++|+..++.+... .+-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 445667788889999998888888774 344677888889999999999999988888753 6888876543
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.95 E-value=21 Score=34.75 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHH
Q 003393 525 PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLI 604 (823)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 604 (823)
-+......+...|.+.+++.+|...|- .|-.+....+..++.-+...+...++ .......+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~---------------dlfiaRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTA---------------PLYCARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH---------------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH---------------HHHHHHHH
Confidence 466777778888888888888887762 23333335665555555444432221 11223334
Q ss_pred HHhhhhhhHHHHHHHHHHHH
Q 003393 605 LVNFKCRALQGMERAFQELQ 624 (823)
Q Consensus 605 ~~~~~~~~~~~a~~~~~~~~ 624 (823)
..|...+++..|..+++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 45556666777766655544
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.56 E-value=5.4 Score=33.98 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCh-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH-H
Q 003393 670 YNNLMDMYARAGKCWKAEEILKGILKSG-GTPDL-------VSYNTVIKGFCRQGLMQEAMRMLYEMTNR-GIRPCIF-T 739 (823)
Q Consensus 670 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~-~ 739 (823)
+..-+......|.++.|+-+.+.+.... ..++. .++..+.+++...|++..|...|++.+.. ..-+... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444666777888888888777765321 12231 24566778888888888888888886542 1111111 1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003393 740 YNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 740 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
...+.. ...... ......+...-.-+..+|.+.|++++|+.+++.+..+.
T Consensus 103 ~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 103 RPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 111100 000000 00122234444558889999999999999988876544
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.31 E-value=9.3 Score=45.29 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 003393 283 FTCSTVISACGREGLLNEAKEFFAGLKLEGYVPG----TVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEV 358 (823)
Q Consensus 283 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (823)
.-|.-++..+.+.|.++.+.++-....+.....+ ...|..+.+.+...|++++|...+-.+.+... -......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 3466777777788888887777766554321111 12567777888888888888888877766543 23455566
Q ss_pred HHHHHHcC------------CHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 003393 359 VGAYVRAG------------FYEEGAALIDTMSSKG--LMPNAVTYTTLIDAYGRAGKVNKALRL-LNKMK 414 (823)
Q Consensus 359 i~~~~~~g------------~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~ 414 (823)
+..+|..| ..++..+++....+.. +.....-|..|=..+...|++..|-.+ |+.+.
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 66666544 4456666665433211 111123466666666677776655444 44443
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.86 E-value=31 Score=34.66 Aligned_cols=167 Identities=10% Similarity=-0.068 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCC-CC---CHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCHHHH-
Q 003393 597 WMLLRTLILVNFKCRALQGMERAFQELQKHGY-KP---DLVIFNSMLSICAKN-SMYDRANEMLHLILESGMQPNLVTY- 670 (823)
Q Consensus 597 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~- 670 (823)
......+...|.+.|+.++...++.....--. .+ .......+++.+... +..+.-.++..+.++-.-. ...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35667788899999999988888876643211 11 123456777777664 4455555555555531100 11222
Q ss_pred -----HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHH
Q 003393 671 -----NNLMDMYARAGKCWKAEEILKGILKSGGTPD-----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR--GIRPCIF 738 (823)
Q Consensus 671 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~ 738 (823)
..|+..|...|++.+|.+++.++.+.-...| ...+..-+..|...+++.++...+.+.... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 3678889999999999999888876422222 134555667788889999999888877652 2334443
Q ss_pred HHH----HHHHHHH-cCCChhHHHHHHHHHH
Q 003393 739 TYN----TFVSGYA-GQGMFTEIDEVIKHMF 764 (823)
Q Consensus 739 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~ 764 (823)
+-. .-+..+. ..++|.+|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 321 1233455 6888998888877765
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.67 E-value=2.6 Score=39.31 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=33.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 711 GFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
...+.|.+++|++....-++. -+-|...-..|+..+|-.|+|+.|.+-++.+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566677777666666654 123444555666666677777777776666665
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.24 E-value=7.2 Score=39.53 Aligned_cols=70 Identities=10% Similarity=0.062 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003393 671 NNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN-----RGIRPCIFTYN 741 (823)
Q Consensus 671 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 741 (823)
..++..+...|+..+|...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ -|+.|...+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345566667777777777777776542 34666777777777777777777777776553 37777765533
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.44 E-value=19 Score=42.75 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003393 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI----FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
-|..++..+.+.|.++.++++-+..++..-.-+. ..|..+.+.+...|++++|...+-.+-....+ ......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 3556667777777777777777766653111111 14666777777778888887777766553332 45566666
Q ss_pred HHHHhcCChH
Q 003393 780 DGYCKARKYK 789 (823)
Q Consensus 780 ~~~~~~g~~~ 789 (823)
..+|..|..+
T Consensus 979 ~~lce~~~~~ 988 (1139)
T 4fhn_B 979 NQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHhCCChh
Confidence 6666666544
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.24 E-value=17 Score=32.08 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 003393 715 QGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN 771 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 771 (823)
.++..++.++|..|..+|+--. ..-|...+..+...|++.+|.++|+.-++.+-+|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4457788888888888776654 44567777788888888888888888888777773
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.17 E-value=10 Score=39.06 Aligned_cols=97 Identities=14% Similarity=0.010 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHH--HH
Q 003393 669 TYNNLMDMYARAGKCWKAEEILKGILKSGG--TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN---RGIRPCIFT--YN 741 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~--~~ 741 (823)
+...+...|.+.|++++|.+.|.++..... ..-...+..++..+...+++..+...+.++.. .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567889999999999999999999986532 33346677788899999999999999988765 222232221 11
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHh
Q 003393 742 TFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 742 ~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.-+..+...+++.+|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 122334567889998888877764
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.05 E-value=12 Score=31.85 Aligned_cols=117 Identities=9% Similarity=-0.036 Sum_probs=69.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCChhH
Q 003393 635 FNSMLSICAKNSMYDRANEMLHLILES-GMQPNL-------VTYNNLMDMYARAGKCWKAEEILKGILKSG--GTPDLVS 704 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 704 (823)
