Query 003394
Match_columns 823
No_of_seqs 134 out of 190
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 22:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2072 Translation initiation 100.0 4E-234 8E-239 1956.2 89.0 799 1-819 1-826 (988)
2 PF01399 PCI: PCI domain; Int 99.0 4.4E-09 9.6E-14 95.2 11.3 74 436-510 32-105 (105)
3 smart00088 PINT motif in prote 98.9 1.1E-08 2.4E-13 91.2 9.6 86 441-530 1-86 (88)
4 smart00753 PAM PCI/PINT associ 98.9 1.1E-08 2.4E-13 91.2 9.6 86 441-530 1-86 (88)
5 KOG2072 Translation initiation 98.1 0.025 5.4E-07 68.2 38.5 58 408-478 435-493 (988)
6 PTZ00121 MAEBL; Provisional 97.8 0.017 3.6E-07 72.7 29.8 17 375-391 814-830 (2084)
7 PTZ00121 MAEBL; Provisional 97.1 0.65 1.4E-05 59.4 31.0 14 20-33 355-368 (2084)
8 KOG1029 Endocytic adaptor prot 95.8 7 0.00015 47.9 29.7 20 546-565 318-337 (1118)
9 KOG1498 26S proteasome regulat 95.5 0.82 1.8E-05 52.0 18.0 134 370-536 286-420 (439)
10 KOG2581 26S proteasome regulat 94.5 8.5 0.00018 44.3 22.6 69 440-508 353-421 (493)
11 COG5071 RPN5 26S proteasome re 92.8 0.47 1E-05 52.3 8.7 92 440-536 329-420 (439)
12 KOG0163 Myosin class VI heavy 92.4 13 0.00029 45.5 20.5 23 517-539 865-887 (1259)
13 KOG1144 Translation initiation 90.0 3 6.6E-05 50.9 12.3 61 559-619 217-277 (1064)
14 PF10075 PCI_Csn8: COP9 signal 89.0 1 2.3E-05 43.9 6.6 52 436-488 69-120 (143)
15 PTZ00266 NIMA-related protein 88.0 5.6 0.00012 50.8 13.5 10 122-131 150-159 (1021)
16 KOG2753 Uncharacterized conser 87.9 24 0.00052 39.8 16.6 248 235-511 49-340 (378)
17 KOG0163 Myosin class VI heavy 87.2 22 0.00048 43.7 16.8 24 515-538 891-914 (1259)
18 KOG2582 COP9 signalosome, subu 87.1 3.1 6.7E-05 47.1 9.3 64 447-513 300-363 (422)
19 KOG1497 COP9 signalosome, subu 86.9 60 0.0013 36.7 22.9 268 168-510 92-362 (399)
20 KOG1029 Endocytic adaptor prot 83.0 1.4E+02 0.0029 37.5 30.7 18 750-767 564-581 (1118)
21 KOG1076 Translation initiation 83.0 1.3E+02 0.0028 37.3 22.8 254 163-511 482-764 (843)
22 KOG1464 COP9 signalosome, subu 82.9 15 0.00032 40.6 11.8 78 435-513 335-412 (440)
23 KOG1144 Translation initiation 75.6 11 0.00025 46.2 9.0 62 564-628 216-277 (1064)
24 KOG4661 Hsp27-ERE-TATA-binding 72.5 44 0.00096 40.0 12.4 24 552-575 596-619 (940)
25 KOG2412 Nuclear-export-signal 71.2 59 0.0013 38.9 13.1 21 434-454 85-105 (591)
26 PF07946 DUF1682: Protein of u 66.2 43 0.00093 37.5 10.5 25 451-475 181-205 (321)
27 KOG2758 Translation initiation 65.6 2.5E+02 0.0054 32.1 22.3 60 454-514 339-398 (432)
28 KOG3054 Uncharacterized conser 64.7 95 0.0021 33.8 12.0 68 602-675 143-213 (299)
29 KOG4364 Chromatin assembly fac 62.4 2E+02 0.0044 35.4 15.3 32 791-822 340-375 (811)
30 KOG3654 Uncharacterized CH dom 62.0 46 0.00099 39.3 9.7 44 564-607 390-433 (708)
31 KOG3462 Predicted membrane pro 61.3 17 0.00038 33.7 5.1 61 271-331 30-91 (105)
32 KOG2412 Nuclear-export-signal 60.2 1.3E+02 0.0029 36.0 13.2 17 450-466 133-149 (591)
33 COG5159 RPN6 26S proteasome re 57.4 61 0.0013 36.3 9.3 126 373-514 261-392 (421)
34 PRK09550 mtnK methylthioribose 51.1 81 0.0018 36.6 9.7 121 126-264 264-397 (401)
35 KOG3054 Uncharacterized conser 50.2 80 0.0017 34.3 8.6 18 802-819 158-175 (299)
36 KOG0687 26S proteasome regulat 49.7 3E+02 0.0064 31.6 13.1 69 437-510 294-362 (393)
37 PRK13454 F0F1 ATP synthase sub 49.6 3.1E+02 0.0067 28.2 16.0 69 495-564 11-81 (181)
38 KOG2002 TPR-containing nuclear 47.9 1.1E+02 0.0024 39.0 10.5 13 611-623 863-875 (1018)
39 KOG1463 26S proteasome regulat 47.7 2E+02 0.0043 33.0 11.5 125 374-512 265-392 (411)
40 PRK00409 recombination and DNA 46.8 5.4E+02 0.012 32.6 16.5 33 550-582 518-550 (782)
41 PF07946 DUF1682: Protein of u 46.0 90 0.0019 35.0 8.8 21 755-775 257-277 (321)
42 PRK09510 tolA cell envelope in 45.4 4.5E+02 0.0098 30.6 14.3 6 535-540 54-59 (387)
43 KOG0686 COP9 signalosome, subu 43.4 1.2E+02 0.0026 35.4 9.2 76 436-512 337-412 (466)
44 KOG2891 Surface glycoprotein [ 40.0 5.7E+02 0.012 28.5 15.1 110 582-711 321-431 (445)
45 KOG3654 Uncharacterized CH dom 36.9 1.4E+02 0.003 35.6 8.5 49 573-622 409-460 (708)
46 KOG4661 Hsp27-ERE-TATA-binding 34.9 2.7E+02 0.0058 33.8 10.4 17 675-691 736-752 (940)
47 KOG2688 Transcription-associat 34.5 78 0.0017 36.7 6.1 69 446-514 312-389 (394)
48 KOG3634 Troponin [Cytoskeleton 33.7 2.2E+02 0.0047 32.4 9.0 34 748-781 85-118 (361)
49 PF14561 TPR_20: Tetratricopep 33.6 1.1E+02 0.0023 28.0 5.7 49 7-57 22-71 (90)
50 PF11728 DUF939_C: DUF939 C-te 33.4 5.3E+02 0.012 26.2 12.2 111 196-322 40-151 (167)
51 KOG4848 Extracellular matrix-a 33.4 6.1E+02 0.013 26.9 13.3 57 718-774 143-199 (225)
52 PF13076 DUF3940: Protein of u 31.3 48 0.0011 26.0 2.6 24 374-400 3-26 (38)
53 PF11817 Foie-gras_1: Foie gra 31.3 75 0.0016 34.0 5.1 47 10-56 181-227 (247)
54 KOG2908 26S proteasome regulat 31.3 8.7E+02 0.019 28.1 27.6 234 243-536 127-364 (380)
55 TIGR01767 MTRK 5-methylthiorib 31.1 3.6E+02 0.0078 31.2 10.6 119 127-263 234-367 (370)
56 KOG4414 COP9 signalosome, subu 31.1 84 0.0018 31.8 4.9 47 441-488 109-155 (197)
57 COG4857 Predicted kinase [Gene 30.9 3E+02 0.0065 31.2 9.5 118 127-263 270-404 (408)
58 PF05672 MAP7: MAP7 (E-MAP-115 30.0 6.5E+02 0.014 26.2 17.0 34 666-701 118-151 (171)
59 PRK00247 putative inner membra 29.7 5.5E+02 0.012 30.3 11.9 13 474-486 141-153 (429)
60 PRK00247 putative inner membra 29.5 9.3E+02 0.02 28.5 13.7 18 392-411 89-106 (429)
61 PF03669 UPF0139: Uncharacteri 29.4 84 0.0018 29.8 4.4 59 272-330 30-89 (103)
62 PF13428 TPR_14: Tetratricopep 29.3 82 0.0018 24.3 3.7 30 7-36 1-30 (44)
63 CHL00019 atpF ATP synthase CF0 29.2 6.3E+02 0.014 25.8 19.8 51 514-564 23-74 (184)
64 KOG2002 TPR-containing nuclear 28.7 4.3E+02 0.0093 34.2 11.3 18 615-632 860-877 (1018)
65 PF10187 Nefa_Nip30_N: N-termi 28.4 1.9E+02 0.0041 27.4 6.5 63 714-777 36-98 (102)
66 TIGR01069 mutS2 MutS2 family p 28.2 1.3E+03 0.027 29.4 15.6 32 550-581 513-544 (771)
67 PF14559 TPR_19: Tetratricopep 28.1 59 0.0013 26.6 2.9 54 17-76 1-54 (68)
68 KOG4673 Transcription factor T 27.2 1.3E+03 0.029 28.9 30.0 15 143-157 63-77 (961)
69 COG3124 Uncharacterized protei 27.1 2E+02 0.0043 29.6 6.8 54 233-286 118-179 (193)
70 TIGR02838 spore_V_AC stage V s 26.4 1.2E+02 0.0025 30.5 5.0 57 265-329 9-67 (141)
71 PF12169 DNA_pol3_gamma3: DNA 26.2 5.1E+02 0.011 24.7 9.5 120 354-492 6-130 (143)
72 COG3556 Predicted membrane pro 25.7 79 0.0017 31.3 3.6 35 276-333 56-97 (150)
73 PF05262 Borrelia_P83: Borreli 24.7 1.3E+03 0.028 27.8 18.3 35 437-472 104-138 (489)
74 PLN03086 PRLI-interacting fact 24.5 3.5E+02 0.0076 33.0 9.4 7 633-639 63-69 (567)
75 KOG4001 Axonemal dynein light 23.2 6.7E+02 0.015 26.8 9.9 60 557-629 183-242 (259)
76 CHL00119 atpD ATP synthase CF1 22.8 7.3E+02 0.016 25.3 10.3 150 374-533 13-183 (184)
77 PF13170 DUF4003: Protein of u 22.7 1E+03 0.022 26.5 12.1 53 272-327 80-150 (297)
78 PRK00409 recombination and DNA 22.7 1.7E+03 0.036 28.4 15.2 12 231-242 232-243 (782)
79 TIGR01069 mutS2 MutS2 family p 21.4 1.7E+03 0.038 28.2 15.4 14 230-243 226-239 (771)
80 TIGR03504 FimV_Cterm FimV C-te 20.5 1.3E+02 0.0028 24.2 3.4 27 11-37 3-29 (44)
No 1
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-234 Score=1956.20 Aligned_cols=799 Identities=49% Similarity=0.776 Sum_probs=763.2
Q ss_pred CCC-CCCchhHHHhHHHHHhcCChHHHHHHHHHHHhCCcccchhhhHHHHHHHHHHHhhhcccccchhhHHHHHHHhhcc
Q 003394 1 MST-YAKPEAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQQ 79 (823)
Q Consensus 1 M~~-~~kPEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~~E~Im~~~ieLCVel~kg~~aKdgL~QYr~~~Q~ 79 (823)
||+ |+|||||||||+|||+||++++|||+|||+|++||+|+|+++||||||+|++|||+|+||++||||||||||+||+
T Consensus 1 Ma~y~~kPENALKRAdElI~VGkkq~ALqsLhd~i~~kr~r~~q~~~EpIMfKyleLCVdLkKg~lAKdGL~QYk~~~Qq 80 (988)
T KOG2072|consen 1 MAPYFQKPENALKRADELIEVGKKQDALQSLHDTITAKRHRWWQTVLEPIMFKYLELCVDLKKGHLAKDGLFQYKNLCQQ 80 (988)
T ss_pred CCCCCCCcHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 665 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChhHHHHHhhcCccccCccccccchhHHHHHHHHHH
Q 003394 80 VNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYR 159 (823)
Q Consensus 80 ~nv~Sle~Vi~~fl~lae~K~~~Aq~ka~~~~~~~~~dDLE~~~TPE~lLLsavs~e~~~dRtdr~~vtPwlkFLWEsYR 159 (823)
+||.|||+||+|||+|||+|++.||.+|++++.++++||||++.||||||||+|||++++|||||++|||||||||||||
T Consensus 81 vnv~SlE~VvrhflklAe~kte~Aq~qad~l~~ve~vdDLe~~~tPEslllSvVsGe~sqdR~DR~lltPWlkFLWeSYR 160 (988)
T KOG2072|consen 81 VNVKSLENVVRHFLKLAEEKTEAAQEQADELQKVEEVDDLEAGVTPESLLLSVVSGEDSQDRSDRELLTPWLKFLWESYR 160 (988)
T ss_pred hchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCChHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhhhHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 003394 160 TVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLK 239 (823)
Q Consensus 160 ~vLdiLRnN~kLE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~ 239 (823)
+||||||||++||.+||+||++||+||+||+||||||||||+||+||++++||+++++.||||||||+|+||||||.||+
T Consensus 161 ~vLdlLRNNa~lE~lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~~v~Ln~~Etlql~LDtRf~QLd 240 (988)
T KOG2072|consen 161 TVLDLLRNNARLEALYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQSTRVDLNDPETLQLYLDTRFQQLD 240 (988)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHH
Q 003394 240 VATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLI 319 (823)
Q Consensus 240 ~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~ 319 (823)
|||+||||||||||||||||||++||+||||++|+|||+||++|||+|||+||||+||+|||.|+|++|||+|++|++.|
T Consensus 241 vAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K~~Tqde~q~~ 320 (988)
T KOG2072|consen 241 VAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNKNLTQDELQRM 320 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCC-CCCccchhhhhhh-HhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHH
