Query 003397
Match_columns 823
No_of_seqs 775 out of 4208
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 22:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.8E-81 3.9E-86 723.1 74.6 635 138-804 87-723 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-80 2.3E-85 716.8 72.5 639 139-807 53-692 (857)
3 PLN03218 maturation of RBCL 1; 100.0 3.2E-69 6.9E-74 605.2 70.4 547 208-773 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.7E-68 3.7E-73 599.4 68.7 546 174-738 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.7E-62 1.2E-66 547.6 56.3 510 139-738 89-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.4E-61 3.1E-66 544.4 52.0 510 210-772 86-610 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.1E-36 1.5E-40 355.6 84.6 642 140-806 230-871 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-35 7.7E-40 349.6 86.8 636 145-806 201-837 (899)
9 PRK11447 cellulose synthase su 100.0 3.2E-26 7E-31 270.8 77.2 637 140-800 31-739 (1157)
10 PRK11447 cellulose synthase su 100.0 3.7E-25 8E-30 261.9 74.8 608 179-807 31-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.7E-22 5.9E-27 225.6 73.7 614 147-810 54-715 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2.5E-21 5.3E-26 217.9 73.7 616 139-805 80-744 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.9E-20 4.1E-25 195.8 62.4 662 138-815 42-759 (1018)
14 KOG2002 TPR-containing nuclear 99.9 7.1E-20 1.5E-24 191.6 60.0 557 153-730 146-744 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 1.7E-21 3.7E-26 192.8 40.7 439 320-810 51-494 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 7.8E-21 1.7E-25 188.1 39.0 450 285-789 51-507 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 6.6E-18 1.4E-22 188.0 54.2 258 505-804 307-574 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 8.5E-17 1.8E-21 179.1 56.1 457 285-803 130-599 (615)
19 PRK15174 Vi polysaccharide exp 99.9 1.8E-17 3.8E-22 183.4 46.5 408 397-814 15-433 (656)
20 KOG2076 RNA polymerase III tra 99.9 7.9E-15 1.7E-19 153.4 60.9 642 143-797 145-891 (895)
21 PRK11788 tetratricopeptide rep 99.9 2.3E-18 5E-23 182.3 35.9 163 393-560 186-351 (389)
22 PRK11788 tetratricopeptide rep 99.9 3.4E-18 7.4E-23 181.0 36.8 307 429-773 42-354 (389)
23 KOG0495 HAT repeat protein [RN 99.9 7.4E-14 1.6E-18 140.2 63.6 623 151-815 265-893 (913)
24 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.6E-21 176.8 47.7 361 361-731 14-381 (656)
25 PRK10049 pgaA outer membrane p 99.8 5E-16 1.1E-20 176.0 51.1 414 350-806 13-461 (765)
26 PRK14574 hmsH outer membrane p 99.8 2.8E-15 6E-20 165.9 54.7 454 321-807 38-519 (822)
27 KOG4422 Uncharacterized conser 99.8 1.7E-15 3.7E-20 144.2 44.0 448 210-696 115-590 (625)
28 PRK10049 pgaA outer membrane p 99.8 3.7E-15 8.1E-20 168.9 52.5 431 280-747 13-470 (765)
29 KOG2076 RNA polymerase III tra 99.8 2.2E-13 4.8E-18 142.7 58.2 623 174-804 135-852 (895)
30 KOG0495 HAT repeat protein [RN 99.8 6.8E-13 1.5E-17 133.5 59.2 581 190-807 265-852 (913)
31 KOG4422 Uncharacterized conser 99.8 2.7E-14 5.8E-19 136.2 46.2 446 246-731 116-590 (625)
32 PRK14574 hmsH outer membrane p 99.8 4.2E-14 9E-19 156.6 53.9 427 293-730 45-512 (822)
33 KOG2003 TPR repeat-containing 99.8 1.7E-15 3.7E-20 145.0 36.9 480 214-752 204-709 (840)
34 KOG2003 TPR repeat-containing 99.8 5.7E-15 1.2E-19 141.5 37.5 493 282-799 201-720 (840)
35 KOG1155 Anaphase-promoting com 99.7 2.4E-12 5.3E-17 124.6 45.4 386 418-822 160-555 (559)
36 KOG1915 Cell cycle control pro 99.7 4.6E-11 1E-15 116.0 50.4 438 295-780 86-548 (677)
37 KOG1915 Cell cycle control pro 99.7 2.1E-10 4.6E-15 111.5 51.9 431 263-709 89-547 (677)
38 KOG2047 mRNA splicing factor [ 99.7 9.4E-10 2E-14 111.2 57.7 563 177-789 103-711 (835)
39 KOG4318 Bicoid mRNA stability 99.7 2.1E-12 4.5E-17 134.7 39.0 558 197-800 11-624 (1088)
40 KOG4318 Bicoid mRNA stability 99.6 5.4E-12 1.2E-16 131.6 38.6 578 174-797 23-657 (1088)
41 KOG3785 Uncharacterized conser 99.6 1.9E-11 4.2E-16 114.0 36.7 153 613-770 339-494 (557)
42 KOG1173 Anaphase-promoting com 99.6 2.4E-11 5.2E-16 121.1 38.9 276 489-805 241-522 (611)
43 KOG0547 Translocase of outer m 99.6 1.1E-11 2.3E-16 121.0 34.3 194 602-802 365-567 (606)
44 KOG2047 mRNA splicing factor [ 99.6 1.4E-08 3.1E-13 103.0 56.8 513 283-811 103-698 (835)
45 KOG1155 Anaphase-promoting com 99.6 4E-10 8.6E-15 109.6 42.1 366 312-764 159-534 (559)
46 COG2956 Predicted N-acetylgluc 99.6 1.9E-11 4.2E-16 113.0 30.9 284 263-556 51-347 (389)
47 KOG1126 DNA-binding cell divis 99.5 3.7E-12 8E-17 129.6 25.2 297 507-814 334-633 (638)
48 TIGR00540 hemY_coli hemY prote 99.5 4.6E-11 1E-15 125.6 34.8 290 468-800 95-398 (409)
49 PF13429 TPR_15: Tetratricopep 99.5 8.3E-14 1.8E-18 139.0 12.7 262 497-800 13-276 (280)
50 PRK10747 putative protoheme IX 99.5 7.6E-11 1.6E-15 123.2 35.0 284 470-802 97-391 (398)
51 KOG0547 Translocase of outer m 99.5 2.9E-10 6.2E-15 111.2 35.9 221 538-765 337-565 (606)
52 KOG1173 Anaphase-promoting com 99.5 8.4E-10 1.8E-14 110.3 39.7 503 139-710 18-530 (611)
53 PRK10747 putative protoheme IX 99.5 7.5E-11 1.6E-15 123.2 34.6 289 435-765 97-389 (398)
54 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.6E-15 122.4 34.3 293 434-765 96-398 (409)
55 KOG1156 N-terminal acetyltrans 99.5 6.2E-09 1.4E-13 105.9 43.8 470 285-804 11-514 (700)
56 KOG1126 DNA-binding cell divis 99.5 2E-11 4.3E-16 124.4 26.2 283 191-487 334-621 (638)
57 PF13429 TPR_15: Tetratricopep 99.5 4.2E-13 9.1E-18 133.9 13.5 262 462-765 13-276 (280)
58 KOG3617 WD40 and TPR repeat-co 99.5 2.6E-08 5.7E-13 103.6 46.5 561 149-808 740-1366(1416)
59 KOG3785 Uncharacterized conser 99.5 1.2E-08 2.6E-13 95.8 39.9 458 288-786 63-535 (557)
60 KOG4162 Predicted calmodulin-b 99.5 5.5E-08 1.2E-12 101.3 48.6 140 669-812 652-794 (799)
61 KOG1156 N-terminal acetyltrans 99.5 7.2E-08 1.6E-12 98.4 48.5 127 599-730 373-510 (700)
62 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.5E-14 105.0 33.6 285 435-764 97-388 (400)
63 COG2956 Predicted N-acetylgluc 99.4 8.5E-10 1.8E-14 102.3 30.6 287 225-520 49-346 (389)
64 KOG1174 Anaphase-promoting com 99.4 5.1E-08 1.1E-12 93.7 42.4 274 488-806 228-505 (564)
65 COG3071 HemY Uncharacterized e 99.4 4.4E-09 9.4E-14 101.1 35.4 287 365-696 97-390 (400)
66 KOG2376 Signal recognition par 99.4 1.7E-08 3.7E-13 101.7 40.9 149 647-799 356-518 (652)
67 KOG0985 Vesicle coat protein c 99.4 4E-07 8.6E-12 97.2 50.8 545 214-801 609-1308(1666)
68 KOG0985 Vesicle coat protein c 99.4 1.8E-06 4E-11 92.3 55.7 111 667-792 1104-1214(1666)
69 TIGR02521 type_IV_pilW type IV 99.4 6.3E-10 1.4E-14 108.7 27.0 203 597-803 31-234 (234)
70 PF12569 NARP1: NMDA receptor- 99.3 1.1E-07 2.5E-12 100.0 43.8 260 290-558 12-293 (517)
71 KOG2376 Signal recognition par 99.3 1.5E-07 3.2E-12 95.1 41.0 149 612-764 356-518 (652)
72 KOG4162 Predicted calmodulin-b 99.3 7.7E-07 1.7E-11 93.0 47.0 438 276-765 317-782 (799)
73 KOG1129 TPR repeat-containing 99.3 3E-10 6.6E-15 105.1 19.8 240 492-807 223-464 (478)
74 KOG3617 WD40 and TPR repeat-co 99.3 3.2E-06 7E-11 88.6 48.3 238 185-483 737-993 (1416)
75 KOG1840 Kinesin light chain [C 99.3 5.3E-09 1.1E-13 108.4 28.6 243 493-764 200-477 (508)
76 KOG1129 TPR repeat-containing 99.3 3.8E-09 8.2E-14 98.0 24.4 228 216-451 228-458 (478)
77 KOG3616 Selective LIM binding 99.2 1E-06 2.3E-11 90.9 43.0 254 140-445 651-905 (1636)
78 KOG1840 Kinesin light chain [C 99.2 8.9E-09 1.9E-13 106.7 28.5 240 526-799 198-477 (508)
79 PF12569 NARP1: NMDA receptor- 99.2 9.3E-07 2E-11 93.3 43.5 265 179-453 7-293 (517)
80 PF13041 PPR_2: PPR repeat fam 99.2 4E-11 8.6E-16 82.6 6.7 50 209-258 1-50 (50)
81 KOG3616 Selective LIM binding 99.2 2.9E-06 6.2E-11 87.7 42.8 386 190-655 545-931 (1636)
82 COG3063 PilF Tfp pilus assembl 99.2 8.7E-09 1.9E-13 91.4 21.7 204 598-806 36-241 (250)
83 KOG1127 TPR repeat-containing 99.2 3.8E-06 8.3E-11 90.2 45.0 566 212-805 493-1108(1238)
84 PRK12370 invasion protein regu 99.2 2.5E-08 5.4E-13 109.3 30.4 148 298-448 320-467 (553)
85 TIGR02521 type_IV_pilW type IV 99.2 1.5E-08 3.3E-13 98.8 25.9 199 282-484 31-230 (234)
86 PF13041 PPR_2: PPR repeat fam 99.2 7.7E-11 1.7E-15 81.1 6.6 48 351-398 2-49 (50)
87 COG3063 PilF Tfp pilus assembl 99.2 2.8E-08 6E-13 88.3 23.9 184 634-822 37-221 (250)
88 PRK12370 invasion protein regu 99.2 2E-08 4.4E-13 110.0 27.9 249 297-556 276-535 (553)
89 KOG1127 TPR repeat-containing 99.2 2.3E-05 5.1E-10 84.4 51.7 637 153-815 474-1188(1238)
90 PRK11189 lipoprotein NlpI; Pro 99.1 3.9E-08 8.5E-13 98.2 26.7 202 600-810 67-275 (296)
91 KOG0548 Molecular co-chaperone 99.1 4.7E-07 1E-11 90.8 33.3 103 291-397 11-114 (539)
92 KOG1174 Anaphase-promoting com 99.1 1.1E-05 2.3E-10 78.2 41.8 271 349-628 229-502 (564)
93 KOG1914 mRNA cleavage and poly 99.0 3E-05 6.6E-10 78.0 40.9 428 349-805 17-505 (656)
94 KOG4340 Uncharacterized conser 99.0 2.4E-06 5.2E-11 78.8 29.2 350 179-553 13-372 (459)
95 KOG4340 Uncharacterized conser 99.0 1.2E-06 2.7E-11 80.6 27.2 424 355-806 13-448 (459)
96 KOG1914 mRNA cleavage and poly 99.0 7.2E-05 1.6E-09 75.4 42.2 176 613-790 347-528 (656)
97 KOG2053 Mitochondrial inherita 99.0 0.00013 2.8E-09 78.2 51.8 224 149-384 21-258 (932)
98 KOG1924 RhoA GTPase effector D 99.0 3.1E-06 6.8E-11 87.9 31.5 17 316-332 837-853 (1102)
99 KOG0548 Molecular co-chaperone 99.0 5.8E-06 1.3E-10 83.2 32.6 405 360-807 10-461 (539)
100 PF04733 Coatomer_E: Coatomer 98.9 5.1E-08 1.1E-12 95.5 18.1 155 640-805 110-269 (290)
101 cd05804 StaR_like StaR_like; a 98.9 6.3E-06 1.4E-10 86.0 34.7 262 536-802 52-337 (355)
102 PRK11189 lipoprotein NlpI; Pro 98.9 1.3E-06 2.7E-11 87.4 27.2 218 296-522 40-266 (296)
103 KOG2053 Mitochondrial inherita 98.9 0.00031 6.7E-09 75.5 50.1 223 188-418 21-257 (932)
104 PRK04841 transcriptional regul 98.9 2.6E-05 5.6E-10 92.7 40.2 157 432-588 384-557 (903)
105 KOG0624 dsRNA-activated protei 98.8 8.4E-05 1.8E-09 70.4 33.1 193 606-806 164-375 (504)
106 cd05804 StaR_like StaR_like; a 98.8 3.2E-05 7E-10 80.7 34.7 89 324-413 121-212 (355)
107 KOG0624 dsRNA-activated protei 98.8 0.00015 3.3E-09 68.7 35.8 206 322-556 43-252 (504)
108 KOG3081 Vesicle coat complex C 98.8 1.2E-05 2.6E-10 73.5 25.9 175 620-805 96-275 (299)
109 PRK10370 formate-dependent nit 98.8 2.3E-06 5E-11 79.2 21.1 163 639-819 23-189 (198)
110 KOG1125 TPR repeat-containing 98.7 1.5E-06 3.3E-11 88.1 21.0 258 467-793 295-563 (579)
111 PRK04841 transcriptional regul 98.7 8.6E-05 1.9E-09 88.3 38.8 374 359-765 348-759 (903)
112 PF04733 Coatomer_E: Coatomer 98.7 1.3E-06 2.9E-11 85.7 18.8 250 501-766 10-265 (290)
113 TIGR03302 OM_YfiO outer membra 98.7 3E-06 6.5E-11 82.3 20.9 63 742-804 171-235 (235)
114 PLN02789 farnesyltranstransfer 98.7 2.7E-05 6E-10 77.5 27.8 183 612-800 87-301 (320)
115 KOG1125 TPR repeat-containing 98.7 1.5E-05 3.2E-10 81.1 25.4 261 429-758 292-563 (579)
116 KOG1924 RhoA GTPase effector D 98.6 6E-08 1.3E-12 100.1 7.8 11 3-13 525-535 (1102)
117 KOG1128 Uncharacterized conser 98.6 2.1E-06 4.6E-11 89.3 18.7 219 525-765 396-615 (777)
118 COG5010 TadD Flp pilus assembl 98.6 1.5E-05 3.1E-10 73.2 20.5 159 636-799 70-229 (257)
119 PRK15359 type III secretion sy 98.6 3.7E-06 8.1E-11 73.5 16.5 113 688-807 14-127 (144)
120 PF12854 PPR_1: PPR repeat 98.6 9.4E-08 2E-12 58.6 4.1 32 382-413 2-33 (34)
121 TIGR02552 LcrH_SycD type III s 98.6 2.9E-06 6.2E-11 74.1 15.1 128 689-822 5-133 (135)
122 KOG1128 Uncharacterized conser 98.5 0.00015 3.2E-09 76.1 29.0 221 489-730 395-615 (777)
123 KOG1070 rRNA processing protei 98.5 5.6E-05 1.2E-09 84.5 27.0 185 495-683 1500-1687(1710)
124 KOG1070 rRNA processing protei 98.5 7.3E-05 1.6E-09 83.7 27.5 229 349-583 1455-1692(1710)
125 KOG3081 Vesicle coat complex C 98.5 7.8E-05 1.7E-09 68.3 22.9 139 268-416 94-236 (299)
126 PRK14720 transcript cleavage f 98.5 5E-05 1.1E-09 84.4 26.3 237 492-783 31-268 (906)
127 PRK10370 formate-dependent nit 98.5 2.7E-05 6E-10 72.1 20.8 118 645-766 52-173 (198)
128 PLN02789 farnesyltranstransfer 98.5 0.0001 2.2E-09 73.6 26.1 127 288-417 43-172 (320)
129 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.7E-12 57.5 4.0 32 347-378 2-33 (34)
130 COG4783 Putative Zn-dependent 98.4 0.00015 3.4E-09 72.6 25.2 156 641-819 315-471 (484)
131 PRK15179 Vi polysaccharide bio 98.4 7.6E-05 1.6E-09 82.3 25.7 131 632-765 86-216 (694)
132 TIGR03302 OM_YfiO outer membra 98.4 4.1E-05 9E-10 74.3 20.6 166 600-766 36-232 (235)
133 PRK14720 transcript cleavage f 98.4 0.00016 3.4E-09 80.5 26.7 229 525-808 29-259 (906)
134 KOG3060 Uncharacterized conser 98.4 0.00036 7.8E-09 63.6 23.1 184 577-766 27-220 (289)
135 PRK15359 type III secretion sy 98.3 4.3E-05 9.4E-10 66.8 16.3 91 673-765 30-120 (144)
136 KOG0553 TPR repeat-containing 98.3 1.2E-05 2.6E-10 75.2 12.5 106 710-821 89-196 (304)
137 COG4783 Putative Zn-dependent 98.3 0.00025 5.4E-09 71.2 22.4 131 671-805 310-441 (484)
138 COG5010 TadD Flp pilus assembl 98.3 0.00021 4.6E-09 65.7 20.0 131 631-764 99-229 (257)
139 PRK15179 Vi polysaccharide bio 98.2 0.00043 9.3E-09 76.5 25.5 135 666-805 85-221 (694)
140 PF09976 TPR_21: Tetratricopep 98.2 9.5E-05 2.1E-09 65.0 15.4 125 670-798 15-144 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.4E-05 1.8E-09 75.5 16.7 125 671-802 173-298 (395)
142 TIGR02552 LcrH_SycD type III s 98.1 0.00012 2.7E-09 63.7 15.2 94 635-730 20-113 (135)
143 PRK15363 pathogenicity island 98.1 0.00015 3.3E-09 62.0 14.1 113 703-820 36-149 (157)
144 KOG3060 Uncharacterized conser 98.1 0.0033 7.2E-08 57.6 22.4 188 539-730 24-219 (289)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00025 5.3E-09 62.4 15.6 126 635-763 15-144 (145)
146 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00018 3.9E-09 61.0 13.1 101 704-806 4-110 (119)
147 cd00189 TPR Tetratricopeptide 97.9 0.00013 2.7E-09 59.0 11.2 97 705-803 3-99 (100)
148 KOG0550 Molecular chaperone (D 97.9 0.0015 3.2E-08 64.0 19.4 181 633-818 169-368 (486)
149 TIGR00756 PPR pentatricopeptid 97.9 2E-05 4.4E-10 49.3 4.5 33 213-245 2-34 (35)
150 PF12895 Apc3: Anaphase-promot 97.9 3.1E-05 6.6E-10 60.5 5.8 82 715-798 2-84 (84)
151 TIGR00756 PPR pentatricopeptid 97.9 2.8E-05 6E-10 48.7 4.6 33 319-351 2-34 (35)
152 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00059 1.3E-08 69.5 16.2 125 284-414 171-295 (395)
153 PF13812 PPR_3: Pentatricopept 97.9 2.5E-05 5.4E-10 48.5 4.1 33 212-244 2-34 (34)
154 PRK02603 photosystem I assembl 97.8 0.00066 1.4E-08 61.8 14.9 114 669-805 37-153 (172)
155 PLN03088 SGT1, suppressor of 97.8 0.00048 1E-08 70.7 15.5 87 676-765 11-98 (356)
156 PF13432 TPR_16: Tetratricopep 97.8 5.9E-05 1.3E-09 55.5 6.2 62 743-805 3-64 (65)
157 KOG2041 WD40 repeat protein [G 97.8 0.071 1.5E-06 56.2 30.0 205 314-553 689-904 (1189)
158 KOG2041 WD40 repeat protein [G 97.8 0.072 1.6E-06 56.2 31.8 207 349-587 689-903 (1189)
159 PF10037 MRP-S27: Mitochondria 97.8 0.00058 1.3E-08 69.8 14.4 122 279-400 63-186 (429)
160 PF14559 TPR_19: Tetratricopep 97.8 0.00011 2.4E-09 54.6 7.1 66 748-816 2-67 (68)
161 PF13414 TPR_11: TPR repeat; P 97.7 0.00011 2.4E-09 54.8 6.9 67 736-803 2-69 (69)
162 PF14938 SNAP: Soluble NSF att 97.7 0.0021 4.7E-08 63.8 17.8 126 682-808 89-232 (282)
163 PF08579 RPM2: Mitochondrial r 97.7 0.00071 1.5E-08 53.4 10.9 82 213-294 27-116 (120)
164 PRK10153 DNA-binding transcrip 97.7 0.0024 5.3E-08 68.4 19.0 69 736-806 419-487 (517)
165 PF13812 PPR_3: Pentatricopept 97.7 6.8E-05 1.5E-09 46.5 4.5 32 704-735 3-34 (34)
166 COG4700 Uncharacterized protei 97.7 0.013 2.8E-07 50.9 19.0 130 664-797 86-218 (251)
167 PF05843 Suf: Suppressor of fo 97.7 0.0012 2.5E-08 65.3 15.0 129 634-765 3-135 (280)
168 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0014 3.1E-08 55.4 13.7 99 669-767 4-106 (119)
169 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.085 1.8E-06 52.8 38.0 133 668-804 398-534 (660)
170 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.091 2E-06 52.6 39.7 148 631-784 396-547 (660)
171 CHL00033 ycf3 photosystem I as 97.6 0.0015 3.3E-08 59.2 13.7 103 703-806 36-154 (168)
172 KOG0553 TPR repeat-containing 97.6 0.0011 2.4E-08 62.5 12.5 102 639-745 88-190 (304)
173 PF14938 SNAP: Soluble NSF att 97.6 0.0042 9.2E-08 61.7 17.6 135 669-804 116-269 (282)
174 PF01535 PPR: PPR repeat; Int 97.6 0.00011 2.3E-09 44.4 3.6 30 213-242 2-31 (31)
175 PRK10153 DNA-binding transcrip 97.6 0.0066 1.4E-07 65.2 19.3 140 626-768 331-484 (517)
176 PF01535 PPR: PPR repeat; Int 97.6 0.00012 2.6E-09 44.1 3.8 29 319-347 2-30 (31)
177 PLN03088 SGT1, suppressor of 97.5 0.0022 4.7E-08 65.9 15.2 98 641-742 11-108 (356)
178 PF10037 MRP-S27: Mitochondria 97.5 0.0014 3E-08 67.1 13.5 100 422-521 66-167 (429)
179 PF12895 Apc3: Anaphase-promot 97.5 0.00022 4.8E-09 55.7 6.1 80 680-762 2-83 (84)
180 cd00189 TPR Tetratricopeptide 97.5 0.0015 3.3E-08 52.5 11.4 92 672-765 5-96 (100)
181 PRK10803 tol-pal system protei 97.5 0.0026 5.6E-08 61.5 13.9 102 703-806 144-251 (263)
182 PF08579 RPM2: Mitochondrial r 97.5 0.0014 3E-08 51.9 9.6 75 324-398 32-115 (120)
183 PF04840 Vps16_C: Vps16, C-ter 97.5 0.064 1.4E-06 53.6 23.9 80 358-447 183-262 (319)
184 PF05843 Suf: Suppressor of fo 97.5 0.0015 3.3E-08 64.4 12.5 144 599-747 3-150 (280)
185 COG4235 Cytochrome c biogenesi 97.5 0.0099 2.1E-07 56.7 16.9 105 700-807 154-262 (287)
186 COG4700 Uncharacterized protei 97.5 0.059 1.3E-06 47.0 19.8 155 629-798 86-241 (251)
187 KOG1130 Predicted G-alpha GTPa 97.5 0.0026 5.6E-08 62.2 13.2 131 669-799 197-342 (639)
188 PRK02603 photosystem I assembl 97.5 0.0082 1.8E-07 54.6 16.2 112 632-765 35-148 (172)
189 PF12688 TPR_5: Tetratrico pep 97.4 0.0067 1.5E-07 50.3 13.6 89 710-798 9-101 (120)
190 PRK15363 pathogenicity island 97.4 0.023 4.9E-07 49.0 17.0 91 638-730 41-131 (157)
191 PF07079 DUF1347: Protein of u 97.4 0.18 3.8E-06 50.8 45.8 453 222-742 17-530 (549)
192 KOG0550 Molecular chaperone (D 97.4 0.18 3.8E-06 50.2 26.1 87 609-696 261-350 (486)
193 KOG1923 Rac1 GTPase effector F 97.4 0.00052 1.1E-08 72.3 8.1 12 4-15 278-289 (830)
194 KOG1130 Predicted G-alpha GTPa 97.4 0.0041 8.8E-08 60.9 13.1 284 467-765 27-343 (639)
195 CHL00033 ycf3 photosystem I as 97.4 0.004 8.7E-08 56.4 12.9 94 668-763 36-139 (168)
196 PF13371 TPR_9: Tetratricopept 97.3 0.0011 2.4E-08 50.1 7.3 62 744-806 2-63 (73)
197 PF06239 ECSIT: Evolutionarily 97.3 0.0048 1E-07 55.6 12.0 33 264-296 120-152 (228)
198 PF06239 ECSIT: Evolutionarily 97.3 0.0044 9.6E-08 55.8 11.6 33 369-401 120-152 (228)
199 PRK10866 outer membrane biogen 97.3 0.052 1.1E-06 52.2 20.0 174 289-483 39-238 (243)
200 PRK10866 outer membrane biogen 97.3 0.06 1.3E-06 51.8 20.3 177 604-800 39-240 (243)
201 PF13281 DUF4071: Domain of un 97.2 0.06 1.3E-06 54.2 20.1 166 637-804 146-337 (374)
202 KOG2796 Uncharacterized conser 97.2 0.21 4.5E-06 46.4 22.0 135 634-769 179-318 (366)
203 COG4235 Cytochrome c biogenesi 97.1 0.024 5.3E-07 54.1 15.6 116 648-767 138-257 (287)
204 PF07079 DUF1347: Protein of u 97.1 0.38 8.2E-06 48.6 48.1 121 677-800 389-523 (549)
205 PRK15331 chaperone protein Sic 97.1 0.036 7.9E-07 48.0 14.9 92 708-801 43-134 (165)
206 KOG1538 Uncharacterized conser 97.1 0.026 5.5E-07 58.8 16.1 56 386-450 746-801 (1081)
207 PF12688 TPR_5: Tetratrico pep 97.1 0.044 9.5E-07 45.5 14.7 90 673-764 7-102 (120)
208 PF13525 YfiO: Outer membrane 97.0 0.14 3.1E-06 47.8 19.6 172 603-793 11-199 (203)
209 PF13414 TPR_11: TPR repeat; P 97.0 0.0036 7.8E-08 46.5 7.2 62 702-765 3-66 (69)
210 PF04840 Vps16_C: Vps16, C-ter 97.0 0.5 1.1E-05 47.3 28.6 103 392-514 182-284 (319)
211 PF13432 TPR_16: Tetratricopep 96.9 0.0036 7.9E-08 45.8 6.8 53 711-765 6-59 (65)
212 KOG2114 Vacuolar assembly/sort 96.9 0.75 1.6E-05 50.3 25.1 178 285-483 337-516 (933)
213 KOG2114 Vacuolar assembly/sort 96.9 0.26 5.5E-06 53.7 21.6 177 249-449 337-517 (933)
214 KOG0543 FKBP-type peptidyl-pro 96.8 0.019 4E-07 57.0 12.3 66 739-805 259-324 (397)
215 KOG1538 Uncharacterized conser 96.8 0.046 9.9E-07 57.0 15.5 101 491-626 746-846 (1081)
216 PF13525 YfiO: Outer membrane 96.8 0.1 2.2E-06 48.9 17.0 57 290-346 13-71 (203)
217 PF14559 TPR_19: Tetratricopep 96.8 0.0045 9.7E-08 45.9 6.3 51 714-765 3-53 (68)
218 KOG2796 Uncharacterized conser 96.8 0.055 1.2E-06 50.0 14.0 136 670-806 180-320 (366)
219 COG3898 Uncharacterized membra 96.7 0.7 1.5E-05 45.8 31.8 283 435-766 97-392 (531)
220 PRK10803 tol-pal system protei 96.7 0.038 8.3E-07 53.5 13.3 58 706-765 184-245 (263)
221 PF13424 TPR_12: Tetratricopep 96.7 0.0046 1E-07 47.3 5.8 62 739-800 7-74 (78)
222 COG3898 Uncharacterized membra 96.7 0.78 1.7E-05 45.4 31.5 283 469-802 96-393 (531)
223 PF13281 DUF4071: Domain of un 96.4 1.3 2.8E-05 45.0 23.2 167 598-766 142-334 (374)
224 PF10300 DUF3808: Protein of u 96.4 0.27 5.9E-06 52.6 18.6 166 634-803 190-378 (468)
225 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.3E-07 45.3 5.9 63 703-765 6-74 (78)
226 PF03704 BTAD: Bacterial trans 96.2 0.25 5.3E-06 43.4 14.7 66 707-773 67-137 (146)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.033 7.2E-07 56.7 9.9 98 700-803 73-176 (453)
228 KOG4555 TPR repeat-containing 96.1 0.11 2.3E-06 42.4 10.4 92 676-768 52-146 (175)
229 COG0457 NrfG FOG: TPR repeat [ 96.1 1.4 3.1E-05 42.4 29.5 196 606-804 68-268 (291)
230 PF13371 TPR_9: Tetratricopept 96.1 0.041 9E-07 41.3 8.1 25 741-765 33-57 (73)
231 COG1729 Uncharacterized protei 96.1 0.12 2.6E-06 48.9 12.4 102 704-808 144-251 (262)
232 PRK11906 transcriptional regul 96.0 0.46 9.9E-06 48.9 16.9 145 648-798 274-433 (458)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.068 1.5E-06 54.5 11.0 97 666-768 74-176 (453)
234 COG4105 ComL DNA uptake lipopr 96.0 1.5 3.2E-05 41.4 19.2 185 280-485 33-232 (254)
235 KOG1941 Acetylcholine receptor 96.0 0.65 1.4E-05 45.4 16.7 128 637-764 127-273 (518)
236 KOG0543 FKBP-type peptidyl-pro 95.9 0.11 2.4E-06 51.8 11.9 99 703-804 258-358 (397)
237 PF03704 BTAD: Bacterial trans 95.8 0.17 3.7E-06 44.4 12.0 60 739-799 64-123 (146)
238 PRK15331 chaperone protein Sic 95.8 0.27 5.8E-06 42.8 12.3 87 607-695 47-133 (165)
239 COG4649 Uncharacterized protei 95.8 1.2 2.6E-05 38.8 16.7 139 678-817 69-211 (221)
240 KOG1258 mRNA processing protei 95.7 3.4 7.4E-05 43.9 35.8 134 611-751 345-489 (577)
241 KOG1258 mRNA processing protei 95.7 3.4 7.4E-05 43.8 35.2 172 631-806 296-475 (577)
242 COG4105 ComL DNA uptake lipopr 95.5 2.3 5.1E-05 40.1 21.1 62 743-805 173-237 (254)
243 KOG4234 TPR repeat-containing 95.4 0.26 5.7E-06 43.7 10.7 94 711-806 104-202 (271)
244 PF13428 TPR_14: Tetratricopep 95.4 0.026 5.6E-07 37.2 3.7 33 774-806 3-35 (44)
245 KOG4555 TPR repeat-containing 95.3 0.34 7.3E-06 39.7 10.4 53 642-695 53-105 (175)
246 PF04184 ST7: ST7 protein; In 95.3 1.7 3.7E-05 44.9 17.7 101 706-807 263-381 (539)
247 PF13512 TPR_18: Tetratricopep 95.2 0.5 1.1E-05 40.1 11.7 18 788-805 115-132 (142)
248 KOG2280 Vacuolar assembly/sort 95.2 6 0.00013 43.1 37.0 87 358-447 443-532 (829)
249 smart00299 CLH Clathrin heavy 95.2 1.3 2.7E-05 38.5 15.0 85 636-728 11-95 (140)
250 COG3118 Thioredoxin domain-con 95.1 1.6 3.4E-05 42.0 15.8 141 641-786 143-286 (304)
251 PF12921 ATP13: Mitochondrial 95.1 0.33 7.2E-06 40.8 10.4 79 387-465 2-96 (126)
252 PRK11906 transcriptional regul 95.0 0.74 1.6E-05 47.4 14.5 123 682-807 273-407 (458)
253 COG1729 Uncharacterized protei 95.0 0.45 9.7E-06 45.1 12.1 98 141-240 145-244 (262)
254 PF12921 ATP13: Mitochondrial 95.0 0.4 8.8E-06 40.3 10.7 48 698-745 48-96 (126)
255 COG3118 Thioredoxin domain-con 95.0 3 6.6E-05 40.1 17.4 121 678-802 145-266 (304)
256 PF04053 Coatomer_WDAD: Coatom 95.0 0.6 1.3E-05 49.2 14.3 129 292-450 271-401 (443)
257 PF07719 TPR_2: Tetratricopept 95.0 0.057 1.2E-06 33.0 4.3 33 773-805 2-34 (34)
258 KOG3941 Intermediate in Toll s 95.0 0.26 5.6E-06 46.3 10.0 65 233-297 94-173 (406)
259 PF13428 TPR_14: Tetratricopep 94.9 0.071 1.5E-06 35.0 4.8 40 739-779 3-42 (44)
260 KOG1586 Protein required for f 94.9 3.1 6.7E-05 38.4 21.3 14 540-553 27-40 (288)
261 KOG3941 Intermediate in Toll s 94.9 0.26 5.5E-06 46.3 9.8 103 665-787 65-173 (406)
262 PF00515 TPR_1: Tetratricopept 94.9 0.046 1E-06 33.4 3.7 32 773-804 2-33 (34)
263 PF09205 DUF1955: Domain of un 94.9 1.8 3.9E-05 35.8 13.2 59 674-733 93-151 (161)
264 PF13512 TPR_18: Tetratricopep 94.9 0.42 9.1E-06 40.6 10.3 110 707-818 15-127 (142)
265 KOG1941 Acetylcholine receptor 94.8 4.5 9.8E-05 39.9 19.1 127 602-729 127-273 (518)
266 PF09205 DUF1955: Domain of un 94.8 1.9 4.2E-05 35.6 14.9 59 463-522 92-150 (161)
267 smart00299 CLH Clathrin heavy 94.8 2.2 4.8E-05 37.0 15.5 41 323-364 13-53 (140)
268 KOG2280 Vacuolar assembly/sort 94.7 7.9 0.00017 42.3 35.1 110 668-796 685-794 (829)
269 KOG1920 IkappaB kinase complex 94.7 11 0.00023 43.7 27.2 23 215-237 681-703 (1265)
270 KOG4648 Uncharacterized conser 94.7 0.12 2.6E-06 49.7 7.4 104 711-819 106-210 (536)
271 PF13170 DUF4003: Protein of u 94.7 5.1 0.00011 39.8 19.4 48 264-311 79-132 (297)
272 KOG2610 Uncharacterized conser 94.7 2 4.3E-05 41.8 15.2 152 609-764 115-274 (491)
273 PF08631 SPO22: Meiosis protei 94.5 5.5 0.00012 39.4 24.2 101 284-386 86-191 (278)
274 PF02259 FAT: FAT domain; Int 94.5 7 0.00015 40.5 22.7 65 666-730 145-212 (352)
275 PF10300 DUF3808: Protein of u 94.4 2.2 4.8E-05 45.8 17.2 118 610-730 246-375 (468)
276 COG2976 Uncharacterized protei 94.3 3.8 8.2E-05 36.8 15.4 106 708-817 95-202 (207)
277 KOG2610 Uncharacterized conser 94.2 1.2 2.5E-05 43.3 12.7 152 644-798 115-273 (491)
278 PF04053 Coatomer_WDAD: Coatom 94.1 1.4 3E-05 46.5 14.6 129 140-306 298-426 (443)
279 PF04184 ST7: ST7 protein; In 94.0 2 4.4E-05 44.4 14.7 161 644-818 180-342 (539)
280 PF13170 DUF4003: Protein of u 93.8 7.6 0.00017 38.6 21.9 130 333-464 78-224 (297)
281 PF08631 SPO22: Meiosis protei 93.8 7.7 0.00017 38.4 26.8 163 634-799 86-273 (278)
282 COG0457 NrfG FOG: TPR repeat [ 93.7 6.7 0.00015 37.5 33.0 164 600-766 98-265 (291)
283 KOG1585 Protein required for f 93.5 6.5 0.00014 36.6 18.0 23 495-517 94-116 (308)
284 PF13176 TPR_7: Tetratricopept 93.4 0.071 1.5E-06 33.1 2.3 25 775-799 2-26 (36)
285 COG3629 DnrI DNA-binding trans 93.2 0.88 1.9E-05 44.0 10.3 73 703-776 154-231 (280)
286 COG2909 MalT ATP-dependent tra 93.0 19 0.00041 40.6 25.6 194 608-804 426-650 (894)
287 PRK09687 putative lyase; Provi 93.0 10 0.00022 37.5 26.9 239 525-819 35-279 (280)
288 PHA03247 large tegument protei 92.9 0.49 1.1E-05 58.2 9.7 6 251-256 3113-3118(3151)
289 cd00923 Cyt_c_Oxidase_Va Cytoc 92.8 0.99 2.2E-05 34.9 7.8 61 757-818 27-87 (103)
290 KOG2391 Vacuolar sorting prote 92.7 4.1 8.8E-05 39.6 13.6 47 210-257 298-344 (365)
291 PF13431 TPR_17: Tetratricopep 92.7 0.17 3.7E-06 30.9 3.2 32 760-792 2-33 (34)
292 PF02284 COX5A: Cytochrome c o 92.4 1.2 2.5E-05 34.9 7.8 64 756-820 29-92 (108)
293 PF02259 FAT: FAT domain; Int 92.0 17 0.00036 37.7 26.0 66 631-696 145-213 (352)
294 PF13181 TPR_8: Tetratricopept 92.0 0.26 5.7E-06 30.0 3.5 31 774-804 3-33 (34)
295 KOG2066 Vacuolar assembly/sort 91.8 24 0.00052 39.1 26.8 102 394-504 363-467 (846)
296 PF13176 TPR_7: Tetratricopept 91.8 0.34 7.3E-06 30.1 3.9 26 739-764 1-26 (36)
297 PF09613 HrpB1_HrpK: Bacterial 91.8 8.3 0.00018 33.7 14.1 108 679-793 22-130 (160)
298 PF07035 Mic1: Colon cancer-as 91.7 9.2 0.0002 33.9 15.8 134 338-485 15-148 (167)
299 PF07035 Mic1: Colon cancer-as 91.4 9.7 0.00021 33.8 16.0 135 267-415 14-148 (167)
300 COG1747 Uncharacterized N-term 91.3 21 0.00045 37.4 25.7 164 281-451 65-234 (711)
301 COG2909 MalT ATP-dependent tra 91.2 30 0.00066 39.0 27.5 170 628-797 493-684 (894)
302 PF10602 RPN7: 26S proteasome 91.2 4.2 9.1E-05 36.9 11.7 95 703-799 37-140 (177)
303 KOG1920 IkappaB kinase complex 90.7 40 0.00086 39.5 29.6 157 366-553 894-1052(1265)
304 TIGR03504 FimV_Cterm FimV C-te 90.7 0.39 8.4E-06 31.3 3.3 26 777-802 4-29 (44)
305 KOG2066 Vacuolar assembly/sort 90.6 32 0.00069 38.2 27.3 70 186-259 366-436 (846)
306 KOG3364 Membrane protein invol 90.5 8.9 0.00019 32.1 11.5 84 734-819 29-116 (149)
307 PF10602 RPN7: 26S proteasome 90.4 4.8 0.0001 36.5 11.4 61 634-694 38-100 (177)
308 COG2976 Uncharacterized protei 90.4 13 0.00029 33.5 14.0 93 673-767 95-189 (207)
309 KOG1585 Protein required for f 90.4 16 0.00034 34.3 17.4 196 599-798 33-253 (308)
310 PF13174 TPR_6: Tetratricopept 90.3 0.42 9.1E-06 28.7 3.3 30 775-804 3-32 (33)
311 KOG4234 TPR repeat-containing 90.3 10 0.00023 34.1 12.6 88 677-766 105-197 (271)
312 PF14853 Fis1_TPR_C: Fis1 C-te 90.3 1.9 4.2E-05 29.5 6.5 44 775-820 4-47 (53)
313 COG3629 DnrI DNA-binding trans 90.2 3.5 7.5E-05 40.0 10.6 79 667-746 153-236 (280)
314 PF10345 Cohesin_load: Cohesin 89.9 39 0.00084 38.1 42.7 27 212-238 60-87 (608)
315 COG0790 FOG: TPR repeat, SEL1 89.8 23 0.0005 35.4 24.7 188 611-811 55-276 (292)
316 KOG2063 Vacuolar assembly/sort 89.5 45 0.00098 38.4 23.9 39 712-750 694-745 (877)
317 PF09613 HrpB1_HrpK: Bacterial 89.5 14 0.00029 32.4 12.6 97 704-804 9-109 (160)
318 PF07163 Pex26: Pex26 protein; 89.4 11 0.00023 36.2 12.7 85 709-795 90-181 (309)
319 PF04097 Nic96: Nup93/Nic96; 89.3 42 0.00092 37.7 20.4 88 324-416 265-356 (613)
320 PF00637 Clathrin: Region in C 89.1 0.014 3E-07 51.2 -5.9 129 638-788 13-141 (143)
321 COG4785 NlpI Lipoprotein NlpI, 88.9 19 0.0004 33.1 14.3 83 150-238 78-160 (297)
322 KOG4849 mRNA cleavage factor I 88.9 6.5 0.00014 38.1 11.1 11 150-160 386-396 (498)
323 PF09986 DUF2225: Uncharacteri 88.7 7.5 0.00016 36.5 11.6 107 712-821 87-211 (214)
324 PF13431 TPR_17: Tetratricopep 88.3 0.66 1.4E-05 28.3 3.0 19 703-721 14-32 (34)
325 PF00515 TPR_1: Tetratricopept 88.3 1.2 2.6E-05 27.0 4.2 24 741-764 5-28 (34)
326 COG4785 NlpI Lipoprotein NlpI, 88.1 21 0.00046 32.8 16.6 180 610-802 78-267 (297)
327 PF06552 TOM20_plant: Plant sp 87.9 4.2 9.1E-05 36.1 8.6 95 683-782 7-123 (186)
328 PF07719 TPR_2: Tetratricopept 87.7 1.1 2.5E-05 27.0 3.9 27 739-765 3-29 (34)
329 PRK15180 Vi polysaccharide bio 87.5 5.7 0.00012 40.7 10.3 122 643-768 300-422 (831)
330 COG4649 Uncharacterized protei 87.3 20 0.00043 31.6 16.1 122 644-765 70-195 (221)
331 PF07575 Nucleopor_Nup85: Nup8 86.8 46 0.001 37.1 18.4 25 211-236 149-173 (566)
332 KOG0276 Vesicle coat complex C 86.8 10 0.00022 40.3 11.9 102 184-307 645-746 (794)
333 KOG1925 Rac1 GTPase effector F 86.7 1.2 2.6E-05 45.2 5.2 10 354-363 472-481 (817)
334 PF07575 Nucleopor_Nup85: Nup8 86.6 23 0.0005 39.4 15.9 26 352-378 149-174 (566)
335 PF06552 TOM20_plant: Plant sp 86.5 15 0.00032 32.8 11.1 28 718-747 96-123 (186)
336 KOG2062 26S proteasome regulat 86.5 58 0.0012 36.0 38.9 121 641-765 510-634 (929)
337 KOG4570 Uncharacterized conser 86.1 11 0.00025 36.5 10.9 103 277-381 59-164 (418)
338 COG5178 PRP8 U5 snRNP spliceos 86.0 0.67 1.5E-05 52.0 3.4 8 214-221 477-484 (2365)
339 PRK15180 Vi polysaccharide bio 85.7 48 0.001 34.4 32.0 120 364-487 301-421 (831)
340 PF10345 Cohesin_load: Cohesin 85.6 69 0.0015 36.1 45.6 195 244-449 28-252 (608)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 85.5 5.5 0.00012 31.0 7.0 44 721-764 26-69 (103)
342 COG4455 ImpE Protein of avirul 85.4 3.6 7.7E-05 37.5 7.0 77 704-781 3-81 (273)
343 KOG0276 Vesicle coat complex C 85.3 10 0.00022 40.3 11.1 99 294-413 649-747 (794)
344 PF13374 TPR_10: Tetratricopep 85.3 1.8 3.9E-05 27.6 4.1 29 773-801 3-31 (42)
345 KOG4570 Uncharacterized conser 84.2 9.4 0.0002 37.0 9.5 102 417-520 59-163 (418)
346 KOG1550 Extracellular protein 84.2 74 0.0016 35.3 27.1 153 292-453 259-428 (552)
347 KOG1550 Extracellular protein 84.0 75 0.0016 35.3 27.5 46 367-415 227-277 (552)
348 smart00028 TPR Tetratricopepti 83.9 2.1 4.6E-05 24.9 3.8 31 774-804 3-33 (34)
349 COG5159 RPN6 26S proteasome re 83.7 43 0.00093 32.2 14.5 34 427-460 130-167 (421)
350 COG3947 Response regulator con 83.5 45 0.00098 32.3 16.1 42 193-236 150-191 (361)
351 KOG4077 Cytochrome c oxidase, 83.3 8.4 0.00018 31.6 7.5 41 724-764 71-111 (149)
352 COG1747 Uncharacterized N-term 83.1 66 0.0014 33.9 26.7 162 613-782 82-249 (711)
353 KOG0890 Protein kinase of the 83.1 1.5E+02 0.0033 38.1 36.0 61 668-731 1671-1731(2382)
354 PF13374 TPR_10: Tetratricopep 83.0 3.1 6.8E-05 26.5 4.5 27 704-730 4-30 (42)
355 PF11207 DUF2989: Protein of u 81.9 14 0.0003 33.8 9.2 75 719-794 123-200 (203)
356 PF02284 COX5A: Cytochrome c o 81.5 25 0.00054 27.9 9.4 60 265-325 28-87 (108)
357 PF11207 DUF2989: Protein of u 81.4 14 0.0003 33.7 9.1 42 715-756 153-197 (203)
358 KOG4648 Uncharacterized conser 81.3 9.2 0.0002 37.5 8.4 93 640-736 105-197 (536)
359 KOG4642 Chaperone-dependent E3 80.2 15 0.00032 34.4 8.8 116 677-796 20-141 (284)
360 KOG0403 Neoplastic transformat 80.1 77 0.0017 32.7 29.8 73 671-748 513-585 (645)
361 PF07721 TPR_4: Tetratricopept 79.5 2.7 5.8E-05 23.6 2.7 22 775-796 4-25 (26)
362 KOG4507 Uncharacterized conser 79.0 7.2 0.00016 41.2 7.3 92 714-808 619-712 (886)
363 PHA02537 M terminase endonucle 78.9 59 0.0013 30.7 12.8 49 773-821 170-228 (230)
364 KOG0545 Aryl-hydrocarbon recep 78.5 60 0.0013 30.6 12.1 69 740-809 233-301 (329)
365 PRK11619 lytic murein transgly 78.5 1.2E+02 0.0027 34.2 31.2 117 645-764 254-373 (644)
366 PF04910 Tcf25: Transcriptiona 77.5 92 0.002 32.2 17.1 169 642-817 4-234 (360)
367 PF08424 NRDE-2: NRDE-2, neces 77.4 87 0.0019 31.8 18.0 119 648-768 47-185 (321)
368 KOG2297 Predicted translation 77.3 75 0.0016 31.0 20.7 222 210-477 110-341 (412)
369 PF14561 TPR_20: Tetratricopep 76.9 18 0.00038 28.3 7.5 52 736-787 21-73 (90)
370 PF13181 TPR_8: Tetratricopept 76.7 6.3 0.00014 23.6 4.1 27 739-765 3-29 (34)
371 KOG4849 mRNA cleavage factor I 75.8 10 0.00022 36.8 6.9 8 189-196 386-393 (498)
372 KOG4507 Uncharacterized conser 75.2 18 0.00039 38.4 8.9 152 560-713 569-721 (886)
373 KOG1586 Protein required for f 75.0 74 0.0016 29.9 21.0 18 294-311 166-183 (288)
374 PF03276 Gag_spuma: Spumavirus 74.9 59 0.0013 34.5 12.4 12 189-200 375-386 (582)
375 PRK09687 putative lyase; Provi 74.3 95 0.0021 30.7 29.5 224 489-765 34-262 (280)
376 PRK10941 hypothetical protein; 74.1 36 0.00078 33.3 10.4 77 740-817 184-261 (269)
377 PF04097 Nic96: Nup93/Nic96; 73.8 1.6E+02 0.0035 33.2 25.2 224 212-451 113-356 (613)
378 KOG2297 Predicted translation 72.9 99 0.0021 30.3 20.5 19 563-581 322-340 (412)
379 COG4455 ImpE Protein of avirul 72.9 44 0.00095 30.9 9.7 77 669-746 3-81 (273)
380 PF00637 Clathrin: Region in C 72.8 1.3 2.9E-05 38.5 0.5 86 672-764 12-97 (143)
381 KOG4642 Chaperone-dependent E3 72.8 78 0.0017 29.9 11.3 118 642-763 20-143 (284)
382 KOG2396 HAT (Half-A-TPR) repea 72.7 1.3E+02 0.0029 31.8 39.8 97 665-764 457-557 (568)
383 PF10579 Rapsyn_N: Rapsyn N-te 71.7 13 0.00028 27.9 5.1 19 705-723 46-64 (80)
384 KOG2396 HAT (Half-A-TPR) repea 71.4 1.4E+02 0.0031 31.6 41.7 80 155-240 89-169 (568)
385 PF13174 TPR_6: Tetratricopept 71.4 5.9 0.00013 23.4 3.0 23 743-765 6-28 (33)
386 KOG2659 LisH motif-containing 71.1 82 0.0018 29.5 11.2 22 708-729 70-91 (228)
387 KOG0307 Vesicle coat complex C 70.3 2.3E+02 0.0049 33.4 19.8 42 197-238 983-1024(1049)
388 COG3947 Response regulator con 68.3 1.2E+02 0.0027 29.5 15.8 53 465-518 287-339 (361)
389 KOG1464 COP9 signalosome, subu 68.3 1.1E+02 0.0025 29.2 19.5 275 487-799 21-330 (440)
390 KOG0890 Protein kinase of the 68.2 3.7E+02 0.008 35.0 33.7 63 737-802 1670-1732(2382)
391 KOG3364 Membrane protein invol 68.1 72 0.0016 27.1 9.1 23 743-765 77-99 (149)
392 TIGR03504 FimV_Cterm FimV C-te 67.8 12 0.00026 24.5 3.8 23 743-765 5-27 (44)
393 KOG0292 Vesicle coat complex C 67.7 2.3E+02 0.005 32.5 23.1 102 713-814 1002-1126(1202)
394 PF11846 DUF3366: Domain of un 67.3 29 0.00062 32.1 8.1 47 756-804 130-176 (193)
395 TIGR02561 HrpB1_HrpK type III 66.8 86 0.0019 27.2 13.1 19 712-730 54-72 (153)
396 TIGR02561 HrpB1_HrpK type III 66.2 88 0.0019 27.1 12.1 53 713-767 21-74 (153)
397 PF10579 Rapsyn_N: Rapsyn N-te 65.6 16 0.00034 27.4 4.5 47 749-795 18-66 (80)
398 TIGR02508 type_III_yscG type I 65.6 56 0.0012 25.9 7.5 15 363-377 50-64 (115)
399 PF09986 DUF2225: Uncharacteri 65.5 1.2E+02 0.0027 28.5 12.1 89 643-731 88-194 (214)
400 KOG0376 Serine-threonine phosp 65.3 12 0.00027 38.7 5.4 89 713-805 15-105 (476)
401 KOG2908 26S proteasome regulat 65.3 81 0.0018 31.4 10.4 55 676-730 84-143 (380)
402 COG0790 FOG: TPR repeat, SEL1 65.1 1.5E+02 0.0033 29.5 24.6 118 646-770 127-270 (292)
403 PF04625 DEC-1_N: DEC-1 protei 64.4 15 0.00032 35.3 5.3 6 269-274 301-306 (407)
404 PF08424 NRDE-2: NRDE-2, neces 64.0 1.7E+02 0.0037 29.7 18.5 118 683-803 47-185 (321)
405 PRK14954 DNA polymerase III su 63.7 29 0.00062 38.7 8.3 13 179-191 509-521 (620)
406 COG5187 RPN7 26S proteasome re 63.3 1.5E+02 0.0033 28.8 13.6 27 387-413 115-141 (412)
407 KOG1464 COP9 signalosome, subu 63.2 1.4E+02 0.0031 28.5 25.6 213 451-694 20-258 (440)
408 PHA02875 ankyrin repeat protei 63.2 2.1E+02 0.0045 30.4 15.7 16 291-306 74-89 (413)
409 KOG0307 Vesicle coat complex C 63.0 62 0.0013 37.6 10.5 41 269-309 984-1024(1049)
410 PRK11619 lytic murein transgly 62.3 2.8E+02 0.006 31.5 40.2 117 435-554 254-373 (644)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 62.0 57 0.0012 27.5 8.1 45 754-798 80-125 (126)
412 PF07163 Pex26: Pex26 protein; 62.0 1.1E+02 0.0023 29.8 10.3 52 674-725 125-181 (309)
413 KOG0687 26S proteasome regulat 61.9 1.7E+02 0.0038 29.0 15.5 64 389-452 106-174 (393)
414 KOG4077 Cytochrome c oxidase, 60.9 52 0.0011 27.3 7.0 47 684-730 66-112 (149)
415 KOG0292 Vesicle coat complex C 59.9 3.2E+02 0.0069 31.4 20.7 159 321-521 624-782 (1202)
416 PF12862 Apc5: Anaphase-promot 59.8 57 0.0012 25.7 7.3 53 713-765 9-69 (94)
417 COG4976 Predicted methyltransf 59.6 17 0.00037 33.7 4.6 56 749-805 7-62 (287)
418 KOG2471 TPR repeat-containing 59.5 2.4E+02 0.0052 29.9 20.0 109 675-785 248-382 (696)
419 PF14669 Asp_Glu_race_2: Putat 59.0 1.4E+02 0.0031 27.1 14.3 56 496-551 136-205 (233)
420 COG5187 RPN7 26S proteasome re 58.8 1.8E+02 0.004 28.3 14.3 97 421-519 114-219 (412)
421 KOG1029 Endocytic adaptor prot 58.8 29 0.00062 38.2 6.8 6 3-8 84-89 (1118)
422 KOG2063 Vacuolar assembly/sort 58.7 3.6E+02 0.0077 31.6 24.6 39 536-574 600-638 (877)
423 KOG4279 Serine/threonine prote 57.0 1.3E+02 0.0029 33.4 11.2 183 617-804 183-398 (1226)
424 PF10366 Vps39_1: Vacuolar sor 56.6 63 0.0014 26.4 7.1 26 740-765 42-67 (108)
425 KOG2391 Vacuolar sorting prote 56.4 2.2E+02 0.0047 28.4 16.4 32 245-277 298-329 (365)
426 KOG3824 Huntingtin interacting 55.3 65 0.0014 31.4 7.8 58 749-807 128-185 (472)
427 PF12862 Apc5: Anaphase-promot 55.0 69 0.0015 25.2 7.1 21 710-730 49-69 (94)
428 PF07174 FAP: Fibronectin-atta 54.7 1E+02 0.0022 29.4 8.7 7 212-218 236-242 (297)
429 PF11838 ERAP1_C: ERAP1-like C 53.9 1.8E+02 0.004 29.4 12.1 171 648-821 146-324 (324)
430 cd00280 TRFH Telomeric Repeat 53.9 73 0.0016 28.6 7.3 76 192-270 85-167 (200)
431 KOG0991 Replication factor C, 53.8 2E+02 0.0043 27.2 16.2 20 751-770 252-271 (333)
432 PRK08691 DNA polymerase III su 53.8 3E+02 0.0064 31.3 13.7 86 683-771 180-279 (709)
433 PF14689 SPOB_a: Sensor_kinase 53.6 62 0.0013 23.1 5.9 43 753-800 9-51 (62)
434 KOG2581 26S proteasome regulat 53.4 2.8E+02 0.006 28.7 12.3 139 666-804 125-279 (493)
435 PRK07003 DNA polymerase III su 53.4 4.1E+02 0.0088 30.7 15.4 47 648-696 180-227 (830)
436 KOG4307 RNA binding protein RB 53.2 51 0.0011 35.9 7.4 7 754-760 920-926 (944)
437 cd08819 CARD_MDA5_2 Caspase ac 51.9 1.1E+02 0.0023 23.7 7.0 34 400-438 49-82 (88)
438 PHA02875 ankyrin repeat protei 51.8 3.2E+02 0.0069 29.0 15.3 83 323-410 71-155 (413)
439 PF13929 mRNA_stabil: mRNA sta 51.6 2.5E+02 0.0054 27.7 22.1 63 418-480 198-261 (292)
440 cd08819 CARD_MDA5_2 Caspase ac 51.5 1.1E+02 0.0024 23.6 7.3 66 406-477 21-86 (88)
441 PRK07003 DNA polymerase III su 51.3 3E+02 0.0065 31.7 13.2 85 683-770 180-278 (830)
442 KOG0128 RNA-binding protein SA 51.3 4.3E+02 0.0092 30.3 36.7 56 644-700 474-530 (881)
443 KOG2034 Vacuolar sorting prote 51.2 4.4E+02 0.0096 30.4 31.5 265 138-439 359-645 (911)
444 PF07720 TPR_3: Tetratricopept 51.1 47 0.001 20.6 4.3 19 776-794 5-23 (36)
445 PF14853 Fis1_TPR_C: Fis1 C-te 51.1 52 0.0011 22.6 4.9 20 711-730 10-29 (53)
446 COG4941 Predicted RNA polymera 51.0 2.6E+02 0.0056 28.1 11.1 119 683-806 272-399 (415)
447 KOG0128 RNA-binding protein SA 51.0 4.3E+02 0.0093 30.2 38.2 88 648-736 442-531 (881)
448 PF14689 SPOB_a: Sensor_kinase 50.9 36 0.00078 24.3 4.3 50 714-765 2-51 (62)
449 KOG0551 Hsp90 co-chaperone CNS 49.8 65 0.0014 32.0 7.0 95 709-804 88-185 (390)
450 PF07304 SRA1: Steroid recepto 49.7 5.5 0.00012 35.1 0.0 38 5-42 1-38 (157)
451 PF15195 TMEM210: TMEM210 fami 49.7 13 0.00028 28.3 1.9 18 27-44 99-116 (116)
452 KOG2236 Uncharacterized conser 49.6 32 0.00069 35.4 5.2 55 5-59 420-482 (483)
453 KOG0566 Inositol-1,4,5-triphos 49.5 1E+02 0.0022 35.3 9.3 88 4-91 975-1080(1080)
454 PF05518 Totivirus_coat: Totiv 49.4 79 0.0017 35.3 8.4 81 1-81 678-759 (759)
455 KOG0905 Phosphoinositide 3-kin 49.1 74 0.0016 37.4 8.3 106 3-108 126-240 (1639)
456 PF12238 MSA-2c: Merozoite sur 49.0 64 0.0014 29.6 6.5 59 4-62 139-198 (205)
457 PF04625 DEC-1_N: DEC-1 protei 49.0 33 0.00071 33.1 4.8 43 1-44 99-141 (407)
458 KOG3397 Acetyltransferases [Ge 48.8 26 0.00057 30.5 3.8 45 13-57 164-208 (225)
459 PF13762 MNE1: Mitochondrial s 48.7 1.8E+02 0.0039 25.2 10.7 99 266-364 21-127 (145)
460 PF13762 MNE1: Mitochondrial s 48.6 1.8E+02 0.0039 25.2 9.0 84 211-294 39-127 (145)
461 KOG1308 Hsp70-interacting prot 48.6 19 0.00042 35.6 3.4 116 680-800 127-243 (377)
462 KOG2677 Stoned B synaptic vesi 48.2 29 0.00062 37.2 4.7 45 3-47 78-122 (922)
463 KOG0566 Inositol-1,4,5-triphos 48.2 90 0.002 35.7 8.6 99 2-100 954-1053(1080)
464 KOG0991 Replication factor C, 48.2 2.5E+02 0.0053 26.6 13.2 137 598-743 131-279 (333)
465 PF04190 DUF410: Protein of un 48.2 2.7E+02 0.006 27.2 18.0 191 188-412 2-216 (260)
466 PF06484 Ten_N: Teneurin Intra 47.9 1.3E+02 0.0028 29.8 8.6 102 3-104 167-317 (370)
467 smart00386 HAT HAT (Half-A-TPR 47.6 39 0.00085 19.5 3.7 33 786-819 1-33 (33)
468 PRK14963 DNA polymerase III su 47.2 4.2E+02 0.0091 29.0 13.6 101 717-821 176-289 (504)
469 PLN00034 mitogen-activated pro 47.1 73 0.0016 32.9 7.9 72 1-72 1-72 (353)
470 PF07174 FAP: Fibronectin-atta 46.7 1E+02 0.0023 29.4 7.6 65 2-66 40-104 (297)
471 cd00280 TRFH Telomeric Repeat 46.6 1.3E+02 0.0029 27.1 7.8 66 753-820 85-157 (200)
472 PRK12270 kgd alpha-ketoglutara 46.3 75 0.0016 36.9 7.8 74 2-75 40-113 (1228)
473 PF04190 DUF410: Protein of un 46.2 2.9E+02 0.0064 27.0 18.7 191 433-657 1-216 (260)
474 KOG3397 Acetyltransferases [Ge 46.2 21 0.00046 31.0 2.9 33 9-41 164-196 (225)
475 KOG0686 COP9 signalosome, subu 46.0 3.6E+02 0.0079 27.9 14.9 180 212-395 151-352 (466)
476 PLN02983 biotin carboxyl carri 45.8 37 0.00081 32.4 4.7 51 10-60 155-205 (274)
477 PF11848 DUF3368: Domain of un 45.2 86 0.0019 20.9 5.2 38 217-254 8-45 (48)
478 KOG1451 Oligophrenin-1 and rel 44.9 1.3E+02 0.0027 32.4 8.6 99 3-101 564-671 (812)
479 KOG2471 TPR repeat-containing 44.5 4.2E+02 0.0091 28.2 24.8 503 274-797 9-680 (696)
480 PF06957 COPI_C: Coatomer (COP 43.9 1.1E+02 0.0023 32.1 8.1 123 677-816 214-344 (422)
481 PF09670 Cas_Cas02710: CRISPR- 43.9 2.6E+02 0.0057 29.2 11.2 126 324-450 138-269 (379)
482 PRK10941 hypothetical protein; 43.8 2.9E+02 0.0063 27.1 10.6 83 704-788 183-267 (269)
483 PF01698 FLO_LFY: Floricaula / 43.0 8 0.00017 38.7 0.0 29 3-31 17-45 (386)
484 PF15297 CKAP2_C: Cytoskeleton 42.7 1.3E+02 0.0028 30.3 8.0 67 719-787 120-190 (353)
485 PF11848 DUF3368: Domain of un 42.4 98 0.0021 20.7 5.1 38 393-430 8-45 (48)
486 PHA02940 hypothetical protein; 42.4 3E+02 0.0065 26.0 13.3 159 654-822 47-219 (315)
487 PF00244 14-3-3: 14-3-3 protei 42.4 3.2E+02 0.0069 26.2 15.0 202 603-821 7-225 (236)
488 PF09670 Cas_Cas02710: CRISPR- 42.3 2.8E+02 0.006 29.0 11.0 126 639-765 138-269 (379)
489 KOG3807 Predicted membrane pro 42.2 3.4E+02 0.0073 27.1 10.4 125 227-365 232-359 (556)
490 PF04834 Adeno_E3_14_5: Early 41.7 37 0.00081 26.5 3.3 29 1-29 57-85 (97)
491 COG2178 Predicted RNA-binding 41.6 2.8E+02 0.0061 25.4 11.0 124 248-380 4-149 (204)
492 PLN02983 biotin carboxyl carri 41.3 46 0.001 31.8 4.6 41 7-47 155-195 (274)
493 PF00244 14-3-3: 14-3-3 protei 41.3 1E+02 0.0022 29.6 7.1 83 740-822 4-87 (236)
494 KOG1029 Endocytic adaptor prot 41.1 53 0.0012 36.3 5.5 61 3-64 113-177 (1118)
495 KOG2546 Abl interactor ABI-1, 41.0 63 0.0014 33.0 5.6 70 3-72 335-421 (483)
496 KOG0530 Protein farnesyltransf 40.9 3.5E+02 0.0075 26.2 22.2 238 562-803 43-300 (318)
497 KOG0485 Transcription factor N 40.8 70 0.0015 29.1 5.3 62 3-64 181-246 (268)
498 PHA03417 E4 protein; Provision 40.7 24 0.00053 28.8 2.3 19 6-24 37-55 (118)
499 KOG0403 Neoplastic transformat 40.6 4.6E+02 0.0099 27.6 26.4 458 322-802 55-573 (645)
500 PRK13342 recombination factor 40.4 4.8E+02 0.01 27.7 19.4 168 614-800 154-333 (413)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.8e-81 Score=723.13 Aligned_cols=635 Identities=19% Similarity=0.266 Sum_probs=605.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHH
Q 003397 138 IDLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSI 217 (823)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 217 (823)
..+..+++.+...+....|..++..+...+. ..+..+++.++..|++.|+++.|.++|+.|.. +|..+||.+
T Consensus 87 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~l 158 (857)
T PLN03077 87 DAYVALFRLCEWKRAVEEGSRVCSRALSSHP----SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVL 158 (857)
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC----CCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHH
Confidence 3456788888899999999999999987543 25778999999999999999999999999985 488999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003397 218 LHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGL 297 (823)
Q Consensus 218 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 297 (823)
|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+. ++.+.+++.+|.+.|+.+|..+|+.||.+|++.|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD-LARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc-hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999887 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003397 298 LNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDT 377 (823)
Q Consensus 298 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (823)
+++|.++|++|. .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.++++.|+.+.|.+++..
T Consensus 238 ~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999997 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCh
Q 003397 378 MSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNR 457 (823)
Q Consensus 378 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 457 (823)
|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. +|..+||.+|.+|++.|++++|+++|++|.+.|+.||.
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999964 68999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003397 458 ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNAL 537 (823)
Q Consensus 458 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 537 (823)
.||+.++.+|++.|+.+.+.++++.|.+.|+.++..+|+.||++|++.|++++|.++|++|.+ +|..+|+.+|.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 5888999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHH
Q 003397 538 ARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGME 617 (823)
Q Consensus 538 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 617 (823)
++.|+.++|..+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+...+..++...++.++..|.++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-Hc
Q 003397 618 RAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGIL-KS 696 (823)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 696 (823)
++|+.+ .+|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999987 469999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHH
Q 003397 697 GGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTY 775 (823)
Q Consensus 697 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 775 (823)
|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+. .| +...|
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y 694 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYY 694 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchH
Confidence 999999999999999999999999999999984 7899999999999999999999999999999884 55 57778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 776 KIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
..|.+.|...|+|++|.++.+.|.+.+-.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 89999999999999999999999876544
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-80 Score=716.80 Aligned_cols=639 Identities=21% Similarity=0.269 Sum_probs=613.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHH
Q 003397 139 DLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSIL 218 (823)
Q Consensus 139 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 218 (823)
..+.+++.+.+.|++++|+.+|+.|...+. .++..+|..++..|.+.+.+..+..++..+...+..++..++|.++
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESMQELRV----PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 356788999999999999999999987532 3578889999999999999999999999999888888999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003397 219 HAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLL 298 (823)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 298 (823)
.+|++.|+++.|+++|++|. .+|..+||++|.+|++.|+ +++|.++|++|...|+.||..||+.++++|+..+++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~-~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGY-FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999997 4799999999999999998 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003397 299 NEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTM 378 (823)
Q Consensus 299 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (823)
+.+.+++..|.+.|+.|+..+||+||.+|++.|++++|.++|++|.. +|..+||.+|.+|++.|++++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999974 68899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChh
Q 003397 379 SSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRI 458 (823)
Q Consensus 379 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 458 (823)
.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.. ||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 6899
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003397 459 TWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALA 538 (823)
Q Consensus 459 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 538 (823)
+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHH
Q 003397 539 RRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMER 618 (823)
Q Consensus 539 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 618 (823)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+++++.. +..|+...+..++..+.+.|+++.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999965 5888999999999999999999999999976 488999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 003397 619 AFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGG 698 (823)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 698 (823)
++..+.+.|+.+|..++++++++|++.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003397 699 TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMT-NRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKI 777 (823)
Q Consensus 699 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 777 (823)
.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. ++||..+|.+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999999 58999999999999999999999999999999984 7899999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 778 VVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 778 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
|+.+|...|+.+.|....+++.+..|++..
