Query 003396
Match_columns 823
No_of_seqs 132 out of 188
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 22:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2072 Translation initiation 100.0 1E-233 3E-238 1951.7 89.6 799 1-819 1-826 (988)
2 PF01399 PCI: PCI domain; Int 98.9 5.8E-09 1.3E-13 94.4 11.0 74 436-510 32-105 (105)
3 smart00088 PINT motif in prote 98.9 1.1E-08 2.4E-13 91.1 9.5 86 441-530 1-86 (88)
4 smart00753 PAM PCI/PINT associ 98.9 1.1E-08 2.4E-13 91.1 9.5 86 441-530 1-86 (88)
5 KOG2072 Translation initiation 98.1 0.03 6.6E-07 67.4 38.4 58 408-478 435-493 (988)
6 PTZ00121 MAEBL; Provisional 97.8 0.018 3.8E-07 72.5 29.8 16 375-390 814-829 (2084)
7 PTZ00121 MAEBL; Provisional 97.0 0.9 1.9E-05 58.2 31.5 18 72-89 431-448 (2084)
8 KOG1498 26S proteasome regulat 95.5 0.82 1.8E-05 51.9 18.0 133 370-536 286-420 (439)
9 KOG1029 Endocytic adaptor prot 94.8 14 0.0003 45.5 29.8 21 545-565 317-337 (1118)
10 COG5071 RPN5 26S proteasome re 93.3 0.33 7.2E-06 53.4 8.6 92 440-536 329-420 (439)
11 KOG0163 Myosin class VI heavy 92.4 13 0.00029 45.5 20.5 23 517-539 865-887 (1259)
12 KOG1497 COP9 signalosome, subu 92.3 1.3 2.9E-05 49.2 11.5 184 268-510 178-362 (399)
13 KOG2581 26S proteasome regulat 90.0 43 0.00094 38.9 21.5 69 440-508 353-421 (493)
14 KOG1144 Translation initiation 89.5 3.4 7.5E-05 50.4 12.3 61 559-619 217-277 (1064)
15 PF10075 PCI_Csn8: COP9 signal 87.9 1.3 2.8E-05 43.3 6.5 52 436-488 69-120 (143)
16 PTZ00266 NIMA-related protein 87.6 6.2 0.00013 50.5 13.5 9 123-131 151-159 (1021)
17 KOG0163 Myosin class VI heavy 86.9 24 0.00051 43.5 16.8 24 515-538 891-914 (1259)
18 KOG2582 COP9 signalosome, subu 86.4 3.4 7.4E-05 46.8 9.2 65 446-513 299-363 (422)
19 KOG2753 Uncharacterized conser 85.9 34 0.00074 38.7 16.3 248 235-511 49-340 (378)
20 KOG1464 COP9 signalosome, subu 82.1 16 0.00034 40.3 11.6 78 435-513 335-412 (440)
21 KOG1029 Endocytic adaptor prot 81.8 1.5E+02 0.0032 37.1 30.8 18 750-767 564-581 (1118)
22 KOG1076 Translation initiation 80.3 1.6E+02 0.0035 36.5 23.1 254 163-511 482-764 (843)
23 KOG2908 26S proteasome regulat 78.3 1.3E+02 0.0028 34.3 24.4 234 243-536 127-364 (380)
24 KOG1144 Translation initiation 75.0 12 0.00026 46.0 9.0 62 564-628 216-277 (1064)
25 KOG4661 Hsp27-ERE-TATA-binding 72.9 43 0.00093 40.0 12.4 23 553-575 597-619 (940)
26 KOG2412 Nuclear-export-signal 69.9 65 0.0014 38.5 13.1 27 429-455 80-106 (591)
27 KOG3054 Uncharacterized conser 63.6 1E+02 0.0022 33.5 12.0 68 602-675 143-213 (299)
28 KOG3462 Predicted membrane pro 63.5 15 0.00033 34.0 5.2 61 271-331 30-91 (105)
29 KOG2758 Translation initiation 62.7 2.8E+02 0.0061 31.7 21.9 60 454-514 339-398 (432)
30 KOG4364 Chromatin assembly fac 62.6 2E+02 0.0044 35.4 15.3 32 791-822 340-375 (811)
31 KOG3654 Uncharacterized CH dom 62.0 45 0.00099 39.3 9.7 44 564-607 390-433 (708)
32 PF07946 DUF1682: Protein of u 59.0 84 0.0018 35.2 11.2 25 451-475 181-205 (321)
33 KOG2412 Nuclear-export-signal 57.9 1.6E+02 0.0034 35.5 13.2 17 450-466 133-149 (591)
34 PRK13454 F0F1 ATP synthase sub 52.0 2.8E+02 0.0062 28.4 16.0 69 494-563 10-80 (181)
35 COG5159 RPN6 26S proteasome re 49.6 91 0.002 35.0 9.1 125 373-514 261-392 (421)
36 KOG3054 Uncharacterized conser 47.9 91 0.002 33.9 8.6 18 802-819 158-175 (299)
37 KOG0687 26S proteasome regulat 47.1 3.4E+02 0.0074 31.1 13.1 69 437-510 294-362 (393)
38 KOG2002 TPR-containing nuclear 47.0 1.2E+02 0.0026 38.8 10.5 26 49-75 164-189 (1018)
39 PRK00409 recombination and DNA 46.0 5.8E+02 0.013 32.4 16.6 33 550-582 518-550 (782)
40 PF07946 DUF1682: Protein of u 45.5 92 0.002 34.9 8.8 21 755-775 257-277 (321)
41 PRK09510 tolA cell envelope in 44.9 4.7E+02 0.01 30.5 14.3 6 535-540 54-59 (387)
42 KOG1463 26S proteasome regulat 39.3 2.5E+02 0.0054 32.3 10.6 125 374-512 265-392 (411)
43 KOG4848 Extracellular matrix-a 37.3 5.3E+02 0.011 27.3 13.3 58 716-773 141-198 (225)
44 KOG4661 Hsp27-ERE-TATA-binding 36.3 2.5E+02 0.0054 34.1 10.4 17 675-691 736-752 (940)
45 KOG2891 Surface glycoprotein [ 35.8 6.6E+02 0.014 28.0 15.6 25 370-394 171-195 (445)
46 PRK09550 mtnK methylthioribose 35.6 1.6E+02 0.0035 34.2 9.0 121 126-264 264-397 (401)
47 KOG2688 Transcription-associat 35.2 72 0.0016 37.0 5.9 69 446-514 312-389 (394)
48 KOG3634 Troponin [Cytoskeleton 33.9 2.1E+02 0.0046 32.4 9.0 35 748-782 85-119 (361)
49 PF14561 TPR_20: Tetratricopep 33.6 1.1E+02 0.0024 27.9 5.8 49 7-57 22-71 (90)
50 KOG3654 Uncharacterized CH dom 33.6 1.7E+02 0.0036 34.9 8.5 35 573-608 409-443 (708)
51 COG3064 TolA Membrane protein 32.7 5.1E+02 0.011 29.5 11.5 18 590-607 101-118 (387)
52 PF11817 Foie-gras_1: Foie gra 31.9 73 0.0016 34.1 5.2 48 10-57 181-228 (247)
53 CHL00119 atpD ATP synthase CF1 31.7 4.1E+02 0.0089 27.1 10.4 150 374-533 13-183 (184)
54 PF03669 UPF0139: Uncharacteri 31.5 75 0.0016 30.1 4.5 60 272-331 30-90 (103)
55 PF10187 Nefa_Nip30_N: N-termi 31.2 1.6E+02 0.0034 27.9 6.6 63 714-777 36-98 (102)
56 KOG2002 TPR-containing nuclear 30.4 5.1E+02 0.011 33.5 12.3 13 611-623 863-875 (1018)
57 CHL00019 atpF ATP synthase CF0 29.8 6.2E+02 0.013 25.9 19.8 50 514-563 23-73 (184)
58 PF07079 DUF1347: Protein of u 29.6 1.1E+03 0.023 28.5 14.1 152 11-192 383-545 (549)
59 PF13076 DUF3940: Protein of u 29.6 54 0.0012 25.7 2.6 24 374-400 3-26 (38)
60 TIGR02838 spore_V_AC stage V s 29.3 97 0.0021 31.0 5.0 56 266-329 10-67 (141)
61 PF13428 TPR_14: Tetratricopep 29.3 81 0.0018 24.3 3.7 30 7-36 1-30 (44)
62 PRK00247 putative inner membra 29.2 9.5E+02 0.02 28.4 13.7 13 474-486 141-153 (429)
63 TIGR01069 mutS2 MutS2 family p 28.0 1.3E+03 0.029 29.2 15.7 14 230-243 226-239 (771)
64 PF05672 MAP7: MAP7 (E-MAP-115 28.0 7E+02 0.015 25.9 17.0 33 667-701 119-151 (171)
65 COG4857 Predicted kinase [Gene 27.8 4E+02 0.0086 30.3 9.7 118 127-263 270-404 (408)
66 PF14559 TPR_19: Tetratricopep 27.3 77 0.0017 25.9 3.5 56 17-78 1-56 (68)
67 COG0712 AtpH F0F1-type ATP syn 26.7 6.4E+02 0.014 26.0 10.7 148 372-529 10-177 (178)
68 KOG4673 Transcription factor T 26.0 1.4E+03 0.031 28.8 30.6 15 143-157 63-77 (961)
69 COG3124 Uncharacterized protei 25.8 2.2E+02 0.0048 29.3 6.8 56 231-286 116-179 (193)
70 PF05262 Borrelia_P83: Borreli 25.7 1.2E+03 0.027 28.0 18.3 34 437-471 104-137 (489)
71 COG3556 Predicted membrane pro 25.5 80 0.0017 31.3 3.6 36 275-333 55-97 (150)
72 KOG4414 COP9 signalosome, subu 25.5 1.1E+02 0.0025 30.9 4.7 47 440-487 108-154 (197)
73 PRK00247 putative inner membra 25.0 5.8E+02 0.012 30.2 11.0 18 392-411 89-106 (429)
74 KOG0686 COP9 signalosome, subu 24.6 1.2E+03 0.027 27.6 19.4 74 436-511 337-411 (466)
75 TIGR01767 MTRK 5-methylthiorib 24.3 4.5E+02 0.0098 30.4 9.9 119 127-263 234-367 (370)
76 PF13170 DUF4003: Protein of u 24.2 8.9E+02 0.019 27.0 12.0 52 273-327 81-150 (297)
77 KOG4001 Axonemal dynein light 23.7 6.5E+02 0.014 26.9 9.9 60 557-629 183-242 (259)
78 PLN03086 PRLI-interacting fact 23.4 3.8E+02 0.0082 32.7 9.4 7 633-639 63-69 (567)
79 PRK00409 recombination and DNA 22.8 1.6E+03 0.035 28.4 15.2 12 231-242 232-243 (782)
80 TIGR01069 mutS2 MutS2 family p 21.6 1.7E+03 0.037 28.2 15.4 29 551-579 514-542 (771)
81 PRK13436 F0F1 ATP synthase sub 21.0 9E+02 0.019 24.7 11.1 149 372-530 10-178 (179)
82 PF11728 DUF939_C: DUF939 C-te 20.9 8.9E+02 0.019 24.6 14.6 89 221-322 62-151 (167)
83 TIGR03504 FimV_Cterm FimV C-te 20.6 1.3E+02 0.0028 24.2 3.3 26 11-36 3-28 (44)
No 1
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-233 Score=1951.68 Aligned_cols=799 Identities=49% Similarity=0.776 Sum_probs=762.9
Q ss_pred CCC-CCChhhHHHhHHHHHhcCChHHHHHHHHHHHhcccccchhchHHHHHHHHHHHHhhcccccchhhhhHHHHHhhhc
Q 003396 1 MST-YAKPEAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQQ 79 (823)
Q Consensus 1 M~~-~~kPEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLCVel~kg~~aKdgL~QYk~~~Q~ 79 (823)
||+ |+|||||||||+|||+||++++|||+|||+|++||+|+|+++||||||+|++|||+|+||++||||||||||+||+
T Consensus 1 Ma~y~~kPENALKRAdElI~VGkkq~ALqsLhd~i~~kr~r~~q~~~EpIMfKyleLCVdLkKg~lAKdGL~QYk~~~Qq 80 (988)
T KOG2072|consen 1 MAPYFQKPENALKRADELIEVGKKQDALQSLHDTITAKRHRWWQTVLEPIMFKYLELCVDLKKGHLAKDGLFQYKNLCQQ 80 (988)
T ss_pred CCCCCCCcHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 665 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCChhHHHHHhhcCccccCcccccccchHHHHHHHHHH
Q 003396 80 VNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYR 159 (823)
Q Consensus 80 ~nv~SLe~Vi~~fl~lae~K~~~Aq~ka~~~~~~~~vdDLE~~~TPE~lLlsavs~e~~~drtdr~~vtPwlkFLWEsYR 159 (823)
+||.|||+||+|||++|++|+++||.+|++++.++++||||++.||||||||+|||++++|||||++|||||||||||||
T Consensus 81 vnv~SlE~VvrhflklAe~kte~Aq~qad~l~~ve~vdDLe~~~tPEslllSvVsGe~sqdR~DR~lltPWlkFLWeSYR 160 (988)
T KOG2072|consen 81 VNVKSLENVVRHFLKLAEEKTEAAQEQADELQKVEEVDDLEAGVTPESLLLSVVSGEDSQDRSDRELLTPWLKFLWESYR 160 (988)
T ss_pred hchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCChHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHH
Q 003396 160 TVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLK 239 (823)
Q Consensus 160 ~vLdiLRnN~kLE~lY~~ta~~Af~FClkY~RktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~ 239 (823)
+||||||||++||.+||+||++||+||+||+||||||||||+||+||++++|++++++.||||||||+|+||||||.||+
T Consensus 161 ~vLdlLRNNa~lE~lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~~v~Ln~~Etlql~LDtRf~QLd 240 (988)
T KOG2072|consen 161 TVLDLLRNNARLEALYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQSTRVDLNDPETLQLYLDTRFQQLD 240 (988)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHH
Q 003396 240 VATDLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLI 319 (823)
Q Consensus 240 ~Av~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~s~ee~~~~ 319 (823)
|||+||||||||||||||||||++||+||||++|+|||+||++|||+|||+||||+||+|||.|+|++|||+|++|++.|
T Consensus 241 vAi~lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K~~Tqde~q~~ 320 (988)
T KOG2072|consen 241 VAIELELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNKNLTQDELQRM 320 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCC-CCCccchhhhhhh-HhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHH
Q 003396 320 ASSVVLAALLVVPYD-RSRSASHLELENE-KDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDL 397 (823)
Q Consensus 320 AS~vlLAaLsIP~~~-~~~~~~~~~~d~~-~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~L 397 (823)
||+|||||||||+++ ++.++..++.|.. ++|+.|||+||||+.+ |||.+||+++++.||+++|+++|++|
T Consensus 321 as~VlLaaLSIP~~~~~~~~~r~~e~e~~~~ek~~rla~LL~L~~~--------PTR~~ll~e~v~~gV~~~v~qe~kdL 392 (988)
T KOG2072|consen 321 ASRVLLAALSIPIPDARSDSARLIEIEDIGKEKNLRLANLLGLPAP--------PTRKGLLKEAVREGVLSKVDQEVKDL 392 (988)
T ss_pred HHHHHHHHhcCCCCCcccccccccccccchhhHHHHHHHHhCCCCC--------ccHHHHHHHHHHhccHhhhhHHHHHH
Confidence 999999999999764 4445555666655 9999999999999986 99999999999999999999999999
Q ss_pred HHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCC
Q 003396 398 YNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFF 477 (823)
Q Consensus 398 Y~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~ 477 (823)
|+|||++||||+||++|+|||++|++ .|+.+|||+||++||++|+|+|+||||+||++++|++|+||+
T Consensus 393 Y~iLEveF~PL~l~k~lq~ll~~ls~------------~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~ 460 (988)
T KOG2072|consen 393 YNILEVEFHPLKLCKKLQPLLDKLSE------------SPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFF 460 (988)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHc------------CCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc
Confidence 99999999999999999999999997 478899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC----------------CCchhhhHHHHHHHHHHHHHHhhhCCchh
Q 003396 478 DFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG----------------LESDGLRDHLTIFAQSLNKVRALIYPPAN 541 (823)
Q Consensus 478 ~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~----------------~~s~~ir~qL~~la~~L~~~~~~i~p~~~ 541 (823)
++++||++||+|+++|+|+|+|||.+|||+||+|. ++|+.||+||+.||.+|..++.++||...
