Query 003395
Match_columns 823
No_of_seqs 144 out of 277
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 22:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2955 Uncharacterized conser 100.0 4E-162 8E-167 1346.0 30.9 732 1-820 1-739 (1069)
2 COG5043 MRS6 Vacuolar protein 100.0 2E-40 4.2E-45 392.6 18.5 276 1-302 2-308 (2552)
3 KOG1809 Vacuolar protein sorti 100.0 1.8E-33 3.8E-38 349.6 18.9 273 1-301 2-302 (1827)
4 PF12624 Chorein_N: N-terminal 99.8 2.4E-20 5.2E-25 172.7 9.2 92 1-97 1-94 (118)
5 PF10351 Apt1: Golgi-body loca 36.0 1.4E+02 0.003 34.4 8.3 128 317-473 167-296 (457)
6 PF08248 Tryp_FSAP: Tryptophyl 17.3 55 0.0012 20.6 0.4 8 406-413 4-12 (12)
7 PF12791 RsgI_N: Anti-sigma fa 15.7 95 0.0021 25.7 1.6 25 609-635 7-31 (56)
8 KOG4019 Calcineurin-mediated s 15.5 83 0.0018 33.2 1.4 69 334-407 41-109 (193)
9 PF03584 Herpes_ICP4_N: Herpes 12.1 1.3E+02 0.0027 31.5 1.6 19 615-633 1-20 (173)
10 PF07941 K_channel_TID: Potass 11.5 83 0.0018 28.4 0.1 10 608-617 1-10 (75)
No 1
>KOG2955 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.6e-162 Score=1346.00 Aligned_cols=732 Identities=53% Similarity=0.813 Sum_probs=696.0
Q ss_pred ChhHHHHHHHHHHhhhhcCCCccCcee---ecCeEEeeccccchhhhhhhcCCCCceEEeEEEeeEEEEEcccccccccc
Q 003395 1 MESIIARALEYTFKYWLKSFSRDQFKL---QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQI 77 (823)
Q Consensus 1 MESLVa~lLnr~LgkYVKNLdpDQLnL---sGGdVeL~NLeLKedAL~e~L~LP~~L~V~~G~~gkLtLkIP~SWTnLks 77 (823)
|||||+++|.++|++|+|||+||||+| +| +++|+|||||+|||++.|+||+||.|++++||++.+.|| |||||+
T Consensus 1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG-~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lP--wtklkT 77 (1069)
T KOG2955|consen 1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKG-TAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLP--WTKLKT 77 (1069)
T ss_pred CchHHHHHHHHHHHHHHhcCChhhEeeeeccc-cceecceecCHHHHHHhhcCCchheeeeeeecceEEecc--chhccc
Confidence 999999999999999999999999999 45 999999999999999999999999999999999999999 999999
Q ss_pred ccEEEEEcceEEEeccCCCccccccCCCCCCCCCCCCCCCCchHHHhhcCeEEEEEEEEEEEEecCCCccCCCCCCCCcE
Q 003395 78 EPIVLQVDRLDLVLEENPDKDACNYASSTPTPTGSSKGSGYGFADKIADGMTLQVNTVNLLLVTRGGAQRDGGASWTPPM 157 (823)
Q Consensus 78 ePV~I~ID~IyLvlep~~~~e~~r~~~~ss~~ass~~~~~YgFitKIIDNLQV~InnIHIRYED~~~~~t~gg~~~~PFs 157 (823)
+||+|.||+|.++++++.+.+..+ ++++.....++++|||++||++||.++|+.|.|+++.++ |+
T Consensus 78 ~PI~v~iDkl~l~le~~~e~~~~~---gpsp~~tas~~S~YGFa~KI~egmSl~V~sV~I~~~t~~------------f~ 142 (1069)
T KOG2955|consen 78 EPIVVQIDKLDLVLEENPEADVTK---GPSPSPTASAKSNYGFADKIAEGMSLQVKSVNILLETGG------------FA 142 (1069)
T ss_pred cceEEEeeeeeEEeecCccccCCC---CCCCCCCcccccccchHHHHhcCceEEEEEEEEEeecCc------------cc
Confidence 999999999999888876655443 333333333556799999999999999999999999875 67