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999998643
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-69 Score=605.22 Aligned_cols=547 Identities=16% Similarity=0.261 Sum_probs=452.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003397 208 SLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGL-SPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCS 286 (823)
Q Consensus 208 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 286 (823)
..+...|..++..|++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|. .++|..+++.|.. |+..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~-~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA-VKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC-HHHHHHHHHHcCC----CCHHHHH
Confidence 45778888899999999999999999999998885 4677778888888888887 7899999988874 8999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 003397 287 TVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAG 366 (823)
Q Consensus 287 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (823)
.++.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003397 367 FYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKE--SGCAPNVCTYNAVLGMLGKKGRSEEMMKI 444 (823)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 444 (823)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 57889999999999999999999999999
Q ss_pred HHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003397 445 LCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFT 524 (823)
Q Consensus 445 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 524 (823)
|+.|.+.|+.|+..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHH
Q 003397 525 PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLI 604 (823)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 604 (823)
|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|...+..|+...+..++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998999999999999999998888777776666665555555555555555
Q ss_pred HHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 003397 605 LVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCW 684 (823)
Q Consensus 605 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 684 (823)
..+.+.|++++|.++|++|.+.|+.||..+|++++.+|. +++++|.++.+.+..... ...+...+..+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHH
Confidence 555555555566666666666666666666666654433 134444443333221100 00011112345
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 685 KAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 685 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..++++|...+..|+..+|+.|++++++. .++|..++++|.
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 688888888888888888888888888778888888888888887777788888888888887432 367888888888
Q ss_pred hCCCCCCHH
Q 003397 765 QHNCKPNEL 773 (823)
Q Consensus 765 ~~~~~p~~~ 773 (823)
+.|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 888888753
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-68 Score=599.37 Aligned_cols=546 Identities=18% Similarity=0.286 Sum_probs=496.3
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHhhcccCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003397 174 LDKEVIQLMVRILGKESRHSIASKLLDLIPLEKY-SLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVM 252 (823)
Q Consensus 174 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 252 (823)
.+...+..++..|.+.|++++|.++|+.|.+.|+ .++..+++.++.+|.+.|.+++|+.+|+.|.+ ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4566777888888899999999999999999885 46778888899999999999999999998864 899999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 003397 253 LDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGV 332 (823)
Q Consensus 253 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 332 (823)
|.+|++.|+ ++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 444 L~a~~k~g~-~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQD-IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999998 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003397 333 YSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSS--KGLMPNAVTYTTLIDAYGRAGKVNKALRLL 410 (823)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 410 (823)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 678999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 003397 411 NKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEP 490 (823)
Q Consensus 411 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 490 (823)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+.++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003397 491 DRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLN 570 (823)
Q Consensus 491 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 570 (823)
+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 003397 571 CYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDR 650 (823)
Q Consensus 571 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 650 (823)
+|++.|+++.|.+++..+...++.|+...++.++..+. +.++++..+.+.+.. |+. .......+..++
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~---------f~~-g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS---------FDS-GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh---------hhc-cccccccchHHH
Confidence 99999999999999999999999999999988875533 245555544433322 110 111122344577
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 651 ANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 651 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
|..+|++|++.|+.||..+|+.++.++++.+....+..++++|...+..++..+|+++|+++++. .++|..+|++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999988889999999999999998888889999999999998543 4789999999999
Q ss_pred cCCCCCHH
Q 003397 731 RGIRPCIF 738 (823)
Q Consensus 731 ~~~~p~~~ 738 (823)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-62 Score=547.56 Aligned_cols=510 Identities=19% Similarity=0.319 Sum_probs=432.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHH
Q 003397 139 DLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSIL 218 (823)
Q Consensus 139 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 218 (823)
.+..++..+.+.|++++|+++|+||....++ .++..+|+.++.+|++.++++.+..++..+...|+.+|..+|+.++
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~---~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPF---TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 4567889999999999999999999875432 3688999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003397 219 HAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLL 298 (823)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 298 (823)
.+|++.|++++|.++|++|. .||.++||++|.+|++.|+ +++|.++|++|.+.|+.|+..+|+.++.+|++.|+.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~-~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGN-YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcC-HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999996 4799999999999999998 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003397 299 NEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTM 378 (823)
Q Consensus 299 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (823)
+.+.+++..+.+.|+.+|..+|++||.+|++.|++++|.++|++|.. +|..+||.+|.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 58899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChh
Q 003397 379 SSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRI 458 (823)
Q Consensus 379 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 458 (823)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ +|..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 6889
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 003397 459 TWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMK-TGFTPCVTTYNAFLNAL 537 (823)
Q Consensus 459 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 537 (823)
+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 58888999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHH
Q 003397 538 ARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGME 617 (823)
Q Consensus 538 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 617 (823)
++.|++++|.+++++| ++.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~---------------------------------------------------------- 491 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFK---------------------------------------------------------- 491 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCC----------------------------------------------------------
Confidence 9999998888877654 233
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 003397 618 RAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSG 697 (823)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 697 (823)
|+..+|++++.+|...|+++.|..+++++.+.++. +..+|..|+++|++.|++++|.+++++|.+.|
T Consensus 492 ------------p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 492 ------------PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred ------------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 45555556666666666666666666666543321 34566677777777777777777777777666
Q ss_pred CCCCh-hHHHHH-------HHHHHhc----CCHHHHHHHHHHHHHcCCCCCHH
Q 003397 698 GTPDL-VSYNTV-------IKGFCRQ----GLMQEAMRMLYEMTNRGIRPCIF 738 (823)
Q Consensus 698 ~~~~~-~~~~~l-------~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~ 738 (823)
+.... .+|..+ +.+-..+ .-++...++..+|.+.|..||..
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 54322 122110 0000001 11344567778888889999854
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-61 Score=544.39 Aligned_cols=510 Identities=19% Similarity=0.318 Sum_probs=460.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 210 DVRAYTSILHAYSKAGKYEKAISLFEKVKEMG-LSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTV 288 (823)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 288 (823)
+...|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.+. .+.+.+++..|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~-~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS-IRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 55678899999999999999999999998764 78999999999999999887 78999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCH
Q 003397 289 ISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFY 368 (823)
Q Consensus 289 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 368 (823)
+.+|++.|++++|.++|++|. .||..+||+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999996 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003397 369 EEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDM 448 (823)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 448 (823)
+.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.. +|..+||.+|.+|++.|+.++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964 58999999999999999999999999999
Q ss_pred hhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003397 449 KSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVT 528 (823)
Q Consensus 449 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 528 (823)
.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.+|..+|+.||++|+++|++++|.++|++|.+ +|..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974 6899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhh
Q 003397 529 TYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNF 608 (823)
Q Consensus 529 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 608 (823)
+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..+++.+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~------------------------- 447 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE------------------------- 447 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999998887665544
Q ss_pred hhhhHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 003397 609 KCRALQGMERAFQELQK-HGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAE 687 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 687 (823)
+|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|+.|+.+|...|+++.|.
T Consensus 448 ----------~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 448 ----------IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred ----------HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 4666654 588999999999999999999999999998765 57899999999999999999999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH---HHHH----c----CCChh
Q 003397 688 EILKGILKSGGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFV---SGYA----G----QGMFT 754 (823)
Q Consensus 688 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~---~~~~----~----~g~~~ 754 (823)
.+++++.+. .| +..+|+.|+++|++.|++++|.+++++|.+.|+... ..+|..+. ..+. . ..-++
T Consensus 515 ~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~ 592 (697)
T PLN03081 515 LAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592 (697)
T ss_pred HHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH
Confidence 999999764 44 567999999999999999999999999999998643 33332111 0000 0 11245
Q ss_pred HHHHHHHHHHhCCCCCCH
Q 003397 755 EIDEVIKHMFQHNCKPNE 772 (823)
Q Consensus 755 ~A~~~~~~~~~~~~~p~~ 772 (823)
...++..+|.+.|+.|+.
T Consensus 593 ~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 593 KLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHHHHcCCCCCc
Confidence 566778888889998874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.1e-36 Score=355.59 Aligned_cols=642 Identities=13% Similarity=0.040 Sum_probs=460.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 003397 140 LVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILH 219 (823)
Q Consensus 140 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 219 (823)
...+...+...|++++|...++.+....+ .+...+......+...|+++.|...++.+...+.. +...+..+..
T Consensus 230 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~ 303 (899)
T TIGR02917 230 LLALATILIEAGEFEEAEKHADALLKKAP-----NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGA 303 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 34556667778888888888888876533 23444555556666778888888888777665422 3344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003397 220 AYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLN 299 (823)
Q Consensus 220 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 299 (823)
.+...|++++|...|+++.+.. +.+...+..+...+.+.|+ +++|...++++.+.+ +.+...+..+...+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGR-VDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 7777888888888888877652 3355566667777777776 688888888877654 345667777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003397 300 EAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMS 379 (823)
Q Consensus 300 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 379 (823)
+|.++|+++.+.. +.+...+..+...+...|++++|...|+++.+.+. ........++..+.+.|++++|.++++.+.
T Consensus 381 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 381 KAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888877653 22455667777778888888888888888776542 233455566777778888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhH
Q 003397 380 SKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRIT 459 (823)
Q Consensus 380 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 459 (823)
... ..+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+. .+..+
T Consensus 459 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 535 (899)
T TIGR02917 459 KKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRA 535 (899)
T ss_pred HhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHH
Confidence 653 3366677778888888888888888888877653 23455667777778888888888888888776532 25667
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003397 460 WNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALAR 539 (823)
Q Consensus 460 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 539 (823)
+..+...+...|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+...|..+...+.+
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 7777777778888888888888776654 4455667777778888888888888888877643 3466777888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHH
Q 003397 540 RGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERA 619 (823)
Q Consensus 540 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 619 (823)
.|++++|...++++.+.. +.+...+..+..++...|++++|...++.+...... +...+..++..+...|++++|..+
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877653 235566777777788888888888887777654332 345666677777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 003397 620 FQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT 699 (823)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 699 (823)
++.+.+.+. .+...+..+...+...|++++|.+.|+.+.+.+ |+..++..++.++.+.|++++|.+.++++.+.. +
T Consensus 692 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~ 767 (899)
T TIGR02917 692 AKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-P 767 (899)
T ss_pred HHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 888777643 355667777777778888888888888877754 344666677777888888888888888877653 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003397 700 PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 700 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
.+..++..++..|...|++++|...|+++.+.+ +.+..+++.++..+...|+ ++|+.+++++.+.... +...+..++
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~ 844 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLG 844 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 466777777778888888888888888887752 3456677777788888887 7788888888764322 456677777
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 780 DGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 780 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.+|...|++++|.++++++.+.+|.+.
T Consensus 845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~ 871 (899)
T TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAA 871 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence 788888888888888888888877743
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-35 Score=349.59 Aligned_cols=636 Identities=14% Similarity=0.072 Sum_probs=326.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhc
Q 003397 145 KALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKA 224 (823)
Q Consensus 145 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 224 (823)
..+...|++++|...|+.+....+ .+..++..++.++...|+++.|...++.+...... +...+......+...
T Consensus 201 ~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 274 (899)
T TIGR02917 201 DLLLSLGNIELALAAYRKAIALRP-----NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQK 274 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHh
Confidence 344455555555555555554322 24445555555555555555555555555443221 222333333344455
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 003397 225 GKYEKAISLFEKVKEMGLSPT-LVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKE 303 (823)
Q Consensus 225 g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 303 (823)
|++++|...|+++.+.+ |+ ...+..+...+...|+ +++|...++++.+.. +.+...+..+...+.+.|++++|.+
T Consensus 275 ~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 350 (899)
T TIGR02917 275 KNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGN-LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIA 350 (899)
T ss_pred cCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 55555655555555432 22 1222222333334444 455555555555442 2234444555555555555555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003397 304 FFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGL 383 (823)
Q Consensus 304 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 383 (823)
.++.+.... ..+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+.+...
T Consensus 351 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 351 TLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 555555442 2234455555555555555666655555555432 22344445555555555555555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHH
Q 003397 384 MPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTM 463 (823)
Q Consensus 384 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 463 (823)
. +......++..+.+.|++++|..+++++... .+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 429 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 505 (899)
T TIGR02917 429 E-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANL 505 (899)
T ss_pred c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHH
Confidence 2 2233344455555555555555555555543 22344455555555555555555555555555432 1133344445
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 003397 464 LTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDW 543 (823)
Q Consensus 464 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 543 (823)
...+...|+.++|.++++.+.+.. +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..+.+.|++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCH
Confidence 555555555555555555555443 2344455555555555555555555555555432 22344455555555555556
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 003397 544 KAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQEL 623 (823)
Q Consensus 544 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 623 (823)
++|..+++++.+.. +.+...|..+..++...|++++|...++.+...... +...+..++..+...|++++|...|+++
T Consensus 584 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 584 KKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555432 234455555555555555555555555555433221 2233444555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChh
Q 003397 624 QKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLV 703 (823)
Q Consensus 624 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 703 (823)
.+... .+..++..++..+...|++++|.++++.+.+... .+...+..+...+.+.|++++|.+.|+++.+. .|+..
T Consensus 662 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 737 (899)
T TIGR02917 662 LELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQ 737 (899)
T ss_pred HhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCch
Confidence 54422 1344555555555555555556555555555432 24445555555555555566665555555543 23334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC 783 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 783 (823)
++..++.++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|++.|+++++..+. +..++..++..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4445555555555555555555555553 1223445555555555555556666655555554321 4455555555555
Q ss_pred hcCChHHHHHHHHHHhhcCCCCC
Q 003397 784 KARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 784 ~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
..|+ .+|+.+++++.+..|++.
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCCCc
Confidence 5555 555555555555555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.2e-26 Score=270.80 Aligned_cols=637 Identities=12% Similarity=0.040 Sum_probs=466.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHH------
Q 003397 140 LVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRA------ 213 (823)
Q Consensus 140 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 213 (823)
+...++.....++.+.|.+.++.+....+ -++.++..+++++.+.|+.+.|...++.+.+.... +...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-----~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~ 104 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-----NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 34455666677899999999999987644 37889999999999999999999999998776432 3322
Q ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCH
Q 003397 214 ----------YTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVT-YNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDE 282 (823)
Q Consensus 214 ----------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 282 (823)
...+...+.+.|++++|++.|+++.+.+ +++... ...+.......++ +++|.+.++++.+.. +-+.
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~-~~~A~~~L~~ll~~~-P~~~ 181 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQ-RPEAINQLQRLNADY-PGNT 181 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCcc-HHHHHHHHHHHHHhC-CCCH
Confidence 2334456889999999999999998753 333321 1111122223355 799999999999875 4466
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--cc-----------------cHHHHHHHHHhcCCHHHHHHHHHHH
Q 003397 283 FTCSTVISACGREGLLNEAKEFFAGLKLEGYVPG--TV-----------------TYNSLLQVFGKAGVYSEALSILKEM 343 (823)
Q Consensus 283 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~-----------------~~~~li~~~~~~~~~~~A~~~~~~m 343 (823)
..+..+...+...|+.++|++.++++........ .. .+...+..+-.....+.|...+.++
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 7788888999999999999999999865421000 00 1111111111222345566666655
Q ss_pred HhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 003397 344 EDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAP-NV 422 (823)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 422 (823)
......|+.. .......+...|++++|+..|++..+.... +...+..+..++.+.|++++|+..|++..+..... ..
T Consensus 262 ~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 262 QKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 4432223322 123456778899999999999999987543 78889999999999999999999999998754321 11
Q ss_pred HHH------------HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 003397 423 CTY------------NAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEP 490 (823)
Q Consensus 423 ~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 490 (823)
..| ......+.+.|++++|...|+++.+... .+...+..+...+...|++++|.+.|+++.+.. +.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~ 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 112 1224567789999999999999998632 255677778889999999999999999998764 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 003397 491 DRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFT--------PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSE 562 (823)
Q Consensus 491 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 562 (823)
+...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++|++.+++..+... -+.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 4566777777664 46789999888765432100 0123455677788899999999999999988642 256
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHH---------
Q 003397 563 TSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLV--------- 633 (823)
Q Consensus 563 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------- 633 (823)
..+..+...|.+.|++++|...++.+...... +......+...+...++.++|...++.+......++..
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 67788889999999999999999998765443 33334445556778899999999988765432222221
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003397 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFC 713 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 713 (823)
.+..+...+...|+.++|.++++. . +.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|.
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~----~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~ 648 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ----Q-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDI 648 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh----C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223456678899999999999872 2 3466677889999999999999999999999864 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC--C---CHHHHHHHHHHHHhcCC
Q 003397 714 RQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK--P---NELTYKIVVDGYCKARK 787 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~ 787 (823)
..|++++|++.++.+.+. .|+ ..++..+..++...|++++|.+++++++..... | +...+..+++.+...|+
T Consensus 649 ~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 999999999999988863 444 556777888999999999999999999874322 1 23467778999999999
Q ss_pred hHHHHHHHHHHhh
Q 003397 788 YKEAMDFLSKIKE 800 (823)
Q Consensus 788 ~~~A~~~~~~~~~ 800 (823)
+++|++.++++..
T Consensus 727 ~~~A~~~y~~Al~ 739 (1157)
T PRK11447 727 PQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999974
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=3.7e-25 Score=261.87 Aligned_cols=608 Identities=11% Similarity=0.055 Sum_probs=446.6
Q ss_pred HHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------
Q 003397 179 IQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYN-------- 250 (823)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-------- 250 (823)
+-..++.....++.+.|.+.++.+..... .++.++..++..+.+.|+.++|.+.++++.+. .|+...+.
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHh
Confidence 44556777889999999999998877643 37899999999999999999999999999986 34443331
Q ss_pred ---------HHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH
Q 003397 251 ---------VMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEF-TCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTY 320 (823)
Q Consensus 251 ---------~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 320 (823)
.+...+...|+ +++|.+.|+++.+.+ +++.. ....+.......|+.++|++.++++.+.. +.+...+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~-~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~ 184 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGR-TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLR 184 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCC-HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 22234666677 899999999998764 33322 22122222335699999999999999873 3356678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hh-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003397 321 NSLLQVFGKAGVYSEALSILKEMEDNNCPPD--SV-----------------TYNEVVGAYVRAGFYEEGAALIDTMSSK 381 (823)
Q Consensus 321 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~--~~-----------------~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (823)
..+...+...|++++|++.++++........ .. .+...+..+-.....+.|...+..+...
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 8899999999999999999999875421000 00 1111111111122344555566555444
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCC-ChhHH
Q 003397 382 GLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSP-NRITW 460 (823)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 460 (823)
...|+... ......+...|++++|+..|++..+... .+...+..+..+|.+.|++++|+..|++..+..... +...|
T Consensus 265 ~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 265 LADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred ccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 33333222 2345667789999999999999988643 377889999999999999999999999998753221 11112
Q ss_pred H------------HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003397 461 N------------TMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVT 528 (823)
Q Consensus 461 ~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 528 (823)
. .....+.+.|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 1 12345778999999999999999874 4566778889999999999999999999999764 23566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHH
Q 003397 529 TYNAFLNALARRGDWKAAESVILDMQNKGFK--------PSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLL 600 (823)
Q Consensus 529 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 600 (823)
.+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|...+++.....+. +..+.
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~ 498 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLT 498 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 6777777664 56789999888765432100 11223455677888999999999999998776654 34566
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH---------HHHH
Q 003397 601 RTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNL---------VTYN 671 (823)
Q Consensus 601 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~ 671 (823)
..+...|...|++++|...++++.+.... +...+..+...+...++.++|+..++.+......++. ..+.
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 77888999999999999999999876433 4455555555667889999999999876543222221 1223
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC
Q 003397 672 NLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQ 750 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~ 750 (823)
.+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|++.++. .| +...+..++.+|...
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 456778899999999999882 2446667788999999999999999999999985 44 477889999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 751 GMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 751 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
|++++|++.++.+.+.... +...+..++.++...|++++|.++++++....++.+.
T Consensus 651 g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 651 GDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9999999999998874322 5667788999999999999999999999988766543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.7e-22 Score=225.55 Aligned_cols=614 Identities=11% Similarity=0.002 Sum_probs=420.8
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 003397 147 LDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGK 226 (823)
Q Consensus 147 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 226 (823)
+...|++++|+..|+.+.+..+ .+..++..+.++|.+.|++++|+..++...+.+. -|...+..+ ..+ ++
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP-----~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~ 123 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVP-----DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PV 123 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---cc
Confidence 3444889999999999988654 3677888888999999999999999888877643 345555544 222 88
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccC
Q 003397 227 YEKAISLFEKVKEMGLSPT-LVTYNVMLDV--------YGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTV-ISACGREG 296 (823)
Q Consensus 227 ~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~--------~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~g 296 (823)
+++|..+|+++.+. .|+ ..++..+... |.+ ++++.+.++ .......|+..+.... ...|...|
T Consensus 124 ~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q----~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 124 EVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQ----LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred ChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhh----HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 88999999998876 344 3344443333 443 366666666 4444444445555554 78888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 003397 297 LLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGK-AGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALI 375 (823)
Q Consensus 297 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 375 (823)
++++|++++..+.+.+. .+......|...|.. .++ +++..+++.. +..+...+..++..|.+.|+.++|.+++
T Consensus 197 dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 197 QWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999888752 344446667777777 366 7777775542 2357778888888999999999999988
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 003397 376 DTMSSKGLM-PNAVTYTTLIDAYGRAGKVN-KALRLLNKMKESGCAPN-VCTYNAVLGMLGKKGRSEEMMKILCDMKSSG 452 (823)
Q Consensus 376 ~~~~~~~~~-p~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 452 (823)
+++...... |...++.-+ +.+.+... .|..-|.+ + ..++ ....-.++..+.+.++++.+.++..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 337 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------ 337 (987)
T ss_pred HhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------
Confidence 887654322 344333333 34444332 12211211 0 0111 1123334778888898887665522
Q ss_pred CCCChhHHHHHHHH--HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-CCCCHH
Q 003397 453 CSPNRITWNTMLTM--CGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKT-G-FTPCVT 528 (823)
Q Consensus 453 ~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~ 528 (823)
+.|.... ..+.. ....+...++...+..|.+.. +-+......+.-...+.|+.++|.++|+..... + ...+..
T Consensus 338 ~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 338 TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 2333332 22322 223456666777777776652 335555555666677889999999999988762 1 223455
Q ss_pred HHHHHHHHHHHcCC---HHHHHHH----------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHccCChh
Q 003397 529 TYNAFLNALARRGD---WKAAESV----------------------ILDMQNK-GF-KP--SETSFSLMLNCYAKGGNLK 579 (823)
Q Consensus 529 ~~~~li~~~~~~g~---~~~a~~~----------------------~~~m~~~-~~-~~--~~~~~~~ll~~~~~~~~~~ 579 (823)
....++..|.+.+. ...+..+ +...... +. .. +...+..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 66677777777765 3333333 1111111 11 23 56667777777776 7888
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003397 580 GIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLIL 659 (823)
Q Consensus 580 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 659 (823)
+|...+........ +......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++..+
T Consensus 494 eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88886666644443 3333444556667899999999999998665 3444556677788889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 003397 660 ESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IF 738 (823)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 738 (823)
+.... +...+..+.....+.|++++|...+++..+. .|+...|..+..++.+.|++++|+..|++.++. .|+ ..
T Consensus 570 ~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~ 644 (987)
T PRK09782 570 QRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSN 644 (987)
T ss_pred hcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 86532 3334444444555669999999999999985 567888999999999999999999999999984 565 56
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHH
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESV 810 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 810 (823)
.++.+..++...|++++|+..++++++..+. +...+..++.+|...|++++|+..++++.+..|++.....
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh
Confidence 6788888999999999999999999985433 6788999999999999999999999999999998866543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2.5e-21 Score=217.92 Aligned_cols=616 Identities=10% Similarity=0.004 Sum_probs=422.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHH
Q 003397 139 DLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSIL 218 (823)
Q Consensus 139 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 218 (823)
....+.+.+...|+.++|+..++.+.+..+ .+...+..+..+ +++..|..+++.+...... +..++..+.
T Consensus 80 ~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-----~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la 149 (987)
T PRK09782 80 LTLYLAEAYRHFGHDDRARLLLEDQLKRHP-----GDARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRC 149 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHH
Confidence 345677888999999999999999988643 244444444322 8899999999999876533 566666666
Q ss_pred HH--------HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003397 219 HA--------YSKAGKYEKAISLFEKVKEMGLSPTLVTYNVM-LDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVI 289 (823)
Q Consensus 219 ~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 289 (823)
.. |.+.+. |.+.++ .......|+..+.... ...|...++ |+++++++.++.+.+ ..+......|.
T Consensus 150 ~~~~~~~~l~y~q~eq---Al~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~d-w~~Ai~lL~~L~k~~-pl~~~~~~~L~ 223 (987)
T PRK09782 150 RSEVGQNALRLAQLPV---ARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQ-WSQADTLYNEARQQN-TLSAAERRQWF 223 (987)
T ss_pred HHhhccchhhhhhHHH---HHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhC-HHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 65 766644 444444 3333345556665555 888888887 899999999999997 44566677777
Q ss_pred HHHHc-cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHHcCC
Q 003397 290 SACGR-EGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCP-PDSVTYNEVVGAYVRAGF 367 (823)
Q Consensus 290 ~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~ 367 (823)
.+|.. .++ +++..++... ...+...+..+...|.+.|+.++|..+++++...... |...+|.-+ +.+.+.
T Consensus 224 ~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~ 295 (987)
T PRK09782 224 DVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSA 295 (987)
T ss_pred HHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccC
Confidence 78887 466 7888885532 2357788899999999999999999999998764322 444444333 444444
Q ss_pred HH-HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HcCCCHHHHHH
Q 003397 368 YE-EGAALIDTMSSKGLMPN-AVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGML--GKKGRSEEMMK 443 (823)
Q Consensus 368 ~~-~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~ 443 (823)
.. .|..-|.+ ...++ ......++..+.+.++++.++++.. +.|.... ..++.. ...+...++..
T Consensus 296 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 296 NPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALR 363 (987)
T ss_pred chhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHH
Confidence 32 11111111 01111 1122334677778888876665522 2222222 122222 23356666666
Q ss_pred HHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---hHHHHHH----
Q 003397 444 ILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSC-G-FEPDRDTFNTLISAYGRCGS---GVDATKM---- 514 (823)
Q Consensus 444 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~~~---~~~a~~~---- 514 (823)
.++.|.+.. .-+......+.-...+.|+.++|.++++..... + -..+......|+..|.+.+. ..++..+
T Consensus 364 ~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 364 LARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 666666541 113333333334456777888888888777652 1 12334444566666666554 2222222
Q ss_pred ---------------------HHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003397 515 ---------------------FEDMMKTGFTP--CVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNC 571 (823)
Q Consensus 515 ---------------------~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 571 (823)
+...... -+. +...|..+..++.. ++.++|...+.+..... |+......+...
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 1122211 123 56778888877776 88888999888877653 555544445555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 003397 572 YAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRA 651 (823)
Q Consensus 572 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 651 (823)
+...|++++|...++.+...... ......+...+.+.|+.++|...+++..+.+.. +...+..+...+...|++++|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMS--NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCC--cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHH
Confidence 67899999999999887554333 233456677888899999999999999887422 333333444455567999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003397 652 NEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
...+++.++.. |+...+..+..++.+.|++++|+..+++..+.. +.+...++.+..++...|++++|+..|++.++.
T Consensus 596 l~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999864 568889999999999999999999999999864 336678888999999999999999999999984
Q ss_pred CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 732 GIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 732 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
.|+ ...+..+..++...|++++|+..++++++. .|+ ..+.....+...+..+++.|.+.+++.....+.-
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 454 677899999999999999999999999984 454 5677788888999999999999999888777663
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-20 Score=195.76 Aligned_cols=662 Identities=13% Similarity=0.065 Sum_probs=456.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--CCCCCHH-HHHHHHHHHh-----------ccCChHHHHHHHhhcc
Q 003397 138 IDLVTVLKALDVSGYRERALLLFEWLAVNSSFE--NGKLDKE-VIQLMVRILG-----------KESRHSIASKLLDLIP 203 (823)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~-~~~~l~~~~~-----------~~~~~~~a~~~~~~~~ 203 (823)
+.+..+...|...|..++++.+.+......... ..+.+.. +++.+..-+. +...+..|..+|+...
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 345667788999999999999998876221110 0000111 1222222221 1112344555555443
Q ss_pred cCCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC--C
Q 003397 204 LEKYSLD-VRAYTSILHAYSKAG--KYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRG--L 278 (823)
Q Consensus 204 ~~~~~~~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~ 278 (823)
.-....+ ...+... .|...| +++.|.+.|....+. .|+...+-..=..+.-...++..|+.+|......+ .
T Consensus 122 ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQ--SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 2211111 1111111 223333 369999999998875 45554443333333334445899999999966543 3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhH
Q 003397 279 EFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPG-TVTYNSLLQVFGKA---GVYSEALSILKEMEDNNCPPDSVT 354 (823)
Q Consensus 279 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~ 354 (823)
.+|. ...+..++.+.|+.+.|+..|....+. .|+ +.++-.|.-.-... ..+..+..++...-..+ ..++..
T Consensus 198 ~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~ 272 (1018)
T KOG2002|consen 198 KADV--RIGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVA 272 (1018)
T ss_pred CCCc--cchhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHH
Confidence 3443 333446677999999999999999887 342 22332222222222 33566777776665443 356788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003397 355 YNEVVGAYVRAGFYEEGAALIDTMSSKGLM--PNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGML 432 (823)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 432 (823)
.+.|...|.-.|+++.++.+...+...... .-...|-.+..+|-..|++++|...|.+..+..-.--+..+..+...|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 899999999999999999999988775311 123457778999999999999999999887753222244566788999
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003397 433 GKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKG----LDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSG 508 (823)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 508 (823)
.+.|+++.+...|+.+.+.. +-+..|...+...|...+ ..+.|..++....+.. ..|...|..+...+-. ++.
T Consensus 353 i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~ 429 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDP 429 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cCh
Confidence 99999999999999998862 225566666666676664 4567777777776653 5567778777766654 444
Q ss_pred HHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHcc
Q 003397 509 VDATKMFEDMM----KTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNK---GFKPSE------TSFSLMLNCYAKG 575 (823)
Q Consensus 509 ~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~ 575 (823)
..++.+|..+. ..+..+.....|.+...+...|++++|...|...... ...++. .+-..+..++-..
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 44466665443 4455578899999999999999999999999988765 122222 2344566677777
Q ss_pred CChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003397 576 GNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEML 655 (823)
Q Consensus 576 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 655 (823)
++.+.|.++++.+....+.- ...+..+..+....+...+|...++...+.+ ..+..+++.+...+.+...+..|.+-|
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~Y-Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGY-IDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchh-HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHH
Confidence 89999999999986654321 1222233333344567888888888887654 336677777888888888888998878
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHH------------cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 003397 656 HLILESG-MQPNLVTYNNLMDMYAR------------AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAM 722 (823)
Q Consensus 656 ~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 722 (823)
+.+.+.- ..+|..+...|.+.|.+ .+..++|+++|.++++.. +.|..+-|.+.-+++..|++.+|.
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHH
Confidence 7776532 23577777777876653 345788999999999874 448888899999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 003397 723 RMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH-NCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKER 801 (823)
Q Consensus 723 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 801 (823)
.+|.+..+... -+..+|..+.++|...|+|-.|+++|+...+. ...-+..+...|.+++.+.|++.+|.+++..+...
T Consensus 667 dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 667 DIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999998632 35678999999999999999999999998853 33446788899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH
Q 003397 802 DDSFNDESVKRLTF 815 (823)
Q Consensus 802 ~~~~~~~~~~~l~~ 815 (823)
.|.+.....+....
T Consensus 746 ~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 746 APSNTSVKFNLALV 759 (1018)
T ss_pred CCccchHHhHHHHH
Confidence 99997765555443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.1e-20 Score=191.57 Aligned_cols=557 Identities=16% Similarity=0.114 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH--hccCChHHHHHHHhhccc--CCCCCCHHHHHHHHHHHHhcCCHH
Q 003397 153 RERALLLFEWLAVNSSFENGKLDKEVIQLMVRIL--GKESRHSIASKLLDLIPL--EKYSLDVRAYTSILHAYSKAGKYE 228 (823)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~ 228 (823)
.+.|.+.|....++++. + +...+.+++ ...+++..|..+|..+.. ....+|+++ .+..++.+.|+.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~-----N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-----N--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSE 216 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-----c--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchh
Confidence 57899999999887552 2 344444444 457799999999988544 333445443 4557788999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003397 229 KAISLFEKVKEMGLSPTLVTYNVMLDVYGKMG---RSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFF 305 (823)
Q Consensus 229 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 305 (823)
.|+..|++..+. .|+.+.-...|..+...- ..+..++.++...-..+ .-+++..+.|.+.|.-.|+++.+..+.
T Consensus 217 ~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la 293 (1018)
T KOG2002|consen 217 KALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLA 293 (1018)
T ss_pred hHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHH
Confidence 999999999885 554444333333333222 22455666666555444 447778888999999999999999999
Q ss_pred HHHHhCCCC--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003397 306 AGLKLEGYV--PGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDS--VTYNEVVGAYVRAGFYEEGAALIDTMSSK 381 (823)
Q Consensus 306 ~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (823)
..+...... .-...|..+.++|-..|++++|...|.+..... ++. ..+.-+...|++.|+++.+...|+.+.+.
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 988776311 123457789999999999999999998887653 333 34456788999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh----hCCC
Q 003397 382 GLMPNAVTYTTLIDAYGRAG----KVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMK----SSGC 453 (823)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~ 453 (823)
... +..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+....-+. ++..|.... ..+-
T Consensus 372 ~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~ 448 (1018)
T KOG2002|consen 372 LPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGK 448 (1018)
T ss_pred Ccc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCC
Confidence 432 5667777777777664 5677778877777653 347777877777776554443 366665443 3444
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003397 454 SPNRITWNTMLTMCGNKGLDKYVNQVFREMKSC---GFEPDR------DTFNTLISAYGRCGSGVDATKMFEDMMKTGFT 524 (823)
Q Consensus 454 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 524 (823)
.+.....|.+.......|++..|...|...... ...+|. .+--.+...+-..++.+.|.+.|..+.+.. +
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p 527 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-P 527 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-c
Confidence 567788888888888999999999998887654 112222 223344555666778899999999888752 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCC-CChHHHHHHH
Q 003397 525 PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRI-FPSWMLLRTL 603 (823)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 603 (823)
--+..|-.+.......++..+|...+++..+.. ..+...++.+...+.....+..+..-+..+..... .++....-.|
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 123445555544445577888888888877643 33555555566667766666666665444432221 2344444444
Q ss_pred HHHhh------------hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003397 604 ILVNF------------KCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYN 671 (823)
Q Consensus 604 ~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 671 (823)
...+. ..+..++|.++|.++++..+. |..+-|.+.-.++..|++.+|..+|.+..+...+ ...+|.
T Consensus 607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~l 684 (1018)
T KOG2002|consen 607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWL 684 (1018)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceee
Confidence 33332 223345566666666555433 4555555555566666666666666666654321 334555
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 672 NLMDMYARAGKCWKAEEILKGILKS-GGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
.+.++|..+|++..|+++|+...+. ....+..+...|..++.+.|++.+|.+.+.....
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666666666666666655433 2233445556666666666666666666555554
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-21 Score=192.78 Aligned_cols=439 Identities=15% Similarity=0.139 Sum_probs=304.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003397 320 YNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGR 399 (823)
Q Consensus 320 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 399 (823)
...|..-..+.|++++|++.-...-..+ +.+....-.+-..+.+..+++....--....+...+ -..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 3445556667777777777665554432 122223333344555556666555544444443222 45667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHH-HHHHHHccCCHHHHHH
Q 003397 400 AGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNT-MLTMCGNKGLDKYVNQ 478 (823)
Q Consensus 400 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~ 478 (823)
.|++++|+.+++.+++.... .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +-......|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 77777777777777765322 4566777777777777777777777776653 344333222 2233344566667766
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 003397 479 VFREMKSCGFEPD-RDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKG 557 (823)
Q Consensus 479 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 557 (823)
.|.+.++.. |. ...|..|...+...|+...|++.|++.++.... -...|-.|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 666666542 22 245666666666677777777777776654211 2455666666666666666666666655543
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003397 558 FKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNS 637 (823)
Q Consensus 558 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 637 (823)
.|+ ....+..+...|...|.++-|+..|++.++..+. -...|+.
T Consensus 282 -rpn----------------------------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~N 325 (966)
T KOG4626|consen 282 -RPN----------------------------------HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNN 325 (966)
T ss_pred -CCc----------------------------------chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhH
Confidence 222 1223334555677777788888888888876332 3568999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcC
Q 003397 638 MLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD-LVSYNTVIKGFCRQG 716 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 716 (823)
|..++...|++.+|.++|+..+..... .....+.|...|...|.+++|..+|....+. .|. ....+.|...|-.+|
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcc
Confidence 999999999999999999999886533 5677888999999999999999999988874 444 367888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 003397 717 LMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARKYKEAMDF 794 (823)
Q Consensus 717 ~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 794 (823)
++++|+..|++.+. +.|+ ...|+.+...|-..|+.+.|++.+.+++. +.|. ......|+..|..+|+..+|+.-
T Consensus 403 nl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 403 NLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred cHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 99999999999987 7888 56789999999999999999999999987 5554 66788999999999999999999
Q ss_pred HHHHhhcCCCCCHHHH
Q 003397 795 LSKIKERDDSFNDESV 810 (823)
Q Consensus 795 ~~~~~~~~~~~~~~~~ 810 (823)
+++++++.|++++...
T Consensus 479 Y~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 479 YRTALKLKPDFPDAYC 494 (966)
T ss_pred HHHHHccCCCCchhhh
Confidence 9999999999977533
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=7.8e-21 Score=188.13 Aligned_cols=450 Identities=14% Similarity=0.137 Sum_probs=345.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 003397 285 CSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVR 364 (823)
Q Consensus 285 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (823)
...|..-..+.|++++|++.-...-... ..+....-.+-.++.+..+++....--....+.. +--..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556678899999999877665542 2233344444566777777777665554444432 3346789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHcCCCHHHHHH
Q 003397 365 AGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNA-VLGMLGKKGRSEEMMK 443 (823)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~ 443 (823)
.|++++|+.+++.+++.... ....|..+..++...|+.+.|.+.|.+.++. .|+.....+ +...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987544 6788999999999999999999999998875 466554433 4445556899999999
Q ss_pred HHHHhhhCCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003397 444 ILCDMKSSGCSPN-RITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPD-RDTFNTLISAYGRCGSGVDATKMFEDMMKT 521 (823)
Q Consensus 444 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 521 (823)
.+.+.++. .|. .+.|..|...+...|+...|...|++..+. .|+ ...|-.|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 99888775 333 467888888899999999999999999875 344 467889999999999999999999888764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHH
Q 003397 522 GFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPS-ETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLL 600 (823)
Q Consensus 522 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 600 (823)
. +-..+.+..+...|...|..+.|+..+++..+.. |+ ...|+.+..++...|+..
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~--------------------- 337 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVT--------------------- 337 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchH---------------------
Confidence 3 2256778888889999999999999999998763 33 455666666666555554
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003397 601 RTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARA 680 (823)
Q Consensus 601 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 680 (823)
+|.+.|.+....... ...+.+.|...|...|.+++|..+|....+-... -...++.|...|-++
T Consensus 338 --------------ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 338 --------------EAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQ 401 (966)
T ss_pred --------------HHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhc
Confidence 445555555544221 4557888999999999999999999998875322 346778899999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHH
Q 003397 681 GKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDE 758 (823)
Q Consensus 681 g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 758 (823)
|++++|+..|++.++ +.|+. .+|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...|-.+|++.+|+.
T Consensus 402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 999999999999987 56665 6889999999999999999999999887 5665 5678899999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 003397 759 VIKHMFQHNCKPN-ELTYKIVVDGYCKARKYK 789 (823)
Q Consensus 759 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 789 (823)
-++..++ ++|| ...|..++.++--..+|.
T Consensus 478 sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 478 SYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 9999987 5666 566777777665444443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=6.6e-18 Score=188.00 Aligned_cols=258 Identities=11% Similarity=0.021 Sum_probs=129.6
Q ss_pred cCChHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 003397 505 CGSGVDATKMFEDMMKTG-F-TPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIR 582 (823)
Q Consensus 505 ~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 582 (823)
.+++++|.+.|+...+.+ . +.....++.+...+...|++++|+..+++..+... -....|..+...+...|+++++.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777776643 1 22344566666667777777777777777766421 12334445555555555555444
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003397 583 KIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESG 662 (823)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 662 (823)
..++.. .+... .+..+|..+...+...|++++|+..|++.++..
T Consensus 386 ~~~~~a-----------------------------------l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 386 EDFDKA-----------------------------------LKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHH-----------------------------------HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444333 33211 133445555555555555555555555555543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H---
Q 003397 663 MQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI-F--- 738 (823)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~--- 738 (823)
.. +...+..+..++.+.|++++|+..|++..+.. +.+...++.+..++...|++++|++.|++.++. .|+. .
T Consensus 430 P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~ 505 (615)
T TIGR00990 430 PD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYM 505 (615)
T ss_pred cc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccc
Confidence 21 34444455555555555555555555555431 223445555555555555555555555555542 1210 0
Q ss_pred ----HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 739 ----TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 739 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
.++..+..+...|++++|+++++++++.... +...+..++.+|.+.|++++|.++++++.+..+.
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 0111111222245555555555555543211 2334555555555555555555555555555443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=8.5e-17 Score=179.13 Aligned_cols=457 Identities=12% Similarity=0.007 Sum_probs=293.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 003397 285 CSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVR 364 (823)
Q Consensus 285 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (823)
+......+.+.|++++|++.|++.++. .|+...|..+..+|.+.|++++|+..++...+.+ +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566778889999999999888765 5677778888888888999999999998888764 3456678888888899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003397 365 AGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKI 444 (823)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 444 (823)
.|++++|+.-|......+...+.. ...++..+.. ..+........+.. +.+...+..+.. |......+....-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 999999988887665543221222 1222222111 12222233332221 112222222222 1111111111111
Q ss_pred HHHhhhCCCCCCh-hHHHHHHHH---HHccCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003397 445 LCDMKSSGCSPNR-ITWNTMLTM---CGNKGLDKYVNQVFREMKSCG-FEP-DRDTFNTLISAYGRCGSGVDATKMFEDM 518 (823)
Q Consensus 445 ~~~~~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 518 (823)
+....+. .+.. ..+..+... ....+.+++|.+.|+...+.+ ..| ....+..+...+...|++++|+..++..
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 1110 111111111 123467889999999988764 223 3456788888888999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHH
Q 003397 519 MKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWM 598 (823)
Q Consensus 519 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 598 (823)
++.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 358 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------------------- 414 (615)
T TIGR00990 358 IELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGE--------------------- 414 (615)
T ss_pred HHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------------------
Confidence 8753 2246678888889999999999999999987753 2234555555555554444
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003397 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYA 678 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 678 (823)
+++|...|++..+.... +...+..+...+.+.|++++|+..|++.++... .+...++.+..++.
T Consensus 415 --------------~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 415 --------------FAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLL 478 (615)
T ss_pred --------------HHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHH
Confidence 55555556666555322 456777788888899999999999999887643 26778888999999
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCChh------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC
Q 003397 679 RAGKCWKAEEILKGILKSGGTPDLV------SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQG 751 (823)
Q Consensus 679 ~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 751 (823)
..|++++|++.|++..+.....+.. .++..+..+...|++++|.+++++.++. .|+ ...+..++.++...|
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcc
Confidence 9999999999999988753221111 1222223344569999999999998874 454 456888999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 003397 752 MFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 752 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 803 (823)
++++|++.|+++.+..-. ... ...+..+.+|.++...+.+..|
T Consensus 557 ~~~eAi~~~e~A~~l~~~-~~e--------~~~a~~~~~a~~~~~~~~~~~~ 599 (615)
T TIGR00990 557 DVDEALKLFERAAELART-EGE--------LVQAISYAEATRTQIQVQEDYP 599 (615)
T ss_pred CHHHHHHHHHHHHHHhcc-HHH--------HHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999874221 111 2233355566666666666543
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.8e-17 Score=183.42 Aligned_cols=408 Identities=10% Similarity=-0.003 Sum_probs=249.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHH
Q 003397 397 YGRAGKVNKALRLLNKMKESG--CAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDK 474 (823)
Q Consensus 397 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 474 (823)
+.+..+++.---+|....++. -.-+..-...++..+.+.|++++|..+++........ +...+..++.+....|+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 345667766655555443321 1112233445566777888888888888888776333 3444555556667788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003397 475 YVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQ 554 (823)
Q Consensus 475 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 554 (823)
.|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 8888888887764 4455677777788888888888888888887652 2356677778888888888888888888776
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHH
Q 003397 555 NKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVI 634 (823)
Q Consensus 555 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 634 (823)
..... +...+..+ ..+...|++++|...++.+..............+...+...|++++|...++++.+.+.. +...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHH
Confidence 65322 22233222 346677777777777776655433333333334445566667777777777776665432 4556
Q ss_pred HHHHHHHHHccCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003397 635 FNSMLSICAKNSMYDR----ANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
+..+...|...|++++ |...|+++++..+. +...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 6666666777777664 66677776665432 55566666777777777777777777766642 223455566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 003397 711 GFCRQGLMQEAMRMLYEMTNRGIRPCIFT-YNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNE----LTYKIVVDGYCKA 785 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 785 (823)
++.+.|++++|+..|+++.+. .|+... +..+..++...|++++|+..++++++....--. .....+.+++...
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAV 404 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhc
Confidence 777777777777777776653 344322 333455666677777777777777653222111 1223333444444
Q ss_pred CChHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003397 786 RKYKEAMDFLSKIKERDDSFNDESVKRLT 814 (823)
Q Consensus 786 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 814 (823)
+..++...|..++.-.+.+.+...|.+-.
T Consensus 405 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 433 (656)
T PRK15174 405 NLPPERLDWAWEVAGRQSGIERDEWERRA 433 (656)
T ss_pred CCccchhhHHHHHhcccccCChHHHHHHH
Confidence 44444445555555555555555555433
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=7.9e-15 Score=153.35 Aligned_cols=642 Identities=13% Similarity=0.069 Sum_probs=399.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Q 003397 143 VLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYS 222 (823)
Q Consensus 143 ~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 222 (823)
....+..+|+.++|..++..++++.+ ..+..|..+..+|-..|+...+...+-.+.+.+.. |...|..+.....
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp-----~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~ 218 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDP-----RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCc-----cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 34556667999999999999999855 47889999999999999999999998887776533 6799999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCH
Q 003397 223 KAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTC----STVISACGREGLL 298 (823)
Q Consensus 223 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~g~~ 298 (823)
+.|.+++|.-.|.+..+.. +++...+---...|.+.|. ...|..-|.++.+....-|..-+ -.+++.+...++-
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~-~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGD-LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh-HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999873 3444444455677888887 68999999999877532222223 3345667778888
Q ss_pred HHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------
Q 003397 299 NEAKEFFAGLKLEG-YVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPP--------------------------- 350 (823)
Q Consensus 299 ~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--------------------------- 350 (823)
+.|.+.++.....+ -.-+...++.++..|.+...++.|......+......+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 99999999887642 23456688999999999999999999998887622222
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 351 DSVTYNEVVGAYVRAGFYEEGAALIDTMSSKG--LMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAV 428 (823)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 428 (823)
+..++ .++-++......+...-+........ +.-+...|.-+.++|...|++.+|+.+|..+...-..-+...|-.+
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 22221 22334444555555555555555554 4446778999999999999999999999999887555577899999
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHH
Q 003397 429 LGMLGKKGRSEEMMKILCDMKSSGCSP-NRITWNTMLTMCGNKGLDKYVNQVFREMKS--------CGFEPDRDTFNTLI 499 (823)
Q Consensus 429 i~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~li 499 (823)
..+|...|..++|++.|+..+.. .| +...-..|-..+.+.|+.++|.+.+..+.. .+..|+........
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 99999999999999999999876 33 445556666778999999999999988542 23445555556666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Q 003397 500 SAYGRCGSGVDATKMFEDMMKTG----------------------FTPCVTTYNAFLNALARRGDWKAAESVILD----- 552 (823)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----- 552 (823)
+.+...|+.++-+.+...|+... ..........++.+-.+.++.....+-...
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 77888888887665555554311 111122222333333333332211111110
Q ss_pred -HHhCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHhCCCCCh-HH----HHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003397 553 -MQNKGFKPSE--TSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPS-WM----LLRTLILVNFKCRALQGMERAFQELQ 624 (823)
Q Consensus 553 -m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 624 (823)
-...+...+. ..+.-++.++++.+.+.+|..+...+........ .. +-...+.+....++...|...++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0111111111 2234455566666666666666555533322211 11 12223344445556666666665554
Q ss_pred HC-CCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC
Q 003397 625 KH-GYKP---DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTP 700 (823)
Q Consensus 625 ~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 700 (823)
.. +... -...||...+.+.+.++----..++.........-+...+.........++.+..|+..+-++... .|
T Consensus 694 ~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~p 771 (895)
T KOG2076|consen 694 TQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NP 771 (895)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CC
Confidence 43 1111 122444444444443332222222222222211111222222233344567777787777766654 44
Q ss_pred ChhHHHHH-HHHHHh----------cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 003397 701 DLVSYNTV-IKGFCR----------QGLMQEAMRMLYEMTNRGIR-PCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNC 768 (823)
Q Consensus 701 ~~~~~~~l-~~~~~~----------~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 768 (823)
+....+.+ .-++.. +-.+-.++.++.+..+.... -...++..+.++|-..|-..-|+.+|++.++..+
T Consensus 772 d~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 772 DSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 43222222 222211 11234455555555442111 1345677788888888888888888888886421
Q ss_pred C-----------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003397 769 K-----------PNELTYKIVVDGYCKARKYKEAMDFLSK 797 (823)
Q Consensus 769 ~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 797 (823)
. .-...-..|.-.|..+|+...|..++++
T Consensus 852 ~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 852 KDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 1 1122334566678888888888888765
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.3e-18 Score=182.28 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=71.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCC
Q 003397 393 LIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGL 472 (823)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 472 (823)
+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|...|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 3333444444444444444443321 112233334444444444444444444444432111112233444444444455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 003397 473 DKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALAR---RGDWKAAESV 549 (823)
Q Consensus 473 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~ 549 (823)
.++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+
T Consensus 265 ~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 265 EAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLL 340 (389)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHH
Confidence 55555544444443 233333444455555555555555555554443 3444455544444443 2345555555
Q ss_pred HHHHHhCCCCC
Q 003397 550 ILDMQNKGFKP 560 (823)
Q Consensus 550 ~~~m~~~~~~~ 560 (823)
+++|.+.++.+
T Consensus 341 ~~~~~~~~~~~ 351 (389)
T PRK11788 341 LRDLVGEQLKR 351 (389)
T ss_pred HHHHHHHHHhC
Confidence 55555444433
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3.4e-18 Score=180.96 Aligned_cols=307 Identities=13% Similarity=0.082 Sum_probs=219.1
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 003397 429 LGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPD---RDTFNTLISAYGRC 505 (823)
Q Consensus 429 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 505 (823)
...+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456677888888888888887632 2455777777788888888888888888876532221 24567777888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 003397 506 GSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIE 585 (823)
Q Consensus 506 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 585 (823)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------------- 179 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI-------------------- 179 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH--------------------
Confidence 88888888888887642 335677888888888888888888888887765422211100
Q ss_pred HHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 003397 586 KEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQP 665 (823)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 665 (823)
...+..++..+...|++++|...|+++.+... .+...+..+...|.+.|++++|.++++++.+.+...
T Consensus 180 -----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 180 -----------AHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred -----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 01122344445556667777777777766532 245577777888888888888888888888754333
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003397 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
...+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 3456778888888888888888888888775 456566678888888888888888888888873 688888887777
Q ss_pred HHHc---CCChhHHHHHHHHHHhCCCCCCHH
Q 003397 746 GYAG---QGMFTEIDEVIKHMFQHNCKPNEL 773 (823)
Q Consensus 746 ~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 773 (823)
.+.. .|+.++++.++++|.+.++.|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6664 557888888888888766666544
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=7.4e-14 Score=140.24 Aligned_cols=623 Identities=11% Similarity=0.053 Sum_probs=473.1
Q ss_pred CCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003397 151 GYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKA 230 (823)
Q Consensus 151 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 230 (823)
++...|..+++...+.++ ..+..|-.-.+.=-..|.+..|..+...-.+. ...+..+|---+ +....+.|
T Consensus 265 ~DikKaR~llKSvretnP-----~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~a 334 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNP-----KHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVA 334 (913)
T ss_pred HHHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHH
Confidence 356778888888887655 35667766666667788888888877654433 233555555443 44566677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003397 231 ISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKL 310 (823)
Q Consensus 231 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 310 (823)
..+.-...+. ++.++..|---...=. +...=.++++...+. ++-++..|.. .+...+.++|..++.+..+
T Consensus 335 K~vvA~Avr~-~P~Sv~lW~kA~dLE~----~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAve 404 (913)
T KOG0495|consen 335 KTVVANAVRF-LPTSVRLWLKAADLES----DTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVE 404 (913)
T ss_pred HHHHHHHHHh-CCCChhhhhhHHhhhh----HHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHH
Confidence 7777766654 2333333432222111 122334466665554 2333434443 4455677779999998887
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH----HhCCCCCC
Q 003397 311 EGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTM----SSKGLMPN 386 (823)
Q Consensus 311 ~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~~~~p~ 386 (823)
. -|.. .-|.-+|.+..-|+.|..+++...+. ++-+...|.+-...--.+|+.+...+++++- ...|+..+
T Consensus 405 c--cp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 405 C--CPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred h--ccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeec
Confidence 5 2222 23555677888899999999998875 6778888888777777899999999888764 45688889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHH
Q 003397 387 AVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPN--VCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTML 464 (823)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 464 (823)
...|..=...|-..|.+--+..+....+.-|+.-. ..+|+.-...|.+.+.++-|..+|...++- ..-+...|....
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~ 557 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAA 557 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHH
Confidence 99999989999999999999999999988776533 468888999999999999999999998875 233567787777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003397 465 TMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWK 544 (823)
Q Consensus 465 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 544 (823)
..--..|..+....+++++... ++-....|......+-..|+...|..++....+.... +..+|-+-+.....+.+++
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHH
Confidence 7777889999999999999876 2445566777778888899999999999999886433 7788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 003397 545 AAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQ 624 (823)
Q Consensus 545 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 624 (823)
.|..+|.+.... .++...|..-+......++.++|.++.++....-. .-..++..+...+.+.++++.|...|..-.
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 999999998764 56788887777777788999999999987755432 234577788889999999999999988765
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhH
Q 003397 625 KHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVS 704 (823)
Q Consensus 625 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 704 (823)
+. ..-....|-.+...=.+.|.+-+|..+++...-.++. +...|...+.+-.+.|+.+.|..++.+.++. ++.+...
T Consensus 713 k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~L 789 (913)
T KOG0495|consen 713 KK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLL 789 (913)
T ss_pred cc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchh
Confidence 54 2224567888888778889999999999999988765 8899999999999999999999999999876 4556678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003397 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCK 784 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 784 (823)
|..-|....+.++-......+++. .-|......+...+....++++|.+.|++.++.+.. +-.+|.-+...+.+
T Consensus 790 WaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHH
Confidence 888888888777755555555543 457788888888899999999999999999986543 56788889999999
Q ss_pred cCChHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003397 785 ARKYKEAMDFLSKIKERDDSFNDESVKRLTF 815 (823)
Q Consensus 785 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 815 (823)
+|.-++-.+++++...-.|..-+ .|..+.+
T Consensus 864 hG~eed~kev~~~c~~~EP~hG~-~W~avSK 893 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCETAEPTHGE-LWQAVSK 893 (913)
T ss_pred hCCHHHHHHHHHHHhccCCCCCc-HHHHHhh
Confidence 99999999999999888887743 3444333
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.2e-16 Score=176.79 Aligned_cols=361 Identities=8% Similarity=-0.012 Sum_probs=277.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 003397 361 AYVRAGFYEEGAALIDTMSSK--GLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRS 438 (823)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 438 (823)
.+.+..+++..--.|....++ .-.-+..-...++..+.+.|+.++|+.+++........ +...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 345666777665555543322 11113333455677788899999999999999887444 455566666777789999
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003397 439 EEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDM 518 (823)
Q Consensus 439 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 518 (823)
++|...++++..... .+...+..+...+...|+.++|...++.+.+.. +.+...+..+...+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999988632 245677777888999999999999999998763 445678888899999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHH
Q 003397 519 MKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWM 598 (823)
Q Consensus 519 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 598 (823)
...... +...+..+ ..+...|++++|...++.+......++......+..++...|++++|...+......... +..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHH
Confidence 765432 33444333 347889999999999999877643344555566677888999999999999988765533 456
Q ss_pred HHHHHHHHhhhhhhHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003397 599 LLRTLILVNFKCRALQG----MERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLM 674 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 674 (823)
....+...+...|++++ |...|++..+..+. +..++..+...+...|++++|...++++++.... +...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 66778888999999885 79999998887543 6678889999999999999999999999987543 566778889
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003397 675 DMYARAGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 675 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
.+|.+.|++++|+..|+++.+. .|+. ..+..+..++...|+.++|...|++..+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999875 3443 33444577889999999999999999874
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=5e-16 Score=175.98 Aligned_cols=414 Identities=11% Similarity=0.013 Sum_probs=280.2
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003397 350 PDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVL 429 (823)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 429 (823)
.+..-..-.+......|+.++|++++.+..... ..+...+..+...+...|++++|.+++++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344455566677777888888888888877632 2345567777788888888888888888877652 22455666777
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003397 430 GMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGV 509 (823)
Q Consensus 430 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 509 (823)
..+...|+.++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 77888888888888888887652 22334 6666677778888888888888887763 334555566666777777777
Q ss_pred HHHHHHHHHHhCCCCCCH------HHHHHHHHHHHH-----cCCH---HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHc
Q 003397 510 DATKMFEDMMKTGFTPCV------TTYNAFLNALAR-----RGDW---KAAESVILDMQNK-GFKPSETSFSLMLNCYAK 574 (823)
Q Consensus 510 ~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~ 574 (823)
.|++.++.+.. .|+. .....++..... .+++ ++|+..++.+.+. ...|+..
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~----------- 233 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT----------- 233 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc-----------
Confidence 78777765553 2221 011111111111 1112 3344444444332 1111110
Q ss_pred cCChhHHHHHHHHHHhCCCCChHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHH
Q 003397 575 GGNLKGIRKIEKEIYAGRIFPSWM-LLRTLILVNFKCRALQGMERAFQELQKHGYK-PDLVIFNSMLSICAKNSMYDRAN 652 (823)
Q Consensus 575 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 652 (823)
+... .....+..+...|++++|...|+.+.+.+.. |+. ....+...|...|++++|+
T Consensus 234 --------------------~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 234 --------------------ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred --------------------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence 0000 0001012234557888899999998877532 332 2222567888999999999
Q ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-----------CCC---hhHHHHHHHHHHhc
Q 003397 653 EMLHLILESGMQP---NLVTYNNLMDMYARAGKCWKAEEILKGILKSGG-----------TPD---LVSYNTVIKGFCRQ 715 (823)
Q Consensus 653 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~ 715 (823)
..|+.+.+..... .......|..++.+.|++++|..+++++.+... .|+ ...+..++..+...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 9999988654221 134566677788999999999999999986521 122 23456677889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 003397 716 GLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDF 794 (823)
Q Consensus 716 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 794 (823)
|++++|+++++++.+. .+-+...+..++..+...|++++|++.++++++. .| +...+..++..+.+.|++++|...
T Consensus 373 g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 373 NDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999884 2334667888999999999999999999999984 45 467778888899999999999999
Q ss_pred HHHHhhcCCCCC
Q 003397 795 LSKIKERDDSFN 806 (823)
Q Consensus 795 ~~~~~~~~~~~~ 806 (823)
++++++..|++.
T Consensus 450 ~~~ll~~~Pd~~ 461 (765)
T PRK10049 450 TDDVVAREPQDP 461 (765)
T ss_pred HHHHHHhCCCCH
Confidence 999999999975
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.8e-15 Score=165.85 Aligned_cols=454 Identities=11% Similarity=0.058 Sum_probs=302.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003397 321 NSLLQVFGKAGVYSEALSILKEMEDNNCPPDS--VTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYG 398 (823)
Q Consensus 321 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 398 (823)
..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence 334445667888888888888887653 442 233 77777778888888888888877321 112333344456777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHH
Q 003397 399 RAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQ 478 (823)
Q Consensus 399 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 478 (823)
..|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|.+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 778888888888888876433 4566667777888888888888888888765 4454445334334444555555888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003397 479 VFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGF 558 (823)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 558 (823)
.++++.+.. +.+...+..++..+.+.|-...|.++..+-... +. ...+.-| . .+.|.+..+-.....-
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l-~-------~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL-E-------RDAAAEQVRMAVLPTR 258 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH-H-------HHHHHHHHhhcccccc
Confidence 888887764 445666777777777888777777666543321 11 1111111 0 0111111111000000
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHhC-CCCCh--H---HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCH
Q 003397 559 KPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAG-RIFPS--W---MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDL 632 (823)
Q Consensus 559 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 632 (823)
. ...-|. -.+.+..-.+.+... ...|. . .+....+..+...++..++++.|+.+...+...-.
T Consensus 259 ~-~~~r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 259 S-ETERFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred c-chhhHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 0 000000 111222222222221 11111 1 12223445567788999999999999988765445
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC---------
Q 003397 633 VIFNSMLSICAKNSMYDRANEMLHLILESGM-----QPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGG--------- 698 (823)
Q Consensus 633 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 698 (823)
.+-..+.++|...+++++|..+++.+..... .++......|..+|...+++++|..+++++.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 5778899999999999999999999876431 22444457899999999999999999999987311
Q ss_pred --CCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CH
Q 003397 699 --TPDL---VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NE 772 (823)
Q Consensus 699 --~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~ 772 (823)
.||. ..+..++..+...|++.+|.+.++++... -+-|......+.+.+...|+..+|++.++.+... .| +.
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccH
Confidence 1222 23455678889999999999999999874 3446778899999999999999999999888764 44 57
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 773 LTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 773 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
.+....+..+...|++.+|....+++.+..|++..
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 77888999999999999999999999999999763
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.7e-15 Score=144.21 Aligned_cols=448 Identities=18% Similarity=0.212 Sum_probs=287.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003397 210 DVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGR--SWDRILGLLDEMRSRGLEFDEFTCST 287 (823)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ 287 (823)
.+.+-|.|+.. ..+|.++++.-+|+.|...|++.+...-..|+...+..+. ..-.-++.|-.|...| ..+..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 34555666654 4678999999999999999888777766666554443322 1112234455555554 2222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 003397 288 VISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGF 367 (823)
Q Consensus 288 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (823)
+.|++.+ -+|+.. +.+..+|.+||.++|+-...+.|.++|++......+.+..+||.+|.+-.-.
T Consensus 191 ------K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 4455443 333333 3366789999999999999999999999998887788899999988765433
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH-HH
Q 003397 368 YEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNK----ALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEE-MM 442 (823)
Q Consensus 368 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~ 442 (823)
...+++.+|.+..+.||..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 237889999999999999999999999999998765 46778889999999999999999999988887643 44
Q ss_pred HHHHHhhh----CCCCC----ChhHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCC
Q 003397 443 KILCDMKS----SGCSP----NRITWNTMLTMCGNKGLDKYVNQVFREMKSCG----FEPD---RDTFNTLISAYGRCGS 507 (823)
Q Consensus 443 ~~~~~~~~----~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~ 507 (823)
.++.++.. +..+| |...|...+..|....+.+.|.++...+.... +.++ ..-|..+....|....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 22333 44556677778888888888888776654321 1222 2345667777788888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 003397 508 GVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKE 587 (823)
Q Consensus 508 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 587 (823)
.+...+.|+.|+-.-+.|+..+...++++..-.|.++-.-+++.++...|..-+.....-++..+++..-
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~---------- 483 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL---------- 483 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC----------
Confidence 8888899999887777788888888888888889999888898888887654444444444444433331
Q ss_pred HHhCCCCChHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--
Q 003397 588 IYAGRIFPSWMLLRTLILVNFKC--RALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGM-- 663 (823)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 663 (823)
.|.......+-....++ ...+..+..-.++.+... .....+.++-.+.+.|..++|.+++..+.+.+-
T Consensus 484 ------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 484 ------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred ------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 11100000010001100 011111222223333322 334455555566677777777777776654331
Q ss_pred --CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 003397 664 --QPNLVTYNNLMDMYARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 664 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 696 (823)
.|......-+++.-.+.++...|..+++-|...
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 122223334444555556666666666666544
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=3.7e-15 Score=168.91 Aligned_cols=431 Identities=10% Similarity=0.029 Sum_probs=231.8
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 003397 280 FDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVV 359 (823)
Q Consensus 280 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (823)
.+..-..-.+......|+.++|++++....... ..+...+..+...+...|++++|..+|++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344444555555666777777777777665421 2334456666677777777777777777766542 33445555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 003397 360 GAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSE 439 (823)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 439 (823)
..+...|++++|...++++.+.... +.. +..+..++...|+.++|+..++++.+.... +...+..+...+...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 6667777777777777777665322 444 666666666777777777777777665322 4444555666666667777
Q ss_pred HHHHHHHHhhhCCCCCCh------hHHHHHHHHHHc-----cCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHH
Q 003397 440 EMMKILCDMKSSGCSPNR------ITWNTMLTMCGN-----KGLD---KYVNQVFREMKSC-GFEPDRD-TF----NTLI 499 (823)
Q Consensus 440 ~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~li 499 (823)
+|+..++.... .|+. .....++..... .+++ +.|...++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 77776665543 1221 011111111111 1112 4455555555432 1111110 11 0001
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcc
Q 003397 500 SAYGRCGSGVDATKMFEDMMKTGFT-PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKP---SETSFSLMLNCYAKG 575 (823)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~ 575 (823)
..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+.+|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2233445666666666665554321 211 11113445556666666666666554432110 012223333334444
Q ss_pred CChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHH
Q 003397 576 GNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPD---LVIFNSMLSICAKNSMYDRAN 652 (823)
Q Consensus 576 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 652 (823)
|++++|...++.+......... ++. .....|+ ...+..+...+...|++++|+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~---------------------~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLR---------------------LYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEe---------------------ecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444443333221110000 000 0001123 234555666777788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003397 653 EMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG 732 (823)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 732 (823)
++++++....+. +...+..+...+...|++++|++.++++.+.. +.+...+..++..+...|++++|..+++++++
T Consensus 380 ~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~-- 455 (765)
T PRK10049 380 MRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA-- 455 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Confidence 888888776533 56777788888888888888888888887753 22345566666777788888888888888887
Q ss_pred CCCCHHHHHHHHHHH
Q 003397 733 IRPCIFTYNTFVSGY 747 (823)
Q Consensus 733 ~~p~~~~~~~l~~~~ 747 (823)
..|+......+-..+
T Consensus 456 ~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 456 REPQDPGVQRLARAR 470 (765)
T ss_pred hCCCCHHHHHHHHHH
Confidence 356655544444444
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=2.2e-13 Score=142.70 Aligned_cols=623 Identities=13% Similarity=0.079 Sum_probs=412.4
Q ss_pred CCHHHHHHHH--HHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003397 174 LDKEVIQLMV--RILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNV 251 (823)
Q Consensus 174 ~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 251 (823)
+++.+-..+. ..+...|++++|..++..+.+... .+...|..|...|-..|+.+++...+-...... +-|...|..
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 4454443333 344556999999999999988764 478899999999999999999999887665542 446677888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH----HHHHHHH
Q 003397 252 MLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTY----NSLLQVF 327 (823)
Q Consensus 252 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~----~~li~~~ 327 (823)
+-......|. +++|.-.|.+..+.+ +++...+---...|-+.|+...|..-|.++.......+..-+ -.+++.+
T Consensus 213 ladls~~~~~-i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 213 LADLSEQLGN-INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHhccc-HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 8887778777 899999999999886 445555555667788999999999999999877322222222 2345667
Q ss_pred HhcCCHHHHHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---------------------
Q 003397 328 GKAGVYSEALSILKEMEDNN-CPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMP--------------------- 385 (823)
Q Consensus 328 ~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--------------------- 385 (823)
...++-+.|.+.++.....+ -..+...++.++..|.+...++.|......+......+
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 77888899999998887632 23355678899999999999999999888877622222
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCCh
Q 003397 386 ------NAVTYTTLIDAYGRAGKVNKALRLLNKMKESG--CAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNR 457 (823)
Q Consensus 386 ------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 457 (823)
+...+ -+.-++......+....+...+.... ..-+...|.-+..+|...|++.+|+++|..+...-..-+.