Q 003394 320 ASSVVLAALLVVPYD-RSRSASHLELENE-KDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDL 397 (823)
Q Consensus 320 AS~vlLAaLsIP~~~-~~~~~~~~~~d~~-~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~L 397 (823)
||+|||||||||+++ ++.++..++.|.. ++|+.|||+||||+.+ |||.+||+++++.||+++|+++|++|
T Consensus 321 as~VlLaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~--------PTR~~ll~e~v~~gV~~~v~qe~kdL 392 (988)
T KOG2072|consen 321 ASRVLLAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAP--------PTRKGLLKEAVREGVLSKVDQEVKDL 392 (988)
T ss_pred HHHHHHHHhcCCCCCcccccccccccccchhhHHHHHHHHhCCCCC--------ccHHHHHHHHHHhccHhhhhHHHHHH
Confidence 999999999999754 5555556666655 9999999999999987 99999999999999999999999999
Q ss_pred HHHHhhcCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCC
Q 003394 398 YNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFF 477 (823)
Q Consensus 398 Y~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~ 477 (823)
|+|||++||||+||++|+|+|.+|+. .|+.+|||+||++||++|+|+|+||||+||++++|++|+||+
T Consensus 393 Y~iLEveF~PL~l~k~lq~ll~~ls~------------~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~ 460 (988)
T KOG2072|consen 393 YNILEVEFHPLKLCKKLQPLLDKLSE------------SPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFF 460 (988)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHc------------CCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 99999999999999999999999998 478899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC----------------CCchhHhhHHHHHHHHHHHHHhhhCCChh
Q 003394 478 DFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG----------------LESDGLRDHLTIFAQSLNKVRALIYPPAN 541 (823)
Q Consensus 478 s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~----------------~~s~~ir~qL~~la~~L~~a~~~i~p~~~ 541 (823)
++++||++||+|+++|+|+|+|||.+|||+||+|. ++|+.||+||+.||.+|..++.++||...
T Consensus 461 ~~~~lEk~~v~a~k~~~v~iriDH~~~~v~FgsDl~~s~~~~~~eg~~lqs~~sE~ir~~L~~m~~~L~~~~e~~dp~~~ 540 (988)
T KOG2072|consen 461 SAFELEKLLVEAAKHNDVSIRIDHESNSVSFGSDLFLSKEEDEPEGPELQSMPSEGIRSQLTAMAESLSKVVEELDPVII 540 (988)
T ss_pred CHHHHHHHHHHHHhccceeEEeccccceeeeccccccccccccCCCchhhcCchHhHHHHHHHHHHHHHHHHHhhChHHH
Confidence 99999999999999999999999999999999874 46889999999999999999999999743
Q ss_pred h---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 542 K---ASKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQ 618 (823)
Q Consensus 542 ~---~~~~~~~~~~~~~~~~~eh~~~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~e 618 (823)
. .+....++.++..+.+.||+++++|+++||+|||.+|+++.+++++++.++...+++.+++|++|+.+|..+|+.+
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 5667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-h-ccCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 003394 619 RILREIEERELEEAQALLEEAEKRN-K-KKGGKKPILEGEKVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAK 696 (823)
Q Consensus 619 r~~~E~e~~~~~e~~~~l~~~~k~~-~-~~~~~~~~~~~~~ld~~~l~~~~~~~~~Kek~E~~~kl~~~~Kr~DhleRA~ 696 (823)
|+++|++.|+.+++++.+..|+.|. | ++|.++|++++++||+|.|+++++++++|+++||+.||+.++|+|||+|||+
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999998764 4 4556789999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 697 REEAAPLIDAAFQQRLEEEKVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVEREER 776 (823)
Q Consensus 697 R~eE~pll~~~~e~~~~~d~~~~e~~~~~~~~~ak~~he~~l~~k~rL~r~~~d~~~f~~~i~~~R~~ef~~~~~e~~~r 776 (823)
|+|||||++++|.+++++|+++|+.+++++++.+.++|+.+|++|+||++|++|+..|++.|...|+.+|++....++++
T Consensus 701 R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~ 780 (988)
T KOG2072|consen 701 RLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEAR 780 (988)
T ss_pred HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 003394 777 ISL---IIKARKQEREAKRKKIFYVRTEEEKIKRLREEEEARKREG 819 (823)
Q Consensus 777 l~~---~~~~r~~er~~~Rr~~~~~~~eEer~~~~~eeee~~~~~e 819 (823)
|+. +.++|+.+|..+||.+++++.||++.+++.|+..+.+.++
T Consensus 781 leaer~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~~ae~~ee 826 (988)
T KOG2072|consen 781 LEAERNRLAERKRARIEERKQAYYREIEEERARREEEEANAERQEE 826 (988)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 995 4567777788888889999999988555555444444443
No 2
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=98.98 E-value=4.4e-09 Score=95.17 Aligned_cols=74 Identities=28% Similarity=0.512 Sum_probs=68.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003394 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 436 ~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
++.+..|++.|...+..+.|.+++++|++|+++.+.+.+.+ +..++|.+|++++.+|.|..+|||.+|+|+|+.
T Consensus 32 ~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~-~~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 32 DPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQL-SEEEVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhcc-chHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 57889999999999999999999999999999999999865 459999999999999999999999999999974
No 3
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=98.87 E-value=1.1e-08 Score=91.18 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHhh
Q 003394 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRD 520 (823)
Q Consensus 441 ~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~ 520 (823)
+|+++|.+.+..+.|.++++.|++|+++.+.+.++++. .++|.+|++++..|.|..+|||.+|+|+|+.++-.. .+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~-~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~---~~ 76 (88)
T smart00088 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSV-PEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR---SE 76 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCH-HHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh---hh
Confidence 48899999999999999999999999999999987654 479999999999999999999999999999765543 56
Q ss_pred HHHHHHHHHH
Q 003394 521 HLTIFAQSLN 530 (823)
Q Consensus 521 qL~~la~~L~ 530 (823)
+++.+...|.
T Consensus 77 ~~~~~~~~l~ 86 (88)
T smart00088 77 PLAQFAETLK 86 (88)
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 4
>smart00753 PAM PCI/PINT associated module.
Probab=98.87 E-value=1.1e-08 Score=91.18 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHhh
Q 003394 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRD 520 (823)
Q Consensus 441 ~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~ 520 (823)
+|+++|.+.+..+.|.++++.|++|+++.+.+.++++. .++|.+|++++..|.|..+|||.+|+|+|+.++-.. .+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~-~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~---~~ 76 (88)
T smart00753 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSV-PEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR---SE 76 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCH-HHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh---hh
Confidence 48899999999999999999999999999999987654 479999999999999999999999999999765543 56
Q ss_pred HHHHHHHHHH
Q 003394 521 HLTIFAQSLN 530 (823)
Q Consensus 521 qL~~la~~L~ 530 (823)
+++.+...|.
T Consensus 77 ~~~~~~~~l~ 86 (88)
T smart00753 77 PLAQFAETLK 86 (88)
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 5
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=0.025 Score=68.15 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=38.8
Q ss_pred HhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHh-HhceeehhhhhhhcCCCC
Q 003394 408 LDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSE-VYQMMRIESLSQMIPFFD 478 (823)
Q Consensus 408 l~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSq-vY~ti~i~~l~~l~~f~s 478 (823)
+.+-++|+.+...|+- ..+.+-+|.+.---+-|++.+.+. -|-+|.|||-..-++|-|
T Consensus 435 ~RllqQvSqiY~sIs~-------------~~l~~La~F~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 435 LRLLQQVSQIYESISF-------------ERLYKLAPFFSAFELEKLLVEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred HHHHHHHHHHHHHHhH-------------HHHHHHHhhcCHHHHHHHHHHHHhccceeEEeccccceeeecc
Confidence 3455566666666654 455556666666667777766554 577899999998888864
No 6
>PTZ00121 MAEBL; Provisional
Probab=97.79 E-value=0.017 Score=72.72 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=12.7
Q ss_pred HHHHHHHHHcCCccccc
Q 003394 375 SSLLSELVSKGVMSCAT 391 (823)
Q Consensus 375 ~~Ll~~l~~~~vl~~a~ 391 (823)
.+||+.|....|+++..
T Consensus 814 p~lIknL~DCSiySyCl 830 (2084)
T PTZ00121 814 PGLIKNLFDCSIYSYCL 830 (2084)
T ss_pred hHhhcCHhhhhHHHhhc
Confidence 47888888888876553
No 7
>PTZ00121 MAEBL; Provisional
Probab=97.07 E-value=0.65 Score=59.40 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=6.9
Q ss_pred cCChHHHHHHHHHH
Q 003394 20 VGQKQDALQVLHDL 33 (823)
Q Consensus 20 vGq~~~AL~~L~d~ 33 (823)
+--...-++-|.-+
T Consensus 355 ~~sf~~CiE~LF~~ 368 (2084)
T PTZ00121 355 KLSFKKCIEGLFNH 368 (2084)
T ss_pred cchHHHHHHHHhhc
Confidence 33444556666533
No 8
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=7 Score=47.85 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003394 546 LGEMLAGLGEIVDKEHKRLL 565 (823)
Q Consensus 546 ~~~~~~~~~~~~~~eh~~~l 565 (823)
|...|.+-...+++-++.++
T Consensus 318 rkeNy~kGqaELerRRq~le 337 (1118)
T KOG1029|consen 318 RKENYEKGQAELERRRQALE 337 (1118)
T ss_pred hHHhHhhhhHHHHHHHHHHH
Confidence 44455555555554444443
No 9
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.82 Score=51.97 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=96.0
Q ss_pred ccccHHHHHHHHHHcCCcccccHHHHHHHHH-HhhcCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHH
Q 003394 370 EALSRSSLLSELVSKGVMSCATQEVKDLYNL-LEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEK 448 (823)
Q Consensus 370 ~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~l-LE~~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~ 448 (823)
++|+-..|++-.+.+-+...+ -+.+-|.- |..+ .+ ... ...=..|...|+.