Q ss_pred EEEEEeeeEEEecCCCceeeccccccccccCCceEEEEEEEEecceeeeecCCCcccccccccccccCCCCCCCCCCcee
Q 003395 158 ASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADGSIARSNEGASHRDEDGAKRA 237 (823)
Q Consensus 158 aGITLs~LsaqSTDenWqpsdL~~tR~~~~~k~~ilIFKlLsLesLSIY~~p~~dmf~d~~~~~s~~~iss~~~~~P~Ry 237 (823)
++++|++|+++|||+.|+.++|++||+++++.+.+++||+++|+.|+|++++++.|- ..... -..|.|+
T Consensus 143 aSf~L~~L~lyS~n~~W~~vdLR~tRi~~t~tg~il~FK~l~W~~lrIea~a~~s~~-e~~~~----------~~ap~rL 211 (1069)
T KOG2955|consen 143 ASFTLRNLVLYSTNESWKVVDLRETRIFSTNTGFILLFKKLEWEALRIEALAHPSMT-EANLA----------RSAPARL 211 (1069)
T ss_pred eeEEEeeeEEEecCCCceeeeeeeeeeccCCCceEEEeeccceeeeeeeccCCCchh-hHHHh----------hcCceee
Confidence 899999999999999999999999999999999999999999999999998887762 22111 1468999
Q ss_pred ecCCceeeeeeeeEEEEEEcccCCCCCCcceeeeeeccccccccCHHHHHHHHHHHHHHHHhhccCCCCccccccchhhc
Q 003395 238 FFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRALLRFLSGLYVCLNRDDVDLTTQQLSTEAA 317 (823)
Q Consensus 238 i~~~qyILkPISG~ArLtlNK~e~dsp~~~~vqlli~DEL~~~Lsd~QYrdlL~fl~sL~~~~~R~~~~~~~~~~~~~~~ 317 (823)
|+++ |.+|||++|+..|++++..++++|+|+++|+||++|+|++++|+++++.|++|+++++|+||
T Consensus 212 it~~--------gkiRItlkr~~~d~~vi~~~~~~IlddvlwvlT~pqLra~l~fat~m~~~l~~s~~~~ks~~------ 277 (1069)
T KOG2955|consen 212 ITED--------GKIRITLKRTALDSPVILEVQLHILDDVLWVLTEPQLRALLRFATGMYLCLNRSDVDPKSQQ------ 277 (1069)
T ss_pred eccC--------CeEEEEEeeeccCCchhhHhHHhhhHhHHHhcccHHHHHHHHHHHHHHHHHhhhccCccCcC------
Confidence 8885 99999999999999998888888999999999999999999999999999999999999999
Q ss_pred ccceeEEEeeeEEEeeechhHHHHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeeccccccccccCC
Q 003395 318 GRSLVSIVVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLV 397 (823)
Q Consensus 318 g~~~~~~~v~~~fl~ikd~~f~~e~l~~~~~~~ra~~~~~~~~~~l~~i~~~~lflrd~f~~p~c~lvqpsm~~~~~~~~ 397 (823)
|+|+++++.+.++.|++||+|+||.|++-||.+.||+|.+.... +
T Consensus 278 ----------------------------------~~vs~t~san~~~~~~~~g~~a~d~~s~i~~a~n~f~~k~tS~h-L 322 (1069)
T KOG2955|consen 278 ----------------------------------ACVSDTESANYLTKILIGGLFARDAFSRIPCALNQFSMKATSEH-L 322 (1069)
T ss_pred ----------------------------------ceeeccccccccceeeecccccchhhhhchhhhcccchhhhhhc-c
Confidence 99999999999999999999999999999999999999976555 9
Q ss_pred CcchhhhccCCccccCCcccceeecCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCceeec
Q 003395 398 LIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADGILVN 477 (823)
Q Consensus 398 ~vp~f~~~~~p~i~p~~~~~~~~~~~~p~~~~~~~q~~psp~pp~~as~tvi~cqpl~i~lqe~sclri~sfladgi~~~ 477 (823)
+||+|+.+|||-|||+++..|+..-+.|.+-||++|++|+|-||+||+.||++|+|+|.|+|||.|+|+++|+|+|||||
T Consensus 323 ~I~~~dlh~Cddih~~~~~p~~~~i~~gamql~~~Qv~id~yP~h~a~~t~~~wm~~s~~~~~~a~~rn~l~~~f~~~v~ 402 (1069)
T KOG2955|consen 323 AIPDFDLHFCDDIHPLDSGPWQIVIDVGAMQLHSLQVKIDPYPPHFASKTVIQWMPLSVHLQEEACLRNSLFLAFGIVVN 402 (1069)