+-.-+..+...|.++.|+-+.+.++.. +..++. .++..+.+++...|++..|...|++.++.. +..+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334466777899999999888876642 122332 256778889999999999999999976421 1111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
...+. ....... ......+...-.-+..+|.+.|++++|+.+++.+-
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11110 0000000 01122333444447888999999999999988763
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.33 E-value=15 Score=29.78 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=35.7
Q ss_pred CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003393 682 KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFV 744 (823)
Q Consensus 682 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 744 (823)
|..+..+-++.+...++.|++....+.+.+|.+.+++.-|+++|+-.+.+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34445555555555566666666666666666666666666666666554 222333444443
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.09 E-value=19 Score=27.49 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 003393 263 WDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQ 325 (823)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 325 (823)
.=++.+-++.+...++.|+..+..+.+++|.+.+++..|.++|+-++.+ +......|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3456667777777788888888888888888888888888888887765 1223344665553
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=77.40 E-value=42 Score=33.07 Aligned_cols=64 Identities=14% Similarity=0.276 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 003393 355 YNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGK--VNKALRLLNKMKESGCA 419 (823)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~ 419 (823)
.+.++.-|...|+.++|.+.++++...... ....+..+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 345666666667777777777666532211 12333444444443322 34455566666555443
No 267
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=75.92 E-value=94 Score=33.71 Aligned_cols=30 Identities=7% Similarity=0.177 Sum_probs=21.1
Q ss_pred CHHHHHHHHHH-----HHhcCChHHHHHHHHHHhh
Q 003393 771 NELTYKIVVDG-----YCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 771 ~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~ 800 (823)
+..++..|.+. +..+|++++|++.++++.-
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~l 566 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELLDL 566 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 34455555443 4788999999999999763
No 268
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.95 E-value=57 Score=30.77 Aligned_cols=169 Identities=9% Similarity=0.012 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHH
Q 003393 631 DLVIFNSMLSICAKNSM-----YDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSY 705 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 705 (823)
+..+-...+.++...+. ...+...+..+.. .++..+-...+.+....|+.+ +...+.++.+ .++..+-
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHH
Confidence 44444444444444331 2334444433332 345555555666666666532 4444444443 3455555
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003393 706 NTVIKGFCRQG-LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCK 784 (823)
Q Consensus 706 ~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 784 (823)
...+.++...| ...++...+..+.+ .++...-...+.++...|+ +++...+..+.+. ++ .-...+.++.+
T Consensus 177 ~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~d---~~--vr~~a~~aL~~ 247 (280)
T 1oyz_A 177 NWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD-KRVLSVLCDELKK---NT--VYDDIIEAAGE 247 (280)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC-GGGHHHHHHHHTS---SS--CCHHHHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC-HhhHHHHHHHhcC---cc--HHHHHHHHHHh
Confidence 55555555544 23455555555554 3566666667777777776 4455555555542 23 23445667777
Q ss_pred cCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003393 785 ARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVR 818 (823)
Q Consensus 785 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 818 (823)
.|+ .++...+.++....++ .......+..++
T Consensus 248 i~~-~~~~~~L~~~l~~~~~--~~~~~~~~~~l~ 278 (280)
T 1oyz_A 248 LGD-KTLLPVLDTMLYKFDD--NEIITSAIDKLK 278 (280)
T ss_dssp HCC-GGGHHHHHHHHTTSSC--CHHHHHHHHHHT
T ss_pred cCc-hhhhHHHHHHHhcCCC--cHHHHHHHHHhh
Confidence 777 4677778777765433 345555555443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.30 E-value=57 Score=30.44 Aligned_cols=116 Identities=19% Similarity=0.209 Sum_probs=66.8
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCCC
Q 003393 677 YARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIF----TYNTFVSGYAGQGM 752 (823)
Q Consensus 677 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~ 752 (823)
..+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+ +.|+.. .|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH------
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH------
Confidence 446677777777777766653 33666666777777778888888777777766 344432 33333322
Q ss_pred hhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCC
Q 003393 753 FTEIDEVIKHMFQHNCKP-----NELTYKIVVDGYC--KARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 753 ~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+..-++...-+-.| ...-...|+.++. ..|+.++|.+.-.++.+..|..
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 11222222222122 1223345555543 4588888888888887765543
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.81 E-value=35 Score=34.95 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=67.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc---CCCCChhH--HH
Q 003393 634 IFNSMLSICAKNSMYDRANEMLHLILES--GMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKS---GGTPDLVS--YN 706 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 706 (823)
+...+...|.+.|++++|.+++.++... +...-...+..++..+...+++..+...++++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566778888899999999999888863 33445567778888899999999999998887632 22222211 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003393 707 TVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 707 ~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
.-+..+...+++.+|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122344678899999888887653
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.43 E-value=34 Score=30.27 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=47.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003393 680 AGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC 736 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 736 (823)
+++..++.++|..|...|+.-.. .-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45578999999999988776544 5677888889999999999999999999877774
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.54 E-value=96 Score=31.08 Aligned_cols=160 Identities=11% Similarity=0.074 Sum_probs=88.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCChhHHH---
Q 003393 637 SMLSICAKNSMYDRANEMLHLILES--GMQP---NLVTYNNLMDMYARAGKCWKAEEILKGILKS--GGTPDLVSYN--- 706 (823)
Q Consensus 637 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~--- 706 (823)
-++..|...|++.+|.+++..+.+. .... -..++..-+.+|...+++.++...+...... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4677788888888888888887763 1111 1234555667788889999998888877532 1223332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHHc-C-C-CCC---HHHHHHHHHHHHcCCChhHHHHHHH-HH-HhCCCCCCHHHHH
Q 003393 707 -TVIKGFC-RQGLMQEAMRMLYEMTNR-G-I-RPC---IFTYNTFVSGYAGQGMFTEIDEVIK-HM-FQHNCKPNELTYK 776 (823)
Q Consensus 707 -~l~~~~~-~~g~~~~A~~~~~~m~~~-~-~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~-~~-~~~~~~p~~~~~~ 776 (823)
.-+-.+. ..+++.+|...|-+..+. . . .|. ...|..|.... .++..+...++. +. ... ..|+...+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 2233455 688899988888776531 1 1 111 12233332222 233333333222 21 222 245555556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh
Q 003393 777 IVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 777 ~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
.|+.+ ...|++.+...++++...