T Consensus 286 e~p~~k~lLklfv~~EL~rw~--s~~~~yg~~l~~~-----------~~---~~~------------~~~gek~~~dL~~ 337 (439)
T KOG1498|consen 286 ELPDYKELLKLFVTMELIRWV--SLVESYGDELRTN-----------DF---FDG------------GEEGEKRWSDLKL 337 (439)
T ss_pred cCccHHHHHHHHHhcceeeeh--hHhhhhHHHHhhc-----------cc---ccc------------cchhhhHHHHHHH
Confidence 459999999998887766555 34444432 2211 00 000 2344678888888
Q ss_pred HHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHhhHHHHHHHH
Q 003394 449 LVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRDHLTIFAQS 528 (823)
Q Consensus 449 vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~qL~~la~~ 528 (823)
-|+--=+.-++.+|+.|++.++..+.. ++..++|++|=+.+..|.+.+.||-.+|+|.|....-++ .+|..-|..
T Consensus 338 RIiEHNiRiiA~yYSrIt~~rl~eLLd-l~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~K~~~----~~LneW~~n 412 (439)
T KOG1498|consen 338 RIIEHNIRIIAKYYSRITLKRLAELLD-LPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKVKDSN----EILNEWASN 412 (439)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhC-CCHHHHHHHHHHHHhccceEEEecCCCceEEEEecccHH----HHHHHHHhh
Confidence 888888899999999999999999876 468899999999999999999999999999998654333 344444444
Q ss_pred HHHHHhhh
Q 003394 529 LNKVRALI 536 (823)
Q Consensus 529 L~~a~~~i 536 (823)
+.+.+..+
T Consensus 413 ve~L~~ll 420 (439)
T KOG1498|consen 413 VEKLLGLL 420 (439)
T ss_pred HHHHHHHH
Confidence 44444433
No 10
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=8.5 Score=44.32 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEE
Q 003394 440 SRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVF 508 (823)
Q Consensus 440 ~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F 508 (823)
-.-+..|+..++.--+.++|=+|+.|++..+.+-+..-|..++|=++--|++.|.|...|||..|++.-
T Consensus 353 y~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRDGvIea~Id~~~g~m~s 421 (493)
T KOG2581|consen 353 YTLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQS 421 (493)
T ss_pred chHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHhccceeeeccccCceeh
Confidence 345677777888888999999999999999998777778889999999999999999999999997743
No 11
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.47 Score=52.25 Aligned_cols=92 Identities=12% Similarity=0.206 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHh
Q 003394 440 SRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLR 519 (823)
Q Consensus 440 ~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir 519 (823)
..|..-|++-++---|.-+|..|++|+..+|.-+.. +|+.++|++|-+.+.+|.+.++|+..+|.|.|....-. .
T Consensus 329 ~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld-~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~~n~----~ 403 (439)
T COG5071 329 EKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLD-MSPSETEQFISDLVNKGHFYAKINRPAQIISFEKSQNV----Q 403 (439)
T ss_pred hhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHc-CCHHHHHHHHHHHHhcCcEEEEecCccceEEeeccccH----H
Confidence 478888888888888999999999999999987754 68899999999999999999999999999999975433 3
Q ss_pred hHHHHHHHHHHHHHhhh
Q 003394 520 DHLTIFAQSLNKVRALI 536 (823)
Q Consensus 520 ~qL~~la~~L~~a~~~i 536 (823)
.+|..-+..+...+..+
T Consensus 404 ~~lneW~~NV~ellgkl 420 (439)
T COG5071 404 EQLNEWGSNVTELLGKL 420 (439)
T ss_pred HHHHHhcccHHHHHHHH
Confidence 45555555554444433
No 12
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.41 E-value=13 Score=45.48 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=13.2
Q ss_pred hHhhHHHHHHHHHHHHHhhhCCC
Q 003394 517 GLRDHLTIFAQSLNKVRALIYPP 539 (823)
Q Consensus 517 ~ir~qL~~la~~L~~a~~~i~p~ 539 (823)
.+..+...+...|...+..|..+
T Consensus 865 e~~~~~~~~~~~id~lv~~IK~~ 887 (1259)
T KOG0163|consen 865 EIISGANSTYRQIDDLVKKIKMP 887 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHhccc
Confidence 34555555566666666666543
No 13
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=89.97 E-value=3 Score=50.91 Aligned_cols=61 Identities=28% Similarity=0.432 Sum_probs=38.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 559 KEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQR 619 (823)
Q Consensus 559 ~eh~~~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~er 619 (823)
.+.+.+|+|++--++|++..++...++++||++++.++....+++-+++-+.|..++++.+
T Consensus 217 ~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~K 277 (1064)
T KOG1144|consen 217 RAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKK 277 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888777777776666666666666666666655555555555555544444433
No 14
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=89.03 E-value=1 Score=43.95 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=44.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHH
Q 003394 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVE 488 (823)
Q Consensus 436 ~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~ 488 (823)
.+.+..+++.+.+.|=.+++.-+|..|++|+++.+.+++.+. ..++.+++.+
T Consensus 69 ~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~-~~el~~~~~~ 120 (143)
T PF10075_consen 69 SPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLS-EEELEKFIKS 120 (143)
T ss_dssp --HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCC-HHHHHHHHHH
Confidence 468999999999999999999999999999999999998877 8899998887
No 15
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=88.03 E-value=5.6 Score=50.83 Aligned_cols=10 Identities=40% Similarity=0.913 Sum_probs=6.6
Q ss_pred CCChhHHHHH
Q 003394 122 DKRPEDLMLS 131 (823)
Q Consensus 122 ~~TPE~lLLs 131 (823)
+..|++||++
T Consensus 150 DLKPeNILL~ 159 (1021)
T PTZ00266 150 DLKPQNIFLS 159 (1021)
T ss_pred cCcHHHeEee
Confidence 3567777764
No 16
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=87.92 E-value=24 Score=39.78 Aligned_cols=248 Identities=15% Similarity=0.185 Sum_probs=138.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHhHHHHHh-hhhcCCCch----hHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCC
Q 003394 235 FEQLKVATDLQLWQEAFYSVEDIHGLM-CMVKKTPKP----SLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNK 309 (823)
Q Consensus 235 f~QL~~Av~LeLWqEAFrsvEDI~~Lm-~~skk~pkp----~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~ 309 (823)
..-..+..+..=|. +|+|++.+ ++.+..| | .|.-.|-+|+|+-|-. .--.+++.-+++|+..+.+
T Consensus 49 i~~c~v~~k~~ekd-----le~vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n~----~~~~l~L~vLsnLfn~~d~ 118 (378)
T KOG2753|consen 49 IEACDVLAKIPEKD-----LECVLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPND----KTASLRLQVLSNLFNGVDK 118 (378)
T ss_pred HHHhHHhhcCCcch-----HHHHHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCccC----CCcccHHHHHHHHHhccCC
Confidence 33445555666665 99998874 4556666 5 5677788888875522 2233667777777765544
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCCccch-------------------------hhh-hhhHhHHhhhhHhhCCCCC
Q 003394 310 NLSLKDLQLIASSVVLAALLVVPYDRSRSASH-------------------------LEL-ENEKDRNLRMANLIGFELD 363 (823)
Q Consensus 310 ~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~-------------------------~~~-d~~~~k~~Rla~LLgl~~~ 363 (823)
+ ++.-.+=+.+.|=||+=|--...-.++... +.+ +...+-.+=|+.|||--+.
T Consensus 119 ~-~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~ 197 (378)
T KOG2753|consen 119 P-TPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTE 197 (378)
T ss_pred C-chHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcc
Confidence 3 446677788888888755322110000000 001 1112233447888885432
Q ss_pred CCCcccccccHHHHHHHHHHcCCcccc----cHHHHHH-----HHHHhhcCChHhhHHhhHHHHHHHHhhcCCCCCCCCC
Q 003394 364 PKFDSREALSRSSLLSELVSKGVMSCA----TQEVKDL-----YNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSV 434 (823)
Q Consensus 364 ~~~~~~~~PtR~~Ll~~l~~~~vl~~a----~~ev~~L-----Y~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~ 434 (823)
--..-..--.+...+..+..-+++.+= -|.|+.| |.+|. .=++.++.....+..+
T Consensus 198 dnas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~i~qLL~-----IF~s~~L~aYveF~~~----------- 261 (378)
T KOG2753|consen 198 DNASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDLIHQLLK-----IFVSGKLDAYVEFVAA----------- 261 (378)
T ss_pred cchhHHHHHHHHHHHHHHcCCceeccchhccCchHHHhccchHHHHHH-----HHHhcchHHHHHHHHh-----------
Confidence 100000011223344444444454432 3556554 33333 2245666666666665
Q ss_pred ChhhhhhhHHHHHH--HHHHHHHH--HHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003394 435 PEVQLSRYIPALEK--LVTLRVLQ--QVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 435 ~~~~~~~Yv~~L~~--vi~~Rll~--qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
++.|-+-.....+ +.=+|||. +|+.--.+|+++.+.+-+. ....++|.++++|++-+.|..+||..+++|+-.+
T Consensus 262 -N~~Fvqs~gl~~E~~~~KMRLLTlm~LA~es~eisy~~l~k~Lq-I~edeVE~fVIdaI~aklV~~kidq~~~~viVs~ 339 (378)
T KOG2753|consen 262 -NSGFVQSQGLVHEQNMAKMRLLTLMSLAEESNEISYDTLAKELQ-INEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSS 339 (378)
T ss_pred -ChHHHHHhcccHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeeh
Confidence 2444333333333 33345553 4444445677777776433 3567899999999999999999999999998765
Q ss_pred C
Q 003394 511 L 511 (823)
Q Consensus 511 ~ 511 (823)
.
T Consensus 340 ~ 340 (378)
T KOG2753|consen 340 S 340 (378)
T ss_pred h
Confidence 4
No 17
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=87.24 E-value=22 Score=43.71 Aligned_cols=24 Identities=4% Similarity=0.115 Sum_probs=14.0
Q ss_pred chhHhhHHHHHHHHHHHHHhhhCC
Q 003394 515 SDGLRDHLTIFAQSLNKVRALIYP 538 (823)
Q Consensus 515 s~~ir~qL~~la~~L~~a~~~i~p 538 (823)
.+.+.+.....-++....+..+|+
T Consensus 891 q~~~~~~~d~~~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 891 QREMNSEYDVAVKNYEKLVKRLDS 914 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444556666665566666666665
No 18
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.08 E-value=3.1 Score=47.14 Aligned_cols=64 Identities=14% Similarity=0.248 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCC
Q 003394 447 EKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGL 513 (823)
Q Consensus 447 ~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~ 513 (823)
-.+.-.|-++.+.+-|.|++++++.+++..-+..++|+.|++-+.+|.+.++|| |-|.|..++.
