Query 003395
Match_columns 823
No_of_seqs 144 out of 277
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 23:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003395.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003395hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyjb5 b.40.4.3 (B:2980-3117) 24.0 6 0.00044 35.9 -0.7 41 421-461 62-106 (138)
2 d1pn0a3 d.16.1.2 (A:241-341) P 15.2 40 0.0029 28.6 2.6 35 602-636 18-52 (101)
3 d2i76a2 c.2.1.6 (A:2-154) Hypo 11.2 90 0.0065 26.0 3.8 53 326-380 56-111 (153)
4 d2essa2 d.38.1.8 (A:150-247) A 8.1 81 0.0059 24.9 2.1 51 699-750 48-98 (98)
5 d1t47a1 d.32.1.3 (A:16-178) 4- 7.8 2.3E+02 0.016 23.6 5.1 37 325-361 7-43 (163)
6 d1dx5i1 g.3.11.1 (I:345-387) T 7.7 52 0.0038 24.3 0.6 17 438-454 3-19 (43)
7 d1ev0a_ d.71.1.1 (A:) Cell div 7.0 61 0.0045 25.3 0.7 21 6-27 13-33 (58)
8 d1h05a_ c.23.13.1 (A:) Type II 6.8 59 0.0043 29.1 0.6 15 467-481 63-77 (144)
9 d1r0ka3 d.81.1.3 (A:127-264) 1 6.7 65 0.0047 28.8 0.8 42 595-648 28-70 (138)
10 d1cc5a_ a.3.1.1 (A:) Cytochrom 6.1 1E+02 0.0073 23.6 1.6 17 280-296 67-83 (83)
No 1
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.01 E-value=6 Score=35.94 Aligned_cols=41 Identities=39% Similarity=0.463 Sum_probs=35.7
Q ss_pred ecCcceEEEeeccccc---CCCCCCccc-cceeeccceEEEeccc
Q 003395 421 NKGVPLICLHTLQVKP---SPAPPSFAS-RTVISCQPLMIHLQEE 461 (823)
Q Consensus 421 ~~~~p~~~~~~~q~~p---sp~pp~~as-~tvi~cqpl~i~lqe~ 461 (823)
...--+||.--||.+| |+.|-.||. +|+++|.|=.-||||+
T Consensus 62 vkp~~lia~SNLQwR~~s~s~vPtl~Age~s~FS~~PK~~Hlqe~ 106 (138)
T d1iyjb5 62 IKPRVLIAASNLQWRPESTSRVPTLFAGNFSVFSASPKEAHFQER 106 (138)
T ss_dssp CCTTCEEEEEEEEECCCTTCSSCEEEEEEEEEEESSCSSHHHHHH
T ss_pred cCcceEEEEeccEEccccCCCCceEEeeccceecCCccHHHHHHH
Confidence 3455699999999998 788999998 5899999999999996
No 2
>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=15.21 E-value=40 Score=28.61 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.3
Q ss_pred ecccceEEEEEEecCCCcceecCCCCcEEEEeeee
Q 003395 602 ELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVAC 636 (823)
Q Consensus 602 e~~~~~~e~am~t~dg~pl~~vpppggivr~gv~~ 636 (823)
++-|+..-.|.-|++.+-+|.+|--+|-||+.|.-
T Consensus 18 dFPDiR~~~~I~S~~~G~vl~IPRE~~l~R~Yv~l 52 (101)
T d1pn0a3 18 NFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQL 52 (101)
T ss_dssp CCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEE
T ss_pred CCCCCceEEEEEeCCCCcEEEEECCCCcEEEEEEc
Confidence 35577777888898877799999999999999964
No 3
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}
Probab=11.17 E-value=90 Score=26.04 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=27.5
Q ss_pred eeeEEEeeechhHHHHHHhhhcccce---eeeccccccccccceeeeeeeeeccCCCC
Q 003395 326 VDHIFLCIKDAEFQLELLMQSLFFSR---ATVSDGETASNLTKITVAGLFLRDTFSRP 380 (823)
Q Consensus 326 v~~~fl~ikd~~f~~e~l~~~~~~~r---a~~~~~~~~~~l~~i~~~~lflrd~f~~p 380 (823)
.|-||||++|...+ =+...|-... .+.+-+.....+....-++.+.-++|+.+
T Consensus 56 ~DiVil~v~d~~i~--~v~~~l~~~~~ivi~~s~~~~~~~l~~~~~~~~~~~~~~~~~ 111 (153)
T d2i76a2 56 NGVVFVIVPDRYIK--TVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSL 111 (153)
T ss_dssp --CEEECSCTTTHH--HHHTTTCCSSCCEEECCSSSCGGGGCSSSEEEEEECSCC--C
T ss_pred CcEEEEeccchhhh--HHHhhhcccceeeeecccchhhhhhhhhccccceeeeecccc
Confidence 48899999997653 3444443222 23444445555555555666555555444
No 4
>d2essa2 d.38.1.8 (A:150-247) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=8.06 E-value=81 Score=24.95 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=33.9
Q ss_pred eeccceeeeeccccCCcCCCceeEEeccceeEEEeecccceeEEEeeeeeee
Q 003395 699 AVKDLQLRFLEPSSMNIEGMPLVQFVGEDMFIKVTHRTLGGAVAVSSTILWE 750 (823)
Q Consensus 699 ~~~~l~~~fle~~~~~~~~~plvqf~g~~~~~~~thrtlgga~~vss~l~w~ 750 (823)
.++++++.|+.+...+.+=--..+.+|++-+- ++=+.-||-.++.....|+
T Consensus 48 ~v~~i~i~Y~~e~~~gd~v~v~t~~~~~~~~~-~~~~~~g~e~~~~a~~~w~ 98 (98)
T d2essa2 48 RIRRFEMAYVAESYFGDELSFFCDEVSENEFH-VEVKKNGSEVVCRSKVIFE 98 (98)
T ss_dssp CEEEEEEEECSCCBTTCEEEEEEEEEETTEEE-EEEEETTTEEEEEEEEEEC
T ss_pred ceeEEEEEEcCccCCCCEEEEEEEEccCcEEE-EEEEEcCCEEEEEEEEEEC
Confidence 46788999999887665422234455555443 3333458888888888886
No 5
>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}
Probab=7.75 E-value=2.3e+02 Score=23.59 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=30.2
Q ss_pred EeeeEEEeeechhHHHHHHhhhcccceeeeccccccc
Q 003395 325 VVDHIFLCIKDAEFQLELLMQSLFFSRATVSDGETAS 361 (823)
Q Consensus 325 ~v~~~fl~ikd~~f~~e~l~~~~~~~ra~~~~~~~~~ 361 (823)
.+|||=++++|+|=-+.+.-+-|=|....-.+.+...