T Consensus 371 ~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 22221 12223445555555555555666555 3345667889999999999999999999999987555567
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------CCCCCCHHH
Q 003397 458 ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMK--------TGFTPCVTT 529 (823)
Q Consensus 458 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~ 529 (823)
..|-.+..+|...|..+.|.+.|+..+... +.+...--.|...+-+.|+.++|.+.++.+.. .+..|+..+
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHH
Confidence 889999999999999999999999998763 34456667777888999999999999988652 223445555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHccCChhHHHHH---
Q 003397 530 YNAFLNALARRGDWKAAESVILDMQNKG----------------------FKPSETSFSLMLNCYAKGGNLKGIRKI--- 584 (823)
Q Consensus 530 ~~~li~~~~~~g~~~~a~~~~~~m~~~~----------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~--- 584 (823)
.-...+.+.+.|+.++-+.+...|.... ..-...+....+.+-.+.++......-
T Consensus 529 ~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d 608 (895)
T KOG2076|consen 529 LAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSD 608 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccc
Confidence 5556677888898887665555554321 111122223333333333332211111
Q ss_pred ---HHHHHhCC-CCChH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCChHHHHHH
Q 003397 585 ---EKEIYAGR-IFPSW-MLLRTLILVNFKCRALQGMERAFQELQKHGY-KPDLV----IFNSMLSICAKNSMYDRANEM 654 (823)
Q Consensus 585 ---~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~ 654 (823)
.......+ ...+| ..+..++...++.+++.+|..+...+..... .-+.. .-..++.+....+++..|...
T Consensus 609 ~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~ 688 (895)
T KOG2076|consen 609 GTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSY 688 (895)
T ss_pred hhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11111111 12233 4667788899999999999999888776532 11222 223455666788999999999
Q ss_pred HHHHHHc-CC--CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 655 LHLILES-GM--QP-NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 655 ~~~~~~~-~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
++.++.. +. .+ -...|+..++.+.+.++-.--..++..+......-+........+-+..++.+.-|+..+-....
T Consensus 689 lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 689 LRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 9988864 11 11 22455555555555555444444444443322221122222233445567888999998777766
Q ss_pred cCCCCCHHHHHHH-HHHHH----------cCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003397 731 RGIRPCIFTYNTF-VSGYA----------GQGMFTEIDEVIKHMFQHN-CKPNELTYKIVVDGYCKARKYKEAMDFLSKI 798 (823)
Q Consensus 731 ~~~~p~~~~~~~l-~~~~~----------~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 798 (823)
..||....+.+ +.++. ++-.+-.++.++++..+.. ..-...++..++++|-..|-..-|..+|+++
T Consensus 769 --~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 --QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred --hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 35664333322 22221 1112344555555554422 2123667888999999999999999999999
Q ss_pred hhcCCC
Q 003397 799 KERDDS 804 (823)
Q Consensus 799 ~~~~~~ 804 (823)
++..|.
T Consensus 847 L~~~p~ 852 (895)
T KOG2076|consen 847 LEVSPK 852 (895)
T ss_pred hCCCcc
Confidence 998654
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=6.8e-13 Score=133.46 Aligned_cols=581 Identities=12% Similarity=0.071 Sum_probs=420.3
Q ss_pred CChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003397 190 SRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGL 269 (823)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 269 (823)
++...|+.++..+.+.+.. ++..|.+-.+.--..|++..|..+..+-.+. ++-+...|.--++ -. . -+.+..+
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR---Lh-p-~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR---LH-P-PDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh---cC-C-hHHHHHH
Confidence 3455666666666655432 4445554444444555555555554443332 2222222322211 11 1 2344444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003397 270 LDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCP 349 (823)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 349 (823)
....... -|.+. ...+.+---..+...=.+++...++. ++.++..|. .-......+.|+.++.+..+. |+
T Consensus 338 vA~Avr~--~P~Sv--~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 338 VANAVRF--LPTSV--RLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHHh--CCCCh--hhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh-cc
Confidence 4444433 12221 11122222223333345666666665 233344444 344556677799999998875 33
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHHHH
Q 003397 350 PDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKM----KESGCAPNVCTY 425 (823)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~ 425 (823)
.+.. |..+|.+..-|+.|.+++.+..+. +.-+...|.+-...--..|+.+...+++++- ...|+..+...|
T Consensus 408 ~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 3333 445677888899999999998886 5558888888777777899999999998764 456888888889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003397 426 NAVLGMLGKKGRSEEMMKILCDMKSSGCSPN--RITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYG 503 (823)
Q Consensus 426 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 503 (823)
-.=...+-..|..--+..+.+..+.-|+.-. ..||..-.+.|.+.+.++-+..+|...++. ++-+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 8888888889999999999998888776543 468888889999999999999999998875 3445567777777767
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 003397 504 RCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRK 583 (823)
Q Consensus 504 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 583 (823)
..|..++-..+|++..... +.....|-.....+-..|+...|..++....+.... +...|...+........++.++.
T Consensus 562 ~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHH
Confidence 7899999999999998864 335667777778888899999999999998887533 77888889999999999999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003397 584 IEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDL-VIFNSMLSICAKNSMYDRANEMLHLILESG 662 (823)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 662 (823)
++..... ..+...++...+....-.+..++|.+++++.++. .|+- -.|..+.+.+.+.++.+.|.+.|..-.+.-
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 9888755 3445556666666666778999999999998886 4554 478888899999999999999998877643
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003397 663 MQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNT 742 (823)
Q Consensus 663 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 742 (823)
+...-.|..|...--+.|++-.|..++++..-++ +.+...|-..|.+-.+.|+.++|..+..+.++. ++-+...|..
T Consensus 716 -P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaE 792 (913)
T KOG0495|consen 716 -PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAE 792 (913)
T ss_pred -CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHH
Confidence 3356678888888889999999999999998765 447889999999999999999999999998875 4555677877
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 743 FVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
-|...-+.++-...+..+++. +-|......+...+....++++|++|+.++.+.+|++-+
T Consensus 793 aI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 787777777755555544433 346777788899999999999999999999999999854
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.7e-14 Score=136.19 Aligned_cols=446 Identities=17% Similarity=0.156 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCCHHHH-HHHHHHHHhCCCCCCcccHHH
Q 003397 246 LVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISA--CGREGLLNEA-KEFFAGLKLEGYVPGTVTYNS 322 (823)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~A-~~~~~~~~~~g~~~~~~~~~~ 322 (823)
+.+=|.|+..... +. ..++.-+|+.|++.|+.-+...-..|+.. |....+.--| .+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~kmIS~-~E-vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMISS-RE-VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHHHHhh-cc-cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 3445556555544 33 57888899999999988888776666654 3333333322 24455555555 3345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003397 323 LLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGK 402 (823)
Q Consensus 323 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 402 (823)
+.|.+.+ ++-+.. +.+..++..||.++|+-...+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-- 255 (625)
T ss_pred ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--
Confidence 3455544 333332 4467899999999999999999999999999888888999999999775432
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH----HHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHH-HH
Q 003397 403 VNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEE----MMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKY-VN 477 (823)
Q Consensus 403 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~ 477 (823)
...+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 337899999999999999999999999999998864 56788999999999999999999999999887744 33
Q ss_pred HHHHHHH----HCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCC
Q 003397 478 QVFREMK----SCGFE----PDRDTFNTLISAYGRCGSGVDATKMFEDMMKTG----FTPC---VTTYNAFLNALARRGD 542 (823)
Q Consensus 478 ~~~~~~~----~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~ 542 (823)
.+..++. -..++ .|...|..-+..|.+..+.+-|.++..-+.... +.++ ..-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 22222 244567778888888999998988876655321 1222 2235667777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 003397 543 WKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQE 622 (823)
Q Consensus 543 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 622 (823)
.+.....|+.|.-.-+-|+..+...++++..-.+.++-..+++..+..-+..... +--+.++..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~----------------~l~eeil~~ 477 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS----------------DLREEILML 477 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH----------------HHHHHHHHH
Confidence 8999999999988878888899999999888888888777777666433321111 111233333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc-CChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-
Q 003397 623 LQKHGYKPDLVIFNSMLSICAKN-SMYDRANE-MLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT- 699 (823)
Q Consensus 623 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 699 (823)
+....+.|+...-..+-...++. -++.++.+ --.++.+.. -.....+.+.-.+.+.|+.++|.+++.-+.+++-+
T Consensus 478 L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 478 LARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred HhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 44444444333211111111111 11112211 112233322 23445566666677778888888877777554322
Q ss_pred CChhHHH---HHHHHHHhcCCHHHHHHHHHHHHHc
Q 003397 700 PDLVSYN---TVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 700 ~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
|-....| -+++.-...+....|+..++-|...
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 2222333 3344445556666677766666554
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=4.2e-14 Score=156.63 Aligned_cols=427 Identities=13% Similarity=0.081 Sum_probs=198.6
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHH
Q 003397 293 GREGLLNEAKEFFAGLKLEGYVPGT--VTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEE 370 (823)
Q Consensus 293 ~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (823)
.+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++..... .........+...|...|++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3555555555555555544 2332 122 45555555555555555555555211 1111222222334555556666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 003397 371 GAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKS 450 (823)
Q Consensus 371 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 450 (823)
|+++|+++.+.... |...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 66666555555333 3444445555555555555665555555543 23333333333333334444445555555555
Q ss_pred CCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----HhcCC---hHHHHHHHH
Q 003397 451 SGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDT------FNTLISAY-----GRCGS---GVDATKMFE 516 (823)
Q Consensus 451 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~li~~~-----~~~~~---~~~a~~~~~ 516 (823)
.. +-+...+..+..+..+.|-...|.++..+-... +.+...- ...+++.- ....+ .+.|+.-++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 42 113344444445555555555554443331110 0000000 00011000 01112 233444444
Q ss_pred HHHhC-CCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHh
Q 003397 517 DMMKT-GFTPC-VTTY----NAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYA 590 (823)
Q Consensus 517 ~~~~~-~~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 590 (823)
.+... +..|. ...| --.+.++...|++.++++.++.+...+......+...+..+|...+..++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 44431 11121 1111 123445667777777777777777766555555666777777777777777777666644
Q ss_pred CCCC-----ChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHccCChHHH
Q 003397 591 GRIF-----PSWMLLRTLILVNFKCRALQGMERAFQELQKHGY-------------KPDLV-IFNSMLSICAKNSMYDRA 651 (823)
Q Consensus 591 ~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~-~~~~l~~~~~~~~~~~~A 651 (823)
.... ++......|...|...+++++|..+++.+.+..+ .||-. .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 3311 1111123444455555555555555555544211 11111 222333444455555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 652 NEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
.+.++.+....+. |......+.+.+...|.+.+|++.++...... +-+..+....+.++...+++++|..+.+.+.+
T Consensus 436 e~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 5555555554322 55555555555555555555555554444321 22333444445555555555555555555554
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.7e-15 Score=145.04 Aligned_cols=480 Identities=11% Similarity=0.072 Sum_probs=248.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003397 214 YTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFD----EFTCSTVI 289 (823)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll 289 (823)
...|..-|..+....+|+..|+-+.+...-|+.-....=|....-..+.+.+|+++|+-....-...+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 33344445555555566666655555544444433322222111112224555555544433211111 22344444
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhH--------HHHHHHH
Q 003397 290 SACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVT--------YNEVVGA 361 (823)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--------~~~li~~ 361 (823)
-.+.+.|.+++|+.-|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+..-..+|..- -..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5577889999999999988776 67766555566666667888889999998876432222221 1122222
Q ss_pred HHHcCCH-----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003397 362 YVRAGFY-----------EEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLG 430 (823)
Q Consensus 362 ~~~~g~~-----------~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 430 (823)
-.+...+ ++++-.--+++.--+.|+-. .| .+-+++.++.-....+..+.. -.-..
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dle--i~ka~ 427 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDLE--INKAG 427 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhhh--hhHHH
Confidence 2221111 11111111122111222210 00 122222222221110110110 11223
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHH-HHc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003397 431 MLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTM-CGN-KGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSG 508 (823)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 508 (823)
.|.++|+++.|+++++-+.+..-+.-...-+.|-.. |.+ ..++..|..+-+..+... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 567889999999999888765322222222222222 222 335566666665554332 22222222222334456888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 003397 509 VDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEI 588 (823)
Q Consensus 509 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 588 (823)
++|.+.+++.+...-. .......+.-.+-..|+.++|+..|-++... +..+...+..
T Consensus 507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~q--------------------- 563 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ--------------------- 563 (840)
T ss_pred HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH---------------------
Confidence 8888888888764221 1122222233466778888888888776532 1112222222
Q ss_pred HhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH
Q 003397 589 YAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLV 668 (823)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 668 (823)
++..|-...+...|++++.+.... +..|+.+.+-|...|-+.|+-.+|.+++-+--.. ++-+..
T Consensus 564 --------------ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie 627 (840)
T KOG2003|consen 564 --------------IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIE 627 (840)
T ss_pred --------------HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchH
Confidence 233333334444455555444332 2335667777777777777777777766554442 233666
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK-GFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
+...|...|....-+++|+.+|++..- +.|+..-|-.++. ++.+.|++..|.++|+....+ ++-|..++..|++.+
T Consensus 628 ~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 628 TIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 667777777777777777777776654 4677777776664 445567777777777776654 555667777777777
Q ss_pred HcCCC
Q 003397 748 AGQGM 752 (823)
Q Consensus 748 ~~~g~ 752 (823)
...|.
T Consensus 705 ~dlgl 709 (840)
T KOG2003|consen 705 GDLGL 709 (840)
T ss_pred ccccc
Confidence 66664
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=5.7e-15 Score=141.49 Aligned_cols=493 Identities=12% Similarity=0.094 Sum_probs=325.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhHHH
Q 003397 282 EFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTY-NSLLQVFGKAGVYSEALSILKEMEDNNCPPD----SVTYN 356 (823)
Q Consensus 282 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~ 356 (823)
-.+...|...|.......+|+..|+-+++....|+.... ..+.+.+.+...+.+|++.|+...+.-...+ ....+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 334555666777778888999999999888777775432 3466788899999999999988876521111 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHH
Q 003397 357 EVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCA------------PNVCT 424 (823)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~ 424 (823)
.+...+.+.|.++.|+.-|+...+. .||..+-..|+-++.--|+-++..+.|.+|+.--.. |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 5666788899999999999998876 467665555555666678999999999999764222 22222
Q ss_pred HHHHHH-----HHHcCC--CHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003397 425 YNAVLG-----MLGKKG--RSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNT 497 (823)
Q Consensus 425 ~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 497 (823)
.+.-|. -.-+.. +.++++-.--+++.--+.|+... -.+.+.+.++.-....+..+.. ..
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ 424 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--IN 424 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hh
Confidence 222221 111111 11222222222222112222110 0122222222211111111111 11
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003397 498 LISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALAR--RGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKG 575 (823)
Q Consensus 498 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 575 (823)
-...|.+.|+++.|.++++-+.++.-+.-...-+.|-..+.- -.++..|.++-+...... +-+......-.......
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 123577899999999999888776433333333333322222 345777777766665432 22333333333445567
Q ss_pred CChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003397 576 GNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEML 655 (823)
Q Consensus 576 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 655 (823)
|+++++.+.+++.+..+..-. ..+..+...+-+.|++++|...|-.+..- +..+..+...+.+.|....+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 899999999998876654432 23344556677889999999998876543 1236677788888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003397 656 HLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP 735 (823)
Q Consensus 656 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 735 (823)
.+.... ++.|..+...|.+.|-+.|+-.+|.+.+-+-.+. ++-+..+..-|...|....-+++|+.+|++..- +.|
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp 657 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQP 657 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCc
Confidence 887764 4558899999999999999999999887666553 566788888888889999999999999998766 789
Q ss_pred CHHHHHHHHHH-HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 736 CIFTYNTFVSG-YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 736 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
+..-|..++.. +.+.|++.+|..+++...+. +.-|......|++.+...|-. +|.++-+++.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~-d~key~~kle 720 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKLE 720 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-hHHHHHHHHH
Confidence 99999877655 46799999999999999764 444888889999998888754 4666655554
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.4e-12 Score=124.57 Aligned_cols=386 Identities=12% Similarity=0.048 Sum_probs=267.9
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 003397 418 CAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDR--DTF 495 (823)
Q Consensus 418 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 495 (823)
...|...+....-.+.+.|....|++.|...... -+..|.+.+....-..+.+.+..+ .. +...|. ..-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHH
Confidence 3345444444455566677777888877776653 223333333332222222222211 11 112111 111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 003397 496 NTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGF--KPSETSFSLMLNCYA 573 (823)
Q Consensus 496 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~ 573 (823)
-.+..++-...+.+++..-.+.....|+..+...-+....+.....++++|+.+|+++.+... --|..+|+.++-.-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 223445556667788888888888878776666666666666778888888888888887632 125666766664433
Q ss_pred ccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 003397 574 KGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANE 653 (823)
Q Consensus 574 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 653 (823)
....+.-.......+ ... .+.....++..|.-.++.++|...|++..+.+.. ...+|+.|..-|...++...|++
T Consensus 311 ~~skLs~LA~~v~~i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNI--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHHHHHHHHHHHHh--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 222221111111111 111 1223344566677888999999999999987543 56789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003397 654 MLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGI 733 (823)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 733 (823)
-++.+++-.+. |-..|-.|+.+|.-.+...-|+-+|++..+.. +-|...|.+|..+|.+.++.++|++.|......|-
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999997644 89999999999999999999999999999863 44778999999999999999999999999998653
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 734 RPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ----HNCKPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 734 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
. +...+..|...|-+.++.++|...+++-++ .|...+ .....-|..-+.+.+++++|..+..+...-++ .-
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~--e~ 540 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET--EC 540 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc--hH
Confidence 3 668899999999999999999999998876 233322 33334577788999999999999999887743 46
Q ss_pred HHHHHHHHHHHHHhc
Q 003397 808 ESVKRLTFRVREILE 822 (823)
Q Consensus 808 ~~~~~l~~~~~~~~~ 822 (823)
+.-+.|...++++++
T Consensus 541 eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 541 EEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHhcC
Confidence 777888888888753
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=4.6e-11 Score=115.98 Aligned_cols=438 Identities=9% Similarity=0.052 Sum_probs=217.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHHcCCHHHHHH
Q 003397 295 EGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDS-VTYNEVVGAYVRAGFYEEGAA 373 (823)
Q Consensus 295 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~ 373 (823)
.+++..|..+|+..+... ..+...|-.-+.+-.+++.+..|..++++.+.. -|.+ ..|-..+-.--..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 444445555555544432 223334444444444555555555555554432 1111 122222222333455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 003397 374 LIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGC 453 (823)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 453 (823)
+|++..+. .|+...|.+.|+.-.+.+.++.|..++++..- +.|++.+|--....-.++|....|..+|+..++.
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 55554443 44555555555555555555555555554443 2345555554444445555555555555444432
Q ss_pred CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHH
Q 003397 454 SPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPC--VTTYN 531 (823)
Q Consensus 454 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 531 (823)
--|...- ...+.+....-.++..++.|.-+|+-.++.- +.+ ...|.
T Consensus 237 ~~~d~~~-------------------------------e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k 284 (677)
T KOG1915|consen 237 LGDDEEA-------------------------------EILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYK 284 (677)
T ss_pred hhhHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHH
Confidence 0011111 1122222222223344444444444444321 111 22333
Q ss_pred HHHHHHHHcCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHH-HHHH
Q 003397 532 AFLNALARRGDWKAAESV--------ILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWM-LLRT 602 (823)
Q Consensus 532 ~li~~~~~~g~~~~a~~~--------~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 602 (823)
.+...--+-|+....... ++.+... -.-|-.+|.-.++.....|+.+...++++.....-+..+.. ....
T Consensus 285 ~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R 363 (677)
T KOG1915|consen 285 KYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH
Confidence 333322233332221111 1111211 12344455555555555555555555555554433322111 0111
Q ss_pred --------HHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HccCChHHHHHHHHHHHHcCCCCCHHHH
Q 003397 603 --------LILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSIC----AKNSMYDRANEMLHLILESGMQPNLVTY 670 (823)
Q Consensus 603 --------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 670 (823)
....-....+.+.+.++|+.+++. ++....+|.-+--+| .++.++..|.+++..++ |.-|...++
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlF 440 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHH
Confidence 011112445677777777777763 222334554443333 35677888888877766 345677777
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHc
Q 003397 671 NNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG-IRPCIFTYNTFVSGYAG 749 (823)
Q Consensus 671 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~ 749 (823)
...|..-.+.++++.+..++++.++-+. -|..+|......-...|+.+.|..+|+-.+++. +.-....|...++--..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 7777777788888888888888877642 256777777777777788888888888777642 11224456666666677
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003397 750 QGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 750 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
.|.+++|..+++++++.. +...+|-+.+.
T Consensus 520 ~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred cchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 788888888888887632 23334544443
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2.1e-10 Score=111.51 Aligned_cols=431 Identities=12% Similarity=0.128 Sum_probs=293.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHH
Q 003397 263 WDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTV-TYNSLLQVFGKAGVYSEALSILK 341 (823)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~~~~~~A~~~~~ 341 (823)
+..|.++|+...... .-+...|.-.+.+=.+...+..|..+++..+.. -|-+. .|...+.+--..|++..|.++|+
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 578899999988765 335556666777778899999999999998876 34432 45555555667899999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CC
Q 003397 342 EMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKES-G-CA 419 (823)
Q Consensus 342 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~ 419 (823)
+..+- .|+...|++.|+.-.+.+.++.|..++++.+-- .|++.+|--....-.+.|.+..|..+|+...+. | -.
T Consensus 166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 98874 799999999999999999999999999998864 489999999888888999999999999988764 1 11
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC--hhHHHHHHHHHHccCCHHHHHHH--------HHHHHHCCCC
Q 003397 420 PNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPN--RITWNTMLTMCGNKGLDKYVNQV--------FREMKSCGFE 489 (823)
Q Consensus 420 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~ 489 (823)
-+...+.++...-..+..++.|.-+|+-.++. ++-+ ...|......--+-|+.....+. ++.+++.+ +
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 13345666666666788889999999988876 2222 34455555544555665544433 23334433 5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHHHhCCCC
Q 003397 490 PDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCV--TTYNAFL--------NALARRGDWKAAESVILDMQNKGFK 559 (823)
Q Consensus 490 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li--------~~~~~~g~~~~a~~~~~~m~~~~~~ 559 (823)
.|-.+|-.+++.-...|+.+...++|+..+.. ++|-. ..|...| -.-....+.+.+.++++..++. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 66777888888777888889899999888864 33321 1222222 1123467788888888887773 33
Q ss_pred CCHHHHHHHHHHHH----ccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 003397 560 PSETSFSLMLNCYA----KGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIF 635 (823)
Q Consensus 560 ~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 635 (823)
-...||..+--.|+ ++.++..|++++-... +.-|-..++...+..-.+.++++.+..+|+..++-++. +..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHH
Confidence 34555554433333 4556666666655442 33455566677777777777777777777777766543 55566
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHH
Q 003397 636 NSMLSICAKNSMYDRANEMLHLILESG-MQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVI 709 (823)
Q Consensus 636 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 709 (823)
......=...|+.+.|..+|+.+++.. +......|.+.|+.-...|.++.|..+++++++. .+...+|..+.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 666666566777777777777776532 2223345555566556677777777777777764 23334555444
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=9.4e-10 Score=111.23 Aligned_cols=563 Identities=12% Similarity=0.108 Sum_probs=281.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhhcccC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003397 177 EVIQLMVRILGKESRHSIASKLLDLIPLE-KYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDV 255 (823)
Q Consensus 177 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 255 (823)
.+|-..+..+.++|+...-+..|+..... .+.-..++|...+...-..|-++-++.+|++..+. +...-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 44545555555555555555555544331 11112344555555555555555555555555442 22223444444
Q ss_pred HHhcCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCCC--cccHHHHH
Q 003397 256 YGKMGRSWDRILGLLDEMRSR------GLEFDEFTCSTVISACGREGLLNE---AKEFFAGLKLEGYVPG--TVTYNSLL 324 (823)
Q Consensus 256 ~~~~~~~~~~a~~~~~~m~~~------~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~--~~~~~~li 324 (823)
+++.++ +++|.+.+...... ..+.+...|.-+.....+.-+.-. ...++..+... -+| ...|.+|.
T Consensus 179 L~~~d~-~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSDR-LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhccc-hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 444444 45555544443321 112333344444443333222221 23344444333 223 34678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhcCC
Q 003397 325 QVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMS--SKGLMPNAVTYTTLIDAYGRAGK 402 (823)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~p~~~~~~~li~~~~~~g~ 402 (823)
..|++.|.+++|.++|++.... ...+.-|..+.++|+.-..-.-+..+ + +. +.+-.-+.. +
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e-~a~~~~~n~ed~~-------------d 318 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-E-LADEESGNEEDDV-------------D 318 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-h-hhhhcccChhhhh-------------h
Confidence 8888888888888888887764 23455566666666653221111111 1 11 111111111 2
Q ss_pred HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC------hhHHHHHHH
Q 003397 403 VNKALRLLNKMKESG-----------CAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPN------RITWNTMLT 465 (823)
Q Consensus 403 ~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~ll~ 465 (823)
++-...-|+.+...+ -+-++..|..-+ -+..|+..+.+..+.+..+. +.|. ...|..+.+
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 222233333332221 111333343322 23355666666667666553 2221 234666667
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003397 466 MCGNKGLDKYVNQVFREMKSCGFEPD---RDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGD 542 (823)
Q Consensus 466 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 542 (823)
.|...|+.+.|..+|+...+..++-- ..+|..-..+-.+..+++.|+++++..... |.... ..+...+.
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~ 467 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSE 467 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCC
Confidence 77777777777777777766543322 344555555555666777777766665532 11110 11122222
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 003397 543 WKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQE 622 (823)
Q Consensus 543 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 622 (823)
.-++. ++ -+...|...+..--..|-++..+.+++.+..-.+.... +.-..+..+-...-++++.++|++
T Consensus 468 pvQ~r-lh---------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq-ii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 468 PVQAR-LH---------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred cHHHH-HH---------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHc
Confidence 11110 00 12233444444444444555555555555444443222 222223333344456677777765
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCCHhHHHHHHHHHHHc
Q 003397 623 LQKHGYKPDL-VIFNSMLSICAK---NSMYDRANEMLHLILESGMQPNLVTYNNLMD--MYARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 623 ~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~ 696 (823)
-+..-.-|+. ..|+..+..+.+ ...++.|..+|+++++ |.+|...-+.-|+. .--+.|-...|+.++++....
T Consensus 537 gI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 537 GISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4444334444 367766665543 3367888889988888 44443332222222 122557788888888887653
Q ss_pred CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHcCCChhHHHHHHHHHHhC-CCCC
Q 003397 697 GGTPD--LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNT---FVSGYAGQGMFTEIDEVIKHMFQH-NCKP 770 (823)
Q Consensus 697 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~-~~~p 770 (823)
+++. ...||..|.--...=-......+|++.++. -||...-.+ ....-++.|.++.|..++....+. .+..
T Consensus 616 -v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 616 -VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 3332 256776665443333344456677777773 566544332 344556788888888888777653 2333
Q ss_pred CHHHHHHHHHHHHhcCChH
Q 003397 771 NELTYKIVVDGYCKARKYK 789 (823)
Q Consensus 771 ~~~~~~~l~~~~~~~g~~~ 789 (823)
+..-|...-.-=.++|+-+
T Consensus 693 ~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred ChHHHHHHHHHHHhcCCHH
Confidence 5666777777777888843
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=2.1e-12 Score=134.68 Aligned_cols=558 Identities=13% Similarity=0.080 Sum_probs=286.8
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC
Q 003397 197 KLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSR 276 (823)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 276 (823)
.++-.+...|+.|+..+|.++|.-||..|+.+.|- +|.-|.-+....+...|+.++.+....++. +.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~-Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDA-ENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccc-cCCC---------
Confidence 34556667788899999999999999999998888 999888777777888899999888777662 3322
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHh----CCCCC-C-------------cccHHHHHHHHHhcCCHHH
Q 003397 277 GLEFDEFTCSTVISACGREGLLNE---AKEFFAGLKL----EGYVP-G-------------TVTYNSLLQVFGKAGVYSE 335 (823)
Q Consensus 277 ~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~----~g~~~-~-------------~~~~~~li~~~~~~~~~~~ 335 (823)
.|...||..|..+|...||+.. .++.++.+.. .|+-- . ...-..++......|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788999999999999998765 2221221111 11100 0 0011122333333444444
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 336 ALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKE 415 (823)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 415 (823)
+++++..+....... .+..+++-... ......++.....+-.-.++..+|..++++-...|+++.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~~~---p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA---PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCcccccc---hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 444444432211000 11111222221 1122223332222221146777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003397 416 SGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTF 495 (823)
Q Consensus 416 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 495 (823)
.|++.+...|-.|+.+ .+....+..+++-|.+.|+.|+..|+...+..+.++|....+.... ....-.+...+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s----q~~hg~tAavr 305 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS----QLAHGFTAAVR 305 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc----chhhhhhHHHH
Confidence 7777776666666655 5666666677777777777777777766666666544422111110 00000111122
Q ss_pred HHHHHHHHhcCChHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--C-CCHHHHHH
Q 003397 496 NTLISAYGRCGSGVD-----ATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGF--K-PSETSFSL 567 (823)
Q Consensus 496 ~~li~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~-~~~~~~~~ 567 (823)
..+.++.....+.+. ....+....-.|+.....+|...+. ....|.-++..++...|..--. . .++..+..
T Consensus 306 saa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~ 384 (1088)
T KOG4318|consen 306 SAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA 384 (1088)
T ss_pred HHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHH
Confidence 222222111111111 1111111111233333333333222 2335666666666655543211 1 12333444
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHH----------------HCCCCC-
Q 003397 568 MLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQ----------------KHGYKP- 630 (823)
Q Consensus 568 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------------~~~~~~- 630 (823)
++.-|...-...-...++. + ...+.............+.....+ .+.+.+
T Consensus 385 ~lrqyFrr~e~~~~~~i~~-~------------~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 385 LLRQYFRRIERHICSRIYY-A------------GQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred HHHHHHHHHHhhHHHHHHH-H------------HHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccc
Confidence 4444333222111111111 0 000111001111111111111110 011111
Q ss_pred ---C---HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCh
Q 003397 631 ---D---LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKS--GGTPDL 702 (823)
Q Consensus 631 ---~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 702 (823)
. ...-+.++..+++.-+..+++..-+.....-+ ...|..|++-+...+..+.|..+.++.... .+..|.
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~ 528 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDL 528 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhccc
Confidence 0 00122334444444444444433222222111 145777888888888888888888877632 223445
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNR-GIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
.-+..+.+.+.+.+....+.++++++.+. -..|+ ..++.-+++.....|+.+...++++-+...|+.-+ .-|+.
T Consensus 529 ~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~ 604 (1088)
T KOG4318|consen 529 PLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWM 604 (1088)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceE
Confidence 55777788888888888888888888763 12222 33455666677778888887777777777776532 23445
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 003397 781 GYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 781 ~~~~~g~~~~A~~~~~~~~~ 800 (823)
...+.++...|++..+...+
T Consensus 605 vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 605 VHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred EEeeccchhhhhhcchHHHH
Confidence 56677888877777665543
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=5.4e-12 Score=131.65 Aligned_cols=578 Identities=13% Similarity=0.107 Sum_probs=338.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003397 174 LDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVML 253 (823)
Q Consensus 174 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 253 (823)
++..+|..++..|+..|+.+.|. +|..|.......+...|+.++.+..+.++.+.+. .|...||..|+
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLL 90 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHH
Confidence 57789999999999999999998 9999988877888999999999999999887776 68899999999
Q ss_pred HHHHhcCCC--HHHHHHHHHHHH----HCCCCCCHHHHHHHHHH--------------HHccCCHHHHHHHHHHHHhCCC
Q 003397 254 DVYGKMGRS--WDRILGLLDEMR----SRGLEFDEFTCSTVISA--------------CGREGLLNEAKEFFAGLKLEGY 313 (823)
Q Consensus 254 ~~~~~~~~~--~~~a~~~~~~m~----~~~~~~~~~~~~~ll~~--------------~~~~g~~~~A~~~~~~~~~~g~ 313 (823)
.+|...|+- ++.+.+.+..+. ..|+-....-+-..+.+ ..-.|-++.+++++..+
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~----- 165 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV----- 165 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC-----
Confidence 999999872 122222122221 22322212222111111 11122222223322222
Q ss_pred CCCcccHHH---HHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 003397 314 VPGTVTYNS---LLQVFGK-AGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVT 389 (823)
Q Consensus 314 ~~~~~~~~~---li~~~~~-~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 389 (823)
|...-++. +++-... ...+++-..+.+...+ .++..+|..+++.-...|+++.|..++.+|.+.|+..+.+-
T Consensus 166 -Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 166 -PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred -CcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 21111111 1222221 2234555555444444 48999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHc
Q 003397 390 YTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGN 469 (823)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 469 (823)
|-.|+-+ .++...++.+++-|.+.|+.|+..|+...+..+.++|....+ +.|. +....+.+-...-.-
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~s-q~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGS-QLAHGFTAAVRSAAC 309 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cccc-chhhhhhHHHHHHHh
Confidence 7777655 888999999999999999999999999888888886662222 1222 222222232222222
Q ss_pred cCCHHHHHHHH------------HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHH
Q 003397 470 KGLDKYVNQVF------------REMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTG---FTPCVTTYNAFL 534 (823)
Q Consensus 470 ~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li 534 (823)
.| ..|.+.+ ....-.|+.....+|...+. ....|+-++..++-..+..-- -.-++..|..++
T Consensus 310 rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 310 RG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred cc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 33 1122111 11111233333344443333 334677777777777665321 122455566666
Q ss_pred HHHHHcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH---hCCCCC-------hHHHHHH
Q 003397 535 NALARRGDWKAAESVIL--DMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIY---AGRIFP-------SWMLLRT 602 (823)
Q Consensus 535 ~~~~~~g~~~~a~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~-------~~~~~~~ 602 (823)
.-|.+.-+..-...++. +.... ..+......+.....+...-...+.+..... .....+ -....+.
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 66554433322222222 11111 1122222222222222211111111111110 111111 1122334
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHc
Q 003397 603 LILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILES--GMQPNLVTYNNLMDMYARA 680 (823)
Q Consensus 603 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 680 (823)
++..++..-+..++...-+.....- -...|..|++.+......+.|..+.+++... ....|...+..+.+...+.
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 4444444445555544333333321 2267899999999999999999999987643 2334566788999999999
Q ss_pred CCHhHHHHHHHHHHHcCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 003397 681 GKCWKAEEILKGILKSGG-TPD-LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDE 758 (823)
Q Consensus 681 g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 758 (823)
+....+.++++++.+.-. .++ ..++--+.......|+.+.-.++++-+...|+.- | .-++....+.++...|.+
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e---t-gPl~~vhLrkdd~s~a~e 617 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE---T-GPLWMVHLRKDDQSAAQE 617 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh---c-ccceEEEeeccchhhhhh
Confidence 999999999999986321 221 2344456666777888888888888887766643 2 334445567888899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHH
Q 003397 759 VIKHMFQHNCKPNELTYKIVVDGYCK--ARKYKEAMDFLSK 797 (823)
Q Consensus 759 ~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 797 (823)
..+...+. ++|.+.....+-+.+.+ ..+.+.+.++...
T Consensus 618 a~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~ 657 (1088)
T KOG4318|consen 618 APEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIP 657 (1088)
T ss_pred cchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcch
Confidence 88877643 45555544444444432 2344444444433
No 41
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.9e-11 Score=114.04 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003397 613 LQGMERAFQELQKHGYKPDLV-IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILK 691 (823)
Q Consensus 613 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 691 (823)
+.-|.+.|+..-+++...|.. --.++...+.-..++++.+-.++.+...-...|.+.+ .+..+++..|++.+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 445566666555555444432 3344555555556677777777666654333344444 45677777777777777777
Q ss_pred HHHHcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 003397 692 GILKSGGTPDLVSYN-TVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTY-NTFVSGYAGQGMFTEIDEVIKHMFQHNCK 769 (823)
Q Consensus 692 ~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 769 (823)
++....++ |..+|. .|.++|.++++.+-|++++-++-. .-+..++ ..+...|.+.+.+=-|.+.|..+...++.
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 66544334 334443 445677777777777766554432 2233333 33445666777766666667666654433
Q ss_pred C
Q 003397 770 P 770 (823)
Q Consensus 770 p 770 (823)
|
T Consensus 494 p 494 (557)
T KOG3785|consen 494 P 494 (557)
T ss_pred c
Confidence 3
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.4e-11 Score=121.05 Aligned_cols=276 Identities=12% Similarity=0.010 Sum_probs=189.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003397 489 EPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLM 568 (823)
Q Consensus 489 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 568 (823)
.-+......-.+-+...+++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+-.++.+. .+-...+|..+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3445555566666777788888888888777653 345556666666777777777776666666664 33355666666
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 003397 569 LNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMY 648 (823)
Q Consensus 569 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 648 (823)
.--|...|+..+|++. |.+....+.. -...|-.....|+-.|.-
T Consensus 319 g~YYl~i~k~seARry-----------------------------------~SKat~lD~~-fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRY-----------------------------------FSKATTLDPT-FGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHhcCcHHHHHH-----------------------------------HHHHhhcCcc-ccHHHHHHhHHhhhcchH
Confidence 6555555555555554 4443332111 234777888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003397 649 DRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEM 728 (823)
Q Consensus 649 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 728 (823)
|+|...+..+-+.-.. ...-+.-+.--|.+.++.+-|.++|.+.... .+-|+..++-+.-.....+.+.+|..+|+..
T Consensus 363 dQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 8888888777663111 1122333445577888888888888888765 2446677777777777788888888888877
Q ss_pred HHc--CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 729 TNR--GIRP----CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 729 ~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
+.. .+.+ -..+++.|..+|.+.+.+++|+..+++.+....+ +..++.+++-.|...|+++.|.+.+++++.+.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 631 1111 2345788888888888999999998888875433 78888888888888899999999999988888
Q ss_pred CCC
Q 003397 803 DSF 805 (823)
Q Consensus 803 ~~~ 805 (823)
|++
T Consensus 520 p~n 522 (611)
T KOG1173|consen 520 PDN 522 (611)
T ss_pred Ccc
Confidence 875
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-11 Score=120.98 Aligned_cols=194 Identities=11% Similarity=0.078 Sum_probs=138.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003397 602 TLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG 681 (823)
Q Consensus 602 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 681 (823)
.+...|....+-++....|+...+.+.. +..+|..-.+++.-.+++++|..-|+..+...+. +...|..+..+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHH
Confidence 3444555556666666777777766543 5566766677777778888888888888876543 5666777777777888
Q ss_pred CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHHH--HHHHHHHHcCCC
Q 003397 682 KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-------IFTY--NTFVSGYAGQGM 752 (823)
Q Consensus 682 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~--~~l~~~~~~~g~ 752 (823)
+++++...|++.+++ ++..+..|+.....+..+++++.|.+.|+..++ +.|+ ...+ ..++ .+.-.++
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l-~~qwk~d 518 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALL-VLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHh-hhchhhh
Confidence 888888888888775 555678888888888888888899888888876 3333 2221 1222 1223478
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 753 FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 753 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
+..|+++++++++.+++ ....|..|+......|+.++|++++++...+.
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888888888874433 45678888888888899999988888876554
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=1.4e-08 Score=102.95 Aligned_cols=513 Identities=11% Similarity=0.104 Sum_probs=310.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003397 283 FTCSTVISACGREGLLNEAKEFFAGLKLE-GYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGA 361 (823)
Q Consensus 283 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (823)
..|...+..+.++|++......|+..+.. -+......|...+......+-.+.+..+|++..+. +...-+..|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 35666677778899999999999887654 23334567888888888888899999999998874 44457778888
Q ss_pred HHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 003397 362 YVRAGFYEEGAALIDTMSSK------GLMPNAVTYTTLIDAYGRAGKVN---KALRLLNKMKESGCAPNV--CTYNAVLG 430 (823)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~li~ 430 (823)
+++.+++++|.+.+..+... ..+-+-..|.-+-+...+.-+.- ....+++.+... .+|. ..|..|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999998877643 12335566766666666544332 233444444432 3343 47889999
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccC----------------------CHHHHHHHHHHHHHCC-
Q 003397 431 MLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKG----------------------LDKYVNQVFREMKSCG- 487 (823)
Q Consensus 431 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~- 487 (823)
.|.+.|.+++|.++|++.+.. ...+.-|..+.++|..-. +++..+.-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999987764 223344444444443211 1122222233322211
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003397 488 ----------FEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTP------CVTTYNAFLNALARRGDWKAAESVIL 551 (823)
Q Consensus 488 ----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~ 551 (823)
-..+...|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-..|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0112223332222 2245566666777777653 111 23467888888888889999988888
Q ss_pred HHHhCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-----------------hHHHHHHHHHHhhhhh
Q 003397 552 DMQNKGFKPS---ETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFP-----------------SWMLLRTLILVNFKCR 611 (823)
Q Consensus 552 ~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~ 611 (823)
+..+..++-- ..+|..-...-.+..+++.|.++......-...+ +..++..+++..-..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8877644322 2233333444455666777777766663332221 1123334445555667
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHH-c--CCHhHHH
Q 003397 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNL-VTYNNLMDMYAR-A--GKCWKAE 687 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~--g~~~~A~ 687 (823)
-++....+|+.+.+..+. ++.........+..+.-++++.++|++-+..-.-|++ ..|+..+.-+.+ - ..++.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 778888888888776543 3333222333344566678888888777665333444 456665554442 2 2578888
Q ss_pred HHHHHHHHcCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 003397 688 EILKGILKSGGTPDLVS--YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC--IFTYNTFVSGYAGQGMFTEIDEVIKHM 763 (823)
Q Consensus 688 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 763 (823)
.+|++.++ |.+|...- |-.....--+.|-...|+.+|++.... +.+. ...|+..+.-....=-......+|+++
T Consensus 571 dLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 88888887 45554432 222222233467778888888886653 4443 245666665333222245677888888
Q ss_pred HhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHhh-cCCCCCHHHHH
Q 003397 764 FQHNCKPNEL---TYKIVVDGYCKARKYKEAMDFLSKIKE-RDDSFNDESVK 811 (823)
Q Consensus 764 ~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~ 811 (823)
++. -||.. ..-...+.=.+-|..+.|..++.-..+ .+|.-...-|+
T Consensus 649 Ie~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 649 IES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD 698 (835)
T ss_pred HHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH
Confidence 874 34432 234455666778999999988876665 44555555444
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4e-10 Score=109.57 Aligned_cols=366 Identities=11% Similarity=0.007 Sum_probs=212.8
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--
Q 003397 312 GYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVT-- 389 (823)
Q Consensus 312 g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-- 389 (823)
+...|...+-.....+-+.|..+.|++.|.+....- +..|...+....-..+.+. .......+.. |...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~----~~~l~~~l~~-~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEI----LSILVVGLPS-DMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHH----HHHHHhcCcc-cchHHH
Confidence 334455555555556667888889999888877541 2344433332222222222 2222222211 2111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--CChhHHHHHHHHH
Q 003397 390 YTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCS--PNRITWNTMLTMC 467 (823)
Q Consensus 390 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~ll~~~ 467 (823)
=-.+..++-...+.+++.+-.+.....|+..+...-+....+.....++|+|+.+|+++.+...- -|..+|..++-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY-- 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY-- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--
Confidence 11234555566678888888888888877766665566666677788899999999998876211 14456655543
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003397 468 GNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAE 547 (823)
Q Consensus 468 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 547 (823)
.+..+... .++.+-...--+-...|...+.+.|+-.++.++|..+|++.++.... ....|+.+..-|....+...|.
T Consensus 308 v~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 33322221 11111111101234457777888888888888888888888875422 4567777777888888887777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCC
Q 003397 548 SVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHG 627 (823)
Q Consensus 548 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 627 (823)
+-++...+-.
T Consensus 385 ~sYRrAvdi~---------------------------------------------------------------------- 394 (559)
T KOG1155|consen 385 ESYRRAVDIN---------------------------------------------------------------------- 394 (559)
T ss_pred HHHHHHHhcC----------------------------------------------------------------------
Confidence 7777766542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHH
Q 003397 628 YKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNT 707 (823)
Q Consensus 628 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 707 (823)
+.|-..|-.+.++|.-.+...-|+-.|+++.+..+ .|...|.+|+.+|.+.++.++|++.|......| ..+...+..
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 11444555666666666666666666666666543 266666666666666666666766666666554 224456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 708 VIKGFCRQGLMQEAMRMLYEMTN----RGIRPCI--FTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
|...|-+.++.++|...|++.++ .|..-+. ....-|..-+.+.+++++|..+.....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 66666666666666666666554 1222221 111223444455566666655554444
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.9e-11 Score=112.99 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHHhcCCHHHH
Q 003397 263 WDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGT------VTYNSLLQVFGKAGVYSEA 336 (823)
Q Consensus 263 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~li~~~~~~~~~~~A 336 (823)
-|+|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+.+++.+.+. ||. .+...|..-|...|-+|.|
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 488888888888753 334556677888899999999999999998875 333 2445577778899999999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003397 337 LSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPN----AVTYTTLIDAYGRAGKVNKALRLLNK 412 (823)
Q Consensus 337 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 412 (823)
+++|..+.+.+ ..-..+...|+..|-...+|++|+++-+++.+.+..+. ...|+-|...+....+++.|..++++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998754 23456778899999999999999999999988875544 34567777777778899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 003397 413 MKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDR 492 (823)
Q Consensus 413 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 492 (823)
..+.+.. ++..--.+.+.+...|+++.|++.++...+.+..--..+...|..+|.+.|+.++....+..+.+... ..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 8876432 44444566788899999999999999999875444456778888999999999999999999887643 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhC
Q 003397 493 DTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALAR---RGDWKAAESVILDMQNK 556 (823)
Q Consensus 493 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 556 (823)
..-..+........-.+.|..++.+-+.+ +|+...+..+|..... .|.+.+.+.++++|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33344444444455566676666555554 6899999999987654 34577777788888754
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3.7e-12 Score=129.61 Aligned_cols=297 Identities=10% Similarity=-0.026 Sum_probs=207.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChhHHHHH
Q 003397 507 SGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGF--KPSETSFSLMLNCYAKGGNLKGIRKI 584 (823)
Q Consensus 507 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~ 584 (823)
+..+|...|..+...- .-.......+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+.+.- +...
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 3445566665543332 11234445556666666666666666666655321 124455555554443211 1111
Q ss_pred HHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 003397 585 EKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQ 664 (823)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 664 (823)
+..-+-.........+..+..+|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+.++....+
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 222222222334455666666777777788888888888876322 5667887777788889999999999998874433
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003397 665 PNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFV 744 (823)
Q Consensus 665 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 744 (823)
+-..|..|+..|.++++++.|+-.|+++.+.+ +.+.+....+...+-+.|+.|+|+++++++...+- -|...--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHH
Confidence 44567778889999999999999999998864 33667777888889999999999999999987432 2444444556
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003397 745 SGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLT 814 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 814 (823)
..+...+++++|...++++.+. .| +...+..++..|.+.|+.+.|+..+--|.+.+|.-.....+..+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~k~~~ 633 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQIKAAI 633 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhhHHHHh
Confidence 6778889999999999999984 45 57788999999999999999999999999999998764444433
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=4.6e-11 Score=125.57 Aligned_cols=290 Identities=12% Similarity=0.029 Sum_probs=174.5
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003397 468 GNKGLDKYVNQVFREMKSCGFEPDR-DTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAA 546 (823)
Q Consensus 468 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 546 (823)
...|+++.|.+.+....+. .|+. ..+......+...|+.+.|.+++.+..+................+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3456666666666555443 2322 223333445555666666666666655432111122333335555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC
Q 003397 547 ESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH 626 (823)
Q Consensus 547 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 626 (823)
...++.+.+.. +-+...+..+.. .+...|++++|.+.+..+.+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~-----------------------------------~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEE-----------------------------------AYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHH-----------------------------------HHHHHhhHHHHHHHHHHHHHc
Confidence 66666666553 113334444444 444555555555556666655
Q ss_pred CCCCCHHHHH-HHHH---HHHccCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 003397 627 GYKPDLVIFN-SMLS---ICAKNSMYDRANEMLHLILESGMQ---PNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT 699 (823)
Q Consensus 627 ~~~~~~~~~~-~l~~---~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 699 (823)
+.. +...+. .-.. .....+..+++.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+..
T Consensus 217 ~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-- 293 (409)
T TIGR00540 217 GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-- 293 (409)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Confidence 433 222221 1111 112223333344455555543321 377788888889999999999999999998863
Q ss_pred CChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 003397 700 PDLVS---YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI---FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNEL 773 (823)
Q Consensus 700 ~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 773 (823)
||... ...........++.+.+.+.+++..+. .|+. ....++.+.|.+.|++++|.+.|+........|+..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 33321 122222334457788888888888774 4443 456789999999999999999999644444578888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 774 TYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 774 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
.+..++..+.+.|+.++|.+++++.+.
T Consensus 372 ~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 372 DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999999999998754
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=8.3e-14 Score=138.96 Aligned_cols=262 Identities=14% Similarity=0.103 Sum_probs=107.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 003397 497 TLISAYGRCGSGVDATKMFEDMMKTG-FTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKG 575 (823)
Q Consensus 497 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 575 (823)
.+...+.+.|++++|+++++...... ...+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777777777777775544332 1224444555555556677777777777777665322 33333333333 344
Q ss_pred CChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003397 576 GNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEML 655 (823)
Q Consensus 576 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 655 (823)
++.++|.+++....+. .++...+..++..+.+.++++++.+++
T Consensus 91 -----------------------------------~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 91 -----------------------------------GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred -----------------------------------cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 4445555555444333 235566777788888889999999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003397 656 HLILESG-MQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIR 734 (823)
Q Consensus 656 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 734 (823)
+.+.... ...+...|..+...+.+.|+.++|++.+++.++.. +.|....+.++..+...|+.+++.++++...+.. .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 8877532 34577788888888899999999999999998863 2256778888899999999999888888877752 4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 735 PCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 735 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
.|...+..+..+|...|+.++|+.++++..+.... |......+++++...|+.++|.++.+++..
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 45667788888999999999999999998875433 778888999999999999999998887764
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=7.6e-11 Score=123.17 Aligned_cols=284 Identities=10% Similarity=0.041 Sum_probs=176.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 003397 470 KGLDKYVNQVFREMKSCGFEPDRDT-FNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYN--AFLNALARRGDWKAA 546 (823)
Q Consensus 470 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 546 (823)
.|+++.|.+......+.. ..... |........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555443321 11222 222233335566666666666666543 22322221 223455556666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC
Q 003397 547 ESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH 626 (823)
Q Consensus 547 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 626 (823)
...++++.+.. +-+......+. ..|.+.|++++|..++..+.+.
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~-----------------------------------~~~~~~gdw~~a~~~l~~l~k~ 216 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAE-----------------------------------QAYIRTGAWSSLLDILPSMAKA 216 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHH-----------------------------------HHHHHHHhHHHHHHHHHHHHHc
Confidence 66666665543 12333444444 4444555555555556666555
Q ss_pred CCCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 003397 627 GYKPDL-------VIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT 699 (823)
Q Consensus 627 ~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 699 (823)
+...+. .+|..++.......+.+...++++..-+. .+.+......+...+...|+.++|.+++++..+. .
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~ 293 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--Q 293 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 433211 12223333333344455556666655432 2347778888899999999999999999998874 4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003397 700 PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIV 778 (823)
Q Consensus 700 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 778 (823)
++... .++.+....++.+++++.+++..+. .|+ ...+..+...|.+.|++++|.+.|+.+.+ ..|+...+..|
T Consensus 294 ~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~L 367 (398)
T PRK10747 294 YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWL 367 (398)
T ss_pred CCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHH
Confidence 44432 2334445668999999999998875 344 55678889999999999999999999998 46888888899
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcC
Q 003397 779 VDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 779 ~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
..++.+.|+.++|.+++++.+...
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999887643
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.9e-10 Score=111.24 Aligned_cols=221 Identities=10% Similarity=-0.004 Sum_probs=151.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHH
Q 003397 538 ARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGME 617 (823)
Q Consensus 538 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 617 (823)
.-.|+...|...|+..+.....++. .|..+...|....+.++....+.....-+.. +..+|..-..+++-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3456666666667666665433222 2555555666666666666666655443332 2334555556666678888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 003397 618 RAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSG 697 (823)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 697 (823)
.-|++.+...+. +...|-.+.-+..+.+.++++...|++.++.- +.-...|+.....+..++++++|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 889888876332 44455556556667889999999999998864 3367889999999999999999999999988642
Q ss_pred CC-----CChhH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 698 GT-----PDLVS--YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 698 ~~-----~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.. .+... --+++. +.-.+++..|..++++..+ +.|. ...|..|...-.+.|++++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 11211 112222 2234889999999999988 4444 56788899999999999999999999875
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=8.4e-10 Score=110.27 Aligned_cols=503 Identities=12% Similarity=0.064 Sum_probs=284.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHH
Q 003397 139 DLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSIL 218 (823)
Q Consensus 139 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 218 (823)
...++++-.....++.-|.-+-+.+..- ..++....++...+.-.|+++.|..+...-.-. ..|..+.....
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l------~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~ 89 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGL------TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAA 89 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhc------cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHH
Confidence 3444445444455666666655655442 147788888999999999999988887765433 34788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003397 219 HAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLL 298 (823)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 298 (823)
.++.+..++++|..++.+-.. ..+...|-.-=.+.... .+.+. ++.. .......+-.-.+.|....+.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~~l~---~n~~~----~~~~--~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDAANTLE---LNSAG----EDLM--INLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHhcccch---hhcchhhcchhhhceec---cCccc----cccc--ccchhceeeeeeehhhhhccH
Confidence 999999999999999874311 11111110000000000 01111 1111 111122222223456667778
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChhHHHHHHHHHHHcCCHHHHHHH
Q 003397 299 NEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNC----PPDSVTYNEVVGAYVRAGFYEEGAAL 374 (823)
Q Consensus 299 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~ 374 (823)
++|...|.+.... |...|.++...-.. ..-.+.+.++.+..... ..++.....+.....-...-++....
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 8888888877654 44434333222111 11112222222222110 11222222221111000000011111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 003397 375 IDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCS 454 (823)
Q Consensus 375 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 454 (823)
-.+-.-.+..-+......-.+-+...+++.+..++++.+.+.. ++....+-.-|.++...|+..+-..+=.++.+. .+
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP 309 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YP 309 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CC
Confidence 1101111233345555555666777788888888888877752 345556666666777888877777777777765 22
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003397 455 PNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFL 534 (823)
Q Consensus 455 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 534 (823)
-...+|-++.--|...|+..+|++.|.+....+ ..=...|..+...|.-.|..++|...+...-+. ++....-+--+.
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 256777777777777788888888887765432 111346777777788888888887777665542 111111222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHH
Q 003397 535 NALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQ 614 (823)
Q Consensus 535 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 614 (823)
--|.+.++.+.|.+.|.+..... +.|+...+-+.- .....+.+.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgv-----------------------------------vay~~~~y~ 431 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGV-----------------------------------VAYTYEEYP 431 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhh-----------------------------------eeehHhhhH
Confidence 45667788888888887766531 223333333333 333444455
Q ss_pred HHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 003397 615 GMERAFQELQKH----GYK--PDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEE 688 (823)
Q Consensus 615 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 688 (823)
+|...|+..... +.. --..+++.|..+|.+.+.+++|+..++..+....+ +..++.++...|...|+++.|.+
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHH
Confidence 555555543311 100 13346788888899999999999999998886544 88888999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHH
Q 003397 689 ILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
.|.+.+. +.|+..+-..++.
T Consensus 511 ~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 511 HFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHh--cCCccHHHHHHHH
Confidence 9998876 4666655554444
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=7.5e-11 Score=123.19 Aligned_cols=289 Identities=11% Similarity=0.114 Sum_probs=194.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHH
Q 003397 435 KGRSEEMMKILCDMKSSGCSPNRIT-WNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFN--TLISAYGRCGSGVDA 511 (823)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a 511 (823)
.|++++|.+.+....+.. .++.. +.....+..+.|+.+.+.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777776666544431 11222 222233446777788888888777664 34443222 335577788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHccCChhHHHHHHHHHHh
Q 003397 512 TKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLM-LNCYAKGGNLKGIRKIEKEIYA 590 (823)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 590 (823)
...++.+.+.. +-+......+...|.+.|+|++|.+++..+.+.+..++. ....+ ..++.
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~----------------- 233 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQQAWI----------------- 233 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHH-----------------
Confidence 88888887765 336777888888888888888888888888877544222 11110 01110
Q ss_pred CCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 003397 591 GRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTY 670 (823)
Q Consensus 591 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 670 (823)
.+........+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.. ++...
T Consensus 234 -----------~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l- 298 (398)
T PRK10747 234 -----------GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL- 298 (398)
T ss_pred -----------HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH-
Confidence 0000001111223333334443222 13467788888999999999999999999988843 34422
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003397 671 NNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ 750 (823)
Q Consensus 671 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 750 (823)
.++.+....++.+++++..++..+.. +-|...+..+...+.+.+++++|.+.|+.+.+ ..|+..++..+..++.+.
T Consensus 299 -~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 299 -VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRL 374 (398)
T ss_pred -HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc
Confidence 23344445699999999999998763 34667788899999999999999999999998 579999999999999999
Q ss_pred CChhHHHHHHHHHHh
Q 003397 751 GMFTEIDEVIKHMFQ 765 (823)
Q Consensus 751 g~~~~A~~~~~~~~~ 765 (823)
|+.++|.+++++...
T Consensus 375 g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 375 HKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998865
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.2e-10 Score=122.44 Aligned_cols=293 Identities=11% Similarity=0.048 Sum_probs=182.3
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHH
Q 003397 434 KKGRSEEMMKILCDMKSSGCSPNR-ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDR--DTFNTLISAYGRCGSGVD 510 (823)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~ 510 (823)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.+.+++.+..+.. |+. .........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 456777777776665553 2332 222333445666677777777777765542 332 233334666777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCChhHHHHHHHHHH
Q 003397 511 ATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFS-LMLNCYAKGGNLKGIRKIEKEIY 589 (823)
Q Consensus 511 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~ 589 (823)
|...++.+.+.. +-+..++..+...+.+.|++++|.+++..+.+.+.. +...+. .-..++ .+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~~l----------- 236 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IGLL----------- 236 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HHHH-----------
Confidence 888888877764 235667777778888888888888888888776543 222221 111111 0000
Q ss_pred hCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003397 590 AGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGY---KPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPN 666 (823)
Q Consensus 590 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 666 (823)
..+..++....+..+.+... +.+...+..+...+...|+.++|.+.+++..+......
T Consensus 237 -------------------~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 237 -------------------DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred -------------------HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00111111122222222211 12677888888888899999999999999888643321
Q ss_pred HHH-HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003397 667 LVT-YNNLMDMYARAGKCWKAEEILKGILKSGGTPDL--VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTF 743 (823)
Q Consensus 667 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 743 (823)
... ...........++.+.+.+.+++..+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 111 1111222234577888888888887652 2244 56668889999999999999999954433357888888899
Q ss_pred HHHHHcCCChhHHHHHHHHHHh
Q 003397 744 VSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 744 ~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
...+.+.|+.++|.+++++.+.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=6.2e-09 Score=105.88 Aligned_cols=470 Identities=13% Similarity=0.106 Sum_probs=236.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 003397 285 CSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVR 364 (823)
Q Consensus 285 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (823)
|..++++| ..+++...+++.+.+.+. +.-...+.....-.+...|+-++|....+.-...++ -+.+.|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhh
Confidence 33344433 567777777777776663 232344444444455566777777777666655432 245566666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003397 365 AGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKI 444 (823)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 444 (823)
..++++|++.|......+.. |...+.-+.-.-.+.|+++.....-..+.+.. ......|..++.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666433 56666655555556667766666666665542 12345566666666677777777777
Q ss_pred HHHhhhCC-CCCChhHHHHHHHH------HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003397 445 LCDMKSSG-CSPNRITWNTMLTM------CGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFED 517 (823)
Q Consensus 445 ~~~~~~~~-~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 517 (823)
++...+.. -.|+...+...... ....|..+.|.+.+..-... +.-....-..-...+.+.++.++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 77766543 23455444443322 23345555555444433221 111112222334445566666666666666
Q ss_pred HHhCCCCCCHHHHHHHH-HHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 003397 518 MMKTGFTPCVTTYNAFL-NALARRGDWKAAE-SVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFP 595 (823)
Q Consensus 518 ~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 595 (823)
++.. .||..-|...+ .++.+..+.-++. .+|....+. + |.......+--......+
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~ee------------------ 302 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEE------------------ 302 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcch------------------
Confidence 6654 24444443333 2332222222222 333333332 1 111100000000111111
Q ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH----cC---------
Q 003397 596 SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILE----SG--------- 662 (823)
Q Consensus 596 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~--------- 662 (823)
-.+....++..+.+.|+.+ ++..+...|-.-...+--.++.-.+.. .|
T Consensus 303 ----------------l~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 303 ----------------LKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred ----------------hHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 1112223334444444321 233333333221111111111111110 00
Q ss_pred -CCCCHH--HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003397 663 -MQPNLV--TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIF 738 (823)
Q Consensus 663 -~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 738 (823)
-.|... ++..+...|-+.|+++.|...++..+.. .|+. ..|..-.+.+...|++++|..++++..+.+ .+|..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 023332 3345566677788888888888877654 4443 445555677777888888888888777642 23433
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--C----HHHHHHH--HHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP--N----ELTYKIV--VDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+-.--+.-..++++.++|.++.....+.|..- | ...|..+ +.+|.+.|++-+|++=+..+....-+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~ 514 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKT 514 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 32233344456677788888777776655310 1 1233322 34577777777777666665544433
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2e-11 Score=124.41 Aligned_cols=283 Identities=14% Similarity=0.084 Sum_probs=212.7
Q ss_pred ChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCCHHHHHH
Q 003397 191 RHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMG--LSPTLVTYNVMLDVYGKMGRSWDRILG 268 (823)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~~a~~ 268 (823)
+..+|...|..++..- ..+..+..-+..+|...+++++|+.+|+.+++.. ..-+...|.+.|=-+.+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 4578888888866543 3355777888899999999999999999998752 23467778777654432 23333
Q ss_pred HHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003397 269 LLDE-MRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVP-GTVTYNSLLQVFGKAGVYSEALSILKEMEDN 346 (823)
Q Consensus 269 ~~~~-m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 346 (823)
.+.+ +.... +....+|.++.++|.-+++.+.|++.|++.... .| ..++|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3332 33332 456789999999999999999999999998876 44 5788888888899999999999999988764
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003397 347 NCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYN 426 (823)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 426 (823)
. +.+-.+|--+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|++++++....... |...-.
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 2 122334445677888999999999999998887655 7777777888888999999999999998876544 455555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 003397 427 AVLGMLGKKGRSEEMMKILCDMKSSGCSPN-RITWNTMLTMCGNKGLDKYVNQVFREMKSCG 487 (823)
Q Consensus 427 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 487 (823)
..+..+...++.++|+..++++++. .|+ ...+..+...|.+.|+.+.|..-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5666777888999999999998875 454 4556666678888888888888877776653
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=4.2e-13 Score=133.93 Aligned_cols=262 Identities=14% Similarity=0.127 Sum_probs=99.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003397 462 TMLTMCGNKGLDKYVNQVFREMKSCG-FEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARR 540 (823)
Q Consensus 462 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 540 (823)
.+...+.+.|+++.|.++++...... ...+...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677889999999999996654443 2344555666666777899999999999999986543 56667777776 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHH
Q 003397 541 GDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAF 620 (823)
Q Consensus 541 g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 620 (823)
+++++|.+++.+..+.. ++...+...+..+...++++.+..+ +
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~-----------------------------------l 133 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEEL-----------------------------------L 133 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHH-----------------------------------H
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHH-----------------------------------H
Confidence 99999999988765542 3455555666666666665554444 4
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 003397 621 QELQKHG-YKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT 699 (823)
Q Consensus 621 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 699 (823)
+.+.... ...+...|..+...+.+.|+.++|++.++++++..+. |......++..+...|+.+++.++++...+.. +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 4433321 2346677888888888899999999999998886543 57778888888888899888888888877653 4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 700 PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 700 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.|...+..+..+|...|+.++|+.+|++..+. .+-|..+...++.++...|+.++|.++.+++.+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 46667788888899999999999999998874 233677778888999999999999988887754
No 58
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.6e-08 Score=103.60 Aligned_cols=561 Identities=12% Similarity=0.163 Sum_probs=297.1
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCC--------CCCCHHHHHHHHHH
Q 003397 149 VSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEK--------YSLDVRAYTSILHA 220 (823)
Q Consensus 149 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~ 220 (823)
--|+-+.|++..+.+ .+..+|..|.+.|.+.++++.|.-.+..|.... ...+...-..+...
T Consensus 740 tiG~MD~AfksI~~I----------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL 809 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI----------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL 809 (1416)
T ss_pred EeccHHHHHHHHHHH----------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH
Confidence 346667776655554 256789999999999988888887777664311 00011111222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003397 221 YSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNE 300 (823)
Q Consensus 221 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 300 (823)
-...|.+++|+.+|.+.++. ..|=..|...|+ |++|+++-+.--.-. -..||.....-+-..++.+.
T Consensus 810 AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~-w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGM-WSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhccc-HHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 34668888888888887763 223333444455 788877765422211 12356666666667788888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003397 301 AKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSS 380 (823)
Q Consensus 301 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (823)
|+++|++.-.. -..++..|. .+.....++.+.+. |...|.-....+-..|+++.|+.+|.....
T Consensus 877 AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 88888753211 111111111 11122222222222 334444455555556777777777766543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHH
Q 003397 381 KGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITW 460 (823)
Q Consensus 381 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 460 (823)
|-.++...|-+|+.++|-++-++-. |......|.+.|-..|++.+|..+|.+.. ++
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------af 996 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AF 996 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HH
Confidence 4456666677777777777665532 55555667777777777777777776653 22
Q ss_pred HHHHHHHHccCCH---------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------H
Q 003397 461 NTMLTMCGNKGLD---------------KYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFE--------D 517 (823)
Q Consensus 461 ~~ll~~~~~~~~~---------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~ 517 (823)
...|+.|..++.- -.|-++|++. |. -+..-+..|-+.|.+.+|+++-- +
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 3333333222221 1222223221 10 11122335666777776665421 1
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCC-CC
Q 003397 518 MMKTG--FTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGR-IF 594 (823)
Q Consensus 518 ~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~ 594 (823)
++... -..|....+.-.+.++...++++|..++...++ |...+..| +..+..-..++.+.|.... ..
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhHHHHHhcCcCcCCC
Confidence 11122 234667777778888888999999988876654 23333333 3334444444444442221 22
Q ss_pred Ch----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH---------HHH----HH
Q 003397 595 PS----WMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRAN---------EML----HL 657 (823)
Q Consensus 595 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---------~~~----~~ 657 (823)
+. ..++..+...+.+.|.+..|-+-|.+.-.+ ...+.++.+.|+.++-. ++| +-
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANy 1209 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANY 1209 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhh
Confidence 22 235566777778888888877777655432 12345555666655321 111 11
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003397 658 ILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI 737 (823)
Q Consensus 658 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 737 (823)
+.....+.+..+...++..|-+..-++.--.+|+..... .+.-|..+-. ..|-+++|.+.+.++..++. ..
T Consensus 1210 LQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~--~~ 1280 (1416)
T KOG3617|consen 1210 LQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKNM--ST 1280 (1416)
T ss_pred hhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcc--hH
Confidence 222334455555555555555443333333333222111 1111111111 12334555555555544321 11
Q ss_pred HHHHHHH----------HHH-HcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 738 FTYNTFV----------SGY-AGQGMFTEIDEVIKHMFQHNCKPN----ELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 738 ~~~~~l~----------~~~-~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
..++.|- ... ....+..+.++-...|++...-|+ ...|..|+..|....++..|.+.++++..+.
T Consensus 1281 t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1281 TGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 1122221 111 112255566666666765433332 4578889999999999999999999999999
Q ss_pred CCCCHH
Q 003397 803 DSFNDE 808 (823)
Q Consensus 803 ~~~~~~ 808 (823)
|..+-.
T Consensus 1361 p~~~~s 1366 (1416)
T KOG3617|consen 1361 PNVDLS 1366 (1416)
T ss_pred Cccchh
Confidence 887543
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1.2e-08 Score=95.75 Aligned_cols=458 Identities=13% Similarity=0.048 Sum_probs=264.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 003397 288 VISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGF 367 (823)
Q Consensus 288 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 367 (823)
+..++...|++++|...+..+.... .++...+-.|..++.-.|.+.+|..+-.... .+.-.-..++..--+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCc
Confidence 4455667888888888888776643 5566666667777777888888887765432 233334445555556777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHH
Q 003397 368 YEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNA-VLGMLGKKGRSEEMMKILC 446 (823)
Q Consensus 368 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~ 446 (823)
-++...+-+.+... ..--.+|.......-.+++|+++++++...+ |+....|. +.-+|.+..-++-+.++++
T Consensus 137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 77766666665543 1222334444444456788888888887653 34444443 3346677777888888877
Q ss_pred HhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhC
Q 003397 447 DMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRC-----GSGVDATKMFEDMMKT 521 (823)
Q Consensus 447 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~ 521 (823)
-.... ..-+....|.......+.-+-..|.+-.+++.+.+-.. | ..+...++. .+-+.|++++-.+.+.