T ss_pred ccccchhhccccccccccCCCceEeccceeEEEEEEeecCcCChhhcccchhheeehhhcchHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCccceEEEEeeceeeeeecCccccchhhhccCccccCcccceeEEeeceeeccCcccceeecccCCCCceeec
Q 003395 478 HGAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCL 557 (823)
Q Consensus 478 ~~~~lpd~s~~s~~f~lk~~d~~vp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~~~~sp~l~~~~l~l~~dpacf~~ 557 (823)
||+++||-++||+.|++|++||.+|+++..+...+...+.+.+.+|.|||+||||+.|++||.+|.|++|+|+|||||++
T Consensus 403 p~~~~~~~~t~s~l~~~~~~~l~~~~vv~rl~D~~I~~vss~~~~~~~~~~~ie~~~~~~slp~~~~~v~lEf~~~y~p~ 482 (1069)
T KOG2955|consen 403 PGDVLPDNSTNSLLFTLKELDLSVPLVVSRLQDSAIEEVSSVKKSFVGARLHIENLSFAESLPLKVRLVNLEFDPAYFPL 482 (1069)
T ss_pred CccccCCCccchhHhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhhhccCcccceEEEEecccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccccccccceEEEEEeecCCCCcccC---CCCceeEEecccceEEEEEEecCCCcceecCCCCcEEEEee
Q 003395 558 WEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNS---NSGLWKCVELKDACIEVAMVSADGKPLTVVPPPGGVVRIGV 634 (823)
Q Consensus 558 w~~qp~dasq~kw~~~as~~~~~let~~~~~~~~~~---~~~lw~cve~~~~~~e~am~t~dg~pl~~vpppggivr~gv 634 (823)
|+||||++||++|+++|+|+|+..+|..-.+..|.+ +.|+|.|+|-+|..+|+|||.|||.||..||||||+||+|+
T Consensus 483 ~~~~PIp~s~~y~qlga~~fS~derT~~w~~q~~~~l~~~m~~~~~~~gn~vs~e~~dV~~dg~~l~~V~P~~v~~~~~~ 562 (1069)
T KOG2955|consen 483 WPGQPIPASQKYWQLGASHFSLDERTSPWSTQLQSPLGPEMGLWNCVEGNDVSIEVADVSADGKPLITVPPPGVIVRIGV 562 (1069)
T ss_pred CCCCcCCchhhheecCceEEEeecccchhhhhhhcccchhhchheeccCCccchheeeecCCCeeEEEecCccceeeccc
Confidence 999999999999999999999999999999998877 89999999999999999999999999999999999999999
Q ss_pred eeeecccccceeehhhHHHHhhhhchhhhhhhhhcCcccccccCCccccccccccCCCcceEEEeeccceeeeeccccCC
Q 003395 635 ACQQYLSNTSVEQLFFVLDIYTYFGRVSEKIVRVGKNKSAMKSGNESLGVKLMENAPNDTAVSLAVKDLQLRFLEPSSMN 714 (823)
Q Consensus 635 ~~~~~~sn~s~eql~fvl~ly~y~g~v~e~~~~~~~~~~~~~~~~~~~~~~l~~~~p~d~av~l~~~~l~~~fle~~~~~ 714 (823)
+|++|.+-+++||+|||+|+|+|||+++|+|+.+++.+|. +.-+.++++.++||+|+||.|..|+||.+||+++-+.
T Consensus 563 ~c~l~~~f~df~~~~f~~~~yS~f~kss~~i~~~~~~~r~---~~~s~tt~~he~vk~~~~~~Lnk~~l~t~~~s~~wi~ 639 (1069)
T KOG2955|consen 563 ACELYISFADFEQLFFVLDLYSYFGKSSEKISIVKESKRQ---NTVSLTTGLHEKVKSDTAVKLNKKDLQTKFLSSSWIS 639 (1069)
T ss_pred ccccccchhhhhHHHHHHHHHhhccccccceeeechhhhh---hhhhcccchhhhccccchhhhhhhhhhhhhcccceee
Confidence 9999999999999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred cCCCceeEEeccceeEEEeecccceeEEEeeeeeeeEEEEeeeeCCCCccccCCCcCCCCCCC-CccCCCCCCcceEEEE
Q 003395 715 IEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWESVEVDCVDTEENLPHENGILLPPSESC-PQDIGNGYPQLRAVFW 793 (823)
Q Consensus 715 ~~~~plvqf~g~~~~~~~thrtlgga~~vss~l~w~~v~v~cv~~e~~~~~e~~~~~~~~~~~-~~~~~~g~~~~r~vfw 793 (823)