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~~~ 283 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEYKK 283 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHSTT
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHH
Confidence 66655 445688777777776543
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.23 E-value=55 Score=27.43 Aligned_cols=52 Identities=8% Similarity=0.114 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003393 754 TEIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 754 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+++..+|+.|...|+--. ..-|...+..+...|++.+|.++++..++..-+.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346777777776666543 4456677777777777777777777777666554
No 274
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=65.60 E-value=83 Score=30.21 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 754 TEIDEVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 754 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
.+..++.--+...+++|. .-+...-+....|.+++..|..+.+++++.+|.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344444444444445543 223444555566677777777777777777664
No 275
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=62.27 E-value=1.2e+02 Score=30.10 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003393 215 TSILHAYSKAGKYEKAISLFEKV 237 (823)
Q Consensus 215 ~~li~~~~~~g~~~~A~~~~~~m 237 (823)
..++.-|...|+.++|.+.++++
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34555555555555555555555
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=59.83 E-value=55 Score=24.89 Aligned_cols=78 Identities=13% Similarity=-0.057 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003393 717 LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLS 796 (823)
Q Consensus 717 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 796 (823)
..+||..+-+-+...+. ....-..-+..+...|+|++|..+.+.. ..||...|..| +-.+.|-.+++..++.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 35555555555544322 1111122233556677777777665544 35666666544 4467777777777776
Q ss_pred HHhhcC
Q 003393 797 KIKERD 802 (823)
Q Consensus 797 ~~~~~~ 802 (823)
++-..+
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 665554
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.65 E-value=56 Score=24.91 Aligned_cols=78 Identities=9% Similarity=-0.013 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003393 717 LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLS 796 (823)
Q Consensus 717 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 796 (823)
..+||..+-+-+...+. ....-..-+..+...|+|++|..+.+.. ..||...|..| +-.+.|-.+++..++.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHH
Confidence 35666665555554322 1111122234566777888777766555 35676666554 4467777777777776
Q ss_pred HHhhcC
Q 003393 797 KIKERD 802 (823)
Q Consensus 797 ~~~~~~ 802 (823)
++-..+
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.81 E-value=64 Score=29.08 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 755 EIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 755 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
++..+|..|...|+--. ..-|...+..|...|++.+|.++++..++..-+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44445555554444332 333444555555555555555555555544433
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=55.75 E-value=51 Score=32.48 Aligned_cols=63 Identities=10% Similarity=0.236 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCC
Q 003393 601 RTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSM--YDRANEMLHLILESGMQ 664 (823)
Q Consensus 601 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~ 664 (823)
..++.-|...++.++|.+.++++....+. ...+...+..++-+.++ .+...+++..+.+.|+-
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 44556666777777777777776532211 12334444444444332 34456666666665544
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.29 E-value=98 Score=26.35 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 003393 721 AMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN 771 (823)
Q Consensus 721 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 771 (823)
+.++|..|..+|+--. ...|...+..+...|++.+|.++|+..++.+-+|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666555433 33355555556666666666666666666555553
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=54.97 E-value=1.1e+02 Score=26.99 Aligned_cols=154 Identities=15% Similarity=0.042 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHH
Q 003393 630 PDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVI 709 (823)
Q Consensus 630 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 709 (823)
++...-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.|+.+ +...+.++.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3555555555555555542 33333333333 235555555555666666532 3333333332 34555555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003393 710 KGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYK 789 (823)
Q Consensus 710 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 789 (823)
.++.+.|+. ++...+.++.+ .++...-...+.++...|. .++...+..+.+ .++...-...+.++.+.|. .
T Consensus 103 ~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 666666652 34444444443 3555555555666666565 344555555543 3455555566666666665 4
Q ss_pred HHHHHHHHHhh
Q 003393 790 EAMDFLSKIKE 800 (823)
Q Consensus 790 ~A~~~~~~~~~ 800 (823)
++...+.++..
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 56666666654
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.85 E-value=1.1e+02 Score=29.26 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 003393 357 EVVGAYVRAGFYEEGAALIDTMS 379 (823)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~ 379 (823)
.++.-|...|+.++|.+.++++.
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcC
Confidence 44555555555666655555554
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.78 E-value=83 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 003393 721 AMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP 770 (823)
Q Consensus 721 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 770 (823)
+.++|..|..+|+--. ..-|......+...|++.+|.++++.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555544433 2334555555555566666666666655555554
No 284
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=49.50 E-value=1e+02 Score=29.62 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 758 EVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 758 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
++.--+...+++|. .-+...-+....|.+++..|..+.+++++..|.
T Consensus 182 ELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 182 EMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 33333334444442 223344455566677777777777777776654
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.41 E-value=1.1e+02 Score=26.00 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003393 684 WKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI 737 (823)
Q Consensus 684 ~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 737 (823)
+.+.++|..|...|+.... ..|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4477788888887765444 45677777788888889998888888887777754
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.47 E-value=78 Score=28.72 Aligned_cols=83 Identities=11% Similarity=0.026 Sum_probs=38.0
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhH--HHHHHHHHHHcC
Q 003393 291 ACGREGLLNEAKEFFAGLKLEGYVPGTVT--YNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVT--YNEVVGAYVRAG 366 (823)
Q Consensus 291 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g 366 (823)
..+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34456777766666666555554433221 112344444555554 3333344444333211 112333344556
Q ss_pred CHHHHHHHHHH
Q 003393 367 FYEEGAALIDT 377 (823)
Q Consensus 367 ~~~~a~~~~~~ 377 (823)
+.+-+..+++.
T Consensus 91 ~~~~~~~Ll~~ 101 (241)
T 1k1a_A 91 SPTCLRALLDS 101 (241)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 65555544444
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.74 E-value=72 Score=25.87 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCC
Q 003393 213 AYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMG-RSWDRILGLLDEMRSRGL 278 (823)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~~a~~~~~~m~~~~~ 278 (823)
..+.++.-|...|+.++|.+.++++..-. -....+...+..++-+.+ ...+.+..++..+...|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34557777777778888877777764211 112333444444554432 212445556666655553
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.93 E-value=51 Score=30.94 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=8.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 003393 400 AGKVNKALRLLNKMKESGCA 419 (823)
Q Consensus 400 ~g~~~~A~~~~~~~~~~~~~ 419 (823)
.++.....++++.+.+.|..