T Consensus 210 vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 210 VYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 76654 22234444444433333333333444444444332111 1 122223332 3556777777666653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-c-cC---ChhHHHHHHHHHHhCCCCCh
Q 003397 522 GFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYA-K-GG---NLKGIRKIEKEIYAGRIFPS 596 (823)
Q Consensus 522 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~-~~---~~~~a~~~~~~~~~~~~~~~ 596 (823)
-...--.|+--|.+.++.++|..+.+++.- ..|-......++.+-. + .| ...-|++.+..+-.+...-+
T Consensus 284 ----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 284 ----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred ----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 223344556667888999999888776632 2333333333332211 1 11 22335555555544444444
Q ss_pred HHHHH-HHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 003397 597 WMLLR-TLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTY-NNLM 674 (823)
Q Consensus 597 ~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 674 (823)
...-+ .++..++-..++++....++.+...-...|...+ .+.++++..|++.+|.++|-++....++ |..+| ..|.
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LA 435 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLA 435 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHH
Confidence 43333 3444555666788888777777665444344444 4678888999999999999877655554 55555 4556
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 003397 675 DMYARAGKCWKAEEILKGILKSGGTPDLVSY-NTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMF 753 (823)
Q Consensus 675 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 753 (823)
.+|.++|..+-|.+++-++.. ..+..+. -.+..-|.+.+.+=-|.+.|+.+.. ..|+...|. |+-
T Consensus 436 rCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe---------GKR 501 (557)
T KOG3785|consen 436 RCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE---------GKR 501 (557)
T ss_pred HHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC---------Ccc
Confidence 778899999998887765532 2233333 3345678888888888888887766 567776664 333
Q ss_pred hHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 003397 754 TEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKAR 786 (823)
Q Consensus 754 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 786 (823)
.....+|..+....-.| -......++..+...+
T Consensus 502 GACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~ 535 (557)
T KOG3785|consen 502 GACAGLFRQLANHKTDPIPISQMREVVHLLRMKP 535 (557)
T ss_pred chHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCC
Confidence 33344555555433333 1334445555554444
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.45 E-value=5.5e-08 Score=101.29 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 003397 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGY 747 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~ 747 (823)
.|....+.+.+.++.++|...+.+..+. .......|......+...|.+++|.+.|..... +.|+ ..+..++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 4566777888999999999988888765 244567777778888899999999999999887 6677 45678899999
Q ss_pred HcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHH
Q 003397 748 AGQGMFTEIDE--VIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKR 812 (823)
Q Consensus 748 ~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 812 (823)
...|+..-|.. ++..+++.++. |...|..|+..+.+.|+.++|.+.|..+.++.+.++-.-+..
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSN 794 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccc
Confidence 99998877777 99999986544 899999999999999999999999999999998887655443
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=7.2e-08 Score=98.36 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=92.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKPDLV-IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
.+.-++..+...|+++.|...++...++ .|+.. .|..-...+...|++++|..++++..+... +|...-..-..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHH
Confidence 3445677788889999999999888876 55543 666667888899999999999999988653 4655554566666
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCChh--------HHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 003397 678 ARAGKCWKAEEILKGILKSGGTPDLV--------SYNTV--IKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
.++++.++|.++.....+.|. +.. +|-.+ ..+|.++|++.+|++-|..+..
T Consensus 450 LrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 788999999999988887764 221 12211 3567788888888877766554
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.1e-09 Score=104.99 Aligned_cols=285 Identities=14% Similarity=0.141 Sum_probs=167.0
Q ss_pred CCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003397 435 KGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKM 514 (823)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 514 (823)
.|++.+|.+++.+-.+.+-. ....|..-..+.-+.|+.+.+..++.+..+..-.++...+..........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67888888888776665433 23344445566777888888888888887763345556666777778888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHccCChhHHHHHHHH
Q 003397 515 FEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSET-------SFSLMLNCYAKGGNLKGIRKIEKE 587 (823)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~ 587 (823)
++++.+.+. .+........++|.+.|+|.....++.+|.+.+.--++. ++..+++-....+..++....
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~--- 251 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW--- 251 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH---
Confidence 888887653 367778888889999999999999999998887654433 233333322222222222112
Q ss_pred HHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 003397 588 IYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNL 667 (823)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 667 (823)
++....+ .+.++..-.+++.-+.++|+.++|.++.++..+.+..+..
T Consensus 252 --------------------------------W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 252 --------------------------------WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred --------------------------------HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 2221111 1223444445555555666666666666666555444331
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
...-.+.+-++...=++..++..+. .+-++..+.+|...|.+++.|.+|.+.|+...+ ..|+..+|+.+.+++
T Consensus 299 ----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~ 371 (400)
T COG3071 299 ----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADAL 371 (400)
T ss_pred ----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHH
Confidence 1112233445555555555544433 122334555555556666666666666655554 345555666666666
Q ss_pred HcCCChhHHHHHHHHHH
Q 003397 748 AGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 748 ~~~g~~~~A~~~~~~~~ 764 (823)
.+.|+.++|.+..++.+
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 66666666555555554
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=8.5e-10 Score=102.34 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHHHccCCHHH
Q 003397 225 GKYEKAISLFEKVKEMGLSPTLVTYN-VMLDVYGKMGRSWDRILGLLDEMRSR-GLEFD--EFTCSTVISACGREGLLNE 300 (823)
Q Consensus 225 g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~~a~~~~~~m~~~-~~~~~--~~~~~~ll~~~~~~g~~~~ 300 (823)
.+.++|++.|-+|.+. .|..+..+ +|-+.|-+.|. .|+|+++.+.+.++ ++..+ ....-.|..-|...|-++.
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGE-vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcch-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4555666666666552 23222222 33333333343 56666666555543 11111 1133445566888999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHH
Q 003397 301 AKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDS----VTYNEVVGAYVRAGFYEEGAALID 376 (823)
Q Consensus 301 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~ 376 (823)
|+++|..+.+.| .--.....-|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999988754 223446677899999999999999999999877533322 234445555556788999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCC
Q 003397 377 TMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPN 456 (823)
Q Consensus 377 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 456 (823)
+..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.. ++
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 98887543 4444556677888999999999999999998665556778889999999999999999999988763 34
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 003397 457 RITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGR---CGSGVDATKMFEDMMK 520 (823)
Q Consensus 457 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~ 520 (823)
...-..+........-.+.|..++.+-+.. .|+...+..+|..... .|...+.+..++.|+.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 444445555444445556666666655554 6899999999987654 3345555666666664
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=5.1e-08 Score=93.69 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=186.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003397 488 FEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPC-VTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFS 566 (823)
Q Consensus 488 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 566 (823)
++-+......+...+...|+.++|...|+...... |+ ..........+.+.|+++....+...+.... +-....|.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 34455666667777777777777777777665432 21 1112222223345566666555555554321 00111111
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003397 567 LMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNS 646 (823)
Q Consensus 567 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 646 (823)
.-. ......++++.|..+-++.++.+.. +...+-.-...+...+
T Consensus 305 V~~-----------------------------------~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 305 VHA-----------------------------------QLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE 348 (564)
T ss_pred hhh-----------------------------------hhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence 111 1122334555666666666655322 4455655567778899
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhc-CCHHHHHHH
Q 003397 647 MYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVI-KGFCRQ-GLMQEAMRM 724 (823)
Q Consensus 647 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~~~A~~~ 724 (823)
+.++|.-.|+.++...+ -+..+|..|+..|...|++.+|.-.-+...+. +..+..+...+. ..+... ..-++|.++
T Consensus 349 R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999999988653 37899999999999999999999888877654 344555555553 333322 335789999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 003397 725 LYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 725 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 803 (823)
+++.+. +.|+ ....+.+...|...|..++++.++++.+. ..||....+.|++.+...+.+.+|++.|..++.++|
T Consensus 427 ~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 427 AEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 988877 5677 34567888899999999999999999987 568999999999999999999999999999999999
Q ss_pred CCC
Q 003397 804 SFN 806 (823)
Q Consensus 804 ~~~ 806 (823)
++.
T Consensus 503 ~~~ 505 (564)
T KOG1174|consen 503 KSK 505 (564)
T ss_pred cch
Confidence 963
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=4.4e-09 Score=101.07 Aligned_cols=287 Identities=16% Similarity=0.207 Sum_probs=168.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003397 365 AGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKI 444 (823)
Q Consensus 365 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 444 (823)
.|++..|+++..+-.+.+-.| ...|..-+.+.-..|+.+.+-.++.+.-+.--.++...+-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455555555555555544332 3344444455555555666655555555442233444444555555555555555555
Q ss_pred HHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 003397 445 LCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDR-------DTFNTLISAYGRCGSGVDATKMFED 517 (823)
Q Consensus 445 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 517 (823)
+.++.+.+.. +........++|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555554322 3444455555556666666666666555555543332 3455555555555555554555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChH
Q 003397 518 MMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSW 597 (823)
Q Consensus 518 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 597 (823)
...+ .+.+...-..++.-+.+.|+.++|.++..+..+++..++.. . +-.+.+.++...-.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~--------------- 314 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLI--------------- 314 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHH---------------
Confidence 5432 23456666777777888888888888888887776655511 1 11233333333222
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
+..+...+.. .-+...+.++...|.+++.+.+|.+.|+..++. .|+..+|+.+.+++
T Consensus 315 --------------------k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~ 371 (400)
T COG3071 315 --------------------KAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADAL 371 (400)
T ss_pred --------------------HHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 2222222221 224467778888888888888888888877774 47888888888888
Q ss_pred HHcCCHhHHHHHHHHHHHc
Q 003397 678 ARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~ 696 (823)
.+.|+..+|.+++++....
T Consensus 372 ~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 372 DQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHcCChHHHHHHHHHHHHH
Confidence 8889888888888887643
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.7e-08 Score=101.65 Aligned_cols=149 Identities=14% Similarity=0.086 Sum_probs=81.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH--------HHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003397 647 MYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILK--------GILKSGGTPDLVSYNTVIKGFCRQGLM 718 (823)
Q Consensus 647 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 718 (823)
.+.+|.+++...-+....-...+...++......|+++.|++++. .+.+.+..| .+..++...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 455666666665554333233444555566667777777777777 444433333 3344555666666665
Q ss_pred HHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003397 719 QEAMRMLYEMTNR--GIRPCIF----TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 719 ~~A~~~~~~m~~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
+.|..++.+.+.. .-.+... ++.-++..-.+.|+-++|...++++.+.+. +|..+...++.+|++- +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhc-CHHHHH
Confidence 5566665555431 0111112 222233333456777777777777776432 3566666777777664 556666
Q ss_pred HHHHHHh
Q 003397 793 DFLSKIK 799 (823)
Q Consensus 793 ~~~~~~~ 799 (823)
.+-+.+.
T Consensus 512 ~l~k~L~ 518 (652)
T KOG2376|consen 512 SLSKKLP 518 (652)
T ss_pred HHhhcCC
Confidence 6655544
No 67
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4e-07 Score=97.19 Aligned_cols=545 Identities=12% Similarity=0.183 Sum_probs=270.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003397 214 YTSILHAYSKAGKYEKAISLFEKVKEMG---LSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVIS 290 (823)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 290 (823)
+-.+.+.|-++|-++.|++.|..+.... +..+...=..++.-+.+.. ++.+.+.++.|...++.-+..+...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~ls--ve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLS--VEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5567777888888888888777764421 0001111112333344332 5778888888888887777777776666
Q ss_pred HHHccCCHHHHHHHHHHHHhC-----------CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH------------hC-
Q 003397 291 ACGREGLLNEAKEFFAGLKLE-----------GYVPGTVTYNSLLQVFGKAGVYSEALSILKEME------------DN- 346 (823)
Q Consensus 291 ~~~~~g~~~~A~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~------------~~- 346 (823)
-|...=-.+...++|+..+.. ++..|..+....|.+-|+.|++.+..++.++-- +.
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 666665566666666665432 134455555667788888888877777665421 11
Q ss_pred --------------CCCCChhHHH------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH------------HHH
Q 003397 347 --------------NCPPDSVTYN------EVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYT------------TLI 394 (823)
Q Consensus 347 --------------~~~~~~~~~~------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~------------~li 394 (823)
++.+|...|- ..|..|.+.=+....-.+...+..-.+. ....-+ -|.
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhccCChHHHH
Confidence 1111111110 1222232222111111111111111111 000111 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH-H---HHH-----H-hhhC-----------CC
Q 003397 395 DAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMM-K---ILC-----D-MKSS-----------GC 453 (823)
Q Consensus 395 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~---~~~-----~-~~~~-----------~~ 453 (823)
.-.-+.+++..-...++.....|.. |..++|+|...|...++-.+-. + .++ + ..++ |-
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 2233344444455555556666655 6666666666655433211100 0 000 0 0000 00
Q ss_pred ------------------------CCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCC
Q 003397 454 ------------------------SPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFE--PDRDTFNTLISAYGRCGS 507 (823)
Q Consensus 454 ------------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~ 507 (823)
+.|...|..++. .. -.--..+.+...+.+++ .|+.-...-+.++...+-
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~---e~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN---EE--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh---cc--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 112222222211 00 01113344444333221 233344444555555555
Q ss_pred hHHHHHHHHHHHhCC--CCCCHHHHHHH---------------------------HHHHHHcCCHHHHHHHHHHHHhCCC
Q 003397 508 GVDATKMFEDMMKTG--FTPCVTTYNAF---------------------------LNALARRGDWKAAESVILDMQNKGF 558 (823)
Q Consensus 508 ~~~a~~~~~~~~~~~--~~~~~~~~~~l---------------------------i~~~~~~g~~~~a~~~~~~m~~~~~ 558 (823)
..+-+++++++.-.. +.-+...-|.| ......++-+++|..+|++..
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~---- 1075 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD---- 1075 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc----
Confidence 566666665554221 11111111222 223344455566666665542
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 559 KPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSM 638 (823)
Q Consensus 559 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 638 (823)
.+......++.- -+.++.|.++.+.. .....+..++.+....|.+.+|.+-|-+. -|+..|..+
T Consensus 1076 -~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eV 1139 (1666)
T KOG0985|consen 1076 -MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEV 1139 (1666)
T ss_pred -ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHH
Confidence 233333333332 23444444443333 12345666777777777777777665432 266778888
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003397 639 LSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLM 718 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 718 (823)
++...+.|.+++-.+++..+.+..-+|...+ .|+.+|++.+++.+-.+++. .||......+.+-|...|.+
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhh
Confidence 8888888888888888887777665555544 67788888887776655542 44555555555555555555
Q ss_pred HHHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003397 719 QEAMRMLYEMTNR--------------------GIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIV 778 (823)
Q Consensus 719 ~~A~~~~~~m~~~--------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 778 (823)
+.|.-+|...-.- .-.-+..||.....+|...+.+. +.+|...++-....-...|
T Consensus 1211 ~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr-----lAQiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1211 EAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR-----LAQICGLNIIVHADELEEL 1285 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh-----HHHhcCceEEEehHhHHHH
Confidence 5555444322110 00112345555555554433322 1223222233345556778
Q ss_pred HHHHHhcCChHHHHHHHHHHhhc
Q 003397 779 VDGYCKARKYKEAMDFLSKIKER 801 (823)
Q Consensus 779 ~~~~~~~g~~~~A~~~~~~~~~~ 801 (823)
+..|-..|-++|-+.+++..+.+
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhch
Confidence 88888888888888887776544
No 68
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.8e-06 Score=92.32 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003397 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSG 746 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 746 (823)
...|..+..+-.+.|.+.+|++-|-+. -|+..|.-+++...+.|.+++-.+++.-..++.-.|... ..|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345666666666667766666655332 255666677777777777777777666555543334332 345556
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003397 747 YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
|.+.+++.+.++++ ..||......+++-|...|.++.|.
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAk 1214 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAK 1214 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHH
Confidence 66666655544432 2234444444444444444444443
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=6.3e-10 Score=108.66 Aligned_cols=203 Identities=10% Similarity=0.032 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003397 597 WMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDM 676 (823)
Q Consensus 597 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 676 (823)
...+..+...+...|++++|...+++..+... .+...+..+...|...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 34556677788888899999999998877643 25678888889999999999999999999987543 66778888999
Q ss_pred HHHcCCHhHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH
Q 003397 677 YARAGKCWKAEEILKGILKSGG-TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTE 755 (823)
Q Consensus 677 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 755 (823)
+...|++++|.+.++++.+... ......+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987432 2234567778889999999999999999998842 2245678889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 003397 756 IDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 756 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 803 (823)
|...++++.+.. ..+...+..++..+...|+.++|..+.+.+....|
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999998762 33567777888999999999999999988876543
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=1.1e-07 Score=100.04 Aligned_cols=260 Identities=14% Similarity=0.100 Sum_probs=160.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc----
Q 003397 290 SACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRA---- 365 (823)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 365 (823)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3466789999999888775544 33335566667788888899999999999988875 23334444444444222
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003397 366 -GFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKV-NKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMK 443 (823)
Q Consensus 366 -g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 443 (823)
.+.+....+++++.+.- |.......+.-.+.....+ ..+...+..+..+|+++ +|+.+-..|....+.+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 25677778888876653 3322222222122221122 34555566677777653 55566666665555555555
Q ss_pred HHHHhhhC----C----------CCCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003397 444 ILCDMKSS----G----------CSPNR--ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGS 507 (823)
Q Consensus 444 ~~~~~~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 507 (823)
++...... + -.|.. .++..+...|...|+.+.|.++.+..++.. +.....|..-.+.+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 55554322 1 12233 233445566777888888888888777763 2235667777777778888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 003397 508 GVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGF 558 (823)
Q Consensus 508 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 558 (823)
+.+|.+.++........ |-.+-+.....+.+.|+.++|.+++......+.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 88888888777765433 556666666777778888888887777766543
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.5e-07 Score=95.06 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003397 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLH--------LILESGMQPNLVTYNNLMDMYARAGKC 683 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 683 (823)
...++..++...-+....-...+.-.+++.....|+++.|++++. .+.+.+..| .+...+...|.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 466777777777766544445677777888889999999999998 555544444 4555778888899998
Q ss_pred hHHHHHHHHHHHc--CCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 003397 684 WKAEEILKGILKS--GGTPDL----VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 684 ~~A~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 757 (823)
+.|..++++.+.- ...+.. .++.-++..-.+.|+.++|..+++++.+. ..+|..+...++.+|++. +.+.|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 8888888887631 001111 23333444456789999999999999985 356788899999999876 568888
Q ss_pred HHHHHHH
Q 003397 758 EVIKHMF 764 (823)
Q Consensus 758 ~~~~~~~ 764 (823)
.+-+.+.
T Consensus 512 ~l~k~L~ 518 (652)
T KOG2376|consen 512 SLSKKLP 518 (652)
T ss_pred HHhhcCC
Confidence 7766653
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=7.7e-07 Score=93.04 Aligned_cols=438 Identities=13% Similarity=0.031 Sum_probs=218.5
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHH
Q 003397 276 RGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTY 355 (823)
Q Consensus 276 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 355 (823)
..+..|...|..+.-++...|+++.+-+.|++....- .-....|+.+...|...|.-..|..++++-....-.|+..+-
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3344566667777667777777777777777665431 223456666666777777777777777665443222332222
Q ss_pred HHHH-HHHH-HcCCHHHHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 003397 356 NEVV-GAYV-RAGFYEEGAALIDTMSSK--G--LMPNAVTYTTLIDAYGRA-----------GKVNKALRLLNKMKESGC 418 (823)
Q Consensus 356 ~~li-~~~~-~~g~~~~a~~~~~~~~~~--~--~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~ 418 (823)
-.++ +.|. +.+.+++++....+..+. + -......|..+.-+|... ....++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222 2222 245556666555555441 1 011223333333333321 113445555555555432
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 419 APNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTL 498 (823)
Q Consensus 419 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 498 (823)
. |......+.--|...++++.|++..++..+.+..-+...|..+.-.+...+++.+|..+.+...+.- ..|......-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 2 2222222333455556666666666666665445566666666666666666666666665554320 1111111111
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccC
Q 003397 499 ISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNK--GFKPSETSFSLMLNCYAKGG 576 (823)
Q Consensus 499 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~ 576 (823)
+..-...++.++++.....++.. |... ......++-....++...+.-. ...-...++..+..-....+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 11222345555555444443321 0000 0000111111111111111100 00111111211111111000
Q ss_pred ChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChHH
Q 003397 577 NLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPD------LVIFNSMLSICAKNSMYDR 650 (823)
Q Consensus 577 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 650 (823)
... ..+.....+... ..|+ ...|......+.+.++.++
T Consensus 625 ~~~--------------------------------~se~~Lp~s~~~----~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 625 KSA--------------------------------GSELKLPSSTVL----PGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhc--------------------------------ccccccCccccc----CCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 000 000000000000 0111 2245556666777788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHH
Q 003397 651 ANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD-LVSYNTVIKGFCRQGLMQEAMR--MLYE 727 (823)
Q Consensus 651 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~ 727 (823)
|...+.++..... -....|......+...|...+|.+.|...... .|+ +.+..++..++.+.|+-.-|.. ++..
T Consensus 669 a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 669 ARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 8777777665432 25566677777777888888888888877764 343 4567778888888887666655 8888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 728 MTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 728 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+.+.+ +-+...|..+...+.+.|+.+.|.+.|....+
T Consensus 746 alr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 746 ALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 88742 22467788888888888888888888888876
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=3e-10 Score=105.12 Aligned_cols=240 Identities=12% Similarity=0.044 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003397 492 RDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNC 571 (823)
Q Consensus 492 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 571 (823)
...-+.+..+|.+.|-+.+|.+.|+..++. .|-+.+|-.|-..|.+..++..|+.++.+-.+. .|-.+|+..
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~---- 294 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL---- 294 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----
Confidence 333467788888999999999988888775 456778888888899999999998888877664 344444322
Q ss_pred HHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 003397 572 YAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRA 651 (823)
Q Consensus 572 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 651 (823)
.+...+...++.++|
T Consensus 295 -----------------------------------------------------------------g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 295 -----------------------------------------------------------------GQARIHEAMEQQEDA 309 (478)
T ss_pred -----------------------------------------------------------------hhHHHHHHHHhHHHH
Confidence 111222233344445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003397 652 NEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
.++|+...+... .++....++...|.-.++.+.|+.+|+++++.|.. +...|+.+.-+|...+.+|-++.-|++....
T Consensus 310 ~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 310 LQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 555555444321 13344444444444455555555555555555433 4445555555555555555555555554442
Q ss_pred CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 732 GIRPC--IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 732 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
--.|+ ...|..|.......|++.-|.+.|+-.+..+.. +...++.|.-.-.+.|+.++|..+++.+....|.-.+
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 22222 234555555555555555555555555543322 3445555555555556666666666655555555433
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=3.2e-06 Score=88.58 Aligned_cols=238 Identities=15% Similarity=0.172 Sum_probs=132.7
Q ss_pred HHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003397 185 ILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWD 264 (823)
Q Consensus 185 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 264 (823)
.|...|+.+.|.+-...++ +..+|..|.+.|.+..+++-|.-.+..|...
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~a------------------------ 786 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA------------------------ 786 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhh------------------------
Confidence 4667899999988888876 4589999999999999999999999988752
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003397 265 RILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEME 344 (823)
Q Consensus 265 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 344 (823)
+-.+.+++..+.+- +...-.+++ ....|.+++|+.+|.+-+.. ..|=..|-..|.+++|.++-+.-.
T Consensus 787 RgaRAlR~a~q~~~--e~eakvAvL--AieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 787 RGARALRRAQQNGE--EDEAKVAVL--AIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred hhHHHHHHHHhCCc--chhhHHHHH--HHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc
Confidence 11122233333321 111111111 23557777777777765542 334445566677777777654332
Q ss_pred hCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHHHhcCCHHH
Q 003397 345 DNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKG-------------------LMPNAVTYTTLIDAYGRAGKVNK 405 (823)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------------~~p~~~~~~~li~~~~~~g~~~~ 405 (823)
+-. =..||......+-..++.+.|++.|++..... -.-|...|.-....+-..|++|.
T Consensus 854 RiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 854 RIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred cee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 211 12344445555555666766666665432110 00123333333444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 003397 406 ALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREM 483 (823)
Q Consensus 406 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 483 (823)
|+.+|..... |-.+++..|-.|+.++|-++-++-. |....-.+.+.|...|++.+|..+|.+.
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5555554432 3345555555566666555554422 3444445555566666666665555544
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=5.3e-09 Score=108.37 Aligned_cols=243 Identities=19% Similarity=0.290 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-C
Q 003397 493 DTFNTLISAYGRCGSGVDATKMFEDMMKT-----GF-TPCVT-TYNAFLNALARRGDWKAAESVILDMQNK-----GF-K 559 (823)
Q Consensus 493 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~ 559 (823)
.+...|...|...|+++.|..+++..++. |. .+.+. +.+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556777888888888888888776653 21 12222 2344667888899999999999988652 21 1
Q ss_pred C-CHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 003397 560 P-SETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLV-IFNS 637 (823)
Q Consensus 560 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 637 (823)
| -..++..|...|.+.|++++|....+. |.++++..... ..+.+. .++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~----------------------------Al~I~~~~~~~-~~~~v~~~l~~ 330 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCER----------------------------ALEIYEKLLGA-SHPEVAAQLSE 330 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHH----------------------------HHHHHHHhhcc-ChHHHHHHHHH
Confidence 1 223456666678888888777766443 34444442111 122222 4556
Q ss_pred HHHHHHccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCC--C-Chh
Q 003397 638 MLSICAKNSMYDRANEMLHLILES---GMQPN----LVTYNNLMDMYARAGKCWKAEEILKGILKS----GGT--P-DLV 703 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~ 703 (823)
++..|...+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.+++++++.. +.. . ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 677788888899988888766542 12222 246778888888888888888888877632 111 1 124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTN----RGI-RPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
.++.|...|.+.+++++|.++|.+... .|. .|+ ..+|..|+..|...|++++|+++.+.+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 566677777777777777777776543 121 122 3456777777777777777777777665
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=3.8e-09 Score=98.03 Aligned_cols=228 Identities=13% Similarity=0.022 Sum_probs=144.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHc
Q 003397 216 SILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTC-STVISACGR 294 (823)
Q Consensus 216 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~ 294 (823)
-+..+|.+.|.+.+|.+.|+.-.+. .|.+.||..|-..|.+... -..|+.++.+-.+. .|-.+|| .-+.+.+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQ-P~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQ-PERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhcc-HHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 4556666666666666666665553 4566666666666666655 36666666665543 2333333 334455666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003397 295 EGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAAL 374 (823)
Q Consensus 295 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 374 (823)
.++.++|.+++....+.. ..++.....+...|.-.++.+-|+..|+++.+.|+. +...|+.+.-+|.-.++++-++--
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 677777777777766652 334555555666667777777777777777777754 556666666666677777777777
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 003397 375 IDTMSSKGLMPN--AVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSS 451 (823)
Q Consensus 375 ~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 451 (823)
|++....--.|+ ...|-.+.......||+..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 776665433332 234555666666677777777777777665432 5567777777777777777777777776654
No 77
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.25 E-value=1e-06 Score=90.86 Aligned_cols=254 Identities=17% Similarity=0.225 Sum_probs=128.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHH-HHHH
Q 003397 140 LVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAY-TSIL 218 (823)
Q Consensus 140 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li 218 (823)
+..+..+|.+...+++|-.+|+.+.. +..-+..+.+..-+..|.++-+..-.. .++.. ..-.
T Consensus 651 l~~ia~alik~elydkagdlfeki~d-------------~dkale~fkkgdaf~kaielarfafp~----evv~lee~wg 713 (1636)
T KOG3616|consen 651 LEHIAAALIKGELYDKAGDLFEKIHD-------------FDKALECFKKGDAFGKAIELARFAFPE----EVVKLEEAWG 713 (1636)
T ss_pred HHHHHHHHHhhHHHHhhhhHHHHhhC-------------HHHHHHHHHcccHHHHHHHHHHhhCcH----HHhhHHHHHh
Confidence 34455566666666666666666532 112233444444455555544432111 11111 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 003397 219 HAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLL 298 (823)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 298 (823)
.-+...|+++.|+..|-+... ...-+.+...... |.+|+.+++.+...+. ....|..+...|...|++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~ake-w~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKE-WKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhh-hhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 223344556666555543321 1111222222223 7778877777766532 233566677778888888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003397 299 NEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTM 378 (823)
Q Consensus 299 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (823)
+.|+++|.+.- .++-.|.+|.+.|++++|.++-++... .......|-.-..-+-+.|++.+|.++|-.+
T Consensus 782 e~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 782 EIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 88887776432 245567778888888888777665543 2233444555555566677777777666433
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003397 379 SSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKIL 445 (823)
Q Consensus 379 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 445 (823)
.. |+. .|.+|-+.|..+..+++.++-.... -..|...+..-|-..|++..|..-|
T Consensus 851 ~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 851 GE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred cC----chH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHH
Confidence 21 222 3455556666555555554432110 1122333344444455555554444
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=8.9e-09 Score=106.73 Aligned_cols=240 Identities=17% Similarity=0.191 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHH
Q 003397 526 CVTTYNAFLNALARRGDWKAAESVILDMQNK-----GF-KPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWML 599 (823)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 599 (823)
-..+...+...|...|+++.|..+++...+. |. .+...+ .
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~----------------------------------~ 243 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS----------------------------------M 243 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH----------------------------------H
Confidence 3455666888999999999999999887653 10 111111 1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCC-CC
Q 003397 600 LRTLILVNFKCRALQGMERAFQELQK-------HGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILES-----GMQ-PN 666 (823)
Q Consensus 600 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~ 666 (823)
...+...|...+++.+|..+|+++.. ....--..+++.|..+|.+.|++++|...++.+.+- +.. +.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 12334444555555555555554432 211112347788888999999999999988877642 211 22
Q ss_pred H-HHHHHHHHHHHHcCCHhHHHHHHHHHHHc---CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 003397 667 L-VTYNNLMDMYARAGKCWKAEEILKGILKS---GGTPD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GI- 733 (823)
Q Consensus 667 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~- 733 (823)
+ ..++.+...|...+++++|..++++..+. -+.++ ..+++.|...|.+.|++++|.+++++++.. +.
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 2 23566777888999999999999877642 11122 367899999999999999999999998863 11
Q ss_pred -CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 734 -RPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ----HNCK-PN-ELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 734 -~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
.+. ...++.|...|.+.+.+++|.++|.+... .|.. |+ ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 44578899999999999999999888753 3332 23 5679999999999999999999988776
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.23 E-value=9.3e-07 Score=93.26 Aligned_cols=265 Identities=16% Similarity=0.132 Sum_probs=161.2
Q ss_pred HHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Q 003397 179 IQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYG- 257 (823)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~- 257 (823)
.--...++...|+++.|...+...... +.............|.+.|+.++|..+|..+.++ .|+...|...+..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHh
Confidence 334456778899999999998775443 2223456667778888999999999999999887 566666655555444
Q ss_pred hc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 003397 258 KM----GRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLN-EAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGV 332 (823)
Q Consensus 258 ~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~ 332 (823)
.. ....+...++|+++...- |.......+.-.+.....+. .+..++..+...|++ .+|+.|-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 11 123467777888877664 33333333332233322332 344555666666642 245555555654445
Q ss_pred HHHHHHHHHHHHhC----C----------CCCCh--hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003397 333 YSEALSILKEMEDN----N----------CPPDS--VTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDA 396 (823)
Q Consensus 333 ~~~A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 396 (823)
.+-..+++...... + -+|.. .++..+...|...|++++|++.+++.++.... .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 55555555554322 1 12222 23344556666777777777777777766322 35566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 003397 397 YGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGC 453 (823)
Q Consensus 397 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 453 (823)
+-..|++.+|.+.++........ |...-+..+..+.+.|++++|.+++......+.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 77777777777777777665433 555555566667777777777777777665543
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=4e-11 Score=82.58 Aligned_cols=50 Identities=38% Similarity=0.754 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003397 209 LDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGK 258 (823)
Q Consensus 209 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 258 (823)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57888888888888888888888888888888888888888888888864
No 81
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.19 E-value=2.9e-06 Score=87.72 Aligned_cols=386 Identities=15% Similarity=0.179 Sum_probs=218.6
Q ss_pred CChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 003397 190 SRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGL 269 (823)
Q Consensus 190 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 269 (823)
+++.+|+.+|-.-. .-..-|..|....++++|+.+-+.. |.+.-...-.+.+..+...|++ ++|-++
T Consensus 545 kkfk~ae~ifleqn---------~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd-~ka~el 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN---------ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQD-EKAAEL 611 (1636)
T ss_pred hhhhHHHHHHHhcc---------cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCch-hhhhhh
Confidence 34677777665321 1123566677777888887765432 2221122233445555555553 443322
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 003397 270 LDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCP 349 (823)
Q Consensus 270 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 349 (823)
+.. +..+ .+.|..|.+.|..-.|......-... ..|......+..++.+..-+++|-++|+++.+.
T Consensus 612 ----k~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~elydkagdlfeki~d~--- 677 (1636)
T KOG3616|consen 612 ----KES----DGDG-LAAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGELYDKAGDLFEKIHDF--- 677 (1636)
T ss_pred ----ccc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---
Confidence 111 1222 23456777888777766544322111 234445555666677777777777777776531
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 350 PDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVT-YTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAV 428 (823)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 428 (823)
...+..|-+..-+.+|+++-+...-. .+++ -......+...|+++.|..-|-+... .-..
T Consensus 678 ------dkale~fkkgdaf~kaielarfafp~----evv~lee~wg~hl~~~~q~daainhfiea~~---------~~ka 738 (1636)
T KOG3616|consen 678 ------DKALECFKKGDAFGKAIELARFAFPE----EVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKA 738 (1636)
T ss_pred ------HHHHHHHHcccHHHHHHHHHHhhCcH----HHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHH
Confidence 22334444444455555554432111 1111 11223344556677777666644321 1223
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003397 429 LGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSG 508 (823)
Q Consensus 429 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 508 (823)
+.+......+.+|+.+++.+.+... -..-|..+.+.|...|+++.|.++|.+.- .++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4555667788888888887776522 23446666778888888888888876532 345567788888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 003397 509 VDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEI 588 (823)
Q Consensus 509 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 588 (823)
++|.++-++... .......|-+-..-+-++|++.+|.+++-.+.. |+ ..+..|.+.|..++..++...-
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 888888766653 233455666666667778888888877754432 22 2456777777777766665543
Q ss_pred HhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003397 589 YAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEML 655 (823)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 655 (823)
.... -......+..-+-..|++..|+.-|-+.. -|.+.+++|...+.+++|.++-
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 1111 11233445556666777777776655433 2455666777777777766553
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.19 E-value=8.7e-09 Score=91.43 Aligned_cols=204 Identities=10% Similarity=-0.019 Sum_probs=167.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
...-.+...|...|+...|..-+++.++.++. +..+|..+...|.+.|..+.|.+.|+.+++.... +..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 35556778899999999999999998887533 5568888888999999999999999999887644 778888888889
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhH
Q 003397 678 ARAGKCWKAEEILKGILKSGGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTE 755 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 755 (823)
|..|++++|...|++......-+ -..+|..++-+..+.|+.+.|.+.|++.++. .|+ ..+...+.....+.|++-.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988653222 2367888888888999999999999998884 344 5677788888889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 756 IDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 756 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
|..+++.....+. ++.......|+.-.+.|+-+.|.++=..+....|.-.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9999988887655 6888888888888889999999998888888888743
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.19 E-value=3.8e-06 Score=90.23 Aligned_cols=566 Identities=12% Similarity=0.022 Sum_probs=296.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 003397 212 RAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGL-EFDEFTCSTVIS 290 (823)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~ 290 (823)
.+|..|..-|+...+...|.+.|++..+.. ..+...+......|++... |+.|..+.-..-+... ..-...|..+.-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~-we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEEST-WEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcccc-HHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 567777777777777778888888776652 3455567777777777665 6777766322222110 001112222333
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHH--HHHHHHHcCCH
Q 003397 291 ACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNE--VVGAYVRAGFY 368 (823)
Q Consensus 291 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~ 368 (823)
.|.+.++...|..-|+...+.. +.|...|..++.+|...|++..|.++|.+..... |+ .+|.. .....+..|++
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~-s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL-SKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH-hHHHHHHHHHHHHHhhhH
Confidence 4567777777777777766653 3356677778888888888888888887776542 32 22222 22334567788
Q ss_pred HHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHcC
Q 003397 369 EEGAALIDTMSSKG------LMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKES-------GCAPNVCTYNAVLGMLGKK 435 (823)
Q Consensus 369 ~~a~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~ 435 (823)
.+|...+..+.... ..--..++-.+...+...|-..+|..++++-++. ....+...|-.+
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a------- 719 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH-------
Confidence 88877777665431 0101222333333333334344444444433221 111111222111
Q ss_pred CCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 003397 436 GRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLD---K---YVNQVFREMKSCGFEPDRDTFNTLISAYGR----C 505 (823)
Q Consensus 436 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 505 (823)
..|..+|-...- . .|+......+..-..+.+.. + .+.+.+-.-.+ +..+..+|..|+..|.+ .
T Consensus 720 ---sdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 720 ---SDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred ---hHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHc
Confidence 122223322220 0 12222222222212222211 1 11111111111 11223444444444433 1
Q ss_pred C----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 003397 506 G----SGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGI 581 (823)
Q Consensus 506 ~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 581 (823)
+ +...|...+...++..- .+...|+.|... ...|++.-+...|-+-.... +....+|..+...+.+..+++.+
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 1 22356666666665432 266677776554 55677877777776655442 33566777777788888888888
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHH--H--HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003397 582 RKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQE--L--QKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHL 657 (823)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 657 (823)
...+.....-.+.. ....-.....-...|+.-++..+|.. . ...|--++...|-........+|+.++-+...+.
T Consensus 870 ~~af~~~qSLdP~n-l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLN-LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhcCchh-hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 88887764433322 12222333334455666666666654 1 1223334444444444444566666654444333
Q ss_pred HHH---------cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCCChhHHHH----HHHHHHhcCCHHHHHH
Q 003397 658 ILE---------SGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKS-GGTPDLVSYNT----VIKGFCRQGLMQEAMR 723 (823)
Q Consensus 658 ~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~~~~~g~~~~A~~ 723 (823)
+-. .+.+.+...|...+...-+.+.+..|.....+.... ..+-+...|+. +.+.++..|.++.|..
T Consensus 949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 211 133346677777777777778888877777765411 01234444553 3445566677776655
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 003397 724 MLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN-CKPN-ELTYKIVVDGYCKARKYKEAMDFLSKIKER 801 (823)
Q Consensus 724 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 801 (823)
-+...-. ..+..+-..-+ +....|+++++.+.|++++..- -+-+ +.....++.+...+|..+.|+..+-+....
T Consensus 1029 a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1029 ASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred hhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 4332211 11222221112 1245688999999999997521 1112 344567777778888888899888877776
Q ss_pred CCCC
Q 003397 802 DDSF 805 (823)
Q Consensus 802 ~~~~ 805 (823)
.+..
T Consensus 1105 s~~~ 1108 (1238)
T KOG1127|consen 1105 SKVQ 1108 (1238)
T ss_pred Cccc
Confidence 6554
No 84
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=2.5e-08 Score=109.25 Aligned_cols=148 Identities=16% Similarity=0.029 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003397 298 LNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDT 377 (823)
Q Consensus 298 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 377 (823)
+++|...+++..+.. +.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555444432 1123344444444444555555555555544432 22233444444444455555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 003397 378 MSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDM 448 (823)
Q Consensus 378 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 448 (823)
..+.... +...+..++..+...|++++|+..++++.....+-+...+..+..++...|+.++|...++++
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4444222 111112222223334445555555444443321112223334444444445555555544444
No 85
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=1.5e-08 Score=98.80 Aligned_cols=199 Identities=13% Similarity=0.057 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 003397 282 EFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGA 361 (823)
Q Consensus 282 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 361 (823)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4556666777777888888888887776652 2235566667777777778888877777776653 2344566666777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003397 362 YVRAGFYEEGAALIDTMSSKGL-MPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEE 440 (823)
Q Consensus 362 ~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 440 (823)
+...|++++|.+.+++..+... ......+..+...+...|++++|...+++...... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777765421 11334455566666777777777777777665432 234556666666677777777
Q ss_pred HHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003397 441 MMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMK 484 (823)
Q Consensus 441 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 484 (823)
|...+++..+. ...+...+..+...+...|+.+.|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777666554 22234444455555556666666666555543
No 86
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=7.7e-11 Score=81.13 Aligned_cols=48 Identities=38% Similarity=0.720 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003397 351 DSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYG 398 (823)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 398 (823)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 344444444444444444444444444444444444444444444443
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=2.8e-08 Score=88.32 Aligned_cols=184 Identities=17% Similarity=0.101 Sum_probs=150.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003397 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFC 713 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 713 (823)
+...+.-.|...|++..|..-++++++..+. +..+|..+...|.+.|+.+.|.+.|++.++.. +.+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4455677899999999999999999997644 77889999999999999999999999999863 335678899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003397 714 RQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
.+|++++|...|++..+.-.-+ -..+|..+..+..+.|+.+.|.+++++.++.... .......+.+...+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 9999999999999999853222 2568999999999999999999999999985433 4667888999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 003397 793 DFLSKIKERDDSFNDESVKRLTFRVREILE 822 (823)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 822 (823)
-+++......+-..+.. .|..+|.+.+|
T Consensus 194 ~~~~~~~~~~~~~A~sL--~L~iriak~~g 221 (250)
T COG3063 194 LYLERYQQRGGAQAESL--LLGIRIAKRLG 221 (250)
T ss_pred HHHHHHHhcccccHHHH--HHHHHHHHHhc
Confidence 99999998887433322 34555666554
No 88
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=2e-08 Score=109.95 Aligned_cols=249 Identities=12% Similarity=0.064 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 003397 297 LLNEAKEFFAGLKLEGYVPG-TVTYNSLLQVFG---------KAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAG 366 (823)
Q Consensus 297 ~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (823)
++++|.+.|++..+. .|+ ...|..+..++. ..+++++|...+++..+.+ +.+..++..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456777777777765 343 334444444333 2244788888888888765 346677777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003397 367 FYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILC 446 (823)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 446 (823)
++++|...|++..+.+.. +...+..+...+...|++++|+..+++..+.+.. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 888888888888876533 5666777778888888888888888888776432 22233334445666788888888888
Q ss_pred HhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC
Q 003397 447 DMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGF-TP 525 (823)
Q Consensus 447 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~ 525 (823)
++.+....-+...+..+..++...|+.++|...+..+.... ..+....+.+...|+..| +.|...++.+.+..- .+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 87654212133445556666777888888888887765441 222333444555556655 366666666554211 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003397 526 CVTTYNAFLNALARRGDWKAAESVILDMQNK 556 (823)
Q Consensus 526 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 556 (823)
....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11111 33344455666666555 666554
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.15 E-value=2.3e-05 Score=84.44 Aligned_cols=637 Identities=10% Similarity=-0.022 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003397 153 RERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAIS 232 (823)
Q Consensus 153 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 232 (823)
...|+..|-.+.+... .-..+|..|..+|...-+...|...|+..-+.+- -+...+......|++...++.|..
T Consensus 474 ~~~al~ali~alrld~-----~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-----SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHhccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHH
Confidence 4555655555555322 1234566666666665566666666665554432 245556666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003397 233 LFEKVKEMGLSPTLVTYNVMLDVY--GKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKL 310 (823)
Q Consensus 233 ~~~~m~~~g~~~~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 310 (823)
+.-..-+.. .--...+|.+-.+. ...++ ...++.-|+...... +-|...|..+..+|.+.|++..|.++|.+...
T Consensus 548 I~l~~~qka-~a~~~k~nW~~rG~yyLea~n-~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 548 ICLRAAQKA-PAFACKENWVQRGPYYLEAHN-LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHhhhc-hHHHHHhhhhhccccccCccc-hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 633222211 11111122222221 22222 345555555544433 22444566666666666666666666665554
Q ss_pred CCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCChhHHHHHHHHHHHcCCHHHHHHHHHH------
Q 003397 311 EGYVPG-TVTYNSLLQVFGKAGVYSEALSILKEMEDN------NCPPDSVTYNEVVGAYVRAGFYEEGAALIDT------ 377 (823)
Q Consensus 311 ~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------ 377 (823)
. .|+ ...-.-.....+-.|.+.+|++.+...... +..--..++-.+...+.-.|-...+...+++
T Consensus 625 L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 625 L--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred c--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3 222 112222233344556666666665554321 0000112222222222222222222222221
Q ss_pred -HHhCCC-----------------------CCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCCHHHHHH
Q 003397 378 -MSSKGL-----------------------MPNAVTYTTLIDAYGRAGKV---N---KALRLLNKMKESGCAPNVCTYNA 427 (823)
Q Consensus 378 -~~~~~~-----------------------~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~ 427 (823)
...... .|+......+..-.-..+.. | -+.+.+-.-.+ ...+..+|..
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyN 780 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYN 780 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHH
Confidence 111111 11221111111111112211 1 01111111111 1123344444
Q ss_pred HHHHHHc--------CCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003397 428 VLGMLGK--------KGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLI 499 (823)
Q Consensus 428 li~~~~~--------~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 499 (823)
++..|.+ ..+...|+..++..++.. .-+..+|+.|--. ...|++.-+...|-.-.... +....+|..+.
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~Nlg 857 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLG 857 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccc
Confidence 4443332 122346788888776642 2256677766544 66677777777776655442 45567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHcc
Q 003397 500 SAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQN----KGFKPSETSFSLMLNCYAKG 575 (823)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~~~~~~ 575 (823)
..+.+..+++.|...|........ .+...|-.........|+.-++..+|..--. .|--++..-|..........
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~N 936 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQN 936 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhc
Confidence 888899999999999988876532 3566666666666677888888888876221 23334444455555555566
Q ss_pred CChhHHHHHHHHH---------HhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HCCCCCCHHHHHH----HH
Q 003397 576 GNLKGIRKIEKEI---------YAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQ---KHGYKPDLVIFNS----ML 639 (823)
Q Consensus 576 ~~~~~a~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~----l~ 639 (823)
|+.+.-....+.+ .-.+.......+.......-..+....|.....++. +. .-+...|+. ..
T Consensus 937 g~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~--k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 937 GNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLEL--KLDESQYNVAKPDAG 1014 (1238)
T ss_pred cchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhh
Confidence 6655433332222 112222333344444444444555555554444332 11 113333443 23
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCC-hhHHHHHHHHHHhcCC
Q 003397 640 SICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSG-GTPD-LVSYNTVIKGFCRQGL 717 (823)
Q Consensus 640 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~ 717 (823)
..++..|.++.|..-+...-. ..+..+-..-+.. .-.|+++++.+.|+++...- -..+ ++....++.+....+.
T Consensus 1015 RL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 344455666655443322111 0111111111111 23578899999999887431 1122 2344555666677777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHH
Q 003397 718 MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTY---KIVVDGYCKARKYKEAMDF 794 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~ 794 (823)
-+.|...+-+.... -+++......|...+.-..+-+....+.+++.+. ++.....| ...-..|.+.|+-....+.
T Consensus 1091 k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~ 1168 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQ 1168 (1238)
T ss_pred chHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHH
Confidence 88888887777663 2345555444444333333323333333333321 11111111 1223357788888888999
Q ss_pred HHHHhhcCCCCCHHHHHHHHH
Q 003397 795 LSKIKERDDSFNDESVKRLTF 815 (823)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~l~~ 815 (823)
+++..-..|.+ ...|..|.-
T Consensus 1169 ~qr~~h~~P~~-~~~WslL~v 1188 (1238)
T KOG1127|consen 1169 IQRAVHSNPGD-PALWSLLSV 1188 (1238)
T ss_pred HHHHHhcCCCC-hHHHHHHHH
Confidence 99999888876 566777653
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=3.9e-08 Score=98.20 Aligned_cols=202 Identities=12% Similarity=-0.011 Sum_probs=143.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003397 600 LRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR 679 (823)
Q Consensus 600 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 679 (823)
+......|...|+.++|...|++..+..+. +...|+.+...|...|++++|.+.|+.+++.... +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444555667777888888888888877543 6789999999999999999999999999986543 56788888999999
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 003397 680 AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEV 759 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 759 (823)
.|++++|.+.|++..+. .|+..........+...++.++|+..|++.... ..++...+ . ......|+++++ +.
T Consensus 145 ~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-HH
Confidence 99999999999999875 344322222223344567899999999876643 23332222 2 233345666554 34
Q ss_pred HHHHHh---CCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCHHHH
Q 003397 760 IKHMFQ---HNC--KP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDD-SFNDESV 810 (823)
Q Consensus 760 ~~~~~~---~~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 810 (823)
++.+.+ ..+ .| ....|..++..|.+.|++++|..+++++.+.+| ++.+-.+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 444442 111 11 245789999999999999999999999999986 5444333
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.7e-07 Score=90.80 Aligned_cols=103 Identities=23% Similarity=0.232 Sum_probs=69.3
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHH
Q 003397 291 ACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPD-SVTYNEVVGAYVRAGFYE 369 (823)
Q Consensus 291 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 369 (823)
+.+..|+++.|...|.+.+... ++|-+.|..-..+|.+.|+|++|++=-.+-.+. .|+ ...|.-...++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4556777888887777776654 336667777777777777777777665555543 343 356677777777777888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003397 370 EGAALIDTMSSKGLMPNAVTYTTLIDAY 397 (823)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~li~~~ 397 (823)
+|+.-|.+-++.... |...++.+.+++
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 888877777766433 566666666665
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-05 Score=78.18 Aligned_cols=271 Identities=11% Similarity=0.032 Sum_probs=150.2
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 349 PPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAV 428 (823)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 428 (823)
+-|+.....+.+.+...|+.++|+..|++....+.. +......-.-.+.+.|+++....+...+.... .-+...|-.-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 445556666666666777777777777666554211 11111111222345566666665555554321 1133344444
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003397 429 LGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSG 508 (823)
Q Consensus 429 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 508 (823)
.......++++.|+.+-++.++.... +...+..-...+...++.++|.-.|+..+... +-+..+|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 45555566677777776666654211 33333333345666777777777777665542 24556777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHH
Q 003397 509 VDATKMFEDMMKTGFTPCVTTYNAFL-NAL-ARRGDWKAAESVILDMQNKGFKPS-ETSFSLMLNCYAKGGNLKGIRKIE 585 (823)
Q Consensus 509 ~~a~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 585 (823)
.+|...-++..+. +..+..+...+. ..+ ....--++|.+++++-... .|+ ......+...+...|..+++..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7776665555442 222344443331 112 2223346666666665543 333 233445555666677777777776
Q ss_pred HHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCC
Q 003397 586 KEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGY 628 (823)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 628 (823)
+.... ..++..+.+.+...+...+.+.+|...|......++
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 66543 244566667777777777777888777777776643
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.03 E-value=3e-05 Score=77.97 Aligned_cols=428 Identities=9% Similarity=0.084 Sum_probs=235.0
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 349 PPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAV 428 (823)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 428 (823)
+-|..+|..||+-+... .++++.+.++++...-. -....|..-|..-.+.++++..+++|.+.+..-+ +...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 56888999988876655 88999999999887632 2566788888888889999999999998877633 45556655
Q ss_pred HHHHHc-CCCHH----HHHHHHHHhhh-CCCCC-ChhHHHHHHHH---------HHccCCHHHHHHHHHHHHHCCCCCCH
Q 003397 429 LGMLGK-KGRSE----EMMKILCDMKS-SGCSP-NRITWNTMLTM---------CGNKGLDKYVNQVFREMKSCGFEPDR 492 (823)
Q Consensus 429 i~~~~~-~g~~~----~a~~~~~~~~~-~~~~p-~~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~ 492 (823)
+..-.+ .|+.. ...+.|+-... .|..+ +...|+..+.. +....+.+...++|+++....+
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm---- 168 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM---- 168 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc----
Confidence 543332 22222 22233333332 34332 22334444432 2223344555555555554322
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHH-------
Q 003397 493 DTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQN--KGFKPSET------- 563 (823)
Q Consensus 493 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~------- 563 (823)
+++++-++-|..... ..|..+-..++ --+...+..|.++++++.. .|..-+..
T Consensus 169 -------------~nlEkLW~DY~~fE~---~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T 230 (656)
T KOG1914|consen 169 -------------HNLEKLWKDYEAFEQ---EINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT 230 (656)
T ss_pred -------------ccHHHHHHHHHHHHH---HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence 122222222222211 01111111111 1123334455555555432 12211111
Q ss_pred --------HHHHHHHHHHccCChh--H-------HHHHHHHH-HhCCCCChHHH-----HHHHHHHhhhhhh-------H
Q 003397 564 --------SFSLMLNCYAKGGNLK--G-------IRKIEKEI-YAGRIFPSWML-----LRTLILVNFKCRA-------L 613 (823)
Q Consensus 564 --------~~~~ll~~~~~~~~~~--~-------a~~~~~~~-~~~~~~~~~~~-----~~~l~~~~~~~~~-------~ 613 (823)
.|..+|.-- +...+. + ..-++++. .--...|+... +......+...|+ -
T Consensus 231 ~~e~~qv~~W~n~I~wE-ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 231 KDEIQQVELWKNWIKWE-KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred hHHHHHHHHHHHHHHHH-hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 122222111 111100 0 00011111 00111111110 0111122233333 3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 003397 614 QGMERAFQELQKHGYKPDLVIFNSMLSICA---KNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEIL 690 (823)
Q Consensus 614 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 690 (823)
+++..+++.....-..-+..+|..+.+-=. .....+...+++++....-..--..+|..+++.-.+..-++.|+.+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555443322223333333332111 11124555666666665322222356778888888888899999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 003397 691 KGILKSGGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK 769 (823)
Q Consensus 691 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 769 (823)
.++.+.+..+ ++.++++++.-|| .++.+-|.++|+--+.+ +.-+.......++-+.+.|+-..|..+|++.+..++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999877666 6778888888766 67889999999976663 2223444466777888889989999999999987666
Q ss_pred CC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 770 PN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 770 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
++ ..+|..+++-=..-|+++.+.++-++.....|..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 65 5789999999999999999999999888777643
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.4e-06 Score=78.77 Aligned_cols=350 Identities=15% Similarity=0.090 Sum_probs=198.8
Q ss_pred HHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 003397 179 IQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVM-LDVYG 257 (823)
Q Consensus 179 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l~~~~ 257 (823)
+...+..+.+..++..|++++....+... .+......|..+|....++..|-..|+++... .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 34445555677788888888877665532 25666777778888888888888888888764 4555555432 33444
Q ss_pred hcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 003397 258 KMGRSWDRILGLLDEMRSRGLEFDEFTCSTVI--SACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSE 335 (823)
Q Consensus 258 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~ 335 (823)
+.+. +.+|+++...|... ++...-..-+ ......+++-.+..+.++....| +..+.+.......+.|+++.
T Consensus 90 ~A~i-~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACI-YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred Hhcc-cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5555 57777777766642 1111111111 12335677777777777665432 44555555666667788888
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHH
Q 003397 336 ALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTY----TTLIDAYGRAGKVNKALRLLN 411 (823)
Q Consensus 336 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~ 411 (823)
|.+-|+...+.+---....||..+. ..+.|+++.|++...+++++|++-....- +-.+++ +.+..-..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHHH
Confidence 8888877766543334566765443 34567788888888887777754222100 000110 00000011111
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 003397 412 KMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSS-GCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEP 490 (823)
Q Consensus 412 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 490 (823)
.. -+..+|.-...+.+.|+++.|.+-+.+|.-+ .-..|++|...+.-.-. .+++....+-+..+...+ +-
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CC
Confidence 10 1223455555677889999999999888644 23457777766543322 233444444455555554 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 003397 491 DRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFT-PCVTTYNAFLNALA-RRGDWKAAESVILDM 553 (823)
Q Consensus 491 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~-~~g~~~~a~~~~~~m 553 (823)
...||..++-.||+..-++.|.+++.+-....+. .+...|+ |++++. -.-..+++.+-+..+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 4578888888999988888888887654322111 1223333 333333 234556655554444
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.2e-06 Score=80.60 Aligned_cols=424 Identities=13% Similarity=0.078 Sum_probs=195.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 003397 355 YNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNA-VLGMLG 433 (823)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 433 (823)
++..+..+++..++++|++++..-.++..+ +....+.|..+|....++..|-..++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 333444444445555555555444443221 3334444444555555555555555554432 222222221 223344
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHH--HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003397 434 KKGRSEEMMKILCDMKSSGCSPNRITWNTMLTM--CGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDA 511 (823)
Q Consensus 434 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 511 (823)
+.+.+..|+++...|.+. ++...-..-+.+ ....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 455555555555555432 111111111111 223445555555555443222 333334444445567777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHccCChhHHHHHHHH
Q 003397 512 TKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETS----FSLMLNCYAKGGNLKGIRKIEKE 587 (823)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~ 587 (823)
.+-|+...+-+---....|+..+ +..+.|+++.|+++..++.+.|++.-+.. ..-.+.+ ...|+. ..+...
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~S 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQS 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHHH
Confidence 77777766543222445555444 34566777777777777776665321110 0000000 000000 000000
Q ss_pred HHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003397 588 IYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH-GYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPN 666 (823)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 666 (823)
. -...++.-...+.+.++.+.|.+.+..|..+ ....|+++...+.-.- ..+++-+..+-+.-++..++ -.
T Consensus 239 a-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 239 A-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred H-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 0 0112333445566777788887777766432 1234666655443221 23444444444444555444 25
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003397 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGG-TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
..||..++-.||+..-++-|-.++-+-..... -.+...|+.|=......-..++|.+-++.+...-.. .......-+.
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQ 388 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQ 388 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 67888888888888888888777754322111 123334443322223344566666655554431000 0000000011
Q ss_pred HHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 746 GYAGQGM---FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 746 ~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
--....+ +.+|++-+++.++. =.....+-.+.|.+..++..+.+.++.-.+...+++
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 1111111 11222233333321 112233455677888888888888888877766543
No 96
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=7.2e-05 Score=75.38 Aligned_cols=176 Identities=11% Similarity=0.038 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHH
Q 003397 613 LQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQP-NLVTYNNLMDMYARAGKCWKAEEILK 691 (823)
Q Consensus 613 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 691 (823)
.+.....++++...-..--..+|...++.-.+..-+..|..+|.++.+.+..+ ++.++++++..|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455556655543222223467777887778888999999999999877666 7788888888776 678899999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--
Q 003397 692 GILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC--IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN-- 767 (823)
Q Consensus 692 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 767 (823)
--++. ..-+..--...++-+...++-..|..+|++.+..++.++ ..+|..++.--+.-|++..++++-+++...=
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 77664 233445556677888889999999999999999877776 4679999988889999999999888776421
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHH
Q 003397 768 -CKPNELTYKIVVDGYCKARKYKE 790 (823)
Q Consensus 768 -~~p~~~~~~~l~~~~~~~g~~~~ 790 (823)
..+....-..+++.|.-.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 22222333455666655555443
No 97
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.96 E-value=0.00013 Score=78.24 Aligned_cols=224 Identities=17% Similarity=0.132 Sum_probs=150.1
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHH--HHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCC
Q 003397 149 VSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVR--ILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGK 226 (823)
Q Consensus 149 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 226 (823)
..+++..|+.......++++. . .|..++. .+.+.|+.++|..+++.....+.. |..+...+-.+|.+.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn-----~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN-----A--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC-----c--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 346788999999999887553 2 2333333 456899999999999887766544 88999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------
Q 003397 227 YEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGL--------- 297 (823)
Q Consensus 227 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--------- 297 (823)
.++|..+|++..+. .|+......+..+|.+.+. +.+..+.--+|-+ .++-+.+.+-++++.+...-.
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~-yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKS-YKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccch
Confidence 99999999999875 6776667777778877665 4443333333333 334466666666666543211
Q ss_pred -HHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 003397 298 -LNEAKEFFAGLKLEG-YVPGTVTYNSLLQVFGKAGVYSEALSIL-KEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAAL 374 (823)
Q Consensus 298 -~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 374 (823)
..-|.+.++.+.+.+ ..-+..-...-...+-..|.+++|.+++ ....+.-..-+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 234666777766653 1111111222234455678899999988 4444443344445555667788888999999999
Q ss_pred HHHHHhCCCC
Q 003397 375 IDTMSSKGLM 384 (823)
Q Consensus 375 ~~~~~~~~~~ 384 (823)
-.++..+|..
T Consensus 249 ~~~Ll~k~~D 258 (932)
T KOG2053|consen 249 SSRLLEKGND 258 (932)
T ss_pred HHHHHHhCCc
Confidence 8888888644
No 98
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=3.1e-06 Score=87.89 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=8.6
Q ss_pred CcccHHHHHHHHHhcCC
Q 003397 316 GTVTYNSLLQVFGKAGV 332 (823)
Q Consensus 316 ~~~~~~~li~~~~~~~~ 332 (823)
|..+|.-=|+.+|+..+
T Consensus 837 Na~afgF~is~L~kL~d 853 (1102)
T KOG1924|consen 837 NAQAFGFNISFLCKLRD 853 (1102)
T ss_pred cchhhccchHHHHhhcc
Confidence 44455545555555444
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=5.8e-06 Score=83.19 Aligned_cols=405 Identities=17% Similarity=0.148 Sum_probs=226.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCH
Q 003397 360 GAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPN-VCTYNAVLGMLGKKGRS 438 (823)
Q Consensus 360 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 438 (823)
++.+..|+++.|+.+|-+.+..... |.+.|..-..+|.+.|++++|++=-.+..+. .|+ ..-|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4556778888888888887776544 7778888888888888888887766655553 344 34677777777778888
Q ss_pred HHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHH-HHHHH
Q 003397 439 EEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSG-VDA-TKMFE 516 (823)
Q Consensus 439 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a-~~~~~ 516 (823)
++|+.-|.+-++.. ..|...++-+..++ ..+.+. +.. .-+...|..+..--....-. +.+ ..+++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 88888888776652 22445555555554 111111 111 11222222222111100000 111 11122
Q ss_pred HHHhCCCCCC-HHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHccCChhHHHHHH
Q 003397 517 DMMKTGFTPC-VTT---YNAFLNALARRGDWKAAESVILDMQNKG-------FKPSETSFSLMLNCYAKGGNLKGIRKIE 585 (823)
Q Consensus 517 ~~~~~~~~~~-~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 585 (823)
.+... |+ ... ...++.+.......+.- .+...+ ..|. .......-..++..+-.+
T Consensus 154 ~~~~~---p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 154 IIQKN---PTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPC----KQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred HhhcC---cHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcc----cccCCCCCccchhHHHHH--
Confidence 22111 11 000 01111111111100000 000011 1111 000000000000000000
Q ss_pred HHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 003397 586 KEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQP 665 (823)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 665 (823)
...-..-...+.....+..+++.+.+-+....+.. -+..-++....+|...|.+.+.+..-...++.|-+
T Consensus 220 -------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre- 289 (539)
T KOG0548|consen 220 -------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE- 289 (539)
T ss_pred -------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-
Confidence 00001122345556666777777888777777654 35555666667788888887777777766665532
Q ss_pred CHHHHH-------HHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhH-------------------------HHHHHHHHH
Q 003397 666 NLVTYN-------NLMDMYARAGKCWKAEEILKGILKSGGTPDLVS-------------------------YNTVIKGFC 713 (823)
Q Consensus 666 ~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~ 713 (823)
...-|+ .+..+|.+.++++.|+..|++.+.....|+... ...-...+-
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAF 369 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 222222 233456666778888888887665433333221 111244566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003397 714 RQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
+.|++..|++.|.+++... +-|...|....-+|.+.|.+.+|++-.+..++. .| ....|..-+.++....++++|.
T Consensus 370 k~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred hccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999864 345777888999999999999999999998885 44 4566766677777788999999
Q ss_pred HHHHHHhhcCCCCCH
Q 003397 793 DFLSKIKERDDSFND 807 (823)
Q Consensus 793 ~~~~~~~~~~~~~~~ 807 (823)
+.+++.++.+|+..+
T Consensus 447 eay~eale~dp~~~e 461 (539)
T KOG0548|consen 447 EAYQEALELDPSNAE 461 (539)
T ss_pred HHHHHHHhcCchhHH
Confidence 999999999988743
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=5.1e-08 Score=95.55 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=100.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHH----hc
Q 003397 640 SICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFC----RQ 715 (823)
Q Consensus 640 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 715 (823)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...++.++. -.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCc
Confidence 4455677888777776532 25566666777788888888888888887753 33332 222333222 22
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHH
Q 003397 716 GLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKY-KEAMDF 794 (823)
Q Consensus 716 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~ 794 (823)
.++.+|.-+|+++.+. ..++..+++.++.+....|++++|.++++++.+.+.. +..+...++-+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3578888888887654 5567777788888888888888888888887764433 566666777777777777 567778
Q ss_pred HHHHhhcCCCC
Q 003397 795 LSKIKERDDSF 805 (823)
Q Consensus 795 ~~~~~~~~~~~ 805 (823)
+.++....|+.
T Consensus 259 l~qL~~~~p~h 269 (290)
T PF04733_consen 259 LSQLKQSNPNH 269 (290)
T ss_dssp HHHCHHHTTTS
T ss_pred HHHHHHhCCCC
Confidence 88888777764
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=6.3e-06 Score=86.03 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=153.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhh
Q 003397 536 ALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAK----GGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCR 611 (823)
Q Consensus 536 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 611 (823)
.+...|++++|..++++..+.. +.+...+.. ...+.. .+....+.+.... ..............+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 3455666666666666665542 112222221 111211 2333333333322 11122223344445666777888
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHHcCCHhHHHH
Q 003397 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQ-PNL--VTYNNLMDMYARAGKCWKAEE 688 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~ 688 (823)
++++|...+++..+.... +...+..+...|...|++++|..++++....... ++. ..|..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 889999999988887533 5667788888999999999999999998875322 222 345578888999999999999
Q ss_pred HHHHHHHcCC-CCChhHH-H--HHHHHHHhcCCHHHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHcCCChhHHHHH
Q 003397 689 ILKGILKSGG-TPDLVSY-N--TVIKGFCRQGLMQEAMRMLYEMTN---RGIR--PCIFTYNTFVSGYAGQGMFTEIDEV 759 (823)
Q Consensus 689 ~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~~~~~m~~---~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~ 759 (823)
++++...... ....... + .++.-+...|..+.+.++ +.+.. .... .........+.++...|+.++|...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999864322 1112111 1 223333444543333222 22221 1111 1112223567788899999999999
Q ss_pred HHHHHhCCCC-------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 760 IKHMFQHNCK-------P-NELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 760 ~~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
++.+....-. . ..........++.+.|++++|.+.+..+....
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9988752211 1 13333445556779999999999998887544
No 102
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=1.3e-06 Score=87.43 Aligned_cols=218 Identities=13% Similarity=0.023 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHH
Q 003397 296 GLLNEAKEFFAGLKLEG-YVPG--TVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGA 372 (823)
Q Consensus 296 g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 372 (823)
+..+.++.-+.+++... ..|+ ...|..+...|.+.|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44555666666655431 1111 2346666667777777777777777776654 335667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 003397 373 ALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSG 452 (823)
Q Consensus 373 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 452 (823)
..|++..+.... +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777765433 45566666667777777777777777776643 222211122222344566777777775544321
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003397 453 CSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSC---GF---EPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTG 522 (823)
Q Consensus 453 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 522 (823)
.++...+ .+.. ...|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++..+..
T Consensus 196 -~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 1222 223333322 233333211 00 0122456666666666777777777776666543
No 103
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.85 E-value=0.00031 Score=75.49 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=147.4
Q ss_pred ccCChHHHHHHHhhcccCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003397 188 KESRHSIASKLLDLIPLEKYSLDVRAYTSILHA--YSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDR 265 (823)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~ 265 (823)
..+++..|....+.+.+.. |+ ..|..++.+ +.+.|+.++|..+++.....+.. |..|..++-..|...++ .++
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~-~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK-LDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh-hhH
Confidence 3567788887777766542 22 234444554 45889999999999988776544 88899999999998888 799
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----------CHHH
Q 003397 266 ILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAG----------VYSE 335 (823)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~----------~~~~ 335 (823)
|..+|+...+. -|+......+..+|.+.+++.+-.++--++.+. +..+...+=++++.+.+.. -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998876 466778888888999999988766555555543 2223444434444444321 1234
Q ss_pred HHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003397 336 ALSILKEMEDNN-CPPDSVTYNEVVGAYVRAGFYEEGAALI-DTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKM 413 (823)
Q Consensus 336 A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 413 (823)
|.+.++.+.+.+ ---+..-...-...+...|++++|++++ ....+.-...+...-+.-++.+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 556666665543 1111111222233445678899999888 44444434445555566677888888898888888888
Q ss_pred HHCCC
Q 003397 414 KESGC 418 (823)
Q Consensus 414 ~~~~~ 418 (823)
...|.
T Consensus 253 l~k~~ 257 (932)
T KOG2053|consen 253 LEKGN 257 (932)
T ss_pred HHhCC
Confidence 88754
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=2.6e-05 Score=92.75 Aligned_cols=157 Identities=9% Similarity=-0.069 Sum_probs=77.5
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 003397 432 LGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGF------EPD--RDTFNTLISAYG 503 (823)
Q Consensus 432 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~ 503 (823)
....|+.+.+...++.+.......+..........+...|+.+++..++....+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 444566666666655542111111122222233344566777777777766543210 001 111122233455
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHc
Q 003397 504 RCGSGVDATKMFEDMMKTGFTPCV----TTYNAFLNALARRGDWKAAESVILDMQNKGF---KP--SETSFSLMLNCYAK 574 (823)
Q Consensus 504 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~ 574 (823)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.....- .+ ....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 677888888877776652111111 2334455566677888888777777654210 00 11233344445566
Q ss_pred cCChhHHHHHHHHH
Q 003397 575 GGNLKGIRKIEKEI 588 (823)
Q Consensus 575 ~~~~~~a~~~~~~~ 588 (823)
.|+++.|.....+.