++|||++|+.|.|+..++||||++||++||++++||.++++||++...+.|||.+ || ..+..+|.-.+|.+||
T Consensus 640 ~~~mp~~kg~p~~~~vsf~~~~~i~~~~~~~ni~~Ep~e~~~V~~d~~q~~~~s~------~Gdk~~k~l~~~~l~~~~~ 713 (1069)
T KOG2955|consen 640 TQDMPLVKGLPKDLSVSFTHRTLIGAIAVSSNIYWEPIEVDCVDTDVEQEHENSW------NGDKLVKCLGSTPLRRVFW 713 (1069)
T ss_pred ccCCccccCcccceeeeecceEEeccccchhheeecccccceEecchhhhhhccc------cchhHHhhcccCccceeee
Confidence 9999999999999999999999999999999999999999999999999999999 45 6788899999999999
Q ss_pred EecCCccccCCCccccceeeeeeeEEE
Q 003395 794 VHKKGKHRLNDSAYAMPFLDMSMVFAL 820 (823)
Q Consensus 794 v~~~~~~~~~~~~~~~pfl~~~~~~~~ 820 (823)
|.|+++....+...+ ||+||+++|+|
T Consensus 714 ~tNg~~~~~S~dtl~-~f~~is~~~vi 739 (1069)
T KOG2955|consen 714 VTNGRHDEHSGDTLT-PFLDISITHVI 739 (1069)
T ss_pred ecCCCCCCcccccee-ecccceeEEEe
Confidence 999998888888765 99999999987
No 2
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=2e-40 Score=392.60 Aligned_cols=276 Identities=18% Similarity=0.270 Sum_probs=217.8
Q ss_pred ChhHHHHHHHHHHhhhhcCCCccCcee--ecCeEEeeccccchhhhhhhcCCCCceEEeEEEeeEEEEEccccccccccc
Q 003395 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (823)
Q Consensus 1 MESLVa~lLnr~LgkYVKNLdpDQLnL--sGGdVeL~NLeLKedAL~e~L~LP~~L~V~~G~~gkLtLkIP~SWTnLkse 78 (823)
+|+|+|++|||.||.||||||+.||++ |||+|.|+||+||++||+ .|+|| ++|++|.||.|+|+|| |++||++
T Consensus 2 LegLlanlLNRlLGsYVENfD~~QLnvgvw~GdVsl~NLriK~sald-kL~lp--i~V~sgligtLtl~iP--WsSLknK 76 (2552)
T COG5043 2 LEGLLANLLNRLLGSYVENFDTKQLNVGVWGGDVSLHNLRIKPSALD-KLGLP--IEVTSGLIGTLTLEIP--WSSLKNK 76 (2552)
T ss_pred hhHHHHHHHHHHHHHHHhhcCccceeEEEecceeEEEeeeecHHHHh-hcCCC--eEEeecceeeEEEEee--hHHhcCC
Confidence 699999999999999999999999998 999999999999999999 59999 9999999999999999 9999999
Q ss_pred cEEEEEcceEEEeccCCCccc-----ccc--------------C-C-CCCCCCCCCCCCCCch----HHHhhcCeEEEEE
Q 003395 79 PIVLQVDRLDLVLEENPDKDA-----CNY--------------A-S-STPTPTGSSKGSGYGF----ADKIADGMTLQVN 133 (823)
Q Consensus 79 PV~I~ID~IyLvlep~~~~e~-----~r~--------------~-~-~ss~~ass~~~~~YgF----itKIIDNLQV~In 133 (823)
||+|.|++||+.+.+...+.. ++. . + ...+..+++...+.+| ++|++||+||.|+
T Consensus 77 PVeIyIedi~llis~~~~~~~~~ee~p~~~~~lk~rq~~~wE~~~~~~~~ssss~~~~~~q~F~EsLitk~iDniqi~Ie 156 (2552)
T COG5043 77 PVEIYIEDIYLLISPQAKNSLTREELPQSQQALKQRQLDSWEILRETLEESSSSPNISRKQSFIESLITKLIDNIQIYIE 156 (2552)
T ss_pred CeEEEEEeeEEEechhhccccccccChHHHHHHHHHHHHHHHHhHHhhhhcccCccccccchHHHHHHHhcccceEEEEE
Confidence 999999999998766543211 100 0 0 0001112223344555 7899999999999
Q ss_pred EEEEEEEecCCCccCCCCCCCCcEEEEEEeeeEEEecCCCceeeccccccccccCCceEEEEEEEEecceeeeecCCCcc
Q 003395 134 TVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDM 213 (823)
Q Consensus 134 nIHIRYED~~~~~t~gg~~~~PFsaGITLs~LsaqSTDenWqpsdL~~tR~~~~~k~~ilIFKlLsLesLSIY~~p~~dm 213 (823)
+|||||||..++ ....|+++|+|+.+|++.|||++|.+.++... +.++||+++++.+++||.+.+..