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGAD 211 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHcCCC
Confidence 33333333444444444433
No 289
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.83 E-value=39 Score=32.53 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCC
Q 003393 320 YNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGF--YEEGAALIDTMSSKGLMP 385 (823)
Q Consensus 320 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p 385 (823)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+.+.|+-.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 456788899999999999999999631111 12233333344433322 355667788877766553
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.75 E-value=1.2e+02 Score=24.57 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 003393 357 EVVGAYVRAGFYEEGAALIDTMS 379 (823)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~ 379 (823)
.++.-|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 44555555556666655555553
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.20 E-value=1.1e+02 Score=28.03 Aligned_cols=91 Identities=10% Similarity=-0.049 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHc--CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003393 672 NLMDMYARAGKCWKAEEILKGILKS--GGTP----DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
--++.+....++++|.+++++..+. +.+. ........+..-.....-.-+..+.+++ .. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3477888888899998888877632 1221 1111122222222222223333344444 32 344555666667
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 003393 746 GYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~ 765 (823)
.+.+.|+-++|.++|-+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77888888888888777764
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.66 E-value=1e+02 Score=25.88 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCC
Q 003393 213 AYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMG-RSWDRILGLLDEMRSRGL 278 (823)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~~a~~~~~~m~~~~~ 278 (823)
..+.++.-|...|+.++|.+.++++..-. -....+...+..++-+.+ ...+.+..++..+...++
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34567777777788888887777774211 112333444444554432 213445556666655553
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.64 E-value=1.8e+02 Score=26.58 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=15.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 003393 289 ISACGREGLLNEAKEFFAGLKL 310 (823)
Q Consensus 289 l~~~~~~g~~~~A~~~~~~~~~ 310 (823)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5567777888888888776654
No 294
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=38.30 E-value=2.4e+02 Score=26.03 Aligned_cols=54 Identities=6% Similarity=-0.025 Sum_probs=30.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHH
Q 003393 606 VNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK-NSMYDRANEMLHLIL 659 (823)
Q Consensus 606 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~ 659 (823)
..-++++++++....+.+.+.+...+..-.|.|-.+|-. .|....+++++..+.
T Consensus 40 LaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 40 LAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 334556666666666666666666666666655555543 344455555554443
No 295
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.63 E-value=3.5e+02 Score=27.63 Aligned_cols=138 Identities=9% Similarity=0.030 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHHHH
Q 003393 612 ALQGMERAFQELQKH--------GYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGM-Q---PNLVTYNNLMDMYAR 679 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~ 679 (823)
..++...+++..... +...+......++.. ..|+..+++.+++.+..... . ....+...
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~------- 236 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPEL------- 236 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH-------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHH-------
Confidence 345556666665543 233455566666554 46788888888877765321 0 01122222
Q ss_pred cCCHhHHHHHHHHHHHcC---CCCChhHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 003393 680 AGKCWKAEEILKGILKSG---GTPDLVSYNTVIKGF---CRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMF 753 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 753 (823)
++++.... ...+...+..++.++ .+.++.+.|+.++.+|++.|..|....-..+..+...-|.-
T Consensus 237 ----------v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 237 ----------LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp ----------HHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred ----------HHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 22222110 011111222233333 34578899999999999988877665555556566555542
Q ss_pred -----hHHHHHHHHHHhCCC
Q 003393 754 -----TEIDEVIKHMFQHNC 768 (823)
Q Consensus 754 -----~~A~~~~~~~~~~~~ 768 (823)
.-|...++.....|.
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCH
T ss_pred ChhHHHHHHHHHHHHHHhCC
Confidence 334444444444553
No 296
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.39 E-value=2.5e+02 Score=29.18 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCH--HHH-HHHHHHHHHcCCHhHHHHHHHHHHH
Q 003393 633 VIFNSMLSICAKNSMYDRANEMLHLILESGM-QPNL--VTY-NNLMDMYARAGKCWKAEEILKGILK 695 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 695 (823)
..+|.++..|...+.++.|..+.....--.. .++. ..| ..++..+.-.+++.+|.+.+....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4556666666666666666666665532100 0011 111 1233444555666666666665554
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.07 E-value=1.1e+02 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=14.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003393 218 LHAYSKAGKYEKAISLFEKVKEMGLS 243 (823)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~g~~ 243 (823)
+...++.|+.+....+++.+.+.|..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34445566666666666655554443
No 298
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.85 E-value=1.1e+02 Score=28.43 Aligned_cols=11 Identities=0% Similarity=-0.070 Sum_probs=4.8
Q ss_pred HHccCCHHHHH
Q 003393 292 CGREGLLNEAK 302 (823)
Q Consensus 292 ~~~~g~~~~A~ 302 (823)
.++.|+.+...
T Consensus 12 A~~~g~~~~v~ 22 (285)
T 1wdy_A 12 AVQNEDVDLVQ 22 (285)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 34445544333
No 299
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.83 E-value=3.4e+02 Score=26.72 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 003393 320 YNSLLQVFGKAGVYSEALSILKEME 344 (823)
Q Consensus 320 ~~~li~~~~~~~~~~~A~~~~~~m~ 344 (823)
...++.-|...|+.++|.+.++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3456666666677777777776664
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.67 E-value=1.1e+02 Score=25.57 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003393 356 NEVVGAYVRAGFYEEGAALIDTMS 379 (823)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~~~ 379 (823)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666666553
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.53 E-value=1.3e+02 Score=26.25 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=8.4
Q ss_pred hccCChHHHHHHHhh
Q 003393 187 GKESRHSIASKLLDL 201 (823)
Q Consensus 187 ~~~~~~~~a~~~~~~ 201 (823)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 345566666666554
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.75 E-value=1.3e+02 Score=26.19 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=16.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003393 217 ILHAYSKAGKYEKAISLFEKVKEMGLSPTL 246 (823)
Q Consensus 217 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 246 (823)
.+...+..|..+.-.++.+.+.+.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 344445555555555556666666655543
No 303
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.69 E-value=48 Score=21.72 Aligned_cols=38 Identities=11% Similarity=0.364 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHh
Q 003393 757 DEVIKHMFQHNCKPNELTYKIVVDGYCKARK--YKEAMDFLSKIK 799 (823)
Q Consensus 757 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~ 799 (823)
.+.++.+++.|+..+. ...++.+.|. ++.|++|+.+|-
T Consensus 10 ~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 10 RQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhc
Confidence 3445555555655432 2335555565 777777777764
No 304
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.17 E-value=1.5e+02 Score=25.65 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=6.1
Q ss_pred HHHHHHHHHCCCCC
Q 003393 407 LRLLNKMKESGCAP 420 (823)
Q Consensus 407 ~~~~~~~~~~~~~~ 420 (823)
.++.+.+.+.|..+
T Consensus 94 ~~iv~~Ll~~Gadi 107 (186)
T 3t8k_A 94 TELCKIFLEKGADI 107 (186)
T ss_dssp HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444444433
