Query 003395
Match_columns 823
No_of_seqs 144 out of 277
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 23:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1l_A Hypothetical protein; p 11.1 1.5E+02 0.0052 28.7 3.2 53 120-180 20-78 (148)
2 1kn7_A RCK4, voltage-gated pot 10.9 34 0.0012 29.6 -1.2 11 608-618 4-14 (78)
3 1wgv_A KIAA1068 protein; CS do 9.5 1.6E+02 0.0055 26.6 2.6 101 479-610 16-117 (124)
4 1pcf_A P15, transcriptional co 9.0 1.8E+02 0.0063 24.7 2.5 26 277-302 40-65 (66)
5 2w56_A VC0508; unknown functio 8.1 1.5E+02 0.0051 28.7 1.9 53 120-180 20-78 (147)
6 2yrb_A Protein fantom; beta sa 8.1 88 0.003 30.6 0.2 30 527-560 21-50 (156)
7 2ipq_X Hypothetical protein ST 6.4 80 0.0028 30.1 -0.9 66 524-602 29-95 (135)
8 3u80_A 3-dehydroquinate dehydr 6.2 1.6E+02 0.0054 28.8 1.0 12 470-481 70-81 (151)
9 3n8k_A 3-dehydroquinate dehydr 5.7 1.6E+02 0.0054 29.4 0.6 11 471-481 95-105 (172)
10 3lwz_A 3-dehydroquinate dehydr 5.6 1.5E+02 0.0053 29.0 0.5 12 470-481 73-84 (153)
No 1
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=11.10 E-value=1.5e+02 Score=28.68 Aligned_cols=53 Identities=13% Similarity=0.293 Sum_probs=35.6
Q ss_pred hHHHhhcCeEE------EEEEEEEEEEecCCCccCCCCCCCCcEEEEEEeeeEEEecCCCceeeccc
Q 003395 120 FADKIADGMTL------QVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLK 180 (823)
Q Consensus 120 FitKIIDNLQV------~InnIHIRYED~~~~~t~gg~~~~PFsaGITLs~LsaqSTDenWqpsdL~ 180 (823)
++++++.+-.+ +++.|-|+|-|+..+...|| +||....+. ++.++.|+-..+.
T Consensus 20 lL~~~l~~~~~~~~~~~~~~~ltlNFRD~~YSae~GG--fHPVEIrl~------~~~~~~W~i~YIT 78 (148)
T 2v1l_A 20 LLANILSEHQAKSEVQATSKEVVMNFRDSSYSAEDGG--FHPVEIALS------QSSDGQWCIEYIT 78 (148)
T ss_dssp HHHHHHHHHHC---------CEEEEEECTTCBTTTBC--CCCEEEEEE------ECSSSCEEEEEEE
T ss_pred HHHHHHHhccccccCcccCcEEEEEcCCCCcCcccCC--cCCEEEEEE------ecCCCcEEEEEEE
Confidence 46666655444 77899999999877655555 799877755 4578999877544
No 2
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 PDB: 1zto_A*
Probab=10.91 E-value=34 Score=29.60 Aligned_cols=11 Identities=64% Similarity=0.830 Sum_probs=9.4
Q ss_pred EEEEEEecCCC
Q 003395 608 IEVAMVSADGK 618 (823)
Q Consensus 608 ~e~am~t~dg~ 618 (823)
.|||||+||-+
T Consensus 4 mevamvsadss 14 (78)
T 1kn7_A 4 MEVAMVSAESS 14 (78)
T ss_dssp CCCCCCCCCCT
T ss_pred eEEEEeecccc
Confidence 68999999965
No 3
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=9.46 E-value=1.6e+02 Score=26.64 Aligned_cols=101 Identities=13% Similarity=0.270 Sum_probs=55.9