T Consensus 461 ~~~~lEk~~v~a~k~~~v~iriDH~~~~v~FgsDl~~s~~~~~~eg~~lqs~~sE~ir~~L~~m~~~L~~~~e~~dp~~~ 540 (988)
T KOG2072|consen 461 SAFELEKLLVEAAKHNDVSIRIDHESNSVSFGSDLFLSKEEDEPEGPELQSMPSEGIRSQLTAMAESLSKVVEELDPVII 540 (988)
T ss_pred CHHHHHHHHHHHHhccceeEEeccccceeeeccccccccccccCCCchhhcCchHhHHHHHHHHHHHHHHHHHhhChHHH
Confidence 99999999999999999999999999999999874 46889999999999999999999999743
Q ss_pred h---hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 542 K---ASKLGEMLAGLGEIVDKEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQ 618 (823)
Q Consensus 542 ~---~~~~~~~~~~~~~~~~~eh~~~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~e 618 (823)
. .+....++.++..+++.||+++++|+++||+|||.+|+++.+++++++.++...+++.+++|++|+.+|..+|+.+
T Consensus 541 r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~ 620 (988)
T KOG2072|consen 541 RNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAK 620 (988)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 5667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-h-ccCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 003396 619 RILREIEERELEEAQALLEEAEKRN-K-KKGGKKPILEGEKVTKQTLMERALTEQLRERQEMEKKLQKLAKTMDYLERAK 696 (823)
Q Consensus 619 r~~~E~e~~~~~e~~~~l~~~~k~~-~-~~~~~~~~~~~~~ld~~~l~~~~~~~~~Kek~E~~~kl~~~~Kr~Dh~eRA~ 696 (823)
|+++|++.|+.+++++.+..|+.+. | ++|.++|++++++||+|.|+++++++++|+++||+.||+.++|+|||+|||+
T Consensus 621 R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 621 RILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999998664 4 4556799999999999999999999999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 697 REEAAPLIDAAFQQRLEEEKVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVEREER 776 (823)
Q Consensus 697 R~eE~pll~~~~~~~~~~d~~~~e~~~~~~~~~ak~~he~~l~~k~rL~r~~~d~~~f~~~i~~~r~~ef~~~~~e~~~r 776 (823)
|+|||||++++|.+++++|+++|+..++++++.+.++|+.+|++|+||++|++|+..|++.|...|+++|++....++++
T Consensus 701 R~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~ 780 (988)
T KOG2072|consen 701 RLEEIPLIEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEAR 780 (988)
T ss_pred HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 003396 777 ISL---IIKARKQEREAKRKKIFYVRTEEEKIKRLREEEEARKREG 819 (823)
Q Consensus 777 l~~---~~~~r~~er~~~Rr~~~~r~~eEer~~~~~eeee~~~~~e 819 (823)
|+. +.++|+.+|..+||..++++.||++.+++.|+..+.+.++
T Consensus 781 leaer~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~~ae~~ee 826 (988)
T KOG2072|consen 781 LEAERNRLAERKRARIEERKQAYYREIEEERARREEEEANAERQEE 826 (988)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 995 4567777788888889999999988555555444444443
No 2
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=98.95 E-value=5.8e-09 Score=94.42 Aligned_cols=74 Identities=28% Similarity=0.512 Sum_probs=68.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003396 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 436 ~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
++.+..|++.|...+..+.|.+++++|++|+++.+.+.+.+ +..++|.+|++++.+|.|..+|||.+|+|+|+.
T Consensus 32 ~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~-~~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 32 DPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQL-SEEEVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhcc-chHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 57889999999999999999999999999999999999864 559999999999999999999999999999974
No 3
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=98.86 E-value=1.1e-08 Score=91.12 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhhhH
Q 003396 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRD 520 (823)
Q Consensus 441 ~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~ 520 (823)
+|+++|.+.+..+.|.++++.|++|+++.+.+.+++.. .++|.+|++++..|.|..+|||.+|+|+|+.++-.. .+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~-~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~---~~ 76 (88)
T smart00088 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSV-PEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR---SE 76 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCH-HHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh---hh
Confidence 48899999999999999999999999999999987654 479999999999999999999999999999765543 56
Q ss_pred HHHHHHHHHH
Q 003396 521 HLTIFAQSLN 530 (823)
Q Consensus 521 qL~~la~~L~ 530 (823)
+++.+...|.
T Consensus 77 ~~~~~~~~l~ 86 (88)
T smart00088 77 PLAQFAETLK 86 (88)
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 4
>smart00753 PAM PCI/PINT associated module.
Probab=98.86 E-value=1.1e-08 Score=91.12 Aligned_cols=86 Identities=27% Similarity=0.454 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhhhH
Q 003396 441 RYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRD 520 (823)
Q Consensus 441 ~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~ 520 (823)
+|+++|.+.+..+.|.++++.|++|+++.+.+.+++.. .++|.+|++++..|.|..+|||.+|+|+|+.++-.. .+
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~-~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~---~~ 76 (88)
T smart00753 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSV-PEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR---SE 76 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCH-HHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh---hh
Confidence 48899999999999999999999999999999987654 479999999999999999999999999999765543 56
Q ss_pred HHHHHHHHHH
Q 003396 521 HLTIFAQSLN 530 (823)
Q Consensus 521 qL~~la~~L~ 530 (823)
+++.+...|.
T Consensus 77 ~~~~~~~~l~ 86 (88)
T smart00753 77 PLAQFAETLK 86 (88)
T ss_pred HHHHHHHHhh
Confidence 7777766654
No 5
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=0.03 Score=67.43 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=38.6
Q ss_pred hhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHh-HhceeehhhhhhccCCCC
Q 003396 408 LDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQQVSE-VYQMMRIESLSQMIPFFD 478 (823)
Q Consensus 408 l~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSq-vY~ti~i~~l~~l~~f~~ 478 (823)
+.+-++|+.+...|+- ..+.+-+|.+.---+-|++.+.+. -|-+|.|||-..-+.|-|
T Consensus 435 ~RllqQvSqiY~sIs~-------------~~l~~La~F~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fgs 493 (988)
T KOG2072|consen 435 LRLLQQVSQIYESISF-------------ERLYKLAPFFSAFELEKLLVEAAKHNDVSIRIDHESNSVSFGS 493 (988)
T ss_pred HHHHHHHHHHHHHHhH-------------HHHHHHHhhcCHHHHHHHHHHHHhccceeEEeccccceeeecc
Confidence 3455566666666653 455555666666667777766554 577899999998888864
No 6
>PTZ00121 MAEBL; Provisional
Probab=97.79 E-value=0.018 Score=72.55 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCcccc
Q 003396 375 SSLLSELVSKGVMSCA 390 (823)
Q Consensus 375 ~~Ll~~l~~~~vl~~a 390 (823)
.+||+.|....|+++.
T Consensus 814 p~lIknL~DCSiySyC 829 (2084)
T PTZ00121 814 PGLIKNLFDCSIYSYC 829 (2084)
T ss_pred hHhhcCHhhhhHHHhh
Confidence 4788888888777654
No 7
>PTZ00121 MAEBL; Provisional
Probab=97.02 E-value=0.9 Score=58.23 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=11.6
Q ss_pred HHHHhhhccCcCcHHHHH
Q 003396 72 QYRIVCQQVNVTSLEEVI 89 (823)
Q Consensus 72 QYk~~~Q~~nv~SLe~Vi 89 (823)
.|....|+.+..-|+++.
T Consensus 431 n~fd~~Qni~yp~iee~~ 448 (2084)
T PTZ00121 431 NSFDFAQNIIYPELEEMH 448 (2084)
T ss_pred cccccccccccchHHHhh
Confidence 355566777777777664
No 8
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.82 Score=51.94 Aligned_cols=133 Identities=17% Similarity=0.274 Sum_probs=96.8
Q ss_pred ccccHHHHHHHHHHcCCcccccHHHHHHHHH-Hhhc-CChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHH
Q 003396 370 EALSRSSLLSELVSKGVMSCATQEVKDLYNL-LEHE-FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALE 447 (823)
Q Consensus 370 ~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~l-LE~~-f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L~ 447 (823)
++|+-..|++-.+.+-+...+ -+.+-|.- |..+ |.. + ...=..|...|+
T Consensus 286 e~p~~k~lLklfv~~EL~rw~--s~~~~yg~~l~~~~~~~--------------~-------------~~~gek~~~dL~ 336 (439)
T KOG1498|consen 286 ELPDYKELLKLFVTMELIRWV--SLVESYGDELRTNDFFD--------------G-------------GEEGEKRWSDLK 336 (439)
T ss_pred cCccHHHHHHHHHhcceeeeh--hHhhhhHHHHhhccccc--------------c-------------cchhhhHHHHHH
Confidence 469999999999988776555 34444432 2222 110 1 234467888888
Q ss_pred HHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhhhHHHHHHHH
Q 003396 448 KLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRDHLTIFAQ 527 (823)
Q Consensus 448 ~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~qL~~la~ 527 (823)
.-|+--=+.-++.+|+.|++.++..+.. .+..++|++|-+.+..|.+.++||-.+|+|.|....-++ .+|..-|.