T Consensus 300 v~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n~e 363 (422)
T KOG2582|consen 300 VSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDNPE 363 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEecCcc
Confidence 445667888899999999999999999988899999999999999999999999 9999998764
No 19
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.92 E-value=60 Score=36.72 Aligned_cols=268 Identities=15% Similarity=0.181 Sum_probs=144.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh--
Q 003394 168 NSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQ-- 245 (823)
Q Consensus 168 N~kLE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~~Av~Le-- 245 (823)
+|+.+..=-.+|-=-++.--=|.+--.|+.+|-.|- .+.+... ....| +..-|.+++.--+.=.+.+
T Consensus 92 q~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~----~I~~~tg-~~~~d------~~~kl~l~iriarlyLe~~d~ 160 (399)
T KOG1497|consen 92 QPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLV----GIPLDTG-QKAYD------VEQKLLLCIRIARLYLEDDDK 160 (399)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh----ccCcccc-hhhhh------hHHHHHHHHHHHHHHHhcCcH
Confidence 455555445555555666667888889999997764 3333221 11111 1223333332222222221
Q ss_pred cHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHH-HHHHHHHHH
Q 003394 246 LWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKD-LQLIASSVV 324 (823)
Q Consensus 246 LWqEAFrsvEDI~~Lm~~skk~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee-~~~~AS~vl 324 (823)
-=-|+|-. --.-|+.-+ ..|.+...|=---|+|.=..+-++=.|- +||.+.- .+...+-+ ++.+++.+.
T Consensus 161 veae~~in--RaSil~a~~---~Ne~Lqie~kvc~ARvlD~krkFlEAAq---rYyels~--~ki~~e~~~~~aL~~a~~ 230 (399)
T KOG1497|consen 161 VEAEAYIN--RASILQAES---SNEQLQIEYKVCYARVLDYKRKFLEAAQ---RYYELSQ--RKIVDESERLEALKKALQ 230 (399)
T ss_pred HHHHHHHH--HHHHhhhcc---cCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHhcchHHHHHHHHHhHh
Confidence 11122211 111223222 4455555554444555544444444443 4454442 22344433 456778777
Q ss_pred HHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhhc
Q 003394 325 LAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEHE 404 (823)
Q Consensus 325 LAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~ 404 (823)
.-.||+|-+-.+ .=|+.|+-=+.. +++|.-.-|-+..+.+=| . .+++.
T Consensus 231 CtlLA~~gpqrs---------------r~Latlfkder~-----~~l~~y~ileKmyl~riI-~--k~el~--------- 278 (399)
T KOG1497|consen 231 CTLLASAGPQRS---------------RMLATLFKDERC-----QKLPAYGILEKMYLERII-R--KEELQ--------- 278 (399)
T ss_pred heeecCCChHHH---------------HHHHHHhcCccc-----ccccchHHHHHHHHHHHh-c--chhHH---------
Confidence 888888864322 224555433332 245665555555554321 1 12222
Q ss_pred CChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHH
Q 003394 405 FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEK 484 (823)
Q Consensus 405 f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk 484 (823)
.+...|.-+.. .....=..-|..+++---+..+|+.|..|+++.|.++.. .|....|+
T Consensus 279 -----------ef~~~L~pHQk----------a~~~dgssil~ra~~EhNlls~Skly~nisf~~Lg~ll~-i~~ekaek 336 (399)
T KOG1497|consen 279 -----------EFEAFLQPHQK----------AHTMDGSSILDRAVIEHNLLSASKLYNNISFEELGALLK-IDAEKAEK 336 (399)
T ss_pred -----------HHHHHhcchhh----------hcccCcchhhhhHHHHHhHHHHHHHHHhccHHHHHHHhC-CCHHHHHH
Confidence 22222221110 000001112345566666778999999999999999865 57899999
Q ss_pred HHHHHHhcCceeEEEeccCCeEEEec
Q 003394 485 ISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 485 ~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
+.-+-+-.+-+.-.||...|.|+|.+
T Consensus 337 iaa~MI~qeRmng~IDQ~egiihFe~ 362 (399)
T KOG1497|consen 337 IAAQMITQERMNGSIDQIEGIIHFED 362 (399)
T ss_pred HHHHHHhHHHhccchHhhcceEeecc
Confidence 99999999999999999999999986
No 20
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.03 E-value=1.4e+02 Score=37.47 Aligned_cols=18 Identities=6% Similarity=0.104 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 003394 750 NKNTFQERVLNRRRVEVD 767 (823)
Q Consensus 750 d~~~f~~~i~~~R~~ef~ 767 (823)
+.+.|.+.+..-|..-+.
T Consensus 564 eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 445555555555444333
No 21
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=82.98 E-value=1.3e+02 Score=37.26 Aligned_cols=254 Identities=16% Similarity=0.201 Sum_probs=145.5
Q ss_pred HhhccchhhhHHHHHHHHHHHHHHHhhCchhHHHHHHHH-HHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 003394 163 EILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEI-IRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVA 241 (823)
Q Consensus 163 diLRnN~kLE~lY~~ta~~Af~FClkY~RktEFrRLce~-LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~~A 241 (823)
+.+|.-+=|=.|||...+.-|. +--|+ |.+||+.. |+-.||.|+-+|=-|=.+.==+|
T Consensus 482 ~r~rtRAmLchIYh~AL~d~f~------------~ARDlLLMSHlQdn---------I~h~D~stQIL~NRtmvQLGLCA 540 (843)
T KOG1076|consen 482 DRLRTRAMLCHIYHHALHDNFY------------TARDLLLMSHLQDN---------IQHADISTQILFNRTMVQLGLCA 540 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHH---------hhccChhHHHHHHHHHHHHHHHH
Confidence 7777778888999988876553 34455 78999874 45568899888877765555578
Q ss_pred HhhhcHHHHHHHHhHHHHH------hhhh-------cCCC----------chhHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 003394 242 TDLQLWQEAFYSVEDIHGL------MCMV-------KKTP----------KPSLLVVYYAKLTEIFWISSSHLYHAYAWF 298 (823)
Q Consensus 242 v~LeLWqEAFrsvEDI~~L------m~~s-------kk~p----------kp~~manYYekLa~IFwvs~n~LfHA~A~~ 298 (823)
-..++-+||--.+-||+.= +.-. .+|| .|--|-.=-+-|--||++|.--|
T Consensus 541 FR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlEcVyLtcaMLl------- 613 (843)
T KOG1076|consen 541 FRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLL------- 613 (843)
T ss_pred HHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHHHHHHHHHHHH-------
Confidence 8888888888888887642 1100 0111 12223333344444444442111
Q ss_pred HHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHH
Q 003394 299 KLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLL 378 (823)
Q Consensus 299 k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll 378 (823)
|+-.||+. -+.-=.|.++. .+.++.+-.-=..|..||- -+|+-.+
T Consensus 614 ----------------EIP~MAA~--~~d~Rrr~iSk-----------~frr~Le~serqsf~gPPE------n~RehVv 658 (843)
T KOG1076|consen 614 ----------------EIPYMAAH--ESDARRRMISK-----------SFRRQLEHSERQSFTGPPE------NTREHVV 658 (843)
T ss_pred ----------------hhhHHhhh--hhhhhcccccH-----------HHHHHHHHHhhccccCCch------hHHHHHH
Confidence 01111111 00001111111 1223333332233443431 4888888
Q ss_pred HHHH--HcCCcccccHHHHHHHHHHhhcCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHH
Q 003394 379 SELV--SKGVMSCATQEVKDLYNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQ 456 (823)
Q Consensus 379 ~~l~--~~~vl~~a~~ev~~LY~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~ 456 (823)
.... .+|=.+.+..-|.. + .++-.+|+.- +.=...-+..++..-|+-.|.
T Consensus 659 aAsKAm~~Gnw~~c~~fi~n-------n-------~KvW~Lfpn~--------------d~V~~Ml~~rIqEEsLRTYLf 710 (843)
T KOG1076|consen 659 AASKAMQKGNWQKCFEFIVN-------N-------IKVWDLFPNA--------------DTVLDMLTERIQEESLRTYLF 710 (843)
T ss_pred HHHHHHhcCCHHHHHHHHHh-------h-------hhHHHhcccH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 6544 45544433332222 1 1222222211 223444556677788888888
Q ss_pred HHHhHhceeehhhhhhhcCCCC---hHHHHHHHHHHHhcCceeEEEeccCCeEEEecC
Q 003394 457 QVSEVYQMMRIESLSQMIPFFD---FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL 511 (823)
Q Consensus 457 qlSqvY~ti~i~~l~~l~~f~s---~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~ 511 (823)
--|.||+||++..|..+...+- ..-|-++|+ +..|...+|.-++||.|...
T Consensus 711 tYss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmii----neEl~AslDqpt~~iv~hrv 764 (843)
T KOG1076|consen 711 TYSSVYDSVSLAKLADMFDLPEPKVHSIISKMII----NEELHASLDQPTQCIVMHRV 764 (843)
T ss_pred HhhhhhhhccHHHHHHHhCCCchhHHHHHHHHHH----HHHhhhccCCCcceEEEeec
Confidence 9999999999999999976552 355666666 46899999999999999863
No 22
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.88 E-value=15 Score=40.60 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=68.3
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCC
Q 003394 435 PEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGL 513 (823)
Q Consensus 435 ~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~ 513 (823)
.||-...|+..|-+.|-+.+|..|-+-|..|.|.++.+-+. .+..+++.+||.|+-.+.|.-|||..++.+..+...-
T Consensus 335 ~DpFIReh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Ln-v~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~ 412 (440)
T KOG1464|consen 335 DDPFIREHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELN-VPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKN 412 (440)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcC-CCHHHHHHHHHHHHhccccccchHHhhhHhccCccCC
Confidence 36788889999999999999999999999999988876432 5789999999999999999999999999999886443
No 23
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=75.64 E-value=11 Score=46.24 Aligned_cols=62 Identities=27% Similarity=0.359 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 564 LLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQRILREIEERE 628 (823)
Q Consensus 564 ~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~er~~~E~e~~~ 628 (823)
+.+=+..+++++|.-|+...+ ++++.|.+.+..++.+|.+++++|++++..++.+...++.+
T Consensus 216 v~~~qe~La~~qe~eE~qkre---eEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~K 277 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKRE---EEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKK 277 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455666666665554432 33333444444445555566677777666666555555544
No 24
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=72.51 E-value=44 Score=39.95 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 003394 552 GLGEIVDKEHKRLLARKSIIEKRK 575 (823)
Q Consensus 552 ~~~~~~~~eh~~~l~Rk~~ie~rK 575 (823)
......+.++.+++.+-++-|.|+
T Consensus 596 qdRks~srekr~~~sfdk~kE~Rr 619 (940)
T KOG4661|consen 596 QDRKSRSREKRRERSFDKRKEERR 619 (940)
T ss_pred hhhHHHHHHhhhhhhHHhhhhHHH
Confidence 345666777777887777777554
No 25
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=71.17 E-value=59 Score=38.87 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=10.1
Q ss_pred CChhhhhhhHHHHHHHHHHHH
Q 003394 434 VPEVQLSRYIPALEKLVTLRV 454 (823)
Q Consensus 434 ~~~~~~~~Yv~~L~~vi~~Rl 454 (823)
.+.++-++-++....++.-.|
T Consensus 85 l~e~~~s~~~~a~t~m~~~qL 105 (591)
T KOG2412|consen 85 LEEEDHSQKCTAGTRMACAQL 105 (591)
T ss_pred ccCcchhHhhhccchhHHHHH
Confidence 344444555555555554444
No 26
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=66.20 E-value=43 Score=37.49 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHhceeehhhhhhhcC
Q 003394 451 TLRVLQQVSEVYQMMRIESLSQMIP 475 (823)
Q Consensus 451 ~~Rll~qlSqvY~ti~i~~l~~l~~ 475 (823)
+..+|.+......+|.|++...--|
T Consensus 181 ~~~~l~~~~~~l~~i~~TDq~~~~p 205 (321)
T PF07946_consen 181 LIKALNKAGDYLEYIHFTDQPSGKP 205 (321)
T ss_pred HHHHHHhhhhheeEEEEECCCCCCC
Confidence 5666667777777777766655433
No 27
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=65.61 E-value=2.5e+02 Score=32.10 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=51.5
Q ss_pred HHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 003394 454 VLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (823)
Q Consensus 454 ll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~ 514 (823)