Q ss_pred CCccCCCccceEEEEeeceeeeeecCccccchhhhccCccccCcccceeEEeeceeeccCcccceeecccCCCCceeecc
Q 003395 479 GAVLPDSSVNSLAFYLEDLDITVPLDMNKLDNHARQRNLTAHSSFAGARLHIKKLFFSESPSLKLRLLHLEKDPACFCLW 558 (823)
Q Consensus 479 ~~~lpd~s~~s~~f~lk~~d~~vp~d~~~~~~~~~~~~~~~~~~f~garlhie~l~~~~sp~l~~~~l~l~~dpacf~~w 558 (823)
|..+|.. .-.=+..++.|+||+...-++..+ ..=.|+.-+|++ ++-....++.+|..=
T Consensus 16 G~~~~~y---~W~Qt~~~V~i~I~lp~~~~~~kd------v~V~i~~~~l~v-------------~~~~~~~~~~~~~~~ 73 (124)
T 1wgv_A 16 GAVRENY---TWSQDYTDLEVRVPVPKHVVKGKQ------VSVALSSSSIRV-------------AMLEENGERVLMEGK 73 (124)
T ss_dssp SBCCSSC---EEEEETTEEEEEEECCTTCCSGGG------EEEEECSSEEEE-------------EEECSSSEEEEEEEE
T ss_pred CCcCCcE---EEEEcccEEEEEEEcCCCCCchhh------eEEEEEcCEEEE-------------EEEccCCCceEEccc
Confidence 4555543 233478999999999743212111 122233333333 222112222333322
Q ss_pred CCCCCccccccccccccc-eEEEEEeecCCCCcccCCCCceeEEecccceEEE
Q 003395 559 EDQPIDASQRKWTAGASH-LSLSLETCTSITGSQNSNSGLWKCVELKDACIEV 610 (823)
Q Consensus 559 ~~qp~dasq~kw~~~as~-~~~~let~~~~~~~~~~~~~lw~cve~~~~~~e~ 610 (823)
=..+|++..=+|++.... +.+.|+=. ..+-|.|+.-.|..+-+
T Consensus 74 L~~~I~~e~S~w~i~~~k~v~i~L~K~---------~~~~W~~L~~~~~~id~ 117 (124)
T 1wgv_A 74 LTHKINTESSLWSLEPGKCVLVNLSKV---------GEYWWNAILEGEEPIDI 117 (124)
T ss_dssp BSSCBCTTTCEEEECTTSEEEEEECBS---------SSCCCSCSBTTSCCCSC
T ss_pred ccCcCCCcCCEEEEeCCCEEEEEEEEC---------CCCCCcCcccCCCccCh
Confidence 235888888899998765 88888753 24679998776655443
No 4
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=8.96 E-value=1.8e+02 Score=24.66 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=22.5
Q ss_pred cccccCHHHHHHHHHHHHHHHHhhcc
Q 003395 277 VCPALSEPGLRALLRFLSGLYVCLNR 302 (823)
Q Consensus 277 L~~~Lsd~QYrdlL~fl~sL~~~~~R 302 (823)
=++.|+.+||..+...+..++.++.+
T Consensus 40 KGIsL~~~qw~~l~~~~~~I~~ai~~ 65 (66)
T 1pcf_A 40 KGISLNPEQWSQLKEQISDIDDAVRK 65 (66)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999887653
No 5
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=8.14 E-value=1.5e+02 Score=28.71 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=36.5
Q ss_pred hHHHhhcCeEE------EEEEEEEEEEecCCCccCCCCCCCCcEEEEEEeeeEEEecCCCceeeccc
Q 003395 120 FADKIADGMTL------QVNTVNLLLVTRGGAQRDGGASWTPPMASITIRNLVLCTTNENWQVVNLK 180 (823)
Q Consensus 120 FitKIIDNLQV------~InnIHIRYED~~~~~t~gg~~~~PFsaGITLs~LsaqSTDenWqpsdL~ 180 (823)
++++++.+-.+ +++.|-|+|-|+..+...|| +||....+. ++.++.|+-..+.