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=31.14 E-value=74 Score=28.66 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 003393 720 EAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP 770 (823)
Q Consensus 720 ~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 770 (823)
++..+|..|..+||--. ...|......+...|++.+|.++|+.-++.+-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34445555554444332 2234444444445555555555555555444444
No 306
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.74 E-value=2.8e+02 Score=24.41 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 003393 715 QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGM 752 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 752 (823)
-.+.+.|+-++.+|++.| .|.-..-..++-+...-|.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 345555666666666655 4443333444444444443
No 307
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=30.53 E-value=2.2e+02 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=12.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 003393 744 VSGYAGQGMFTEIDEVIKHMFQHNCKPN 771 (823)
Q Consensus 744 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 771 (823)
+....+.+++++..+..+++.+.+.+.+
T Consensus 38 AKLaeqaeRYddMv~~MK~v~~~~~eLt 65 (261)
T 3ubw_A 38 AKLAEQAERYDEMVESMKKVAGMDVELT 65 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcCC
Confidence 3334444555555555555544443333
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.47 E-value=66 Score=29.10 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHhcCCHHHHHHHH
Q 003393 292 CGREGLLNEAKEFFAGLKLEGYVPGTV--TYNSLLQVFGKAGVYSEALSIL 340 (823)
Q Consensus 292 ~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~~~~~~A~~~~ 340 (823)
.++.|+.+....+++ .|..++.. .-.+.+...++.|+.+-+..++
T Consensus 16 A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 16 ATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 345666655544443 33333221 1123445556666665443333
No 309
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.08 E-value=1e+02 Score=26.90 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=7.2
Q ss_pred HccCCHHHHHHHHH
Q 003393 293 GREGLLNEAKEFFA 306 (823)
Q Consensus 293 ~~~g~~~~A~~~~~ 306 (823)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34556555555443
No 310
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=29.55 E-value=2.1e+02 Score=25.43 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHH--HH-----HHHHHHHHcCCChhHHHHHHHHHHh
Q 003393 718 MQEAMRMLYEMTNRGIRPCIF--TY-----NTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
++.|+.+|+.+.+.--.++.. .. -..+-.|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 788999999988752212211 11 2334578888889999998888875
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.46 E-value=1.4e+02 Score=31.09 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCC--HHH-HHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003393 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQH-NCKPN--ELT-YKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~--~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
.+|.+++.|...+.++.|.++..+..-- .-.+| ... +..+++.+.-.+++.+|.+.+..+..+.|.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3455555666666666666665555310 00011 111 233455555566666666666666655544
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.22 E-value=20 Score=33.60 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=14.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC
Q 003393 292 CGREGLLNEAKEFFAGLKLEGYVPG 316 (823)
Q Consensus 292 ~~~~g~~~~A~~~~~~~~~~g~~~~ 316 (823)
.++.|+.+....+++.+.+.|...+
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 4455666666666665555544333
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.70 E-value=3.6e+02 Score=30.99 Aligned_cols=123 Identities=9% Similarity=0.096 Sum_probs=73.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 003393 673 LMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGM 752 (823)
Q Consensus 673 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 752 (823)
++..+...|..+-|.++..- .+.+...--.++.+|...|++++|...|+++. .|+..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------c
Confidence 56667778877766553321 23355444457788889999999999998764 23432211100 0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003393 753 FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRL 813 (823)
Q Consensus 753 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 813 (823)
.+....++. ..+. ......-|.+++..+-+.|-++-+.++.+.+++.-..+++.....+
T Consensus 880 ~~~~~~ll~-~~e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l 938 (950)
T 4gq2_M 880 LREFQEIAE-KYHH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAI 938 (950)
T ss_dssp GHHHHHHHH-HTTT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHH
T ss_pred hhhhhhccC-cccc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHH
Confidence 011111111 1110 1112346889999999999999999999999976665666544433
No 314
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=28.37 E-value=2e+02 Score=21.98 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHH--HHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 003393 151 GYRERALLLFEWLAVNSSFENGKLDKEVIQLMV--RILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYE 228 (823)
Q Consensus 151 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 228 (823)
...++|.-+-+|....+ + .-...+| ..+..+|+|.+|..+.+... .||...|-.|-. .|.|..+
T Consensus 20 H~HqEA~tIAdwL~~~~-------~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s 85 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG-------Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGA 85 (115)
T ss_dssp TCHHHHHHHHHHHHHTT-------C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHH
T ss_pred hHHHHHHHHHHHHHhCC-------c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHH
Confidence 36678888889987752 2 2333344 45668999999998888766 567777776644 4789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHH
Q 003393 229 KAISLFEKVKEMGLSPTLVTY 249 (823)
Q Consensus 229 ~A~~~~~~m~~~g~~~~~~~~ 249 (823)
++...+.++...| +|....|
T Consensus 86 ~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 86 ALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHH
Confidence 9999888888765 4444444
No 315
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=27.91 E-value=2e+02 Score=21.96 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHH--HHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHH
Q 003393 151 GYRERALLLFEWLAVNSSFENGKLDKEVIQLMV--RILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYE 228 (823)
Q Consensus 151 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 228 (823)
...++|.-+-+|....+ + .-...+| ..+..+|+|.+|..+.+... .||...|-.|-. .|.|..+
T Consensus 21 H~HqEA~tIAdwL~~~~-------~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s 86 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG-------E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGS 86 (116)
T ss_dssp TCHHHHHHHHHHHHHTT-------C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHH
T ss_pred hHHHHHHHHHHHHHhCC-------c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHH
Confidence 36688888899987752 2 2333344 45668999999999998876 467777776644 4778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHH
Q 003393 229 KAISLFEKVKEMGLSPTLVTY 249 (823)
Q Consensus 229 ~A~~~~~~m~~~g~~~~~~~~ 249 (823)
++...+.++...| +|....|
T Consensus 87 ~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 87 ALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHHHHHHHhCC-CHHHHHH
Confidence 9988888887765 4444444
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=27.39 E-value=3.2e+02 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=10.4
Q ss_pred CCHhHHHHHHHHHHHcCCCCC
Q 003393 681 GKCWKAEEILKGILKSGGTPD 701 (823)
Q Consensus 681 g~~~~A~~~~~~~~~~~~~~~ 701 (823)
.+.+.|+-.+-+|++.|..|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555443333
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.29 E-value=1.4e+02 Score=29.19 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003393 215 TSILHAYSKAGKYEKAISLFEKVK 238 (823)
Q Consensus 215 ~~li~~~~~~g~~~~A~~~~~~m~ 238 (823)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 345556666666666666666553
No 318
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.20 E-value=5.7e+02 Score=26.88 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=41.8
Q ss_pred HHHHHHHHHH--ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003393 634 IFNSMLSICA--KNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKG 711 (823)
Q Consensus 634 ~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 711 (823)
.|..-+..+. ...+....+....+.+.+-.--+..-...++..|.+.|-.+.|.++++.+-.+-.. +...+ .-+..
