Query 003394
Match_columns 823
No_of_seqs 134 out of 190
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 23:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 99.0 5.4E-07 1.9E-11 101.5 31.5 409 8-537 18-434 (445)
2 4b4t_Q 26S proteasome regulato 98.9 7.2E-06 2.4E-10 87.9 36.3 391 6-514 3-405 (434)
3 3txn_A 26S proteasome regulato 98.8 1.8E-06 6.3E-11 96.1 28.7 289 156-512 59-363 (394)
4 4b4t_R RPN7, 26S proteasome re 98.3 5E-06 1.7E-10 93.0 15.7 221 230-511 167-393 (429)
5 4b4t_O 26S proteasome regulato 98.1 0.00014 4.8E-09 80.7 19.5 241 239-536 135-384 (393)
6 1ufm_A COP9 complex subunit 4; 97.3 0.00032 1.1E-08 61.9 6.5 61 449-510 15-75 (84)
7 4b4t_S RPN3, 26S proteasome re 97.3 0.001 3.4E-08 76.4 12.2 71 441-511 378-448 (523)
8 3etw_A Adhesin A; antiparallel 96.4 0.082 2.8E-06 49.5 14.8 46 658-703 67-112 (119)
9 3t5x_A PCI domain-containing p 95.7 0.019 6.3E-07 58.3 7.4 73 443-515 118-198 (203)
10 3t5v_B Nuclear mRNA export pro 90.5 0.29 1E-05 55.4 6.2 73 443-515 335-438 (455)
11 4b0z_A RPN12, 26S proteasome r 88.6 1.1 3.7E-05 46.0 8.4 67 436-510 162-228 (229)
12 1rz4_A Eukaryotic translation 86.0 19 0.00064 37.0 15.8 181 254-510 8-191 (226)
13 3chm_A COP9 signalosome comple 83.1 3 0.0001 41.1 8.0 50 461-510 106-156 (169)
14 4b4t_T 26S proteasome regulato 70.8 5.9 0.0002 41.8 6.4 72 433-512 168-239 (274)
15 3vkg_A Dynein heavy chain, cyt 45.1 4.8E+02 0.017 36.6 19.1 12 197-208 1395-1406(3245)
16 3kmi_A Putative membrane prote 42.6 1.9E+02 0.0063 28.4 11.2 140 168-322 14-157 (177)
17 2dfs_A Myosin-5A; myosin-V, in 38.5 4.1E+02 0.014 33.1 15.9 19 726-744 992-1010(1080)
18 2v66_B Nuclear distribution pr 37.0 2.5E+02 0.0086 25.8 10.5 40 664-703 40-79 (111)
19 3vkg_A Dynein heavy chain, cyt 24.5 1.7E+03 0.057 31.5 30.2 18 518-535 1860-1877(3245)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.4e-07 Score=101.52 Aligned_cols=409 Identities=17% Similarity=0.154 Sum_probs=211.8
Q ss_pred hhHHHhHHHHHhcCChHHHHHHHHHHHhCCcccchhhhHHHHHHHHHHHhhhcccccchhhHHHHHHHhhcccCcccHHH
Q 003394 8 EAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQQVNVTSLEE 87 (823)
Q Consensus 8 EnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~~E~Im~~~ieLCVel~kg~~aKdgL~QYr~~~Q~~nv~Sle~ 87 (823)
++.+..|+.|.. |++++|++.|..+-..-|.-.=..+.-.+....+.||++.+.-. ....++..++.-.+ -+-.
T Consensus 18 ~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~---~l~e~i~~Lskkr~--qlk~ 91 (445)
T 4b4t_P 18 KEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWD---DLNEQLTLLSKKHG--QLKL 91 (445)
T ss_dssp ----------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHH---HHHHHHHHHHTTTT--TSHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHhh--hhHH
Confidence 467888888855 89999999998887644322111333444555668999887632 22334444443211 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChhHHHHHhhcCccccCccccccchhHHHHHHHHHHHHHHhhcc
Q 003394 88 VIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRN 167 (823)
Q Consensus 88 Vi~~fl~lae~K~~~Aq~ka~~~~~~~~~dDLE~~~TPE~lLLsavs~e~~~dRtdr~~vtPwlkFLWEsYR~vLdiLRn 167 (823)
.+.+.+..+-.-+.. ..+++ -+++-.++++|+.
T Consensus 92 ai~~~V~~~~~~l~~-------------------~~~~d----------------------------~~~~~~~i~~l~~ 124 (445)
T 4b4t_P 92 SIQYMIQKVMEYLKS-------------------SKSLD----------------------------LNTRISVIETIRV 124 (445)
T ss_dssp HHHHHHHHHHHHHHH-------------------HCTTH----------------------------HHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHhc-------------------CCchh----------------------------HHHHHHHHHHHHH
Confidence 222322222111110 00000 0223344455542
Q ss_pred c--hh--hhHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q 003394 168 N--SK--LEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATD 243 (823)
Q Consensus 168 N--~k--LE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetRf~QL~~Av~ 243 (823)
- .| ||...+ +=...+|.=|....++...+++|..=.-.. ++. .+..+- ++.-+.|+.....