T Consensus 20 lL~~~l~~~~~~~~~~~~~~~ltlNFRD~~YSae~GG--fHPVEIrl~------~~~~~~W~i~YIT 78 (147)
T 2w56_A 20 LLSKQLTAHLLSSEALTTSRYLVFNFRDKSYSADEGG--FHPVEMAIC------QTSTGEWSIEYIT 78 (147)
T ss_dssp HHHTTTHHHHSCSTTTTTCCEEEEEEECTTCBTTTBC--SCCEEEEEE------ECTTSCEEEEEEE
T ss_pred HHHHHHHhccccccCcccCcEEEEEcCCCCcCcccCC--cCCEEEEEE------ecCCCcEEEEEEE
Confidence 35555544444 56789999999877655555 799877754 4578999877544
No 6
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=8.05 E-value=88 Score=30.56 Aligned_cols=30 Identities=33% Similarity=0.648 Sum_probs=20.4
Q ss_pred eEEeeceeeccCcccceeecccCCCCceeeccCC
Q 003395 527 RLHIKKLFFSESPSLKLRLLHLEKDPACFCLWED 560 (823)
Q Consensus 527 rlhie~l~~~~sp~l~~~~l~l~~dpacf~~w~~ 560 (823)
-|||-...| +|. -++++. |++|++||.|.=
T Consensus 21 Eihi~~~~~--~~~-~l~~~~-d~~p~tF~t~dF 50 (156)
T 2yrb_A 21 EIHINKVTF--SSE-VLQASG-DKEPVTFCTYAF 50 (156)
T ss_dssp EEEEEEECC--CHH-HHHHHC-SSCCEEEEEECS
T ss_pred EEEEeEEEE--cHH-HHhhcc-ccCCcEEEEEEE
Confidence 379988887 332 233333 889999999863
No 7
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=6.42 E-value=80 Score=30.10 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=33.6
Q ss_pred cceeEEe-eceeeccCcccceeecccCCCCceeeccCCCCCccccccccccccceEEEEEeecCCCCcccCCCCceeEEe
Q 003395 524 AGARLHI-KKLFFSESPSLKLRLLHLEKDPACFCLWEDQPIDASQRKWTAGASHLSLSLETCTSITGSQNSNSGLWKCVE 602 (823)
Q Consensus 524 ~garlhi-e~l~~~~sp~l~~~~l~l~~dpacf~~w~~qp~dasq~kw~~~as~~~~~let~~~~~~~~~~~~~lw~cve 602 (823)
++|++|| ++.+|.-||..=.|-+.--.+++=+..=+.+....-||..-.=--| .+.+..+.|+|-=
T Consensus 29 ~~A~VH~V~g~vfLvsP~IF~~Y~~e~~~~~~~~~~~~~~~~~vQk~FEkL~lH-------------r~~~g~ni~~~~v 95 (135)
T 2ipq_X 29 ADACVHLTCGFVFISVPGVFFLFLKSHSRSCSSGLKESGRKEQVQAAFEKMRKH-------------RVSDSRRFWQCCL 95 (135)
T ss_dssp TTCSEEEETTEEEEETTHHHHHHHHHC-----------CHHHHHHHHHHTTCCS-------------CCBTTBCCEEEEE
T ss_pred CCCeEEEECCEEEEEChHHHHHHHHHcCccccccccchhHHHHHHHHHHHhccc-------------ccCCCccEEEEEE
Confidence 5899995 8999999987655555444333211111223333444444333333 1222468999953
No 8
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=6.23 E-value=1.6e+02 Score=28.83 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=10.3
Q ss_pred ccCceeecCCCc
Q 003395 470 LADGILVNHGAV 481 (823)
Q Consensus 470 ladgi~~~~~~~ 481 (823)
=.||||+|||+-
T Consensus 70 ~~dgiiINpgA~ 81 (151)
T 3u80_A 70 EKTPVVMNPAAF 81 (151)
T ss_dssp HTCCEEEECTTC
T ss_pred cCcEEEECcchh
Confidence 379999999984
No 9
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=5.68 E-value=1.6e+02 Score=29.45 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.6
Q ss_pred cCceeecCCCc
Q 003395 471 ADGILVNHGAV 481 (823)
Q Consensus 471 adgi~~~~~~~ 481 (823)
+||||+|||+-
T Consensus 95 ~dgIIINPgAy 105 (172)
T 3n8k_A 95 AEPVILNAGGL 105 (172)
T ss_dssp TCCEEEECGGG
T ss_pred CcEEEECcchh
Confidence 68888888863
No 10
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=5.60 E-value=1.5e+02 Score=28.96 Aligned_cols=12 Identities=42% Similarity=0.387 Sum_probs=10.2
Q ss_pred ccCceeecCCCc
Q 003395 470 LADGILVNHGAV 481 (823)
Q Consensus 470 ladgi~~~~~~~ 481 (823)
=.||||+|||+-
T Consensus 73 ~~dgiiINpgA~ 84 (153)
T 3lwz_A 73 NTDFILINPAAF 84 (153)
T ss_dssp TCSEEEEECGGG
T ss_pred cCceEEEccccc
Confidence 479999999974
Done!