T Consensus 337 ~RIiEHNiRiiA~yYSrIt~~rl~eLLd-l~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~K~~~----~~LneW~~ 411 (439)
T KOG1498|consen 337 LRIIEHNIRIIAKYYSRITLKRLAELLD-LPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKVKDSN----EILNEWAS 411 (439)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhC-CCHHHHHHHHHHHHhccceEEEecCCCceEEEEecccHH----HHHHHHHh
Confidence 8888888899999999999999998865 478899999999999999999999999999999654443 34444444
Q ss_pred HHHHHHhhh
Q 003396 528 SLNKVRALI 536 (823)
Q Consensus 528 ~L~~~~~~i 536 (823)
.+.+.+..+
T Consensus 412 nve~L~~ll 420 (439)
T KOG1498|consen 412 NVEKLLGLL 420 (439)
T ss_pred hHHHHHHHH
Confidence 444444433
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=14 Score=45.48 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003396 545 KLGEMLAGLGEIVDKEHKRLL 565 (823)
Q Consensus 545 ~~~~~~~~~~~~~~~eh~~~l 565 (823)
+|...|.+-...+++-++.++
T Consensus 317 KrkeNy~kGqaELerRRq~le 337 (1118)
T KOG1029|consen 317 KRKENYEKGQAELERRRQALE 337 (1118)
T ss_pred hhHHhHhhhhHHHHHHHHHHH
Confidence 344555555555554444443
No 10
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.33 Score=53.35 Aligned_cols=92 Identities=12% Similarity=0.206 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhhh
Q 003396 440 SRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLR 519 (823)
Q Consensus 440 ~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir 519 (823)
..|.+-|++-++---|.-+|..|++|+..+|.-+.. +++.++|++|-+.+++|.+.++|+..+|.|.|....-. .
T Consensus 329 ~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld-~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~~n~----~ 403 (439)
T COG5071 329 EKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLD-MSPSETEQFISDLVNKGHFYAKINRPAQIISFEKSQNV----Q 403 (439)
T ss_pred hhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHc-CCHHHHHHHHHHHHhcCcEEEEecCccceEEeeccccH----H
Confidence 478888888888888999999999999999987754 68999999999999999999999999999999975433 3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 003396 520 DHLTIFAQSLNKVRALI 536 (823)
Q Consensus 520 ~qL~~la~~L~~~~~~i 536 (823)
.+|..-+......+..+
T Consensus 404 ~~lneW~~NV~ellgkl 420 (439)
T COG5071 404 EQLNEWGSNVTELLGKL 420 (439)
T ss_pred HHHHHhcccHHHHHHHH
Confidence 45555554444444433
No 11
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=92.45 E-value=13 Score=45.52 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhCCc
Q 003396 517 GLRDHLTIFAQSLNKVRALIYPP 539 (823)
Q Consensus 517 ~ir~qL~~la~~L~~~~~~i~p~ 539 (823)
.+..+...+...|...+..|..+
T Consensus 865 e~~~~~~~~~~~id~lv~~IK~~ 887 (1259)
T KOG0163|consen 865 EIISGANSTYRQIDDLVKKIKMP 887 (1259)
T ss_pred HHHhhhhhHHHHHHHHHHHhccc
Confidence 35555556666666666666543
No 12
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.30 E-value=1.3 Score=49.18 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=110.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHH-HHHHHHHHHHHhhccCCCCCCCccchhhhhh
Q 003396 268 PKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKD-LQLIASSVVLAALLVVPYDRSRSASHLELEN 346 (823)
Q Consensus 268 pkp~~ma~YYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~s~ee-~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~ 346 (823)
..|.+...|=---|+|.=..+-++=.|- +||.+.- .+...+-+ ++.+++.+..-.||+|-+-++
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAq---rYyels~--~ki~~e~~~~~aL~~a~~CtlLA~~gpqrs---------- 242 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKRKFLEAAQ---RYYELSQ--RKIVDESERLEALKKALQCTLLASAGPQRS---------- 242 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHhcchHHHHHHHHHhHhheeecCCChHHH----------
Confidence 4456655555445555544444444443 4555542 23344433 566788888888888864322
Q ss_pred hHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHHHHHHhhcCChhhhHHhhHHHHHHHhhhcC
Q 003396 347 EKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLEHEFLPLDLASKVQPLLAKISKYGG 426 (823)
Q Consensus 347 ~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~f~Pl~l~~k~~p~L~~l~~~~~ 426 (823)
.=|+.|+-=+.- +++|.-.-|-+..+.+ |+. .+++..+- +.|.-+..
T Consensus 243 -----r~Latlfkder~-----~~l~~y~ileKmyl~r-iI~--k~el~ef~--------------------~~L~pHQk 289 (399)
T KOG1497|consen 243 -----RMLATLFKDERC-----QKLPAYGILEKMYLER-IIR--KEELQEFE--------------------AFLQPHQK 289 (399)
T ss_pred -----HHHHHHhcCccc-----ccccchHHHHHHHHHH-Hhc--chhHHHHH--------------------HHhcchhh
Confidence 224555443332 2466665555555544 221 13333222 22221110
Q ss_pred CcccCCCCChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeE
Q 003396 427 KLASASSVPEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVV 506 (823)
Q Consensus 427 ~~~~~~~~~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i 506 (823)
.....=..-|..+++---+..+|+.|..|+++.|.++.. .+....|++.-+-+-.+-+.-.||...|.|
T Consensus 290 ----------a~~~dgssil~ra~~EhNlls~Skly~nisf~~Lg~ll~-i~~ekaekiaa~MI~qeRmng~IDQ~egii 358 (399)
T KOG1497|consen 290 ----------AHTMDGSSILDRAVIEHNLLSASKLYNNISFEELGALLK-IDAEKAEKIAAQMITQERMNGSIDQIEGII 358 (399)
T ss_pred ----------hcccCcchhhhhHHHHHhHHHHHHHHHhccHHHHHHHhC-CCHHHHHHHHHHHHhHHHhccchHhhcceE
Confidence 000011112345566666778999999999999999864 588999999999999999999999999999
Q ss_pred EEec
Q 003396 507 VFCN 510 (823)
Q Consensus 507 ~F~~ 510 (823)
+|.+
T Consensus 359 hFe~ 362 (399)
T KOG1497|consen 359 HFED 362 (399)
T ss_pred eecc
Confidence 9986
No 13
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=43 Score=38.85 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEE
Q 003396 440 SRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVF 508 (823)
Q Consensus 440 ~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F 508 (823)
-.-+..|+..++.--+.++|-+|+.|++..+.+-+-.-|..++|=++--|++.|.|...|||..|++.-
T Consensus 353 y~LivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRDGvIea~Id~~~g~m~s 421 (493)
T KOG2581|consen 353 YTLIVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQS 421 (493)
T ss_pred chHHHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHhccceeeeccccCceeh
Confidence 345667777888888999999999999999998777778889999999999999999999999997743
No 14
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=89.51 E-value=3.4 Score=50.44 Aligned_cols=61 Identities=28% Similarity=0.432 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 559 KEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQR 619 (823)
Q Consensus 559 ~eh~~~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~er 619 (823)
.+.+.+|+|++--++|++..++...++++||++++.++....+++-+++-+.|..++++.+
T Consensus 217 ~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~K 277 (1064)
T KOG1144|consen 217 RAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKK 277 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777766666666666666666666555555555555554444444433
No 15
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=87.94 E-value=1.3 Score=43.29 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=43.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHH
Q 003396 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVE 488 (823)
Q Consensus 436 ~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~ 488 (823)
.+.+..+++.+.+.|=.+++.-+|..|++|+++.+.+++-+. ..++.+++.+
T Consensus 69 ~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~-~~el~~~~~~ 120 (143)
T PF10075_consen 69 SPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLS-EEELEKFIKS 120 (143)
T ss_dssp --HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS--HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCC-HHHHHHHHHH
Confidence 468999999999999999999999999999999999998777 8899998853
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.59 E-value=6.2 Score=50.46 Aligned_cols=9 Identities=33% Similarity=0.840 Sum_probs=5.9
Q ss_pred CChhHHHHH
Q 003396 123 KRPEDLMLS 131 (823)
Q Consensus 123 ~TPE~lLls 131 (823)
..|++||++
T Consensus 151 LKPeNILL~ 159 (1021)
T PTZ00266 151 LKPQNIFLS 159 (1021)
T ss_pred CcHHHeEee
Confidence 567777764
No 17
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=86.93 E-value=24 Score=43.47 Aligned_cols=24 Identities=4% Similarity=0.115 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHHHHHHHHhhhCC
Q 003396 515 SDGLRDHLTIFAQSLNKVRALIYP 538 (823)
Q Consensus 515 s~~ir~qL~~la~~L~~~~~~i~p 538 (823)
.+.+.+.....-++....+..+|+
T Consensus 891 q~~~~~~~d~~~~~~e~~~~~l~s 914 (1259)
T KOG0163|consen 891 QREMNSEYDVAVKNYEKLVKRLDS 914 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444556666665666666666665
No 18
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.42 E-value=3.4 Score=46.78 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCC
Q 003396 446 LEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGL 513 (823)
Q Consensus 446 L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~ 513 (823)
.-.+.-.|-++.+.+-|.|++++++.+++..-+..++|+.|++-+.+|.+-++|| |-|.|..++.
T Consensus 299 av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n~e 363 (422)
T KOG2582|consen 299 AVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDNPE 363 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEecCcc
Confidence 3445667888899999999999999999988899999999999999999999999 9999998764
No 19
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=85.86 E-value=34 Score=38.66 Aligned_cols=248 Identities=15% Similarity=0.191 Sum_probs=135.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHhHHHHHh-hhhcCCCCh----hHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCC
Q 003396 235 FEQLKVATDLQLWQEAFYSVEDIHGLM-CMVKKTPKP----SLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNK 309 (823)
Q Consensus 235 f~QL~~Av~LeLWqEAFrsvEDI~~Lm-~~skk~pkp----~~ma~YYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~ 309 (823)
+.-..+..+..=|. +|+|++.+ ++.+..| | .|.-.|-+|+|+-|- -.--..++.-+|+|+..+.+
T Consensus 49 i~~c~v~~k~~ekd-----le~vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n----~~~~~l~L~vLsnLfn~~d~ 118 (378)
T KOG2753|consen 49 IEACDVLAKIPEKD-----LECVLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPN----DKTASLRLQVLSNLFNGVDK 118 (378)
T ss_pred HHHhHHhhcCCcch-----HHHHHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCcc----CCCcccHHHHHHHHHhccCC
Confidence 33445556666665 99998874 4666666 6 567778888887552 22233677777777765544
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCCccch-------------------------hhh-hhhHhHHhhhhHhhCCCCC
Q 003396 310 NLSLKDLQLIASSVVLAALLVVPYDRSRSASH-------------------------LEL-ENEKDRNLRMANLIGFELD 363 (823)
Q Consensus 310 ~~s~ee~~~~AS~vlLAaLsIP~~~~~~~~~~-------------------------~~~-d~~~~k~~Rla~LLgl~~~ 363 (823)
+ ++.-.+=+.+.|=||+=|--...-.++... +.+ +...+-.+=|+.|||--+.
T Consensus 119 ~-~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~ 197 (378)
T KOG2753|consen 119 P-TPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTE 197 (378)
T ss_pred C-chHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcc
Confidence 3 446677788888888755322110000000 000 1112233447888885432
Q ss_pred CCCcccccccHHHHHHHHHHcCCcccc----cHHHHHH-----HHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCC
Q 003396 364 PKFDSREALSRSSLLSELVSKGVMSCA----TQEVKDL-----YNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSV 434 (823)
Q Consensus 364 ~~~~~~~~PtR~~Ll~~l~~~~vl~~a----~~ev~~L-----Y~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~ 434 (823)
--..-..--.+...+..+..-+++.+= -|.|+.| |.+|+ .=+..++.....+..+
T Consensus 198 dnas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~i~qLL~-----IF~s~~L~aYveF~~~----------- 261 (378)
T KOG2753|consen 198 DNASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDLIHQLLK-----IFVSGKLDAYVEFVAA----------- 261 (378)
T ss_pred cchhHHHHHHHHHHHHHHcCCceeccchhccCchHHHhccchHHHHHH-----HHHhcchHHHHHHHHh-----------
Confidence 100000011223334444444444332 2555544 33333 1134455555555554
Q ss_pred ChhhhhhhHHHHHH--HHHHHHHH--HHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003396 435 PEVQLSRYIPALEK--LVTLRVLQ--QVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 435 ~~~~~~~Yv~~L~~--vi~~Rll~--qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
++.|-+-....++ +.=+|||. +|+.--.+|+++.+.+-+. ....++|.++++|++-+.|..+||..+++|+-.+
T Consensus 262 -N~~Fvqs~gl~~E~~~~KMRLLTlm~LA~es~eisy~~l~k~Lq-I~edeVE~fVIdaI~aklV~~kidq~~~~viVs~ 339 (378)
T KOG2753|consen 262 -NSGFVQSQGLVHEQNMAKMRLLTLMSLAEESNEISYDTLAKELQ-INEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSS 339 (378)
T ss_pred -ChHHHHHhcccHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeeh
Confidence 2333333223333 33345554 4444445677777765433 3677899999999999999999999999998765
Q ss_pred C
Q 003396 511 L 511 (823)
Q Consensus 511 ~ 511 (823)
.