+|.-.-++.+.|+|+-|..=+ -+++.++|+-|||.++...|...||-..|.|..|+.+.+
T Consensus 339 ifEtfCRIHqcIti~mLA~kL-nm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~s 398 (432)
T KOG2758|consen 339 IFETFCRIHQCITIDMLADKL-NMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTVS 398 (432)
T ss_pred HHHHHHHHHHheeHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCCC
Confidence 456667788899999888432 378999999999999999999999999999999987664
No 28
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.73 E-value=95 Score=33.78 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC---ccccCCCHHHHHHHHHHHHHHHH
Q 003394 602 EAEQKRLAAEFEHRKNQRILREIEERELEEAQALLEEAEKRNKKKGGKKPI---LEGEKVTKQTLMERALTEQLRER 675 (823)
Q Consensus 602 eaE~~Rl~~E~~~Re~er~~~E~e~~~~~e~~~~l~~~~k~~~~~~~~~~~---~~~~~ld~~~l~~~~~~~~~Kek 675 (823)
...+.|+++|+.+.+.++.+...++...++....+ +. |....++. +++..=+-+.|+...|+-+.+.|
T Consensus 143 KkdEeR~~eEae~k~ee~~RkakEE~arkeheEyl---km---KaaFsVeeEGtee~~~eeqdnll~eFv~YIk~nK 213 (299)
T KOG3054|consen 143 KKDEERLAEEAELKEEEKERKAKEEEARKEHEEYL---KM---KAAFSVEEEGTEEVQGEEQDNLLSEFVEYIKKNK 213 (299)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HH---HhheeeccccccccccchHHHHHHHHHHHHHhcC
Confidence 33445555555555555555555554444443333 21 11111221 12222244456666666665544
No 29
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=62.39 E-value=2e+02 Score=35.39 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHH----HHHHHHHHHHHhhhhcC
Q 003394 791 KRKKIFYVRTEEEKI----KRLREEEEARKREGIHI 822 (823)
Q Consensus 791 ~Rr~~~~~~~eEer~----~~~~eeee~~~~~e~~~ 822 (823)
+|+.+..++..|+|. .+..++|++.+|+++.|
T Consensus 340 Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~aei 375 (811)
T KOG4364|consen 340 ERKEEKSRKSDEERKKLESKEVEAQELRKKRHEAEI 375 (811)
T ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444455555441 24445566666666654
No 30
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=61.96 E-value=46 Score=39.34 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 564 LLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKR 607 (823)
Q Consensus 564 ~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~R 607 (823)
...|...++++....|+...++.+.|++..+.+...++.+|+.|
T Consensus 390 a~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer 433 (708)
T KOG3654|consen 390 AQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEER 433 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 34455555655555556666666666665555555555444444
No 31
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=61.28 E-value=17 Score=33.69 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccC
Q 003394 271 SLLVVYYAKLTEIFWISSS-HLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVV 331 (823)
Q Consensus 271 ~~manYYekLa~IFwvs~n-~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP 331 (823)
.++-.|-.-|+.||-+||- .-+.-++|.-.|.-..++...=+.||.+.+.|...||.-+|-
T Consensus 30 D~~pdYmn~lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R~seD~KQi~ssfMlsisavV 91 (105)
T KOG3462|consen 30 DPPPDYMNFLGMIFSMCGLMFRLKWCSWLALYCSCISFANSRNSEDAKQISSSFMLSISAVV 91 (105)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999995 447788898888777666666677899999999999887763
No 32
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=60.21 E-value=1.3e+02 Score=36.04 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHhceee
Q 003394 450 VTLRVLQQVSEVYQMMR 466 (823)
Q Consensus 450 i~~Rll~qlSqvY~ti~ 466 (823)
+-.|.+.+.|+.|.-|.
T Consensus 133 ~~q~~~~~~~~~~~ki~ 149 (591)
T KOG2412|consen 133 INQRQTEIKSDIRAKIL 149 (591)
T ss_pred chhhhHhHHhhhhhhhh
Confidence 55667777777666544
No 33
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.36 E-value=61 Score=36.27 Aligned_cols=126 Identities=10% Similarity=0.183 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHcCCcc-cccHHHHHHHHHHhh--cCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHH
Q 003394 373 SRSSLLSELVSKGVMS-CATQEVKDLYNLLEH--EFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKL 449 (823)
Q Consensus 373 tR~~Ll~~l~~~~vl~-~a~~ev~~LY~lLE~--~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~v 449 (823)
.|+..-.-|..++-+. +.+..|+.+-.+-|. +=+-.+...-++..=+.|.+ |+-.......|-+|
T Consensus 261 ~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~------------D~~iRsHl~~LYD~ 328 (421)
T COG5159 261 RREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQ------------DSFIRSHLQYLYDV 328 (421)
T ss_pred hHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhcc------------CHHHHHHHHHHHHH
Confidence 3555555555666665 778888888777772 33444555555555555554 56677778888899
Q ss_pred HHHHHHHHHHhHhceeehhhhhhhcCCCC---hHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 003394 450 VTLRVLQQVSEVYQMMRIESLSQMIPFFD---FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (823)
Q Consensus 450 i~~Rll~qlSqvY~ti~i~~l~~l~~f~s---~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~ 514 (823)
++-+-+..+-.-|+.|+|+++..++.|-+ ...+-++|++-+-.| .+||.+||+.--..|-.
T Consensus 329 LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG----~LDqg~gcLivy~ep~q 392 (421)
T COG5159 329 LLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYG----TLDQGDGCLIVYGEPAQ 392 (421)
T ss_pred HHHhhhhhhcCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHh----hhccCCceEEEeCCccc
Confidence 99999999999999999999999987643 234446777766666 46999999988766543
No 34
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=51.13 E-value=81 Score=36.60 Aligned_cols=121 Identities=25% Similarity=0.321 Sum_probs=81.3
Q ss_pred hHHHHHhhcCccc--cCcc-ccccchhHHHHHHHHHHHHHHhh---------ccch-hhhHHHHHHHHHHHHHHHhhCch
Q 003394 126 EDLMLSYVSGEKG--KDRS-DRELVTPWFKFLWETYRTVLEIL---------RNNS-KLEALYAMTAHRAFQFCKQYKRT 192 (823)
Q Consensus 126 E~lLLsavs~e~~--~dRt-dr~~vtPwlkFLWEsYR~vLdiL---------RnN~-kLE~lY~~ta~~Af~FClkY~Rk 192 (823)
-++++++++..+. .+|. .++-+---+.-+|.+|..-.--| ..+. -++..-+.|-..|+-||-
T Consensus 264 anl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~f~~~f~~~w~~~~~~~~~~~~~~~~~~l~~i~~d~~gfag----- 338 (401)
T PRK09550 264 ANLLLNYCSQPGLLGPREAAFREWLLETIEETWSTFAEKFLKLWRKESVDAALAEEGYLEAYLQNILRDAVGFAG----- 338 (401)
T ss_pred HHHHHHHhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHhhh-----
Confidence 3778999986652 1111 33345555778899998876333 2222 256667788899999996
Q ss_pred hHHHHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhhh
Q 003394 193 TEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMV 264 (823)
Q Consensus 193 tEFrRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~s 264 (823)
||++|+=+.- .|..|++.-+....=...--..|.++..|=+=.+.|+|++|+-.++..+
T Consensus 339 ------~e~~RR~vG~-------a~v~d~~~i~d~~~r~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~~ 397 (401)
T PRK09550 339 ------CELIRRTIGL-------AHVADLDTIEDPELRAEAERHALKLGRELILNRDKIASIEDLIALFRQI 397 (401)
T ss_pred ------HHHhhhhccc-------ccccccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 9999976554 3445554443334444445567889999989999999999998887644
No 35
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.21 E-value=80 Score=34.32 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003394 802 EEKIKRLREEEEARKREG 819 (823)
Q Consensus 802 Eer~~~~~eeee~~~~~e 819 (823)
|++++..+||++++.++|
T Consensus 158 ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 158 EEKERKAKEEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333345555555555544
No 36
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.65 E-value=3e+02 Score=31.57 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=49.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003394 437 VQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 437 ~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
|-|.-|+...+ +|+--|+=.-|.|++++...+-. ..|..-|++-|-.-+-.|.++++||-.+|+|-=+.
T Consensus 294 ~h~~yyvREMR----~rvY~QlLESYrsl~l~~MA~aF-gVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNr 362 (393)
T KOG0687|consen 294 PHYRYYVREMR----RRVYAQLLESYRSLTLESMAKAF-GVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNR 362 (393)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHhHHHHhhccCceeeeeecccceeecCC
Confidence 44555665555 45566777889999999887632 13666566666555668999999999999987664
No 37
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=49.64 E-value=3.1e+02 Score=28.18 Aligned_cols=69 Identities=4% Similarity=-0.077 Sum_probs=36.4
Q ss_pred eeEEEeccCC-eEEEecCCCCchhHhhHHHHHHHHHHHHHhhhCCChhh-hhhHHHHHHHHHHHHHHHHHHH
Q 003394 495 IAMKIDHMRG-VVVFCNLGLESDGLRDHLTIFAQSLNKVRALIYPPANK-ASKLGEMLAGLGEIVDKEHKRL 564 (823)
Q Consensus 495 l~vrIDH~~~-~i~F~~~~~~s~~ir~qL~~la~~L~~a~~~i~p~~~~-~~~~~~~~~~~~~~~~~eh~~~ 564 (823)
-+.-+||.+| ..-|+.+.|++..+- ++..|.-.+--...++-|+... -..|...+..-.+.++.-+..+
T Consensus 11 ~~~~~~~~~~gmp~ld~~t~~~q~~~-~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA 81 (181)
T PRK13454 11 AAAGHAASAPGMPQLDFSTFPNQIFW-LLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKA 81 (181)
T ss_pred cccccccCCCCCCCCcHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556788654 455665566665443 4555554444444566666544 3445555555444444443333
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=47.86 E-value=1.1e+02 Score=38.99 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 003394 611 EFEHRKNQRILRE 623 (823)
Q Consensus 611 E~~~Re~er~~~E 623 (823)
|..+|+..+++++
T Consensus 863 e~~~r~~l~~qr~ 875 (1018)
T KOG2002|consen 863 EKARREKLEKQRE 875 (1018)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444333333
No 39
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=47.67 E-value=2e+02 Score=33.05 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHhhcCChHhh---HHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHH
Q 003394 374 RSSLLSELVSKGVMSCATQEVKDLYNLLEHEFLPLDL---ASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLV 450 (823)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~f~Pl~l---~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi 450 (823)
++.+-.-+-.+..+.+++|+|..+=..-| -|+--+| .+-+...=..|.. ||-.......|.++.
T Consensus 265 ~ddv~~lls~K~~l~y~g~~i~AmkavAe-A~~nRSLkdF~~AL~~yk~eL~~------------D~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 265 PDDVAALLSAKLALKYAGRDIDAMKAVAE-AFGNRSLKDFEKALADYKKELAE------------DPIVRSHLQSLYDNL 331 (411)
T ss_pred HHHHHHHHhhHHHHhccCcchHHHHHHHH-HhcCCcHHHHHHHHHHhHHHHhc------------ChHHHHHHHHHHHHH
Confidence 44444555567777888888888877777 3433333 3333333334443 566777778888888
Q ss_pred HHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 003394 451 TLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (823)
Q Consensus 451 ~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~ 512 (823)
+-+=|-.+=.=|+.|.|+++..++.+ +..+||+=|-+-+=..-+.=.+||..||+.--..+
T Consensus 332 LEknl~riIEPyS~Vei~hIA~~IGl-~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~ 392 (411)
T KOG1463|consen 332 LEKNLCRIIEPYSRVEISHIAEVIGL-DVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEP 392 (411)
T ss_pred HHHhHHHHcCchhhhhHHHHHHHHCC-CcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCC
Confidence 88888888888999999999999875 44556655544444555566789999997654444
No 40
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.77 E-value=5.4e+02 Score=32.65 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003394 550 LAGLGEIVDKEHKRLLARKSIIEKRKEEHERQL 582 (823)
Q Consensus 550 ~~~~~~~~~~eh~~~l~Rk~~ie~rKE~~e~~~ 582 (823)
+....+.++.++..+..++..+++.+.+.++..