T Consensus 125 vte~kiflE~era---rl~~~La~i~e~~g~~~eA~~iL~~l~~Et--~~~------~~~~~k----ve~~l~q~rl~l~ 189 (445)
T 4b4t_P 125 VTENKIFVEVERA---RVTKDLVEIKKEEGKIDEAADILCELQVET--YGS------MEMSEK----IQFILEQMELSIL 189 (445)
T ss_dssp SSSCCCCCCHHHH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CSS------SCHHHH----HHHHHHHHHHHHH
T ss_pred HhccchHHHHHHH---HHHHHHHHHHHHccCHHHHHHHHHHHHHHH--Hhc------ccHHHH----HHHHHHHHHHHHH
Confidence 1 11 333222 223456666777778888888876432221 111 223333 4555679999999
Q ss_pred hhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHH
Q 003394 244 LQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSV 323 (823)
Q Consensus 244 LeLWqEAFrsvEDI~~Lm~~skk~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~v 323 (823)
.+-|..|--.+.=|..- ....+|.|.+.+.||.-++.++.--++|+=-+- .||.++..++-.-.+......-..+
T Consensus 190 ~~d~~~a~~~~~ki~~~--~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~---~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKK--TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ---YLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HTCHHHHHHHHHHHHHH--HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHhcccccCCHHHHHHHHHHH
Confidence 99999998776655332 224467789999999999999999999884333 3444443322222334444455555
Q ss_pred HHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhh
Q 003394 324 VLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEH 403 (823)
Q Consensus 324 lLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~ 403 (823)
|+.++--|.++.... + -....+..++ ..+|.-..|++......+... |.+...|. .
T Consensus 265 v~~~iLa~~~~~~~~---l--l~~~~~~~~~--------------~~l~~~~~L~k~f~~~~L~~~--~~~~~~~~---~ 320 (445)
T 4b4t_P 265 VYFLVLSPYGNLQND---L--IHKIQNDNNL--------------KKLESQESLVKLFTTNELMRW--PIVQKTYE---P 320 (445)
T ss_dssp HHHHHHSSCSSTTHH---H--HHSHHHHSSC--------------HHHHHHHHHHHHHHHCCSSSH--HHHHHHTC---S
T ss_pred HHHHHhCCCCchHHH---H--HHHHhhcccc--------------cccHHHHHHHHHHHhchHhhh--HHHHHHHH---H
Confidence 555555555432100 0 0001111111 134666666666666555432 22222221 0
Q ss_pred cCChHhhHHhhHHHHHHHHhhcCCCCCCCC-CChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHH
Q 003394 404 EFLPLDLASKVQPLLAKISKYGGKLASASS-VPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVV 482 (823)
Q Consensus 404 ~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~-~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~i 482 (823)
.+.| .+. ..+.....++..|.+.++..-|..+|+.|++|+|++|.+++. .|..++
T Consensus 321 ~L~~-----------------------~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~-l~~~ev 376 (445)
T 4b4t_P 321 VLNE-----------------------DDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLD-LTESQT 376 (445)
T ss_dssp STTT-----------------------CCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHT-SCHHHH
T ss_pred Hhcc-----------------------cchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhC-cCHHHH
Confidence 1111 000 111223567888999999999999999999999999999986 588999
Q ss_pred HHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhH---hhHHHHHHHHHHHHHhhhC
Q 003394 483 EKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGL---RDHLTIFAQSLNKVRALIY 537 (823)
Q Consensus 483 Ek~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~i---r~qL~~la~~L~~a~~~i~ 537 (823)
|++|.+.+..|.|..+||..+|+|+|+...-+++.+ .+++..|...+.++.++|+
T Consensus 377 E~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~ 434 (445)
T 4b4t_P 377 ETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLIT 434 (445)
T ss_dssp HHHHHHHHHHTSSCCEEETTTTEEEC--------------------------------
T ss_pred HHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999754333322 2344455555555555554
No 2
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.90 E-value=7.2e-06 Score=87.86 Aligned_cols=391 Identities=13% Similarity=0.100 Sum_probs=210.9
Q ss_pred CchhHHHhHHHHHhcCChHHHHHHHHHHHhCCcccch-----------hhhHHHHHHHHHHHhhhcccccchhhHHHHHH
Q 003394 6 KPEAALNQAEALINVGQKQDALQVLHDLITSKRHRAW-----------QKILEKIMFKYVELCVDMRRGKFAKDGLIQYR 74 (823)
Q Consensus 6 kPEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w-----------~~~~E~Im~~~ieLCVel~kg~~aKdgL~QYr 74 (823)
-|..-|..|+.|+..|++..|++.+..++...+..+. ....|........+|.++.+-..|.+-+.+-.