T Consensus 157 dIhlrfed~~s~-----~~~g~ysfgltl~slra~std~~wte~fv~t~--------s~~i~kL~tl~~f~iy~~e~~pc 223 (2552)
T COG5043 157 DIHLRFEDNLSA-----DLEGPYSFGLTLYSLRATSTDASWTEYFVSTD--------SSCIHKLITLDYFSIYWCEISPC 223 (2552)
T ss_pred eeEEEEecCccc-----ccccceeeccEeeeEEEEecCccchhhhhhcc--------hhhhhheeeeeeeEEeeccCccc
Confidence 999999997532 22348999999999999999999999988764 56999999999999999755554
Q ss_pred ccccccc----ccccCCCCCCCCCCceeecCCceeeeeeeeEEEEEEcccCCCCCCcceeeeeeccccccccCHHHHHHH
Q 003395 214 FADGSIA----RSNEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNSPLGLEVQLHVTEAVCPALSEPGLRAL 289 (823)
Q Consensus 214 f~d~~~~----~s~~~iss~~~~~P~Ryi~~~qyILkPISG~ArLtlNK~e~dsp~~~~vqlli~DEL~~~Lsd~QYrdl 289 (823)
+.+-... ..+..+. +-.| + -.||||+|++|.|++++||-.++.-++..-| +.++++.+.|+|.||.++
T Consensus 224 I~~~did~~Lenfq~~i~---e~~~-~---~neYilkpVrgtakvsinklpt~Eipr~~~q-~s~~ef~~sl~d~~~~~~ 295 (2552)
T COG5043 224 ITTEDIDSYLENFQPMIA---EKSP-A---YNEYILKPVRGTAKVSINKLPTDEIPRLRGQ-LSVEEFSISLSDHMYYSL 295 (2552)
T ss_pred cchhhHHHHHHHHHHHHH---Hhhh-h---hhheeecccceeeEeeeccCCchHHhhHhhc-cccccCCceecHHHHHHH
Confidence 4332111 0111111 1112 1 1279999999999999999987765556554 378999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 003395 290 LRFLSGLYVCLNR 302 (823)
Q Consensus 290 L~fl~sL~~~~~R 302 (823)
+..+..++.-|..
T Consensus 296 l~vl~~lQ~vm~~ 308 (2552)
T COG5043 296 LGVLDYLQVVMKQ 308 (2552)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 3
>KOG1809 consensus Vacuolar protein sorting-associated protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-33 Score=349.62 Aligned_cols=273 Identities=16% Similarity=0.220 Sum_probs=215.4
Q ss_pred ChhHHHHHHHHHHhhhhcCCCccCcee--ecCeEEeeccccchhhhhhhcCCCCceEEeEEEeeEEEEEccccccccccc
Q 003395 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (823)
Q Consensus 1 MESLVa~lLnr~LgkYVKNLdpDQLnL--sGGdVeL~NLeLKedAL~e~L~LP~~L~V~~G~~gkLtLkIP~SWTnLkse 78 (823)
+|++++++|||+||.||+||+++|++| |||+|+|+||++|++||++ |++| ++|+.|++|+++|+|| |+||+++
T Consensus 2 le~~v~~lLnr~LG~yv~nld~~QL~lgIw~GdV~l~nL~ik~~aL~~-L~~P--~~v~~g~ig~l~L~IP--w~sL~~~ 76 (1827)
T KOG1809|consen 2 LESLVADLLNRFLGDYVENLDRSQLNLGIWGGDVVLSNLQIKESALSK-LDLP--FEVKSGLIGTLTLKIP--WKSLYNK 76 (1827)
T ss_pred cHHHHHHHHHHHhhhcccCCCCCcceEEEecceeEeechhhCHHHHhc-cCCC--eEEeeeeeeeEEEecc--chhcccC
Confidence 589999999999999999999999998 9999999999999999996 9999 8999999999999999 9999999
Q ss_pred cEEEEEcceEEEeccCCCccccccC-----------------CCCCCCCCCCCCCCC----chHHHhhcCeEEEEEEEEE
Q 003395 79 PIVLQVDRLDLVLEENPDKDACNYA-----------------SSTPTPTGSSKGSGY----GFADKIADGMTLQVNTVNL 137 (823)
Q Consensus 79 PV~I~ID~IyLvlep~~~~e~~r~~-----------------~~ss~~ass~~~~~Y----gFitKIIDNLQV~InnIHI 137 (823)
||++.||+||+++.|.+........ .+......+....+. +++++|++|+|+.|.|||+
T Consensus 77 pv~~~i~~i~~l~~p~s~~~~~~~~~~~~~~~~k~~~~~~~e~~~~~~~~~~~~~~~~F~e~lit~ii~nlqv~isniHl 156 (1827)
T KOG1809|consen 77 PVEINIEDIYLLVVPLSNVKYDPESEAKLSFELKTEYLERIEEAKKKRTEPDQEKTDTFGESLITQIIFNLQVSISNIHL 156 (1827)
T ss_pred ceEEEEeeeeeEeecccccccCchhhhhHHHHHHHhhhhhHHHHhhhcccccccccchHHHHHHHHHHhhccceeEEEEE
Confidence 9999999999999887754222100 000000000001122 4588999999999999999
Q ss_pred EEEecCCCccCCCCCCCCcEEEEEEeeeEEEecCCCceeeccccccccccCCceEEEEEEEEecceeeeecCCCcccccc
Q 003395 138 LLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLKEARDFSLNKKFIYVFKKLEWETLSVDLLPHPDMFADG 217 (823)
Q Consensus 138 RYED~~~~~t~gg~~~~PFsaGITLs~LsaqSTDenWqpsdL~~tR~~~~~k~~ilIFKlLsLesLSIY~~p~~dmf~d~ 217 (823)
||||... ++|++|+++.+++++|||++|.|+...++ ...+||++.++.+++||+...+|..+.