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~ 550 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLK 550 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556665555555555555555444443
No 41
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=46.00 E-value=90 Score=34.98 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003394 755 QERVLNRRRVEVDRRKVEREE 775 (823)
Q Consensus 755 ~~~i~~~R~~ef~~~~~e~~~ 775 (823)
+..+...|..+-++..++..+
T Consensus 257 ~~K~~k~R~~~~~~~~K~~~~ 277 (321)
T PF07946_consen 257 KKKAKKNREEEEEKILKEAHQ 277 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554444433
No 42
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=45.44 E-value=4.5e+02 Score=30.60 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=3.3
Q ss_pred hhCCCh
Q 003394 535 LIYPPA 540 (823)
Q Consensus 535 ~i~p~~ 540 (823)
||||..
T Consensus 54 mvD~~~ 59 (387)
T PRK09510 54 MVDPGA 59 (387)
T ss_pred ecChHH
Confidence 566653
No 43
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.40 E-value=1.2e+02 Score=35.43 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=65.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 003394 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (823)
Q Consensus 436 ~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~ 512 (823)
|.+++.-|+.|-..|-.|.+.|.-+=|.|++++....-. -.|...+|.-|++.+-.|.|+.|||--.++++-.+..
T Consensus 337 D~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af-~~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~~ 412 (466)
T KOG0686|consen 337 DMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAF-NTSVAILESELLELILEGKISGRIDSHNKILYARDAD 412 (466)
T ss_pred chhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHh-cccHHHHHHHHHHHHHccchheeeccccceeeecccc
Confidence 578888899999999999999999999999988766421 2478999999999999999999999999999987653
No 44
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=39.95 E-value=5.7e+02 Score=28.49 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccCCCH
Q 003394 582 LIEMEREEESRRLKQQKITEEAEQKRLAA-EFEHRKNQRILREIEERELEEAQALLEEAEKRNKKKGGKKPILEGEKVTK 660 (823)
Q Consensus 582 ~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~-E~~~Re~er~~~E~e~~~~~e~~~~l~~~~k~~~~~~~~~~~~~~~~ld~ 660 (823)
...+.++-+++......+..+++.+|+++ |.++|.++|.+.|.++......+..=-.+ .
T Consensus 321 ~e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkl--------------------l 380 (445)
T KOG2891|consen 321 AEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKL--------------------L 380 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH--------------------H
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhchhHHHHHHHH
Q 003394 661 QTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIDAAFQQR 711 (823)
Q Consensus 661 ~~l~~~~~~~~~Kek~E~~~kl~~~~Kr~DhleRA~R~eE~pll~~~~e~~ 711 (823)
.-....+-..-.+-++--++||+....++--+|--.-++|-.|+.+....+
T Consensus 381 kf~fekieareerrkqkeeeklk~e~qkikeleek~~eeedal~~all~~q 431 (445)
T KOG2891|consen 381 KFEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLNLQ 431 (445)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
No 45
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=36.86 E-value=1.4e+02 Score=35.58 Aligned_cols=49 Identities=31% Similarity=0.544 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 003394 573 KRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRL---AAEFEHRKNQRILR 622 (823)
Q Consensus 573 ~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl---~~E~~~Re~er~~~ 622 (823)
.||..+|.. .+..++|+++.++..+..+++|..|. .+|..+|.+.++-+
T Consensus 409 ~rkqqleae-~e~kreearrkaeeer~~keee~arrefirqey~rrkqlklme 460 (708)
T KOG3654|consen 409 RRKQQLEAE-KEQKREEARRKAEEERAPKEEEVARREFIRQEYERRKQLKLME 460 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhHhhhcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455544433 23345677777777777666666654 23444444443333
No 46
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.86 E-value=2.7e+02 Score=33.78 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhhH
Q 003394 675 RQEMEKKLQKLAKTMDY 691 (823)
Q Consensus 675 k~E~~~kl~~~~Kr~Dh 691 (823)
++-+..+...-++|+||
T Consensus 736 r~a~~drY~sdf~R~D~ 752 (940)
T KOG4661|consen 736 RKAVLDRYSSDFKRLDY 752 (940)
T ss_pred hhhHhhhhhcccccccc
Confidence 45677788888888887
No 47
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=34.51 E-value=78 Score=36.68 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhHh---ceeehhhhhhhcCCCC-----hHHHHHHHHHHHhcCceeEEEeccCCeEEEecC-CCC
Q 003394 446 LEKLVTLRVLQQVSEVY---QMMRIESLSQMIPFFD-----FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL-GLE 514 (823)
Q Consensus 446 L~~vi~~Rll~qlSqvY---~ti~i~~l~~l~~f~s-----~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~-~~~ 514 (823)
+.-|+.+++|+.+.+.. ..++++.+..-.+|.+ ..++|=+|++++-.|.|.-=|+|...++.|..+ |||
T Consensus 312 l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pfp 389 (394)
T KOG2688|consen 312 LPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPFP 389 (394)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCCC
Confidence 77899999999999999 8999999987777664 899999999999999999999999999999875 565
No 48
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=33.68 E-value=2.2e+02 Score=32.41 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=22.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 748 LDNKNTFQERVLNRRRVEVDRRKVEREERISLII 781 (823)
Q Consensus 748 ~~d~~~f~~~i~~~R~~ef~~~~~e~~~rl~~~~ 781 (823)
..||..|......+-..++..++.-+..|...+.
T Consensus 85 l~ey~~~~~~~rer~E~eL~eLkekq~~r~~eR~ 118 (361)
T KOG3634|consen 85 LGEYEDFDRIEREREEKELKELKEKQEKRKLERE 118 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777777777777777777666666665443
No 49
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.63 E-value=1.1e+02 Score=28.04 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=35.5
Q ss_pred chhHHHhHHHHHhcCChHHHHHHHHHHHhCCcccchh-hhHHHHHHHHHHHh
Q 003394 7 PEAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQ-KILEKIMFKYVELC 57 (823)
Q Consensus 7 PEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~-~~~E~Im~~~ieLC 57 (823)
++.-+.-|.-++..|+.++|++.|-+++..- ++|. ..--.-|+.+.++|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d--r~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRD--RDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccccccHHHHHHHHHHHHc
Confidence 4556788999999999999999999999654 7885 44444555555544
No 50
>PF11728 DUF939_C: DUF939 C-terminal domain; InterPro: IPR021062 This entry represents a C-terminal domain found in a set of bacterial proteins. The proteins are about 160 amino acids in length and are predicted to be multi-pass membrane proteins. ; PDB: 3KMI_B.
Probab=33.42 E-value=5.3e+02 Score=26.21 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhhhcC-CCchhHHH
Q 003394 196 RRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKK-TPKPSLLV 274 (823)
Q Consensus 196 rRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk-~pkp~~ma 274 (823)
..|-..|......+.. +..+.. ++++.....|++-|-.|+++ +++++..+.-... +|-..++|
T Consensus 40 ~~l~~~l~~a~~~A~~--~~eN~l-~~~~~yy~~Yf~MR~~Q~~i-------------L~~M~~~l~~i~~~~~q~~~ia 103 (167)
T PF11728_consen 40 SELEKLLKKAKSLAYR--DQENHL-LRNENYYYHYFEMREKQLEI-------------LKRMYPNLSKIYMSPKQAEIIA 103 (167)
T ss_dssp HHHHHHHHHHHHHHHH--CCCCS--HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHTT-SS--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HhCCCc-cCCchHHHHHHHHHHHHHHH-------------HHHHHHHHHHcCCCHHHHHHHH
Confidence 3333334444444433 333333 67888888999999999887 6777777664444 44678999
Q ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHH
Q 003394 275 VYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASS 322 (823)
Q Consensus 275 nYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~ 322 (823)
.|.+.+|.-+-.+++...=---+...+.-++...=+-|.+|+..=|+.
T Consensus 104 ~~~~~~a~~~~e~n~~~~ll~~L~~l~~~fr~~~LP~TReEFE~RA~L 151 (167)
T PF11728_consen 104 DFLEELAESLHENNTAEELLEELEELKEEFREMPLPKTREEFENRAAL 151 (167)
T ss_dssp HHHHHHHH----TTHHHHHHHHHHHHHHHHHTS---SSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 999999998877776555444556666666766667788888765553
No 51
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=33.40 E-value=6.1e+02 Score=26.89 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 718 LHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVERE 774 (823)
Q Consensus 718 ~~e~~~~~~~~~ak~~he~~l~~k~rL~r~~~d~~~f~~~i~~~R~~ef~~~~~e~~ 774 (823)
.|-++...--....+.++.+-+.+.|+.|...+.+.+..=-+.-|..-|+......+
T Consensus 143 K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emLqqkE 199 (225)
T KOG4848|consen 143 KYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEMLQQKE 199 (225)
T ss_pred HhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHHH
Confidence 333433333334444555566677888888888888887778888888887655433
No 52
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=31.35 E-value=48 Score=25.98 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHH
Q 003394 374 RSSLLSELVSKGVMSCATQEVKDLYNL 400 (823)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~ev~~LY~l 400 (823)
+..||..|+..||++..+ ++||++
T Consensus 3 K~~lI~~Li~~Giyk~~d---rqL~El 26 (38)
T PF13076_consen 3 KDFLIEKLIQSGIYKKED---RQLYEL 26 (38)
T ss_pred HHHHHHHHHHcCCcCccc---hHHHHc
Confidence 678999999999999877 888876
No 53
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.34 E-value=75 Score=34.00 Aligned_cols=47 Identities=26% Similarity=0.538 Sum_probs=38.2
Q ss_pred HHHhHHHHHhcCChHHHHHHHHHHHhCCcccchhhhHHHHHHHHHHH
Q 003394 10 ALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVEL 56 (823)
Q Consensus 10 ALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~~E~Im~~~ieL 56 (823)
.+.-|+|+...|+++.|+..|..+..+=|-=+|...++.|.....+=
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC 227 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 45679999999999999999999977766567888888887755443
No 54
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=31.28 E-value=8.7e+02 Score=28.06 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=135.4
Q ss_pred hhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHH
Q 003394 243 DLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASS 322 (823)
Q Consensus 243 ~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~ 322 (823)
..+=-+++=+.++|.-..+.-.-.- -|.+=++||.-=++-|-.-|||.=--....+|.... .-.++|..+.+..|-.
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~--d~~~l~~se~~~lA~~ 203 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCS--DIDDLSESEKQDLAFD 203 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCC-ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccc--cccccCHHHHHHHHHH
Confidence 4444567777788887766522222 234667787776666666666431111112332222 2457889999999999
Q ss_pred HHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHHHHHHh
Q 003394 323 VVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLE 402 (823)
Q Consensus 323 vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE 402 (823)
..+|||=-- .-.+++.+-. +-=|-+|.| + .++-|..-++..|.-. +. .|+-|.