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4889999999999999999999999999986543211 13456677777888887776433333222222
Q ss_pred HhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCChhHHHHHhhcCccccCccccccchhHHHHH
Q 003394 75 IVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFL 154 (823)
Q Consensus 75 ~~~Q~~nv~Sle~Vi~~fl~lae~K~~~Aq~ka~~~~~~~~~dDLE~~~TPE~lLLsavs~e~~~dRtdr~~vtPwlkFL 154 (823)
.+.+..+-......+...+ +.+.... +..+ -.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l-------------------------------------~~~~~~~--~~~~---------~a 114 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLI-------------------------------------EKFEQVP--DSLD---------DQ 114 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHH-------------------------------------HHHCSCC--SCHH---------HH
T ss_pred HHHHHccchHHHHHHHHHH-------------------------------------HHHHhCC--CCHH---------HH
Confidence 2333322222222222111 1111111 0001 11
Q ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhhccCCCCCCCCCChHHHHHHHHHH
Q 003394 155 WETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTR 234 (823)
Q Consensus 155 WEsYR~vLdiLRnN~kLE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~k~~~~~~~~~Ls~peT~q~~LetR 234 (823)
-+.|+.++++.+.+.. +.+++.+ -...|.-|--..+|....+.+..-+....+.. ..|. .++.-
T Consensus 115 ~~~~~~~~~~~~~~~~-~~~~~~~---~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--------~~~~----~~~~~ 178 (434)
T 4b4t_Q 115 IFVCEKSIEFAKREKR-VFLKHSL---SIKLATLHYQKKQYKDSLALINDLLREFKKLD--------DKPS----LVDVH 178 (434)
T ss_dssp HHHHHHHHHHHHHSSC-CSSHHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--------CSTH----HHHHH
T ss_pred HHHHHHHHHHHHHhCc-cHHHHHH---HHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--------cchh----HHHHH
Confidence 1334555555553321 1111111 12223333333344444444444333332211 1233 34566
Q ss_pred HHHHHHHHhhhcHHHHHHHHhHHHHHhhhhcCCC-chhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCH
Q 003394 235 FEQLKVATDLQLWQEAFYSVEDIHGLMCMVKKTP-KPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSL 313 (823)
Q Consensus 235 f~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk~p-kp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ 313 (823)
+.+..+-..++-|..|-....-+-.+ ....| .|..++.+|..+..+++.-++|.=-.-.+...|..+.........
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTA---ANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---HHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHH---hhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 77888888999999887766555443 22333 468899999999999999888876666666666655433322222
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHH
Q 003394 314 KDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQE 393 (823)
Q Consensus 314 ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~e 393 (823)
...... +....++.+..... . .....+........ .....+|.-..|.......+
T Consensus 256 ~~~~~~---~~~~~l~~~~~~~~-------~----~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-------- 310 (434)
T 4b4t_Q 256 EKACQV---LKYMLLSKIMLNLI-------D----DVKNILNAKYTKET---YQSRGIDAMKAVAEAYNNRS-------- 310 (434)
T ss_dssp HHHHHH---HHHHHHHHHHHTCH-------H----HHHHHHHCSSSSTT---CCCHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHH---HHHHHHHHHhccch-------h----HHHhHHHHHHHHHH---hcchhhhHHHHHHHHHHhhh--------
Confidence 221211 22222222221100 0 00111111111110 01111222222222221111
Q ss_pred HHHHHHHHhhcCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhh
Q 003394 394 VKDLYNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQM 473 (823)
Q Consensus 394 v~~LY~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l 473 (823)
+......+ ...-..+.. ++.+..++..+...+....+.+++..|++|+++++.+.
T Consensus 311 l~~~~~~~-------------~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~ 365 (434)
T 4b4t_Q 311 LLDFNTAL-------------KQYEKELMG------------DELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKI 365 (434)
T ss_dssp HHHHHHHH-------------HHTHHHHTC------------SHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHH
T ss_pred HHHHHHHH-------------HHHHHHHcc------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11111111 111122222 56778889999999999999999999999999999987
Q ss_pred cCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 003394 474 IPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (823)
Q Consensus 474 ~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~ 514 (823)
+. .|..++|+.|.+++..|.|..+||+..|+|.|...+-+
T Consensus 366 l~-~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~ 405 (434)
T 4b4t_Q 366 IG-LDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQ 405 (434)
T ss_dssp HT-CCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-----
T ss_pred hC-cCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcch
Confidence 65 47889999999999999999999999999999875443
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.81 E-value=1.8e-06 Score=96.13 Aligned_cols=289 Identities=12% Similarity=0.106 Sum_probs=181.5
Q ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhhCchhHHH-----HHHHHHHHH---------HHhhhhccCCCCCCCC
Q 003394 156 ETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFR-----RLCEIIRNH---------LLNLNKYRDQRDRPDL 221 (823)
Q Consensus 156 EsYR~vLdiLRnN~kLE~lY~~ta~~Af~FClkY~RktEFr-----RLce~LR~H---------l~~~~k~~~~~~~~~L 221 (823)
..-|+++|.+-+.+.-..+--.++..++++|. .+|++-+| |||+++-.+ +..+.++-.. +
T Consensus 59 k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~-----~ 132 (394)
T 3txn_A 59 KLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKK-----L 132 (394)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-----c
Confidence 45577788776654445666688999999998 45556667 778765321 1222222111 2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHH-HhCchhHHHHHHHHH
Q 003394 222 SSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFW-ISSSHLYHAYAWFKL 300 (823)
Q Consensus 222 s~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~manYYekLa~IFw-vs~n~LfHA~A~~k~ 300 (823)
.|+ ..-||.-+....+...++-+..+=.++.---+..+- -+|.|.++|.+..--+.+.. ..++|-=-+-.++..