T Consensus 157 r~ed~~~---------~~fs~g~~l~~l~~~t~d~~w~~~~~~~~--------~~~~~kl~~l~~~~~y~n~~~~~~~~~ 219 (1827)
T KOG1809|consen 157 RYEDEIT---------DGFSFGITLPELSAVTTDEEWTPCLSDQT--------GKIIYKLVTLSGLAIYWNSCSEMSSQS 219 (1827)
T ss_pred ecccccc---------cceeeeeeehhhhhhhccccccccccccc--------cceEEEEEEeccccccccccchhhcCC
Confidence 9999752 24999999999999999999999976643 568999999999999999777777655
Q ss_pred ccccc---ccCCCCCCCCCCceeecCCceeeeeeeeEEEEEEcccCCCC--CCcceeeeeeccccccccCHHHHHHHHHH
Q 003395 218 SIARS---NEGASHRDEDGAKRAFFGGERFIEGISAQAYITVQRTELNS--PLGLEVQLHVTEAVCPALSEPGLRALLRF 292 (823)
Q Consensus 218 ~~~~s---~~~iss~~~~~P~Ryi~~~qyILkPISG~ArLtlNK~e~ds--p~~~~vqlli~DEL~~~Lsd~QYrdlL~f 292 (823)
..... ...+.......+ +.+|+++||++.|++++||..... -+..+. .+.++++.+++++.||.+++.+
T Consensus 220 ~~~~~~~~~~~i~~~~~~~~-----gy~~i~~pi~~~a~l~~~~~~~~~~~iP~~~~-~~~~~~~~~~~~~~qy~~~~~l 293 (1827)
T KOG1809|consen 220 DPDESLDFKQRIVNFRVVPP-----GYNYILKPISGNAKLKQNRVPTLEFSIPKIDL-NVEMHAEALTFSDAQYDDIMEL 293 (1827)
T ss_pred CHHHHhhHhhhhcccccCcc-----ccceEEEEecccccccccccccccccCCcccc-ccchhhhheeechhhhhhHHHH
Confidence 43221 111111111122 457899999999999999776543 233434 3368999999999999999999
Q ss_pred HHHHHHhhc
Q 003395 293 LSGLYVCLN 301 (823)
Q Consensus 293 l~sL~~~~~ 301 (823)
+.++++.+.
T Consensus 294 ~~~v~~~~~ 302 (1827)
T KOG1809|consen 294 LESVERVKT 302 (1827)
T ss_pred HHHHHHHHh
Confidence 999987754
No 4
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=99.82 E-value=2.4e-20 Score=172.72 Aligned_cols=92 Identities=27% Similarity=0.573 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHhhhhcCCCccCcee--ecCeEEeeccccchhhhhhhcCCCCceEEeEEEeeEEEEEccccccccccc
Q 003395 1 MESIIARALEYTFKYWLKSFSRDQFKL--QGRTAQLSNLDINGDALHASMGLPPALHVTTAKLGKLEIILPSSVSNVQIE 78 (823)
Q Consensus 1 MESLVa~lLnr~LgkYVKNLdpDQLnL--sGGdVeL~NLeLKedAL~e~L~LP~~L~V~~G~~gkLtLkIP~SWTnLkse 78 (823)
+|++++.+|++|||+|++|++++|+++ ++|+++|+||+||+++|+. ++|| +.|++|+||+++++|| |++|+++
T Consensus 1 fe~~v~~~L~~~Lg~yi~~l~~~ql~vsl~~G~v~L~nl~l~~~~l~~-~~lP--~~v~~g~i~~l~i~IP--w~~l~~~ 75 (118)
T PF12624_consen 1 FESLVSSLLNKYLGRYIENLDKDQLSVSLWNGEVELRNLELKKDALNN-LGLP--IEVKSGSIGKLRIKIP--WTSLWSK 75 (118)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHeeeeeccCceEEEccEeeHHHhcC-cCCC--eEEeEEEeeeEEEEEE--hHHhCCC
Confidence 589999999999999999999999987 6669999999999999995 8999 9999999999999999 9999999
Q ss_pred cEEEEEcceEEEeccCCCc
Q 003395 79 PIVLQVDRLDLVLEENPDK 97 (823)
Q Consensus 79 PV~I~ID~IyLvlep~~~~ 97 (823)
|++|.|++|++++.+....