T Consensus 544 ~G~~~~A~~~~~~a 557 (903)
T PRK04841 544 QGFLQAAYETQEKA 557 (903)
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666655443
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=8.4e-05 Score=70.38 Aligned_cols=193 Identities=13% Similarity=0.105 Sum_probs=98.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 003397 606 VNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWK 685 (823)
Q Consensus 606 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 685 (823)
.+...|+...++.....+++.. .-|...+..-..+|...|++..|+.-++..-+..-. +...+.-+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHH
Confidence 3344455555555555555432 224444555555555566666665555555443322 33344444555555566665
Q ss_pred HHHHHHHHHHcCCCCChhH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHH---HHHHHHHH
Q 003397 686 AEEILKGILKSGGTPDLVS----YNTV---------IKGFCRQGLMQEAMRMLYEMTNRGIRPC--IFT---YNTFVSGY 747 (823)
Q Consensus 686 A~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~---~~~l~~~~ 747 (823)
++...++-++. .||... |-.+ +....+.++|.++++..+...+. .|. .+. +..+-.++
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecc
Confidence 55555555543 333211 1110 11223445555555555555542 222 111 23344455
Q ss_pred HcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 748 AGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 748 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
...|++-+|++...+.++ +.| |..++.--+.+|.-...+++|+.-|+++.+.++++.
T Consensus 318 ~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 566666666666666665 334 355666666666666666666666666666666553
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.81 E-value=3.2e-05 Score=80.71 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=40.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhc
Q 003397 324 LQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGL-MPNA--VTYTTLIDAYGRA 400 (823)
Q Consensus 324 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~--~~~~~li~~~~~~ 400 (823)
...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .++. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334444555555555555554432 22233444444455555555555555554443311 1111 2233444445555
Q ss_pred CCHHHHHHHHHHH
Q 003397 401 GKVNKALRLLNKM 413 (823)
Q Consensus 401 g~~~~A~~~~~~~ 413 (823)
|++++|..++++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=0.00015 Score=68.72 Aligned_cols=206 Identities=13% Similarity=0.059 Sum_probs=123.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHH
Q 003397 322 SLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEV---VGAYVRAGFYEEGAALIDTMSSKGLMPNAVTY-TTLIDAY 397 (823)
Q Consensus 322 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~ 397 (823)
.+...+...|++.+|+.-|...++. |...|.++ ...|...|+...|+.=+.+.++. +||-..- -.-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3555566677777777777777654 22333332 34566677777777777766664 4443211 1122345
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 003397 398 GRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVN 477 (823)
Q Consensus 398 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 477 (823)
.+.|.++.|..=|+.++.... +.. ....++.+.-..++-+.+ ...+..+...|+...|.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~--s~~---~~~eaqskl~~~~e~~~l----------------~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEP--SNG---LVLEAQSKLALIQEHWVL----------------VQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCC--Ccc---hhHHHHHHHHhHHHHHHH----------------HHHHHHHhcCCchhhHH
Confidence 677888888888877776532 111 111111111111222111 22233455677777788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003397 478 QVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNK 556 (823)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 556 (823)
.....+++.. ..|...|..-..+|...|+...|+.-++...+..- -+..++..+-..+...|+.+.++..+++.++.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 8777777763 56677777777888888888888877776665432 35566666667777888888888887777664
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.2e-05 Score=73.45 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=114.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 003397 620 FQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT 699 (823)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 699 (823)
.+.+.......+......-...|.+.|++++|.+...... +......=+..+.+..+++-|.+.+++|.+- .
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--d 167 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI--D 167 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--c
Confidence 4444444333333333344456778888888888776522 2233333344556777788888888888763 2
Q ss_pred CChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 003397 700 PDLVSYNTVIKGFCR----QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTY 775 (823)
Q Consensus 700 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 775 (823)
+..+.+-|..++.+ .+++.+|.-+|++|-++ ..|+..+.+..+-++...|++++|..+++.++....+ +..+.
T Consensus 168 -ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL 244 (299)
T KOG3081|consen 168 -EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL 244 (299)
T ss_pred -hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence 44555555555543 34688888888888765 6778888888888888888888888888888876544 56666
Q ss_pred HHHHHHHHhcCChHHH-HHHHHHHhhcCCCC
Q 003397 776 KIVVDGYCKARKYKEA-MDFLSKIKERDDSF 805 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~ 805 (823)
..++-+-...|.-.++ .+.+.++....|+.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 6666666666655444 47778888877774
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.75 E-value=2.3e-06 Score=79.19 Aligned_cols=163 Identities=7% Similarity=0.095 Sum_probs=115.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003397 639 LSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLM 718 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 718 (823)
+..|...|+++.+....+.+.. |. ..|...++.+++...+++..+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456777777765444322221 10 01223566778888888877754 44778888888999999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HcCCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003397 719 QEAMRMLYEMTNRGIRP-CIFTYNTFVSGY-AGQGM--FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDF 794 (823)
Q Consensus 719 ~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 794 (823)
++|...|++..+. .| +...+..+..++ ...|+ .++|.++++++++.+.. +...+..++..+.+.|++++|..+
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999988883 45 466677777764 56676 48999999999986544 678888899999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHH
Q 003397 795 LSKIKERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~l~~~~~~ 819 (823)
++++++..|..++. ...+ ..|+.
T Consensus 167 ~~~aL~l~~~~~~r-~~~i-~~i~~ 189 (198)
T PRK10370 167 WQKVLDLNSPRVNR-TQLV-ESINM 189 (198)
T ss_pred HHHHHhhCCCCccH-HHHH-HHHHH
Confidence 99999888886644 3333 44543
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.5e-06 Score=88.05 Aligned_cols=258 Identities=9% Similarity=0.044 Sum_probs=151.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003397 467 CGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAA 546 (823)
Q Consensus 467 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 546 (823)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+.+.++.... +....-.|...|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 466777888887887777664 445677877777777777777888888888776533 677777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC
Q 003397 547 ESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH 626 (823)
Q Consensus 547 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 626 (823)
+..+++.+....+ .. .+.. -...++....
T Consensus 373 l~~L~~Wi~~~p~--y~---~l~~-a~~~~~~~~~--------------------------------------------- 401 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK--YV---HLVS-AGENEDFENT--------------------------------------------- 401 (579)
T ss_pred HHHHHHHHHhCcc--ch---hccc-cCccccccCC---------------------------------------------
Confidence 8888777654321 00 0000 0000000000
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHH
Q 003397 627 GYKPDLVIFNSMLSICAKNSMYDRANEMLHLI-LESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSY 705 (823)
Q Consensus 627 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 705 (823)
+-.++.. .+....++|-++ ...+...|..+...|.-.|.-.|++++|.+.|+.++... +-|...|
T Consensus 402 ~s~~~~~-------------~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lW 467 (579)
T KOG1125|consen 402 KSFLDSS-------------HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLW 467 (579)
T ss_pred cCCCCHH-------------HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHH
Confidence 0001111 112222333332 333333556666666666777777777777777776642 2245667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC---------CCCCCHHHH
Q 003397 706 NTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQH---------NCKPNELTY 775 (823)
Q Consensus 706 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~ 775 (823)
|.|...++...+.++|+..|.+.++ +.|+ ......|.-+|...|.+++|.+.|-.++.. +..++..+|
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw 545 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIW 545 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHH
Confidence 7777777766677777777777776 5666 233445555677777777777766666531 111234566
Q ss_pred HHHHHHHHhcCChHHHHH
Q 003397 776 KIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A~~ 793 (823)
..|=.++...++.+-+.+
T Consensus 546 ~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 546 QTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHcCCchHHHH
Confidence 666666666666664443
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=8.6e-05 Score=88.33 Aligned_cols=374 Identities=12% Similarity=-0.024 Sum_probs=187.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 003397 359 VGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRS 438 (823)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 438 (823)
...+...|++.+|...+........ -..............|+++.+..+++.+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 3445566666666554433211100 00111112233445677777777776652211111222233445556678899
Q ss_pred HHHHHHHHHhhhCC--C----CCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 003397 439 EEMMKILCDMKSSG--C----SPNR--ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDR----DTFNTLISAYGRCG 506 (823)
Q Consensus 439 ~~a~~~~~~~~~~~--~----~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~ 506 (823)
+++...+......- . .+.. .....+...+...|+++.|...++...+.--..+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99998888765421 0 1111 11122223456789999999999887663111121 23455666677899
Q ss_pred ChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHc
Q 003397 507 SGVDATKMFEDMMKT----GFT-PCVTTYNAFLNALARRGDWKAAESVILDMQNK----GFK--P-SETSFSLMLNCYAK 574 (823)
Q Consensus 507 ~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~ 574 (823)
++++|...+++.... |.. .....+..+...+...|++++|...+.+.... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999887642 111 11234555667788999999999998886542 111 0 11222233334444
Q ss_pred cCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 003397 575 GGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEM 654 (823)
Q Consensus 575 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 654 (823)
.|++++|.......... ....+.......+..+...+...|++++|.+.
T Consensus 586 ~G~~~~A~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 634 (903)
T PRK04841 586 WARLDEAEQCARKGLEV-------------------------------LSNYQPQQQLQCLAMLAKISLARGDLDNARRY 634 (903)
T ss_pred hcCHHHHHHHHHHhHHh-------------------------------hhccCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555444433110 00001000112333344455556666666666
Q ss_pred HHHHHHcCCCC-CHHHH-----HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHH
Q 003397 655 LHLILESGMQP-NLVTY-----NNLMDMYARAGKCWKAEEILKGILKSGGTPDL---VSYNTVIKGFCRQGLMQEAMRML 725 (823)
Q Consensus 655 ~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 725 (823)
++.+....... ....+ ...+..+...|+.+.|...+............ ..+..+..++...|+.++|...+
T Consensus 635 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l 714 (903)
T PRK04841 635 LNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIIL 714 (903)
T ss_pred HHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65554321000 00000 01112334456666666665554321111010 11234455566666666666666
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 726 YEMTNR----GIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 726 ~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
++..+. |...+ ..++..+..++...|+.++|...+.++++
T Consensus 715 ~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 715 EELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 665542 22221 23345555666666777777666666665
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.70 E-value=1.3e-06 Score=85.72 Aligned_cols=250 Identities=11% Similarity=0.031 Sum_probs=152.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 003397 501 AYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKG 580 (823)
Q Consensus 501 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (823)
-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+....+.+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445566666664444 211111112334445556777777766443 2332222 4454444444433333233333
Q ss_pred HHHHHHHHHhCCCC-ChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 003397 581 IRKIEKEIYAGRIF-PSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLIL 659 (823)
Q Consensus 581 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 659 (823)
+..-.+........ .+....-..+.++...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333332222222 23333334445667788888888877642 366777788899999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHH--Hc--CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003397 660 ESGMQPNLVTYNNLMDMYA--RA--GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP 735 (823)
Q Consensus 660 ~~~~~~~~~~~~~l~~~~~--~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 735 (823)
+.+ .| .+...|..++. .. +.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.+ +-
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 753 23 33444444443 23 3699999999998765 56788899999999999999999999999987643 23
Q ss_pred CHHHHHHHHHHHHcCCCh-hHHHHHHHHHHhC
Q 003397 736 CIFTYNTFVSGYAGQGMF-TEIDEVIKHMFQH 766 (823)
Q Consensus 736 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 766 (823)
|..++..++.+....|+. +.+.+++.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 567788888888888887 6778888888863
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=3e-06 Score=82.29 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=52.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 742 TFVSGYAGQGMFTEIDEVIKHMFQHNC-KP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 742 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
.+...+.+.|++++|+..++++++... .| ....+..++.++.+.|++++|..+++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456678899999999999999987532 22 3578889999999999999999999998877664
No 114
>PLN02789 farnesyltranstransferase
Probab=98.68 E-value=2.7e-05 Score=77.55 Aligned_cols=183 Identities=11% Similarity=0.093 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 003397 612 ALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMY--DRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEI 689 (823)
Q Consensus 612 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 689 (823)
.++++...++++.+.+.+ +..+|+.-...+.+.|+. ++++.+++.+++...+ +..+|+....++.+.|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 456777777777776544 555677666556666653 6788888888887654 788888888888889999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhc---CC----HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC----CChhHHH
Q 003397 690 LKGILKSGGTPDLVSYNTVIKGFCRQ---GL----MQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQ----GMFTEID 757 (823)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~ 757 (823)
++++++.+.. |..+|+....++.+. |. .++++.+..+++.. .| |...|+.+...+... ++..+|.
T Consensus 165 ~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 165 CHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 9999887544 667787776666554 22 35677777777774 34 466777777777763 4456788
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC------------------ChHHHHHHHHHHhh
Q 003397 758 EVIKHMFQHNCKPNELTYKIVVDGYCKAR------------------KYKEAMDFLSKIKE 800 (823)
Q Consensus 758 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~ 800 (823)
+.+.+..+.++. +......|++.|+... ..++|.++++.+.+
T Consensus 242 ~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 242 SVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred HHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 888887764433 5667888888888642 33678888888843
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.5e-05 Score=81.12 Aligned_cols=261 Identities=13% Similarity=0.128 Sum_probs=182.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003397 429 LGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSG 508 (823)
Q Consensus 429 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 508 (823)
..-+.+.|++.+|.-.|+..++.... +...|..|......+++...|+..+++..+.. +-+......|...|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34567899999999999999887322 67789988888999999999999999998875 55678888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 003397 509 VDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEI 588 (823)
Q Consensus 509 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 588 (823)
.+|++.++..+...++ |..+..+ ...++++.- +-.++...+.-+
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~~----------~s~~~~~~l~~i-------------------- 413 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSA-GENEDFENT----------KSFLDSSHLAHI-------------------- 413 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhcccc-CccccccCC----------cCCCCHHHHHHH--------------------
Confidence 9999999988765322 1111100 001111100 011222222211
Q ss_pred HhCCCCChHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 003397 589 YAGRIFPSWMLLRTLILVNFKCRALQGMERAF-QELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNL 667 (823)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 667 (823)
.++| +.....+..+|..+...|.-.|--.|++++|++.|+.++...+. |.
T Consensus 414 ----------------------------~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~ 464 (579)
T KOG1125|consen 414 ----------------------------QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DY 464 (579)
T ss_pred ----------------------------HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hH
Confidence 1222 22334444467778888888888899999999999999986543 78
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C------CCCCH
Q 003397 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNR---G------IRPCI 737 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~------~~p~~ 737 (823)
..||.|...++...+..+|+..|++.++. .|+- .++..|.-.|...|.+++|.+.|-+.+.. + ..++.
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se 542 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASE 542 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchH
Confidence 89999999999999999999999999884 5654 35555677888899999999988876642 1 11233
Q ss_pred HHHHHHHHHHHcCCChhHHHH
Q 003397 738 FTYNTFVSGYAGQGMFTEIDE 758 (823)
Q Consensus 738 ~~~~~l~~~~~~~g~~~~A~~ 758 (823)
.+|.+|=.++...++.|-+.+
T Consensus 543 ~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 543 NIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHHHcCCchHHHH
Confidence 466666666666666554443
No 116
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=6e-08 Score=100.08 Aligned_cols=11 Identities=55% Similarity=1.093 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q 003397 3 GTIFPNRPVPP 13 (823)
Q Consensus 3 ~~~~~~~~~~~ 13 (823)
|.|+||||+||
T Consensus 525 ~~iP~PP~~pp 535 (1102)
T KOG1924|consen 525 GGIPPPPPLPP 535 (1102)
T ss_pred CCCCCCCCCCC
Confidence 44555555443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2.1e-06 Score=89.28 Aligned_cols=219 Identities=15% Similarity=0.098 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHH
Q 003397 525 PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLI 604 (823)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 604 (823)
|--..-..+...+...|-...|..+++++ ..|..++.+|+..|+..+|..+..+... -.++...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 33334455566677777777777777543 5667777777777777777666655544 334445555555
Q ss_pred HHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 003397 605 LVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCW 684 (823)
Q Consensus 605 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 684 (823)
+......-+++|.++++..... +-..+.....+.++++++.+.|+...+.+. --..+|..+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhH
Confidence 5555555555665555543221 111111222235666666666666555432 14455666666666666666
Q ss_pred HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 003397 685 KAEEILKGILKSGGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHM 763 (823)
Q Consensus 685 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 763 (823)
.|.+.|...... .| +...||.+..+|.+.++-.+|...+++..+.+ .-+-..|-+.+....+.|.+++|++.+.++
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 666666666553 33 33566666666666666666666666666654 223444555555556666666666666666
Q ss_pred Hh
Q 003397 764 FQ 765 (823)
Q Consensus 764 ~~ 765 (823)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 53
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.5e-05 Score=73.18 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=124.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003397 636 NSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQ 715 (823)
Q Consensus 636 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 715 (823)
..+...+...|+-+.+..+........ ..|......++....+.|++.+|...+++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 455566667777777777776655432 235566666888888999999999999999875 356888999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003397 716 GLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDF 794 (823)
Q Consensus 716 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 794 (823)
|++++|..-|.+..+ +.|+ ...++.|.-.+.-.|+++.|..++......+.. |..+-..|.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999888 4454 566788888888899999999999998875433 677778888889999999999888
Q ss_pred HHHHh
Q 003397 795 LSKIK 799 (823)
Q Consensus 795 ~~~~~ 799 (823)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76544
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=3.7e-06 Score=73.46 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003397 688 EILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
.++++.++. .|+ .+..+...+...|++++|...|+..+.. .| +...|..+..++...|++++|+..|+++.+.
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555543 233 3445666777778888888888877763 33 4566777777788888888888888888774
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 767 NCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 767 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
+.. +...+..++.++...|++++|...++++.+..|++..
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 432 5677777888888888888888888888888777644
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=9.4e-08 Score=58.62 Aligned_cols=32 Identities=50% Similarity=0.920 Sum_probs=15.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003397 382 GLMPNAVTYTTLIDAYGRAGKVNKALRLLNKM 413 (823)
Q Consensus 382 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 413 (823)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=2.9e-06 Score=74.08 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 003397 689 ILKGILKSGGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 689 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
.++++.+. .| +......++..+...|++++|...|+++.+.+ +.+...+..+..++...|++++|...+++.++.+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555553 33 34556667788888999999999999888742 3356778888888989999999999999988754
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 003397 768 CKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREILE 822 (823)
Q Consensus 768 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 822 (823)
.. +...+..++.+|...|++++|..+++++.+.+|++. ....+.+++.+.+|
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIEICGENP--EYSELKERAEAMLE 133 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHh
Confidence 32 677788889999999999999999999999998754 44555555555554
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=0.00015 Score=76.08 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003397 489 EPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLM 568 (823)
Q Consensus 489 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 568 (823)
+|-...-..+...+...|-...|..+++++. .|..+|.+|...|+..+|..+..+..+ -+|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3434444566777788888888888887654 467778888888888888888877776 36777888887
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 003397 569 LNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMY 648 (823)
Q Consensus 569 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 648 (823)
.+......-+++|.++.+.... ..-+.+.......++++++.+.|+.-.+... ....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 7777777777777777665521 1222333334456888888888887665532 2456888888888899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003397 649 DRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEM 728 (823)
Q Consensus 649 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 728 (823)
+.|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+-|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999998875432 56789999999999999999999999999876 446677888888888999999999999998
Q ss_pred HH
Q 003397 729 TN 730 (823)
Q Consensus 729 ~~ 730 (823)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 86
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=5.6e-05 Score=84.55 Aligned_cols=185 Identities=11% Similarity=0.138 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003397 495 FNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAK 574 (823)
Q Consensus 495 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 574 (823)
|.++++.-...|.-+...++|+++.+.. -....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhc
Confidence 3344443334444444555555554421 12334455555555555555555555555543 22344445555555555
Q ss_pred cCChhHHHHHHHHHHhCCCC-ChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 003397 575 GGNLKGIRKIEKEIYAGRIF-PSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANE 653 (823)
Q Consensus 575 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 653 (823)
..+-+.|+.+..+....-+. .+..+....+...+++|+-+.+..+|+.+....++ -...|+..+++-.++|+.+.++.
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHH
Confidence 55444444444443222221 13334455555566666666666666666554322 34566777776667777777777
Q ss_pred HHHHHHHcCCCCCH--HHHHHHHHHHHHcCCH
Q 003397 654 MLHLILESGMQPNL--VTYNNLMDMYARAGKC 683 (823)
Q Consensus 654 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 683 (823)
+|++++..++.+.. +.|...+..--..|+-
T Consensus 1656 lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 77777766654422 2334444433333443
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=7.3e-05 Score=83.65 Aligned_cols=229 Identities=10% Similarity=0.153 Sum_probs=177.9
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003397 349 PPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSK-GLM---PNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCT 424 (823)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 424 (823)
+.....|-..|......++.++|.+++++.... ++. --...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445677888899999999999999999998765 111 12346777887777788889999999999875 223567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 003397 425 YNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPD---RDTFNTLISA 501 (823)
Q Consensus 425 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 501 (823)
|..|...|.+.+.+++|.++|+.|.++ ..-....|...+..+.+.++-+.|..++.+..+. .|. .......+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 888999999999999999999999886 2246788999999999999999999999998775 333 3344455566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChh
Q 003397 502 YGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSE--TSFSLMLNCYAKGGNLK 579 (823)
Q Consensus 502 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~ 579 (823)
-.+.|+.+.+..+|+..+... +.-...|+.+++.-.++|+.+.+..+|++....++.+-. ..|...+..-.+.|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 678999999999999998763 336789999999999999999999999999998776543 34455555545555555
Q ss_pred HHHH
Q 003397 580 GIRK 583 (823)
Q Consensus 580 ~a~~ 583 (823)
.++.
T Consensus 1689 ~vE~ 1692 (1710)
T KOG1070|consen 1689 NVEY 1692 (1710)
T ss_pred hHHH
Confidence 4443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=7.8e-05 Score=68.33 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=73.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003397 268 GLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNN 347 (823)
Q Consensus 268 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 347 (823)
++.+.+......-+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 344444433333332333333345666667776666655411 2222333344555666666666666666653
Q ss_pred CCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003397 348 CPPDSVTYNEVVGAYVR----AGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKES 416 (823)
Q Consensus 348 ~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 416 (823)
.+..|.+.|..+|++ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 244555555555554 33455666666666553 3445555555555566666666666666666554
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=5e-05 Score=84.39 Aligned_cols=237 Identities=13% Similarity=0.128 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003397 492 RDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNC 571 (823)
Q Consensus 492 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 571 (823)
...+..|+..|...+++++|.++.+...+.. +-....|..+...+.+.++.+++..+ .+.+. .+...-|..+-..
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve~~ 105 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVEHI 105 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHHHH
Confidence 4556666666666777777777766555432 11223333333355555555554444 22211 1111111111111
Q ss_pred HHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 003397 572 YAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRA 651 (823)
Q Consensus 572 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 651 (823)
|...++ ...+..++..++.+|.+.|+.+++..+|+++.+..+. |..+.|.+...|+.. ++++|
T Consensus 106 ~~~i~~---------------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 106 CDKILL---------------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred HHHHHh---------------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 111111 1112234555666666666666666666666666532 566666666666666 67777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003397 652 NEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
.+++.+++.. |...+++..+.++|.++.... |+ +++.-..+.+.+...
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~~~ 216 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVLGH 216 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHHhh
Confidence 6666666542 444556666666666666542 11 122222333333332
Q ss_pred -CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003397 732 -GIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC 783 (823)
Q Consensus 732 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 783 (823)
|..--..++..+-..|....+|++++.+++.+++.... |.....-++.+|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22223345555666777788889999999999885443 6677777777776
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=2.7e-05 Score=72.07 Aligned_cols=118 Identities=11% Similarity=0.052 Sum_probs=74.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHH-HhcCC--HHHH
Q 003397 645 NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGF-CRQGL--MQEA 721 (823)
Q Consensus 645 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 721 (823)
.++.+++...++..++.... |...|..|...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666665433 66667777777777777777777777766653 22555566666553 45555 4677
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003397 722 MRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 722 ~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
.+++++.++. .| +...+..+...+...|++++|+..++++++.
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777663 33 3455666666677777777777777777664
No 128
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.0001 Score=73.59 Aligned_cols=127 Identities=9% Similarity=0.038 Sum_probs=56.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 003397 288 VISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAG-VYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAG 366 (823)
Q Consensus 288 ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 366 (823)
+-..+...++.++|+...+.+++.. +-+..+|+.-..++.+.| .+++++..++++...+ +.+..+|+.-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3333444455555555555555441 112223443333444444 3455555555554432 223334443333333333
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003397 367 FY--EEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESG 417 (823)
Q Consensus 367 ~~--~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 417 (823)
+. +++..+++++.+.... |..+|+...-++...|+++++++.++++++.+
T Consensus 121 ~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred chhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 31 3444445454444333 44445544444445555555555555555443
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.7e-07 Score=57.47 Aligned_cols=32 Identities=44% Similarity=0.825 Sum_probs=17.7
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003397 347 NCPPDSVTYNEVVGAYVRAGFYEEGAALIDTM 378 (823)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (823)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00015 Score=72.60 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=111.7
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHH
Q 003397 641 ICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD-LVSYNTVIKGFCRQGLMQ 719 (823)
Q Consensus 641 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 719 (823)
.+...|.+++|+..++.++..-+ -|...+....+.+.+.++..+|.+.++++... .|+ ...+-.+..+|.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 34467788888888888777543 26666677777888888888888888888875 444 556667778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 720 EAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 720 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
+|+.+++..... .+-|...|..|..+|...|+..++.... ...|...|++++|+.+++.+.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence 888888887764 4456778888888888888876665433 345566788888888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHH
Q 003397 800 ERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 800 ~~~~~~~~~~~~~l~~~~~~ 819 (823)
+...-+ ...|.+..++|..
T Consensus 453 ~~~~~~-~~~~aR~dari~~ 471 (484)
T COG4783 453 QQVKLG-FPDWARADARIDQ 471 (484)
T ss_pred HhccCC-cHHHHHHHHHHHH
Confidence 766322 3455555555543
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=7.6e-05 Score=82.34 Aligned_cols=131 Identities=8% Similarity=0.001 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 003397 632 LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKG 711 (823)
Q Consensus 632 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 711 (823)
...+-.|.....+.|.+++|..+++.+.+..+. +......+...+.+.+++++|+..+++..... +-+......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 344444444444455555555555554443221 23333444444444555555555555444432 1133344444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 712 FCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 712 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+.+.|++++|..+|+++... ..-+..++..+..++...|+.++|...|+++++
T Consensus 164 l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555554441 111234444444444445555555555555443
No 132
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=4.1e-05 Score=74.29 Aligned_cols=166 Identities=10% Similarity=-0.014 Sum_probs=101.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 003397 600 LRTLILVNFKCRALQGMERAFQELQKHGYK-PD-LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNL--VTYNNLMD 675 (823)
Q Consensus 600 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~ 675 (823)
+..++..+...|++++|...|+++.+.... +. ..++..+..++...|++++|...++.+++....... .++..+..
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~ 115 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL 115 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH
Confidence 334444555556666666666665554221 11 124455556666666666666666666654322111 13344444
Q ss_pred HHHHc--------CCHhHHHHHHHHHHHcCCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 676 MYARA--------GKCWKAEEILKGILKSGGTPDLVSY-----------------NTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 676 ~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
++.+. |+.++|.+.|+++.+.... +...+ ..+...|.+.|++++|+..+++.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 116 SNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44443 5566666666666654211 11111 2456678889999999999999988
Q ss_pred cCC-CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003397 731 RGI-RP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 731 ~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
..- .| ....+..++.++.+.|++++|..+++.+...
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 421 12 2467889999999999999999999988754
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=0.00016 Score=80.55 Aligned_cols=229 Identities=12% Similarity=0.085 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHH
Q 003397 525 PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSET-SFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTL 603 (823)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 603 (823)
.+...+..|+..+...+++++|.++.+...+. .|+.. .|..+...+.+.++..++..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35678899999999999999999999977765 34333 333333355566655443332 23
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003397 604 ILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKC 683 (823)
Q Consensus 604 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 683 (823)
+.......++.-...+...+.+.+ -+..++..+..+|.+.|+.++|..+|+++++.... |..+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 333333444444444455555432 24447777888888888888888888888887643 778888888888888 88
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 003397 684 WKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHM 763 (823)
Q Consensus 684 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 763 (823)
++|.+++.+.... |...+++.++.++|.++.+. .|+.. +.-.++.+++
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHH
Confidence 8888888877653 55566788888888888874 33322 2222333333
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003397 764 FQH-NCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 764 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
... |..--..++.-+...|...++|+++..+++.+++.+|.+..-
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 321 222234556667778888999999999999999999998554
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.00036 Score=63.63 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=131.1
Q ss_pred ChhHHHHHHHHH----HhCCCCC-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHH
Q 003397 577 NLKGIRKIEKEI----YAGRIFP-SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDL-VIFNSMLSICAKNSMYDR 650 (823)
Q Consensus 577 ~~~~a~~~~~~~----~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 650 (823)
+.++..++...+ ..+...+ -+.++..+.-+...+|+.+.|...++++...- |.+ .+-..-...+...|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 445555555544 2222333 34566677777778899999999999988773 333 222222233556889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 651 ANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 651 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
|.++++.+++.+. .|..++..=+.+.-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++=
T Consensus 105 A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999998763 36777776666777788888898888888876 667889999999999999999999999999886
Q ss_pred cCCCCC-HHHHHHHHHHHHcCC---ChhHHHHHHHHHHhC
Q 003397 731 RGIRPC-IFTYNTFVSGYAGQG---MFTEIDEVIKHMFQH 766 (823)
Q Consensus 731 ~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 766 (823)
+.|- ...+..+...+.-.| +++-|.++|.+.++.
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4454 445566766655444 566788888888874
No 135
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=4.3e-05 Score=66.78 Aligned_cols=91 Identities=5% Similarity=-0.186 Sum_probs=43.2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 003397 673 LMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGM 752 (823)
Q Consensus 673 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 752 (823)
+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|++..+.+ +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444445555555555555544432 1234444445555555555555555555555421 1133444445555555555
Q ss_pred hhHHHHHHHHHHh
Q 003397 753 FTEIDEVIKHMFQ 765 (823)
Q Consensus 753 ~~~A~~~~~~~~~ 765 (823)
+++|++.++..++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555554
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.2e-05 Score=75.21 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=86.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 003397 710 KGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARK 787 (823)
Q Consensus 710 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 787 (823)
.-+.+.+++++|+..|.+.++ +.|. .+.|-.-..+|++.|.++.|++-.+..+. +.|+ ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 346678999999999999998 5665 55567778899999999999999999988 5554 7789999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003397 788 YKEAMDFLSKIKERDDSFNDESVKRLTFRVREIL 821 (823)
Q Consensus 788 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 821 (823)
+++|.+.|+++++++|++. +|+.=++..+..+
T Consensus 165 ~~~A~~aykKaLeldP~Ne--~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNE--SYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHhhhccCCCcH--HHHHHHHHHHHHh
Confidence 9999999999999999975 5555555555444
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.00025 Score=71.17 Aligned_cols=131 Identities=10% Similarity=0.051 Sum_probs=112.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 003397 671 NNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAG 749 (823)
Q Consensus 671 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 749 (823)
....-.+...|++++|+..++.+++. .+-|...+....+.+.+.++.++|.+.+++++. ..|+ .....++..+|.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHh
Confidence 34444566789999999999999876 345777788888999999999999999999998 4677 5567888999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 750 QGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 750 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
.|+..+|+.+++........ |...|..|.++|...|+..+|.....+.....-..
T Consensus 387 ~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred cCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 99999999999999876443 89999999999999999999999999988777664
No 138
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00021 Score=65.72 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003397 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
|.......+....+.|++.+|...+.+..... ++|...|+.+.-+|.+.|+++.|..-|.+..+.- .-+...+|.+..
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence 55666678888889999999999999999865 4599999999999999999999999999999863 336678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 711 GFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
.|.-.|+.+.|..++......+ .-|...-..|..+....|++++|..+...-+
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999999999999999998753 2367777888889999999999999876654
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=0.00043 Score=76.54 Aligned_cols=135 Identities=11% Similarity=0.028 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003397 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD-LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTF 743 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 743 (823)
+...+..|.....+.|++++|..+++...+. .|+ ...+..++.++.+.+++++|+..+++..+. .|+ ......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 5666666666677777777777777777664 333 345556666677777777777777776663 444 3344556
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 744 VSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 744 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
..++.+.|++++|+.+|+++...+.. +..++..+..++.+.|+.++|...|+++.+....-
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 66666777777777777777663322 35666677777777777777777777776655443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.17 E-value=9.5e-05 Score=65.00 Aligned_cols=125 Identities=19% Similarity=0.170 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 003397 670 YNNLMDMYARAGKCWKAEEILKGILKSGGTPD---LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC--IFTYNTFV 744 (823)
Q Consensus 670 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~ 744 (823)
|..++..+ ..++...+...++.+.+.... + ....-.+...+...|++++|...|+...+....++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444444 367777777777777765222 2 12333455677778888888888888887542222 12345567
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003397 745 SGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKI 798 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 798 (823)
.++...|++++|+..++...... .....+..++++|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888888888888886643322 23456677888888888888888888765
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=8.4e-05 Score=75.53 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003397 671 NNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ 750 (823)
Q Consensus 671 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 750 (823)
.+|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|++++++.++. .+-+...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 455666667778888888888887652 44 3345667777777778888888887764 223455566666777788
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 751 GMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 751 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
++++.|+++.+++.+. .| +..+|..|+.+|.+.|++++|+..++.++-..
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888888888874 44 46688888888888888888888888777543
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.13 E-value=0.00012 Score=63.69 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=45.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003397 635 FNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR 714 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 714 (823)
...+...+...|++++|.+.++.+...+.. +...+..+...|.+.|++++|..++++..+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 333444444555555555555555443321 44444455555555555555555555544432 2233444444445555
Q ss_pred cCCHHHHHHHHHHHHH
Q 003397 715 QGLMQEAMRMLYEMTN 730 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~ 730 (823)
.|++++|+..|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.09 E-value=0.00015 Score=62.01 Aligned_cols=113 Identities=10% Similarity=-0.040 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDG 781 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 781 (823)
...-.+...+...|++++|.++|+-+.. +.|. ...|..|.-+|-..|++++|+..|..+...++. |...+..++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3444566677889999999999998887 4444 556788888888999999999999999986543 78888899999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 003397 782 YCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREI 820 (823)
Q Consensus 782 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 820 (823)
|...|+.+.|++.++.+....-+ ...+..+.++-+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~--~~~~~~l~~~A~~~ 149 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGE--VSEHQILRQRAEKM 149 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcc--ChhHHHHHHHHHHH
Confidence 99999999999999999887743 33445554444433
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0033 Score=57.58 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=143.8
Q ss_pred HcCCHHHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhH
Q 003397 539 RRGDWKAAESVILDMQNK---G-FKPSETS-FSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRAL 613 (823)
Q Consensus 539 ~~g~~~~a~~~~~~m~~~---~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 613 (823)
...+.++..+++.++... | ..++..+ +-.++-+....|..+.|...++.+...- ..+..+...-+..+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 456788999998888653 3 4455544 4456667778888999998888876554 44455555556667788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 003397 614 QGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGI 693 (823)
Q Consensus 614 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 693 (823)
++|+++|+.+.+.++ .|..++---+...-..|+.-+|++-+....+.- ..|...|--+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998863 366677766666777888889999888888764 349999999999999999999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 003397 694 LKSGGTPDLVSYNTVIKGFCRQG---LMQEAMRMLYEMTN 730 (823)
Q Consensus 694 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 730 (823)
+-.. +.+...+..+.+.+...| +++-|.++|.+.++
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8652 346666777777766655 56778899999887
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00025 Score=62.39 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=89.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh--hHHHHHHH
Q 003397 635 FNSMLSICAKNSMYDRANEMLHLILESGMQP--NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDL--VSYNTVIK 710 (823)
Q Consensus 635 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~ 710 (823)
|..++..+ ..++...+...++.+.+..... .......+...+...|++++|...|+.+......++. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 4788888888888888765331 1233445667788899999999999999886533322 34555778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 003397 711 GFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHM 763 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 763 (823)
.+...|++++|+..++..... ......+....++|...|++++|+..|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999774432 233456677888999999999999998875
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=0.00018 Score=61.01 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHH
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP--NELTYKI 777 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ 777 (823)
++..++..+.+.|++++|.+.|+++.+. .|+ ...+..+..++.+.|++++|...++.+....... ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556667777888888888888888764 232 3456667888888888888888888887643221 2456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 778 VVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 778 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
++.++.+.|++++|.++++++.+..|+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 88888888888888888888888888754
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.95 E-value=0.00013 Score=59.01 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003397 705 YNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCK 784 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 784 (823)
+..++..+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++...+.... +...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4456666777788888888887777631 223356666777777778888888888887765432 44567777888888
Q ss_pred cCChHHHHHHHHHHhhcCC
Q 003397 785 ARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 785 ~g~~~~A~~~~~~~~~~~~ 803 (823)
.|++++|.+.++++.+..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888888776665
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0015 Score=64.05 Aligned_cols=181 Identities=13% Similarity=0.009 Sum_probs=112.6
Q ss_pred HHHHHHH-HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhH-------
Q 003397 633 VIFNSML-SICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVS------- 704 (823)
Q Consensus 633 ~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------- 704 (823)
..|..+- .++...|++++|...--.+++.... +......=..++.-.++.+.|...|++.+.. .|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhh
Confidence 3444333 3445677888888777777664321 2222211122334567778888888877764 333221
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHH
Q 003397 705 ------YNTVIKGFCRQGLMQEAMRMLYEMTN---RGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN-ELT 774 (823)
Q Consensus 705 ------~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 774 (823)
+..-..-..+.|++..|.+.|.+.+. .+..++...|.....+..+.|+.++|+.--+++++ +.+. ...
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syika 323 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKA 323 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHH
Confidence 22223344578889999999988886 24455566777778888889999999988888876 3322 333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHH
Q 003397 775 YKIVVDGYCKARKYKEAMDFLSKIKERDDS-FNDESVKRLTFRVR 818 (823)
Q Consensus 775 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 818 (823)
|..-+.++..-++|++|.+.++++.+...+ ....++......|+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 444555667778999999999888766544 23445555555554
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=2e-05 Score=49.32 Aligned_cols=33 Identities=33% Similarity=0.737 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003397 213 AYTSILHAYSKAGKYEKAISLFEKVKEMGLSPT 245 (823)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 245 (823)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999888887
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=3.1e-05 Score=60.53 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003397 715 QGLMQEAMRMLYEMTNRGI-RPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 793 (823)
+|++++|+.+++++.+... .++...+..++.+|.+.|++++|+.++++ .+.+.. +......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5677888888888877422 12344555677888888888888888877 332221 33445566788888888888888
Q ss_pred HHHHH
Q 003397 794 FLSKI 798 (823)
Q Consensus 794 ~~~~~ 798 (823)
+++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77753
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.8e-05 Score=48.69 Aligned_cols=33 Identities=45% Similarity=0.674 Sum_probs=15.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 003397 319 TYNSLLQVFGKAGVYSEALSILKEMEDNNCPPD 351 (823)
Q Consensus 319 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~ 351 (823)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00059 Score=69.49 Aligned_cols=125 Identities=22% Similarity=0.193 Sum_probs=77.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 003397 284 TCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYV 363 (823)
Q Consensus 284 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 363 (823)
....|++.+...++++.|.++|+++.+. .|+ ....+++.+...++-.+|.+++++..... +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444555566667777777777777765 233 33446666666667777777777766542 334555555556666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003397 364 RAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMK 414 (823)
Q Consensus 364 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 414 (823)
+.++++.|+++.+++.+.... +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 667777777777766665322 34466667777777777777766666554
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=2.5e-05 Score=48.48 Aligned_cols=33 Identities=39% Similarity=0.775 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003397 212 RAYTSILHAYSKAGKYEKAISLFEKVKEMGLSP 244 (823)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 244 (823)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.84 E-value=0.00066 Score=61.80 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003397 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGTPD--LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVS 745 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~ 745 (823)
.+..+...|...|++++|...|++..+....+. ...+..++.++.+.|++++|...+++.++. .|+ ...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 445555555566666666666666654322211 234555555666666666666666665552 232 333444455
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 746 GYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
++...|+...+..-++.+.. .+++|.++++++...+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 55555554333332222211 1567778888888777775
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00048 Score=70.69 Aligned_cols=87 Identities=8% Similarity=-0.015 Sum_probs=41.9
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChh
Q 003397 676 MYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFT 754 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 754 (823)
.+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++. .| +...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 3344455555555555555432 113344444455555555555555555555442 22 2334444445555555555
Q ss_pred HHHHHHHHHHh
Q 003397 755 EIDEVIKHMFQ 765 (823)
Q Consensus 755 ~A~~~~~~~~~ 765 (823)
+|+..++++++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=5.9e-05 Score=55.49 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=49.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 743 FVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+...+...|++++|++.|+++++..+. +...+..++.++...|++++|..+++++.+..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456778888999999999999876533 67788888889999999999999999998888875
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=0.071 Score=56.24 Aligned_cols=205 Identities=11% Similarity=0.079 Sum_probs=119.3
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 003397 314 VPGTVTYNSLLQVFGKAGVYSEALSILKEMEDN-NCPP--------DSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLM 384 (823)
Q Consensus 314 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 384 (823)
.|....|..|...-.+.-.++.|+..|-+..+. |++. +...-..=+.+| -|++++|.++|-+|-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 466777887777777777777777776555432 1110 001111112222 478888888887776653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHH
Q 003397 385 PNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCA--PNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNT 462 (823)
Q Consensus 385 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 462 (823)
..|..+.+.||+-...++++.--. +.. --...|+.+...+.....+++|.+.|..-... ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 246677778888777666543211 110 01246777777777777788887777654321 12
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003397 463 MLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGD 542 (823)
Q Consensus 463 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 542 (823)
.+.++....++++.+.+.+. ++-+....-.+.+++.+.|.-++|.+.|-+.. .+ .+.+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHH
Confidence 33444444444443333332 23455566677788888888888877664332 11 234567788888
Q ss_pred HHHHHHHHHHH
Q 003397 543 WKAAESVILDM 553 (823)
Q Consensus 543 ~~~a~~~~~~m 553 (823)
|.+|.++-+..
T Consensus 894 W~~avelaq~~ 904 (1189)
T KOG2041|consen 894 WGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHhc
Confidence 88888876654
No 158
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.072 Score=56.19 Aligned_cols=207 Identities=7% Similarity=-0.026 Sum_probs=111.5
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----H--HHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003397 349 PPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSK-GLMPNAVTYTT----L--IDAYGRAGKVNKALRLLNKMKESGCAPN 421 (823)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~----l--i~~~~~~g~~~~A~~~~~~~~~~~~~~~ 421 (823)
.|....|..+...-...-.++.|+..|-+.... |++.-...-+. + ...-.--|.+++|++++-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 467788888877777777777777766554432 22110000000 0 011112367777777777665542
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003397 422 VCTYNAVLGMLGKKGRSEEMMKILCDMKSS-GCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLIS 500 (823)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 500 (823)
..|..+.+.|++-...++++.--.. .-.--...|+.+...+.....+++|.+.|..-.. -..++.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 2355566667776666655432111 0001134566666666666666666666654321 123455
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 003397 501 AYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKG 580 (823)
Q Consensus 501 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 580 (823)
++.+..++++-..+.+.+. -+....-.+.+++...|.-++|.+.+-+... | ...+.+|....++.+
T Consensus 831 cly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHH
Confidence 5665555555544444433 3556666777778888887777766644321 1 133455666666666
Q ss_pred HHHHHHH
Q 003397 581 IRKIEKE 587 (823)
Q Consensus 581 a~~~~~~ 587 (823)
|.++.+.
T Consensus 897 avelaq~ 903 (1189)
T KOG2041|consen 897 AVELAQR 903 (1189)
T ss_pred HHHHHHh
Confidence 6655444
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.77 E-value=0.00058 Score=69.78 Aligned_cols=122 Identities=15% Similarity=0.185 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHH
Q 003397 279 EFDEFTCSTVISACGREGLLNEAKEFFAGLKLE--GYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYN 356 (823)
Q Consensus 279 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 356 (823)
.-+...+..+++.+....+++++..++-..... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445666677777777777778888877777654 222223455688888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003397 357 EVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRA 400 (823)
Q Consensus 357 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 400 (823)
.+|..+.+.|++..|.++...|...+.-.+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888877776666667776666666555
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.76 E-value=0.00011 Score=54.61 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=51.7
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003397 748 AGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFR 816 (823)
Q Consensus 748 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 816 (823)
...|++++|++.++++.+..+. +...+..++.+|.+.|++++|.++++++....|++ ..+..+.++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHhc
Confidence 4678899999999999875444 67778889999999999999999999999988884 455555554
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.74 E-value=0.00011 Score=54.80 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCC
Q 003397 736 CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKAR-KYKEAMDFLSKIKERDD 803 (823)
Q Consensus 736 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 803 (823)
+..+|..+...+...|++++|+..|+++++.... +...|..++.+|.+.| ++++|++.++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567777888888888888888888888875433 5777888888888888 68888888888887776
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.73 E-value=0.0021 Score=63.79 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=68.5
Q ss_pred CHhHHHHHHHHHHHc---CCCCCh--hHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHc
Q 003397 682 KCWKAEEILKGILKS---GGTPDL--VSYNTVIKGFCRQ-GLMQEAMRMLYEMTNR----GIRPC--IFTYNTFVSGYAG 749 (823)
Q Consensus 682 ~~~~A~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~ 749 (823)
++++|...+++..+. ...++. ..+..+...|... |++++|++.|++..+. | .+. ..++..++..+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 555555555554421 111111 2344555566666 7777777777776652 2 111 2345566667777
Q ss_pred CCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003397 750 QGMFTEIDEVIKHMFQHNCK-----PNEL-TYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 750 ~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
.|++++|+++|++....-.. .+.. .+...+-++...||...|.+.+++....+|.+...
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 77777777777777653222 1121 23334445666777777777777777777766544
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00071 Score=53.43 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHCCCCCCHHH
Q 003397 213 AYTSILHAYSKAGKYEKAISLFEKVKEMGL-SPTLVTYNVMLDVYGKMGRS-------WDRILGLLDEMRSRGLEFDEFT 284 (823)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~ 284 (823)
+-...|..+...+++..--.+|+.+++.|+ .|++.+|+.++.+.++..-+ .-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667777999999999999999998 88999999999888876532 1245667777777777888888
Q ss_pred HHHHHHHHHc
Q 003397 285 CSTVISACGR 294 (823)
Q Consensus 285 ~~~ll~~~~~ 294 (823)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8877776543
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0024 Score=68.42 Aligned_cols=69 Identities=16% Similarity=0.048 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 736 CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 736 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
+...|..+.-.+...|++++|...++++++.+ |+...|..++..|...|+.++|.+.++++..++|.++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34455555555555677777777777776643 4566666777777777777777777777777776655
No 165
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.72 E-value=6.8e-05 Score=46.46 Aligned_cols=32 Identities=25% Similarity=0.666 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP 735 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 735 (823)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.013 Score=50.94 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHH
Q 003397 664 QPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC---IFTY 740 (823)
Q Consensus 664 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 740 (823)
-|++..-..|..+..+.|+..+|...|++...--+.-|....-.+.++....++..+|...++++.+.+ |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 466777778888888889999999988888765555677777778888888888888888888888742 22 2344
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003397 741 NTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSK 797 (823)
Q Consensus 741 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 797 (823)
..+.+.|...|.+++|+..|+.++.+- |+...-......+.++|+.++|..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 556778888888888888888888753 4444434455677888877777654433
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.69 E-value=0.0012 Score=65.29 Aligned_cols=129 Identities=10% Similarity=0.049 Sum_probs=62.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 003397 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR-AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGF 712 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 712 (823)
+|..++....+.+..+.|..+|.++.+.+ ..+..+|.....+-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555566666666655332 1233344433333223 34444466666655544 333445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 713 CRQGLMQEAMRMLYEMTNRGIRPCI---FTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.+.|+.+.|..+|++.+.. +.++. ..|..++.--.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666555543 22111 2455555555555555555555555554
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.68 E-value=0.0014 Score=55.44 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 003397 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGT--PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIR--PCIFTYNTFV 744 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~ 744 (823)
++..++..+.+.|++++|.+.|+++.+.... .....+..+..++.+.|++++|...|+++....-. .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777777654211 01234555667777777777777777777653111 1134566666
Q ss_pred HHHHcCCChhHHHHHHHHHHhCC
Q 003397 745 SGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
.++.+.|++++|.+.++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 67777777777777777777643
No 169
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.64 E-value=0.085 Score=52.78 Aligned_cols=133 Identities=9% Similarity=0.066 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 003397 668 VTYNNLMDMYARAGKCWKAEEILKGILKSG-GTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTY-NTFVS 745 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~ 745 (823)
.+|..+++...+..-++.|..+|-+..+.+ ..+++..+++++.-++ .|+..-|.++|+--..+ -||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 444555555555555666666666665555 3445555555555443 44555555555543332 2333222 33344
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 746 GYAGQGMFTEIDEVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 746 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
-+...++-+.|..+|+..++. +.-+ ..+|..+++-=..-|+++.+..+-+++.+..|+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 445555555566666654432 1212 345566666555666666666666666666555
No 170
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.62 E-value=0.091 Score=52.58 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhH-HHHH
Q 003397 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESG-MQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVS-YNTV 708 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 708 (823)
-..+|...++...+..-++.|..+|-++.+.+ +.+++.++++++..++ .|+...|..+|+--... -||... -+-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34567778888788888999999999999988 6678888899888665 78899999999976654 344433 3455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 003397 709 IKGFCRQGLMQEAMRMLYEMTNRGIRPC--IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCK 784 (823)
Q Consensus 709 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 784 (823)
+.-+..-++-..|..+|+..++. +.-+ ..+|..++.--..-|++..+..+-+++.+. -|...+.......|.-
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 66777889999999999977764 3333 567899998888999999999999999873 4555444444444443
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.0015 Score=59.17 Aligned_cols=103 Identities=13% Similarity=0.030 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP--CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVD 780 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 780 (823)
..|..++..+...|++++|+..|++.+.....+ ...++..+..++...|++++|++.++++++.... ....+..++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 344555555555666666666666665431111 1234555666666666666666666666553111 2333444444
Q ss_pred HHH-------hcCChH-------HHHHHHHHHhhcCCCCC
Q 003397 781 GYC-------KARKYK-------EAMDFLSKIKERDDSFN 806 (823)
Q Consensus 781 ~~~-------~~g~~~-------~A~~~~~~~~~~~~~~~ 806 (823)
.|. +.|+++ +|..+++++....|+..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 444 556555 55556666666776654
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0011 Score=62.49 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=76.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCC
Q 003397 639 LSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPD-LVSYNTVIKGFCRQGL 717 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 717 (823)
.+-..+.++|++|+..|.++++..+. |.+-|..=..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 44456778888888888888886533 6666777778888888888888888887764 333 3678888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003397 718 MQEAMRMLYEMTNRGIRPCIFTYNTFVS 745 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 745 (823)
+++|++.|++.++ +.|+..+|..=+.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8888888888887 7788777654443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.0042 Score=61.69 Aligned_cols=135 Identities=14% Similarity=0.207 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHc-CCHhHHHHHHHHHHHc----CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----
Q 003397 669 TYNNLMDMYARA-GKCWKAEEILKGILKS----GGTPD--LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----- 736 (823)
Q Consensus 669 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----- 736 (823)
.+..+...|... |++++|++.|++..+. + .+. ..++..++..+.+.|++++|+++|++.......-+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 445556666666 8888888888887642 2 111 24456677888999999999999999887432211
Q ss_pred H-HHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHh--cCChHHHHHHHHHHhhcCCC
Q 003397 737 I-FTYNTFVSGYAGQGMFTEIDEVIKHMFQHN--CKPN--ELTYKIVVDGYCK--ARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 737 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~ 804 (823)
. ..+...+-++...||.-.|.+.+++..... +..+ ......|+.+|-. ...+++|..-++.+..+++.
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 1 123334446677899999999999987532 2222 3445666666654 34666677777777666643
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.56 E-value=0.00011 Score=44.39 Aligned_cols=30 Identities=33% Similarity=0.878 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003397 213 AYTSILHAYSKAGKYEKAISLFEKVKEMGL 242 (823)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 242 (823)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688899999999999999999999988764
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0066 Score=65.20 Aligned_cols=140 Identities=11% Similarity=0.024 Sum_probs=99.2
Q ss_pred CCCCCCHHHHHHHHHHHHc--c---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHH
Q 003397 626 HGYKPDLVIFNSMLSICAK--N---SMYDRANEMLHLILESGMQPNLVTYNNLMDMYARA--------GKCWKAEEILKG 692 (823)
Q Consensus 626 ~~~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 692 (823)
.....+...|...+.+... . ++.++|+.+|+++++..+. ....|..+..+|... ++...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3445677888888877543 2 2367899999999986533 445555554444322 123444555554
Q ss_pred HHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 003397 693 ILKSG-GTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNC 768 (823)
Q Consensus 693 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 768 (823)
..... ...+...|..+.-.....|++++|...++++++ +.|+...|..+..++...|+.++|++.++++...++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44321 233556777777777778999999999999999 457888999999999999999999999999998543
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=0.00012 Score=44.14 Aligned_cols=29 Identities=41% Similarity=0.730 Sum_probs=14.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003397 319 TYNSLLQVFGKAGVYSEALSILKEMEDNN 347 (823)
Q Consensus 319 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 347 (823)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.0022 Score=65.88 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=63.2
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003397 641 ICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQE 720 (823)
Q Consensus 641 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 720 (823)
.+...|++++|++.|+++++.... +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344567777777777777765433 55666666777777777777777777776643 2245566666777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 003397 721 AMRMLYEMTNRGIRPCIFTYNT 742 (823)
Q Consensus 721 A~~~~~~m~~~~~~p~~~~~~~ 742 (823)
|+..|++.++ +.|+......
T Consensus 89 A~~~~~~al~--l~P~~~~~~~ 108 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHH--hCCCCHHHHH
Confidence 7777777776 3455444333
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.55 E-value=0.0014 Score=67.11 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003397 422 VCTYNAVLGMLGKKGRSEEMMKILCDMKSS--GCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLI 499 (823)
Q Consensus 422 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 499 (823)
......+++.+....+++.+.+++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++.|+
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 333344444444444444444444444332 111122333344444444444444444444444444444444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 003397 500 SAYGRCGSGVDATKMFEDMMKT 521 (823)
Q Consensus 500 ~~~~~~~~~~~a~~~~~~~~~~ 521 (823)
+.+.+.|++..|.++...|..+
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHh
Confidence 4444444444444444444433
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00022 Score=55.65 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=40.9
Q ss_pred cCCHhHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHH
Q 003397 680 AGKCWKAEEILKGILKSGGT-PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 757 (823)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|+.++++ .+ ..+. ......++.+|...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666654221 1233344456666666666666666655 22 1222 233334456666666666666
Q ss_pred HHHHH
Q 003397 758 EVIKH 762 (823)
Q Consensus 758 ~~~~~ 762 (823)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.52 E-value=0.0015 Score=52.48 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 003397 672 NLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG 751 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 751 (823)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555555555655555555432 1122444555555555566666666665555531 122234555555555666
Q ss_pred ChhHHHHHHHHHHh
Q 003397 752 MFTEIDEVIKHMFQ 765 (823)
Q Consensus 752 ~~~~A~~~~~~~~~ 765 (823)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666555543
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.49 E-value=0.0026 Score=61.53 Aligned_cols=102 Identities=10% Similarity=0.001 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-C-CHHHHH
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI----FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK-P-NELTYK 776 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~ 776 (823)
..|...+..+.+.|++++|+..|+.+++. .|+. ..+..+..+|...|++++|+..|+.+++.-+. | ....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555454456678888888888888874 3443 45667788888899999999999998864222 1 245566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 777 IVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 777 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.++.+|...|+.++|.++++++.+..|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788888999999999999998888753
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.49 E-value=0.0014 Score=51.86 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003397 324 LQVFGKAGVYSEALSILKEMEDNNC-PPDSVTYNEVVGAYVRAG--------FYEEGAALIDTMSSKGLMPNAVTYTTLI 394 (823)
Q Consensus 324 i~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~li 394 (823)
|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 455555555555444421 1233444555555555555555555555
Q ss_pred HHHH
Q 003397 395 DAYG 398 (823)
Q Consensus 395 ~~~~ 398 (823)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 183
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.064 Score=53.61 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 003397 358 VVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGR 437 (823)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 437 (823)
.|.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++... . -++.-|..++..|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 3444444444444444433321 13444444555555555555444433221 0 122334444555555555
Q ss_pred HHHHHHHHHH
Q 003397 438 SEEMMKILCD 447 (823)
Q Consensus 438 ~~~a~~~~~~ 447 (823)
..+|..+...
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5554444443
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0015 Score=64.44 Aligned_cols=144 Identities=10% Similarity=0.100 Sum_probs=100.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSI-CAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
++-.++....+.+.++.|..+|.+..+.+ ..+..+|...+.. |...++.+.|.++|+..++.- ..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34456667777888999999999998543 2344555555555 334677777999999988763 34778888888988
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 678 ARAGKCWKAEEILKGILKSGGTPDL---VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
.+.|+.+.|..+|++.+.. +..+. ..|...+.--.+.|+++.+.++.+++.+. .|+...+..+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 9999999999999998865 33222 47888888888899999999999988883 45544444444433
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0099 Score=56.66 Aligned_cols=105 Identities=9% Similarity=0.034 Sum_probs=64.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC---CChhHHHHHHHHHHhCCCCCCHHHH
Q 003397 700 PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQ---GMFTEIDEVIKHMFQHNCKPNELTY 775 (823)
Q Consensus 700 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~ 775 (823)
-|...|..|..+|...|+++.|...|.+..+ +.| |...+..+..++..+ .+..++..++++++..... |....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3566677777777777777777777777666 222 344455555544332 2345666777777764322 56666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 776 KIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
..|...+...|++.+|...++.|++..|.+++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66667777777777777777777776666543
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.059 Score=47.03 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CChhHHHH
Q 003397 629 KPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGT-PDLVSYNT 707 (823)
Q Consensus 629 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 707 (823)
.|++..--.|..+....|++.+|...|++...--.-.|......+.++....+++..|...++++.+.... .++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45666666788899999999999999999886434457788888899999999999999999999875311 12234456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003397 708 VIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
+...|...|+.++|...|+...+. -|+...-......+.+.|+.+++..-+..+.+. +.-+..+|.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~-~~r~~~H~r----------- 231 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDT-AKRSRPHYR----------- 231 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHhcchhHH-----------
Confidence 778999999999999999999984 566555444555677889888888776666542 222444554
Q ss_pred hHHHHHHHHHH
Q 003397 788 YKEAMDFLSKI 798 (823)
Q Consensus 788 ~~~A~~~~~~~ 798 (823)
+++.+|++.+
T Consensus 232 -kh~reW~~~A 241 (251)
T COG4700 232 -KHHREWIKTA 241 (251)
T ss_pred -HHHHHHHHHH
Confidence 5566666655
No 187
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.0026 Score=62.18 Aligned_cols=131 Identities=12% Similarity=-0.005 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHH----HcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 003397 669 TYNNLMDMYARAGKCWKAEEILKGIL----KSGGT-PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GI-RPCIF 738 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~ 738 (823)
.|..|.+.|.-.|+++.|+..-+.-+ +.|-+ ....++..+..++.-.|+++.|.+.|+....- |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444455555566666655443322 11111 01134455566666666666666666543321 11 11223
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQ----HN-CKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
....|.+.|.-...+++|+.++.+-+. .+ ..-....|.+|..+|-.-|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344555555555566666666554432 10 01134455666666666666666666655544
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.46 E-value=0.0082 Score=54.62 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHH
Q 003397 632 LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPN--LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVI 709 (823)
Q Consensus 632 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 709 (823)
...+..+...+...|++++|...|+++++....+. ...+..+...|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34677777888899999999999999987543332 3678888999999999999999999998753 22566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 710 KGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 710 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.++...|+...+..-++.... .+++|.++++++..
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~ 148 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 888888887666655444332 25667777777765
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0067 Score=50.27 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=40.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc
Q 003397 710 KGFCRQGLMQEAMRMLYEMTNRGIRPC--IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP--NELTYKIVVDGYCKA 785 (823)
Q Consensus 710 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~ 785 (823)
.++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++.......+ +......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555444332 2234444555555555555555555555421110 112222333444555
Q ss_pred CChHHHHHHHHHH
Q 003397 786 RKYKEAMDFLSKI 798 (823)
Q Consensus 786 g~~~~A~~~~~~~ 798 (823)
|+.++|.+++-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555554433
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.42 E-value=0.023 Score=48.98 Aligned_cols=91 Identities=7% Similarity=-0.086 Sum_probs=55.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003397 638 MLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL 717 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 717 (823)
+...+...|++++|..+|+.+....+. +..-|..|.-+|-..|++.+|+..|........ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 333445566666666666666654432 445556666666666666666666666665542 255555566666666666
Q ss_pred HHHHHHHHHHHHH
Q 003397 718 MQEAMRMLYEMTN 730 (823)
Q Consensus 718 ~~~A~~~~~~m~~ 730 (823)
.+.|.+.|+..++
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
No 191
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.41 E-value=0.18 Score=50.82 Aligned_cols=453 Identities=15% Similarity=0.131 Sum_probs=212.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HH
Q 003397 222 SKAGKYEKAISLFEKVKEMGLSPT------LVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISA--CG 293 (823)
Q Consensus 222 ~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~ 293 (823)
-+.+++.+|.++|.++-+.- ..+ .+..+.+|++|...+ .+.....+.+..+.. + ...|..+..+ +.
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n--ld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN--LDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh--HHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 35667777777777765531 112 233456777777654 466666666665542 2 2234444433 34
Q ss_pred ccCCHHHHHHHHHHHHhC--CCCC------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhHH
Q 003397 294 REGLLNEAKEFFAGLKLE--GYVP------------GTVTYNSLLQVFGKAGVYSEALSILKEMEDN----NCPPDSVTY 355 (823)
Q Consensus 294 ~~g~~~~A~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~ 355 (823)
+.+.+..|.+.+..-.+. +..+ +...=+..+.+++..|++.+++.++++|... .+.-++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778888888877765544 2221 1112244566778888888888888877643 333677778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003397 356 NEVVGAYVRAGFYEEGAALIDTMS---SKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGML 432 (823)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~~~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 432 (823)
+.++-.+.+. .|-+++ +..+-|+ -|.. |-.|.+. ...++...-..+.|.......++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd--yYem-ilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD--YYEM-ILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH--HHHH-HHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 7766555443 122221 1223322 2332 2233221 01111111111223333333333322
Q ss_pred HcC--CCHHHHHHHHHHhhhCCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhc
Q 003397 433 GKK--GRSEEMMKILCDMKSSGCSPNRI-TWNTMLTMCGNKGLDKYVNQVFREMKSCGFE----PDRDTFNTLISAYGRC 505 (823)
Q Consensus 433 ~~~--g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~ 505 (823)
.-. .+..--+++++.....-+.|+.. ....++..+.+ +.+++..+-+.+....+. --..++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 12222333333333333445432 23333444443 444455444444332211 1134566777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHH----HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH---HH
Q 003397 506 GSGVDATKMFEDMMKTGFTPCVTTYNAF-------LNALA----RRGDWKAAESVILDMQNKGFKPSET-SFSLM---LN 570 (823)
Q Consensus 506 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~l---l~ 570 (823)
++...|.+.+.-+.-. .|+...-..+ -+..+ ..-+...-+.++.+....++ |.. ....+ ..
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAK 387 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHH
Confidence 8888887777666543 3333221111 11111 01112222333333333222 111 11111 11
Q ss_pred HHHccCC-hhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cC
Q 003397 571 CYAKGGN-LKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK---NS 646 (823)
Q Consensus 571 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~ 646 (823)
-+.+.|. -+++..+.+.++.-... ++..-..++..+=.+|.+ ..
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~y--------------------------------D~ec~n~v~~fvKq~Y~qaLs~~ 435 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNY--------------------------------DIECENIVFLFVKQAYKQALSMH 435 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccc--------------------------------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 2233333 33444444443221110 000001122222222222 22
Q ss_pred ChHHHHHHHHHHHHcCCCC----CHHHHHHHHHH--HHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003397 647 MYDRANEMLHLILESGMQP----NLVTYNNLMDM--YARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQE 720 (823)
Q Consensus 647 ~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 720 (823)
.+.+-..+-+-+.+.|+.| +...-|.|.++ ....|++.++.-.-.-+.+ +.|++.+|..++-+.....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 3334444444444556554 23344555554 3467888887665554544 57788888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 003397 721 AMRMLYEMTNRGIRPCIFTYNT 742 (823)
Q Consensus 721 A~~~~~~m~~~~~~p~~~~~~~ 742 (823)
|..++.. ++|+..+++.
T Consensus 514 A~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 514 AWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHh-----CCCchhhHHH
Confidence 8888876 4666666654
No 192
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.18 Score=50.20 Aligned_cols=87 Identities=9% Similarity=-0.026 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 003397 609 KCRALQGMERAFQELQKHG---YKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWK 685 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 685 (823)
+.|.+..|.+.|.+.+... ..++...|.....+..+.|+.++|+.--++..+.... -...|..-..++...+++++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544332 2344555666666667777788777777776653210 11122222334455667777
Q ss_pred HHHHHHHHHHc
Q 003397 686 AEEILKGILKS 696 (823)
Q Consensus 686 A~~~~~~~~~~ 696 (823)
|.+-|++..+.
T Consensus 340 AV~d~~~a~q~ 350 (486)
T KOG0550|consen 340 AVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHhh
Confidence 77777776654
No 193
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=97.39 E-value=0.00052 Score=72.28 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=4.5
Q ss_pred CCCCCCCCCCCC
Q 003397 4 TIFPNRPVPPIR 15 (823)
Q Consensus 4 ~~~~~~~~~~~~ 15 (823)
+++-||||+|.+
T Consensus 278 S~s~ppppap~p 289 (830)
T KOG1923|consen 278 SGSGPPPPAPLP 289 (830)
T ss_pred CCCCCCCCCCCC
Confidence 333333333333
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.0041 Score=60.90 Aligned_cols=284 Identities=15% Similarity=0.076 Sum_probs=147.1
Q ss_pred HHccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHH--HhC--CC-CCCHHHHHHHHHHHH
Q 003397 467 CGNKGLDKYVNQVFREMKSCGFE---PDRDTFNTLISAYGRCGSGVDATKMFEDM--MKT--GF-TPCVTTYNAFLNALA 538 (823)
Q Consensus 467 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~li~~~~ 538 (823)
+|+.|+.+....+|+..++.|-. .-...|..|.++|...+++++|+++...= +.+ |- .-....-..|...+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 66777777777777777766522 12345666677777777777777764321 110 00 001112223334444
Q ss_pred HcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhH
Q 003397 539 RRGDWKAAESVILDMQ----NKGF-KPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRAL 613 (823)
Q Consensus 539 ~~g~~~~a~~~~~~m~----~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 613 (823)
-.|.+++|+....+-. +.|- ......+..+...|...|+.-....-.+ .+-++... ...+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee----~g~f~~ev-----------~~al 171 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEE----KGAFNAEV-----------TSAL 171 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhh----cccccHHH-----------HHHH
Confidence 5566666654433221 1111 1122344455555555443221100000 00000000 0112
Q ss_pred HHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHHcCCH
Q 003397 614 QGMERAFQEL----QKHGYK-PDLVIFNSMLSICAKNSMYDRANEMLHLIL----ESGMQP-NLVTYNNLMDMYARAGKC 683 (823)
Q Consensus 614 ~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~g~~ 683 (823)
+.|.+.|.+- .+.|-. .--.+|..|.+.|.-.|+++.|+...+.-+ +.|-+. ....+..|.+++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 3333333321 111100 011256666677777888888887766432 223111 224567778888888888
Q ss_pred hHHHHHHHHHHH----cCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHcCCCh
Q 003397 684 WKAEEILKGILK----SGGT-PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN----R-GIRPCIFTYNTFVSGYAGQGMF 753 (823)
Q Consensus 684 ~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~l~~~~~~~g~~ 753 (823)
+.|.+.|+.... .|-+ ....+..+|...|.-..+++.|+.++.+-+. - ...-....+..|..++...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 888888876542 2211 1223344567777777778888887765432 1 1122345678888888888888
Q ss_pred hHHHHHHHHHHh
Q 003397 754 TEIDEVIKHMFQ 765 (823)
Q Consensus 754 ~~A~~~~~~~~~ 765 (823)
++|..+.+..++
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 888888776654
No 195
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.35 E-value=0.004 Score=56.43 Aligned_cols=94 Identities=13% Similarity=0.032 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 003397 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTP--DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFV 744 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 744 (823)
..|..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++..+. .|+ ..++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 344555556666677777777777766542221 1235666667777777777777777776653 232 33444445
Q ss_pred HHHH-------cCCChhHHHHHHHHH
Q 003397 745 SGYA-------GQGMFTEIDEVIKHM 763 (823)
Q Consensus 745 ~~~~-------~~g~~~~A~~~~~~~ 763 (823)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 4444 667766555555444
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.0011 Score=50.06 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 744 VSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 744 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
...|.+.+++++|+++++.+++.++. +...|...+.+|.+.|++++|.+.++++.+..|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 35678888899999999999885443 677788888899999999999999999998888643
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0048 Score=55.63 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 003397 264 DRILGLLDEMRSRGLEFDEFTCSTVISACGREG 296 (823)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 296 (823)
+.+++++++|...|+-||..++..|++.+++.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 566777777777777777777777777765544
No 198
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0044 Score=55.83 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003397 369 EEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAG 401 (823)
Q Consensus 369 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 401 (823)
+-|++++++|...|+.||..++..+++.+++.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 345555555555555555555555555554433
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.28 E-value=0.052 Score=52.21 Aligned_cols=174 Identities=12% Similarity=0.045 Sum_probs=90.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcc-c---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 003397 289 ISACGREGLLNEAKEFFAGLKLEGYVPGTV-T---YNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVR 364 (823)
Q Consensus 289 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (823)
...+...|++++|.+.|+.+... .|+.. . .-.++.++.+.+++++|...+++..+........-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 33455678888888888888776 33322 1 234566777888888888888888765322222333333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003397 365 --AG---------------F---YEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCT 424 (823)
Q Consensus 365 --~g---------------~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 424 (823)
.+ + ..+|++.|+++++ -|=...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 1223333333333 222222334444433333221 0011
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhC--CCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 003397 425 YNAVLGMLGKKGRSEEMMKILCDMKSS--GCSPNRITWNTMLTMCGNKGLDKYVNQVFREM 483 (823)
Q Consensus 425 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 483 (823)
--.+.+.|.+.|.+..|+.-++.+++. +..........++.+|...|..++|.++...+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 113455666777777777777776654 22223445555666666666666666655444
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.06 Score=51.78 Aligned_cols=177 Identities=10% Similarity=0.071 Sum_probs=103.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 003397 604 ILVNFKCRALQGMERAFQELQKHGYKPDLVIF---NSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR- 679 (823)
Q Consensus 604 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 679 (823)
+......|++++|.+.|+.+....+.. .... -.++.+|.+.+++++|...+++.++..+.....-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344455677777777788777764332 2222 34556677888888888888888876443333333222332221
Q ss_pred -cC---------------C---HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003397 680 -AG---------------K---CWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTY 740 (823)
Q Consensus 680 -~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 740 (823)
.+ + ..+|+..|+++++. -|+ ..-..+|...+..+.+. + ...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~-l---a~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR-L---AKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH-H---HHHH
Confidence 11 1 22344445544443 222 22234444444444321 0 0111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 741 NTFVSGYAGQGMFTEIDEVIKHMFQHNC--KPNELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 741 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
..+.+-|.+.|.+..|+.-++.+++.=. .........++.+|.+.|..++|.++...+..