T Consensus 133 dd~---~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a--i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 133 DDK---NLLVEVQLLESKTYHALSNLPKARAALTSARTTANA--IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp SCT---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccc---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 222 567888888899999999888876666554444332 24889999998888887777 677765333333333
Q ss_pred HHHhhhhCCCCCHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHH
Q 003394 301 FTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSE 380 (823)
Q Consensus 301 f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~ 380 (823)
.+.++..-+ ......+ |-.=|++|++++. |....++.
T Consensus 208 ---f~~f~~~~~-~~~~~~l-----------------------------kYlvL~aLl~~~r---------~el~~~l~- 244 (394)
T 3txn_A 208 ---FEGFDSVDS-VKALTSL-----------------------------KYMLLCKIMLGQS---------DDVNQLVS- 244 (394)
T ss_dssp ---HHHHTTTCH-HHHHHHH-----------------------------HHHHHHHHHTTCG---------GGHHHHHH-
T ss_pred ---Hhccccccc-HHHHHHH-----------------------------HHHHHHHHHcCCH---------HHHHHHhc-
Confidence 233321111 1111111 2222444554431 22222221
Q ss_pred HHHcCCcccccHHHHHHHHHHhh-cCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHH
Q 003394 381 LVSKGVMSCATQEVKDLYNLLEH-EFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVS 459 (823)
Q Consensus 381 l~~~~vl~~a~~ev~~LY~lLE~-~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlS 459 (823)
.+....+.+|+|..+++++.. ....+.-+ ..+|..... .+ ..|+.+..++..|.+-|..+-+.+++
T Consensus 245 --~~~~~~~~~pei~~l~~L~~a~~~~dl~~f---~~iL~~~~~---~l-----~~D~~l~~h~~~L~~~Ir~~~L~~i~ 311 (394)
T 3txn_A 245 --GKLAITYSGRDIDAMKSVAEASHKRSLADF---QAALKEYKK---EL-----AEDVIVQAHLGTLYDTMLEQNLCRII 311 (394)
T ss_dssp --SHHHHTTCSHHHHHHHHHHHHHHTTCHHHH---HHHHHHSTT---TT-----TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccccccCCccHHHHHHHHHHHHhCCHHHH---HHHHHHHHH---HH-----hcChHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122357787777776662 11222111 122222111 00 12688899999999999999999999
Q ss_pred hHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 003394 460 EVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (823)
Q Consensus 460 qvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~ 512 (823)
.-|++|+|+++.+.+.. |..++|..|+.++..|.|..+||+.+|+|.|...+
T Consensus 312 ~pYsrIsl~~iA~~l~l-s~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 312 EPYSRVQVAHVAESIQL-PMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp TTCSEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HhhceeeHHHHHHHHCc-CHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 99999999999998764 99999999999999999999999999999998754
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=5e-06 Score=93.04 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCC
Q 003394 230 YLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNK 309 (823)
Q Consensus 230 ~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~ 309 (823)
-+|.=|.++.+++..+-|..|=..+.-+..++. ..+-|..++.|..--+.+.|-.++|.=+|-. |+.....+.