T Consensus 7 ~idHv~i~V~D~~~a~~fY~~~lGf~~v~~~~~~~~~ 43 (163)
T d1t47a1 7 GMDAVVFAVGNAKQAAHYYSTAFGMQLVAYSGPENGS 43 (163)
T ss_dssp EEEEEEEECSCHHHHHHHHHHTSCCEEEEEESGGGTC
T ss_pred eEeEEEEEeCCHHHHHHHHHHHhCCeEEeeecccccc
Confidence 5899999999999999999999988776655554443
No 6
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.72 E-value=52 Score=24.26 Aligned_cols=17 Identities=41% Similarity=0.890 Sum_probs=15.7
Q ss_pred CCCCCccccceeeccce
Q 003395 438 PAPPSFASRTVISCQPL 454 (823)
Q Consensus 438 p~pp~~as~tvi~cqpl 454 (823)
|+-|+|-++---||||+
T Consensus 3 ~vDPCf~~~CE~qCqP~ 19 (43)
T d1dx5i1 3 PVDPCFRANCEYQCQPL 19 (43)
T ss_dssp CCCGGGGCCCSSEEEEC
T ss_pred ccccccCCCcceeeeeC
Confidence 78899999999999997
No 7
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=6.96 E-value=61 Score=25.25 Aligned_cols=21 Identities=0% Similarity=0.112 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhhcCCCccCcee
Q 003395 6 ARALEYTFKYWLKSFSRDQFKL 27 (823)
Q Consensus 6 a~lLnr~LgkYVKNLdpDQLnL 27 (823)
..=|...++|||+ .++|++++
T Consensus 13 q~eil~VI~KyV~-Id~d~v~V 33 (58)
T d1ev0a_ 13 RKDILEVICKYVQ-IDPEMVTV 33 (58)
T ss_dssp HHHHHHHHHHHSC-CCGGGEEE
T ss_pred HHHHHHHHHHhEe-ecHHHeEE
Confidence 3445678899998 99999988
No 8
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.82 E-value=59 Score=29.09 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=11.7
Q ss_pred hhhccCceeecCCCc
Q 003395 467 SSFLADGILVNHGAV 481 (823)
Q Consensus 467 ~sfladgi~~~~~~~ 481 (823)
+.-=+||||+|||+-
T Consensus 63 ~~~~~dgiIiNPga~ 77 (144)
T d1h05a_ 63 AADAAEPVILNAGGL 77 (144)
T ss_dssp HHHHTCCEEEECGGG
T ss_pred HhhccCcceeccccc
Confidence 344489999999975
No 9
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}
Probab=6.66 E-value=65 Score=28.84 Aligned_cols=42 Identities=12% Similarity=0.390 Sum_probs=31.2
Q ss_pred CCceeEEecccc-eEEEEEEecCCCcceecCCCCcEEEEeeeeeecccccceeeh
Q 003395 595 SGLWKCVELKDA-CIEVAMVSADGKPLTVVPPPGGVVRIGVACQQYLSNTSVEQL 648 (823)
Q Consensus 595 ~~lw~cve~~~~-~~e~am~t~dg~pl~~vpppggivr~gv~~~~~~sn~s~eql 648 (823)
..+|+|.+-.+. .|+-..+||-|+|+.+.|. .-+.+.|+||.
T Consensus 28 ~AI~Q~L~~~~~~~I~kI~LTASGGPF~~~~~------------~~l~~vt~~~a 70 (138)
T d1r0ka3 28 NAIFQCFPHHNRDYVRRIIITASGGPFRTTSL------------AEMATVTPERA 70 (138)
T ss_dssp HHHHHHCCTTCGGGEEEEEEEECCCTTTTCCH------------HHHTTCCHHHH
T ss_pred HHHHHHHhhcCcccccEEEEeccchhhhcchH------------HHhhcCCHHHH
Confidence 468999876554 5999999999999988763 23566666664
No 10
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=6.07 E-value=1e+02 Score=23.59 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=15.3
Q ss_pred ccCHHHHHHHHHHHHHH
Q 003395 280 ALSEPGLRALLRFLSGL 296 (823)
Q Consensus 280 ~Lsd~QYrdlL~fl~sL 296 (823)
.||+.|+.+++.++.+|
T Consensus 67 ~Lsd~ei~~vv~Yi~~L 83 (83)
T d1cc5a_ 67 DCSDDELKAAIGKMSGL 83 (83)
T ss_dssp SCCHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhhC
Confidence 59999999999999875
Done!