T Consensus 340 ~ 340 (378)
T KOG2753|consen 340 S 340 (378)
T ss_pred h
Confidence 4
No 20
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.07 E-value=16 Score=40.33 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=68.4
Q ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCC
Q 003396 435 PEVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGL 513 (823)
Q Consensus 435 ~~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~ 513 (823)
.||-...|+..|-+.|-+.+|..|-+-|..|.|.++.+-+. .+..++|.+||.|+-.+.|.-|||..++.+..+...-
T Consensus 335 ~DpFIReh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Ln-v~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~ 412 (440)
T KOG1464|consen 335 DDPFIREHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELN-VPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKN 412 (440)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcC-CCHHHHHHHHHHHHhccccccchHHhhhHhccCccCC
Confidence 36788899999999999999999999999999988876432 4789999999999999999999999999999886543
No 21
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=1.5e+02 Score=37.11 Aligned_cols=18 Identities=6% Similarity=0.104 Sum_probs=9.3
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 003396 750 NKNTFQERVLNRRRVEVD 767 (823)
Q Consensus 750 d~~~f~~~i~~~r~~ef~ 767 (823)
+.+.|.+.+..-|..-+.
T Consensus 564 eidi~n~qlkelk~~~~~ 581 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNS 581 (1118)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 455565555555544443
No 22
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=80.29 E-value=1.6e+02 Score=36.52 Aligned_cols=254 Identities=16% Similarity=0.196 Sum_probs=149.4
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHhhCchhHHHHHHH-HHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 003396 163 EILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCE-IIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVA 241 (823)
Q Consensus 163 diLRnN~kLE~lY~~ta~~Af~FClkY~RktEFrRLce-~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~A 241 (823)
+.+|.-+=|=.|||...+.-|. +--| +|.+||+.-. +=.||.|+-+|=-|=.+.==+|
T Consensus 482 ~r~rtRAmLchIYh~AL~d~f~------------~ARDlLLMSHlQdnI---------~h~D~stQIL~NRtmvQLGLCA 540 (843)
T KOG1076|consen 482 DRLRTRAMLCHIYHHALHDNFY------------TARDLLLMSHLQDNI---------QHADISTQILFNRTMVQLGLCA 540 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHh---------hccChhHHHHHHHHHHHHHHHH
Confidence 7777778888999988876553 3445 5889998744 4458899988888866666678
Q ss_pred HhhhcHHHHHHHHhHHHHH------hhh----h---cCCCC----------hhHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 003396 242 TDLQLWQEAFYSVEDIHGL------MCM----V---KKTPK----------PSLLVVYYAKLTEIFWISSSHLYHAYAWF 298 (823)
Q Consensus 242 v~LeLWqEAFrsvEDI~~L------m~~----s---kk~pk----------p~~ma~YYekLa~IFwvs~n~LfHA~A~~ 298 (823)
-..++-+||--.+-||+.= +.- + -++|- |--|-.=-+-|--||++|.--|
T Consensus 541 FR~Gmi~EaH~~L~dl~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlEcVyLtcaMLl------- 613 (843)
T KOG1076|consen 541 FRQGMIKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLTCAMLL------- 613 (843)
T ss_pred HHcccHHHHHHHHHHHHhcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHHHHHHHHHHHH-------
Confidence 8899999988888888642 110 0 01111 3334444444555555543211
Q ss_pred HHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHH
Q 003396 299 KLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLL 378 (823)
Q Consensus 299 k~f~l~k~~~~~~s~ee~~~~AS~vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll 378 (823)
|+-.||+. -+.-=.|.++. .+.++.+-.-=..|..||- -+|+-.+
T Consensus 614 ----------------EIP~MAA~--~~d~Rrr~iSk-----------~frr~Le~serqsf~gPPE------n~RehVv 658 (843)
T KOG1076|consen 614 ----------------EIPYMAAH--ESDARRRMISK-----------SFRRQLEHSERQSFTGPPE------NTREHVV 658 (843)
T ss_pred ----------------hhhHHhhh--hhhhhcccccH-----------HHHHHHHHHhhccccCCch------hHHHHHH
Confidence 01111211 00001111111 1222333322233444431 4888888
Q ss_pred HHHH--HcCCcccccHHHHHHHHHHhhcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHHHHHHHH
Q 003396 379 SELV--SKGVMSCATQEVKDLYNLLEHEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLVTLRVLQ 456 (823)
Q Consensus 379 ~~l~--~~~vl~~a~~ev~~LY~lLE~~f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L~~vi~~Rll~ 456 (823)
.... .+|=.+.+..-|.. ..+|-.+|+.- +.=+..-+..++..-++-.|.
T Consensus 659 aAsKAm~~Gnw~~c~~fi~n--------------n~KvW~Lfpn~--------------d~V~~Ml~~rIqEEsLRTYLf 710 (843)
T KOG1076|consen 659 AASKAMQKGNWQKCFEFIVN--------------NIKVWDLFPNA--------------DTVLDMLTERIQEESLRTYLF 710 (843)
T ss_pred HHHHHHhcCCHHHHHHHHHh--------------hhhHHHhcccH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 6544 45544333332222 12233333311 234455566778888888889
Q ss_pred HHHhHhceeehhhhhhccCCC--C-hHHHHHHHHHHHhcCceeEEEeccCCeEEEecC
Q 003396 457 QVSEVYQMMRIESLSQMIPFF--D-FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL 511 (823)
Q Consensus 457 qlSqvY~ti~i~~l~~l~~f~--~-~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~ 511 (823)
--|.||+||++..|..+...+ . ..-|-++| -+..|...+|.-++||.|...
T Consensus 711 tYss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmi----ineEl~AslDqpt~~iv~hrv 764 (843)
T KOG1076|consen 711 TYSSVYDSVSLAKLADMFDLPEPKVHSIISKMI----INEELHASLDQPTQCIVMHRV 764 (843)
T ss_pred HhhhhhhhccHHHHHHHhCCCchhHHHHHHHHH----HHHHhhhccCCCcceEEEeec
Confidence 999999999999999996544 2 34455555 467899999999999999863
No 23
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=78.29 E-value=1.3e+02 Score=34.34 Aligned_cols=234 Identities=14% Similarity=0.117 Sum_probs=138.7
Q ss_pred hhhcHHHHHHHHhHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHH
Q 003396 243 DLQLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASS 322 (823)
Q Consensus 243 ~LeLWqEAFrsvEDI~~Lm~~skk~pkp~~ma~YYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~s~ee~~~~AS~ 322 (823)
..+=-+++=+.++|.-..+.-.-.-| |.+=++||.-=++-|-.-|||.=--....+|.... .-.++|..+.+..|-.
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~--d~~~l~~se~~~lA~~ 203 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCS--DIDDLSESEKQDLAFD 203 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccc--cccccCHHHHHHHHHH
Confidence 44556777788888888766433333 45777888777777766666532111223333333 2467889999999999
Q ss_pred HHHHhhccCCCCCCCccchhhhhhhHhHHhhhhHhhCCCCCCCCcccccccHHHHHHHHHHcCCcccccHHHHHHHHHHh
Q 003396 323 VVLAALLVVPYDRSRSASHLELENEKDRNLRMANLIGFELDPKFDSREALSRSSLLSELVSKGVMSCATQEVKDLYNLLE 402 (823)
Q Consensus 323 vlLAaLsIP~~~~~~~~~~~~~d~~~~k~~Rla~LLgl~~~~~~~~~~~PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE 402 (823)
..+|||=-- .-.+++.+-. +-=|-+|.| + .++-|..-++..|.-. + ..|+-|.
T Consensus 204 L~~aALLGe---~iyNfGELL~------HPilesL~g-T-----------~~eWL~dll~Afn~Gd-----l-~~f~~l~ 256 (380)
T KOG2908|consen 204 LSLAALLGE---NIYNFGELLA------HPILESLKG-T-----------NREWLKDLLIAFNSGD-----L-KRFESLK 256 (380)
T ss_pred HHHHHHhcc---ccccHHHHHh------hHHHHHhcC-C-----------cHHHHHHHHHHhccCC-----H-HHHHHHH
Confidence 999987322 1122221100 001223333 1 1333333333322221 1 1122222
Q ss_pred hcCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHH----HHHHHHHHHhHhceeehhhhhhccCCCC
Q 003396 403 HEFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLV----TLRVLQQVSEVYQMMRIESLSQMIPFFD 478 (823)
Q Consensus 403 ~~f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L~~vi----~~Rll~qlSqvY~ti~i~~l~~l~~f~~ 478 (823)
+. ..+ -|++.+|.+.|.+=| +.-+..+-+-+-.+|+++.....+. .|
T Consensus 257 ~~----------------~~~------------~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tk-ip 307 (380)
T KOG2908|consen 257 GV----------------WGK------------QPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATK-IP 307 (380)
T ss_pred HH----------------hcc------------CchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhC-CC
Confidence 11 111 267777777666543 3333344444777888888887753 57
Q ss_pred hHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCCchhhhHHHHHHHHHHHHHHhhh
Q 003396 479 FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLESDGLRDHLTIFAQSLNKVRALI 536 (823)
Q Consensus 479 ~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~s~~ir~qL~~la~~L~~~~~~i 536 (823)
..++|-++|-|..-|.|.=.||-..|+|+|+.-. |--.=++|+..|+.+|..=..-|
T Consensus 308 ~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvq-PRvl~~~qI~~Mk~rl~~W~~~v 364 (380)
T KOG2908|consen 308 NKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQ-PRVLDRSQIVKMKDRLDEWNKDV 364 (380)
T ss_pred HHHHHHHHHHHHhccceeeeecccccEEEEeccc-ccccCHHHHHhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999632 22223688889988887665544
No 24
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=75.00 E-value=12 Score=46.02 Aligned_cols=62 Identities=27% Similarity=0.359 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 564 LLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQRILREIEERE 628 (823)
Q Consensus 564 ~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~er~~~E~e~~~ 628 (823)
+.+=+..+++++|.-|+...+ ++++.|.+.+..++.+|.+++++|++++..++.+...++.+
T Consensus 216 v~~~qe~La~~qe~eE~qkre---eEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~K 277 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKRE---EEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKK 277 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455566666665554432 33333444444445555566677776666666555555544
No 25
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=72.86 E-value=43 Score=40.05 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 003396 553 LGEIVDKEHKRLLARKSIIEKRK 575 (823)
Q Consensus 553 ~~~~~~~eh~~~l~Rk~~ie~rK 575 (823)
.....+.++.+++.+-++-|.|+
T Consensus 597 dRks~srekr~~~sfdk~kE~Rr 619 (940)
T KOG4661|consen 597 DRKSRSREKRRERSFDKRKEERR 619 (940)
T ss_pred hhHHHHHHhhhhhhHHhhhhHHH
Confidence 45666777777887777777554
No 26
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=69.88 E-value=65 Score=38.51 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=14.3
Q ss_pred ccCCCCChhhhhhhHHHHHHHHHHHHH
Q 003396 429 ASASSVPEVQLSRYIPALEKLVTLRVL 455 (823)
Q Consensus 429 ~~~~~~~~~~~~~Yv~~L~~vi~~Rll 455 (823)
++.-+.+.++-++-++....++.-.|-
T Consensus 80 ~sq~~l~e~~~s~~~~a~t~m~~~qL~ 106 (591)
T KOG2412|consen 80 ESQDELEEEDHSQKCTAGTRMACAQLY 106 (591)
T ss_pred cccCcccCcchhHhhhccchhHHHHHH
Confidence 344444555555555555555555443
No 27
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.55 E-value=1e+02 Score=33.52 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC---ccccCCCHHHHHHHHHHHHHHHH
Q 003396 602 EAEQKRLAAEFEHRKNQRILREIEERELEEAQALLEEAEKRNKKKGGKKPI---LEGEKVTKQTLMERALTEQLRER 675 (823)
Q Consensus 602 eaE~~Rl~~E~~~Re~er~~~E~e~~~~~e~~~~l~~~~k~~~~~~~~~~~---~~~~~ld~~~l~~~~~~~~~Kek 675 (823)
...+.|+++|+.+.+.++.+...++...++....+ +. |....++. +++..=+-+.|+...|+-+.+.|
T Consensus 143 KkdEeR~~eEae~k~ee~~RkakEE~arkeheEyl---km---KaaFsVeeEGtee~~~eeqdnll~eFv~YIk~nK 213 (299)
T KOG3054|consen 143 KKDEERLAEEAELKEEEKERKAKEEEARKEHEEYL---KM---KAAFSVEEEGTEEVQGEEQDNLLSEFVEYIKKNK 213 (299)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HH---HhheeeccccccccccchHHHHHHHHHHHHHhcC
Confidence 33445555555555555555555554444443333 21 11111221 12222244456666666665544
No 28
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=63.46 E-value=15 Score=34.03 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccC
Q 003396 271 SLLVVYYAKLTEIFWISSS-HLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVV 331 (823)
Q Consensus 271 ~~ma~YYekLa~IFwvs~n-~LfHA~A~~k~f~l~k~~~~~~s~ee~~~~AS~vlLAaLsIP 331 (823)
.++-.|-.-|+.||-+||- .-+.-++|.-.|.-..++...=+.||.+.+.|...||.-+|-
T Consensus 30 D~~pdYmn~lgmIfsmcGlM~r~KwCsWlAl~cs~iSfAn~R~seD~KQi~ssfMlsisavV 91 (105)
T KOG3462|consen 30 DPPPDYMNFLGMIFSMCGLMFRLKWCSWLALYCSCISFANSRNSEDAKQISSSFMLSISAVV 91 (105)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999995 457788998888777777766677899999999999887763
No 29
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=62.72 E-value=2.8e+02 Score=31.70 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=51.3
Q ss_pred HHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 003396 454 VLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (823)
Q Consensus 454 ll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~ 514 (823)
+|.-.-++.+.|+|+-|..=+ -+++.++|+-||+.++...|...||-..|.|..|+.+.+
T Consensus 339 ifEtfCRIHqcIti~mLA~kL-nm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~s 398 (432)
T KOG2758|consen 339 IFETFCRIHQCITIDMLADKL-NMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTVS 398 (432)
T ss_pred HHHHHHHHHHheeHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCCC
Confidence 456667788899999888432 268999999999999999999999999999999987665
No 30
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=62.61 E-value=2e+02 Score=35.42 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHH----HHHHHHHHHHHhhhhcC
Q 003396 791 KRKKIFYVRTEEEKI----KRLREEEEARKREGIHI 822 (823)
Q Consensus 791 ~Rr~~~~r~~eEer~----~~~~eeee~~~~~e~~~ 822 (823)
+|+.+..++..|+|. .+..++|++.+|+++.|
T Consensus 340 Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~aei 375 (811)
T KOG4364|consen 340 ERKEEKSRKSDEERKKLESKEVEAQELRKKRHEAEI 375 (811)
T ss_pred HHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444455555441 24445566666666654
No 31
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=62.01 E-value=45 Score=39.34 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 564 LLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKR 607 (823)
Q Consensus 564 ~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~R 607 (823)
...|...++++....|+...++.+.|++..+.+...++.+|+.|
T Consensus 390 a~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer 433 (708)
T KOG3654|consen 390 AQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEER 433 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 34455555655555556666666666665555555555444444
No 32
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=59.01 E-value=84 Score=35.21 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHhceeehhhhhhccC
Q 003396 451 TLRVLQQVSEVYQMMRIESLSQMIP 475 (823)
Q Consensus 451 ~~Rll~qlSqvY~ti~i~~l~~l~~ 475 (823)
+..+|.+......+|.|++...--|
T Consensus 181 ~~~~l~~~~~~l~~i~~TDq~~~~p 205 (321)
T PF07946_consen 181 LIKALNKAGDYLEYIHFTDQPSGKP 205 (321)
T ss_pred HHHHHHhhhhheeEEEEECCCCCCC
Confidence 5666667777777777776665444
No 33
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=57.93 E-value=1.6e+02 Score=35.52 Aligned_cols=17 Identities=12% Similarity=0.137 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHhceee
Q 003396 450 VTLRVLQQVSEVYQMMR 466 (823)
Q Consensus 450 i~~Rll~qlSqvY~ti~ 466 (823)
+-.|.+.+-|+.|.-|.