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 2456678889999999999999997422 11355677888999999999999998876643
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.06 Score=54.18 Aligned_cols=166 Identities=13% Similarity=0.075 Sum_probs=91.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003397 637 SMLSICAKNSMYDRANEMLHLILESG---MQPNLVTYNNLMDMYAR---AGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 637 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
.++-.|....+++..+++++.+...- +.-...+-.....++.+ .|+.++|++++..+......++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445667777777777777766531 11111222233344445 6777777777777555445566667766665
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh----HHHHHH----HHHHhCCCC---C
Q 003397 711 GFCR---------QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFT----EIDEVI----KHMFQHNCK---P 770 (823)
Q Consensus 711 ~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~~~---p 770 (823)
.|-. ....++|+..|.+.-+ +.||.+.=.+++..+...|... +..++. ..+.+.|.. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5532 1136677777777665 3455443333333333333221 222222 111223322 2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 771 NELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 771 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+-..+.+++.++.-.|+.++|.+++++|....|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 4455567788888888888888888888876654
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.21 Score=46.43 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=100.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHH-----
Q 003397 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTV----- 708 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----- 708 (823)
+.+.++..+.-.|.+.-...++++.++...+.+......|+++-.+.||.+.|...|++..+.....|....+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455666666777888888899999998776668888889999999999999999999987755444444444433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 003397 709 IKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK 769 (823)
Q Consensus 709 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 769 (823)
...|.-++++.+|...+.++...+ .-|....|.-.-++.-.|+..+|++.++.|++..+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 345666788999999999888753 234555565555666678999999999999975443
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.024 Score=54.10 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHH
Q 003397 648 YDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG---LMQEAMRM 724 (823)
Q Consensus 648 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 724 (823)
.++...-++.-+..++. |...|..|...|...|+++.|...|.+..+.. ..|...+..+..++..+. +..++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 33444444444455543 88889999999999999999999999888763 346677777777665543 36788888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 003397 725 LYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 725 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
|++++.. .|+ ......|...+...|++.+|...|+.|++..
T Consensus 216 l~~al~~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALAL--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9998873 454 4456667778888999999999999998753
No 204
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.12 E-value=0.38 Score=48.61 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=78.3
Q ss_pred HHHcCC-HhHHHHHHHHHHHcCCCCChhHHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHH
Q 003397 677 YARAGK-CWKAEEILKGILKSGGTPDLVSYNTVI----KGFCR---QGLMQEAMRMLYEMTNRGIRPC----IFTYNTFV 744 (823)
Q Consensus 677 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~ 744 (823)
+-+.|. -++|+.+++.+.+.. .-|...-|.+. ..|.. ...+.+-+++-+-+.+.|+.|- ...-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334555 677888888887642 22443333322 22221 1223333443334445677663 34456665
Q ss_pred HH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 745 SG--YAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 745 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
+| +...|++.++.-+-.-+.+ +.|+..+|+.++-++....+++||.+++++++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 54 4578999998887777766 778899999999999999999999999988875
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.10 E-value=0.036 Score=47.99 Aligned_cols=92 Identities=13% Similarity=-0.013 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003397 708 VIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
...-+...|++++|..+|+-+.-.+. -|..-|..|..++-..+++++|+..|..+...+.. |...+...+.+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 34445678888888888887776432 24555677777777888888888888887765433 55556677888888888
Q ss_pred hHHHHHHHHHHhhc
Q 003397 788 YKEAMDFLSKIKER 801 (823)
Q Consensus 788 ~~~A~~~~~~~~~~ 801 (823)
.++|+..++.+.+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888888874
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.08 E-value=0.026 Score=58.81 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 003397 386 NAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKS 450 (823)
Q Consensus 386 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 450 (823)
+..+...+...+.+...+..|-++|.+|-.. ..+++.+...+++++|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3444555555555666777777777777532 3456677778888888877776654
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.06 E-value=0.044 Score=45.50 Aligned_cols=90 Identities=16% Similarity=0.040 Sum_probs=48.0
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 003397 673 LMDMYARAGKCWKAEEILKGILKSGGTPD--LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----IFTYNTFVSG 746 (823)
Q Consensus 673 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~ 746 (823)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 34455556666666666666666554432 133444555666666666666666666553 122 1122223345
Q ss_pred HHcCCChhHHHHHHHHHH
Q 003397 747 YAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 747 ~~~~g~~~~A~~~~~~~~ 764 (823)
+...|+.++|++.+-..+
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556666666666655544
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.99 E-value=0.14 Score=47.84 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=90.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 003397 603 LILVNFKCRALQGMERAFQELQKHGYKP--DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYA-- 678 (823)
Q Consensus 603 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 678 (823)
.+......|++.+|...|+.+....+.. ...+.-.++.++.+.|++++|...+++.++..+.....-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3445556677777777777777653221 123455666777778888888888888776543322222222222211
Q ss_pred Hc-----------CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 679 RA-----------GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 679 ~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
.. +...+|...|+++ +.-|=.+....+|...+..+.+. + ...-..++.-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l---------------i~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL---------------IKRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH---------------HHH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHH---------------HHHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHHH
Confidence 11 1122333333333 33333344445555554444331 0 01112356678
Q ss_pred HcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 003397 748 AGQGMFTEIDEVIKHMFQHNCKP--NELTYKIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 748 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 793 (823)
.+.|.+..|+..++.+++.=+.. .......++.+|.+.|..+.|..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 89999999999999998742221 13456778888888888875543
No 209
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.99 E-value=0.0036 Score=46.55 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC-ChhHHHHHHHHHHh
Q 003397 702 LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQG-MFTEIDEVIKHMFQ 765 (823)
Q Consensus 702 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 765 (823)
...|..+...+...|++++|+..|++.++. .|+ ...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445666666666666666666666666663 333 445666666666666 56666666666655
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.5 Score=47.34 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccC
Q 003397 392 TLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKG 471 (823)
Q Consensus 392 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 471 (823)
..|.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-.++.+. + -++.-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHHCC
Confidence 33444555666666666655542 24666666667777777776666554332 1 13455666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003397 472 LDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKM 514 (823)
Q Consensus 472 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 514 (823)
+..+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 666666655541 113445566666666666554
No 211
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.94 E-value=0.0036 Score=45.82 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 711 GFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.+...|++++|.+.|+++++.. | +...+..+..++...|++++|+..++++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444421 2 233344444444444444444444444443
No 212
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.75 Score=50.32 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=112.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 003397 285 CSTVISACGREGLLNEAKEFFAGLKLEGYVPGT--VTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAY 362 (823)
Q Consensus 285 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 362 (823)
...-+..+.+...++.|..+-.. .+..++. .....-..-+.+.|++++|.+.|-+-... +.| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 34556667777888888776544 2222221 12223334455788999998888766543 122 2356677
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003397 363 VRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMM 442 (823)
Q Consensus 363 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 442 (823)
....++.+-...++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777788888888888888876 66777888899999999888777766654 2211 112345566677777777777
Q ss_pred HHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHH
Q 003397 443 KILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREM 483 (823)
Q Consensus 443 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 483 (823)
.+-..... +......+ +...+++++|.+++..+
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 76665543 22333333 34567788888777654
No 213
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.26 Score=53.70 Aligned_cols=177 Identities=16% Similarity=0.193 Sum_probs=119.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 003397 249 YNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISA----CGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLL 324 (823)
Q Consensus 249 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~----~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 324 (823)
...-|+.+++... ++.|..+.+. .+ .+..+...+... +.+.|++++|...|-+-... ..| ..+|
T Consensus 337 le~kL~iL~kK~l-y~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNL-YKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 3455666666555 6777665433 32 344444444444 45789999999877665432 122 3477
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003397 325 QVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVN 404 (823)
Q Consensus 325 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 404 (823)
.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 8888888888999999999999865 45566779999999999999888877655 3322 112345667777778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 003397 405 KALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMK 449 (823)
Q Consensus 405 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 449 (823)
+|..+-.+... +...... .+-..+++++|++.+..+.
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 88777665543 2333333 3445688999999998874
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.019 Score=57.01 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+++.|..+|.+.+++.+|++..++.++.+. .|......-+.+|...|+++.|+..++++++..|+|
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 456666667777777777777777776443 256666666677777777777777777777777776
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.83 E-value=0.046 Score=57.04 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003397 491 DRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLN 570 (823)
Q Consensus 491 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 570 (823)
+..+...+...+.+...+.-|.++|..|-. ...+++.....++|.+|..+-+...+. .+| .|....+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 344555555556667777778888877753 234567778888999988887765442 223 2333333
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC
Q 003397 571 CYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH 626 (823)
Q Consensus 571 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 626 (823)
-++...++++|.+. |.+.|+-.+|..+++++...
T Consensus 813 wLAE~DrFeEAqkA----------------------fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKA----------------------FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHHH----------------------HHHhcchHHHHHHHHHhhhh
Confidence 44455555555443 44557777777777776543
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.82 E-value=0.1 Score=48.90 Aligned_cols=57 Identities=19% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003397 290 SACGREGLLNEAKEFFAGLKLEGYV--PGTVTYNSLLQVFGKAGVYSEALSILKEMEDN 346 (823)
Q Consensus 290 ~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 346 (823)
..+...|++++|.+.|+.+...... -.....-.++.++.+.|++++|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455778888888888887765211 11224455667777888888888888877654
No 217
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.78 E-value=0.0045 Score=45.85 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=29.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 714 RQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666666531 12445555566666666666666666666665
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.055 Score=50.03 Aligned_cols=136 Identities=10% Similarity=0.042 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----H
Q 003397 670 YNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTF-----V 744 (823)
Q Consensus 670 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-----~ 744 (823)
.++++....-.|.+.-...++++.++...+.+......|.+.-.+.|+.+.|...|+...+..-..|..+.+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34666666667889999999999998776778888889999999999999999999977664334444444433 3
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 745 SGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 745 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
..+.-++++.+|...+.+....+.. |....+.-+-++.-.|+..+|.+.++.|.+..|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 4566678888898889888865433 455555555566667899999999999999998853
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.74 E-value=0.7 Score=45.77 Aligned_cols=283 Identities=16% Similarity=0.106 Sum_probs=158.7
Q ss_pred CCCHHHHHHHHHHhhhCCCCCChhHHHHHHHH--HHccCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCh
Q 003397 435 KGRSEEMMKILCDMKSSGCSPNRITWNTMLTM--CGNKGLDKYVNQVFREMKSCGFEPDRDTFN----TLISAYGRCGSG 508 (823)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~ 508 (823)
.|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... ..+-. .|.-.--+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccH
Confidence 45555555555443321 22244444444433 34467777777777777642 22222 222223466788
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHH--HHHHHHHHHccCChhHHHHHH
Q 003397 509 VDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGF-KPSETS--FSLMLNCYAKGGNLKGIRKIE 585 (823)
Q Consensus 509 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~--~~~ll~~~~~~~~~~~a~~~~ 585 (823)
+.|.++-+..-+.-.. -...+...+...+..|+|+.|+++++.-....+ .++..- -..|+.+-...
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s---------- 239 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS---------- 239 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH----------
Confidence 8888887777654221 345677888888899999999988887655322 222211 11111111000
Q ss_pred HHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 003397 586 KEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLV-IFNSMLSICAKNSMYDRANEMLHLILESGMQ 664 (823)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 664 (823)
.- ..+...|...-.+..+ +.||.. .--....++.+.|+..++-.+++.+-+..+.
T Consensus 240 ----~l------------------dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 240 ----LL------------------DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred ----Hh------------------cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 00 0011222222222222 344443 3334456778889999999999988886554
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003397 665 PNLVTYNNLMDMYARAGKCWKAEEILKGILKS-GGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNT 742 (823)
Q Consensus 665 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 742 (823)
|+. + ++..+.+.|+. ++.-+++..+. ..+| +..+...+..+-...|++..|..--+.... ..|....|..
T Consensus 296 P~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lL 367 (531)
T COG3898 296 PDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLL 367 (531)
T ss_pred hHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHH
Confidence 443 2 23334455553 33333333211 1233 445666677777788888887776666655 5788888888
Q ss_pred HHHHHHcC-CChhHHHHHHHHHHhC
Q 003397 743 FVSGYAGQ-GMFTEIDEVIKHMFQH 766 (823)
Q Consensus 743 l~~~~~~~-g~~~~A~~~~~~~~~~ 766 (823)
|.+.-... |+-.++...+-+.++.
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcC
Confidence 88776554 8888888888888764
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.68 E-value=0.038 Score=53.52 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 706 NTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 706 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
..++.+|...|++++|...|+.+++. .|+ ...+..++.++...|+.++|.++++++++
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444432 111 22233334444444555555555555544
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.68 E-value=0.0046 Score=47.35 Aligned_cols=62 Identities=19% Similarity=0.372 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQH----NCK-PN-ELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
+|+.+..+|...|++++|+..+++.++. |-. |+ ..++..++.+|...|++++|+++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566666666666666666666666531 111 11 44566777777777777777777777654
No 222
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.67 E-value=0.78 Score=45.42 Aligned_cols=283 Identities=17% Similarity=0.140 Sum_probs=168.6
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHHcCC
Q 003397 469 NKGLDKYVNQVFREMKSCGFEPDRDTFNTLISA--YGRCGSGVDATKMFEDMMKTGFTPCVTTYN----AFLNALARRGD 542 (823)
Q Consensus 469 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~ 542 (823)
..|+-..|.++-.+..+. +..|..-.-.|+.+ -.-.|+++.|.+-|+.|.. |..+-. .|.-.-.+.|+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence 356666666665554321 22333333333332 2346888888888888875 333322 22222345677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 003397 543 WKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQE 622 (823)
Q Consensus 543 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 622 (823)
.+.|..+-+..-..- +--...+...+...+..|+++.+.++.+..+...+
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v----------------------------- 219 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV----------------------------- 219 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-----------------------------
Confidence 777777777665542 12334556667777777777777666554322111
Q ss_pred HHHCCCCCCHH--HHHHHHHHH---HccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHc
Q 003397 623 LQKHGYKPDLV--IFNSMLSIC---AKNSMYDRANEMLHLILESGMQPNLVTY-NNLMDMYARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 623 ~~~~~~~~~~~--~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 696 (823)
+.++.. .-..|+.+- .-..+...|...-.+..+. .||..-- ..-..++.+.|+..++-.+++.+-+.
T Consensus 220 -----ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 220 -----IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred -----hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 111111 111122111 1133566677766666653 4554332 23356788999999999999999887
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 003397 697 GGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN-RGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELT 774 (823)
Q Consensus 697 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 774 (823)
...|++ +. +..+.+.|+ .++.-++.... ..++|| ......+..+....|++..|..-.+.... ..|....
T Consensus 293 ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~ 364 (531)
T COG3898 293 EPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESA 364 (531)
T ss_pred CCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhH
Confidence 444443 22 233455565 33333333332 125665 55677788888899999999988888876 5788889
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHhhcC
Q 003397 775 YKIVVDGYCKA-RKYKEAMDFLSKIKERD 802 (823)
Q Consensus 775 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 802 (823)
|-.|.+.-... |+-.++..++-+.....
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 99999987665 99999999999988643
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.42 E-value=1.3 Score=44.96 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003397 598 MLLRTLILVNFKCRALQGMERAFQELQKHG---YKPDLVIFNSMLSICAK---NSMYDRANEMLHLILESGMQPNLVTYN 671 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 671 (823)
.+...++..|....+++...++.+.+.... +.-...+-....-++-+ .|+.++|++++..+....-.++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667788888888888888877641 11122222234445556 889999999999866655567888888
Q ss_pred HHHHHHHH---------cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH----HHHHHHH---HH-HHHcCCC
Q 003397 672 NLMDMYAR---------AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLM----QEAMRML---YE-MTNRGIR 734 (823)
Q Consensus 672 ~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~-m~~~~~~ 734 (823)
.++..|-. ....++|+..|.+.-+. .++..+=-.++..+...|.. .+..++- .. +.++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88776642 12367788888777653 34543322233333334431 1222222 22 2233332
Q ss_pred ---CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003397 735 ---PCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 735 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
.|-.-+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23344567888999999999999999999975
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.36 E-value=0.27 Score=52.59 Aligned_cols=166 Identities=15% Similarity=0.115 Sum_probs=112.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHH------HHHHHHHHHH----HcCCHhHHHHHHHHHHHcCCCCCh
Q 003397 634 IFNSMLSICAKNSMYDRANEMLHLILES-GMQPNLV------TYNNLMDMYA----RAGKCWKAEEILKGILKSGGTPDL 702 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~ 702 (823)
.+..++....-.|+.+.+++++.+..+. ++. ... .|..++..++ ...+.+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 4455666667789999999999887763 232 222 2222232222 245688899999999875 5666
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HH
Q 003397 703 VSYNTV-IKGFCRQGLMQEAMRMLYEMTNRG--I-RPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTY-KI 777 (823)
Q Consensus 703 ~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ 777 (823)
..|... .+.+...|+.++|++.|++..+.. . ......+.-+...+...++|++|.+.+..+.+.. .....+| ..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 555443 466778899999999999876421 1 1224456777888899999999999999998742 2233333 34
Q ss_pred HHHHHHhcCCh-------HHHHHHHHHHhhcCC
Q 003397 778 VVDGYCKARKY-------KEAMDFLSKIKERDD 803 (823)
Q Consensus 778 l~~~~~~~g~~-------~~A~~~~~~~~~~~~ 803 (823)
.+-+|...|+. ++|.+++.++.....
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 44556778888 888888888875443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.32 E-value=0.011 Score=45.28 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNR--GIR---PC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.+++.+...|...|++++|+..|++.++. ... |+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666665542 111 11 33456666677777777777777766653
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.19 E-value=0.25 Score=43.45 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-----hCCCCCCHH
Q 003397 707 TVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMF-----QHNCKPNEL 773 (823)
Q Consensus 707 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~ 773 (823)
.++..+...|++++|..+++.++.. -+-|...|..++.+|...|+..+|.+.|+++. +.|+.|+..
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3444555555566666665555553 12244555555556666666666655555553 245555443
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.19 E-value=0.033 Score=56.74 Aligned_cols=98 Identities=7% Similarity=0.097 Sum_probs=71.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 003397 700 PDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI----FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTY 775 (823)
Q Consensus 700 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 775 (823)
.+...++.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|++++|++.++++++.+ .+ .|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence 3567899999999999999999999999998 56774 358999999999999999999999999852 11 12
Q ss_pred HHHHH--HHHhcCChHHHHHHHHHHhhcCC
Q 003397 776 KIVVD--GYCKARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 776 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 803 (823)
..+.. .+..-.+..+..++++.+.+-+-
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11122334466677777766553
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.11 Score=42.44 Aligned_cols=92 Identities=18% Similarity=0.046 Sum_probs=55.8
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHcCCC
Q 003397 676 MYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR-GIRPCI--FTYNTFVSGYAGQGM 752 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~~~~~l~~~~~~~g~ 752 (823)
+.+..|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|++-+++.++- |-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455667777777777777654 2335667777777777777777777777777662 222111 123333445566666
Q ss_pred hhHHHHHHHHHHhCCC
Q 003397 753 FTEIDEVIKHMFQHNC 768 (823)
Q Consensus 753 ~~~A~~~~~~~~~~~~ 768 (823)
.|.|..-|+.+.+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6777777776666553
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=1.4 Score=42.43 Aligned_cols=196 Identities=15% Similarity=0.032 Sum_probs=116.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCH
Q 003397 606 VNFKCRALQGMERAFQELQKH-GYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMD-MYARAGKC 683 (823)
Q Consensus 606 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~ 683 (823)
.+...+.+..+...+...... ........+......+...+++..+.+.+.........+ ......... .+...|++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 146 (291)
T COG0457 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDY 146 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCH
Confidence 333444444444444444321 112234455555566666677777777777777643332 122222233 67778888
Q ss_pred hHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHH
Q 003397 684 WKAEEILKGILKSGG--TPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVI 760 (823)
Q Consensus 684 ~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 760 (823)
+.|...+.+...... ......+......+...++.++|...+.+.... ... ....+..+...+...++++.|...+
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 225 (291)
T COG0457 147 EEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYY 225 (291)
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHHHHHHHH
Confidence 888888887755211 112233334444456677888888888887773 122 3566777777777778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 761 KHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 761 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
......... ....+..+...+...|+.+++...+.+.....+.
T Consensus 226 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 226 EKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888763221 2445555555666667788888888888877765
No 230
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.11 E-value=0.041 Score=41.30 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 741 NTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 741 ~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.....++...|++++|.+.+++.++
T Consensus 33 ~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 33 LQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.12 Score=48.86 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-C-CHHHHHH
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK-P-NELTYKI 777 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~ 777 (823)
.|+.-+. +.+.|++.+|...|...++. -|+ ...+..|..++...|++++|..+|..+.+.-.+ | -+..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4665444 45677899999999988874 122 223455788889999999999999888863222 2 2567778
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCHH
Q 003397 778 VVDGYCKARKYKEAMDFLSKIKERDDSFNDE 808 (823)
Q Consensus 778 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 808 (823)
|+.+..+.|+.++|...++++.+..|..+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 8889999999999999999999999986543
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.02 E-value=0.46 Score=48.87 Aligned_cols=145 Identities=17% Similarity=0.022 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHH---------HcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 003397 648 YDRANEMLHLILE-SGMQPN-LVTYNNLMDMYA---------RAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG 716 (823)
Q Consensus 648 ~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 716 (823)
.+.|..+|.+.+. +.++|+ ...|..+..++. ...+..+|.++.++..+.+ .-|..+...+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4556666666662 122332 233333333222 1234556677777777664 336666666666667777
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHH
Q 003397 717 LMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN---ELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 717 ~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~ 792 (823)
+++.|..+|++... +.|| ..+|......+...|+.++|.+.+++.++ +.|. ..+....++.|+..+ +++|.
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 78888888888777 4566 44566666666777888888888888766 3443 334444555666554 45566
Q ss_pred HHHHHH
Q 003397 793 DFLSKI 798 (823)
Q Consensus 793 ~~~~~~ 798 (823)
+++-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 665443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.98 E-value=0.068 Score=54.54 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003397 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDL----VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYN 741 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 741 (823)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|++++|+..+++.++.+ .+ .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 6678999999999999999999999999985 5553 358999999999999999999999999841 11 222
Q ss_pred HHHH--HHHcCCChhHHHHHHHHHHhCCC
Q 003397 742 TFVS--GYAGQGMFTEIDEVIKHMFQHNC 768 (823)
Q Consensus 742 ~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 768 (823)
.+.. .+....+.++..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11112233466677777776554
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.97 E-value=1.5 Score=41.38 Aligned_cols=185 Identities=12% Similarity=0.060 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHH
Q 003397 280 FDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYV--PGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNE 357 (823)
Q Consensus 280 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 357 (823)
|-...|+--+. -.+.|++++|.+.|+.+.....- -...+.-.++.++.+.+++++|+..+++....-.......|..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33444554443 44778999999999988866211 1122444556677788888888888888876543333345555
Q ss_pred HHHHHHHc-------CCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003397 358 VVGAYVRA-------GFYE---EGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNA 427 (823)
Q Consensus 358 li~~~~~~-------g~~~---~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 427 (823)
.|.+++.. .|.. +|..-|++++.+ -|| ..=...|......+... =...=..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPN-------------SRYAPDAKARIVKLNDA----LAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCC-------------CcchhhHHHHHHHHHHH----HHHHHHH
Confidence 55555531 1222 222222222222 111 11112222222221110 0000123
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCCCh---hHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003397 428 VLGMLGKKGRSEEMMKILCDMKSSGCSPNR---ITWNTMLTMCGNKGLDKYVNQVFREMKS 485 (823)
Q Consensus 428 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 485 (823)
+.+.|.+.|.+..|..-++.|++. ..-+. ..+-.+..+|...|..++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456677777777777777777765 22122 3344445566667777766665554443
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.97 E-value=0.65 Score=45.44 Aligned_cols=128 Identities=17% Similarity=0.087 Sum_probs=69.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCCChhHH--
Q 003397 637 SMLSICAKNSMYDRANEMLHLILESGMQ-----PNLVTYNNLMDMYARAGKCWKAEEILKGILKS----GGTPDLVSY-- 705 (823)
Q Consensus 637 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~-- 705 (823)
+|..++.-.+.++++++.|+.+.+..-. ....++..|...|.+..|+++|..+..+..+. +++--..-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 4555555666677777777766542111 12245666777777777777777666655432 211111112
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 706 ---NTVIKGFCRQGLMQEAMRMLYEMTN----RGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 706 ---~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
..|.-++...|.+.+|.+..++..+ +|-.+- ......+.+.|...|+.|.|..-|+.+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2233455566666666666665443 332221 1223455666677777777666666664
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.11 Score=51.75 Aligned_cols=99 Identities=9% Similarity=0.083 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDG 781 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 781 (823)
.+++.+..+|.+.+++.+|++...+.++.+ +.|...+..-..+|...|+++.|+..|+++++ +.| |..+-..|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456677778888888888888888888752 34566666677788888888888888888888 455 55555666666
Q ss_pred HHhcCChHHH-HHHHHHHhhcCCC
Q 003397 782 YCKARKYKEA-MDFLSKIKERDDS 804 (823)
Q Consensus 782 ~~~~g~~~~A-~~~~~~~~~~~~~ 804 (823)
--+..+.++. .++|..|.....+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 5555555444 6788888766554
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.84 E-value=0.17 Score=44.42 Aligned_cols=60 Identities=10% Similarity=0.257 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
++..++..+...|++++|+..++.++...+- |...|..++.+|...|+..+|.++|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566777888999999999999999985433 78899999999999999999999998875
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=95.80 E-value=0.27 Score=42.78 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=48.4
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 003397 607 NFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKA 686 (823)
Q Consensus 607 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 686 (823)
+...|++++|..+|+-+...++- +..-|..|..++-..+++++|+..|......+.. |...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34555666666666655544322 3444555555555566666666666655544332 444444555666666666666
Q ss_pred HHHHHHHHH
Q 003397 687 EEILKGILK 695 (823)
Q Consensus 687 ~~~~~~~~~ 695 (823)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666666554
No 239
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=1.2 Score=38.80 Aligned_cols=139 Identities=12% Similarity=0.078 Sum_probs=79.3
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCh
Q 003397 678 ARAGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIF---TYNTFVSGYAGQGMF 753 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~ 753 (823)
.+.+..++|+.-|.++.+.|..--+ .............|+..+|...|.++-...-.|-.. .-.--...+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4556677777777777665543211 112223344566777777777777776533233221 111123345677888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003397 754 TEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRV 817 (823)
Q Consensus 754 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 817 (823)
++.....+-+...+-.-....-..|.-+-.+.|++.+|..+++.+-. +..-++.+.++....+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 88777777665432211233445777777888888888888888775 3334444444444433
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.74 E-value=3.4 Score=43.85 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHH
Q 003397 611 RALQGMERAFQELQKHGYK--PDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLV-TYNNLMDMYARAGKCWKAE 687 (823)
Q Consensus 611 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 687 (823)
|+.+-|..++....+-..+ |....+.+.+ .-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+.
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 5555555555544433222 2222322222 234689999999999988764 3332 2223345566788888877
Q ss_pred ---HHHHHHHHcCCCCChhHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 003397 688 ---EILKGILKSGGTPDLVSYNTVIKG-----FCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG 751 (823)
Q Consensus 688 ---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 751 (823)
.++...... .-+....+.+.-- +.-.++.+.|..++.++.+. ++++...|..+++.+...+
T Consensus 421 ~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 421 YKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333333321 1222222222222 23357889999999999884 4556667777777666554
No 241
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.74 E-value=3.4 Score=43.84 Aligned_cols=172 Identities=11% Similarity=0.040 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003397 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
+...|..-++--...|+.+.+.-+|+...-.- ..-...|-..+.-....|+.+-|..++....+.-.+....+ ..+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i-~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII-HLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH-HHHHH
Confidence 34577777777778888888888888776410 01123333334434445888888877776665433322222 12222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChhHHH---HHHHHHHhCCCCCC--HHHHHHHHHH-H
Q 003397 711 G-FCRQGLMQEAMRMLYEMTNRGIRPCIFT-YNTFVSGYAGQGMFTEID---EVIKHMFQHNCKPN--ELTYKIVVDG-Y 782 (823)
Q Consensus 711 ~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~--~~~~~~l~~~-~ 782 (823)
. .-..|+++.|..+++.+.+. + |+..- -..-+....+.|+.+.+. +++.........+. ...+.-.++. +
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 2 33467899999999888875 3 55332 233345566778877777 44444433111111 2222222222 3
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCC
Q 003397 783 CKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 783 ~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.-.++.+.|..++.++.+..|.+-
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccH
Confidence 345788888888888888888763
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.47 E-value=2.3 Score=40.08 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=46.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 743 FVSGYAGQGMFTEIDEVIKHMFQHNCKPN---ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+.+-|.+.|.+..|..-++.|++. +.-. ...+..|..+|.+.|-.++|.+.-+-+....|+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 456678888888888888888875 3222 3445667788888999998888887777666664
No 243
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.37 E-value=0.26 Score=43.74 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=65.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003397 711 GFCRQGLMQEAMRMLYEMTNRGIRPC-----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA 785 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 785 (823)
-+.+.|++++|..-|.+.++.. ++. ...|..-..++.+.+.++.|++-..+.++.++. .......-+.+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3556788888888888887742 221 234555566777888888888888888775433 333444445678888
Q ss_pred CChHHHHHHHHHHhhcCCCCC
Q 003397 786 RKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 786 g~~~~A~~~~~~~~~~~~~~~ 806 (823)
.++++|++-|+++++.+|...
T Consensus 182 ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchH
Confidence 888888888888888888864
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.37 E-value=0.026 Score=37.17 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 774 TYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 774 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
+|..+...|.+.|++++|.++++++.+.+|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 456667777777777777777777777777653
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.33 E-value=0.34 Score=39.70 Aligned_cols=53 Identities=23% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 003397 642 CAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILK 695 (823)
Q Consensus 642 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 695 (823)
.+..|+++.|++.|.+.+..-++ ....||.-..++.-+|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 33444555555555444443222 344444444444444555555544444443
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.29 E-value=1.7 Score=44.92 Aligned_cols=101 Identities=8% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 003397 706 NTVIKGFCRQGLMQEAMRMLYEMTNRGIR-PCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN--ELTYKIVVDGY 782 (823)
Q Consensus 706 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~ 782 (823)
..+..++.+.|+.+||++.+++|.+..-. -+.-....|+.++...+.++++..++.+--+... |. ...|+..+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHH
Confidence 44566666778888888888877653111 1223456677777777788887777777643222 22 22344333222
Q ss_pred HhcCC---------------hHHHHHHHHHHhhcCCCCCH
Q 003397 783 CKARK---------------YKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 783 ~~~g~---------------~~~A~~~~~~~~~~~~~~~~ 807 (823)
...|+ -..|.+.++++.+.+|..++
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 22232 12366788888888877653
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.21 E-value=0.5 Score=40.12 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhhcCCCC
Q 003397 788 YKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 788 ~~~A~~~~~~~~~~~~~~ 805 (823)
..+|..-++++....|+.
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 456777777777777764
No 248
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=6 Score=43.14 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=43.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003397 358 VVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGK---VNKALRLLNKMKESGCAPNVCTYNAVLGMLGK 434 (823)
Q Consensus 358 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 434 (823)
+|.-+...+.+..|+++-.-+...-.. +...|......+.+..+ -+.+..+-+++... . -....|..+.+.-..
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHh
Confidence 455556666677777666555433222 14455555555555432 22222222222221 1 233455566666666
Q ss_pred CCCHHHHHHHHHH
Q 003397 435 KGRSEEMMKILCD 447 (823)
Q Consensus 435 ~g~~~~a~~~~~~ 447 (823)
.|+.+.|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 7777777766654
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.16 E-value=1.3 Score=38.55 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=42.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 003397 636 NSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQ 715 (823)
Q Consensus 636 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 715 (823)
..++..+...+.......+++.+...+. .+...++.++..|++.+ ..+..+.++. ..+.......+..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455555555666666666666665542 35556666666666543 2233333331 11222233345555555
Q ss_pred CCHHHHHHHHHHH
Q 003397 716 GLMQEAMRMLYEM 728 (823)
Q Consensus 716 g~~~~A~~~~~~m 728 (823)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555544
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=1.6 Score=42.02 Aligned_cols=141 Identities=11% Similarity=0.057 Sum_probs=76.7
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 003397 641 ICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQE 720 (823)
Q Consensus 641 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 720 (823)
.....|++.+|..+|+.......+ +...-..+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777765433 3455556777777777777777777766432111111222223344444444444
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcC
Q 003397 721 AMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ--HNCKPNELTYKIVVDGYCKAR 786 (823)
Q Consensus 721 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g 786 (823)
...+-++.-. .| |...-..+...+...|+.++|.+.+-.+++ .|.. |...-..|+..+..-|
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444334333 24 445555666667777777777766655553 2333 3344455555555555
No 251
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.12 E-value=0.33 Score=40.80 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 003397 387 AVTYTTLIDAYGRAGKVNKALRLLNKMKE---------------SGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSS 451 (823)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 451 (823)
..++..+|.++++.|+++....+++..-. ....|+..+..+++.+|+.+|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34455555555555555555555543311 123344555555555555555555555555544432
Q ss_pred -CCCCChhHHHHHHH
Q 003397 452 -GCSPNRITWNTMLT 465 (823)
Q Consensus 452 -~~~p~~~~~~~ll~ 465 (823)
++..+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334444444444
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=95.04 E-value=0.74 Score=47.41 Aligned_cols=123 Identities=11% Similarity=-0.036 Sum_probs=92.6
Q ss_pred CHhHHHHHHHHHHHc-CCCCC-hhHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003397 682 KCWKAEEILKGILKS-GGTPD-LVSYNTVIKGFCR---------QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ 750 (823)
Q Consensus 682 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 750 (823)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++.++.++.+ .-|......+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467788899998822 23444 3455555444332 234667888888888853 34678888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 751 GMFTEIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 751 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
|+++.|...|+++... .|| ..+|......+.-+|+.++|.+.++++.++.|.-..
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 9999999999999984 555 677888888999999999999999999999987533
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=0.45 Score=45.14 Aligned_cols=98 Identities=12% Similarity=0.038 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCC--CCCCHHHHHHHH
Q 003397 141 VTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEK--YSLDVRAYTSIL 218 (823)
Q Consensus 141 ~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li 218 (823)
....-.+...|++..|...|......-+ +....+.++.||.+.+...|+++.|...|..+.+.- ...-+..+--|.
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP--~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYP--NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444556788999999999999988644 455788899999999999999999999998876632 123457788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 003397 219 HAYSKAGKYEKAISLFEKVKEM 240 (823)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~ 240 (823)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8999999999999999999876
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.03 E-value=0.4 Score=40.28 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=26.6
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 003397 698 GTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN-RGIRPCIFTYNTFVS 745 (823)
Q Consensus 698 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~ 745 (823)
..|+..+..+++.+|+.+|++..|+++++...+ .+++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555556666666666666666666655554 344445555555544
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=3 Score=40.14 Aligned_cols=121 Identities=13% Similarity=0.136 Sum_probs=59.7
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 003397 678 ARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 757 (823)
...|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 4556666666666666544222 334444555666666666666666665543211111112222233444444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 758 EVIKHMFQHNCKP-NELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 758 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
.+-++.-. .| |...-..+...|...|+.++|.+.+=.+..++
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44444432 23 44445556666666666666666555555443
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.99 E-value=0.6 Score=49.20 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=55.4
Q ss_pred HHccCCHHHHHHHHH--HHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHH
Q 003397 292 CGREGLLNEAKEFFA--GLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYE 369 (823)
Q Consensus 292 ~~~~g~~~~A~~~~~--~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (823)
..-.|+++++.++.. ++... + ...-.+.++.-+-+.|..+.|+++.++ .. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence 334566666555553 11110 1 122345555555555555555555322 11 1123344555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 003397 370 EGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMK 449 (823)
Q Consensus 370 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 449 (823)
.|.++.++. .+...|..|.+...+.|+++.|++.|.+... |..|+-.|.-.|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 555544332 1444555555555555666655555555432 3344444555555555555544444
Q ss_pred h
Q 003397 450 S 450 (823)
Q Consensus 450 ~ 450 (823)
.
T Consensus 401 ~ 401 (443)
T PF04053_consen 401 E 401 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.99 E-value=0.057 Score=32.98 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 773 LTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 773 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
..|..++..|...|++++|++.++++.+.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356778888888888888888888888888764
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.97 E-value=0.26 Score=46.29 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=37.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 003397 233 LFEKVKEMGLSPTLVTYNVMLDVYGKMG---------------RSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGL 297 (823)
Q Consensus 233 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~---------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 297 (823)
.+..|++.|+.-|..+|+.||..+-+.. +.-..++.++++|..+|+-||..+-..|++++++.|-
T Consensus 94 ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 94 ALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3445555566666666666655554321 1124566666666666666666666666666665553
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.92 E-value=0.071 Score=35.04 Aligned_cols=40 Identities=8% Similarity=0.261 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
++..+..+|...|++++|+++++++++..+. |...|..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 4556666777777777777777777764332 455554443
No 260
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.90 E-value=3.1 Score=38.36 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=8.2
Q ss_pred cCCHHHHHHHHHHH
Q 003397 540 RGDWKAAESVILDM 553 (823)
Q Consensus 540 ~g~~~~a~~~~~~m 553 (823)
.+.+++|.+++.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 44566666666554
No 261
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.88 E-value=0.26 Score=46.32 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003397 665 PNLVTYNNLMDMYARA-----GKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFT 739 (823)
Q Consensus 665 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 739 (823)
-|..+|...+..+... +.++-.-..++.|.+.|+..|..+|+.|++.+-+... .|....
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHHH
Confidence 3556666666655432 3455555556666666666666666666655543321 111110
Q ss_pred HHHHHHHHHc-CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003397 740 YNTFVSGYAG-QGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 740 ~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
. ..+.+ -.+.+=+++++++|..+|+.||..+-..|++++.+.|-
T Consensus 129 -Q---~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 -Q---KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -H---HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 0 01111 11224477888888888888888888888888877764
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.88 E-value=0.046 Score=33.44 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 773 LTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 773 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
.+|..++.+|...|++++|++.++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45777888888888888888888888888776
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.87 E-value=1.8 Score=35.83 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=23.5
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003397 674 MDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGI 733 (823)
Q Consensus 674 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 733 (823)
++...++|+-++-.++++++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444444444444444444331 233444444444455555555555555544444443
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.85 E-value=0.42 Score=40.58 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003397 707 TVIKGFCRQGLMQEAMRMLYEMTNRGIRPC---IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC 783 (823)
Q Consensus 707 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 783 (823)
.-.....+.|++++|.+.|+.+... .+-. ...-..|+.+|.+.|++++|+..+++.++.++.-...-|.....++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3445567789999999999999875 2222 34567788999999999999999999998654322334555555544
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003397 784 KARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVR 818 (823)
Q Consensus 784 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 818 (823)
.-...+.++.-+- ..+.++.........+...++
T Consensus 94 ~~~~~~~~~~~~~-~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 94 YYEQDEGSLQSFF-RSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHHhhhHHhhhc-ccccCcHHHHHHHHHHHHHHH
Confidence 4333332222222 334444444444444444443
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.83 E-value=4.5 Score=39.89 Aligned_cols=127 Identities=14% Similarity=0.120 Sum_probs=77.5
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHccCChHHHHHHHHHHHH----cCCCCCHH----
Q 003397 602 TLILVNFKCRALQGMERAFQELQKHGYK-----PDLVIFNSMLSICAKNSMYDRANEMLHLILE----SGMQPNLV---- 668 (823)
Q Consensus 602 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~---- 668 (823)
.+...+...+.++++.+.|+...+.... ....++-.+...|.+..++++|.-+...+.+ .++. |..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr 205 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYR 205 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHH
Confidence 3455555666677777777765442211 1234677888888888888888776655443 2332 221
Q ss_pred --HHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003397 669 --TYNNLMDMYARAGKCWKAEEILKGILKS----GGTP-DLVSYNTVIKGFCRQGLMQEAMRMLYEMT 729 (823)
Q Consensus 669 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 729 (823)
+...+.-++...|++..|.+.-++..+. |-.+ .......+.+.|...|+.+.|+.-|++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1234445666778877777777776532 3111 12334567788888898888888877654
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.82 E-value=1.9 Score=35.63 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=25.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003397 463 MLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTG 522 (823)
Q Consensus 463 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 522 (823)
.+......|+.++..++++++.+.+ .+++.....+..+|.+.|+..++.+++.+.-++|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444555555555555544322 3444444455555555555555555555554444
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.78 E-value=2.2 Score=36.97 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 003397 323 LLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVR 364 (823)
Q Consensus 323 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (823)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444444444444444444331 333444444444443
No 268
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=7.9 Score=42.31 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
-+.+.-+.-+...|+..+|.++-.+.. -||-..|..-+.+++..+++++-.++-+.+. .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344455566777899999998887763 4677788888999999999998777665543 245677788899
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003397 748 AGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLS 796 (823)
Q Consensus 748 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 796 (823)
.+.|+.++|.+++-+.... ...+.+|.+.|++.+|.+..-
T Consensus 755 ~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998766421 146788999999999877543
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.72 E-value=11 Score=43.73 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 003397 215 TSILHAYSKAGKYEKAISLFEKV 237 (823)
Q Consensus 215 ~~li~~~~~~g~~~~A~~~~~~m 237 (823)
-.-++-+++.+++.+|.++..+-
T Consensus 681 La~vr~~l~~~~y~~AF~~~Rkh 703 (1265)
T KOG1920|consen 681 LAKVRTLLDRLRYKEAFEVMRKH 703 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677778888877665543
No 270
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.69 E-value=0.12 Score=49.73 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=53.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 003397 711 GFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYK 789 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 789 (823)
-|.++|++++|+..|...+. +.| |.+++..-..+|.+...+..|+.-...++..+- .=...|..-+.+=...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 35566666666666665554 334 555665556666666666555555554443210 01222333333333445666
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003397 790 EAMDFLSKIKERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 790 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 819 (823)
||.+-++.++++.|+. ...+...++|++
T Consensus 183 EAKkD~E~vL~LEP~~--~ELkK~~a~i~S 210 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN--IELKKSLARINS 210 (536)
T ss_pred HHHHhHHHHHhhCccc--HHHHHHHHHhcc
Confidence 6666666666666663 233344444443
No 271
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.68 E-value=5.1 Score=39.79 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHHHHhC
Q 003397 264 DRILGLLDEMRSRGLEFDEFTCSTVISACGR--EGL----LNEAKEFFAGLKLE 311 (823)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~g~----~~~A~~~~~~~~~~ 311 (823)
+++..+++.|.+.|+.-+..+|.+..-.... ..+ ...|..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3445555556666555555554443222221 111 23455666666655
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=2 Score=41.79 Aligned_cols=152 Identities=12% Similarity=0.038 Sum_probs=92.6
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHHcCCHh
Q 003397 609 KCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYN----NLMDMYARAGKCW 684 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 684 (823)
..|...+|...++++.+.- +.|..++...-.+|..+|+.+.-...+++++-. ..+|...|. .+..++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4456666666677776652 346667777777777788877777777777653 223433332 2233344778888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHcCCChhHHHHHH
Q 003397 685 KAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP----CIFTYNTFVSGYAGQGMFTEIDEVI 760 (823)
Q Consensus 685 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 760 (823)
+|.+.-++..+.+ +.|..+-.++...+...|++.++.++..+-.+. .+- -...|....-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8888888777653 335566667777777788888888776553321 110 0122333333455567788888877
Q ss_pred HHHH
Q 003397 761 KHMF 764 (823)
Q Consensus 761 ~~~~ 764 (823)
++=+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6543
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.50 E-value=5.5 Score=39.45 Aligned_cols=101 Identities=13% Similarity=-0.019 Sum_probs=54.9
Q ss_pred HHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003397 284 TCSTVISACGREGLLNE---AKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVG 360 (823)
Q Consensus 284 ~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (823)
++..++.+|...+..+. |..+++.+.... .-...++-.-+..+.+.++.+++.+++.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 56667777777666544 455555554442 2224455555666666788888888888887652 112344444444
Q ss_pred HHHH--cCCHHHHHHHHHHHHhCCCCCC
Q 003397 361 AYVR--AGFYEEGAALIDTMSSKGLMPN 386 (823)
Q Consensus 361 ~~~~--~g~~~~a~~~~~~~~~~~~~p~ 386 (823)
.+-. ......+...++.+....+.+.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 4422 2233455555555554434333
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.48 E-value=7 Score=40.50 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTP---DLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
...+|..+...+.+.|+++.|...+.++...+... .......-+..+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456666666777777777777777766532111 222333344555666777777777766665
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.38 E-value=2.2 Score=45.77 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=81.8
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHhH
Q 003397 610 CRALQGMERAFQELQKHGYKPDLVIFNSML-SICAKNSMYDRANEMLHLILESG---MQPNLVTYNNLMDMYARAGKCWK 685 (823)
Q Consensus 610 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 685 (823)
....+.|.++++.+.+. -|+...|...- ..+...|+.++|++.|+.+.... .+.....+--++..+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45678889999988886 56766665444 45567899999999999766421 12233455667778888999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCCH-------HHHHHHHHHHHH
Q 003397 686 AEEILKGILKSGGTPDLVSYNTVI-KGFCRQGLM-------QEAMRMLYEMTN 730 (823)
Q Consensus 686 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~ 730 (823)
|.+.|.++.+.. .-+...|..+. .++...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998753 22334444433 344556777 888888887654
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=3.8 Score=36.82 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=73.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003397 708 VIKGFCRQGLMQEAMRMLYEMTNRGIRPC--IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA 785 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 785 (823)
+...+...|++++|...++..+..-..-+ ..+-..|.+.....|.+|+|...++...+.+. .......-+++|...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 34667888999999999888775311111 12223456778889999999999888876443 233455678899999
Q ss_pred CChHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003397 786 RKYKEAMDFLSKIKERDDSFNDESVKRLTFRV 817 (823)
Q Consensus 786 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 817 (823)
|+.++|+.-|+++++.+++. ...+.+..+|
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~--~~~~~lqmKL 202 (207)
T COG2976 173 GDKQEARAAYEKALESDASP--AAREILQMKL 202 (207)
T ss_pred CchHHHHHHHHHHHHccCCh--HHHHHHHhHH
Confidence 99999999999999887443 3334444443
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=1.2 Score=43.25 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=111.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHH----HHHHHHHHhcCCHH
Q 003397 644 KNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSY----NTVIKGFCRQGLMQ 719 (823)
Q Consensus 644 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~ 719 (823)
-.|+..+|...++++++.- +.|...+...-++|.-.|+...-...++++.-. ..++...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4688888989999998864 348888888888999999999999999988754 34454333 23345566889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003397 720 EAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ---HNCKPNELTYKIVVDGYCKARKYKEAMDFLS 796 (823)
Q Consensus 720 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 796 (823)
+|.+.-++..+-+ +-|.-.-.++...+...|+..++.++..+-.. .+...-...|-+.+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998887732 23556667888899999999999998766542 1111113345666667888899999999996
Q ss_pred HH
Q 003397 797 KI 798 (823)
Q Consensus 797 ~~ 798 (823)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 43
No 278
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.14 E-value=1.4 Score=46.54 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHH
Q 003397 140 LVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILH 219 (823)
Q Consensus 140 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 219 (823)
-..+++-|.+.|..+.|+++-. |+. .-.+...+.|+++.|.++..... +...|..|..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~-------------D~~---~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~ 355 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT-------------DPD---HRFELALQLGNLDIALEIAKELD------DPEKWKQLGD 355 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS--------------HH---HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC-------------ChH---HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHH
Confidence 4556666666666666665432 221 22344556677777766665543 5567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003397 220 AYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLN 299 (823)
Q Consensus 220 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 299 (823)
...++|+++-|++.|.+..+ |..|+-.|.-.|+ .+...++.+.....| -++....++.-.|+.+
T Consensus 356 ~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~-~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 356 EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGD-REKLSKLAKIAEERG------DINIAFQAALLLGDVE 419 (443)
T ss_dssp HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT--HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HH
T ss_pred HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCC-HHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHH
Confidence 77777777777777776543 3444444555554 355555554444443 1333344444455555
Q ss_pred HHHHHHH
Q 003397 300 EAKEFFA 306 (823)
Q Consensus 300 ~A~~~~~ 306 (823)
+..+++.
T Consensus 420 ~cv~lL~ 426 (443)
T PF04053_consen 420 ECVDLLI 426 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.01 E-value=2 Score=44.41 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=94.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 003397 644 KNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMR 723 (823)
Q Consensus 644 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 723 (823)
+..+.+.-++.-+++++. .||-..... +-+--.+....+|.+++++..+.|-. .+..- ......|.
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYI-LLAEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~------ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYI-LLAEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGH------ 245 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHh-hcccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccc------
Confidence 445556666666666653 333322211 11222455688899999888764311 10000 00011111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 003397 724 MLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK-PNELTYKIVVDGYCKARKYKEAMDFLSKIKER- 801 (823)
Q Consensus 724 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 801 (823)
.++........+-..+-..|..++.+.|+.++|++.+++|.+.... .+..+...|+.+|...+++.++..++.+--+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1222222222333444466888889999999999999999864322 24567889999999999999999999987543
Q ss_pred CCCCCHHHHHHHHHHHH
Q 003397 802 DDSFNDESVKRLTFRVR 818 (823)
Q Consensus 802 ~~~~~~~~~~~l~~~~~ 818 (823)
.|+-....|....-+.|
T Consensus 326 lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 326 LPKSATICYTAALLKAR 342 (539)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 34555666666554433
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.84 E-value=7.6 Score=38.57 Aligned_cols=130 Identities=11% Similarity=0.227 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC-
Q 003397 333 YSEALSILKEMEDNNCPPDSVTYNEVVGAYVR--AG----FYEEGAALIDTMSSKGL---MPNAVTYTTLIDAYGRAGK- 402 (823)
Q Consensus 333 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~- 402 (823)
+++...+++.|.+.|+.-+..+|-+..-.... .. ....+..+|+.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556666677777766665555432222111 11 23456677777776532 2344555555433 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCC--HHHHHHHHHHhhhCCCCCChhHHHHHH
Q 003397 403 ---VNKALRLLNKMKESGCAPNV--CTYNAVLGMLGKKGR--SEEMMKILCDMKSSGCSPNRITWNTML 464 (823)
Q Consensus 403 ---~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~ll 464 (823)
.+.++.+|+.+...|+..+- .....++........ ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 35556666666665554332 222222222211111 335666666666666666655555443
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.78 E-value=7.7 Score=38.43 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=88.9
Q ss_pred HHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 003397 634 IFNSMLSICAKNSMY---DRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK 710 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 710 (823)
++..++.+|...+.. ++|..+++.+.+.... ....+-.-+..+.+.++.+++.+++.+|+.. +.-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 556677777776654 4566666666554332 3444545566666788899999999999875 2212334444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHcCCC------hhHHHHHHHHHHh---CCCCCCH-
Q 003397 711 GF---CRQGLMQEAMRMLYEMTNRGIRPCIFTY-----NTFVSGYAGQGM------FTEIDEVIKHMFQ---HNCKPNE- 772 (823)
Q Consensus 711 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~-----~~l~~~~~~~g~------~~~A~~~~~~~~~---~~~~p~~- 772 (823)
.+ ... ....|...+..++...+.|....| ...+......++ ++...+++....+ ..+.+..
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 43 333 345666777776665455554311 111122222222 3334444443322 2222222
Q ss_pred HHHHHHH----HHHHhcCChHHHHHHHHHHh
Q 003397 773 LTYKIVV----DGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 773 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 799 (823)
....+|+ ..+.+++++++|.+|++-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2223333 44678899999999998654
No 282
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.71 E-value=6.7 Score=37.49 Aligned_cols=164 Identities=15% Similarity=0.050 Sum_probs=109.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 003397 600 LRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLS-ICAKNSMYDRANEMLHLILESGM--QPNLVTYNNLMDM 676 (823)
Q Consensus 600 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~ 676 (823)
+......+...+.+..+...+.......... ......... .+...|+++.|...++....... ......+......
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 3334444455555666777777666543332 122222222 67789999999999998866322 1233444455555
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhH
Q 003397 677 YARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTE 755 (823)
Q Consensus 677 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 755 (823)
+...++.+.+...+.+............+..+...+...+++++|...+...... .|+ ...+..+...+...|.+++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHH
Confidence 7788899999999999887522213567778888888899999999999998874 344 4455555555557777999
Q ss_pred HHHHHHHHHhC
Q 003397 756 IDEVIKHMFQH 766 (823)
Q Consensus 756 A~~~~~~~~~~ 766 (823)
+...+.+..+.
T Consensus 255 ~~~~~~~~~~~ 265 (291)
T COG0457 255 ALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHh
Confidence 99999888874
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=6.5 Score=36.64 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 003397 495 FNTLISAYGRCGSGVDATKMFED 517 (823)
Q Consensus 495 ~~~li~~~~~~~~~~~a~~~~~~ 517 (823)
|+--...|..+|..+.|-..+++
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHH
Confidence 34444455555555554444443
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.41 E-value=0.071 Score=33.14 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 775 YKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 775 ~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
|..|++.|.+.|++++|.+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.19 E-value=0.88 Score=43.96 Aligned_cols=73 Identities=8% Similarity=0.038 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ-----HNCKPNELTYK 776 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 776 (823)
.++..++..+...|+++.+...++++.+. -+-|...|..++.+|...|+...|+..|+++.+ .|+.|-..+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 44555555666666666666666666553 123555566666666666666666666665543 45555444433
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.03 E-value=19 Score=40.61 Aligned_cols=194 Identities=11% Similarity=0.080 Sum_probs=100.5
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHccCChHHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 003397 608 FKCRALQGMERAFQELQKHGYKPDL-------VIFNSMLSI-CAKNSMYDRANEMLHLILESG----MQPNLVTYNNLMD 675 (823)
Q Consensus 608 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 675 (823)
....++.+|..+..++...-..|+. ..++.+-.. ....|++++|.++.+.....- ..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3445566666666655443222221 133333322 234678888888887776531 2234455667777
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCChhHH---HHH--HHHHHhcCC--HHHHHHHHHHHHHc--CCCC----CHHHHHH
Q 003397 676 MYARAGKCWKAEEILKGILKSGGTPDLVSY---NTV--IKGFCRQGL--MQEAMRMLYEMTNR--GIRP----CIFTYNT 742 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~--~~~A~~~~~~m~~~--~~~p----~~~~~~~ 742 (823)
+..-.|++++|..+.++..+.--.-+...+ ..+ ...+..+|. +++....|...... +-+| -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 777888888888887776643222233322 222 233455662 33333333333321 0111 1233444
Q ss_pred HHHHHHcCCChhHHHHHHHHHH----hCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 743 FVSGYAGQGMFTEIDEVIKHMF----QHNCKPNE--LTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+++++.+ ++.+..-..... .....|-. ..+..|+.++...|++++|...+.++....-+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 5555544 343333333332 22223222 22347788888889999998888887755433
No 287
>PRK09687 putative lyase; Provisional
Probab=92.98 E-value=10 Score=37.45 Aligned_cols=239 Identities=9% Similarity=0.021 Sum_probs=142.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHH
Q 003397 525 PCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLI 604 (823)
Q Consensus 525 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 604 (823)
+|.......+.++...|..+ +...+..+... +|...-...+.++.+.|+.+..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~----------------------- 87 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRC----------------------- 87 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccc-----------------------
Confidence 46666666677776666533 33333334332 2445555555555555543210
Q ss_pred HHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003397 605 LVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMY-----DRANEMLHLILESGMQPNLVTYNNLMDMYAR 679 (823)
Q Consensus 605 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 679 (823)
..++...+..+... .++..+....+.++...+.. .++.+.+..... .++..+-...+.++++
T Consensus 88 --------~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 88 --------QDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSV 154 (280)
T ss_pred --------hHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhc
Confidence 12333344444222 34555665666666554321 233444433333 2355666677777777
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 003397 680 AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG-LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDE 758 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 758 (823)
.|+ ..+...+-.+.+ .+|..+-...+.++.+.+ ...++...+..+.. .+|..+-...+.++.+.|+ ..|+.
T Consensus 155 ~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~ 226 (280)
T PRK09687 155 IND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLS 226 (280)
T ss_pred cCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHH
Confidence 776 567777777765 345555555566666553 24567777777774 4577777888888888888 67777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003397 759 VIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 759 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 819 (823)
.+-+.++.+ + .....+.++...|.. +|...+.++....+ +..+....+..+++
T Consensus 227 ~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~--d~~v~~~a~~a~~~ 279 (280)
T PRK09687 227 VLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD--DNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC--ChhHHHHHHHHHhc
Confidence 777777643 2 245678889999985 79999999998777 35555555555544
No 288
>PHA03247 large tegument protein UL36; Provisional
Probab=92.89 E-value=0.49 Score=58.25 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.3
Q ss_pred HHHHHH
Q 003397 251 VMLDVY 256 (823)
Q Consensus 251 ~ll~~~ 256 (823)
.||.+|
T Consensus 3113 lLi~AC 3118 (3151)
T PHA03247 3113 VLIEAC 3118 (3151)
T ss_pred HHHHHH
Confidence 333333
No 289
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.75 E-value=0.99 Score=34.89 Aligned_cols=61 Identities=11% Similarity=0.231 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003397 757 DEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVR 818 (823)
Q Consensus 757 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 818 (823)
.+-++.+....+-|++.+..+-+++|.+.+++.-|.++++.+..+... ...+|.-+.+.|+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lqeik 87 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQEIK 87 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHHHHh
Confidence 334444444444455555555555555555555555555544433333 1234444444444
No 290
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=4.1 Score=39.65 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003397 210 DVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYG 257 (823)
Q Consensus 210 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 257 (823)
....|..++.+|+..--.++|+..+++..+.|+ .+...|..=++.+.
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~-i~l~~yLr~VR~ls 344 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGV-IDLDQYLRHVRLLS 344 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCe-eeHHHHHHHHHHHH
Confidence 446677788888877777888888888777763 34545544444443
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.69 E-value=0.17 Score=30.87 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=20.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003397 760 IKHMFQHNCKPNELTYKIVVDGYCKARKYKEAM 792 (823)
Q Consensus 760 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 792 (823)
++++++..+. |...|..|+..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455553322 5777777777777777777775
No 292
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.36 E-value=1.2 Score=34.95 Aligned_cols=64 Identities=9% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 003397 756 IDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREI 820 (823)
Q Consensus 756 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 820 (823)
..+-++.+....+-|++.+..+.+++|.+.+++.-|.++++.+..+.....+ +|.-+++.|+-.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~-~Y~~~lqElkPt 92 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE-IYPYILQELKPT 92 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH-HHHHHHHHHhhH
Confidence 3444444444555555555555555666666666666666555555443322 555555555433
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.03 E-value=17 Score=37.66 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 003397 631 DLVIFNSMLSICAKNSMYDRANEMLHLILESGMQP---NLVTYNNLMDMYARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 631 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 696 (823)
...+|..++..+.+.|.++.|...+..+...+... +......-....-..|+..+|+..+++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44578888899999999999999999988754211 2233334455666789999999999988873
No 294
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.99 E-value=0.26 Score=29.98 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 774 TYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 774 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+|..++..|...|++++|.+.++++.+..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777888888888888888888777663
No 295
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=24 Score=39.07 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=63.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcc
Q 003397 394 IDAYGRAGKVNKALRLLNKMKESGCAP---NVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNK 470 (823)
Q Consensus 394 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 470 (823)
|+.+.+.+.+++|+.+.+..... .+ -...+..+|..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56677778888888776665432 23 2346677788888888888888887777764 566666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003397 471 GLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGR 504 (823)
Q Consensus 471 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 504 (823)
++......+ +-...-..+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554432222 2222112345667777766655
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.85 E-value=0.34 Score=30.06 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
+|..|...|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888754
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.81 E-value=8.3 Score=33.70 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=49.8
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 003397 679 RAGKCWKAEEILKGILKSGGTPDLVSY-NTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEID 757 (823)
Q Consensus 679 ~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 757 (823)
+.++.+.+..+++.+.-. .|..... ..-...+...|++.+|..+|+++.+. .|....-..|+..|.....-..-.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHHH
Confidence 455666666666666543 3333221 12234455666777777777766553 233333333333333332224444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003397 758 EVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMD 793 (823)
Q Consensus 758 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 793 (823)
.+.+++.+.+..|+. ..|++.+....+...|.+
T Consensus 98 ~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 455555554433322 224444444444444433
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.68 E-value=9.2 Score=33.92 Aligned_cols=134 Identities=16% Similarity=0.269 Sum_probs=63.5
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003397 338 SILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESG 417 (823)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 417 (823)
+.++.+.+.+++++...+..+++.+.+.|++.... .+...++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 34444555666666666777777777766654333 33334444444433333222211 222233332233221
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 003397 418 CAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKS 485 (823)
Q Consensus 418 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 485 (823)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012445566666777777777776664321 222233445555555555444444444433
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.43 E-value=9.7 Score=33.76 Aligned_cols=135 Identities=13% Similarity=0.201 Sum_probs=61.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003397 267 LGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDN 346 (823)
Q Consensus 267 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 346 (823)
.++++-+.+.++.++...|..+++.+.+.|.+....+++. .++-+|.......+-.+. +.+..+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3444455556666666677777777777766554444333 233334332222221111 1222222222222221
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 347 NCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKE 415 (823)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 415 (823)
=...+..++..+...|++-+|.++.+..... +......++++..+.+|...-..+|+-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0013445556666666666666666554222 111223345555555554444444444433
No 300
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.34 E-value=21 Score=37.37 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 003397 281 DEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVG 360 (823)
Q Consensus 281 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 360 (823)
|.....+++..+.......-.+-+..+|..-| -+-..|..++.+|..+ .-++-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455555666665555555666666665543 2344555566666655 445555666655554321 3333333333
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc
Q 003397 361 AYVRAGFYEEGAALIDTMSSKGLMP--N---AVTYTTLIDAYGRAGKVNKALRLLNKMKES-GCAPNVCTYNAVLGMLGK 434 (823)
Q Consensus 361 ~~~~~g~~~~a~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 434 (823)
.|-+ ++...+...|.+...+-+.- + ...|.-|+.. -..+.|..+.+..++... |...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55566666665554432110 1 1133333321 123455555555555432 222233344444455555
Q ss_pred CCCHHHHHHHHHHhhhC
Q 003397 435 KGRSEEMMKILCDMKSS 451 (823)
Q Consensus 435 ~g~~~~a~~~~~~~~~~ 451 (823)
..++++|+++++.+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66666666666655554
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.21 E-value=30 Score=39.05 Aligned_cols=170 Identities=11% Similarity=0.053 Sum_probs=85.8
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH---H--HHHHHHcCCH--hHHHHHHHHHHHcCC--
Q 003397 628 YKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNN---L--MDMYARAGKC--WKAEEILKGILKSGG-- 698 (823)
Q Consensus 628 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~~--~~A~~~~~~~~~~~~-- 698 (823)
.......+..+..+..-.|++++|..+..+..+..-+.+...+.. + ...+..+|+. .+....|........
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 344566777777777788888888888877665422233333322 2 2234456633 333333333332100
Q ss_pred CC----ChhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCC--
Q 003397 699 TP----DLVSYNTVIKGFCR-QGLMQEAMRMLYEMTNRGIRPCIFTY--NTFVSGYAGQGMFTEIDEVIKHMFQHNCK-- 769 (823)
Q Consensus 699 ~~----~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 769 (823)
.+ -.-++..+..++.+ .+.-.+|..-++--......|-...+ .+|+......|++++|...+.++......
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 11 11223333444433 11222233333322222222222222 36778888899999999888888753222
Q ss_pred --CCHHHHHHHHH--HHHhcCChHHHHHHHHH
Q 003397 770 --PNELTYKIVVD--GYCKARKYKEAMDFLSK 797 (823)
Q Consensus 770 --p~~~~~~~l~~--~~~~~g~~~~A~~~~~~ 797 (823)
++...-..++. .....|+.++|..+..+
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222222232 23456888888877776
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.17 E-value=4.2 Score=36.86 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHh---CCCCCCH----H
Q 003397 703 VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI--FTYNTFVSGYAGQGMFTEIDEVIKHMFQ---HNCKPNE----L 773 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~----~ 773 (823)
..+..+++-|++.|+.++|++.|.++.+....+.. ..+..+++.....|++..+...+.++.. .|-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34556666677777777777777776665444432 3355566666666777776666666653 2111111 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 774 TYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 774 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
.|..| .+...|++.+|-+.+-...
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 12222 3344677777766665554
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.70 E-value=40 Score=39.49 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003397 366 GFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKIL 445 (823)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 445 (823)
++++.|+.-+.++. ...|.-.++.--+.|.+++|+.++..=.+. -...|.+....+...+++++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHH
Confidence 45566655555443 112333444445566666666665432221 2234444555555666677776666
Q ss_pred HHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003397 446 CDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDR--DTFNTLISAYGRCGSGVDATKMFEDMMKTGF 523 (823)
Q Consensus 446 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 523 (823)
+..-+ ..-.+.+|...|++++|..+..++... .+. .+-..|+.-+...++.-+|-++..+....
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-- 1028 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--
Confidence 65432 123455667777777777776665421 111 12255666677777777777777766542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003397 524 TPCVTTYNAFLNALARRGDWKAAESVILDM 553 (823)
Q Consensus 524 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 553 (823)
....+..|++...|++|..+...-
T Consensus 1029 ------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 123344566667777777665544
No 304
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.69 E-value=0.39 Score=31.25 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=18.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 777 IVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 777 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
.|+.+|...|+.+.|.++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777777777777777777543
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=32 Score=38.19 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=34.6
Q ss_pred HhccCChHHHHHHHhhcccCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003397 186 LGKESRHSIASKLLDLIPLEKYS-LDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKM 259 (823)
Q Consensus 186 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 259 (823)
+.+.+.+++|..+.......-.. ....++...|..+...|++++|-...-.|... +...|...+..+...