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~ 558 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIAN 558 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHH
Confidence 3444444333 34455666777777776533336667778888899999999999998888654333 33344 34456
Q ss_pred HHhcCCHHHH
Q 003393 712 FCRQGLMQEA 721 (823)
Q Consensus 712 ~~~~g~~~~A 721 (823)
|.++|+++..
T Consensus 559 f~rA~~~~~V 568 (570)
T 3f3f_C 559 FSRAGKYELV 568 (570)
T ss_dssp ----------
T ss_pred HHHcCChhhc
Confidence 7888877654
No 319
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.05 E-value=2.5e+02 Score=27.04 Aligned_cols=289 Identities=14% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003393 180 QLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKM 259 (823)
Q Consensus 180 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 259 (823)
+..+..-++.|+.+.+..+++.-..-+...+..-++.|..+..... .++.+.+.+.|..++..............
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~-----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-----EDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC-----HHHHHHHHHcCCchhhhccCCCchhHHHH
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHH------------HHHHHH
Q 003393 260 GRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYN------------SLLQVF 327 (823)
Q Consensus 260 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~------------~li~~~ 327 (823)
..........+......--..+..-++.+..+..... .++...+.+.|..++..... +.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~-----~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK-----VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc-----HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 003393 328 GKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYT--TLIDAYGRAGKVNK 405 (823)
Q Consensus 328 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~ 405 (823)
++.|+.+-+..++++.-..--..|....+.+..+... +.......+.+.+.+.|..++..... +.+...+..|..+.
T Consensus 176 ~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~ 254 (337)
T 4g8k_A 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 254 (337)
T ss_dssp HHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHH
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003393 406 ALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKS 485 (823)
Q Consensus 406 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 485 (823)
+..+++.-...--..|..-.+.|..+..... .++.+.+++.|..+|..+ .+...+..|+.+ +.+.+++
T Consensus 255 v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~ 322 (337)
T 4g8k_A 255 VQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLS 322 (337)
T ss_dssp HHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHH
T ss_pred HHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHH
Q ss_pred CCCCCC
Q 003393 486 CGFEPD 491 (823)
Q Consensus 486 ~~~~~~ 491 (823)
.|-.+|
T Consensus 323 ~GA~~d 328 (337)
T 4g8k_A 323 HGAKED 328 (337)
T ss_dssp TTCCC-
T ss_pred CcCCCC
No 320
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=25.73 E-value=6.4e+02 Score=27.01 Aligned_cols=264 Identities=11% Similarity=0.055 Sum_probs=127.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 003393 356 NEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKK 435 (823)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 435 (823)
+..+..+.+.+++.....++.. ...+...-+....+....|+.++|....+.+-..|.. ....++.++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence 3445556666666655554332 1224555555566666777766666666555444321 233344444444433
Q ss_pred CCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 003393 436 GRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDR-DTFNTLISAYGRCGSGVDATKM 514 (823)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~ 514 (823)
|.+ .....+..+ ......|+...|..+...+ .++. .....++..+.+ ...+...
T Consensus 150 g~l----------------t~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~ 204 (618)
T 1qsa_A 150 GKQ----------------DPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTF 204 (618)
T ss_dssp TCS----------------CHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHH
T ss_pred CCC----------------CHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHH
Confidence 332 122222222 2334455555555554332 1222 222333333322 2222222
Q ss_pred HHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHccCChhHHHHHHHH
Q 003393 515 FEDMMKTGFTPCVT---TYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLN----CYAKGGNLKGIRKIEKE 587 (823)
Q Consensus 515 ~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~ 587 (823)
... ..++.. .+...+.-+.+ .+.+.|..++....... ..+......+-. .....+...++......
T Consensus 205 ~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~ 277 (618)
T 1qsa_A 205 ART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDD 277 (618)
T ss_dssp HHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH
T ss_pred Hhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHh
Confidence 211 112222 22222333333 47899999998886543 223333322222 33334423344444444
Q ss_pred HHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003393 588 IYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILE 660 (823)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 660 (823)
...... +.......+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+..
T Consensus 278 ~~~~~~--~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 278 AIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccccCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 433322 2223334444455678999999998887653211 233333455667788999999999888764
No 321
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.89 E-value=2.2e+02 Score=26.69 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 003393 395 DAYGRAGKVNKALRLLNK 412 (823)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~ 412 (823)
...+..|+.+-+..+++.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHc
Confidence 344455555554444443
No 322
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=24.32 E-value=2e+02 Score=23.06 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHcCCChhHHHHHHHHH---HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHh
Q 003393 746 GYAGQGMFTEIDEVIKHM---FQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS-FNDESVKRLTFRVREIL 821 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 821 (823)
.|...++.+..+++++.+ .+.| |....-...+..|.+ ++.+|.+++++-.+.+.. +-...|......++++-
T Consensus 49 lyf~~~n~~~m~~~L~pLh~~l~~~--PeT~~E~sF~~~fG~--~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~~Vf~rI~ 124 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPLHAMMERG--PQTLKETSFNQAYGR--DLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRIS 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHccC--CCCHHHHHHHHHHhH--HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHh
Confidence 345566666666666555 2322 333333334444443 567777777776643322 23456666666666554
Q ss_pred c
Q 003393 822 E 822 (823)
Q Consensus 822 ~ 822 (823)
+
T Consensus 125 k 125 (126)
T 2npu_A 125 K 125 (126)
T ss_dssp C
T ss_pred c
Confidence 4
No 323
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=24.14 E-value=4.1e+02 Score=24.16 Aligned_cols=163 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-
Q 003393 603 LILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK-NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARA- 680 (823)
Q Consensus 603 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 680 (823)
++...-++++++++....+.+.+.+...+..-.|.+-.+|-. .|....+++++..+.+..-.-.......++.-|.+.