T Consensus 133 ~~q~~~~~~~~~~~ki~ 149 (591)
T KOG2412|consen 133 INQRQTEIKSDIRAKIL 149 (591)
T ss_pred chhhhHhHHhhhhhhhh
Confidence 56677777777766554
No 34
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=52.01 E-value=2.8e+02 Score=28.45 Aligned_cols=69 Identities=4% Similarity=-0.082 Sum_probs=36.7
Q ss_pred ceeEEEeccCC-eEEEecCCCCchhhhHHHHHHHHHHHHHHhhhCCchhh-hhhHHHHHHHHHHHHHHHHHH
Q 003396 494 FIAMKIDHMRG-VVVFCNLGLESDGLRDHLTIFAQSLNKVRALIYPPANK-ASKLGEMLAGLGEIVDKEHKR 563 (823)
Q Consensus 494 ~l~vrIDH~~~-~i~F~~~~~~s~~ir~qL~~la~~L~~~~~~i~p~~~~-~~~~~~~~~~~~~~~~~eh~~ 563 (823)
.-+.-+||.+| ..-|+.+.|++..+- +|-.|.-.+--...++-|+... -..|...+..-.+.++.-+..
T Consensus 10 ~~~~~~~~~~~gmp~ld~~t~~~q~~~-~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~e 80 (181)
T PRK13454 10 AAAAGHAASAPGMPQLDFSTFPNQIFW-LLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQK 80 (181)
T ss_pred ccccccccCCCCCCCCcHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34566788654 456666667766544 4555554444444555666544 344555555444444444333
No 35
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.58 E-value=91 Score=34.96 Aligned_cols=125 Identities=12% Similarity=0.225 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHcCCcc-cccHHHHHHHHHHhh--cCChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHH
Q 003396 373 SRSSLLSELVSKGVMS-CATQEVKDLYNLLEH--EFLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKL 449 (823)
Q Consensus 373 tR~~Ll~~l~~~~vl~-~a~~ev~~LY~lLE~--~f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L~~v 449 (823)
.|+..-.-|..++-+. +.+..|+.+-.+-|. +=+-.+...-++..=+.|.+ |+-.......|-+|
T Consensus 261 ~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~------------D~~iRsHl~~LYD~ 328 (421)
T COG5159 261 RREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQ------------DSFIRSHLQYLYDV 328 (421)
T ss_pred hHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhcc------------CHHHHHHHHHHHHH
Confidence 3555555555666665 777888887777772 22344444444444444544 56667777888899
Q ss_pred HHHHHHHHHHhHhceeehhhhhhccCCCChHHHH----HHHHHHHhcCceeEEEeccCCeEEEecCCCC
Q 003396 450 VTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVE----KISVEAVKHNFIAMKIDHMRGVVVFCNLGLE 514 (823)
Q Consensus 450 i~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iE----k~lv~a~~~~~l~vrIDH~~~~i~F~~~~~~ 514 (823)
++-+-+..+-.-|+.|+|+++..++.| +..+|| ++|++-+-.| .+||.+||+.--..|-.
T Consensus 329 LLe~Nl~kiiEPfs~VeishIa~viGl-dt~qvEgKLsqMILDKifyG----~LDqg~gcLivy~ep~q 392 (421)
T COG5159 329 LLEKNLVKIIEPFSVVEISHIADVIGL-DTNQVEGKLSQMILDKIFYG----TLDQGDGCLIVYGEPAQ 392 (421)
T ss_pred HHHhhhhhhcCcceeeehhHHHHHhcc-cHHHHHHHHHHHHHHHHHHh----hhccCCceEEEeCCccc
Confidence 999989899999999999999998764 555666 5666666565 57999999998766543
No 36
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.92 E-value=91 Score=33.90 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003396 802 EEKIKRLREEEEARKREG 819 (823)
Q Consensus 802 Eer~~~~~eeee~~~~~e 819 (823)
+++++..+||++++.++|
T Consensus 158 ee~~RkakEE~arkeheE 175 (299)
T KOG3054|consen 158 EEKERKAKEEEARKEHEE 175 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333335555555555544
No 37
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.06 E-value=3.4e+02 Score=31.11 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=50.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEec
Q 003396 437 VQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCN 510 (823)
Q Consensus 437 ~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~ 510 (823)
|-|.-|+...+ +|+--|+=.-|.|++++...+-. ..|..-|++-|-.-+-.|.++++||-.+|+|-=+.
T Consensus 294 ~h~~yyvREMR----~rvY~QlLESYrsl~l~~MA~aF-gVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNr 362 (393)
T KOG0687|consen 294 PHYRYYVREMR----RRVYAQLLESYRSLTLESMAKAF-GVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNR 362 (393)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHhHHHHhhccCceeeeeecccceeecCC
Confidence 44555665555 45566777889999999887631 13666666666666679999999999999997664
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=47.01 E-value=1.2e+02 Score=38.81 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhcccccchhhhhHHHHH
Q 003396 49 IMFKYVELCVDMRRGKFAKDGLIQYRI 75 (823)
Q Consensus 49 Im~~~ieLCVel~kg~~aKdgL~QYk~ 75 (823)
|.+++-.-|+...||.+ +.+|.=|+.
T Consensus 164 il~LlGkA~i~ynkkdY-~~al~yyk~ 189 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDY-RGALKYYKK 189 (1018)
T ss_pred hHHHHHHHHHHhccccH-HHHHHHHHH
Confidence 44445555555555555 445554544
No 39
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.03 E-value=5.8e+02 Score=32.35 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003396 550 LAGLGEIVDKEHKRLLARKSIIEKRKEEHERQL 582 (823)
Q Consensus 550 ~~~~~~~~~~eh~~~l~Rk~~ie~rKE~~e~~~ 582 (823)
+....+.++.++..+..++..+++.+.+.++..
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~ 550 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLK 550 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444433
No 40
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=45.51 E-value=92 Score=34.89 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003396 755 QERVLNRRRVEVDRRKVEREE 775 (823)
Q Consensus 755 ~~~i~~~r~~ef~~~~~e~~~ 775 (823)
+..+...|..+-++..++..+
T Consensus 257 ~~K~~k~R~~~~~~~~K~~~~ 277 (321)
T PF07946_consen 257 KKKAKKNREEEEEKILKEAHQ 277 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444333
No 41
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=44.88 E-value=4.7e+02 Score=30.47 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=3.3
Q ss_pred hhCCch
Q 003396 535 LIYPPA 540 (823)
Q Consensus 535 ~i~p~~ 540 (823)
||||..
T Consensus 54 mvD~~~ 59 (387)
T PRK09510 54 MVDPGA 59 (387)
T ss_pred ecChHH
Confidence 566653
No 42
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=39.25 E-value=2.5e+02 Score=32.33 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHhhcCChhhhHH---hhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHHHHHH
Q 003396 374 RSSLLSELVSKGVMSCATQEVKDLYNLLEHEFLPLDLAS---KVQPLLAKISKYGGKLASASSVPEVQLSRYIPALEKLV 450 (823)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~f~Pl~l~~---k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L~~vi 450 (823)
++.+-.-+-.+..+.+++|+|..+=.+-| -|+--+|.. -+...=..|.. ||-.......|.++.
T Consensus 265 ~ddv~~lls~K~~l~y~g~~i~AmkavAe-A~~nRSLkdF~~AL~~yk~eL~~------------D~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 265 PDDVAALLSAKLALKYAGRDIDAMKAVAE-AFGNRSLKDFEKALADYKKELAE------------DPIVRSHLQSLYDNL 331 (411)
T ss_pred HHHHHHHHhhHHHHhccCcchHHHHHHHH-HhcCCcHHHHHHHHHHhHHHHhc------------ChHHHHHHHHHHHHH
Confidence 44444555567777888888888877777 444333332 22222233332 566677777888888
Q ss_pred HHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHHHHHhcCceeEEEeccCCeEEEecCC
Q 003396 451 TLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNLG 512 (823)
Q Consensus 451 ~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~~ 512 (823)
+-+=|-.+=.=|+.|.|+++..++. ++...||+=|-+-+=..-+.=.+||..||+.--..+
T Consensus 332 LEknl~riIEPyS~Vei~hIA~~IG-l~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~ 392 (411)
T KOG1463|consen 332 LEKNLCRIIEPYSRVEISHIAEVIG-LDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEP 392 (411)
T ss_pred HHHhHHHHcCchhhhhHHHHHHHHC-CCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCC
Confidence 8888878888899999999999976 466677776666666666667789999997654444
No 43
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=37.28 E-value=5.3e+02 Score=27.32 Aligned_cols=58 Identities=7% Similarity=0.018 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 716 KVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVER 773 (823)
Q Consensus 716 ~~~~e~~~~~~~~~ak~~he~~l~~k~rL~r~~~d~~~f~~~i~~~r~~ef~~~~~e~ 773 (823)
++.|-++...--....+.++.+-+.+.|+.|+..+.+.+..=-+.-|..-|+......