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 33445555665555544332100 12345555666666666666666666665532 344444444444443
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.48 E-value=8.9 Score=32.14 Aligned_cols=84 Identities=6% Similarity=0.084 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHH
Q 003397 734 RPCIFTYNTFVSGYAGQGMF---TEIDEVIKHMFQH-NCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDES 809 (823)
Q Consensus 734 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 809 (823)
.+...+--.+.+++.++.+. .+.+.+++.+.+. ...-......-|.-++++.|++++++++++.+++..|++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q-- 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ-- 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH--
Confidence 45666777788888877654 5567788888752 22223444455777889999999999999999999988753
Q ss_pred HHHHHHHHHH
Q 003397 810 VKRLTFRVRE 819 (823)
Q Consensus 810 ~~~l~~~~~~ 819 (823)
...|...+.+
T Consensus 107 a~~Lk~~ied 116 (149)
T KOG3364|consen 107 ALELKETIED 116 (149)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.41 E-value=4.8 Score=36.49 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=38.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 003397 634 IFNSMLSICAKNSMYDRANEMLHLILESGMQP--NLVTYNNLMDMYARAGKCWKAEEILKGIL 694 (823)
Q Consensus 634 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 694 (823)
.+..+...|++.|+.++|.+.|.++.+....+ -...+..++......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55566667777777777777777766643322 22344556666666677777666666654
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.40 E-value=13 Score=33.52 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=67.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 003397 673 LMDMYARAGKCWKAEEILKGILKSGGTPDL--VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ 750 (823)
Q Consensus 673 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 750 (823)
+...+..+|++++|...++..+.....-+. .+--.|.......|.+|+|+..++...+.++. ......-.+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 345677899999999999988753211111 22223567788899999999999887765432 33344557789999
Q ss_pred CChhHHHHHHHHHHhCC
Q 003397 751 GMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 751 g~~~~A~~~~~~~~~~~ 767 (823)
|+-++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999865
No 309
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=16 Score=34.29 Aligned_cols=196 Identities=12% Similarity=0.103 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHH----cCCCCCHH
Q 003397 599 LLRTLILVNFKCRALQGMERAFQELQKHGYKPDL------VIFNSMLSICAKNSMYDRANEMLHLILE----SGMQPNLV 668 (823)
Q Consensus 599 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ 668 (823)
.+..-...|...+++++|...+.+..+- ...+. -.|...+-..-....+.++..++++... .| .|+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtA 110 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTA 110 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchH
Confidence 4445556666677777777666655421 01111 1222333333334445555555554332 22 22222
Q ss_pred HHHHHHHH--HHHcCCHhHHHHHHHHHHHcCC--CCCh---hHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH
Q 003397 669 TYNNLMDM--YARAGKCWKAEEILKGILKSGG--TPDL---VSYNTVIKGFCRQGLMQEAMRMLYEMTNR----GIRPCI 737 (823)
Q Consensus 669 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~ 737 (823)
.. +|-.+ ..+..++++|+++|++....-. ..+. ..+......+.+..++++|-..+.+-... .-.++.
T Consensus 111 Am-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 111 AM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 11 11111 1233345555555555442100 1111 22334445555566666655555443221 001111
Q ss_pred -HHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003397 738 -FTYNTFVSGYAGQGMFTEIDEVIKHMFQHN--CKP-NELTYKIVVDGYCKARKYKEAMDFLSKI 798 (823)
Q Consensus 738 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 798 (823)
..|...+-.+....++..|.+.++.-.+.+ ..+ +..+...|+.+| ..|+.+++.+++..-
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcCh
Confidence 224444445555666777777776654321 111 344555555444 456666666665443
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.33 E-value=0.42 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 775 YKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 775 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+..++.+|.+.|++++|.+.++++.+..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445677888888888888888888887775
No 311
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.27 E-value=10 Score=34.14 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=56.9
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC
Q 003397 677 YARAGKCWKAEEILKGILKSGGTPD----LVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQG 751 (823)
Q Consensus 677 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 751 (823)
+.+.|++++|..-|.+.++...... .+.|..-..++.+.+.++.|+.-..+.++- .|. ...+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHhhh
Confidence 4466777777777777776421111 234555566777888888888887777773 332 222333355777778
Q ss_pred ChhHHHHHHHHHHhC
Q 003397 752 MFTEIDEVIKHMFQH 766 (823)
Q Consensus 752 ~~~~A~~~~~~~~~~ 766 (823)
.+++|++-|+++++.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 888888888888874
No 312
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.25 E-value=1.9 Score=29.50 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 003397 775 YKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREI 820 (823)
Q Consensus 775 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 820 (823)
...++-++.+.|++++|.++++.+++..|++. ....|...+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~--Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR--QAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHH
Confidence 34566788999999999999999999999863 445555555443
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.17 E-value=3.5 Score=40.01 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 003397 667 LVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN-----RGIRPCIFTYN 741 (823)
Q Consensus 667 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 741 (823)
..++..++..+..+|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ -|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567788888888999999999999998764 34778888999999999999999999888765 37777776666
Q ss_pred HHHHH
Q 003397 742 TFVSG 746 (823)
Q Consensus 742 ~l~~~ 746 (823)
.+..+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.88 E-value=39 Score=38.10 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=13.1
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 003397 212 RAYTSILHAYS-KAGKYEKAISLFEKVK 238 (823)
Q Consensus 212 ~~~~~li~~~~-~~g~~~~A~~~~~~m~ 238 (823)
.++-.+...|. ...++++|+..+++..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~ 87 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAI 87 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444 3345555555555443
No 315
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=89.84 E-value=23 Score=35.44 Aligned_cols=188 Identities=12% Similarity=0.028 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCC
Q 003397 611 RALQGMERAFQELQKHGYKPDLVIFNSMLSICAK----NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYAR----AGK 682 (823)
Q Consensus 611 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 682 (823)
+++..+...+......+ +......+...|.. ..+..+|.++|..+.+.|. ......|..+|.. ..+
T Consensus 55 ~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 55 PDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccC
Confidence 34455555555544432 22333334444432 4457788888887776653 2334445555554 447
Q ss_pred HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CC
Q 003397 683 CWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQG-------LMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAG----QG 751 (823)
Q Consensus 683 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g 751 (823)
..+|...|+++.+.|..+...+...+...|..-. +...|...|.++.+.+ +......|...|.. ..
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCc
Confidence 8888888888888775433222344444444321 2347888888888765 34444444444433 44
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------ChHHHHHHHHHHhhcCCCCCHHHHH
Q 003397 752 MFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKAR---------------KYKEAMDFLSKIKERDDSFNDESVK 811 (823)
Q Consensus 752 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~~~~~~~~ 811 (823)
+.++|...|++..+.|. ......+. .+...| +...|..++............+..+
T Consensus 206 d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 78899999999988765 33333444 555555 8888999999999888877666555
No 316
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=45 Score=38.38 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=20.7
Q ss_pred HHhcCCHHHHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHcC
Q 003397 712 FCRQGLMQEAMRMLYEMTNR-------------GIRPCIFTYNTFVSGYAGQ 750 (823)
Q Consensus 712 ~~~~g~~~~A~~~~~~m~~~-------------~~~p~~~~~~~l~~~~~~~ 750 (823)
+.+.|+.++|+.++-..+.. ...++...|.+++..|...
T Consensus 694 l~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 694 LGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred HhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 33666666666665544431 1233555666666665554
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.50 E-value=14 Score=32.43 Aligned_cols=97 Identities=12% Similarity=0.026 Sum_probs=63.2
Q ss_pred HHHHHHH---HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003397 704 SYNTVIK---GFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNT-FVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVV 779 (823)
Q Consensus 704 ~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 779 (823)
+.+.|+. .-.+.++.+++..++..+.- +.|....... -...+...|+|++|+.+++.+.+.. |.......|.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence 3444443 34567899999999999987 5777554432 3456788999999999999998653 3333334444
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 780 DGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 780 ~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
-.|....+-..=..+.+++.+.+++
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCC
Confidence 4444443333445566777777754
No 318
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.43 E-value=11 Score=36.19 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 003397 709 IKGFCRQGLMQEAMRMLYEMTNR--GIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYC--- 783 (823)
Q Consensus 709 ~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 783 (823)
|.+++..+++.+++...-+--+. .++| .+...-|-.|.+.|....+.++....++..-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34555555555554443332221 1222 2222223335555555555555555543111111222444433333
Q ss_pred --hcCChHHHHHHH
Q 003397 784 --KARKYKEAMDFL 795 (823)
Q Consensus 784 --~~g~~~~A~~~~ 795 (823)
-.|.++||++++
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 235555555555
No 319
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.27 E-value=42 Score=37.68 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=33.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc--
Q 003397 324 LQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGL-MPNAVTYTTLIDAYGRA-- 400 (823)
Q Consensus 324 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~-- 400 (823)
...+.-.|+++.|++.+-+. .+...|.+.+...+.. .|-+......-..+..... .+...-+..||..|++.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~---~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAY---YGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHH---TT------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHH---cCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34455567777777776651 1112233333333222 2222222211122222110 11114566777777763
Q ss_pred -CCHHHHHHHHHHHHHC
Q 003397 401 -GKVNKALRLLNKMKES 416 (823)
Q Consensus 401 -g~~~~A~~~~~~~~~~ 416 (823)
.+..+|.+.|-.+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 4677777777665543
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.08 E-value=0.014 Score=51.19 Aligned_cols=129 Identities=14% Similarity=0.166 Sum_probs=76.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 003397 638 MLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGL 717 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 717 (823)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556667777888888888887655556777888888888887777777777621 11223355667777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 003397 718 MQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKY 788 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 788 (823)
+++|.-++.++-...-- +..+...+++++|++++.+. .+...|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCcc
Confidence 77777766654331100 11123344555555332222 2566777777777666553
No 321
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.89 E-value=19 Score=33.09 Aligned_cols=83 Identities=16% Similarity=0.057 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003397 150 SGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEK 229 (823)
Q Consensus 150 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 229 (823)
.|.+..|.--|..+..-.+ .-+.+++.+.--+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++.-
T Consensus 78 lGL~~LAR~DftQaLai~P-----~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~L 151 (297)
T COG4785 78 LGLRALARNDFSQALAIRP-----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKL 151 (297)
T ss_pred hhHHHHHhhhhhhhhhcCC-----CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHh
Confidence 3444444444544444322 235566666666666666666666666665544332222222222222 2355555
Q ss_pred HHHHHHHHH
Q 003397 230 AISLFEKVK 238 (823)
Q Consensus 230 A~~~~~~m~ 238 (823)
|.+-|...-
T Consensus 152 Aq~d~~~fY 160 (297)
T COG4785 152 AQDDLLAFY 160 (297)
T ss_pred hHHHHHHHH
Confidence 555554443
No 322
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.88 E-value=6.5 Score=38.11 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=5.7
Q ss_pred cCCHHHHHHHH
Q 003397 150 SGYRERALLLF 160 (823)
Q Consensus 150 ~~~~~~A~~~~ 160 (823)
.|++..|.+-+
T Consensus 386 aGDy~~AiETl 396 (498)
T KOG4849|consen 386 AGDYKGAIETL 396 (498)
T ss_pred cccchhHHHHH
Confidence 45555555443
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.75 E-value=7.5 Score=36.48 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=64.6
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHcCCChh-------HHHHHHHHHHhCCCCC-----CHH
Q 003397 712 FCRQGLMQEAMRMLYEMTN----RGIRPC--IFTYNTFVSGYAGQGMFT-------EIDEVIKHMFQHNCKP-----NEL 773 (823)
Q Consensus 712 ~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~p-----~~~ 773 (823)
|.....+++|++.|.-++- .+-++. ...+..+.+.|...|+-+ .|.+.|++..+..-.| +..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3344556666665554432 122333 334566777888887743 4555555555422111 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003397 774 TYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREIL 821 (823)
Q Consensus 774 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 821 (823)
+...++....+.|+.++|.+++.++....-... ...+..+.++.|
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~---~~~l~~~AR~~w 211 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK---EPKLKDMARDQW 211 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC---cHHHHHHHHHHH
Confidence 566788889999999999999999997664443 334444545444
No 324
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.34 E-value=0.66 Score=28.28 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHhcCCHHHH
Q 003397 703 VSYNTVIKGFCRQGLMQEA 721 (823)
Q Consensus 703 ~~~~~l~~~~~~~g~~~~A 721 (823)
.+|+.+...|...|++++|
T Consensus 14 ~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 14 EAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444443
No 325
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.31 E-value=1.2 Score=26.98 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHH
Q 003397 741 NTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 741 ~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
..++.+|...|++++|+..+++++
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHH
Confidence 333334444444444444444443
No 326
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.12 E-value=21 Score=32.77 Aligned_cols=180 Identities=14% Similarity=0.125 Sum_probs=86.4
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 003397 610 CRALQGMERAFQELQKHGYKPD-LVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEE 688 (823)
Q Consensus 610 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 688 (823)
.|-..-|..-|.+.... .|+ ..+||.+.--+...|+++.|.+.|+...+..+.-+-...|.=+.. .--|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHH
Confidence 33344444444444433 444 346777776677788888888888888776544333333332222 23577777777
Q ss_pred HHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003397 689 ILKGILKSGGTPDL--VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 689 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
-+.+.-+.+.. |+ ..|-.++. ..-+..+|..-+.+=.+ ..|..-|...+-.+. .|++.+ ..+++++.+.
T Consensus 155 d~~~fYQ~D~~-DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPN-DPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY-LGKISE-ETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCC-ChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH-HhhccH-HHHHHHHHhh
Confidence 66666554211 22 22222211 22234455443322211 123333432222221 122211 2223333221
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 767 NCKPN-------ELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 767 ~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
-..+ ..+|--|+.-|...|+.++|..+++-+...+
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1111 3456667777777788888777777665443
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.87 E-value=4.2 Score=36.10 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=50.9
Q ss_pred HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---CC-------HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC
Q 003397 683 CWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQ---GL-------MQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQG 751 (823)
Q Consensus 683 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 751 (823)
++.|++.++.....+ +.|...++....++... .. +++|+.-|++.+. +.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 566777777655443 34566555555554432 22 3444444555555 6677 467777777776543
Q ss_pred C-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003397 752 M-----------FTEIDEVIKHMFQHNCKPNELTYKIVVDGY 782 (823)
Q Consensus 752 ~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 782 (823)
. +++|...|+++.+ .+|+...|+.-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 2 3445555555554 567777776665554
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.69 E-value=1.1 Score=26.99 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.46 E-value=5.7 Score=40.70 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=84.1
Q ss_pred HccCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003397 643 AKNSMYDRANEMLHL-ILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEA 721 (823)
Q Consensus 643 ~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 721 (823)
...|+...|-+-+.. +....-.|+..... ...+...|+++.+...+...... +.....+..+++...-+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 356777777554444 44433344544433 34467889999999988776543 334556777888888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 003397 722 MRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNC 768 (823)
Q Consensus 722 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 768 (823)
..+-+-|+...+. ++.............|-+|++...|+++...+.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 9999888876554 444444444455667888999999999987543
No 330
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.30 E-value=20 Score=31.62 Aligned_cols=122 Identities=10% Similarity=0.058 Sum_probs=57.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChh-HHHH--HHHHHHhcCCHH
Q 003397 644 KNSMYDRANEMLHLILESGMQPNL-VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLV-SYNT--VIKGFCRQGLMQ 719 (823)
Q Consensus 644 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~~~ 719 (823)
+.+..++|+.-|..+.+.|...-. -............|+...|...|+++-+....|-.. -... -...+..+|-++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 445556666666666554433111 111122233445566666666666665432222221 0111 112334556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 720 EAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 720 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+.....+-+...+-.-....-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6655555554433322333344555555666666666666666654
No 331
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.82 E-value=46 Score=37.06 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003397 211 VRAYTSILHAYSKAGKYEKAISLFEK 236 (823)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~~~~~ 236 (823)
+.-|+ .+..+.-.|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45554 56666667777777777743
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=10 Score=40.32 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=56.5
Q ss_pred HHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCH
Q 003397 184 RILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSW 263 (823)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 263 (823)
++..+.|+++.|.++..... +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+ .
T Consensus 645 elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~-~ 708 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGN-A 708 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCC-h
Confidence 44456677777766665433 556677777777777777777777776554 3344444544454 1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003397 264 DRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAG 307 (823)
Q Consensus 264 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 307 (823)
+....+-...++.| + .|...-+|...|+++++.+++..
T Consensus 709 ~~l~~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 709 EGLAVLASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHh
Confidence 32333333333333 1 12223345556666666666543
No 333
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=86.70 E-value=1.2 Score=45.23 Aligned_cols=10 Identities=10% Similarity=0.424 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 003397 354 TYNEVVGAYV 363 (823)
Q Consensus 354 ~~~~li~~~~ 363 (823)
||..++..+.
T Consensus 472 Tf~~il~tLL 481 (817)
T KOG1925|consen 472 TFRCILATLL 481 (817)
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 334
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.58 E-value=23 Score=39.41 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003397 352 SVTYNEVVGAYVRAGFYEEGAALIDTM 378 (823)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~a~~~~~~~ 378 (823)
..-|+ .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56666 677778888899998888543
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.49 E-value=15 Score=32.84 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 718 MQEAMRMLYEMTNRGIRPCIFTYNTFVSGY 747 (823)
Q Consensus 718 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 747 (823)
+++|.+.|++..+ ..|+...|+.-+..+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3444555555554 456666666555444
No 336
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.47 E-value=58 Score=36.05 Aligned_cols=121 Identities=13% Similarity=0.144 Sum_probs=70.6
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 003397 641 ICAKNSMYDRANEMLHLILESGMQPNLV--TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLM 718 (823)
Q Consensus 641 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 718 (823)
++..-|+-++|..+.+++.... .|-.. -..++..+|+-.|+.....+++.-.... ...|+.-+..+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3445566677777777777543 22111 1234556677777777766666655432 233444444444556666777
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 719 QEAMRMLYEMTNRGIRPCIF--TYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 719 ~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+....+.+-+.++ ..|-.. +-..|.-+|.-.|+ .+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7777777666553 333322 22345556666776 788888888874
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=11 Score=36.51 Aligned_cols=103 Identities=13% Similarity=0.239 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 003397 277 GLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLE---GYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSV 353 (823)
Q Consensus 277 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 353 (823)
|..-...+...++..-....+.+++..++-.+... ...++...+ +.++.+ -.-+.++++.++..=++.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 33334444455554444456666666666665543 112222221 222222 2334556666666666667777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 003397 354 TYNEVVGAYVRAGFYEEGAALIDTMSSK 381 (823)
Q Consensus 354 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 381 (823)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777776666666655544
No 338
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.02 E-value=0.67 Score=52.05 Aligned_cols=8 Identities=38% Similarity=0.949 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 003397 214 YTSILHAY 221 (823)
Q Consensus 214 ~~~li~~~ 221 (823)
|..|+..|
T Consensus 477 yqkLLkny 484 (2365)
T COG5178 477 YQKLLKNY 484 (2365)
T ss_pred HHHHHHHH
Confidence 33333333
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.72 E-value=48 Score=34.43 Aligned_cols=120 Identities=11% Similarity=0.059 Sum_probs=68.5
Q ss_pred HcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003397 364 RAGFYEEGAA-LIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMM 442 (823)
Q Consensus 364 ~~g~~~~a~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 442 (823)
..|++..|-+ +++.+....-.|+.....+ ..+...|+++.+.+.+...... +.....+..++++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 4566655543 4444444433444433333 3345677788777777655432 2335566777777777788888888
Q ss_pred HHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 003397 443 KILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCG 487 (823)
Q Consensus 443 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 487 (823)
.+-+-|....+. +...........-..|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 877777765444 32222222223344566777777777765543
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.60 E-value=69 Score=36.15 Aligned_cols=195 Identities=13% Similarity=0.113 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HCCCCCC--HHHHHHHHHHHH-ccCCHHHHHHHHHHHHhCCCCCCcc-
Q 003397 244 PTLVTYNVMLDVYGKMGRSWDRILGLLDEMR-SRGLEFD--EFTCSTVISACG-REGLLNEAKEFFAGLKLEGYVPGTV- 318 (823)
Q Consensus 244 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~-~~~~~~~--~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~- 318 (823)
.+...|..||.. +++.++-+. +..+.|. ..++--+...+. ...+++.|+.++++....--.++..
T Consensus 28 ~~l~~Y~kLI~~----------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 28 EQLKQYYKLIAT----------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhHHHHHHHHHH----------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 355556666533 344444444 3333433 235555566555 6788888988888765432122211
Q ss_pred ----cHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCC
Q 003397 319 ----TYNSLLQVFGKAGVYSEALSILKEMEDNN----CPPDSVTYNEV-VGAYVRAGFYEEGAALIDTMSSKG---LMPN 386 (823)
Q Consensus 319 ----~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~---~~p~ 386 (823)
....++..+.+.+... |...+++..+.- ..+-...|..+ +..+...++...|.+.++.+...- ..+-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2334566666666655 888877765431 11222333333 233333478888888888776542 2333
Q ss_pred HHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHH--HcCCCHHHHHHHHHHhh
Q 003397 387 AVTYTTLIDAYG--RAGKVNKALRLLNKMKESG---------CAPNVCTYNAVLGML--GKKGRSEEMMKILCDMK 449 (823)
Q Consensus 387 ~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~ 449 (823)
...+..++.+.. +.+..+++.+.++++.... ..|...+|..+++.+ ...|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444554444 3455666666666663321 123455666666544 45677666666655543
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.54 E-value=5.5 Score=31.00 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 721 AMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 721 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
+.+-++.+....+.|++.+..+.+++|.+.+++.-|+++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444445555666666666666666666666666665554
No 342
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.45 E-value=3.6 Score=37.55 Aligned_cols=77 Identities=6% Similarity=0.013 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCK--PNELTYKIVVDG 781 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~ 781 (823)
|.+.-+..+.+.+.+.+|+.+.++-++.+ +-|..+-..|+..||-.|+|++|..-++-.-+...+ +....|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34555677788888888888888777642 234556677888888889999888888777653221 235566666654
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=10 Score=40.33 Aligned_cols=99 Identities=22% Similarity=0.186 Sum_probs=56.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 003397 294 REGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAA 373 (823)
Q Consensus 294 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 373 (823)
+.|+++.|.++..+.. +..-|..|.....+.+++..|.+.|....+ |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4567776666655432 344566777777777777777766655443 3345555556666665555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003397 374 LIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKM 413 (823)
Q Consensus 374 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 413 (823)
+-....+.|.. |. ..-+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGKN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhccc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 55555555532 22 223444567777776666543
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.31 E-value=1.8 Score=27.63 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 003397 773 LTYKIVVDGYCKARKYKEAMDFLSKIKER 801 (823)
Q Consensus 773 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 801 (823)
.++..|+..|...|++++|..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677788888888888888888777643
No 345
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.21 E-value=9.4 Score=37.03 Aligned_cols=102 Identities=17% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCC---CCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 003397 417 GCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSG---CSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRD 493 (823)
Q Consensus 417 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 493 (823)
|......+...++..-....+++.+...+-++...- ..++ .+-.++++.+. .-+.+.++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 344445555555555555666666666666665430 1111 11122222222 233445555555555666666666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003397 494 TFNTLISAYGRCGSGVDATKMFEDMMK 520 (823)
Q Consensus 494 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 520 (823)
+++.+|+.+.+.+++.+|..+...|+.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666665555543
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.17 E-value=74 Score=35.30 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=87.8
Q ss_pred HHccCCHHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 003397 292 CGREGLLNEAKEFFAGLKL-------EGYVPGTVTYNSLLQVFGKAG-----VYSEALSILKEMEDNNCPPDSVTYNEVV 359 (823)
Q Consensus 292 ~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~~li 359 (823)
+....|.+.|..+|..+.+ .| ......-+..+|.+.. +.+.|..++....+.|.+ +...+ +.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg 332 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LG 332 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HH
Confidence 3345677777777776655 44 3345556667776643 667788888888887733 32222 33
Q ss_pred HHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003397 360 GAYVR---AGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYG--RAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGK 434 (823)
Q Consensus 360 ~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 434 (823)
..+.. ..+...|.++|....+.|.. ....+..++-... ...+...|..++++..+.|. +....-...+..+..
T Consensus 333 ~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 333 VLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc
Confidence 33332 24577888888888888753 2222222221111 22368888888888888772 232222223333444
Q ss_pred CCCHHHHHHHHHHhhhCCC
Q 003397 435 KGRSEEMMKILCDMKSSGC 453 (823)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~~ 453 (823)
++.+.+.-.+..+.+.|.
T Consensus 411 -~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAELGY 428 (552)
T ss_pred -ccccHHHHHHHHHHHhhh
Confidence 667776666666665543
No 347
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.03 E-value=75 Score=35.26 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH
Q 003397 367 FYEEGAALIDTMSSKGLMPNAVTYTTLID----A-YGRAGKVNKALRLLNKMKE 415 (823)
Q Consensus 367 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~----~-~~~~g~~~~A~~~~~~~~~ 415 (823)
+..++.+.++...+.|.. ..-..+.. + +....|.+.|+.+|+.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 356777888887777632 22222222 2 3345678888888877765
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.86 E-value=2.1 Score=24.87 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 774 TYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 774 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
.|..++..|...|++++|...+++..+..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556667777777777777777777766554
No 349
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.74 E-value=43 Score=32.23 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=20.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHh----hhCCCCCChhHH
Q 003397 427 AVLGMLGKKGRSEEMMKILCDM----KSSGCSPNRITW 460 (823)
Q Consensus 427 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~p~~~~~ 460 (823)
.++..+.+.|.+.+|+.+...+ ++..-+++..+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 4677788888888887765443 333444544443
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.47 E-value=45 Score=32.31 Aligned_cols=42 Identities=19% Similarity=0.050 Sum_probs=23.1
Q ss_pred HHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003397 193 SIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEK 236 (823)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 236 (823)
..|.++|..+..+.- ...+-+.++..+....+..+|...|..
T Consensus 150 ~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHH
Confidence 566777766655421 223344466666666666666555543
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=83.32 E-value=8.4 Score=31.65 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 724 MLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 724 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
-+..+...++.|+......-+++|.+-+|+.-|+++++-+.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555444
No 352
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.10 E-value=66 Score=33.93 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 003397 613 LQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKG 692 (823)
Q Consensus 613 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 692 (823)
..-.+-+-.+|...| -+-..|..+++.|..+ ..++-..+|+++.+.... |.+.-..|...|-+ ++.+.+..+|.+
T Consensus 82 ~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 82 NQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHH
Confidence 333334444454443 2556677777777776 457777788877776554 55555555555554 777777777777
Q ss_pred HHHcCCCC--C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 003397 693 ILKSGGTP--D---LVSYNTVIKGFCRQGLMQEAMRMLYEMTNR-GIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH 766 (823)
Q Consensus 693 ~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 766 (823)
+...-++. + -..|.-+...- ..+.+..+.+..++... |..--.+.+.-+-.-|....++++|++++..++++
T Consensus 157 a~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 157 ALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 76431110 1 12344443321 23456666666666542 33333344444556677777888888888877765
Q ss_pred CCCCCHHHHHHHHHHH
Q 003397 767 NCKPNELTYKIVVDGY 782 (823)
Q Consensus 767 ~~~p~~~~~~~l~~~~ 782 (823)
+-+ |...-..++..+
T Consensus 235 d~k-~~~ar~~~i~~l 249 (711)
T COG1747 235 DEK-DVWARKEIIENL 249 (711)
T ss_pred cch-hhhHHHHHHHHH
Confidence 433 444444444444
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.07 E-value=1.5e+02 Score=38.08 Aligned_cols=61 Identities=18% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003397 668 VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 668 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
.+|....+...+.|+++.|...+-...+.+ .| ..+.-.+..+...|+...|+.++++.++.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 455566666666777777766666555543 22 23334455566677777777777766653
No 354
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.99 E-value=3.1 Score=26.48 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
+++.|...|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444555555555555555555555443
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.90 E-value=14 Score=33.79 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003397 719 QEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQH---NCKPNELTYKIVVDGYCKARKYKEAMDF 794 (823)
Q Consensus 719 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 794 (823)
++|.+.|-++...+.--+......|+.-|. ..+.++++.++.++++. +-.+|+..+..|+..|.+.|++++|.-|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 667777777766554444444555554444 45667777777777652 2245677788888888888888777543
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.49 E-value=25 Score=27.92 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 003397 265 RILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQ 325 (823)
Q Consensus 265 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 325 (823)
++.+-++.+...++.|+..+..+.+++|.+.+++..|.++|+.++.+ +......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666677777788889999999999999999999999999888765 1222225665553
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.40 E-value=14 Score=33.73 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhHH
Q 003397 715 QGLMQEAMRMLYEMTNR---GIRPCIFTYNTFVSGYAGQGMFTEI 756 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 756 (823)
..+.++|+.++.+.++. +-.+|...+..|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444555554444431 1234445555555555555554444
No 358
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.27 E-value=9.2 Score=37.48 Aligned_cols=93 Identities=16% Similarity=0.064 Sum_probs=52.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 003397 640 SICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQ 719 (823)
Q Consensus 640 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 719 (823)
+-|.++|.+++|+++|...+.... .+.+++..-..+|.+.+.+..|..-....+..+ ..-...|..-+.+--..|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 346677777777777777665432 166666666677777777776666555554321 001123333333334445566
Q ss_pred HHHHHHHHHHHcCCCCC
Q 003397 720 EAMRMLYEMTNRGIRPC 736 (823)
Q Consensus 720 ~A~~~~~~m~~~~~~p~ 736 (823)
+|.+-++..++ +.|+
T Consensus 183 EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHhHHHHHh--hCcc
Confidence 66665555555 4555
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=15 Score=34.37 Aligned_cols=116 Identities=9% Similarity=-0.015 Sum_probs=65.1
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCChh
Q 003397 677 YARAGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFT-YNTFVSGYAGQGMFT 754 (823)
Q Consensus 677 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~ 754 (823)
|....++..|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..=..+.++ +.||.+- ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777777666653 5555 4455556666677777777666666665 5666443 334455556666677
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003397 755 EIDEVIKHMFQ----HNCKPNELTYKIVVDGYCKARKYKEAMDFLS 796 (823)
Q Consensus 755 ~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 796 (823)
+|+..+.++.. ..+.+-..++..|.++=.+.=...++.++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 77777777743 2233334445555444333333334444333
No 360
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=80.10 E-value=77 Score=32.74 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003397 671 NNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYA 748 (823)
Q Consensus 671 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 748 (823)
..|+.-|...|+..+|...++++-- .+-....++.+++.+.-+.|+-...+.++++.-..|+ .|-+.|-.+|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 4677888899999999999887731 1222457788899999999988888888888877654 35555555543
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.53 E-value=2.7 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 003397 775 YKIVVDGYCKARKYKEAMDFLS 796 (823)
Q Consensus 775 ~~~l~~~~~~~g~~~~A~~~~~ 796 (823)
...+...+...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456666666777777766654
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.99 E-value=7.2 Score=41.21 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=59.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003397 714 RQGLMQEAMRMLYEMTNRGIRPC--IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEA 791 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 791 (823)
..|+...|.+.+..... ..|- .+....|.....+.|..-+|-+++.+.+... ....-++..++++|..-.+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 45677777777666554 2232 2234455666666677777777777776644 23556666777777777777777
Q ss_pred HHHHHHHhhcCCCCCHH
Q 003397 792 MDFLSKIKERDDSFNDE 808 (823)
Q Consensus 792 ~~~~~~~~~~~~~~~~~ 808 (823)
++.++.+.+++|++.+.
T Consensus 696 ~~~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHHHhcCCCChhh
Confidence 77777777777776543
No 363
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=78.93 E-value=59 Score=30.73 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=34.0
Q ss_pred HHHHHHHHHHH---------hcCChHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHHHh
Q 003397 773 LTYKIVVDGYC---------KARKYKEAMDFLSKIKERDDSFNDE-SVKRLTFRVREIL 821 (823)
Q Consensus 773 ~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 821 (823)
..|..++..+. ..++...|..+++++.+++++---. ..+.+.++|+..-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~~ 228 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKALA 228 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcc
Confidence 34555555553 4567888999999999999886443 4677777776543
No 364
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.52 E-value=60 Score=30.62 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHH
Q 003397 740 YNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDES 809 (823)
Q Consensus 740 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 809 (823)
+.++..++...|++-++++.-.+++..... |...|..-+.+....=+..+|.+-+.++++++|.....+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 444455666777787888877777765332 677776666676666677788888888888888765543
No 365
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.48 E-value=1.2e+02 Score=34.18 Aligned_cols=117 Identities=7% Similarity=-0.032 Sum_probs=67.6
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 003397 645 NSMYDRANEMLHLILESG-MQPNL--VTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEA 721 (823)
Q Consensus 645 ~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 721 (823)
..+.+.|..++....... +.+.. .++..+.......+...+|...++...... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345688888888765432 22221 223333333333322556666666554322 2334444445555578888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 003397 722 MRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 722 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
...+..|.+.. .-...-..-+.+++...|+.++|..+|+.+.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888875531 2223334456677677888899999888875
No 366
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.52 E-value=92 Score=32.18 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHH------------HHHHHHHHHHHcCCHhHHHHHHHHHH---------------
Q 003397 642 CAKNSMYDRANEMLHLILESGMQPNLV------------TYNNLMDMYARAGKCWKAEEILKGIL--------------- 694 (823)
Q Consensus 642 ~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~--------------- 694 (823)
+.....++++...|..++... .|+.. ++..+...|.+.|+.+.|.+++++.+
T Consensus 4 f~hs~~Y~~~q~~F~~~v~~~-Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~ 82 (360)
T PF04910_consen 4 FEHSKAYQEAQEQFYAAVQSH-DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFR 82 (360)
T ss_pred EeCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred ----------HcCCCCChhHHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCCChhHHHHHH
Q 003397 695 ----------KSGGTPDLVSYNTV---IKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYA-GQGMFTEIDEVI 760 (823)
Q Consensus 695 ----------~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~ 760 (823)
.....-|...|.++ +..+.+.|-+..|+++.+-+..-+..-|......+|+-|+ +.++++--+++.
T Consensus 83 ~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 83 SNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred cccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Q ss_pred HHHHh------CCCCCCHHHHHHHHHHHHhcCCh---------------HHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003397 761 KHMFQ------HNCKPNELTYKIVVDGYCKARKY---------------KEAMDFLSKIKERDDSFNDESVKRLTFRV 817 (823)
Q Consensus 761 ~~~~~------~~~~p~~~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 817 (823)
+.... ...-||. -.+++-++...++. ++|.+.+.++....|. ....|..++
T Consensus 163 ~~~~~~~~~~~~~~lPn~--a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~----vl~~Ll~~l 234 (360)
T PF04910_consen 163 ESPLAKCYRNWLSLLPNF--AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW----VLVPLLDKL 234 (360)
T ss_pred HhHhhhhhhhhhhhCccH--HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH----HHHHHHHHh
No 367
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.40 E-value=87 Score=31.82 Aligned_cols=119 Identities=8% Similarity=-0.002 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---cCCHHHHHHH
Q 003397 648 YDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR---QGLMQEAMRM 724 (823)
Q Consensus 648 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 724 (823)
.+.-+.+++++++.+. -+...+..++..+.+..+.++..+.|+++.... .-+...|...++.... .-.+++...+
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3556778888887754 366677777888888888888888888888763 2256677777665544 2246666666
Q ss_pred HHHHHHc------CC------CCC--H---HHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 003397 725 LYEMTNR------GI------RPC--I---FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNC 768 (823)
Q Consensus 725 ~~~m~~~------~~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 768 (823)
|.+.++. +. .++ . ..+..+...+...|..+.|+.+++.+++.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6655431 11 011 1 1233344455678999999999999888654
No 368
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=77.31 E-value=75 Score=31.04 Aligned_cols=222 Identities=14% Similarity=0.199 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003397 210 DVRAYTSILHAY--SKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCST 287 (823)
Q Consensus 210 ~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 287 (823)
.+..++.+|+-| ...+--++..+++.-++ |+.++...-.+++.++.-. .| .++..+++.
T Consensus 110 ~~qvf~KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l~----------------nG-t~~~tvl~~ 170 (412)
T KOG2297|consen 110 SVQVFQKLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLLS----------------NG-TLPATVLQS 170 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHh----------------CC-CCCHHHHHH
Confidence 445666666654 22222223333333222 4555555544454444322 23 334444444
Q ss_pred HHH-HHHccCC-HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 003397 288 VIS-ACGREGL-LNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRA 365 (823)
Q Consensus 288 ll~-~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (823)
|.+ .+.+.|- ..-|.++|...... ...+.++..+-+.+.-+.-.++| +|+..+-..+...+...
T Consensus 171 L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~a 236 (412)
T KOG2297|consen 171 LLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDA 236 (412)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHh
Confidence 443 3444442 23366777665533 23467777777666655555443 66666655555555554
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHH----HHHHHHHHHHcCCCHH-
Q 003397 366 GFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLN-KMKESGCAPNVC----TYNAVLGMLGKKGRSE- 439 (823)
Q Consensus 366 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~----~~~~li~~~~~~g~~~- 439 (823)
|--+-..-.=.++.. | .-...-..|.+-..+...+++.....+ +|++.++ |+.. .|..++++---+.+-+
T Consensus 237 gL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeel 312 (412)
T KOG2297|consen 237 GLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEEL 312 (412)
T ss_pred hHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHH
Confidence 432211111101000 0 000111223333334445666655554 4555554 4543 5777766544332221
Q ss_pred HHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 003397 440 EMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVN 477 (823)
Q Consensus 440 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 477 (823)
-|...++. ..+|.-|+.+++..|+.+...
T Consensus 313 va~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 313 VAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 12223332 346888999999999887543
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.91 E-value=18 Score=28.33 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 003397 736 CIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDGYCKARK 787 (823)
Q Consensus 736 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 787 (823)
|...-..+...+...|++++|++.+-.+++..... +...-..|+..+...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455556666666666666666666666533222 23333444444444444
No 370
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=76.74 E-value=6.3 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 739 TYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 739 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777778888888888877775
No 371
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=75.81 E-value=10 Score=36.81 Aligned_cols=8 Identities=13% Similarity=-0.242 Sum_probs=3.6
Q ss_pred cCChHHHH
Q 003397 189 ESRHSIAS 196 (823)
Q Consensus 189 ~~~~~~a~ 196 (823)
.|++..|.
T Consensus 386 aGDy~~Ai 393 (498)
T KOG4849|consen 386 AGDYKGAI 393 (498)
T ss_pred cccchhHH
Confidence 44444444
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.16 E-value=18 Score=38.43 Aligned_cols=152 Identities=14% Similarity=0.046 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003397 560 PSETSFSLMLNCYAKGG-NLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSM 638 (823)
Q Consensus 560 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 638 (823)
|+..+..+++.-....- .-++.-.....+....+.|-|.+++.....+...|+...|...+.......+.-..+..-.|
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~l 648 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNL 648 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHH
Confidence 45555555544333221 11222222333344555566666665555566778888888887766544333233445556
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 003397 639 LSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFC 713 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 713 (823)
.+...+.|...+|-.++.+.+... .....++..+.++|....+++.|++.|++..+... .+.+.-+.|...-|
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 666677778888888888877754 23556777888999999999999999999887642 25555555554433
No 373
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.04 E-value=74 Score=29.87 Aligned_cols=18 Identities=6% Similarity=0.111 Sum_probs=11.6
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 003397 294 REGLLNEAKEFFAGLKLE 311 (823)
Q Consensus 294 ~~g~~~~A~~~~~~~~~~ 311 (823)
..+++.+|.++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666777777766554
No 374
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=74.90 E-value=59 Score=34.45 Aligned_cols=12 Identities=0% Similarity=0.157 Sum_probs=4.9
Q ss_pred cCChHHHHHHHh
Q 003397 189 ESRHSIASKLLD 200 (823)
Q Consensus 189 ~~~~~~a~~~~~ 200 (823)
.++|+....++.
T Consensus 375 ~~n~~LvwGIiR 386 (582)
T PF03276_consen 375 NQNFDLVWGIIR 386 (582)
T ss_pred cCCcchhhhhhh
Confidence 334444444433
No 375
>PRK09687 putative lyase; Provisional
Probab=74.26 E-value=95 Score=30.74 Aligned_cols=224 Identities=10% Similarity=0.012 Sum_probs=130.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHH
Q 003397 489 EPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNALARRGDW----KAAESVILDMQNKGFKPSETS 564 (823)
Q Consensus 489 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~ 564 (823)
.+|.......+..+...|.. ++...+..+.. ..|...-...+.++.+.|+. .++...+..+... .++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 45677777777777777753 34444444544 24667777778888888863 4677777766433 345555
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003397 565 FSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK 644 (823)
Q Consensus 565 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 644 (823)
-...+.++...+.... .+ ...+...+..... .++..+-...+.++.+
T Consensus 108 R~~A~~aLG~~~~~~~-------------~~-----------------~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~ 154 (280)
T PRK09687 108 RASAINATGHRCKKNP-------------LY-----------------SPKIVEQSQITAF---DKSTNVRFAVAFALSV 154 (280)
T ss_pred HHHHHHHHhccccccc-------------cc-----------------chHHHHHHHHHhh---CCCHHHHHHHHHHHhc
Confidence 5555655554432110 00 0111111211111 2355555666677777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 003397 645 NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG-KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMR 723 (823)
Q Consensus 645 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 723 (823)
.++ ++|+..+-.+.+. +|...-...+.++++.+ +...+...+..+.. .++..+-...+.++.+.|+ ..|+.
T Consensus 155 ~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~ 226 (280)
T PRK09687 155 IND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLS 226 (280)
T ss_pred cCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHH
Confidence 765 5666776666652 34444444555555543 24456666666664 4466667777778888777 56777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 724 MLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 724 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.+-+..+.+ + .....+.++...|. .+|+..+..+.+
T Consensus 227 ~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~ 262 (280)
T PRK09687 227 VLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY 262 (280)
T ss_pred HHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh
Confidence 777766642 2 23456677777777 478888888776
No 376
>PRK10941 hypothetical protein; Provisional
Probab=74.09 E-value=36 Score=33.28 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH-HHHHHHHHHH
Q 003397 740 YNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND-ESVKRLTFRV 817 (823)
Q Consensus 740 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 817 (823)
.+.+-.+|.+.++++.|.+..+.++...+. +..-+.--+-.|.+-|.+..|..-++.-.+..|+.+. ...+..+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 355666788889999999999988874332 5666777777888889999999888888888877653 2333333333
No 377
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.76 E-value=1.6e+02 Score=33.17 Aligned_cols=224 Identities=9% Similarity=0.091 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHCCCCCCHH--
Q 003397 212 RAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGR------SWDRILGLLDEMRSRGLEFDEF-- 283 (823)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~------~~~~a~~~~~~m~~~~~~~~~~-- 283 (823)
.+|- +|--|.|+|.+++|.++.....+. +......|-..+..|....+ .-++...-|++........|.+
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3443 667778999999999999655543 45566677888888876522 1246666676666553322443
Q ss_pred -HHHHHHHHHHccCC-------HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHH
Q 003397 284 -TCSTVISACGREGL-------LNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTY 355 (823)
Q Consensus 284 -~~~~ll~~~~~~g~-------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 355 (823)
+|.++..+=..... .|+-+.+--.+.......+...+ ..-.+++..+.+.+.-+..+.++ ...
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~--------e~~~L~~LQ~~i~~~Ge~~F~~~-~~p 261 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY--------ERYTLEDLQKLILKYGESHFNAG-SNP 261 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS------------HHHHHHHHHHH-GGGCTT-----
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc--------ccccHHHHHHHHHHhchhhcccc-hhH
Confidence 44444211110111 11111111111111111001000 00012222222222222222221 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHc
Q 003397 356 NEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLLNKMKESGC-APNVCTYNAVLGMLGK 434 (823)
Q Consensus 356 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 434 (823)
-.....+.-.|++|.|++.+-+ ..+...|.+.+...+..|.-.+ .....-..+..... .+...-+..||..|++
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~---~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLR---VSDSSSAPLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCC---CCCccccceeeecCCCCCCcCHHHHHHHHHH
Confidence 2234566778999999998877 2223345555555554443222 22111133322110 1111456777877776
Q ss_pred ---CCCHHHHHHHHHHhhhC
Q 003397 435 ---KGRSEEMMKILCDMKSS 451 (823)
Q Consensus 435 ---~g~~~~a~~~~~~~~~~ 451 (823)
..+..+|.+.|-.+...
T Consensus 337 ~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS
T ss_pred HHhccCHHHHHHHHHHHHHc
Confidence 45678888888777654
No 378
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=72.86 E-value=99 Score=30.28 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHccCChhHH
Q 003397 563 TSFSLMLNCYAKGGNLKGI 581 (823)
Q Consensus 563 ~~~~~ll~~~~~~~~~~~a 581 (823)
.+|..++.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4577888888888876643
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.86 E-value=44 Score=30.90 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 003397 669 TYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNR--GIRPCIFTYNTFVSG 746 (823)
Q Consensus 669 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~ 746 (823)
|.+..+..+.+.+.+.+|+...++-++.. +-|...-..+++.||-.|++++|..-++-..+. ...+...+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455677788899999999999887763 346677788999999999999999988877662 233345667777754
No 380
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.84 E-value=1.3 Score=38.54 Aligned_cols=86 Identities=7% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 003397 672 NLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG 751 (823)
Q Consensus 672 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 751 (823)
.++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35666777778888888888888765555677788888888888776777776662 11223345667777788
Q ss_pred ChhHHHHHHHHHH
Q 003397 752 MFTEIDEVIKHMF 764 (823)
Q Consensus 752 ~~~~A~~~~~~~~ 764 (823)
.+++|..++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8888877777654
No 381
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.80 E-value=78 Score=29.86 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=81.0
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHH
Q 003397 642 CAKNSMYDRANEMLHLILESGMQPNLVTY-NNLMDMYARAGKCWKAEEILKGILKSGGTPDLV-SYNTVIKGFCRQGLMQ 719 (823)
Q Consensus 642 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 719 (823)
|.....++.|+..|.+.+.. .|+..+| ..=+..+.+.++++.+..--.+.++ +.||.+ ....+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 66778899999988888874 5677554 4556667788899998888777776 466664 3344566777888899
Q ss_pred HHHHHHHHHHH----cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 003397 720 EAMRMLYEMTN----RGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHM 763 (823)
Q Consensus 720 ~A~~~~~~m~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 763 (823)
+|+..+++..+ +.+.+-..++..|..+=-+.=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999998854 345555666777766544444444444444443
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.70 E-value=1.3e+02 Score=31.77 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=54.2
Q ss_pred CCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHHHHHHHHHHHc-CCCCCHHHH
Q 003397 665 PNLVTY-NNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR--QGLMQEAMRMLYEMTNR-GIRPCIFTY 740 (823)
Q Consensus 665 ~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~m~~~-~~~p~~~~~ 740 (823)
++..++ +.+++.+.+.|-..+|..++..+... .+++...|..+|..-.. .-++.-+..+|+.|... | -|...|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 344443 56677777788888888888888765 34555555555532211 11255555566665542 3 445555
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHH
Q 003397 741 NTFVSGYAGQGMFTEIDEVIKHMF 764 (823)
Q Consensus 741 ~~l~~~~~~~g~~~~A~~~~~~~~ 764 (823)
...+.--...|..+.+-.++.++.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHH
Confidence 555444445555555555554444
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.67 E-value=13 Score=27.87 Aligned_cols=19 Identities=16% Similarity=0.245 Sum_probs=8.5
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 003397 705 YNTVIKGFCRQGLMQEAMR 723 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~ 723 (823)
+..++.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 384
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.43 E-value=1.4e+02 Score=31.57 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHH-hcCCHHHHHHH
Q 003397 155 RALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYS-KAGKYEKAISL 233 (823)
Q Consensus 155 ~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~ 233 (823)
.-+.+|+.+... +..|...|...+..+.+.+.+.+.-.+|..|.... +.++..|..-..... .+.+++.|..+
T Consensus 89 rIv~lyr~at~r-----f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 89 RIVFLYRRATNR-----FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHH
Confidence 344555555543 22477777777777777776777777777766532 223333333333322 22337777777
Q ss_pred HHHHHHc
Q 003397 234 FEKVKEM 240 (823)
Q Consensus 234 ~~~m~~~ 240 (823)
|.+-.+.
T Consensus 163 flrgLR~ 169 (568)
T KOG2396|consen 163 FLRGLRF 169 (568)
T ss_pred HHHHhhc
Confidence 7766654
No 385
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.36 E-value=5.9 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=11.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 003397 743 FVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
+..++.+.|++++|.+.++++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455555555555555544
No 386
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=71.07 E-value=82 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003397 708 VIKGFCRQGLMQEAMRMLYEMT 729 (823)
Q Consensus 708 l~~~~~~~g~~~~A~~~~~~m~ 729 (823)
-|......|++++|++...++.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3445566666666666665543
No 387
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.28 E-value=2.3e+02 Score=33.36 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003397 197 KLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVK 238 (823)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 238 (823)
.+|+.+.+..+.+...-+-.-|..+.+.+++++|.++...|.
T Consensus 983 ~L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 983 ILFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 345555544455555555555666777788888888877776
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.28 E-value=1.2e+02 Score=29.54 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=26.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003397 465 TMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDM 518 (823)
Q Consensus 465 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 518 (823)
..|..+|.+.+|.++.+..+..+ +.+...+-.|+..+...|+--.+.+-++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34555555555555555554443 344445555555555555544444444443
No 389
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.25 E-value=1.1e+02 Score=29.17 Aligned_cols=275 Identities=15% Similarity=0.166 Sum_probs=134.7
Q ss_pred CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 003397 487 GFEPDRDTFNTLISA-YGRCGSGVDATKMFEDMMKTGFTPC---VTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSE 562 (823)
Q Consensus 487 ~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 562 (823)
+-+||...=+..-.. -.+..+.++|+.-|++.++...... -.....++..+.+.|++++....+.+|..-
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY------ 94 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY------ 94 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH------
Confidence 335555443332221 1234577888888888776432222 234455677778888888888888777642
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHH----HHHCCC-CCCHHHHHH
Q 003397 563 TSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQE----LQKHGY-KPDLVIFNS 637 (823)
Q Consensus 563 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~ 637 (823)
+.......- +....+.++.......+.+-....|+. +.+..- +.--.+-.-
T Consensus 95 ------IkSAVTrNy------------------SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 95 ------IKSAVTRNY------------------SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred ------HHHHHhccc------------------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 111000000 111222222222223333333333332 222110 001113345
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCC----CCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCChhHH
Q 003397 638 MLSICAKNSMYDRANEMLHLILESGM----QPN-------LVTYNNLMDMYARAGKCWKAEEILKGILKSG-GTPDLVSY 705 (823)
Q Consensus 638 l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 705 (823)
+...|...+.+.+-.++++++...-. .-| ..+|..=+.+|..+++-.+-..+|++.+... --|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 66777788888888888888775411 112 2356666777888888888888888776321 23344333
Q ss_pred HHHHH-----HHHhcCCHHHHHHHHHH-HHH---cCCCCCHHH---HHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCC
Q 003397 706 NTVIK-----GFCRQGLMQEAMRMLYE-MTN---RGIRPCIFT---YNTFVSGYAGQGMFTEIDEVIKHMFQH--NCKPN 771 (823)
Q Consensus 706 ~~l~~-----~~~~~g~~~~A~~~~~~-m~~---~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~ 771 (823)
. .|+ ...+.|.+++|-.-|-+ ... .| .|...+ |..|++.+.++| +.-|+.-... .-.|.
T Consensus 231 G-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdPE 303 (440)
T KOG1464|consen 231 G-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSG-----INPFDSQEAKPYKNDPE 303 (440)
T ss_pred h-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcC-----CCCCcccccCCCCCCHH
Confidence 2 333 34567888887544433 332 23 333333 222332222221 1111111111 11233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 772 ELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 772 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
......|+.+|-. ++..+..++++.-.
T Consensus 304 IlAMTnlv~aYQ~-NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 304 ILAMTNLVAAYQN-NDIIEFERILKSNR 330 (440)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHhhh
Confidence 4556778877754 46666666665444
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.18 E-value=3.7e+02 Score=35.00 Aligned_cols=63 Identities=6% Similarity=-0.087 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 737 IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 737 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
..+|...++.+..+|.++.|...+-++.+.+ . ...+-..+..+...|+-..|+.++++..++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4578888888889999999999888887755 2 3445567788889999999999999888554
No 391
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.12 E-value=72 Score=27.05 Aligned_cols=23 Identities=4% Similarity=0.121 Sum_probs=11.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 003397 743 FVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
|.-++.+.+++++++++.+.+++
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344455555555555555544
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.78 E-value=12 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=13.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 003397 743 FVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 743 l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
|..+|...|+.+.|.+++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666666554
No 393
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.74 E-value=2.3e+02 Score=32.47 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=66.0
Q ss_pred HhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH---------------cCCChhHHHHHHHHHHhCCCCCC
Q 003397 713 CRQGLMQEAMRMLYEMTNR------GIRPCIFTYNTFVSGYA---------------GQGMFTEIDEVIKHMFQHNCKPN 771 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~p~ 771 (823)
...|++.+|++.|+..+-. .-.-+..-...++..|+ ..++.+.+.++..-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4578999999999987742 01112222333333331 23445555555555555667774
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 003397 772 --ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLT 814 (823)
Q Consensus 772 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 814 (823)
.-+...-+..+.+.+++..|..+.+++++..|..+.....+.+
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki 1126 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKI 1126 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 3445677889999999999999999999999987655444433
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.33 E-value=29 Score=32.09 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 756 IDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 756 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
.++..++..+ ..|+...|..++.++...|+.++|.++.+++....|.
T Consensus 130 ~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 130 YIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3344444444 4678888888888888888888888888888888883
No 395
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.83 E-value=86 Score=27.19 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=9.4
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003397 712 FCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 712 ~~~~g~~~~A~~~~~~m~~ 730 (823)
+...|++++|+.+|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444555555555555444
No 396
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.23 E-value=88 Score=27.12 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHcCCChhHHHHHHHHHHhCC
Q 003397 713 CRQGLMQEAMRMLYEMTNRGIRPCIFTYN-TFVSGYAGQGMFTEIDEVIKHMFQHN 767 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 767 (823)
...++.+++..++..|.- +.|+..-.. .-...+...|+|++|+.+++++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347899999999999887 566643322 22445788999999999999998754
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.60 E-value=16 Score=27.44 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=25.9
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 003397 749 GQGMFTEIDEVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKEAMDFL 795 (823)
Q Consensus 749 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 795 (823)
.....++|+..+++.++.-..+. ..+.-.|+.+|+..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666665333321 233455566666666666666554
No 398
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.57 E-value=56 Score=25.91 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=6.4
Q ss_pred HHcCCHHHHHHHHHH
Q 003397 363 VRAGFYEEGAALIDT 377 (823)
Q Consensus 363 ~~~g~~~~a~~~~~~ 377 (823)
...|+|++|..+.+.
T Consensus 50 mNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 50 MNRGDYQSALQLGNK 64 (115)
T ss_pred HccchHHHHHHhcCC
Confidence 334444444444433
No 399
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.46 E-value=1.2e+02 Score=28.49 Aligned_cols=89 Identities=20% Similarity=0.131 Sum_probs=41.9
Q ss_pred HccCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHHcCCHh-------HHHHHHHHHHHcCCCC----C-hhH
Q 003397 643 AKNSMYDRANEMLHLILE----SGMQPN--LVTYNNLMDMYARAGKCW-------KAEEILKGILKSGGTP----D-LVS 704 (823)
Q Consensus 643 ~~~~~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~----~-~~~ 704 (823)
.....+++|++.|..++- .+.++. ...+..+.+.|...|+-+ .|.+.|.+..+....| + ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 344566667666655442 122233 233445566666666633 3444444444322111 1 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003397 705 YNTVIKGFCRQGLMQEAMRMLYEMTNR 731 (823)
Q Consensus 705 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 731 (823)
.-.++....+.|+.++|.+.|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 223344555566666666666666553
No 400
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.31 E-value=12 Score=38.73 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHH
Q 003397 713 CRQGLMQEAMRMLYEMTNRGIRPCIFTY-NTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARKYKE 790 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 790 (823)
.+.+.++.|+.++.++++ +.||...| ..-..++.+.+++..|+.=+.++++.. |. ...|..-+.++.+.|++.+
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 344455555555555555 34443333 222245555555555555555555432 21 2333333344444455555
Q ss_pred HHHHHHHHhhcCCCC
Q 003397 791 AMDFLSKIKERDDSF 805 (823)
Q Consensus 791 A~~~~~~~~~~~~~~ 805 (823)
|+..++......|+.
T Consensus 91 A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPND 105 (476)
T ss_pred HHHHHHHhhhcCcCc
Confidence 555555555555554
No 401
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=65.26 E-value=81 Score=31.41 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=26.9
Q ss_pred HHHHcCCHhHHHHHHHHHHHc---CCCCChhHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 676 MYARAGKCWKAEEILKGILKS---GGTPDLVSYN--TVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 676 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
..-+.++.++|+++++++.+. .-.|+.+.|. .++..+...|+..++.+.+.+..+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334455666666666666532 1123333332 233444455566666555555444
No 402
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.08 E-value=1.5e+02 Score=29.47 Aligned_cols=118 Identities=10% Similarity=-0.055 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 003397 646 SMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG-------KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR---- 714 (823)
Q Consensus 646 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 714 (823)
.+..+|...|+.+.+.|..+.......+...|..-+ +...|...|.++...+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 367777777777777764322223444444444321 2336778888777665 44444455544432
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---------------ChhHHHHHHHHHHhCCCCC
Q 003397 715 QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG---------------MFTEIDEVIKHMFQHNCKP 770 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~p 770 (823)
..+.++|...|++..+.|. ......+. .+...| +...|...+......+...
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 3478888888888888765 22222222 444444 6666677777776655543
No 403
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=64.37 E-value=15 Score=35.35 Aligned_cols=6 Identities=50% Similarity=0.816 Sum_probs=2.3
Q ss_pred HHHHHH
Q 003397 269 LLDEMR 274 (823)
Q Consensus 269 ~~~~m~ 274 (823)
+-++|+
T Consensus 301 ~AkeMR 306 (407)
T PF04625_consen 301 MAKEMR 306 (407)
T ss_pred HHHHHH
Confidence 333343
No 404
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=64.02 E-value=1.7e+02 Score=29.69 Aligned_cols=118 Identities=9% Similarity=0.019 Sum_probs=81.9
Q ss_pred HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc---CCChhHHHH
Q 003397 683 CWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRP-CIFTYNTFVSGYAG---QGMFTEIDE 758 (823)
Q Consensus 683 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A~~ 758 (823)
.+.-+.+++++++.+ +-+...+..++..+.+.-+.++..+.|++++.. .| +...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 456677888888773 346677778888888888999999999999985 33 46667777765543 335677777
Q ss_pred HHHHHHh------CCC------CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 003397 759 VIKHMFQ------HNC------KPN-----ELTYKIVVDGYCKARKYKEAMDFLSKIKERDD 803 (823)
Q Consensus 759 ~~~~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 803 (823)
+|.+.++ .+. .++ ..++..+...+..+|-.+.|...++.+.+.+-
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 7766653 121 011 22344455556789999999999999988653
No 405
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.69 E-value=29 Score=38.71 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=5.2
Q ss_pred HHHHHHHHhccCC
Q 003397 179 IQLMVRILGKESR 191 (823)
Q Consensus 179 ~~~l~~~~~~~~~ 191 (823)
|+.++..+.+.|+
T Consensus 509 w~~~~~~~~~~~~ 521 (620)
T PRK14954 509 WNQFLEHLLKKGQ 521 (620)
T ss_pred HHHHHHHHHHccc
Confidence 3333444444333
No 406
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.33 E-value=1.5e+02 Score=28.81 Aligned_cols=27 Identities=4% Similarity=0.233 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003397 387 AVTYTTLIDAYGRAGKVNKALRLLNKM 413 (823)
Q Consensus 387 ~~~~~~li~~~~~~g~~~~A~~~~~~~ 413 (823)
...+..+.+.|++-++.+.+.++.++.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344555556666666666655555443
No 407
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.22 E-value=1.4e+02 Score=28.54 Aligned_cols=213 Identities=11% Similarity=0.114 Sum_probs=115.8
Q ss_pred CCCCCChhHHHHHHHH-HHccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC
Q 003397 451 SGCSPNRITWNTMLTM-CGNKGLDKYVNQVFREMKSCGFE---PDRDTFNTLISAYGRCGSGVDATKMFEDMMKT---GF 523 (823)
Q Consensus 451 ~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 523 (823)
.+-.||+..-|..-.. -.+....++|..-|++..+..-+ ........+|..+.+.+++++....+.+++.- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3456676554443322 23445789999999988765322 23345567788899999999999988888631 11
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHH
Q 003397 524 --TPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLR 601 (823)
Q Consensus 524 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 601 (823)
.-+....|++++....+.+.+...+.++.-.+ ++.... ..+.. ...-.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~---------------ALkdAK-------------NeRLW--FKTNt 149 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLD---------------ALKDAK-------------NERLW--FKTNT 149 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---------------HHHhhh-------------cceee--eeccc
Confidence 12334455666555545554444443332221 111100 00000 00112
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHH
Q 003397 602 TLILVNFKCRALQGMERAFQELQKHGY-----------KPDLVIFNSMLSICAKNSMYDRANEMLHLILESG-MQPNLVT 669 (823)
Q Consensus 602 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 669 (823)
.+...|+..+.+.+..++++++.+.-. ..-..+|..-|++|....+-.+-..++++.+... --|...+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 344455556666666666666543211 1123467777888888888888888888776421 1233333
Q ss_pred HHHHHH-----HHHHcCCHhHHHHHHHHHH
Q 003397 670 YNNLMD-----MYARAGKCWKAEEILKGIL 694 (823)
Q Consensus 670 ~~~l~~-----~~~~~g~~~~A~~~~~~~~ 694 (823)
. .+++ +..+.|++++|-.-|-+.-
T Consensus 230 m-GvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 230 M-GVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred H-hHHHHcCCccccccchHHHHHhHHHHHH
Confidence 3 2333 3346788888765544443
No 408
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.20 E-value=2.1e+02 Score=30.37 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=8.1
Q ss_pred HHHccCCHHHHHHHHH
Q 003397 291 ACGREGLLNEAKEFFA 306 (823)
Q Consensus 291 ~~~~~g~~~~A~~~~~ 306 (823)
..+..|+.+.+..+++
T Consensus 74 ~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 74 DAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 3445566655444443
No 409
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.99 E-value=62 Score=37.59 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=23.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003397 269 LLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLK 309 (823)
Q Consensus 269 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 309 (823)
+|..+.+..+.|...-+..-|..+.+.+++++|.++..+|.
T Consensus 984 L~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 984 LFDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 44444444455555444444455666677777777777666
No 410
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.27 E-value=2.8e+02 Score=31.50 Aligned_cols=117 Identities=5% Similarity=-0.045 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHhhhCC-CCCCh--hHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003397 435 KGRSEEMMKILCDMKSSG-CSPNR--ITWNTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDA 511 (823)
Q Consensus 435 ~g~~~~a~~~~~~~~~~~-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 511 (823)
..+.+.|..++....... ..+.. ..+..+.......+...++...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 344577777777664332 22111 222233222223222445555555433221 2334444445555567777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003397 512 TKMFEDMMKTGFTPCVTTYNAFLNALARRGDWKAAESVILDMQ 554 (823)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 554 (823)
...+..|....- -...-..=+.+++...|+.++|..+|..+.
T Consensus 332 ~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777766644221 122333334556566777777777777763
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.02 E-value=57 Score=27.53 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003397 754 TEIDEVIKHMFQHNCKPN-ELTYKIVVDGYCKARKYKEAMDFLSKI 798 (823)
Q Consensus 754 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 798 (823)
+++.++|+.|...|+--. ..-|...+..+...|++++|.++++..
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 377788888877666543 555677777788888888888877654
No 412
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=61.98 E-value=1.1e+02 Score=29.79 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-----cCCHHHHHHHH
Q 003397 674 MDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR-----QGLMQEAMRML 725 (823)
Q Consensus 674 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~ 725 (823)
|-.|.+.|+...+.++-....+..-.-+...|..++..|.. .|.+++|.++.
T Consensus 125 ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33455555555555555554433222222334444433332 35555555443
No 413
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.89 E-value=1.7e+02 Score=29.04 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHhhhCC
Q 003397 389 TYTTLIDAYGRAGKVNKALRLLNKMKE----SGCAPNVCTYNAVLG-MLGKKGRSEEMMKILCDMKSSG 452 (823)
Q Consensus 389 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~ 452 (823)
.+......||+-||-+.|++.+++..+ .|.+.|+..+..-+. .|....-+.+-++..+.+.+.|
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 344455666666666666666655433 344445444433222 2222222344444444444443
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.91 E-value=52 Score=27.30 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003397 684 WKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 684 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 730 (823)
.+..+.++.....++.|++.....-+.++.+-+++..|.++|+-++.
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555555555556666666666666666666666666665554
No 415
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.90 E-value=3.2e+02 Score=31.44 Aligned_cols=159 Identities=16% Similarity=0.117 Sum_probs=96.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003397 321 NSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRA 400 (823)
Q Consensus 321 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 400 (823)
.++|..+.+.|-.+-|+...+. ..+- .......|+++.|++.-.++- |..+|..|......+
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD---------~~tR---F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKD---------ERTR---FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecC---------cchh---eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHh
Confidence 4566666677776666665432 2221 223456788888877665532 667889999998999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 003397 401 GKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVF 480 (823)
Q Consensus 401 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 480 (823)
|+.+-|+..|++.+. |+.|--.|.-.|+.++-.++.+....++ |..+ ... ...-.|+.++-.+++
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~-~~q--nalYl~dv~ervkIl 750 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG-QFQ--NALYLGDVKERVKIL 750 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH-HHH--HHHHhccHHHHHHHH
Confidence 999999888887664 3445556777888888877777665431 2211 111 122356666666655
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003397 481 REMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKT 521 (823)
Q Consensus 481 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 521 (823)
... |..| ..|. .....|.-++|.++.++....
T Consensus 751 ~n~---g~~~--layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 751 ENG---GQLP--LAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred Hhc---Cccc--HHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 443 2222 1221 122457777888888887664
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.75 E-value=57 Score=25.74 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=24.6
Q ss_pred HhcCCHHHHHHHHHHHHHc---CCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 713 CRQGLMQEAMRMLYEMTNR---GIRPC-----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~---~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
.+.|++.+|.+.+.+..+. ..... ......+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556666665555554432 11111 11122233444455666666665555553
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.57 E-value=17 Score=33.68 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=25.0
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 003397 749 GQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSF 805 (823)
Q Consensus 749 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 805 (823)
+.|+.+.|.+++.++.+.-.+ ....|..+...-.++|+++.|.+.+++.++.+|++
T Consensus 7 ~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344444444444444432111 23344444444444455555555555444444443
No 418
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.51 E-value=2.4e+02 Score=29.87 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=72.4
Q ss_pred HHHHHcCCHhHHHHHHHHHH---HcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH--
Q 003397 675 DMYARAGKCWKAEEILKGIL---KSGGTPD-----LVSYNTVIKGFCRQGLMQEAMRMLYEMTN-------RGIRPCI-- 737 (823)
Q Consensus 675 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~-- 737 (823)
..+...|++.+|.+++...- ..|.... -..||.|.-.+.+.|.+.-+..+|.+.+. .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788888888876543 1121111 23356676666777777777777776663 3655532
Q ss_pred ---------HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003397 738 ---------FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA 785 (823)
Q Consensus 738 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 785 (823)
.+|| ..-.|.+.|+.-.|.+.|.+.++. +.-|+..|-.|+.+|..+
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2333 344678899999999999988864 455888999999988764
No 419
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=59.02 E-value=1.4e+02 Score=27.08 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003397 496 NTLISAYGRCGSGVDATKMFEDMMKTGF--------------TPCVTTYNAFLNALARRGDWKAAESVIL 551 (823)
Q Consensus 496 ~~li~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 551 (823)
-+++-.|.+..++.++.++++.|.+..+ .+.-.+-|.....+.+.|..+.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4556667777788888888877765321 1222344555666677777777776665
No 420
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.79 E-value=1.8e+02 Score=28.29 Aligned_cols=97 Identities=8% Similarity=0.068 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----CCCCCChhHHHHHH-HHHHccCCHHHHHHHHHHHHHCCCCCCH---
Q 003397 421 NVCTYNAVLGMLGKKGRSEEMMKILCDMKS----SGCSPNRITWNTML-TMCGNKGLDKYVNQVFREMKSCGFEPDR--- 492 (823)
Q Consensus 421 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 492 (823)
-...+..+...|++.++.+.+.+.+++... .|.+.|+.....-+ -.|....-.++-.+..+.|.+.|...+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345677788888888888888877766543 35554443222211 1233334455566666666666643322
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003397 493 -DTFNTLISAYGRCGSGVDATKMFEDMM 519 (823)
Q Consensus 493 -~~~~~li~~~~~~~~~~~a~~~~~~~~ 519 (823)
.+|..+- +....++.+|-.++-+.+
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 1222221 112235555555555544
No 421
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.78 E-value=29 Score=38.19 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.5
Q ss_pred CCCCCC
Q 003397 3 GTIFPN 8 (823)
Q Consensus 3 ~~~~~~ 8 (823)
|-.+|+
T Consensus 84 G~~lP~ 89 (1118)
T KOG1029|consen 84 GIQLPP 89 (1118)
T ss_pred CCcCCC
Confidence 434444
No 422
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.68 E-value=3.6e+02 Score=31.58 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=28.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003397 536 ALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAK 574 (823)
Q Consensus 536 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 574 (823)
.|+.....+.+..+++.+....-..+....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 466777888888888888776555566666777766654
No 423
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.00 E-value=1.3e+02 Score=33.40 Aligned_cols=183 Identities=12% Similarity=0.182 Sum_probs=93.9
Q ss_pred HHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHHcCCH
Q 003397 617 ERAFQELQKHGYKPDL---VIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVT----------YNNLMDMYARAGKC 683 (823)
Q Consensus 617 ~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~ 683 (823)
...+.+|...--.|++ .+...++-.|....+++..+++.+.+.+. ||..- |.--++---+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 3445566655334443 35555666677788888888888877763 32211 11112222245778
Q ss_pred hHHHHHHHHHHHcC--CCCChhHHHHHH-------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-h
Q 003397 684 WKAEEILKGILKSG--GTPDLVSYNTVI-------KGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGM-F 753 (823)
Q Consensus 684 ~~A~~~~~~~~~~~--~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~ 753 (823)
++|+...-.+.++. +.||......-| ..|...+..+.|++.|++.-+ +.|....=..+...+...|. +
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhc
Confidence 88888777776543 345543322111 122334456778899998877 56765543222222333332 2
Q ss_pred hHHHHH------HHHHH-hCCCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 754 TEIDEV------IKHMF-QHNCKPNELTYKI---VVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 754 ~~A~~~------~~~~~-~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
+...++ +..++ +.|.--+...|.- ...+-.-++++.+|....+.|.++.|.