T Consensus 167 kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~---~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~---f~e~~~t~~- 239 (429)
T 4b4t_R 167 KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE---KGGDWERRNRYKTYYGIHCLAVRNFKEAAKL---LVDSLATFT- 239 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT---TCCCTHHHHHHHHHHHHGGGGTSCHHHHHHH---HHHHHHHSC-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHhChHHHHHHH---HHHHhccCC-
Confidence 577889999999999999999888888877754 3456777877877778888888886544332 333332221
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHc----C
Q 003394 310 NLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSK----G 385 (823)
Q Consensus 310 ~~t~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~----~ 385 (823)
....-.....|-..+|++|+.+. |..|...++.. +
T Consensus 240 ~~e~~~~~~~~~y~~l~al~~~~-----------------------------------------r~~l~~~v~~~~~~~~ 278 (429)
T 4b4t_R 240 SIELTSYESIATYASVTGLFTLE-----------------------------------------RTDLKSKVIDSPELLS 278 (429)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTC-----------------------------------------HHHHHHSSSSSHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhcCC-----------------------------------------HHHHHHHHhcCHHHHh
Confidence 11111122233333333333322 22222211110 0
Q ss_pred CcccccHHHHHHHHHHhh--cCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHhHhc
Q 003394 386 VMSCATQEVKDLYNLLEH--EFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQ 463 (823)
Q Consensus 386 vl~~a~~ev~~LY~lLE~--~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ 463 (823)
++ .-.|.+..+.+++.. .-+-.+.+. .++..... ....++.+..++..|.+-|..+.+.|+++.|+
T Consensus 279 ~l-~~~p~~~~~~~l~~~~~~~~~~~~~~---~~l~~~~~--------~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys 346 (429)
T 4b4t_R 279 LI-STTAALQSISSLTISLYASDYASYFP---YLLETYAN--------VLIPCKYLNRHADFFVREMRRKVYAQLLESYK 346 (429)
T ss_dssp GG-GSHHHHHHHHHHHHHHHHTCHHHHHH---HHHHHHST--------TTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCS
T ss_pred hc-cCChhHHHHHHHHHHHHhccHHHHHH---HHHHHHHh--------hhccCHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 11 113455555444442 111112222 22222211 11236788999999999999999999999999
Q ss_pred eeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC
Q 003394 464 MMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL 511 (823)
Q Consensus 464 ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~ 511 (823)
+|+|+++.+.+. +|..++|+.|++.+..|.|..+||..+|+|.|+..
T Consensus 347 ~I~l~~mA~~l~-~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 347 TLSLKSMASAFG-VSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp EEEHHHHHHHHT-SCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred eeeHHHHHHHhC-cCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 999999998865 58999999999999999999999999999999853
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00014 Score=80.67 Aligned_cols=241 Identities=14% Similarity=0.144 Sum_probs=130.5
Q ss_pred HHHHhhhcHHHHHHHHhHHHHHhhhhcCCCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHH
Q 003394 239 KVATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQL 318 (823)
Q Consensus 239 ~~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~ 318 (823)
..-..++--.+|=..++.+-++|... ..+-|.+.+.||+-.+..+-.-++|.=.......|+.-+ +...++|.++...
T Consensus 135 ~~yl~~~d~~~a~~~l~~~~~~l~~~-~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~-~~~~~~~~~~~~~ 212 (393)
T 4b4t_O 135 RTYLLKNDLVKARDLLDDLEKTLDKK-DSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL-EPSTSITLAERQQ 212 (393)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHS-CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSSSCSHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcc-CCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-cccccCCHHHHHH
Confidence 33345566677778888888887743 346788999999999999988776632111112222111 1235788999999
Q ss_pred HHHHHHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCccc-ccHHHHHH
Q 003394 319 IASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSC-ATQEVKDL 397 (823)
Q Consensus 319 ~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~-a~~ev~~L 397 (823)
+|..++++||.-|...+- +.||+.+.. -.+ -+|+...+
T Consensus 213 ~a~~l~~~all~~~i~~f------------------~eLL~~p~i-----------------------~~L~~~~~~~~l 251 (393)
T 4b4t_O 213 LAYDLSISALLGDKIYNF------------------GELLHHPIM-----------------------ETIVNDSNYDWL 251 (393)
T ss_dssp HHHHHHHHHHHCCSSCST------------------HHHHHSCCT-----------------------TSSCSSSSTTHH
T ss_pred HHHHHHHHHHcCCCCCCh------------------HHHhCChHH-----------------------HHhhcCCchHHH
Confidence 999999999998864321 124444321 111 12334444
Q ss_pred HHHHhhcCChHhhHHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHH--HhHhceeehhhhhhhcC
Q 003394 398 YNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQV--SEVYQMMRIESLSQMIP 475 (823)
Q Consensus 398 Y~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~ql--SqvY~ti~i~~l~~l~~ 475 (823)
|++|+ -|+..++.. +...+..+.+ ..|.+..+...+.+-+-...+.++ +.-|.+|+++.+.+.+.