T Consensus 204 L~~aALLGe---~iyNfGELL~------HPilesL~g-T-----------~~eWL~dll~Afn~Gd-----l~-~f~~l~ 256 (380)
T KOG2908|consen 204 LSLAALLGE---NIYNFGELLA------HPILESLKG-T-----------NREWLKDLLIAFNSGD-----LK-RFESLK 256 (380)
T ss_pred HHHHHHhcc---ccccHHHHHh------hHHHHHhcC-C-----------cHHHHHHHHHHhccCC-----HH-HHHHHH
Confidence 999987322 1122221100 000222333 1 1333333333333211 11 112122
Q ss_pred hcCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHH----HHHHHHHHHhHhceeehhhhhhhcCCCC
Q 003394 403 HEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLV----TLRVLQQVSEVYQMMRIESLSQMIPFFD 478 (823)
Q Consensus 403 ~~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi----~~Rll~qlSqvY~ti~i~~l~~l~~f~s 478 (823)
....+ -|++.+|.+.|.+=| ++-+..+-+-+-.+|+++.+...+. .|
T Consensus 257 ----------------~~~~~------------~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tk-ip 307 (380)
T KOG2908|consen 257 ----------------GVWGK------------QPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATK-IP 307 (380)
T ss_pred ----------------HHhcc------------CchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhC-CC
Confidence 11111 256777776665543 3334444444777899988887754 57
Q ss_pred hHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhHhhHHHHHHHHHHHHHhhh
Q 003394 479 FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRDHLTIFAQSLNKVRALI 536 (823)
Q Consensus 479 ~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~qL~~la~~L~~a~~~i 536 (823)
..++|-++|-|..-|.|.=.||-..|+|+|+.- -|--.=++|+..|+.+|..=..-|
T Consensus 308 ~~eVE~LVMKAlslgLikG~Idqv~~~v~~swv-qPRvl~~~qI~~Mk~rl~~W~~~v 364 (380)
T KOG2908|consen 308 NKEVELLVMKALSLGLIKGSIDQVEGVVYMSWV-QPRVLDRSQIVKMKDRLDEWNKDV 364 (380)
T ss_pred HHHHHHHHHHHHhccceeeeecccccEEEEecc-cccccCHHHHHhHHHHHHHHHHHH
Confidence 899999999999999999999999999999963 222223688889988887665544
No 55
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=31.15 E-value=3.6e+02 Score=31.20 Aligned_cols=119 Identities=17% Similarity=0.312 Sum_probs=78.6
Q ss_pred HHHHHhhcCccccCccccccchhHH----HHHHHHHHHHHHhh-cc----------chhhhHHHHHHHHHHHHHHHhhCc
Q 003394 127 DLMLSYVSGEKGKDRSDRELVTPWF----KFLWETYRTVLEIL-RN----------NSKLEALYAMTAHRAFQFCKQYKR 191 (823)
Q Consensus 127 ~lLLsavs~e~~~dRtdr~~vtPwl----kFLWEsYR~vLdiL-Rn----------N~kLE~lY~~ta~~Af~FClkY~R 191 (823)
+|++++++.++.....+|.--..|+ +-+|.+|..-.--| +. ..-++..-..+-..|+-||-
T Consensus 234 nL~l~~~~~~~~~~~~~~~~~~~~ll~~i~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~l~~i~~d~~Gfag---- 309 (370)
T TIGR01767 234 NLFLNALSRDGADQKGKRDAMREPLLEHVNQVWETFEETFSELWQKDSLDMVYANIDGYLTDTLSHIWEDAIGFAG---- 309 (370)
T ss_pred HHHHHHhCccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHhH----
Confidence 6899999887665444555555664 45777766554222 21 12235666778888889985
Q ss_pred hhHHHHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhh
Q 003394 192 TTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCM 263 (823)
Q Consensus 192 ktEFrRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~ 263 (823)
|+++|+=+.- .|..|++.-+....=.......|..+..|=+=.+.|+|++|+..++.+
T Consensus 310 -------~e~iRR~vG~-------Ahv~D~~~I~d~~~R~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~ 367 (370)
T TIGR01767 310 -------CELIRRTIGL-------AHVADLDTIVDFAKRIGCKRLALETGRAFIVKRSEIKSIDEVIELFAL 367 (370)
T ss_pred -------HHHHHHhccc-------ccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 8999976554 345555444333333444456889999988999999999999887664
No 56
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.08 E-value=84 Score=31.80 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHH
Q 003394 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVE 488 (823)
Q Consensus 441 ~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~ 488 (823)
.-+..+++..-.|.|+-++|.|+||.++.|..++.. +..+.-+.||+
T Consensus 109 ~imaAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl-~~ddAtk~ilE 155 (197)
T KOG4414|consen 109 DIMAAFRDATRKRAFALLLQAYSSIIADDFAAFLGL-PEDDATKGILE 155 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 344556667889999999999999999999988653 45555566665
No 57
>COG4857 Predicted kinase [General function prediction only]
Probab=30.92 E-value=3e+02 Score=31.17 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=65.7
Q ss_pred HHHHHhhcCcccc-Cccc----cccchhHHHH-----------HHHHHHHHHHhhcc-chhhhHHHHHHHHHHHHHHHhh
Q 003394 127 DLMLSYVSGEKGK-DRSD----RELVTPWFKF-----------LWETYRTVLEILRN-NSKLEALYAMTAHRAFQFCKQY 189 (823)
Q Consensus 127 ~lLLsavs~e~~~-dRtd----r~~vtPwlkF-----------LWEsYR~vLdiLRn-N~kLE~lY~~ta~~Af~FClkY 189 (823)
++-||++|..+-- |--. |+.|--...= ||++|| -.+++.| ..-|-.+-+.|...++-|.-
T Consensus 270 Nl~~~~~s~~g~~~~~~krd~~r~~L~e~i~~iw~~F~e~fs~lW~k~~-~~~l~~n~e~~ld~~i~~I~~d~lgfAG-- 346 (408)
T COG4857 270 NLWMSLFSQKGFEEDSGKRDEMRAYLLECILDIWETFREEFSLLWRKER-QDKLFENAEQALDYVIENIWKDSLGFAG-- 346 (408)
T ss_pred HHHHHHHhhhchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHhhcch--
Confidence 7788888854332 1111 3333333334 555555 3455554 23344455566666666643
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhh
Q 003394 190 KRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCM 263 (823)
Q Consensus 190 ~RktEFrRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~ 263 (823)
||+.|+-+..+ |.-||..-.--.+-+.---.-|..++.|-.=..-|.|+-||..|-.+
T Consensus 347 ---------~E~iRRtlGlA-------hvadl~ti~~~dkr~~~e~~al~~g~~~i~kr~~~~si~dv~~l~~l 404 (408)
T COG4857 347 ---------IEMIRRTLGLA-------HVADLETIADSDKRAQCEKKALKKGRHMIVKRSEIHSITDVIELAKL 404 (408)
T ss_pred ---------HHHHHHHhhhh-------hhccccccCCHHHHhhhHHHHHHHhHHHHhhhhhcccHHHHHHHHHH
Confidence 88888877664 23333222212222222234467777777788889999999888654
No 58
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=30.01 E-value=6.5e+02 Score=26.16 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhc
Q 003394 666 RALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAA 701 (823)
Q Consensus 666 ~~~~~~~Kek~E~~~kl~~~~Kr~DhleRA~R~eE~ 701 (823)
..-+..++-+.|.+..+... --..+||=+|.+||
T Consensus 118 ka~EeAek~r~ErE~~~~q~--eqERleRKKRiEEI 151 (171)
T PF05672_consen 118 KAREEAEKQRKERERIMQQE--EQERLERKKRIEEI 151 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34455666677777766555 34678888888887
No 59
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.67 E-value=5.5e+02 Score=30.32 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=8.8
Q ss_pred cCCCChHHHHHHH
Q 003394 474 IPFFDFAVVEKIS 486 (823)
Q Consensus 474 ~~f~s~~~iEk~l 486 (823)
+.++|..++..|+
T Consensus 141 ig~l~~~~v~sfl 153 (429)
T PRK00247 141 IGFLTSEEVESFL 153 (429)
T ss_pred cccCCHHHHHHHH
Confidence 4566777777765
No 60
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.50 E-value=9.3e+02 Score=28.51 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhcCChHhhH
Q 003394 392 QEVKDLYNLLEHEFLPLDLA 411 (823)
Q Consensus 392 ~ev~~LY~lLE~~f~Pl~l~ 411 (823)
.+..+||. |.+.+|+.-|
T Consensus 89 qe~~~LyK--e~ginP~~gc 106 (429)
T PRK00247 89 QKQKDLNK--EYGYNPLAGC 106 (429)
T ss_pred HHHHHHHH--HcCCCchHHH
Confidence 35555655 4567777544
No 61
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=29.41 E-value=84 Score=29.78 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHhhcc
Q 003394 272 LLVVYYAKLTEIFWISSSHL-YHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLV 330 (823)
Q Consensus 272 ~manYYekLa~IFwvs~n~L-fHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsI 330 (823)
.-..|+.-|+.||-++|-.+ ++-+||.=+|.-.-++-..=+++|.+.+.+.+.+|++++
T Consensus 30 ~~~Dy~~~L~~~~~m~gl~mr~K~~aW~al~~s~~S~an~k~~~d~kq~~ss~m~sv~al 89 (103)
T PF03669_consen 30 PPPDYMSFLGMIFSMAGLMMRNKWCAWAALFFSCQSFANMKSSNDTKQISSSFMFSVMAL 89 (103)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 56789999999999998554 788889777665544321112677788888899888876
No 62
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=29.29 E-value=82 Score=24.26 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=27.3
Q ss_pred chhHHHhHHHHHhcCChHHHHHHHHHHHhC
Q 003394 7 PEAALNQAEALINVGQKQDALQVLHDLITS 36 (823)
Q Consensus 7 PEnALKRA~ELi~vGq~~~AL~~L~d~i~s 36 (823)
|+.-+..|.-+...|+++.|.+.+..++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888999999999999999999999874
No 63
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=29.23 E-value=6.3e+02 Score=25.80 Aligned_cols=51 Identities=8% Similarity=-0.014 Sum_probs=29.0
Q ss_pred CchhHhhHHHHHHHHHHHHHhhhCCChhh-hhhHHHHHHHHHHHHHHHHHHH
Q 003394 514 ESDGLRDHLTIFAQSLNKVRALIYPPANK-ASKLGEMLAGLGEIVDKEHKRL 564 (823)
Q Consensus 514 ~s~~ir~qL~~la~~L~~a~~~i~p~~~~-~~~~~~~~~~~~~~~~~eh~~~ 564 (823)
....+-.|+-+|.-.|--...++.+|... -..|...+..-...++.-+..+
T Consensus 23 n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA 74 (184)
T CHL00019 23 NTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEA 74 (184)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677888877777777777665433 3445455554444444444333
No 64
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=28.74 E-value=4.3e+02 Score=34.15 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003394 615 RKNQRILREIEERELEEA 632 (823)
Q Consensus 615 Re~er~~~E~e~~~~~e~ 632 (823)
.|++|..++.-+.++++.
T Consensus 860 ~eee~~~r~~l~~qr~e~ 877 (1018)
T KOG2002|consen 860 EEEEKARREKLEKQREEY 877 (1018)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555444444433
No 65
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=28.37 E-value=1.9e+02 Score=27.38 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 714 EEKVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVEREERI 777 (823)
Q Consensus 714 ~d~~~~e~~~~~~~~~ak~~he~~l~~k~rL~r~~~d~~~f~~~i~~~R~~ef~~~~~e~~~rl 777 (823)
..+-+|+..++.+..+ .++|+..++.|+-+..+=+|=-.|.+.|...+.++=.....+-...|
T Consensus 36 d~rsLye~LqenK~~K-q~efeE~~K~kn~~r~LDedE~eFLd~v~~~~~~~E~~~~~ee~eeL 98 (102)
T PF10187_consen 36 DGRSLYERLQENKAAK-QEEFEEKHKLKNQFRGLDEDEIEFLDEVEEKKRAEERQRKREEEEEL 98 (102)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789988888765 77899999999998888889899999998887665544444444433
No 66
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.24 E-value=1.3e+03 Score=29.38 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003394 550 LAGLGEIVDKEHKRLLARKSIIEKRKEEHERQ 581 (823)
Q Consensus 550 ~~~~~~~~~~eh~~~l~Rk~~ie~rKE~~e~~ 581 (823)
+....+.++.++..+...+..+++.+++.++.