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 222221 11111 1222112222221 223334467888888888888877765
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.56 E-value=63 Score=26.35 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 740 YNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 740 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
|..|+..|...|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555543
No 425
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.42 E-value=2.2e+02 Score=28.42 Aligned_cols=32 Identities=19% Similarity=0.179 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Q 003397 245 TLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRG 277 (823)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~ 277 (823)
....+..++.+|+...- .++++..+++-.+.|
T Consensus 298 ~~~l~kq~l~~~A~d~a-ieD~i~~L~~~~r~G 329 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLA-IEDAIYSLGKSLRDG 329 (365)
T ss_pred cchHHHHHHHhhhhhhH-HHHHHHHHHHHHhcC
Confidence 33444555555554322 344444555544444
No 426
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.34 E-value=65 Score=31.39 Aligned_cols=58 Identities=10% Similarity=-0.037 Sum_probs=30.6
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCH
Q 003397 749 GQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFND 807 (823)
Q Consensus 749 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 807 (823)
+.|+.|+|.++|+.+....+. +..+...++...-..++.-+|-.+|-+++...|.+++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 445556666666655553221 3444444444444455555566666666666665544
No 427
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.99 E-value=69 Score=25.24 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=10.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003397 710 KGFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 710 ~~~~~~g~~~~A~~~~~~m~~ 730 (823)
......|+.++|+..+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334444555555555555443
No 428
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=54.72 E-value=1e+02 Score=29.43 Aligned_cols=7 Identities=0% Similarity=0.510 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003397 212 RAYTSIL 218 (823)
Q Consensus 212 ~~~~~li 218 (823)
.+|..++
T Consensus 236 qiw~~vv 242 (297)
T PF07174_consen 236 QIWAGVV 242 (297)
T ss_pred ceEEEee
Confidence 3444333
No 429
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.94 E-value=1.8e+02 Score=29.41 Aligned_cols=171 Identities=10% Similarity=-0.038 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 003397 648 YDRANEMLHLILESGM----QPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMR 723 (823)
Q Consensus 648 ~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 723 (823)
.++|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH-HcCCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 724 MLYEMTNRGIRPCIFTYNTFVSGY-AGQGMFTEIDEVIKHMFQ---HNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 724 ~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
+++.....+..+.......+.... ...--.+.+.+++..=.+ .....+......++..+......++-.+-+++..
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~ 302 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFF 302 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHH
Q ss_pred hcCCCCCHHHHHHHHHHHHHHh
Q 003397 800 ERDDSFNDESVKRLTFRVREIL 821 (823)
Q Consensus 800 ~~~~~~~~~~~~~l~~~~~~~~ 821 (823)
+..++.....-..+.+.+..+.
T Consensus 303 ~~~~~~~~~~~r~l~q~~e~Ir 324 (324)
T PF11838_consen 303 EDKPKPPPGLRRALAQSLETIR 324 (324)
T ss_dssp HHHCTCCCTTTHHCHHHHHHHH
T ss_pred hhCcCCChHHHHHHHHHHHhcC
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.88 E-value=73 Score=28.63 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred hHHHHHHHhhcccCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHH
Q 003397 192 HSIASKLLDLIPLEKYSLDV-------RAYTSILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWD 264 (823)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 264 (823)
++.|..+|+.+.+.-..+.. -+-...+..|.+.|.+++|.+++++... .++......-|....+..+.+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccccc
Q ss_pred HHHHHH
Q 003397 265 RILGLL 270 (823)
Q Consensus 265 ~a~~~~ 270 (823)
..++-|
T Consensus 162 ~~lqnF 167 (200)
T cd00280 162 PVLQNF 167 (200)
T ss_pred HHHHhc
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.83 E-value=2e+02 Score=27.19 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=10.1
Q ss_pred CChhHHHHHHHHHHhCCCCC
Q 003397 751 GMFTEIDEVIKHMFQHNCKP 770 (823)
Q Consensus 751 g~~~~A~~~~~~~~~~~~~p 770 (823)
+++++|.+++.++.+.|+.|
T Consensus 252 ~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 252 RNIDEALKILAELWKLGYSP 271 (333)
T ss_pred ccHHHHHHHHHHHHHcCCCH
Confidence 34555555555555555544
No 432
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=53.78 E-value=3e+02 Score=31.31 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=55.9
Q ss_pred HhHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCC----------CHHHHHHHHHHHH
Q 003397 683 CWKAEEILKGIL-KSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG---IRP----------CIFTYNTFVSGYA 748 (823)
Q Consensus 683 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p----------~~~~~~~l~~~~~ 748 (823)
.++....+.++. +.|+..+......++... .|+...|+.+++++...| +.. +......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 345555565554 446666777666666543 699999999999887643 111 1222334444444
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC
Q 003397 749 GQGMFTEIDEVIKHMFQHNCKPN 771 (823)
Q Consensus 749 ~~g~~~~A~~~~~~~~~~~~~p~ 771 (823)
.++...++.+++++.+.|+.+.
T Consensus 258 -~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 -NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -cCCHHHHHHHHHHHHHhCCCHH
Confidence 4788899999999998887653
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.56 E-value=62 Score=23.13 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 753 FTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 753 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
.++....++..+. |..-.-.++.+|...|++++|.++++++.+
T Consensus 9 ~~~~~~~lR~~RH-----D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 9 LEELIDSLRAQRH-----DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
No 434
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=53.41 E-value=2.8e+02 Score=28.70 Aligned_cols=139 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHH--------HHHhcCCHHHHHHHHHHHHH-cCCCCC
Q 003397 666 NLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIK--------GFCRQGLMQEAMRMLYEMTN-RGIRPC 736 (823)
Q Consensus 666 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~~m~~-~~~~p~ 736 (823)
+...+..++-....++++.+|.++-+.....-..-|..++..+.. .|-..|+...-..++..... ..+.-|
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred HHH----HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 003397 737 IFT----YNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPN---ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 737 ~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 804 (823)
..+ .|.|++.|...+.++.|.++..+..--.-..| ..-..-++..-.-+++++.|.+.+-.+..+.|.
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
No 435
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=53.36 E-value=4.1e+02 Score=30.65 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 003397 648 YDRANEMLHLILE-SGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKS 696 (823)
Q Consensus 648 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 696 (823)
.++..+.++.+.+ .|+..+......+... ..|++..|+.++++....
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~ 227 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHh
Confidence 4556666666554 4665566655554443 468899999998876643
No 436
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=53.24 E-value=51 Score=35.90 Aligned_cols=7 Identities=14% Similarity=0.055 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 003397 754 TEIDEVI 760 (823)
Q Consensus 754 ~~A~~~~ 760 (823)
++|...+
T Consensus 920 ~eAr~A~ 926 (944)
T KOG4307|consen 920 EEARRAS 926 (944)
T ss_pred HHHHhhh
Confidence 3333333
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.90 E-value=1.1e+02 Score=23.72 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=15.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCH
Q 003397 400 AGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRS 438 (823)
Q Consensus 400 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 438 (823)
.|+.+.|.+++..+. .| ...|..++.++...|.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHH 82 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCch
Confidence 344555555555444 31 22344444444444443
No 438
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.79 E-value=3.2e+02 Score=28.96 Aligned_cols=83 Identities=8% Similarity=-0.052 Sum_probs=35.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhc
Q 003397 323 LLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVT--YTTLIDAYGRA 400 (823)
Q Consensus 323 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~ 400 (823)
.+...++.|+.+.+..+++.-....-..+... .+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~ 145 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMM 145 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Confidence 45556667777665555432111000001111 12333444556553 4444455555443321 12234444566
Q ss_pred CCHHHHHHHH
Q 003397 401 GKVNKALRLL 410 (823)
Q Consensus 401 g~~~~A~~~~ 410 (823)
|+.+.+..++
T Consensus 146 ~~~~~v~~Ll 155 (413)
T PHA02875 146 GDIKGIELLI 155 (413)
T ss_pred CCHHHHHHHH
Confidence 7665444433
No 439
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=51.59 E-value=2.5e+02 Score=27.65 Aligned_cols=63 Identities=6% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhC-CCCCChhHHHHHHHHHHccCCHHHHHHHH
Q 003397 418 CAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSS-GCSPNRITWNTMLTMCGNKGLDKYVNQVF 480 (823)
Q Consensus 418 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 480 (823)
..++..+...++..+++.+++.+-.++++..... +..-|...|..+|+...+.|+..-..++.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3445555666666666666666666666655543 34445566666666666666655444433
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.53 E-value=1.1e+02 Score=23.62 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHH
Q 003397 406 ALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVN 477 (823)
Q Consensus 406 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 477 (823)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. + ....|..++.++...|..+.|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhhh
Confidence 34555666665533 33333333332335567777777777776 4 3345666666666666555443
No 441
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=51.34 E-value=3e+02 Score=31.66 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CC----------CCHHHHHHHHHHHH
Q 003397 683 CWKAEEILKGILK-SGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRG---IR----------PCIFTYNTFVSGYA 748 (823)
Q Consensus 683 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~----------p~~~~~~~l~~~~~ 748 (823)
.++..+.++++.+ .|+..+......++. ...|++.+|+.++++....+ +. .|...+..++.++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 4556666666653 455556665554443 34799999999998877532 11 1222333444443
Q ss_pred cCCChhHHHHHHHHHHhCCCCC
Q 003397 749 GQGMFTEIDEVIKHMFQHNCKP 770 (823)
Q Consensus 749 ~~g~~~~A~~~~~~~~~~~~~p 770 (823)
..|+..+++..++++...|+..
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 4478888888888888877754
No 442
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=51.33 E-value=4.3e+02 Score=30.28 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=34.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC
Q 003397 644 KNSMYDRANEMLHLILESGMQPNLV-TYNNLMDMYARAGKCWKAEEILKGILKSGGTP 700 (823)
Q Consensus 644 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 700 (823)
..++.+.++.+++.+...|-. +.. .|...+++-...|+...++.+++.....-..|
T Consensus 474 l~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~ 530 (881)
T KOG0128|consen 474 LLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDP 530 (881)
T ss_pred HhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCc
Confidence 356778888888777765422 333 44455555556677777777777666543333
No 443
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.18 E-value=4.4e+02 Score=30.42 Aligned_cols=265 Identities=16% Similarity=0.112 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCChHHHHHHHhhcccCCCCCCHHHHHHH
Q 003397 138 IDLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKEVIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSI 217 (823)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 217 (823)
.+...+=+.|...|.++.|++..+--.. .-..++-.-++.|...++|..|-+++-.+. ..|..+
T Consensus 359 dE~R~vWk~yLd~g~y~kAL~~ar~~p~--------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~--------~~FEEV 422 (911)
T KOG2034|consen 359 DEARDVWKTYLDKGEFDKALEIARTRPD--------ALETVLLKQADFLFQDKEYLRAAEIYAETL--------SSFEEV 422 (911)
T ss_pred cchHHHHHHHHhcchHHHHHHhccCCHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh--------hhHHHH
Confidence 3445566777788888888765432200 012234444556667778888887777653 334455
Q ss_pred HHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHH---------HHHHHHhcCCCHHHHHHHHHH--------HHHC-CC
Q 003397 218 LHAYSKAGKYEKAISLF-EKVKEMGLSPTLVTYNV---------MLDVYGKMGRSWDRILGLLDE--------MRSR-GL 278 (823)
Q Consensus 218 i~~~~~~g~~~~A~~~~-~~m~~~g~~~~~~~~~~---------ll~~~~~~~~~~~~a~~~~~~--------m~~~-~~ 278 (823)
.--+....+.+ ++..| .+=.+ .++|...+=.. .+.-+.......+++.+-++. +... ..
T Consensus 423 aLKFl~~~~~~-~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~ 500 (911)
T KOG2034|consen 423 ALKFLEINQER-ALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVL 500 (911)
T ss_pred HHHHHhcCCHH-HHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555554 33333 22222 13332222222 222222221001222221111 1110 01
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 003397 279 EFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEV 358 (823)
Q Consensus 279 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 358 (823)
.-+...+.++...+...|+.+....+-.-|.. |..++..+++.+.+++|++++..-. +...+-..
T Consensus 501 ~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ 565 (911)
T KOG2034|consen 501 HKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKY 565 (911)
T ss_pred hHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHh
Confidence 11222233333444455666666655544432 4556777777777777777765432 11111111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 003397 359 VGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRA---GKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKK 435 (823)
Q Consensus 359 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 435 (823)
.-.+ ......+....|..+.+. . .......++..+.+. .....+...++-....-..-+...+|.++..|++.
T Consensus 566 ap~L-i~~~p~~tV~~wm~~~d~--~-~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~ 641 (911)
T KOG2034|consen 566 APEL-ITHSPKETVSAWMAQKDL--D-PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKH 641 (911)
T ss_pred hhHH-HhcCcHHHHHHHHHcccc--C-chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcC
Confidence 1111 122333333333333222 1 222223333344333 23344444444443332234667777777777766
Q ss_pred CCHH
Q 003397 436 GRSE 439 (823)
Q Consensus 436 g~~~ 439 (823)
.+-+
T Consensus 642 ~~~~ 645 (911)
T KOG2034|consen 642 ERDD 645 (911)
T ss_pred Cccc
Confidence 5533
No 444
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=51.15 E-value=47 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 003397 776 KIVVDGYCKARKYKEAMDF 794 (823)
Q Consensus 776 ~~l~~~~~~~g~~~~A~~~ 794 (823)
..++-.+..+|++++|.++
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3445555566666666666
No 445
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.06 E-value=52 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=8.9
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003397 711 GFCRQGLMQEAMRMLYEMTN 730 (823)
Q Consensus 711 ~~~~~g~~~~A~~~~~~m~~ 730 (823)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444444
No 446
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.04 E-value=2.6e+02 Score=28.07 Aligned_cols=119 Identities=11% Similarity=0.003 Sum_probs=68.6
Q ss_pred HhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCChhH
Q 003397 683 CWKAEEILKGILKSGGTPDLVSYNTVIKGFCR------QGLMQEAMRMLYEMTNRGIRPCI-FTYNTFVSGYAGQGMFTE 755 (823)
Q Consensus 683 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 755 (823)
++++..++++....+. |..+..-..|.++-. .-+|.....+|+-+.. +.|+. ++.|--+ +..+..-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHh
Confidence 4566667777666543 566655555544422 2356666667766666 34443 3344333 2233233466
Q ss_pred HHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 003397 756 IDEVIKHMFQHN-CKPNEL-TYKIVVDGYCKARKYKEAMDFLSKIKERDDSFN 806 (823)
Q Consensus 756 A~~~~~~~~~~~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 806 (823)
++.+++-+.+.+ +. ... .+..-.+.+.+.|+.++|...|+++.....+..
T Consensus 348 gLa~ve~L~~~~~L~-gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 348 GLAMVEALLARPRLD-GYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHHhhcccccc-cccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 666666666531 21 122 234456677888888888888888888876643
No 447
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=51.03 E-value=4.3e+02 Score=30.24 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHhHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCCHHHHHHHH
Q 003397 648 YDRANEMLHLILESGMQPNLVTYNNLMDMY-ARAGKCWKAEEILKGILKSGGTPDLV-SYNTVIKGFCRQGLMQEAMRML 725 (823)
Q Consensus 648 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 725 (823)
++.|...|.........+...+.......+ ..+++++.|+.+|+.+...|.. +.. .|-..++.-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 345555555544432222333333333333 3567899999999988876533 333 5555666666678888888877
Q ss_pred HHHHHcCCCCC
Q 003397 726 YEMTNRGIRPC 736 (823)
Q Consensus 726 ~~m~~~~~~p~ 736 (823)
+.....-..|+
T Consensus 521 R~ay~~~~~~~ 531 (881)
T KOG0128|consen 521 RKAYSQVVDPE 531 (881)
T ss_pred HHHHhcCcCch
Confidence 77766544443
No 448
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.85 E-value=36 Score=24.33 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 714 RQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 714 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
....+++..++++.+.. ..-|-.....++.+|...|++++|.++++++.+
T Consensus 2 ~~~~~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 2 TKQQLEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp ----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
No 449
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.78 E-value=65 Score=31.99 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003397 709 IKGFCRQGLMQEAMRMLYEMTNR---GIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKA 785 (823)
Q Consensus 709 ~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 785 (823)
.+-|.+..++..|...|.+-+.. +-..+.+.|+.-..+-...|++..|+.-...++...+. ....|..=+.++..-
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHH
Q ss_pred CChHHHHHHHHHHhhcCCC
Q 003397 786 RKYKEAMDFLSKIKERDDS 804 (823)
Q Consensus 786 g~~~~A~~~~~~~~~~~~~ 804 (823)
.++.+|..|+++..+.+.+
T Consensus 167 e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHhhhhhhhHH
No 450
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=49.74 E-value=5.5 Score=35.07 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003397 5 IFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPS 42 (823)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~ 42 (823)
.+|||+..|+...+++||.+....++++++..+.+.++
T Consensus 1 ~~Ppp~~~P~s~~~~~Pp~~~~~~PP~~~~~~~~~~~p 38 (157)
T PF07304_consen 1 MTPPPPSLPPSQAPPPPPQPSGPVPPASPPVDPSSIPP 38 (157)
T ss_dssp --------------------------------------
T ss_pred CCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 451
>PF15195 TMEM210: TMEM210 family
Probab=49.68 E-value=13 Score=28.26 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 003397 27 FSSATLPPPPPQSSPSVP 44 (823)
Q Consensus 27 ~~~~~~~p~~~~~~~~~p 44 (823)
+-...+++|||||||+++
T Consensus 99 ~m~~~p~~pppppP~~p~ 116 (116)
T PF15195_consen 99 TMEASPEEPPPPPPPPPE 116 (116)
T ss_pred ecCCCCCCCCcCcCCCCC
No 452
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.63 E-value=32 Score=35.44 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCcccccCCCCCCC
Q 003397 5 IFPNRPVPPIRKKPSKPNPPLKFSSATL--------PPPPPQSSPSVPLDSLIQHLHHLSSSS 59 (823)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~p~~~~~~~~--------~p~~~~~~~~~p~~~~~~~~~~~~~~~ 59 (823)
..|.|..|+.+++|+.++|+....-..| |+.-+|++|+.|++...........+.
T Consensus 420 ppp~p~f~m~~~hP~~~~p~~~~g~~~P~~~mpp~~P~~~~pppP~~pp~p~~~~~q~q~~~y 482 (483)
T KOG2236|consen 420 PPPSPSFPMFQPHPPESNPPANFGQANPFNQMPPAYPHQQSPPPPPPPPPPNSPMNQMQNPSY 482 (483)
T ss_pred CCCCCCCCccCCCCCCCCCcccccccCccccCCCCCccccCCCCCCCCCCCCChhhcccCCCC
No 453
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.49 E-value=1e+02 Score=35.31 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc------------------ccCCCCCCCCCCCCC
Q 003397 4 TIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQ------------------HLHHLSSSSSSSSSP 65 (823)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~------------------~~~~~~~~~~~~~~~ 65 (823)
.+.|..|.-|.|.+||.+.+|++.+-++.|..+|-+++.+++....+ ...++.+-++.+-||
T Consensus 975 ai~~skpl~~~~~~PP~~r~~~~s~~~~~p~~~~~s~~t~~~~~a~~a~~~~~~~~~~~P~~~~~s~~~~~~~~~~~~p~ 1054 (1080)
T KOG0566|consen 975 AIPPSKPLIPRPIRPPSARSPSPSAKSPSPTEAPNSSSTSMPSPASAATLSGPWYVISKPLAPPQSNNGLNQQAPAPLPP 1054 (1080)
T ss_pred cCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCccchhccCCCcccccCCccchhhccccCCCCCCCCCC
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCC
Q 003397 66 LHIAAASTAAKRANSEKPTSVFDGKD 91 (823)
Q Consensus 66 ~~~~~~s~~~~~~~~~~~~~~~~~~~ 91 (823)
+.++.+...++.....+.+.+..+..
T Consensus 1055 p~~~~p~~~a~~~~~~p~~~~~~~p~ 1080 (1080)
T KOG0566|consen 1055 PAPPPPPVGAPLGPGPPLPNVPLPPP 1080 (1080)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
No 454
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=49.45 E-value=79 Score=35.35 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCC
Q 003397 1 MEGTIFPNRPVPPIRKKPSKPNPPLKFSS-ATLPPPPPQSSPSVPLDSLIQHLHHLSSSSSSSSSPLHIAAASTAAKRAN 79 (823)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~p~~~~~-~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 79 (823)
++-.+.|.+|-|.+.+.+.|+.|.+.... .+...+|||.+|+-++......-..+..++.++.+.++.++.+..+.+..
T Consensus 678 ~~~rg~P~~~~~~h~~~r~P~~~r~~~~~~g~g~~~ppp~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (759)
T PF05518_consen 678 REARGAPLRPTPHHQPLRAPQLPRPGGPGGGGGAAPPPPAPPPGPPPPPPPPADGPDVAPAPPAPAPHVPPGAAQADRAT 757 (759)
T ss_pred ccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCccccccccC
Q ss_pred CC
Q 003397 80 SE 81 (823)
Q Consensus 80 ~~ 81 (823)
..
T Consensus 758 ~~ 759 (759)
T PF05518_consen 758 NE 759 (759)
T ss_pred CC
No 455
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=49.09 E-value=74 Score=37.37 Aligned_cols=106 Identities=20% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC--------CCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcc
Q 003397 3 GTIFPNRPVPPIRKKPSKPNP-PLKFSSATLPPPPP--------QSSPSVPLDSLIQHLHHLSSSSSSSSSPLHIAAAST 73 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~-p~~~~~~~~~p~~~--------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 73 (823)
+-+.|+.+++|...+-|..+- +..+.-...|||+| ||-++.-+.+..++.|+..++.+++.++..+-+...
T Consensus 126 ~~~~~~~~~~~~~sk~p~~~~v~~~~~~~~~P~p~Ppy~s~pg~pP~~s~~~~Sp~sp~h~sqps~~s~~s~~a~~~~~~ 205 (1639)
T KOG0905|consen 126 LYPAPGSPGGPEYSKQPAAQSVSLLPDMYFVPPPLPPYTSVPGVPPQHSRRPQSPPSPIHHSQPSDSSTFSHVAPFPAKS 205 (1639)
T ss_pred CCCCCCCCCCcccCCCccccccccCcccCcCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCchhhh
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCcccccchh
Q 003397 74 AAKRANSEKPTSVFDGKDDKGSVSNDGSFEFLSKR 108 (823)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (823)
--.-........-....+.-++...++..+..+++
T Consensus 206 ~~~is~~~e~~~~g~sr~dl~~~dy~~~nd~~~~~ 240 (1639)
T KOG0905|consen 206 QDKISSEKEFENNGHSRTDLDTSDYTGGNDHSIPY 240 (1639)
T ss_pred hhhhcccchhhcCCCcccccccccccCcccccCCC
No 456
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=49.01 E-value=64 Score=29.60 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCcccccCCCCCCCCCC
Q 003397 4 TIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSP-SVPLDSLIQHLHHLSSSSSSS 62 (823)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~-~~p~~~~~~~~~~~~~~~~~~ 62 (823)
...++.|-|+.+...+...|.....++.++|++.|..| +.|..+..+.-.++.+.+|..
T Consensus 139 p~~~ss~~~sS~q~~~~~~Ps~~~ts~~~s~~~~p~~paa~pssPaetp~gnl~~gsSFT 198 (205)
T PF12238_consen 139 PAQPSSPTPSSPQGTSTTQPSAPSTSPGTSPPGTPGTPAAQPSSPAETPQGNLNPGSSFT 198 (205)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCcee
No 457
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=49.01 E-value=33 Score=33.13 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003397 1 MEGTIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVP 44 (823)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p 44 (823)
|+|- +.-.||.|.+-++++|-|++++.+.+-.|++|.|.++.|
T Consensus 99 m~g~-LGQaaPvPa~aPa~~a~Pap~~~pa~d~paap~P~~~~P 141 (407)
T PF04625_consen 99 MPGF-LGQAAPVPAPAPAPAAAPAPPPAPAADEPAAPAPAAFQP 141 (407)
T ss_pred Cccc-cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
No 458
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=48.84 E-value=26 Score=30.50 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCC
Q 003397 13 PIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSS 57 (823)
Q Consensus 13 ~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~ 57 (823)
+-+.+|.+.+-+...+....+-+||+||||+-+.-+..+.+...+
T Consensus 164 ~~p~~~~k~~~~~a~~~~~~~~~pp~pppp~~p~~~t~s~s~~~~ 208 (225)
T KOG3397|consen 164 SNPSFLSKIAQPSASSTVSASAPPPPPPPPMAPKMVTRSTSPIVD 208 (225)
T ss_pred CCCCchhhcCCcccccccCCCCCCCcccCCCCccceecCCCCCCC
No 459
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.70 E-value=1.8e+02 Score=25.22 Aligned_cols=99 Identities=10% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCcccHHHHHHHHHhcCC-HHHHH
Q 003397 266 ILGLLDEMRSRGLEFDEFT--CSTVISACGREGLLNEAKEFFAGLKLEGY-----VPGTVTYNSLLQVFGKAGV-YSEAL 337 (823)
Q Consensus 266 a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~~~-~~~A~ 337 (823)
..+....|.+.+..++..+ .+.++.-....+++....++++.+..... ..+...|..++.+..+... ---+.
T Consensus 21 i~~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~ 100 (145)
T PF13762_consen 21 INSHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSL 100 (145)
T ss_pred HHHHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHH
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHH
Q 003397 338 SILKEMEDNNCPPDSVTYNEVVGAYVR 364 (823)
Q Consensus 338 ~~~~~m~~~~~~~~~~~~~~li~~~~~ 364 (823)
.+|.-|++.+...+..-|..+|.++.+
T Consensus 101 ~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 101 TLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc
No 460
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.65 E-value=1.8e+02 Score=25.22 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003397 211 VRAYTSILHAYSKAGKYEKAISLFEKVKEMGL-----SPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTC 285 (823)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 285 (823)
....|.++.-....+++.-.+.+++.+..... ..+...|++++.+..+..-..-.+..+|.-|++.+.+.+..-|
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy 118 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY 118 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Q ss_pred HHHHHHHHc
Q 003397 286 STVISACGR 294 (823)
Q Consensus 286 ~~ll~~~~~ 294 (823)
..+|+++.+
T Consensus 119 ~~li~~~l~ 127 (145)
T PF13762_consen 119 SCLIKAALR 127 (145)
T ss_pred HHHHHHHHc
No 461
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.64 E-value=19 Score=35.63 Aligned_cols=116 Identities=16% Similarity=0.097 Sum_probs=0.0
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHH
Q 003397 680 AGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDE 758 (823)
Q Consensus 680 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 758 (823)
.|.++.|++.|...+... .+....|..-..++.+.++...|++=+...++ +.|| ..-|-.-..+-...|+|++|.+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 759 VIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 759 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
.+....+.++ +..+-..|-...-..+..++-...+++.++
T Consensus 204 dl~~a~kld~--dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDY--DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhccc--cHHHHHHHHHhccchhhhhhchhHHHHHHH
No 462
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=29 Score=37.21 Aligned_cols=45 Identities=29% Similarity=0.583 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003397 3 GTIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDS 47 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~ 47 (823)
|+--|-+|+|+.+++|.+..+++....++.|||.-.++||.|.+.
T Consensus 78 ~t~a~~~p~~a~~~~p~~~~~~~d~a~~~~~~p~a~~~pp~~~~a 122 (922)
T KOG2677|consen 78 GTSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARPPPPRPAPA 122 (922)
T ss_pred cccCCCCCCCCCCCCCCccccccccccCCCCCcccCCCCCCCCCC
No 463
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.23 E-value=90 Score=35.74 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 003397 2 EGTIFPNRP-VPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSSSSSSSSSPLHIAAASTAAKRANS 80 (823)
Q Consensus 2 ~~~~~~~~~-~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 80 (823)
|-+++|-+| .++....-+.+.-|+..+..+.|.+||.+-+++|.+........+.+++.+.++|.+.+..+........
T Consensus 954 ~~~l~p~~~~~~~~~~~~~~~ai~~skpl~~~~~~PP~~r~~~~s~~~~~p~~~~~s~~t~~~~~a~~a~~~~~~~~~~~ 1033 (1080)
T KOG0566|consen 954 EEALLPEPPQAVPVSLSSSTDAIPPSKPLIPRPIRPPSARSPSPSAKSPSPTEAPNSSSTSMPSPASAATLSGPWYVISK 1033 (1080)
T ss_pred ccccCCCCCCCCcccccCccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCccchhccCCCcccccC
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 003397 81 EKPTSVFDGKDDKGSVSNDG 100 (823)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (823)
+...+.....-......+.+
T Consensus 1034 P~~~~~s~~~~~~~~~~~~p 1053 (1080)
T KOG0566|consen 1034 PLAPPQSNNGLNQQAPAPLP 1053 (1080)
T ss_pred CccchhhccccCCCCCCCCC
No 464
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.23 E-value=2.5e+02 Score=26.62 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003397 598 MLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMY 677 (823)
Q Consensus 598 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 677 (823)
..++..+..|...-++.-|-..++.+. .+.--.+.+--|.+..+-+--.++.+-....++.-+..-...++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HHcCCHhHHHHHHHHHH------------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003397 678 ARAGKCWKAEEILKGIL------------KSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTF 743 (823)
Q Consensus 678 ~~~g~~~~A~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 743 (823)
...|+..+|+.-++.-. +.--.|.+.....++..|. .+++++|.+.+.++-+.|+.|....-+..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 465
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.17 E-value=2.7e+02 Score=27.17 Aligned_cols=191 Identities=17% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCCH
Q 003397 188 KESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKVKEM----GLSPTLVTYNVMLDVYGKMGRSW 263 (823)
Q Consensus 188 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~ll~~~~~~~~~~ 263 (823)
+++++++|.+++.. -...+.+.|+...|.++-.-|.+. +...|......++..+...+...
T Consensus 2 ~~kky~eAidLL~~---------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS---------------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHH---------------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Q ss_pred HHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 003397 264 DRILGLLDEMRSR-----GLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYSEALS 338 (823)
Q Consensus 264 ~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~ 338 (823)
..-.++.+.+.+. ...-+......+...|.+.|++.+|+..|-.--.. +...+..++..+...|...++
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~----~~~~~~~ll~~~~~~~~~~e~-- 140 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP----SAFAYVMLLEEWSTKGYPSEA-- 140 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH----HHHHHHHHHHHHHHHTSS--H--
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh----hHHHHHHHHHHHHHhcCCcch--
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCH
Q 003397 339 ILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSK---------------GLMPNAVTYTTLIDAYGRAGKV 403 (823)
Q Consensus 339 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------~~~p~~~~~~~li~~~~~~g~~ 403 (823)
.......+-.|.-.++...|...++...+. ........|..++-..|..++.
T Consensus 141 -------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~ 207 (260)
T PF04190_consen 141 -------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNL 207 (260)
T ss_dssp -------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-H
T ss_pred -------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcH
Q ss_pred HHHHHHHHH
Q 003397 404 NKALRLLNK 412 (823)
Q Consensus 404 ~~A~~~~~~ 412 (823)
+.-..+.+.
T Consensus 208 ~~F~~L~~~ 216 (260)
T PF04190_consen 208 PLFKKLCEK 216 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 466
>PF06484 Ten_N: Teneurin Intracellular Region; InterPro: IPR009471 Teneurins are a family of phylogenetically conserved transmembrane glycoproteins expressed during pattern formation and morphogenesis []. Originally discovered as ten-m and ten-a in Drosophila melanogaster, the teneurin family is conserved from Caenorhabditis elegans (ten-1) to vertebrates, in which four paralogs exist (teneurin-1 to -4 or odz-1 to -4). Their distinct domain architecture is highly conserved between invertebrate and vertebrate teneurins, particularly in the extracellular part. The intracellular domains of Ten-a, Ten-m/Odz and C. elegans Ten-1 are significantly different, both in size and structure, from the comparable domains of vertebrate teneurins, but the extracellular domains of all of these proteins are remarkably similar. The large C-terminal extracellular domain consists of eight EGF-like repeats (see PDOC00021 from PROSITEDOC), a region of conserved cysteines and unique YD-repeats. The N-terminal intracellular domain of vertebrate teneurins contains two EF-hand-like calcium-binding motifs and two polyproline regions involved in protein-protein interactions, followed by a single-span transmembrane domain. The intracellular domain is linked to the cytoskeleton through its interaction with the adaptor protein CAP/ponsin and can be cleaved near (or possibly in) the transmembrane domain and transported to the nucleus [, ], giving teneurins the potential to act as transcription factors [, ]. There is considerable divergence between intracellular domains of invertebrate and vertebrate teneurins as well as between different invertebrate proteins [, , , , ]. This domain is found in the intracellular N-terminal region of the Teneurin family.; GO: 0007165 signal transduction, 0016021 integral to membrane
Probab=47.91 E-value=1.3e+02 Score=29.76 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCC-------------------------------------------------CCCCCCCCCCCCCC
Q 003397 3 GTIFPNRPVPPIRKKPS-------------------------------------------------KPNPPLKFSSATLP 33 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~p~-------------------------------------------------~~~~p~~~~~~~~~ 33 (823)
+...|+++.|++|+.|+ ++...--....+||
T Consensus 167 ~~~~p~~~~P~pPP~PPa~e~q~~~l~~~~~q~~~~~~~~~~~~p~~~l~~~~s~~~~~p~~~~~~~~~~~~~~~lr~PP 246 (370)
T PF06484_consen 167 ASSSPPESLPSPPPSPPAHECQRPLLGNSTAQPVQDSDSEEEFSPNSFLVQSGSGSICVPSHANDQPPNHHNHSRLRTPP 246 (370)
T ss_pred CCCCccccCCCCcCCCcccccccccccccccCcccCCCcccccCcceeeeecccccccCCccccCCCCcccCCCcCCCCC
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 003397 34 PPPPQSSPSVPLDSLIQHLHHLSSSSSSSSSPLHIAAASTAAKRANSEKPTSVFDGKDDKGSVSNDGSFEF 104 (823)
Q Consensus 34 p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (823)
+|||..-.+.........+....-.....++|.+......................+-+.++...-+.|-|
T Consensus 247 ~P~ph~~~~~~~~~s~~sLnr~~~t~r~~pspap~~~~~~~e~~~~~dsv~lqDsWvLnSNVPLETRhflf 317 (370)
T PF06484_consen 247 PPPPHNHTPSHHAPSINSLNRNSLTNRSNPSPAPTDGSLPGEPPTTPDSVQLQDSWVLNSNVPLETRHFLF 317 (370)
T ss_pred cCCCCcccccccccccccccccccCCCCCCCCCCccccCCCCCCCCccccccccceeecCCcccccccccc
No 467
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.57 E-value=39 Score=19.50 Aligned_cols=33 Identities=9% Similarity=-0.095 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003397 786 RKYKEAMDFLSKIKERDDSFNDESVKRLTFRVRE 819 (823)
Q Consensus 786 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 819 (823)
|+.+.|.++++++....| .....|...++...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~~e~~ 33 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAEFEER 33 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHHHHhC
No 468
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.24 E-value=4.2e+02 Score=29.03 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH------------HHHHHHHHH
Q 003397 717 LMQEAMRMLYEMTN-RGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELT------------YKIVVDGYC 783 (823)
Q Consensus 717 ~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~------------~~~l~~~~~ 783 (823)
..++....+.+..+ .|+..+......++.... |++..+...++++...+-..+... ...+++++.
T Consensus 176 s~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~--GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~ 253 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLAD--GAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALA 253 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHH
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 003397 784 KARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREIL 821 (823)
Q Consensus 784 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 821 (823)
. ++.++|..+++++...+ .....+...+...++.++
T Consensus 254 ~-~d~~~Al~~l~~Ll~~G-~~~~~Il~~L~~~~r~ll 289 (504)
T PRK14963 254 Q-GDAAEALSGAAQLYRDG-FAARTLVEGLLEAFRAAL 289 (504)
T ss_pred c-CCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH
No 469
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=47.07 E-value=73 Score=32.93 Aligned_cols=72 Identities=31% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCc
Q 003397 1 MEGTIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSSSSSSSSSPLHIAAAS 72 (823)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s 72 (823)
|.=...||+++++++..+..+..+...+....|+|...+....|.+...+......+.++............
T Consensus 1 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (353)
T PLN00034 1 MKPIQPPPGVPLPSTARHTTKSRPRRRPDLTLPLPQRDPSLAVPLPLPPPSSSSSSSSSSSASGSAPSAAKS 72 (353)
T ss_pred CCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCcccccCCCCCCCCCC
No 470
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=46.74 E-value=1e+02 Score=29.36 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q 003397 2 EGTIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSSSSSSSSSPL 66 (823)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 66 (823)
+..++|+.||+....+|.+++|.....+.++++++|..+...+++...........+..+..+++
T Consensus 40 dPaPtPt~PPtt~~aPP~p~~P~atPaP~appt~~PAdPnA~~Pp~PadPna~~pppadpnap~P 104 (297)
T PF07174_consen 40 DPAPTPTAPPTTTTAPPAPPPPAATPAPTAPPTPPPADPNAPPPPPPADPNAAPPPPADPNAPPP 104 (297)
T ss_pred CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.62 E-value=1.3e+02 Score=27.06 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q 003397 753 FTEIDEVIKHMFQHNCKPN-------ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVREI 820 (823)
Q Consensus 753 ~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 820 (823)
++-|+.+++.+.+.-..|+ ..+-...+-.|.+.|.+++|.+++++... +++...- ...|..-|+++
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~-r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL-RMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH-HHHHHHHHHcc
No 472
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=46.30 E-value=75 Score=36.88 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcccc
Q 003397 2 EGTIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSSSSSSSSSPLHIAAASTAA 75 (823)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 75 (823)
.++....++.++....+.++++|....++++.+++++.+++.+.+...........++.+..+....+......
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1228)
T PRK12270 40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113 (1228)
T ss_pred CCCCCCCCCcccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCccCC
No 473
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.20 E-value=2.9e+02 Score=26.96 Aligned_cols=191 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCh
Q 003397 433 GKKGRSEEMMKILCDMKSSGCSPNRITWNTMLTMCGNKGLDKYVNQVFREMKSC----GFEPDRDTFNTLISAYGRCGSG 508 (823)
Q Consensus 433 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~ 508 (823)
.+.+++++|++++..-... +.+.++...|-++-..+++. +.+.+......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 003397 509 V-DATKMFEDMMK-----TGFTPCVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIR 582 (823)
Q Consensus 509 ~-~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 582 (823)
+ +-.++.+.+++ ....-+......+...|.+.|++.+|...|-.-.+. +...+..++..+...|...+..
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~----~~~~~~~ll~~~~~~~~~~e~d 141 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP----SAFAYVMLLEEWSTKGYPSEAD 141 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH----HHHHHHHHHHHHHHHTSS--HH
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh----hHHHHHHHHHHHHHhcCCcchh
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHC-------------CCCCCHHHHHHH--HHHHHccCC
Q 003397 583 KIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKH-------------GYKPDLVIFNSM--LSICAKNSM 647 (823)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~l--~~~~~~~~~ 647 (823)
-+..+. +..|...+++..|...++...+. ++.++....|-+ +-..+..++
T Consensus 142 lfi~Ra---------------VL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 142 LFIARA---------------VLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp HHHHHH---------------HHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred HHHHHH---------------HHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Q ss_pred hHHHHHHHHH
Q 003397 648 YDRANEMLHL 657 (823)
Q Consensus 648 ~~~A~~~~~~ 657 (823)
.+.-..+.+.
T Consensus 207 ~~~F~~L~~~ 216 (260)
T PF04190_consen 207 LPLFKKLCEK 216 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 474
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=46.17 E-value=21 Score=31.03 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003397 9 RPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSP 41 (823)
Q Consensus 9 ~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~ 41 (823)
+.+-++.+-|-+.....+..+.+||+||||+.|
T Consensus 164 ~~p~~~~k~~~~~a~~~~~~~~~pp~pppp~~p 196 (225)
T KOG3397|consen 164 SNPSFLSKIAQPSASSTVSASAPPPPPPPPMAP 196 (225)
T ss_pred CCCCchhhcCCcccccccCCCCCCCcccCCCCc
No 475
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.00 E-value=3.6e+02 Score=27.93 Aligned_cols=180 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHC---------CCCC
Q 003397 212 RAYTSILHAYSKAGKYEKAISLFEKVKEM--GLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSR---------GLEF 280 (823)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~---------~~~~ 280 (823)
+.+.-+...|..+|+++.|++.|-+.+.. ..+.....|..+|..-...++ |..+..+..+..+. .+.+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~n-w~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGN-WGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcc-hhhhhhHHHHHHhCchhhhhHHHhcCc
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhH
Q 003397 281 DEFTCSTVISACGREGLLNEAKEFFAGLKLEGYV------PGTVTYNSLLQVFGKAGVYSEALSILKEMEDNNCPPDSVT 354 (823)
Q Consensus 281 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 354 (823)
-...+..+...+.+ +++.|.+.|-......+. |.-.+-...+.+++.-++-+--+.+.....-..+.--...
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHH
Q 003397 355 YNEVVGAYVRAGFYEEGAALIDTMSSK-----GLMPNAVTYTTLID 395 (823)
Q Consensus 355 ~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~ 395 (823)
...++..|+.. ++...+++++++... -+.|.+.+.-.+|.
T Consensus 308 lr~il~~fy~s-ky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 308 LREILFKFYSS-KYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 476
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=45.77 E-value=37 Score=32.39 Aligned_cols=51 Identities=25% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 003397 10 PVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSSSSS 60 (823)
Q Consensus 10 ~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~ 60 (823)
||+|+...|+.|++-.+.++++.+++++.++.+.|.....+......++.+
T Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~V~APma 205 (274)
T PLN02983 155 PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSPMA 205 (274)
T ss_pred CCCcccCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCeEeCCcC
No 477
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.24 E-value=86 Score=20.95 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003397 217 ILHAYSKAGKYEKAISLFEKVKEMGLSPTLVTYNVMLD 254 (823)
Q Consensus 217 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 254 (823)
++....+.|-..++..++++|.+.|+..+...|..++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
No 478
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=44.92 E-value=1.3e+02 Score=32.38 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc---------cCCCCCCCCCCCCCCCCCCCcc
Q 003397 3 GTIFPNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQH---------LHHLSSSSSSSSSPLHIAAAST 73 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~ 73 (823)
+-|+-.+|-++.++|-|++.+-.+...+..-|++...++..+..+-..+ +....++++++|.+++.+..+.
T Consensus 564 eKIF~t~Pd~S~~~pvP~~R~laRR~~~is~p~~~~~r~~~~~t~~~~~~~~E~~~~~In~~~ts~sSpp~~~~~~s~si 643 (812)
T KOG1451|consen 564 EKIFKTKPDSSFGSPVPNGRPLARRSFGISTPSPITSRSRSPKTPGIGFDVGELGDFQINNNRSSLTSPPGIAPLASGSI 643 (812)
T ss_pred HHHhcCCCCccCCCCCCCCCccccccCCccCCCcccCCCCCccCCCccccchhhhcCCCCCcccccCCCCCCCCCcCCCc
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003397 74 AAKRANSEKPTSVFDGKDDKGSVSNDGS 101 (823)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (823)
.........-.+..++.+..+..-..+.
T Consensus 644 qe~~e~~~~~k~~s~p~~~~~l~p~p~~ 671 (812)
T KOG1451|consen 644 QEIDEVAKKERNSSDPLNSLGLFPSPGD 671 (812)
T ss_pred CcccccCccccCcccccccCCCCCCCCC
No 479
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.53 E-value=4.2e+02 Score=28.23 Aligned_cols=503 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH-------------HHHHHH
Q 003397 274 RSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLEGYVPGTVTYNSLLQVFGKAGVYS-------------EALSIL 340 (823)
Q Consensus 274 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~-------------~A~~~~ 340 (823)
+..+..............-...+.++...+++..+...|.....+.+|.-+..|.+.|... .+...-
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHH
Q 003397 341 KEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYG--------RAGKVNKALRLLNK 412 (823)
Q Consensus 341 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--------~~g~~~~A~~~~~~ 412 (823)
+.|......-....+......|.....+..|+++...+..+ +.+-...+........ .+.+...-+.++.+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~ 167 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAE 167 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHCC-----------------------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHHHHH
Q 003397 413 MKESG-----------------------------CAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITWNTM 463 (823)
Q Consensus 413 ~~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 463 (823)
|...+ -.+.......-+++|.....+..+.+-.+..... .+......+
T Consensus 168 ~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~---a~~s~~~l~ 244 (696)
T KOG2471|consen 168 IEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI---AQDSSMALL 244 (696)
T ss_pred HHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh---cCCCcHHHH
Q ss_pred HHH--HHccCCHHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCC-
Q 003397 464 LTM--CGNKGLDKYVNQVFREMKSCGFEP--------DRDTFNTLISAYGRCGSGVDATKMFEDMMK-------TGFTP- 525 (823)
Q Consensus 464 l~~--~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~- 525 (823)
++. +.-.|++..|.+++...--....- .-..||.|...+.+.|.+..+..+|...++ .|++|
T Consensus 245 LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~ 324 (696)
T KOG2471|consen 245 LKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA 324 (696)
T ss_pred HHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCC
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-
Q 003397 526 ---------CVTTYNAFLNALARRGDWKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFP- 595 (823)
Q Consensus 526 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 595 (823)
+..+.....-.|...|++-.|.+.|.+.... +.-++..|..+..+|....+-.-.++--......++..
T Consensus 325 ~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~ 403 (696)
T KOG2471|consen 325 KTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVH 403 (696)
T ss_pred cceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceee
Q ss_pred ---------------------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003397 596 ---------------------------------SWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSIC 642 (823)
Q Consensus 596 ---------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 642 (823)
....++.-+...-...++..-...-..-.+.|-.++..--+.--+.-
T Consensus 404 vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk 483 (696)
T KOG2471|consen 404 VIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSK 483 (696)
T ss_pred eecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchh
Q ss_pred HccCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 003397 643 AKNSMYD--------RANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCR 714 (823)
Q Consensus 643 ~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 714 (823)
...|+.. -+.+-++.|.. .+|......-.+.|+.-.|+..-+++.+. ..-...|-.|...|+
T Consensus 484 ~h~gd~~~~~p~ssp~~~e~leNm~~-------ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~--~~lS~~~kfLGHiYA- 553 (696)
T KOG2471|consen 484 EHKGDMSQEIPQSSPSAFEDLENMRQ-------AIFANMAYVELELGDPIKALSAATKLLQL--ADLSKIYKFLGHIYA- 553 (696)
T ss_pred cCCCCCCccCCCCCcchHHHHHHHHH-------HHHHHHHHHHHHhcChhhHHHHHHHHHhh--hhhhhHHHHHHHHHH-
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-----------------------------------------------HHHHHHHHHH
Q 003397 715 QGLMQEAMRMLYEMTNRGIRPCI-----------------------------------------------FTYNTFVSGY 747 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p~~-----------------------------------------------~~~~~l~~~~ 747 (823)
.||+-++++..+.+-..++ +.+..|..++
T Consensus 554 ----aEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~ 629 (696)
T KOG2471|consen 554 ----AEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL 629 (696)
T ss_pred ----HHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Q ss_pred HcCCChhHHHHHH---HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003397 748 AGQGMFTEIDEVI---KHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSK 797 (823)
Q Consensus 748 ~~~g~~~~A~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 797 (823)
+-.|++|.|..++ -.|+..-..|........++ .+.|+...|...+++
T Consensus 630 alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyid--L~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 630 ALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYID--LMLGRSQDALARLKQ 680 (696)
T ss_pred HHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHH--HhcCCCcchHHHHHh
No 480
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=43.93 E-value=1.1e+02 Score=32.13 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC------
Q 003397 677 YARAGKCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQ------ 750 (823)
Q Consensus 677 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------ 750 (823)
+...|++.+|+..|+.++ +...+.......+.+++.+++....+ ++....+..-.+.
T Consensus 214 ~~t~gKF~eA~~~Fr~iL----------~~i~l~vv~~~~E~~e~~eli~icrE-------Yilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSIL----------HSIPLLVVESREEEDEAKELIEICRE-------YILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHHTT-HHHHHHHHHHHH----------HHHHC--BSSCHHHHHHHHHHHHHHH-------HHHHHHHHHHHCTS-TTTH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeecCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccccch
Q ss_pred CChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003397 751 GMFTEIDEVIKHMFQHNCKPN--ELTYKIVVDGYCKARKYKEAMDFLSKIKERDDSFNDESVKRLTFR 816 (823)
Q Consensus 751 g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 816 (823)
.+.....++.--+...+++|. .-+...-+....|.+++..|..+.+++++..|........+-+..
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~ 344 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQ 344 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
No 481
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.90 E-value=2.6e+02 Score=29.17 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChh--HHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 003397 324 LQVFGKAGVYSEALSILKEMEDNNCPPDSV--TYNEVVGAYVR--AGFYEEGAALIDTMSSKGLM--PNAVTYTTLIDAY 397 (823)
Q Consensus 324 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~ 397 (823)
+..+...++|..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++........ -....+..++...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 003397 398 GRAGKVNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKS 450 (823)
Q Consensus 398 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 450 (823)
-....+......-..-.+.-...-....-.-..--...|+++.|.-.+-++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 482
>PRK10941 hypothetical protein; Provisional
Probab=43.76 E-value=2.9e+02 Score=27.15 Aligned_cols=83 Identities=8% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 003397 704 SYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPC-IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKP-NELTYKIVVDG 781 (823)
Q Consensus 704 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 781 (823)
..+.+-.+|.+.++++.|+++.+.+.. +.|+ ..-+.--.-.|.+.|.+..|..-++..++.-++. +.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q ss_pred HHhcCCh
Q 003397 782 YCKARKY 788 (823)
Q Consensus 782 ~~~~g~~ 788 (823)
+......
T Consensus 261 l~~~~~~ 267 (269)
T PRK10941 261 IEQKQIV 267 (269)
T ss_pred HhhcCcc
No 483
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=42.99 E-value=8 Score=38.67 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003397 3 GTIFPNRPVPPIRKKPSKPNPPLKFSSAT 31 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~p~~~~~p~~~~~~~ 31 (823)
+++.|||++++++++||+||.++..++..
T Consensus 17 ~~~~~pp~~~~~~~~~~~~p~~~~~~~~~ 45 (386)
T PF01698_consen 17 AAAAPPPPRLPPPPPPPPPPAPAAAAPNA 45 (386)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCCCCCCcccCCCCCcccccccc
No 484
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.74 E-value=1.3e+02 Score=30.30 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 003397 719 QEAMRMLYEMTNRGIRPC----IFTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARK 787 (823)
Q Consensus 719 ~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 787 (823)
+++..++.+++. -.|+ ...|..+++.....|.+++++.+|++++..|-+|=...-..+++.+-..++
T Consensus 120 eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k~~ 190 (353)
T PF15297_consen 120 EEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMKSQ 190 (353)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh
No 485
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.42 E-value=98 Score=20.69 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003397 393 LIDAYGRAGKVNKALRLLNKMKESGCAPNVCTYNAVLG 430 (823)
Q Consensus 393 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 430 (823)
++....+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
No 486
>PHA02940 hypothetical protein; Provisional
Probab=42.40 E-value=3e+02 Score=25.97 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003397 654 MLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDL-VSYNTVIKGFCRQGLMQEAMRMLYEMTNRG 732 (823)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 732 (823)
+.+++.+...-+..+--..=+..-.-.|.+++|.+--.-+...-.+.+. .+|...+..|+...-+..-.++.++.++
T Consensus 47 I~kEi~~~~~~~ksVkeaielt~siL~~yy~~a~e~~k~Ls~Ay~kN~i~smF~nai~lYAnL~ainal~~~i~~~ik-- 124 (315)
T PHA02940 47 IQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKSKLLSDAYNKNAIKSMFDNAIELYANLAAINALLRLIRSFIK-- 124 (315)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHhHHHHHHHHHHHHHhCC--
Q ss_pred CCCCH-------------HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003397 733 IRPCI-------------FTYNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIK 799 (823)
Q Consensus 733 ~~p~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 799 (823)
+.|+. .|...++.-|.+.++.++-..+.+++-+. +.| ..+.--..-+++.+.+-++.++
T Consensus 125 ~~~~~t~~~~i~FtqkA~dtv~~la~~yvq~vk~d~r~~~a~~l~ke-Ls~-------~~d~~enepdle~d~keie~~l 196 (315)
T PHA02940 125 PEPTLTTPLFIDFTQKAKDTVILLAGRYVQDVKKDDRRTIANKLSKE-LSW-------TIDYQENEPDLESDFKEIEEEL 196 (315)
T ss_pred CCCCcCchHHHHHHHHhhhHHHHHHHHHHHHccccHHHHHHHHHHhh-hhH-------HHHHHhcCcchhhhHHHHHHHH
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhc
Q 003397 800 ERDDSFNDESVKRLTFRVREILE 822 (823)
Q Consensus 800 ~~~~~~~~~~~~~l~~~~~~~~~ 822 (823)
+.+.+....+|+.|.+.+...+|
T Consensus 197 E~~~dl~rGtY~vL~~ald~m~e 219 (315)
T PHA02940 197 EEKDDLSRGTYKVLKRALDLMKE 219 (315)
T ss_pred hccchhhhhHHHHHHHHHHHHHH
No 487
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.39 E-value=3.2e+02 Score=26.25 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003397 603 LILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAK-NSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAG 681 (823)
Q Consensus 603 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 681 (823)
++....++++++++...++++.+.+...+..-.+.+..+|-. .|....+++++..+....-.-.......++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~k- 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKK- 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHH-
Q ss_pred CHhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCChhHHHHHH
Q 003397 682 KCWKAEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCIFTY-NTFVSGYAGQGMFTEIDEVI 760 (823)
Q Consensus 682 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~ 760 (823)
+-+++... ...+...+=..+.....-.++.-+|.+|.. |..-| .-....-.+..-.++|.+.|
T Consensus 86 -------ie~EL~~~----C~eii~lId~~Lip~~~~~eskvfy~Kmkg-----DyyRYlaE~~~~~~~~~~~~~a~~aY 149 (236)
T PF00244_consen 86 -------IEDELIDI----CNEIIRLIDKSLIPSATSPESKVFYYKMKG-----DYYRYLAEFDSGDEKKEAAEKALEAY 149 (236)
T ss_dssp -------HHHHHHHH----HHHHHHHHHHTCHHHS-SHHHHHHHHHHHH-----HHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHH----HHHHHHHHHHHHhccccchhHHHHHHHHhc-----cccccccccccchhhHHHHHHHHHhh
Q ss_pred HHHHh---CCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHH-------hhcCCCCCHHHHHHHHHHHHHHh
Q 003397 761 KHMFQ---HNCKPNELTYKIVVDG-----YCKARKYKEAMDFLSKI-------KERDDSFNDESVKRLTFRVREIL 821 (823)
Q Consensus 761 ~~~~~---~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~ 821 (823)
+++.+ ..+.|...++-.|+-. |-..|+.++|.++.+++ .+.-++..-.....+++.++..+
T Consensus 150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl 225 (236)
T PF00244_consen 150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNL 225 (236)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHH
No 488
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.31 E-value=2.8e+02 Score=29.04 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCCHhHHHHHHHHHHHcCCC--CChhHHHHHHHHH
Q 003397 639 LSICAKNSMYDRANEMLHLILESGMQPNLV--TYNNLMDMYA--RAGKCWKAEEILKGILKSGGT--PDLVSYNTVIKGF 712 (823)
Q Consensus 639 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~ 712 (823)
+..+.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++........ -....+..++...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 003397 713 CRQGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGMFTEIDEVIKHMFQ 765 (823)
Q Consensus 713 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 765 (823)
-....+.........-.+.-..+-.........-=...|+++.|...+=++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 489
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.17 E-value=3.4e+02 Score=27.06 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003397 227 YEKAISLFEKVKEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFA 306 (823)
Q Consensus 227 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 306 (823)
..+|+++|.+..+. +..+.+..+....--...+.+.+++..--.+.-..|.-+..+.|+..+|.+.|.
T Consensus 232 i~~AE~l~k~ALka------------~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 232 IVDAERLFKQALKA------------GETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred HHHHHHHHHHHHHH------------HHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred HHHhCCCCCCcccHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 003397 307 GLKLEGYVPGTVTYNS---LLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRA 365 (823)
Q Consensus 307 ~~~~~g~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 365 (823)
++.+. .|-...+|. |+.++....-+.+...++.+..+...+.+....-+-.-.-.+.
T Consensus 300 DL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 300 DLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHH
No 490
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=41.72 E-value=37 Score=26.47 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003397 1 MEGTIFPNRPVPPIRKKPSKPNPPLKFSS 29 (823)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~p~~~~~ 29 (823)
+.=+..|.+..+|+++++++|.||+++++
T Consensus 57 ~d~P~~P~~~~~p~~~~~p~P~pppr~PS 85 (97)
T PF04834_consen 57 FDLPVYPSPASIPLQPPIPQPEPPPRPPS 85 (97)
T ss_pred ccCCCCCCcccCCCCCCCCCCCCCCCCCC
No 491
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=41.58 E-value=2.8e+02 Score=25.38 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCcccHHHHHH
Q 003397 248 TYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVISACGREGLLNEAKEFFAGLKLE--GYVPGTVTYNSLLQ 325 (823)
Q Consensus 248 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~ 325 (823)
..+.+-..+......-++++++-.++. -++...-.....|++++|.+-++.+.+. ....-...|..+..
T Consensus 4 ~i~si~~~L~e~d~~REE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ 74 (204)
T COG2178 4 EINSIREVLQEKDKAREEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYF 74 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred -HHHhcCC--HHHHHHHHHHHHhCCCCCChhH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003397 326 -VFGKAGV--YSEALSILKEMEDNNCPPDSVT-----------------YNEVVGAYVRAGFYEEGAALIDTMSS 380 (823)
Q Consensus 326 -~~~~~~~--~~~A~~~~~~m~~~~~~~~~~~-----------------~~~li~~~~~~g~~~~a~~~~~~~~~ 380 (823)
+++..+. +.+|.-++.-+...+++..... ..-.+--..+.|+++.|.+.++-|.+
T Consensus 75 ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 75 AGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 492
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=41.32 E-value=46 Score=31.79 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003397 7 PNRPVPPIRKKPSKPNPPLKFSSATLPPPPPQSSPSVPLDS 47 (823)
Q Consensus 7 ~~~~~~~~~~~p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~ 47 (823)
||.|+...|..|+...|-++...+.+++.|+.++|..+..+
T Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 195 (274)
T PLN02983 155 PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKS 195 (274)
T ss_pred CCCcccCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcC
No 493
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.30 E-value=1e+02 Score=29.61 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 003397 740 YNTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGY-CKARKYKEAMDFLSKIKERDDSFNDESVKRLTFRVR 818 (823)
Q Consensus 740 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 818 (823)
+..++..+...|+++++.++++++.+.+...+..--+.|..+| ..-|....+.+.+..+..............+++.++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Q ss_pred HHhc
Q 003397 819 EILE 822 (823)
Q Consensus 819 ~~~~ 822 (823)
+..+
T Consensus 84 ~kie 87 (236)
T PF00244_consen 84 KKIE 87 (236)
T ss_dssp HHHH
T ss_pred HHHH
No 494
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.14 E-value=53 Score=36.26 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCC
Q 003397 3 GTIFPNRPVPPIRKKP----SKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSSSSSSSSS 64 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~p----~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 64 (823)
|.+.+++|.||..+.+ |.+-||...+..|+++-++-|.-|.|+.+- ++++|.++.+-..++
T Consensus 113 Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~-spl~~~ss~se~~~~ 177 (1118)
T KOG1029|consen 113 GSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSN-SPLPHDSSVSEGRPS 177 (1118)
T ss_pred CCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCC-CCCCCCcchhhcCcc
No 495
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=40.99 E-value=63 Score=32.97 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCC
Q 003397 3 GTIFPNRPVPPIRKK-----------------PSKPNPPLKFSSATLPPPPPQSSPSVPLDSLIQHLHHLSSSSSSSSSP 65 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~-----------------p~~~~~p~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 65 (823)
+.+.|+||...--.+ -..|+||++...-+.+...|||||+.+..--......+..+++-.++.
T Consensus 335 vs~aP~pp~~~qq~~q~~~~~~~~~~~~~i~~~~tsppp~~~~~~~~~~dlppPp~~~~~~~g~ee~st~~~~~~~ap~s 414 (483)
T KOG2546|consen 335 VSFAPPPPTDTQQNQQQPISRGVMSSQRNLNRNDTSPPPSPPSNQPGPDDLPPPPPKSLSDLGREEKSTLPQPPPVAPSS 414 (483)
T ss_pred cccCCCCCcchhhchhhHHhhhhhhhccccccccCCCCCCCccccCCCCCCCCCCCCccccccccccccCCCCCCCCCCC
Q ss_pred CCCCCCc
Q 003397 66 LHIAAAS 72 (823)
Q Consensus 66 ~~~~~~s 72 (823)
+.+...+
T Consensus 415 p~w~p~s 421 (483)
T KOG2546|consen 415 PAWVPTS 421 (483)
T ss_pred cccccHH
No 496
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.95 E-value=3.5e+02 Score=26.25 Aligned_cols=238 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003397 562 ETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNFKCRALQGMERAFQELQKHGYKPDLVIFNSMLSI 641 (823)
Q Consensus 562 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 641 (823)
..++..+=..+.+...-..|.++......-+...-.+.-......-.-..++.+-.+.++++.+...+ +-.+|..--..
T Consensus 43 r~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~i 121 (318)
T KOG0530|consen 43 RDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVI 121 (318)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Q ss_pred HHccCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCChhHHHH------HHHHHHh
Q 003397 642 CAKNSMYD-RANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEILKGILKSGGTPDLVSYNT------VIKGFCR 714 (823)
Q Consensus 642 ~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------l~~~~~~ 714 (823)
....|++. .-+++.+.|+...-+ +-..|..=-.++..-+.++.-+.+..++++..+. |-.+||. ...+...
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred HHHhcCcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCcc
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH------Hhc
Q 003397 715 QGLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQGM---FTEIDEVIKHMFQHNCKPNELTYKIVVDGY------CKA 785 (823)
Q Consensus 715 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~------~~~ 785 (823)
.-..+.-+.+..+++.. ++-|...|+-|...+..... ..+...+...+...-..-.+.....|++.| .++
T Consensus 200 ~~~le~El~yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~ 278 (318)
T KOG0530|consen 200 KAELERELNYTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKS 278 (318)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccc
Q ss_pred CChH---HHHHHHHHHh-hcCC
Q 003397 786 RKYK---EAMDFLSKIK-ERDD 803 (823)
Q Consensus 786 g~~~---~A~~~~~~~~-~~~~ 803 (823)
+.-+ +|.++++.+. +.+|
T Consensus 279 ~~~~~a~~a~~ly~~La~~~Dp 300 (318)
T KOG0530|consen 279 SAEELARKAVKLYEDLAIKVDP 300 (318)
T ss_pred cchHHHHHHHHHHHHHhhccCc
No 497
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=40.80 E-value=70 Score=29.12 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCcccccCCCCCCCCCCCC
Q 003397 3 GTIFPNRPVPPIRKKP-SKPNPPLKFSSATLPPPP---PQSSPSVPLDSLIQHLHHLSSSSSSSSS 64 (823)
Q Consensus 3 ~~~~~~~~~~~~~~~p-~~~~~p~~~~~~~~~p~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 64 (823)
|...+|+|.-+.+..| ..|+-|++..+..+.|+| |++.|+.+..+...+.......++.+.+
T Consensus 181 ~a~~~~~plg~rl~~ps~tp~g~~~~~Sa~~n~s~s~~p~ssp~~a~~~~~rr~l~~~g~p~lpgp 246 (268)
T KOG0485|consen 181 GALRRPMPLGDRLWLPSLTPTGPTPITSAGLNPSPSAAPPSSPPTATGSAARRYLTSGGMPRLPGP 246 (268)
T ss_pred ccccCCCccccccccceecCCCCCcccccccCCCCcCCCCCCCCCcccchhhhhhccCCCCCCCCc
No 498
>PHA03417 E4 protein; Provisional
Probab=40.71 E-value=24 Score=28.82 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 003397 6 FPNRPVPPIRKKPSKPNPP 24 (823)
Q Consensus 6 ~~~~~~~~~~~~p~~~~~p 24 (823)
+||||+||++++|++|..+
T Consensus 37 tPPp~~p~P~~~p~ap~k~ 55 (118)
T PHA03417 37 TPPPLHRPPPLCPPAFQKN 55 (118)
T ss_pred CCCCCCCCCCCCCCCCCCC
No 499
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=40.61 E-value=4.6e+02 Score=27.55 Aligned_cols=458 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 003397 322 SLLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKGLMPNAVTYTTLIDAYGRAG 401 (823)
Q Consensus 322 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 401 (823)
++|.-|...|++.-|..-+.++-.....|- ++-..+-.+.-+..+-.+...++-...-..+......+..++..+...+
T Consensus 55 sii~eyfstgdv~vaa~dl~elg~seyhpy-fvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~d 133 (645)
T KOG0403|consen 55 SIIDEYFSTGDVVVAASDLKELGSSEYHPY-FVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESAD 133 (645)
T ss_pred HHHHHHccCCCchhhHHHHHHhccccccHH-HHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Q ss_pred C----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCCChhHH-----------------
Q 003397 402 K----VNKALRLLNKMKESGCAPNVCTYNAVLGMLGKKGRSEEMMKILCDMKSSGCSPNRITW----------------- 460 (823)
Q Consensus 402 ~----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~----------------- 460 (823)
+ +-.|..++.-...+.+..++..=..|-++---.-+..+..++.....+.-.......-
T Consensus 134 dl~vdipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEv 213 (645)
T KOG0403|consen 134 DLAVDIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEV 213 (645)
T ss_pred cceecCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHH
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003397 461 ----NTMLTMCGNKGLDKYVNQVFREMKSCGFEPDRDTFNTLISAYGRCGSGVDATKMFEDMMKTGFTPCVTTYNAFLNA 536 (823)
Q Consensus 461 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 536 (823)
+-++.-|...|+..+|.+..+++ ..+.......-+++...+.-..|.-+.-.+.+.+...+...-+.+..+
T Consensus 214 K~kIn~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kG 288 (645)
T KOG0403|consen 214 KNKINGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKG 288 (645)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccC
Q ss_pred HHHcCC--------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhCCCCChHHHHHHHHHHhh
Q 003397 537 LARRGD--------WKAAESVILDMQNKGFKPSETSFSLMLNCYAKGGNLKGIRKIEKEIYAGRIFPSWMLLRTLILVNF 608 (823)
Q Consensus 537 ~~~~g~--------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 608 (823)
+.+.+. ...|...|+.+.-+...-+...-+.+-..-...|+.+..+.+.+.+ ..++.-|+
T Consensus 289 fsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~------------~~IIqEYF 356 (645)
T KOG0403|consen 289 FSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDL------------TPIIQEYF 356 (645)
T ss_pred chhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhh------------HHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH---
Q 003397 609 KCRALQGMERAFQELQKHGYKPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWK--- 685 (823)
Q Consensus 609 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 685 (823)
..|+..+..+.++.+.-...+|-...+..-+..=.++...+.|-.++..+.-.-.. +...-+......-...+..-
T Consensus 357 lsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fs-teDv~~~F~mLLesaedtALD~p 435 (645)
T KOG0403|consen 357 LSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFS-TEDVEKGFDMLLESAEDTALDIP 435 (645)
T ss_pred hcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCC-HHHHHHHHHHHHhcchhhhcccc
Q ss_pred ----------HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------------HHH
Q 003397 686 ----------AEEILKGILKSGGTPDLVSYNTVIKGFCRQGLMQEAMRMLYEMTNRGIRPCI---------------FTY 740 (823)
Q Consensus 686 ----------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---------------~~~ 740 (823)
|+.+.+.++. +.+...+..-+..-......-+-.+.+-.|...|-+... .-.
T Consensus 436 ~a~~elalFlARAViDdVLa---p~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI 512 (645)
T KOG0403|consen 436 RASQELALFLARAVIDDVLA---PTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKI 512 (645)
T ss_pred ccHHHHHHHHHHHHhhcccc---cCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHH
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 003397 741 NTFVSGYAGQGMFTEIDEVIKHMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKERD 802 (823)
Q Consensus 741 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 802 (823)
..|+.-|...|++.+|.+.++++----+. ....+.+++-+.-+.|+-..-+.++++....+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
No 500
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.44 E-value=4.8e+02 Score=27.72 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC---CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 003397 614 QGMERAFQELQKH---GY-KPDLVIFNSMLSICAKNSMYDRANEMLHLILESGMQPNLVTYNNLMDMYARAGKCWKAEEI 689 (823)
Q Consensus 614 ~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 689 (823)
++...+++..... +. ..+......++... .|+...++.+++.+...+...+......++......
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~--------- 222 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAAR--------- 222 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhc---------
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----ChhHHHHHHH
Q 003397 690 LKGILKSGGTPDLVSYNTVIKGFCRQ---GLMQEAMRMLYEMTNRGIRPCIFTYNTFVSGYAGQG-----MFTEIDEVIK 761 (823)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 761 (823)
...+......++.++.+. ++.+.|+.++..|++.|..|....-..+..++...| ...-|...++
T Consensus 223 --------~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 223 --------YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred --------cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003397 762 HMFQHNCKPNELTYKIVVDGYCKARKYKEAMDFLSKIKE 800 (823)
Q Consensus 762 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 800 (823)
.....|+.--.......+-.++.+-+-+.+...++++.+
T Consensus 295 ~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 295 AVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Done!