T Consensus 252 ~~Ll~-~f~~g~~~~----f~~~~~~~~~--------~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~ 318 (393)
T 4b4t_O 252 FQLLN-ALTVGDFDK----FDSLIKVQIS--------KIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATH 318 (393)
T ss_dssp HHHHH-HHHHTCHHH----HHHHCCHHHH--------HSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHT
T ss_pred HHHHH-HHhcCCHHH----HHHHHHHhhh--------hCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhC
Confidence 44444 222221111 1111110000 023445555544443333334343 35688999999998876
Q ss_pred CCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC---CCCch---hHhhHHHHHHHHHHHHHhhh
Q 003394 476 FFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL---GLESD---GLRDHLTIFAQSLNKVRALI 536 (823)
Q Consensus 476 f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~---~~~s~---~ir~qL~~la~~L~~a~~~i 536 (823)
- +..++|.+|++++..|.|.-+||+.+|+|+|..- .++.+ .+++.|..-...+......|
T Consensus 319 i-~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~v 384 (393)
T 4b4t_O 319 L-PKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKM 384 (393)
T ss_dssp C-CHHHHHHHHHHHHHHSCSSSCEETTTTEECC----------------------------------
T ss_pred c-CHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 7899999999999999999999999999999752 23332 23344444444444444444
No 6
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.33 E-value=0.00032 Score=61.90 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003394 449 LVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 449 vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
-++---|..+|+.|++|+|++|.+++. +|..++|++|.+.+.++.|..+||..+|+|.|..
T Consensus 15 ~v~E~nl~~is~~Y~~Isl~~La~ll~-ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~ 75 (84)
T 1ufm_A 15 AVIEHNLLSASKLYNNITFEELGALLE-IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFET 75 (84)
T ss_dssp HHHHHHHHHHHHSCSEEEHHHHHHHTT-SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECC
T ss_pred HHHHHHHHHHHHhcCeeeHHHHHHHHC-cCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCC
Confidence 334444446999999999999999976 4799999999999999999999999999999975
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.001 Score=76.39 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC
Q 003394 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL 511 (823)
Q Consensus 441 ~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~ 511 (823)
.-+..|+..++...|..+|..|.+|++..+...+.+.|..++|.++.+++++|.|..+|||..|.|.|...
T Consensus 378 ~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~ 448 (523)
T 4b4t_S 378 QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTEL 448 (523)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCcc
Confidence 35788889999999999999999999999998777777789999999999999999999999999999753
No 8
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=96.41 E-value=0.082 Score=49.49 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhchh
Q 003394 658 VTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 703 (823)
Q Consensus 658 ld~~~l~~~~~~~~~Kek~E~~~kl~~~~Kr~DhleRA~R~eE~pl 703 (823)
.+..+.++..+.+..+.+++++.+++...+.||+||++.+..|-.|
T Consensus 67 ~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik~lr~gn~ 112 (119)
T 3etw_A 67 RFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGNL 112 (119)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4678899999999999999999999999999999999999988654
No 9
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=95.68 E-value=0.019 Score=58.27 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHhH--hceeehhhhhhhcC-----CCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec-CCCC
Q 003394 443 IPALEKLVTLRVLQQVSEV--YQMMRIESLSQMIP-----FFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN-LGLE 514 (823)
Q Consensus 443 v~~L~~vi~~Rll~qlSqv--Y~ti~i~~l~~l~~-----f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~-~~~~ 514 (823)
+..|+.++++.++..++.. |+.|+++.+..-.. -.|..++|-+|++++..|.|.-.|||..|++.+.. +|||
T Consensus 118 l~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP 197 (203)
T 3t5x_A 118 LEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFP 197 (203)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCCCC
Confidence 5677888888899888864 99999999885432 24899999999999999999999999999998876 6887
Q ss_pred c
Q 003394 515 S 515 (823)
Q Consensus 515 s 515 (823)
.
T Consensus 198 ~ 198 (203)
T 3t5x_A 198 P 198 (203)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=90.45 E-value=0.29 Score=55.41 Aligned_cols=73 Identities=8% Similarity=0.113 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHH----HhHh--ceeehhhhhhhcCC--------------------CChHHHHHHHHHHHhcCcee
Q 003394 443 IPALEKLVTLRVLQQV----SEVY--QMMRIESLSQMIPF--------------------FDFAVVEKISVEAVKHNFIA 496 (823)
Q Consensus 443 v~~L~~vi~~Rll~ql----SqvY--~ti~i~~l~~l~~f--------------------~s~~~iEk~lv~a~~~~~l~ 496 (823)
+..|+.++++.++..+ +-.| +.|+++.+..-..+ .|..++|-+|++++..|.|.
T Consensus 335 lerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~Ik 414 (455)
T 3t5v_B 335 LEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLR 414 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeE
Confidence 4566777777777777 6667 79999988753322 47889999999999999999
Q ss_pred EEEeccCCeEEEecC-----CCCc
Q 003394 497 MKIDHMRGVVVFCNL-----GLES 515 (823)
Q Consensus 497 vrIDH~~~~i~F~~~-----~~~s 515 (823)
-.|||..|+|.+... |||.