T Consensus 141 m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emLqqk 198 (225)
T KOG4848|consen 141 MKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEMLQQK 198 (225)
T ss_pred HHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHHHHH
Confidence 3334444444444444555566677788888888888888877888888888765543
No 44
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=36.30 E-value=2.5e+02 Score=34.06 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhhH
Q 003396 675 RQEMEKKLQKLAKTMDY 691 (823)
Q Consensus 675 k~E~~~kl~~~~Kr~Dh 691 (823)
++-+..+...-++|+||
T Consensus 736 r~a~~drY~sdf~R~D~ 752 (940)
T KOG4661|consen 736 RKAVLDRYSSDFKRLDY 752 (940)
T ss_pred hhhHhhhhhcccccccc
Confidence 45667788888888887
No 45
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.82 E-value=6.6e+02 Score=28.01 Aligned_cols=25 Identities=12% Similarity=0.107 Sum_probs=15.2
Q ss_pred ccccHHHHHHHHHHcCCcccccHHH
Q 003396 370 EALSRSSLLSELVSKGVMSCATQEV 394 (823)
Q Consensus 370 ~~PtR~~Ll~~l~~~~vl~~a~~ev 394 (823)
..||-..|.+.+-.-|-+.-|+-+|
T Consensus 171 dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 171 DLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred cCChHHHHHHHHHHhccceecCCcc
Confidence 3577777766666666655555444
No 46
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=35.56 E-value=1.6e+02 Score=34.18 Aligned_cols=121 Identities=25% Similarity=0.317 Sum_probs=78.2
Q ss_pred hHHHHHhhcCcccc--Ccc-cccccchHHHHHHHHHHHHHHhh---------ccch-hhHHHHHHHHHHHHHHHHhhCch
Q 003396 126 EDLMLSYVSGEKGK--DRS-DRELVTPWFKFLWETYRTVLEIL---------RNNS-KLEALYAMTAHRAFQFCKQYKRT 192 (823)
Q Consensus 126 E~lLlsavs~e~~~--drt-dr~~vtPwlkFLWEsYR~vLdiL---------RnN~-kLE~lY~~ta~~Af~FClkY~Rk 192 (823)
-++++++++..... +|. .+.-+---+.-+|.+|..-.--| ..+. -++..-+.|-..++-||-
T Consensus 264 anl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~f~~~f~~~w~~~~~~~~~~~~~~~~~~l~~i~~d~~gfag----- 338 (401)
T PRK09550 264 ANLLLNYCSQPGLLGPREAAFREWLLETIEETWSTFAEKFLKLWRKESVDAALAEEGYLEAYLQNILRDAVGFAG----- 338 (401)
T ss_pred HHHHHHHhcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHhhh-----
Confidence 36789998876531 111 23334444578899998776333 2222 246666778888899985
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhhh
Q 003396 193 TEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMV 264 (823)
Q Consensus 193 tEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~s 264 (823)
||++|.=+.- .|..||+.-+....=...--..|.++..|=+=.+.|+|++|+-.++..+
T Consensus 339 ------~e~~RR~vG~-------a~v~d~~~i~d~~~r~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~~ 397 (401)
T PRK09550 339 ------CELIRRTIGL-------AHVADLDTIEDPELRAEAERHALKLGRELILNRDKIASIEDLIALFRQI 397 (401)
T ss_pred ------HHHhhhhccc-------ccccccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 8888874433 3344553333333444455567889999889999999999998876643
No 47
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=35.15 E-value=72 Score=36.96 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhHh---ceeehhhhhhccCCCC-----hHHHHHHHHHHHhcCceeEEEeccCCeEEEecC-CCC
Q 003396 446 LEKLVTLRVLQQVSEVY---QMMRIESLSQMIPFFD-----FAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL-GLE 514 (823)
Q Consensus 446 L~~vi~~Rll~qlSqvY---~ti~i~~l~~l~~f~~-----~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~-~~~ 514 (823)
+.-|+.+++|+.+.+.. ..++++.+..-.+|.+ ..++|=+|++++..|.|.-=|+|...++.|... +|+
T Consensus 312 l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pfp 389 (394)
T KOG2688|consen 312 LPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPFP 389 (394)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCCC
Confidence 77899999999999999 8999999987777664 999999999999999999999999999999875 555
No 48
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=33.92 E-value=2.1e+02 Score=32.45 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=22.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 748 LDNKNTFQERVLNRRRVEVDRRKVEREERISLIIK 782 (823)
Q Consensus 748 ~~d~~~f~~~i~~~r~~ef~~~~~e~~~rl~~~~~ 782 (823)
..||..|......+-..++..++.-+..|...+..
T Consensus 85 l~ey~~~~~~~rer~E~eL~eLkekq~~r~~eR~~ 119 (361)
T KOG3634|consen 85 LGEYEDFDRIEREREEKELKELKEKQEKRKLEREE 119 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677777777666667777766666666654433
No 49
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.63 E-value=1.1e+02 Score=27.92 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=34.8
Q ss_pred hhhHHHhHHHHHhcCChHHHHHHHHHHHhcccccchh-chHHHHHHHHHHHH
Q 003396 7 PEAALNQAEALINVGQKQDALQVLHDLITSKRHRAWQ-KILEKIMFKYVELC 57 (823)
Q Consensus 7 PEnALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~-~~lE~Im~~~ieLC 57 (823)
++.-+.-|.-++..|+.++|++.|-+++.. .++|. ..--.-|+.+.++|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~--dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRR--DRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---TTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccccccHHHHHHHHHHHHc
Confidence 456678899999999999999999999976 57885 33344444444443
No 50
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=33.58 E-value=1.7e+02 Score=34.91 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 573 KRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRL 608 (823)
Q Consensus 573 ~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl 608 (823)
.||..+|.. .+..++|+++.++..+..+++|..|.
T Consensus 409 ~rkqqleae-~e~kreearrkaeeer~~keee~arr 443 (708)
T KOG3654|consen 409 RRKQQLEAE-KEQKREEARRKAEEERAPKEEEVARR 443 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhHhhhcchhhhhhHH
Confidence 455544433 33346777777777777666666654
No 51
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=32.70 E-value=5.1e+02 Score=29.47 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003396 590 ESRRLKQQKITEEAEQKR 607 (823)
Q Consensus 590 ~~~r~~~~~~~~eaE~~R 607 (823)
++.++...+..++.|+.+
T Consensus 101 ErlkQle~er~~a~e~qk 118 (387)
T COG3064 101 ERLKQLEKERLKAQEQQK 118 (387)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333444443
No 52
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.94 E-value=73 Score=34.07 Aligned_cols=48 Identities=25% Similarity=0.530 Sum_probs=38.6
Q ss_pred HHHhHHHHHhcCChHHHHHHHHHHHhcccccchhchHHHHHHHHHHHH
Q 003396 10 ALNQAEALINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELC 57 (823)
Q Consensus 10 ALKRA~ELi~vGq~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLC 57 (823)
.+.-|+|+...|+++.|+..|..+..+=|.=+|...++.|.....+=.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 456799999999999999999999777555578888888877655433
No 53
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=31.72 E-value=4.1e+02 Score=27.12 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHHHhhc-------CChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHHHH
Q 003396 374 RSSLLSELVSKGVMSCATQEVKDLYNLLEHE-------FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIPAL 446 (823)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~-------f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~~L 446 (823)
-.+|++.+...|.+..+..++..+..+++.+ ++|.-=..+-..++..+-... -++.+..++.-|
T Consensus 13 A~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~~---------~~~~~~nfl~~L 83 (184)
T CHL00119 13 AEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGSQ---------INENTLKFLMVL 83 (184)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHhc---------cCHHHHHHHHHH
Confidence 3467777788888888888888888888753 244432233334444442200 012333333222
Q ss_pred HHHHHHHHHHHHHhHhceeehhhhhhc-----cCCC-ChHH---HHHHHHHHHh--cCceeEEEec--cCC-eEEEecCC
Q 003396 447 EKLVTLRVLQQVSEVYQMMRIESLSQM-----IPFF-DFAV---VEKISVEAVK--HNFIAMKIDH--MRG-VVVFCNLG 512 (823)
Q Consensus 447 ~~vi~~Rll~qlSqvY~ti~i~~l~~l-----~~f~-~~~~---iEk~lv~a~~--~~~l~vrIDH--~~~-~i~F~~~~ 512 (823)
-+-=-..+|.++...|..+--+.-... .+|+ +..+ |...|-.... ...+...||. ..| .|.+|+..
T Consensus 84 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~~~~v~l~~~vD~~ligGi~i~~g~~~ 163 (184)
T CHL00119 84 VDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTNAKEIKLVITVDPSLIGGFLIKIGSKV 163 (184)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhCCCeEEEEeeeChHHhCcEEEEECCEE
Confidence 222111344445554444432221111 1233 4444 4444433221 2334677787 344 56777766
Q ss_pred CCchhhhHHHHHHHHHHHHHH
Q 003396 513 LESDGLRDHLTIFAQSLNKVR 533 (823)
Q Consensus 513 ~~s~~ir~qL~~la~~L~~~~ 533 (823)
+++. ++++|..+-..|..++
T Consensus 164 ~D~S-i~~~L~~l~~~l~~~~ 183 (184)
T CHL00119 164 IDTS-IKGQLKQLASHLDTVL 183 (184)
T ss_pred EeHh-HHHHHHHHHHHHHHhc
Confidence 6654 7799999888887664
No 54
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=31.50 E-value=75 Score=30.11 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccC
Q 003396 272 LLVVYYAKLTEIFWISSSHL-YHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVV 331 (823)
Q Consensus 272 ~ma~YYekLa~IFwvs~n~L-fHA~A~~k~f~l~k~~~~~~s~ee~~~~AS~vlLAaLsIP 331 (823)
.-..|+.-|+.||-++|-.+ ++-+||.=+|.-.-++...=+++|.+.+.+.+.+|++++=
T Consensus 30 ~~~Dy~~~L~~~~~m~gl~mr~K~~aW~al~~s~~S~an~k~~~d~kq~~ss~m~sv~alv 90 (103)
T PF03669_consen 30 PPPDYMSFLGMIFSMAGLMMRNKWCAWAALFFSCQSFANMKSSNDTKQISSSFMFSVMALV 90 (103)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 46789999999999998554 7888897777666543322226777888888998888763
No 55
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=31.21 E-value=1.6e+02 Score=27.87 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 714 EEKVLHEREQQLEVELSRQRHDGDLREKYRLSRMLDNKNTFQERVLNRRRVEVDRRKVEREERI 777 (823)
Q Consensus 714 ~d~~~~e~~~~~~~~~ak~~he~~l~~k~rL~r~~~d~~~f~~~i~~~r~~ef~~~~~e~~~rl 777 (823)
..+-+|+..++.+..+ .++|+..++.|+-+..+=+|=-.|.+.|...+.++=.....+-...|
T Consensus 36 d~rsLye~LqenK~~K-q~efeE~~K~kn~~r~LDedE~eFLd~v~~~~~~~E~~~~~ee~eeL 98 (102)
T PF10187_consen 36 DGRSLYERLQENKAAK-QEEFEEKHKLKNQFRGLDEDEIEFLDEVEEKKRAEERQRKREEEEEL 98 (102)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHHHHhcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566799999888766 77899999999999889999999999998887665554444444433
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=30.38 E-value=5.1e+02 Score=33.53 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 003396 611 EFEHRKNQRILRE 623 (823)
Q Consensus 611 E~~~Re~er~~~E 623 (823)
|..+|+..+++++
T Consensus 863 e~~~r~~l~~qr~ 875 (1018)
T KOG2002|consen 863 EKARREKLEKQRE 875 (1018)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 57
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=29.83 E-value=6.2e+02 Score=25.87 Aligned_cols=50 Identities=8% Similarity=-0.006 Sum_probs=28.5
Q ss_pred CchhhhHHHHHHHHHHHHHHhhhCCchhh-hhhHHHHHHHHHHHHHHHHHH
Q 003396 514 ESDGLRDHLTIFAQSLNKVRALIYPPANK-ASKLGEMLAGLGEIVDKEHKR 563 (823)
Q Consensus 514 ~s~~ir~qL~~la~~L~~~~~~i~p~~~~-~~~~~~~~~~~~~~~~~eh~~ 563 (823)
....+-.|+-+|.-.|--...++.+|... -..|...+..-...++.-+..