T Consensus 14 ~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr~ki 93 (236)
T 3iqu_A 14 KAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKV 93 (236)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q ss_pred -CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHH---cCCCCCHHH
Q 003393 681 -GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLM-----------------QEAMRMLYEMTN---RGIRPCIFT 739 (823)
Q Consensus 681 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~m~~---~~~~p~~~~ 739 (823)
.++..-..-.-.++...+-|+..+-.+-+-.+--.|++ +.|.+.|++..+ ..++|...+
T Consensus 94 e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPi 173 (236)
T 3iqu_A 94 ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPI 173 (236)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcH
Q ss_pred HHHHHHHHH-----cCCChhHHHHHHHHHHh
Q 003393 740 YNTFVSGYA-----GQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 740 ~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 765 (823)
...|+--|+ -.++.++|.++.+++.+
T Consensus 174 rLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 174 RLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 324
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=23.54 E-value=2e+02 Score=22.75 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhH
Q 003393 683 CWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN-RGIRPCIFTYNTFVSGYAGQGMFTE 755 (823)
Q Consensus 683 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~ 755 (823)
+.+|+.-+++..+. ..|......++..+... ++.|+++.+...+ .|+ +..++...+..+.+.|-+++
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~ 71 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPE 71 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCc
Confidence 34444444444332 23333333444333322 3444444444443 344 23344444444444444433
No 325
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=23.27 E-value=3.7e+02 Score=23.40 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHcCC
Q 003393 529 TYNAFLNALARRGD 542 (823)
Q Consensus 529 ~~~~li~~~~~~g~ 542 (823)
+-...+.++.+.+.
T Consensus 159 vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 159 VRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCc
Confidence 33333334444333
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.96 E-value=3.4e+02 Score=22.89 Aligned_cols=51 Identities=12% Similarity=-0.002 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H---H--HcCCChhHHHHHHHHHHh
Q 003393 715 QGLMQEAMRMLYEMTNRGIRP--CIFTYNTFVS-G---Y--AGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~-~---~--~~~g~~~~A~~~~~~~~~ 765 (823)
.|++=+|-++|+..-...-.+ +...|..||. + + .+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666666665543333 3344554444 1 1 235666666666666654
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.93 E-value=4.5e+02 Score=30.12 Aligned_cols=131 Identities=8% Similarity=0.023 Sum_probs=76.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003393 638 MLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL 717 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 717 (823)
++..+...|.++-|.++. . -.+-+...-..++.+|...|++++|...|+++. .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~---------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV---------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------
Confidence 566677788887665543 2 122355444567888999999999999999874 333322111000
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 003393 718 MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNE----LTYKIVVDGYCKAR 786 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 786 (823)
.+....++... +. .......|..++..+.+.+-++-++++.+.+++.--..|. ..|..+.++.+..|
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01111111111 10 1112236788888999999999999999999864211122 35666666666554
No 328
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.92 E-value=5.2e+02 Score=26.79 Aligned_cols=77 Identities=9% Similarity=-0.107 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003393 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC 783 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 783 (823)
...|++.......++.|...|.++... .|+ ...||.|+-.....|+.-+|.-.|-+.+.. ..|-......|...+.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 344556666667788999999988874 454 677888888777788887788777777643 3456666777766665
Q ss_pred h
Q 003393 784 K 784 (823)
Q Consensus 784 ~ 784 (823)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.70 E-value=2.8e+02 Score=23.00 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 003393 377 TMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKG 436 (823)
Q Consensus 377 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 436 (823)
.+.+.|+.. +..-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 17 ~l~~~g~r~-T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKN-SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--C-HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555553 33344455555555555566666666666554445554444444554444
No 330
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.69 E-value=6.2e+02 Score=25.74 Aligned_cols=38 Identities=8% Similarity=0.198 Sum_probs=22.2
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccC
Q 003393 434 KKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKG 471 (823)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 471 (823)
+.++.+.|+.++.+|.+.|..|....-..++.+....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34667777777777777766555444444444444433
No 331
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.66 E-value=1.9e+02 Score=27.20 Aligned_cols=18 Identities=6% Similarity=0.084 Sum_probs=8.1
Q ss_pred HHHHHccCCHHHHHHHHH
Q 003393 464 LTMCGNKGLDKYVNQVFR 481 (823)
Q Consensus 464 l~~~~~~~~~~~a~~~~~ 481 (823)
+...+..|+.+-+..+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 333444555554444443
No 332
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.65 E-value=3.3e+02 Score=25.19 Aligned_cols=24 Identities=8% Similarity=0.012 Sum_probs=11.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 003393 709 IKGFCRQGLMQEAMRMLYEMTNRG 732 (823)
Q Consensus 709 ~~~~~~~g~~~~A~~~~~~m~~~~ 732 (823)
+....+.+++++..+.++++.+.+
T Consensus 35 AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 35 AKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcc
Confidence 333444455555555555555433
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.61 E-value=92 Score=27.23 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=33.0
Q ss_pred hHHHHHHHhhcccCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003393 192 HSIASKLLDLIPLEKYSLDVR----AYTSILHAYSKAGKYEKAISLFEKVKE 239 (823)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~ 239 (823)
++.|..+|+.+.+.--.+... +-...+..|.+.|.+++|.++|++.-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 678999999998753211111 122335568999999999999999654
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.45 E-value=92 Score=21.03 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 003393 299 NEAKEFFAGLKLEGYVPGTVTYNSLLQVF 327 (823)
Q Consensus 299 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 327 (823)
++|.+.|.+|++..-.+...+|.-.|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34555555555443233444555555555
No 335
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.25 E-value=3.5e+02 Score=26.29 Aligned_cols=23 Identities=4% Similarity=-0.047 Sum_probs=12.8
Q ss_pred HHHHHHhccCChHHHHHHHhhcc
Q 003393 181 LMVRILGKESRHSIASKLLDLIP 203 (823)
Q Consensus 181 ~l~~~~~~~~~~~~a~~~~~~~~ 203 (823)
.++.-|...|+.++|...++.+.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34455555566666666665554
No 336
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.24 E-value=4.9e+02 Score=25.36 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 003393 708 VIKGFCRQG---LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ-----HNCKPNELTYKIVV 779 (823)
Q Consensus 708 l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 779 (823)
|++.+...| ++..|+.-+-++.+..-.|+... ++.+|.+++. ++-. ...-|..++
T Consensus 241 LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~----------------~l~L~~~AI~sa~~yY~n~-HvYPYtylg 303 (472)
T 3re2_A 241 LLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPP----------------AEELFKEAITVAKREYSDH-HIYPYTYLG 303 (472)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCC----------------HHHHHHHHHHHHHHHSTTC-CSHHHHHHH
T ss_pred HHHHHHhccchhhCchhhcchhhHHhcCCCCCCCC----------------HHHHHHHHHHHHHHHhccC-Cccchhhhh
Q ss_pred HHHHhcCChHHHHHHHHHHhh-----cCCCCCHHHHHHHHH
Q 003393 780 DGYCKARKYKEAMDFLSKIKE-----RDDSFNDESVKRLTF 815 (823)
Q Consensus 780 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 815 (823)
..+++.|++.||++.+-++-. .....++++|+.+..