T Consensus 415 GyIsh~~~~lVlSK~~~~~~pFP~ 438 (455)
T 3t5v_B 415 ANCFPQLQLCVVKKTTMIQEIVPP 438 (455)
T ss_dssp EEEETTTTEEEECCCSCGGGTSCC
T ss_pred EEEecCCCEEEECCCCCCCCCCCC
Confidence 999999999999876 8875
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=88.61 E-value=1.1 Score=46.01 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=53.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003394 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 436 ~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
.+.+.-.++-|-.-+=..++..+++.|.+|+++.+.++..|-|..+++.|+-. +| .. |+ .|+|+|.+
T Consensus 162 ~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~---~g-w~--i~--dg~i~F~~ 228 (229)
T 4b0z_A 162 FPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE---RG-WD--IR--DGVIYFPK 228 (229)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH---HT-CE--EE--TTEEECC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH---cC-CE--Ee--CCEEecCC
Confidence 35556667777777777888999999999999999999999999999999876 44 33 33 88999964
No 12
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=86.02 E-value=19 Score=36.97 Aligned_cols=181 Identities=17% Similarity=0.213 Sum_probs=103.3
Q ss_pred HhHHHHHhhhhcC-CC-chhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccC
Q 003394 254 VEDIHGLMCMVKK-TP-KPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVV 331 (823)
Q Consensus 254 vEDI~~Lm~~skk-~p-kp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~vlLAaLsIP 331 (823)
.+.|+.++.-.-+ .| .-..+.+|++-+.. ..-.-+-+-.|+.|+|.++.+ ... ....+.+||=+|+--
T Consensus 8 ~~~i~~~l~~~~rYnp~~l~~le~Yv~qq~~---~~~YD~~anlalLklYq~~p~----~~~---~~ii~~iLlk~L~~~ 77 (226)
T 1rz4_A 8 RANVGKLLKGIDRYNPENLATLERYVETQAK---ENAYDLEANLAVLKLYQFNPA----FFQ---TTVTAQILLKALTNL 77 (226)
T ss_dssp HHHHHHHHHSGGGGCGGGHHHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHSGG----GCC---HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhccccCCHHHHHHHHHHHHHHHh---cccccHHHHHHHHHHHhcCCc----ccc---hhHHHHHHHHHHHcC
Confidence 4567777664444 23 45677777776543 222223345789999987643 232 245667777666644
Q ss_pred CCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhh-cCChHhh
Q 003394 332 PYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEH-EFLPLDL 410 (823)
Q Consensus 332 ~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~-~f~Pl~l 410 (823)
+.+ . +. ++ +-.+ |. ++..+ ---..+..|.++|+. +|.
T Consensus 78 p~~---D---F~----------~~-l~LI-----------p~--~~~~~--------~~I~~i~~L~~~L~~~~y~---- 115 (226)
T 1rz4_A 78 PHT---D---FT----------LC-KCMI-----------DQ--AHQEE--------RPIRQILYLGDLLETCHFQ---- 115 (226)
T ss_dssp TST---H---HH----------HH-HHTS-----------CH--HHHTS--------TTHHHHHHHHHHHHTTCHH----
T ss_pred CHH---H---HH----------HH-HHhC-----------Ch--hhhcC--------HHHHHHHHHHHHHHcCCHH----
Confidence 311 1 11 00 1112 21 11100 112334456677773 322
Q ss_pred HHhhHHHHHHHHhhcCCCCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHH
Q 003394 411 ASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAV 490 (823)
Q Consensus 411 ~~k~~p~L~~l~~~~~~~s~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~ 490 (823)
.+.+.+.+ ++++..-++.+.+.|=.+++..++..|++|+++.+.+++.+.|..++++++..
T Consensus 116 -----~fW~~l~~------------~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~-- 176 (226)
T 1rz4_A 116 -----AFWQALDE------------NMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSK-- 176 (226)
T ss_dssp -----HHHHHSCT------------TCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHH--
T ss_pred -----HHHHHHhc------------ChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHH--
Confidence 23333322 23444555556666667888899999999999999999988999999999987
Q ss_pred hcCceeEEEeccCCeEEEec
Q 003394 491 KHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 491 ~~~~l~vrIDH~~~~i~F~~ 510 (823)
.| -.+| .+|.|.|.+
T Consensus 177 -~G---W~vd-~~g~I~~~n 191 (226)
T 1rz4_A 177 -YG---WSAD-ESGQIFICS 191 (226)
T ss_dssp -HT---CEEC-C--CEECCC
T ss_pred -CC---CEEC-CCccEEeCC
Confidence 33 3455 567886643
No 13
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=83.11 E-value=3 Score=41.07 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=46.2
Q ss_pred HhceeehhhhhhhcCCCChHHHHHHHH-HHHhcCceeEEEeccCCeEEEec
Q 003394 461 VYQMMRIESLSQMIPFFDFAVVEKISV-EAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 461 vY~ti~i~~l~~l~~f~s~~~iEk~lv-~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
-..+|+++.+.+-+...+..++|.+|| +|+..|.|.-+||..+++|+...
T Consensus 106 ~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 106 SNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred hCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 378999999999888778999999999 99999999999999999999874
No 14
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.81 E-value=5.9 Score=41.77 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=54.9
Q ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhhcCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 003394 433 SVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (823)
Q Consensus 433 ~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~s~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~ 512 (823)
|+|.+.|+-+++-+-+.+=..++..+.+.|.+|+++.+.++.-|-|..++..|+-. +| ..+ ..|.|+|....