T Consensus 23 n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~e 73 (184)
T CHL00019 23 NTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREE 73 (184)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677888877777777777665433 344544554444444444333
No 58
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=29.60 E-value=1.1e+03 Score=28.51 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=89.6
Q ss_pred HHhHHHHHhcCC-hHHHHHHHHHHHhcccccchhchHHHHHHHHHHHHhhc-ccccchhhhhHHHHHhhhccCcCcH---
Q 003396 11 LNQAEALINVGQ-KQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDM-RRGKFAKDGLIQYRIVCQQVNVTSL--- 85 (823)
Q Consensus 11 LKRA~ELi~vGq-~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLCVel-~kg~~aKdgL~QYk~~~Q~~nv~SL--- 85 (823)
.+-|+.|=..|+ .+.||..|+.++.- -..+..-+.++++||.----. -+++. -.-|.---+..-.+|+.|+
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~f---t~yD~ec~n~v~~fvKq~Y~qaLs~~~-~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQF---TNYDIECENIVFLFVKQAYKQALSMHA-IPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCCCccccc
Confidence 467899999999 88899999998754 345578888998888653322 22222 2233444444445666655
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCccccccCCChhHH-HHHhhcCccccCcccccccchHHHHHHHHHH
Q 003396 86 EEVIKHFMHLST-----EKAEQARSQAQALEEALDVDDLEADKRPEDL-MLSYVSGEKGKDRSDRELVTPWFKFLWETYR 159 (823)
Q Consensus 86 e~Vi~~fl~lae-----~K~~~Aq~ka~~~~~~~~vdDLE~~~TPE~l-Llsavs~e~~~drtdr~~vtPwlkFLWEsYR 159 (823)
+.=|-.|+.-|| .-...+...+-=+.. | .++|+.. |+|-++-+ --.|-
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~---i-----aPS~~~~RLlGl~l~e------------------~k~Y~ 512 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---I-----APSPQAYRLLGLCLME------------------NKRYQ 512 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---h-----CCcHHHHHHHHHHHHH------------------HhhHH
Confidence 222555554443 111111111111110 1 2466654 23332221 23466
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHHhhCch
Q 003396 160 TVLEILRNNSKLEALYAMTAHRAFQFCKQYKRT 192 (823)
Q Consensus 160 ~vLdiLRnN~kLE~lY~~ta~~Af~FClkY~Rk 192 (823)
-.++.|..=|.=+.+|..-+++|+-+|.||--|
T Consensus 513 eA~~~l~~LP~n~~~~dskvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 513 EAWEYLQKLPPNERMRDSKVQKALALCQKHLPK 545 (549)
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhhhh
Confidence 666777777778899999999999999999543
No 59
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=29.56 E-value=54 Score=25.71 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCcccccHHHHHHHHH
Q 003396 374 RSSLLSELVSKGVMSCATQEVKDLYNL 400 (823)
Q Consensus 374 R~~Ll~~l~~~~vl~~a~~ev~~LY~l 400 (823)
+..||..|+..||++..+ ++||++
T Consensus 3 K~~lI~~Li~~Giyk~~d---rqL~El 26 (38)
T PF13076_consen 3 KDFLIEKLIQSGIYKKED---RQLYEL 26 (38)
T ss_pred HHHHHHHHHHcCCcCccc---hHHHHc
Confidence 678999999999999877 888876
No 60
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=29.32 E-value=97 Score=31.04 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhhhCCCCCHHHHH--HHHHHHHHHhhc
Q 003396 266 KTPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFKLFTLQKTYNKNLSLKDLQ--LIASSVVLAALL 329 (823)
Q Consensus 266 k~pkp~~ma~YYekLa~IFwvs~n~LfHA~A~~k~f~l~k~~~~~~s~ee~~--~~AS~vlLAaLs 329 (823)
.+|||..+.|| .+.|++.|--..=+-.+..+|...- ++|++|.. .+...|+++++-
T Consensus 10 ~~Pk~~~~~n~----l~AFlvGG~IC~iGQ~l~d~~~~~~----~lt~~~a~~~~~~~lV~lgaiL 67 (141)
T TIGR02838 10 YEPKPPYLKNC----VMAFLVGGLICLIGQLISDFYLRYF----QFSEKTAGSPTSATLIFISALL 67 (141)
T ss_pred cCCCCcHHHHH----HHHHHhCcHHHHHHHHHHHHHHHhc----cCChhhcccchhhHHHHHHHHH
Confidence 47999988877 4789999998888888888883221 23333322 256677777763
No 61
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=29.25 E-value=81 Score=24.29 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=27.5
Q ss_pred hhhHHHhHHHHHhcCChHHHHHHHHHHHhc
Q 003396 7 PEAALNQAEALINVGQKQDALQVLHDLITS 36 (823)
Q Consensus 7 PEnALKRA~ELi~vGq~~~AL~~L~d~i~s 36 (823)
|+.-+..|.-+...|+++.|.+.+..++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888999999999999999999999875
No 62
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.24 E-value=9.5e+02 Score=28.43 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=9.1
Q ss_pred cCCCChHHHHHHH
Q 003396 474 IPFFDFAVVEKIS 486 (823)
Q Consensus 474 ~~f~~~~~iEk~l 486 (823)
+.+++..++..|+
T Consensus 141 ig~l~~~~v~sfl 153 (429)
T PRK00247 141 IGFLTSEEVESFL 153 (429)
T ss_pred cccCCHHHHHHHH
Confidence 3466778887776
No 63
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.01 E-value=1.3e+03 Score=29.21 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHh
Q 003396 230 YLDTRFEQLKVATD 243 (823)
Q Consensus 230 ~LetRf~QL~~Av~ 243 (823)
.|..++.+|...+.
T Consensus 226 ~ln~~l~~l~~~~~ 239 (771)
T TIGR01069 226 KLNNKLAQLKNEEE 239 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777766655
No 64
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115 kDa epithelial MAP (E-MAP-115) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin []. The binding of this microtubule associated protein is nucleotide independent [].
Probab=28.00 E-value=7e+02 Score=25.91 Aligned_cols=33 Identities=36% Similarity=0.418 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhc
Q 003396 667 ALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAA 701 (823)
Q Consensus 667 ~~~~~~Kek~E~~~kl~~~~Kr~Dh~eRA~R~eE~ 701 (823)
.-+..++-+.|.+..+... --..+||=+|.+||
T Consensus 119 a~EeAek~r~ErE~~~~q~--eqERleRKKRiEEI 151 (171)
T PF05672_consen 119 AREEAEKQRKERERIMQQE--EQERLERKKRIEEI 151 (171)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4455666667777666555 34678888888887
No 65
>COG4857 Predicted kinase [General function prediction only]
Probab=27.84 E-value=4e+02 Score=30.28 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=65.8
Q ss_pred HHHHHhhcCcccc-Cccc----ccccchHH-----------HHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHHhh
Q 003396 127 DLMLSYVSGEKGK-DRSD----RELVTPWF-----------KFLWETYRTVLEILRN-NSKLEALYAMTAHRAFQFCKQY 189 (823)
Q Consensus 127 ~lLlsavs~e~~~-drtd----r~~vtPwl-----------kFLWEsYR~vLdiLRn-N~kLE~lY~~ta~~Af~FClkY 189 (823)
++-||++|..+-- |--. |+.|--+. .-||++|| -.+++.| ..-|-.+-+.|...++-|.-
T Consensus 270 Nl~~~~~s~~g~~~~~~krd~~r~~L~e~i~~iw~~F~e~fs~lW~k~~-~~~l~~n~e~~ld~~i~~I~~d~lgfAG-- 346 (408)
T COG4857 270 NLWMSLFSQKGFEEDSGKRDEMRAYLLECILDIWETFREEFSLLWRKER-QDKLFENAEQALDYVIENIWKDSLGFAG-- 346 (408)
T ss_pred HHHHHHHhhhchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHhhcch--
Confidence 7788888854432 1112 33332222 34666666 3455555 23344455566666666643
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhh
Q 003396 190 KRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCM 263 (823)
Q Consensus 190 ~RktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~ 263 (823)
||+.|.-+..+. .-||..-..-.+-+.--=.-|..++.|-.=..-|.|+-||..|-.+
T Consensus 347 ---------~E~iRRtlGlAh-------vadl~ti~~~dkr~~~e~~al~~g~~~i~kr~~~~si~dv~~l~~l 404 (408)
T COG4857 347 ---------IEMIRRTLGLAH-------VADLETIADSDKRAQCEKKALKKGRHMIVKRSEIHSITDVIELAKL 404 (408)
T ss_pred ---------HHHHHHHhhhhh-------hccccccCCHHHHhhhHHHHHHHhHHHHhhhhhcccHHHHHHHHHH
Confidence 788887665542 3344222212223333334567777777788889999999988654
No 66
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=27.32 E-value=77 Score=25.89 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=41.7
Q ss_pred HHhcCChHHHHHHHHHHHhcccccchhchHHHHHHHHHHHHhhcccccchhhhhHHHHHhhh
Q 003396 17 LINVGQKQDALQVLHDLITSKRHRAWQKILEKIMFKYVELCVDMRRGKFAKDGLIQYRIVCQ 78 (823)
Q Consensus 17 Li~vGq~~~AL~~L~d~i~skr~r~w~~~lE~Im~~~ieLCVel~kg~~aKdgL~QYk~~~Q 78 (823)
|+..|+++.|+..+..++..- |..-.+++.+..+|+...+-..|...|.++....+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 678899999999999987652 44667888899999998876666666665555443
No 67
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=26.66 E-value=6.4e+02 Score=25.97 Aligned_cols=148 Identities=21% Similarity=0.234 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHcCCcccccHHHHHHHHHHhhc-------CChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHH
Q 003396 372 LSRSSLLSELVSKGVMSCATQEVKDLYNLLEHE-------FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIP 444 (823)
Q Consensus 372 PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~-------f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~ 444 (823)
|-..+|+.-+..+|.+..+..++..+=.++.++ .+|.-=...-..+|..+-...+ ++.+..++.
T Consensus 10 ~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~~~---------~~~~~nfL~ 80 (178)
T COG0712 10 RYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKKIG---------DPLLQNFLR 80 (178)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhccC---------cHHHHHHHH
Confidence 667788888889999988888888888888866 2443222233333333322110 123333322
Q ss_pred HHHHHHHHHHHHHHHhHhceeehhhhhhcc-----CCC-ChHHHHHHHHHH----HhcCceeEEEec--cCCe-EEEecC
Q 003396 445 ALEKLVTLRVLQQVSEVYQMMRIESLSQMI-----PFF-DFAVVEKISVEA----VKHNFIAMKIDH--MRGV-VVFCNL 511 (823)
Q Consensus 445 ~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~-----~f~-~~~~iEk~lv~a----~~~~~l~vrIDH--~~~~-i~F~~~ 511 (823)
-|-+.-=.-++-++-..|..+.-.+-.... +++ |..+++++.--. .+.-.+.+.||. ..|. |.+|+.
T Consensus 81 ll~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~~~v~i~~~VD~sliGG~iI~vgd~ 160 (178)
T COG0712 81 LLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFGKKVKLNNKIDPSLIGGLIIKVGDE 160 (178)
T ss_pred HHHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhCCCceEEeeeCHHHhCceEEEECCE
Confidence 222211112233333333322222111110 222 666666554322 245567888887 3444 455555
Q ss_pred CCCchhhhHHHHHHHHHH
Q 003396 512 GLESDGLRDHLTIFAQSL 529 (823)
Q Consensus 512 ~~~s~~ir~qL~~la~~L 529 (823)
.++. .||++|.+|+..|
T Consensus 161 viD~-Svr~~L~~l~~~l 177 (178)
T COG0712 161 VIDG-SVRGKLKRLAKAL 177 (178)
T ss_pred EEec-hHHHHHHHHHHhc
Confidence 5554 3999999998765
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.99 E-value=1.4e+03 Score=28.77 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=10.9
Q ss_pred cccccchHHHHHHHH
Q 003396 143 DRELVTPWFKFLWET 157 (823)
Q Consensus 143 dr~~vtPwlkFLWEs 157 (823)
..++.+|.++|+..|
T Consensus 63 tka~~~Pv~~~~~~t 77 (961)
T KOG4673|consen 63 TKALFDPVMSFMGNT 77 (961)
T ss_pred cccccccHHHhcccc
Confidence 345678999998764
No 69
>COG3124 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.77 E-value=2.2e+02 Score=29.31 Aligned_cols=56 Identities=23% Similarity=0.395 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhh-hhcCCCChhH-------HHHHHHHHHHHHHH
Q 003396 231 LDTRFEQLKVATDLQLWQEAFYSVEDIHGLMC-MVKKTPKPSL-------LVVYYAKLTEIFWI 286 (823)
Q Consensus 231 LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~-~skk~pkp~~-------ma~YYekLa~IFwv 286 (823)
+--||+-||-..-=|-|=+-|+-..-|-+.++ |+.+.|++.- +..-|.-|..-||+
T Consensus 116 ~P~Rf~~ln~~lwse~WL~~Yre~~~ir~vL~gMa~R~prl~~L~~Sw~~l~~~Y~~Lea~F~~ 179 (193)
T COG3124 116 LPERFVRLNNYLWSEQWLVRYREMAFIRNVLNGMASRRPRLDALRDSWYDLDAHYDALEARFWQ 179 (193)
T ss_pred CcHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhchHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999987755 9999999854 45567778777875
No 70
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=25.73 E-value=1.2e+03 Score=27.99 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhh
Q 003396 437 VQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLS 471 (823)
Q Consensus 437 ~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~ 471 (823)
.-++.|| .+.+.+.+.=+.-++..|.++-+.+|.