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~ 544 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKL 544 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444433
No 67
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=28.07 E-value=59 Score=26.57 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=39.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCcccchhhhHHHHHHHHHHHhhhcccccchhhHHHHHHHh
Q 003394 17 LINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIV 76 (823)
Q Consensus 17 Li~vGq~~~AL~~L~d~i~skr~r~w~~~~E~Im~~~ieLCVel~kg~~aKdgL~QYr~~ 76 (823)
|+..|+++.|+..+..++..- +..-.+++.+..+|+....-..|...|.++-..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678899999999999887643 556778888999999888766665555544433
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.20 E-value=1.3e+03 Score=28.94 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=10.9
Q ss_pred ccccchhHHHHHHHH
Q 003394 143 DRELVTPWFKFLWET 157 (823)
Q Consensus 143 dr~~vtPwlkFLWEs 157 (823)
..++.+|.++|+..|
T Consensus 63 tka~~~Pv~~~~~~t 77 (961)
T KOG4673|consen 63 TKALFDPVMSFMGNT 77 (961)
T ss_pred cccccccHHHhcccc
Confidence 345678999987764
No 69
>COG3124 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=2e+02 Score=29.62 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhHHHHHhh-hhcCCCchhH-------HHHHHHHHHHHHHH
Q 003394 233 TRFEQLKVATDLQLWQEAFYSVEDIHGLMC-MVKKTPKPSL-------LVVYYAKLTEIFWI 286 (823)
Q Consensus 233 tRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~-~skk~pkp~~-------manYYekLa~IFwv 286 (823)
.||+-||-..-=|-|-+.|+-..-|-+.++ |+.+.|++.- +..-|.-|..-||+
T Consensus 118 ~Rf~~ln~~lwse~WL~~Yre~~~ir~vL~gMa~R~prl~~L~~Sw~~l~~~Y~~Lea~F~~ 179 (193)
T COG3124 118 ERFVRLNNYLWSEQWLVRYREMAFIRNVLNGMASRRPRLDALRDSWYDLDAHYDALEARFWQ 179 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhchHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999987755 9999999864 44567777777775
No 70
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=26.44 E-value=1.2e+02 Score=30.51 Aligned_cols=57 Identities=21% Similarity=0.174 Sum_probs=39.6
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHH--HHHHHHHHhhc
Q 003394 265 KKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQL--IASSVVLAALL 329 (823)
Q Consensus 265 kk~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~--~AS~vlLAaLs 329 (823)
+.+|||..+.|| .+.|++.|--..=+-.+..+|...- ++|++|... +.+.|+++++-
T Consensus 9 ~~~Pk~~~~~n~----l~AFlvGG~IC~iGQ~l~d~~~~~~----~lt~~~a~~~~~~~lV~lgaiL 67 (141)
T TIGR02838 9 KYEPKPPYLKNC----VMAFLVGGLICLIGQLISDFYLRYF----QFSEKTAGSPTSATLIFISALL 67 (141)
T ss_pred hcCCCCcHHHHH----HHHHHhCcHHHHHHHHHHHHHHHhc----cCChhhcccchhhHHHHHHHHH
Confidence 347999988876 4789999998888888888884331 244444332 56677777763
No 71
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=26.17 E-value=5.1e+02 Score=24.74 Aligned_cols=120 Identities=14% Similarity=0.138 Sum_probs=68.5
Q ss_pred hhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhhcCChHhhHHhhHHHHHHHHh--hcCCCCCC
Q 003394 354 MANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEHEFLPLDLASKVQPLLAKISK--YGGKLASA 431 (823)
Q Consensus 354 la~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~f~Pl~l~~k~~p~L~~l~~--~~~~~s~~ 431 (823)
...+||+... -.-..|+..+...+. ..-+.-+-++++...+|..++..+...+..+-- .++..+..
T Consensus 6 V~~~lG~v~~--------~~i~~l~~ai~~~d~----~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~ 73 (143)
T PF12169_consen 6 VREILGLVDE--------EQIFELLDAILEGDA----AEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNL 73 (143)
T ss_dssp HHHHHTHTST--------HHHHHHHHHHHTT-H----HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-S
T ss_pred HHHHHCCCCH--------HHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhc
Confidence 3457887643 344556666666554 666777778888889999999999998887732 11111111
Q ss_pred CCCChhhhhhh---HHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhc
Q 003394 432 SSVPEVQLSRY---IPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKH 492 (823)
Q Consensus 432 ~~~~~~~~~~Y---v~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~ 492 (823)
..++..+...+ ...+..--+.++++.+++....++.+ ..+...+|-.++..|.-
T Consensus 74 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s-------~~pr~~lE~~llrl~~~ 130 (143)
T PF12169_consen 74 LELSEEEEEKLKELAKKFSPERLQRILQILLEAENELRYS-------SNPRILLEMALLRLCQL 130 (143)
T ss_dssp G--CTTTHHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTS-------SSHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccC-------CChHHHHHHHHHHHHHH
Confidence 11222233333 33344446666777777766655542 12456778888887764
No 72
>COG3556 Predicted membrane protein [Function unknown]
Probab=25.69 E-value=79 Score=31.34 Aligned_cols=35 Identities=20% Similarity=0.559 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhC-------chhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccCCC
Q 003394 276 YYAKLTEIFWISS-------SHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPY 333 (823)
Q Consensus 276 YYekLa~IFwvs~-------n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~ 333 (823)
--.-+++|||-.. |++||| +|+-.|+.+-||||++
T Consensus 56 lisGi~rv~~~~KG~dfYv~n~~F~a-----------------------KmglFvlvgLlSi~PT 97 (150)
T COG3556 56 LISGIARVFWSGKGVDFYVHNWMFHA-----------------------KMGLFVLVGLLSIIPT 97 (150)
T ss_pred HHHHHHHHHHhccceeEEEechHHHH-----------------------HHHHHHHHHHHhccch
Confidence 3467899999874 555554 5788999999999986
No 73
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=24.66 E-value=1.3e+03 Score=27.84 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhh
Q 003394 437 VQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQ 472 (823)
Q Consensus 437 ~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~ 472 (823)
.-++.|| .+.+.+.+.=+.-++..|.++-+.+|..
T Consensus 104 ~~lA~fi-t~YNAv~R~~~~~~~~~Y~~~v~~~l~~ 138 (489)
T PF05262_consen 104 ETLATFI-TIYNAVYRGDLDYFKKKYKNVVIKNLTP 138 (489)
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHhhHHHHhhcCh
Confidence 3455555 3455566666677777777777766653
No 74
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.50 E-value=3.5e+02 Score=33.02 Aligned_cols=7 Identities=14% Similarity=0.397 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003394 633 QALLEEA 639 (823)
Q Consensus 633 ~~~l~~~ 639 (823)
++..++.
T Consensus 63 ~~~~~~~ 69 (567)
T PLN03086 63 DQQMQES 69 (567)
T ss_pred HHHHHHH
Confidence 3444433
No 75
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=23.21 E-value=6.7e+02 Score=26.84 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003394 557 VDKEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQRILREIEEREL 629 (823)
Q Consensus 557 ~~~eh~~~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~er~~~E~e~~~~ 629 (823)
++.+..++-.+-+..+..|+.+|...++.+ .+-+-.++..+|.++-+++|..+|++-++.
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k-------------~K~e~~e~r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLK-------------KKLETDEIRSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777777777665443211 111222333444455666777777776653
No 76
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=22.80 E-value=7.3e+02 Score=25.30 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=78.2
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHhhc-------CChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHH
Q 003394 374 RSSLLSELVSKGVMSCATQEVKDLYNLLEHE-------FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPAL 446 (823)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~-------f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L 446 (823)
-.+|++.+...|.+..+..++..+..+++.+ ++|.-=..+=..++..+-..+ + ++.+..++.-|
T Consensus 13 A~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~~--------~-~~~~~nfl~~L 83 (184)
T CHL00119 13 AEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGSQ--------I-NENTLKFLMVL 83 (184)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHhc--------c-CHHHHHHHHHH
Confidence 3467777788888888888888888888754 244433333334444442210 0 12333333222
Q ss_pred HHHHHHHHHHHHHhHhceeehhhhhhh-----cCCC-ChH---HHHHHHHHHH--hcCceeEEEec--cCC-eEEEecCC
Q 003394 447 EKLVTLRVLQQVSEVYQMMRIESLSQM-----IPFF-DFA---VVEKISVEAV--KHNFIAMKIDH--MRG-VVVFCNLG 512 (823)
Q Consensus 447 ~~vi~~Rll~qlSqvY~ti~i~~l~~l-----~~f~-s~~---~iEk~lv~a~--~~~~l~vrIDH--~~~-~i~F~~~~ 512 (823)
-+-=-..+|.++...|..+--+.-... .+|+ +.. .|...|-... +...+...||. ..| .|.+|+..
T Consensus 84 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~~~~v~l~~~vD~~ligGi~i~~g~~~ 163 (184)
T CHL00119 84 VDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEIKLVITVDPSLIGGFLIKIGSKV 163 (184)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCCeEEEEeeeChHHhCcEEEEECCEE
Confidence 222111344445554444432221111 1232 444 4444443322 12335677787 344 56777766
Q ss_pred CCchhHhhHHHHHHHHHHHHH
Q 003394 513 LESDGLRDHLTIFAQSLNKVR 533 (823)
Q Consensus 513 ~~s~~ir~qL~~la~~L~~a~ 533 (823)
+++. ++++|..+-..|..++
T Consensus 164 ~D~S-i~~~L~~l~~~l~~~~ 183 (184)
T CHL00119 164 IDTS-IKGQLKQLASHLDTVL 183 (184)
T ss_pred EeHh-HHHHHHHHHHHHHHhc
Confidence 6654 7799998888887664
No 77
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=22.74 E-value=1e+03 Score=26.49 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHH-HHHhCchhHHHH-HH----------------HHHHHHhhhhCCCCCHHHHHHHHHHHHHHh
Q 003394 272 LLVVYYAKLTEI-FWISSSHLYHAY-AW----------------FKLFTLQKTYNKNLSLKDLQLIASSVVLAA 327 (823)
Q Consensus 272 ~manYYekLa~I-Fwvs~n~LfHA~-A~----------------~k~f~l~k~~~~~~t~ee~~~~AS~vlLAa 327 (823)
-+-.+|+.|-.- ||.|+ |++=|+ .. ...|...|...|.+|..| .+...++||.
T Consensus 80 ~~~~~y~~L~~~gFk~~~-y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~--D~~~a~lLA~ 150 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSE-YLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPE--DYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHhccCccC-hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCcc--chhHHHHHhc
Confidence 344566666666 44444 444332 22 334666677788888665 3555555554
No 78
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.69 E-value=1.7e+03 Score=28.41 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 003394 231 LDTRFEQLKVAT 242 (823)
Q Consensus 231 LetRf~QL~~Av 242 (823)
|+.++.+|..-.
T Consensus 232 ln~~l~~l~~~~ 243 (782)
T PRK00409 232 LNNEIRELRNKE 243 (782)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 79
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.43 E-value=1.7e+03 Score=28.19 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHh
Q 003394 230 YLDTRFEQLKVATD 243 (823)
Q Consensus 230 ~LetRf~QL~~Av~ 243 (823)
.|..++.+|...+.
T Consensus 226 ~ln~~l~~l~~~~~ 239 (771)
T TIGR01069 226 KLNNKLAQLKNEEE 239 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 36667777766655
No 80
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.52 E-value=1.3e+02 Score=24.16 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.0
Q ss_pred HHhHHHHHhcCChHHHHHHHHHHHhCC
Q 003394 11 LNQAEALINVGQKQDALQVLHDLITSK 37 (823)
Q Consensus 11 LKRA~ELi~vGq~~~AL~~L~d~i~sk 37 (823)
|--|..+|..|.++.|..+|.+++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 556899999999999999999999654
Done!