T Consensus 168 ~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~---~g-W~~----~~~~v~F~~~~ 239 (274)
T 4b4t_T 168 SQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE---RN-WPI----VNSKVYFNNQS 239 (274)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH---TT-CCC----CSSCCCC----
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH---cC-CEE----eCCEeEECCcc
Confidence 34555667777777777777888899999999999999999999999999999865 55 222 47888997643
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.13 E-value=4.8e+02 Score=36.58 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHh
Q 003394 197 RLCEIIRNHLLN 208 (823)
Q Consensus 197 RLce~LR~Hl~~ 208 (823)
..-++||++++.
T Consensus 1395 ~~ielLrqlld~ 1406 (3245)
T 3vkg_A 1395 RVITFIRQMVEK 1406 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc
Confidence 366888888875
No 16
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Probab=42.57 E-value=1.9e+02 Score=28.41 Aligned_cols=140 Identities=11% Similarity=0.089 Sum_probs=91.5
Q ss_pred chhhhHHHHHHHHHHHHHH-HhhCchhHHHHHHHHHHHHHHhhhh--ccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 003394 168 NSKLEALYAMTAHRAFQFC-KQYKRTTEFRRLCEIIRNHLLNLNK--YRDQRDRPDLSSPESLQLYLDTRFEQLKVATDL 244 (823)
Q Consensus 168 N~kLE~lY~~ta~~Af~FC-lkY~RktEFrRLce~LR~Hl~~~~k--~~~~~~~~~Ls~peT~q~~LetRf~QL~~Av~L 244 (823)
-.++|..+..|-..-=.+| ..-+-. -...++..|...+..+.+ |.+..+.. ++++...-.|++-|-.|+++
T Consensus 14 ~~~IE~~~k~Il~~~a~~L~~~~~~~-~~~~~~~~l~~~i~~a~~~A~~~~~N~l-~~~~~yy~~Yf~MR~~Q~~i---- 87 (177)
T 3kmi_A 14 QKKLQEEVSIVLIDIADIIVNPKKEN-GYSRDLYTLNSLIDSSISETYDNINNTL-LSDTRFFLEHMDIIKSQRDI---- 87 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCC-SHHHHHHHHHHHHHHHHHHHHHTGGGSC-HHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccc-cHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccCchHHHHHHHHHHHHHHH----
Confidence 3567777888877777788 443322 234455556655555332 22333333 67888999999999999877
Q ss_pred hcHHHHHHHHhHHHHHhhhhcC-CCchhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHH
Q 003394 245 QLWQEAFYSVEDIHGLMCMVKK-TPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASS 322 (823)
Q Consensus 245 eLWqEAFrsvEDI~~Lm~~skk-~pkp~~manYYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~t~ee~~~~AS~ 322 (823)
+++++..++-... +|-..++|.|.+++|.-+-..|+...=---+.....-++...=+-|.+|+..=|+.
T Consensus 88 ---------L~~m~~~i~~i~~~~~q~~~iA~~~~~~a~~~~e~n~a~~ll~~L~~l~~~fr~~~LP~TReEFE~RA~L 157 (177)
T 3kmi_A 88 ---------LENLYSYVSQLNSTPPQAHILSAFIHKIGYTEFEAETGNLLLEELKRLMISMKNQPLPVDRTEFENRAIL 157 (177)
T ss_dssp ---------HHHHHHHHTTCSCCCHHHHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 7778877764444 45678999999999987666555444333344455555666667788887765553
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.50 E-value=4.1e+02 Score=33.11 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=9.4
Q ss_pred HHHHHHHhhHhhHHHHHHh
Q 003394 726 EVELSRQRHDGDLREKYRL 744 (823)
Q Consensus 726 ~~~~ak~~he~~l~~k~rL 744 (823)
.++..+++.+...++++.|
T Consensus 992 e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 992 EIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554
No 18
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.95 E-value=2.5e+02 Score=25.79 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhchh
Q 003394 664 MERALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPL 703 (823)
Q Consensus 664 ~~~~~~~~~Kek~E~~~kl~~~~Kr~DhleRA~R~eE~pl 703 (823)
++..+.++...+..+..+++.++-.-|-||||.|---..|
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 4667889999999999999999999999999999865543
No 19
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.53 E-value=1.7e+03 Score=31.46 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHHHHHHhh
Q 003394 518 LRDHLTIFAQSLNKVRAL 535 (823)
Q Consensus 518 ir~qL~~la~~L~~a~~~ 535 (823)
++..++.+-...|.++.-
T Consensus 1860 ~~~~~~~~~~~iH~sv~~ 1877 (3245)
T 3vkg_A 1860 HRDAVVSSLVYIHQTIGE 1877 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577888877777777653
Done!