T Consensus 104 ~~lA~fi-t~YNAv~R~~~~~~~~~Y~~~v~~~l~ 137 (489)
T PF05262_consen 104 ETLATFI-TIYNAVYRGDLDYFKKKYKNVVIKNLT 137 (489)
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHhhHHHHhhcC
Confidence 3455555 344556666666677777777666665
No 71
>COG3556 Predicted membrane protein [Function unknown]
Probab=25.52 E-value=80 Score=31.30 Aligned_cols=36 Identities=22% Similarity=0.575 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhC-------chhHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHhhccCCC
Q 003396 275 VYYAKLTEIFWISS-------SHLYHAYAWFKLFTLQKTYNKNLSLKDLQLIASSVVLAALLVVPY 333 (823)
Q Consensus 275 ~YYekLa~IFwvs~-------n~LfHA~A~~k~f~l~k~~~~~~s~ee~~~~AS~vlLAaLsIP~~ 333 (823)
.--.-+++|||-.. |++||| +|+-.|+.+-||||++
T Consensus 55 VlisGi~rv~~~~KG~dfYv~n~~F~a-----------------------KmglFvlvgLlSi~PT 97 (150)
T COG3556 55 VLISGIARVFWSGKGVDFYVHNWMFHA-----------------------KMGLFVLVGLLSIIPT 97 (150)
T ss_pred HHHHHHHHHHHhccceeEEEechHHHH-----------------------HHHHHHHHHHHhccch
Confidence 34457899999874 555554 4788999999999986
No 72
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.51 E-value=1.1e+02 Score=30.89 Aligned_cols=47 Identities=9% Similarity=0.129 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCCCChHHHHHHHH
Q 003396 440 SRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPFFDFAVVEKISV 487 (823)
Q Consensus 440 ~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f~~~~~iEk~lv 487 (823)
+.-+..+++..-.|.|+-++|.|+||.++.|..++. ++..+.-+.|+
T Consensus 108 k~imaAf~D~~~kR~FaLl~qAYssI~~~D~A~FlG-l~~ddAtk~il 154 (197)
T KOG4414|consen 108 KDIMAAFRDATRKRAFALLLQAYSSIIADDFAAFLG-LPEDDATKGIL 154 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHH
Confidence 334555667788999999999999999999988764 34555555554
No 73
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=25.02 E-value=5.8e+02 Score=30.17 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhcCChhhhH
Q 003396 392 QEVKDLYNLLEHEFLPLDLA 411 (823)
Q Consensus 392 ~ev~~LY~lLE~~f~Pl~l~ 411 (823)
.+..+||. |.+.+|+.-|
T Consensus 89 qe~~~LyK--e~ginP~~gc 106 (429)
T PRK00247 89 QKQKDLNK--EYGYNPLAGC 106 (429)
T ss_pred HHHHHHHH--HcCCCchHHH
Confidence 35555555 4566776443
No 74
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.58 E-value=1.2e+03 Score=27.57 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=65.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhHhceeehhhhhhccCC-CChHHHHHHHHHHHhcCceeEEEeccCCeEEEecC
Q 003396 436 EVQLSRYIPALEKLVTLRVLQQVSEVYQMMRIESLSQMIPF-FDFAVVEKISVEAVKHNFIAMKIDHMRGVVVFCNL 511 (823)
Q Consensus 436 ~~~~~~Yv~~L~~vi~~Rll~qlSqvY~ti~i~~l~~l~~f-~~~~~iEk~lv~a~~~~~l~vrIDH~~~~i~F~~~ 511 (823)
|++++.-|+.|-..|-.|.+.|.-+=|.|++++.... .| .|...+|+-|++.+-.|.|+.|||--.++++-.+.
T Consensus 337 D~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~--af~~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~ 411 (466)
T KOG0686|consen 337 DMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAE--AFNTSVAILESELLELILEGKISGRIDSHNKILYARDA 411 (466)
T ss_pred chhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHH--HhcccHHHHHHHHHHHHHccchheeeccccceeeeccc
Confidence 5788888999999999999999999999999877654 23 48899999999999999999999999999998765
No 75
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=24.33 E-value=4.5e+02 Score=30.41 Aligned_cols=119 Identities=17% Similarity=0.312 Sum_probs=76.1
Q ss_pred HHHHHhhcCccccCcccccccchHH----HHHHHHHHHHHHhh-cc----------chhhHHHHHHHHHHHHHHHHhhCc
Q 003396 127 DLMLSYVSGEKGKDRSDRELVTPWF----KFLWETYRTVLEIL-RN----------NSKLEALYAMTAHRAFQFCKQYKR 191 (823)
Q Consensus 127 ~lLlsavs~e~~~drtdr~~vtPwl----kFLWEsYR~vLdiL-Rn----------N~kLE~lY~~ta~~Af~FClkY~R 191 (823)
+|++++++.++.....+|.--..|+ .-+|.+|..-.--| +. ..-++..-..+-..|+-||-
T Consensus 234 nL~l~~~~~~~~~~~~~~~~~~~~ll~~i~~~w~~F~~~F~~lw~~~~~~~~~~~~~~~~~~~l~~i~~d~~Gfag---- 309 (370)
T TIGR01767 234 NLFLNALSRDGADQKGKRDAMREPLLEHVNQVWETFEETFSELWQKDSLDMVYANIDGYLTDTLSHIWEDAIGFAG---- 309 (370)
T ss_pred HHHHHHhCccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHhH----
Confidence 6899999887665444555556665 45676665444222 11 12235556677778888885
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccCCCCCCCCChhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhh
Q 003396 192 TTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCM 263 (823)
Q Consensus 192 ktEFrRLce~LR~Hl~~~~K~~~~~~~~~ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~ 263 (823)
|+++|.=+.- .|..||..-+....=.......|..+..|=+=.+.|+|++|+..++.+
T Consensus 310 -------~e~iRR~vG~-------Ahv~D~~~I~d~~~R~~~er~~l~~g~~li~~~~~~~~~~~~~~~~~~ 367 (370)
T TIGR01767 310 -------CELIRRTIGL-------AHVADLDTIVDFAKRIGCKRLALETGRAFIVKRSEIKSIDEVIELFAL 367 (370)
T ss_pred -------HHHHHHhccc-------ccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 8888874433 345555433333333444456889999988999999999999887664
No 76
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=24.18 E-value=8.9e+02 Score=26.97 Aligned_cols=52 Identities=25% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH-HHHhCchhHHHH-HH----------------HHHHHHhhhhCCCCCHHHHHHHHHHHHHHh
Q 003396 273 LVVYYAKLTEI-FWISSSHLYHAY-AW----------------FKLFTLQKTYNKNLSLKDLQLIASSVVLAA 327 (823)
Q Consensus 273 ma~YYekLa~I-Fwvs~n~LfHA~-A~----------------~k~f~l~k~~~~~~s~ee~~~~AS~vlLAa 327 (823)
+-.+|+.|-.- ||.|+ |++=|+ .. ...|...|...|.+|..| .+...++||.
T Consensus 81 ~~~~y~~L~~~gFk~~~-y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~--D~~~a~lLA~ 150 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSE-YLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPE--DYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHhccCccC-hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCcc--chhHHHHHhc
Confidence 55566666666 44444 444332 22 334666677788888665 3555555555
No 77
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=23.73 E-value=6.5e+02 Score=26.95 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003396 557 VDKEHKRLLARKSIIEKRKEEHERQLIEMEREEESRRLKQQKITEEAEQKRLAAEFEHRKNQRILREIEEREL 629 (823)
Q Consensus 557 ~~~eh~~~l~Rk~~ie~rKE~~e~~~~~~e~ee~~~r~~~~~~~~eaE~~Rl~~E~~~Re~er~~~E~e~~~~ 629 (823)
++.+..++-.+-+..+..|+.++...++.+ .+-+-.++..+|.++-+++|..+|++-++.
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k-------------~K~e~~e~r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLK-------------KKLETDEIRSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777777665443211 111222333444455666777777776653
No 78
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.36 E-value=3.8e+02 Score=32.73 Aligned_cols=7 Identities=14% Similarity=0.397 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003396 633 QALLEEA 639 (823)
Q Consensus 633 ~~~l~~~ 639 (823)
++..++.
T Consensus 63 ~~~~~~~ 69 (567)
T PLN03086 63 DQQMQES 69 (567)
T ss_pred HHHHHHH
Confidence 3444433
No 79
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.81 E-value=1.6e+03 Score=28.44 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 003396 231 LDTRFEQLKVAT 242 (823)
Q Consensus 231 LetRf~QL~~Av 242 (823)
|+.++.+|..-.
T Consensus 232 ln~~l~~l~~~~ 243 (782)
T PRK00409 232 LNNEIRELRNKE 243 (782)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 80
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.61 E-value=1.7e+03 Score=28.22 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003396 551 AGLGEIVDKEHKRLLARKSIIEKRKEEHE 579 (823)
Q Consensus 551 ~~~~~~~~~eh~~~l~Rk~~ie~rKE~~e 579 (823)
....+.++.++..+...+..+++.+++.+
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~ 542 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQE 542 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 81
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=20.96 E-value=9e+02 Score=24.65 Aligned_cols=149 Identities=13% Similarity=0.091 Sum_probs=79.0
Q ss_pred ccHHHHHHHHHHcCCcccccHHHHHHHHHHhhc-------CChhhhHHhhHHHHHHHhhhcCCcccCCCCChhhhhhhHH
Q 003396 372 LSRSSLLSELVSKGVMSCATQEVKDLYNLLEHE-------FLPLDLASKVQPLLAKISKYGGKLASASSVPEVQLSRYIP 444 (823)
Q Consensus 372 PtR~~Ll~~l~~~~vl~~a~~ev~~LY~lLE~~-------f~Pl~l~~k~~p~L~~l~~~~~~~~~~~~~~~~~~~~Yv~ 444 (823)
|--.+|+.-+...|-+..+..++..+-.+++.+ .+|.-=...=..+|..+-.... ++.+..++.
T Consensus 10 ~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~~~---------~~~~~nfl~ 80 (179)
T PRK13436 10 NYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSAKI---------DIYLVNFLK 80 (179)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhccC---------CHHHHHHHH
Confidence 445678888888888888888988888888743 2553322333344444432100 233444443
Q ss_pred HHHHHHHHHHHHHHHhHhceeehhhhhhc----c-CC-CChHHHHHHHHHHHhcC----ceeEEEec---cCCeEEEecC
Q 003396 445 ALEKLVTLRVLQQVSEVYQMMRIESLSQM----I-PF-FDFAVVEKISVEAVKHN----FIAMKIDH---MRGVVVFCNL 511 (823)
Q Consensus 445 ~L~~vi~~Rll~qlSqvY~ti~i~~l~~l----~-~f-~~~~~iEk~lv~a~~~~----~l~vrIDH---~~~~i~F~~~ 511 (823)
-|-.-==..+|..+...|..+--...... . .+ +|..+++++.-...+.- .+...||- ..=+|.+|+.
T Consensus 81 ll~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g~~v~l~~~vDpslIGGi~i~~gd~ 160 (179)
T PRK13436 81 ILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLNKKVHLVNKIDPKLIAGIKIKVDNK 160 (179)
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHCCeEEEEeecCHHHcCceEEEECCE
Confidence 33322222344444444433322221111 0 12 26666666654333321 23334555 3335677776
Q ss_pred CCCchhhhHHHHHHHHHHH
Q 003396 512 GLESDGLRDHLTIFAQSLN 530 (823)
Q Consensus 512 ~~~s~~ir~qL~~la~~L~ 530 (823)
.++.. |+++|..|.+.|.
T Consensus 161 viD~S-ik~~L~~l~~~l~ 178 (179)
T PRK13436 161 VFENS-IKSKLKELKKQVL 178 (179)
T ss_pred Eeehh-HHHHHHHHHHHHh
Confidence 66654 9999999988764
No 82
>PF11728 DUF939_C: DUF939 C-terminal domain; InterPro: IPR021062 This entry represents a C-terminal domain found in a set of bacterial proteins. The proteins are about 160 amino acids in length and are predicted to be multi-pass membrane proteins. ; PDB: 3KMI_B.
Probab=20.88 E-value=8.9e+02 Score=24.59 Aligned_cols=89 Identities=10% Similarity=0.084 Sum_probs=59.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhHHHHHhhhhcC-CCChhHHHHHHHHHHHHHHHhCchhHHHHHHHH
Q 003396 221 LSSPESLQLYLDTRFEQLKVATDLQLWQEAFYSVEDIHGLMCMVKK-TPKPSLLVVYYAKLTEIFWISSSHLYHAYAWFK 299 (823)
Q Consensus 221 ls~peT~q~~LetRf~QL~~Av~LeLWqEAFrsvEDI~~Lm~~skk-~pkp~~ma~YYekLa~IFwvs~n~LfHA~A~~k 299 (823)
++++.....|++-|-.|+++ +++++..+.-... +|-..++|.|.+.++.-+-.+++...=---+..
T Consensus 62 ~~~~~yy~~Yf~MR~~Q~~i-------------L~~M~~~l~~i~~~~~q~~~ia~~~~~~a~~~~e~n~~~~ll~~L~~ 128 (167)
T PF11728_consen 62 LRNENYYYHYFEMREKQLEI-------------LKRMYPNLSKIYMSPKQAEIIADFLEELAESLHENNTAEELLEELEE 128 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHTT-SS--HHHHHHHHHHHHHHH----TTHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 67888888999999999887 6777777664444 345688999999999988777765555455566
Q ss_pred HHHHhhhhCCCCCHHHHHHHHHH
Q 003396 300 LFTLQKTYNKNLSLKDLQLIASS 322 (823)
Q Consensus 300 ~f~l~k~~~~~~s~ee~~~~AS~ 322 (823)
++.-++...=+-|.+|+..=|+.
T Consensus 129 l~~~fr~~~LP~TReEFE~RA~L 151 (167)
T PF11728_consen 129 LKEEFREMPLPKTREEFENRAAL 151 (167)
T ss_dssp HHHHHHTS---SSHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHH
Confidence 66666766667788888765553
No 83
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.61 E-value=1.3e+02 Score=24.19 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=23.5
Q ss_pred HHhHHHHHhcCChHHHHHHHHHHHhc
Q 003396 11 LNQAEALINVGQKQDALQVLHDLITS 36 (823)
Q Consensus 11 LKRA~ELi~vGq~~~AL~~L~d~i~s 36 (823)
|--|..+|..|.++.|..+|.+++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 55689999999999999999999965
Done!