T Consensus 76 pv~i~I~~v~l~~~~~~~~ 94 (118)
T PF12624_consen 76 PVVIEIEDVFLVLKPKDQD 94 (118)
T ss_pred CEEEEEeeEEEEEEECCcc
Confidence 9999999999999887643
No 5
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=35.97 E-value=1.4e+02 Score=34.45 Aligned_cols=128 Identities=20% Similarity=0.327 Sum_probs=91.9
Q ss_pred cccceeEEEeeeEEEeeechhHH--HHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeeccccccccc
Q 003395 317 AGRSLVSIVVDHIFLCIKDAEFQ--LELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSE 394 (823)
Q Consensus 317 ~g~~~~~~~v~~~fl~ikd~~f~--~e~l~~~~~~~ra~~~~~~~~~~l~~i~~~~lflrd~f~~p~c~lvqpsm~~~~~ 394 (823)
-......|.+|+|.+-.-|.+=+ +++-++.+.|.|-.-+||-+. .++.||.+-..+.- | .
T Consensus 167 ~~~~~~~i~~~eiiw~ll~~d~~pfi~~~L~~~~f~r~~~~dgs~~---n~l~I~~l~~~Nl~---------~------~ 228 (457)
T PF10351_consen 167 ESALRWEISADEIIWHLLDDDGQPFIDLALANISFSRVQNSDGSNS---NRLEIGMLQVFNLL---------P------N 228 (457)
T ss_pred cceEEEEEEcceEEEEeecCCCCccEEEEecCcEEEEEEcCCCCce---EEEEEEEEEEEcCC---------C------C
Confidence 34566788999999888776322 477889999999999998655 47889988877752 1 1
Q ss_pred cCCCcchhhhccCCccccCCcccceeecCcceEEEeecccccCCCCCCccccceeeccceEEEecccchhhhhhhccCc
Q 003395 395 DLVLIPDFAKDFCPVICPLGDQQWQINKGVPLICLHTLQVKPSPAPPSFASRTVISCQPLMIHLQEESCLRISSFLADG 473 (823)
Q Consensus 395 ~~~~vp~f~~~~~p~i~p~~~~~~~~~~~~p~~~~~~~q~~psp~pp~~as~tvi~cqpl~i~lqe~sclri~sfladg 473 (823)
. ..|+ -++|-.= +. ......|||-++.-+..|-.-=|-+- ..-|.+|||.|+|=|+.=-+|-.|+-=+
T Consensus 229 a--~y~~---iL~p~~~--~~---~~~~~~~~l~v~w~~~~pVGGI~V~e-~~ev~l~PL~iqld~~~~~kl~~y~FP~ 296 (457)
T PF10351_consen 229 A--VYPE---ILSPYES--NP---PDSDRKPMLRVFWRMLPPVGGIPVIE-HFEVNLQPLKIQLDEETGKKLMEYFFPK 296 (457)
T ss_pred C--Cchh---heecccc--cC---CCcCCCceEEEEEeecCCcCCcceEe-eEEEEEeceEEEEhHHHHHHHHHHhCCC
Confidence 1 1122 2333221 11 23567899999999998877666444 4678999999999999999999998533
No 6
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=17.34 E-value=55 Score=20.59 Aligned_cols=8 Identities=50% Similarity=1.028 Sum_probs=5.6
Q ss_pred cC-CccccC
Q 003395 406 FC-PVICPL 413 (823)
Q Consensus 406 ~~-p~i~p~ 413 (823)
|| |||||.