T Consensus 304 Gy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 344 (472)
T 3re2_A 304 GYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHE 344 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
No 337
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=22.22 E-value=1.9e+02 Score=26.26 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=19.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003393 708 VIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
++....+.+++++..+.++++.+.+...+..--+.|..+|
T Consensus 11 ~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 11 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 3344444555555555555555544444444444444333
No 338
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.97 E-value=2.4e+02 Score=25.91 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=13.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 003393 744 VSGYAGQGMFTEIDEVIKHMFQHNCKPN 771 (823)
Q Consensus 744 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 771 (823)
+....+.+++++..+..+++.+.+...+
T Consensus 11 AklaeqaeRyddM~~~Mk~v~~~~~eLt 38 (248)
T 3uzd_A 11 ARLAEQAERYDDMAAAMKNVTELNEPLS 38 (248)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcCC
Confidence 3344445555555555555554444443
No 339
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.92 E-value=4.7e+02 Score=26.05 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 003393 708 VIKGFCRQG---LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ-----HNCKPNELTYKIVV 779 (823)
Q Consensus 708 l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 779 (823)
|++.+...| ++..|+.-+-++.+..-.|+... ++.+|.+++. ++-. ...-|..++
T Consensus 263 LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~----------------~~~L~~~AI~sa~~~Y~n~-HvYPYtYlg 325 (550)
T 3u84_A 263 LLWLLYDLGHLERYPMALGNLADLEELEPTPGRPD----------------PLTLYHKGIASAKTYYRDE-HIYPYMYLA 325 (550)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCC----------------HHHHHHHHHHHHHHHSTTC-CSHHHHHHH
T ss_pred HHHHHHhccchhhCchhhcchhhHhhcCCCCCCCC----------------HHHHHHHHHHHHHHHhccC-Cccceeecc
Q ss_pred HHHHhcCChHHHHHHHHHHhh-----cCCCCCHHHHHHHHH
Q 003393 780 DGYCKARKYKEAMDFLSKIKE-----RDDSFNDESVKRLTF 815 (823)
Q Consensus 780 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 815 (823)
..|++.+++.+|++.+-++-. .....++++|+.+..
T Consensus 326 Gy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~e 366 (550)
T 3u84_A 326 GYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFE 366 (550)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHH
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHH
No 340
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.62 E-value=4.3e+02 Score=23.47 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=24.9
Q ss_pred HHHHHHH---HcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003393 672 NLMDMYA---RAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG 716 (823)
Q Consensus 672 ~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 716 (823)
.+++++- +-.+.+.|+-.+-+|++.|..|....-..++-+.-.-|
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4445443 34567777777777776665555444444444444433
No 341
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.34 E-value=4.4e+02 Score=26.27 Aligned_cols=20 Identities=5% Similarity=-0.040 Sum_probs=10.8
Q ss_pred HHHHHcCCHhHHHHHHHHHH
Q 003393 675 DMYARAGKCWKAEEILKGIL 694 (823)
Q Consensus 675 ~~~~~~g~~~~A~~~~~~~~ 694 (823)
..+....+.++|.++++++.
T Consensus 84 ~~~~~~~d~~~al~~L~~~~ 103 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLK 103 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHhhcCCHHHHHHHHHHHH
Confidence 34445555666666665553
No 342
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.79 E-value=3.5e+02 Score=23.95 Aligned_cols=23 Identities=9% Similarity=-0.115 Sum_probs=11.7
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCC
Q 003393 431 MLGKKGRSEEMMKILCDMKSSGC 453 (823)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~ 453 (823)
..+..|+.+-+..+++.+.+.|.
T Consensus 160 ~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 160 ILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCC
Confidence 34455555555555555555443
No 343
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.47 E-value=3e+02 Score=25.48 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 003393 708 VIKGFCRQGLMQEAMRMLYEMTNRG--IRPCIFTYNTFVSGY 747 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~ 747 (823)
++....+.+++++....++++.+.+ ...+..--+.|..+|
T Consensus 14 ~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 14 MAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 3444455566666666666665544 344444444444333
No 344
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=20.35 E-value=9.7e+02 Score=27.15 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh
Q 003393 426 NAVLGMLGKKGRSEEMMKILCDMKS 450 (823)
Q Consensus 426 ~~li~~~~~~g~~~~a~~~~~~~~~ 450 (823)
..++.+++...+.+...++++....
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 3444455445555555555544443
No 345
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.20 E-value=1.5e+02 Score=22.15 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCChHHHHH
Q 003393 775 YKIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 775 ~~~l~~~~~~~g~~~~A~~ 793 (823)
+....+.+.+.|++++|++
T Consensus 18 ~~RrAe~ll~~gkydeAIe 36 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAIS 36 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHH
Confidence 3444555555566665544
No 346
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=20.19 E-value=5e+02 Score=23.67 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Q 003393 353 VTYNEVVGAYVRAGFYEEGAALIDT 377 (823)
Q Consensus 353 ~~~~~li~~~~~~g~~~~a~~~~~~ 377 (823)
.++.-++..+.+...+-++...|+.
T Consensus 230 Is~~Ef~~~~~~~~~l~~~l~~~d~ 254 (256)
T 2jul_A 230 VTIDEFLETCQKDENIMNSMQLFEN 254 (256)
T ss_dssp BCHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred EeHHHHHHHHHhCHHHHHHHHhhcc
Confidence 3445555555555555555544443
Done!