T Consensus 4 fw~ppiyp~ 12 (12)
T PF08248_consen 4 FWPPPIYPV 12 (12)
T ss_pred cCCCCcccC
Confidence 55 579984
No 7
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=15.70 E-value=95 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEEecCCCcceecCCCCcEEEEeee
Q 003395 609 EVAMVSADGKPLTVVPPPGGVVRIGVA 635 (823)
Q Consensus 609 e~am~t~dg~pl~~vpppggivr~gv~ 635 (823)
.+.+.|.||+ .+.|+.++| +.||=-
T Consensus 7 ~aiVlT~dGe-F~~ik~~~~-~~vG~e 31 (56)
T PF12791_consen 7 YAIVLTPDGE-FIKIKRKPG-MEVGQE 31 (56)
T ss_pred EEEEEcCCCc-EEEEeCCCC-CcccCE
Confidence 3678899998 667888888 999943
No 8
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=15.46 E-value=83 Score=33.24 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=47.1
Q ss_pred echhHHHHHHhhhcccceeeeccccccccccceeeeeeeeeccCCCCCceeeccccccccccCCCcchhhhccC
Q 003395 334 KDAEFQLELLMQSLFFSRATVSDGETASNLTKITVAGLFLRDTFSRPPSTLVQPSMQAVSEDLVLIPDFAKDFC 407 (823)
Q Consensus 334 kd~~f~~e~l~~~~~~~ra~~~~~~~~~~l~~i~~~~lflrd~f~~p~c~lvqpsm~~~~~~~~~vp~f~~~~~ 407 (823)
+|+-|| |+.|+.++|++.++-+.+-+-....-++=|.--++. -|.+-||-+......-+.+|.+.+.|-
T Consensus 41 ~~~~fq---~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~--k~yfaQ~~~~~~~~q~L~pP~~eKqFL 109 (193)
T KOG4019|consen 41 EDATFQ---LLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNEL--KLYFAQPGHPESNSQYLQPPEPEKQFL 109 (193)
T ss_pred cchHHH---HHHhhceeEEeccChhHHHHHHHHhhhcccCCCceE--EEEEccCCCccccccccCCCChhhcee
Confidence 355566 588999999999998876653333333334333332 256678887777667899999999773
No 9
>PF03584 Herpes_ICP4_N: Herpesvirus ICP4-like protein N-terminal region; InterPro: IPR005206 The immediate-early protein ICP4 (infected-cell polypeptide 4) is required for efficient transcription of early and late viral genes and is thus essential for productive infection. ICP4 is a large phosphoprotein that binds DNA in a sequence specific manner as a homodimer. ICP4 represses transcription from LAT, ICP4 and ORF-P that have high-affinity a ICP4 binding site that spans the transcription initiation site. ICP4 proteins have two highly conserved regions, this family contains the N-terminal region that contains sites for DNA binding and homodimerisation [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus
Probab=12.12 E-value=1.3e+02 Score=31.46 Aligned_cols=19 Identities=47% Similarity=0.896 Sum_probs=17.5
Q ss_pred cCCCcceec-CCCCcEEEEe
Q 003395 615 ADGKPLTVV-PPPGGVVRIG 633 (823)
Q Consensus 615 ~dg~pl~~v-pppggivr~g 633 (823)
.+|+|+.-+ |||-|-||-|
T Consensus 1 ~~gepwp~~~pPp~grv~~G 20 (173)
T PF03584_consen 1 PSGEPWPGSPPPPPGRVRYG 20 (173)
T ss_pred CCCCCCCCCCCCCCCceeeC
Confidence 479999999 9999999998
No 10
>PF07941 K_channel_TID: Potassium channel Kv1.4 tandem inactivation domain; InterPro: IPR012897 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The first Kv1 sequence (also known as Shaker) was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shaker channel, now constitute the Kv1 family. The family consists of at least 6 genes (Kv1.1, Kv1.2, Kv1.3, Kv1.4, Kv1.5 and Kv1.6) which each play distinct physiological roles. A conserved motif found towards the C terminus of these channels is required for efficient processing and surface expression []. Variations in this motif account for the differences in cell surface expression and localisation between family members. These channels are mostly expressed in the brain, but can also be found in non-excitable cells, such as lymphocytes []. This entry features the tandem inactivation domain found at the N terminus of the Kv1.4 potassium channel. It is composed of two subdomains. Inactivation domain 1 (ID1, residues 1-38) consists of a flexible N terminus anchored at a 5-turn helix, and is thought to work by occluding the ion pathway, as is the case with a classical ball domain. Inactivation domain 2 (ID2, residues 40-50) is a 2.5 turn helix with a high proportion of hydrophobic residues that probably serves to attach ID1 to the cytoplasmic face of the channel. In this way, it can promote rapid access of ID1 to the receptor site in the open channel. ID1 and ID2 function together to bring about fast inactivation of the Kv1.4 channel, which is important for the role of the channel in short-term plasticity []. ; GO: 0005249 voltage-gated potassium channel activity, 0030955 potassium ion binding, 0006813 potassium ion transport, 0016021 integral to membrane; PDB: 1KN7_A 1ZTO_A.
Probab=11.52 E-value=83 Score=28.37 Aligned_cols=10 Identities=80% Similarity=0.976 Sum_probs=0.0
Q ss_pred EEEEEEecCC
Q 003395 608 IEVAMVSADG 617 (823)
Q Consensus 608 ~e~am~t~dg 617 (823)
.|+|||+||-
T Consensus 1 ME~AMV~Ads 10 (75)
T PF07941_consen 1 MEVAMVSADS 10 (75)
T ss_dssp ----------
T ss_pred CceeEeeccc
Confidence 4899999993
Done!