BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003398
(823 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/802 (55%), Positives = 548/802 (68%), Gaps = 57/802 (7%)
Query: 28 LFQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESL-EVLHSAAASPG 86
+ QEGL+R A+L LSRPASCN + ++ + AG + + + LHS A +
Sbjct: 229 ILQEGLERDAALGSQLSRPASCNTFRDMKDAAVLSNFSAGGFDSPLAFHDSLHSTAKNS- 287
Query: 87 LVRTKSHNRIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGS 146
P+ S + S + R+ TP++ LVGRS+ SGLPP+G+RVG VEK G+
Sbjct: 288 ----------PNTMLGSTMSSPVPRNRTPDSHLVGRSTASGLPPIGTRVGPVEKKNTFGT 337
Query: 147 NVQN--DIELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQSM 204
+QN AD+A TLS L++S + E +H+QSQLQ+ +NQSD + NGH +++
Sbjct: 338 AIQNCESYTAADVADTLSRLNMSEMSQVKE-NHMQSQLQVELENQSDVMRYIPNGHKKAL 396
Query: 205 KQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTSSPNL------ 258
+QQ + T D+L FS +Y + G +L AS + S+GQVNI KRTSS
Sbjct: 397 RQQNTAE-TKDHL-FSANYGGMS---GYGASLGASTVGSHGQVNIPKRTSSSASLYSTSD 451
Query: 259 YSKMNSTGFGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHF----DTVGIG 314
+S++ S G S +N NI+ DF+ +G Y KLNSL H+ G G
Sbjct: 452 HSRLGSVGL-----SDVNIRNGNINGTDFS-TAGGYMAKNKLNSLAEHYSAEGSHLTGDG 505
Query: 315 ATRNLNGMVNQVALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDS 374
++LN ++NQVA + HSP MDP Y+QYL S S A+ D RN+FG+S GD+
Sbjct: 506 DRQSLNRLINQVASELHSPVMDPHYSQYLHTAS-----STAAPIDHSLIRNNFGTSNGDT 560
Query: 375 DGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLPSVG 434
+L +LLAQ QQ LG ++E+ Y L Y GN +P S
Sbjct: 561 ---ANEYLAMLLAQNRQQ-----LGNLNAANSRFFESPSYDLGNMYLGNHLPSP---SKN 609
Query: 435 SGSFPNERNSRFTSMMRSSMGGPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDI 493
S +F N R S+ SMM+ GG H+D G E +SLL+ FK NKTRS ELS+I
Sbjct: 610 SRNFQNMRMSQSASMMKVPFGGLQGSSHVDIGSTAE----ASLLEGFKNNKTRSLELSEI 665
Query: 494 VDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHG 553
V HV+EFS DQYGSRFIQQKLE AT EEK IFPEI+P+ RTLMTDVFGNYVIQKFFEHG
Sbjct: 666 VGHVIEFSMDQYGSRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHG 725
Query: 554 TESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQN 613
T QR +LA Q+TGHVL LSLQMYGCRVIQKALEVV ++QQ +MV ELDGSVMKCVHDQN
Sbjct: 726 TTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGSVMKCVHDQN 785
Query: 614 GNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDE 673
GNHVIQKCIE +PQD IQFIISSFYG+V+ALSTHPYGCRVIQRVLEH DD TQ+IIM+E
Sbjct: 786 GNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEE 845
Query: 674 IMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 733
IM VC LAQDQYGNYVIQH+++HGKPHER+ +I +LAGQIV+MSQQKFASNVVEKCLTF
Sbjct: 846 IMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKMSQQKFASNVVEKCLTF 905
Query: 734 GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLN 793
G PEERQ+L+NEMLG TDENEPLQAMMKDPFGNYVVQKVLETCDDQSL LILSRI+VHLN
Sbjct: 906 GGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLN 965
Query: 794 VLKKYTYGKHIVSRIEKLIATG 815
LK+YTYGKHIV+R+EKLI TG
Sbjct: 966 ALKRYTYGKHIVARVEKLITTG 987
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 626 bits (1614), Expect = e-178, Method: Compositional matrix adjust.
Identities = 381/815 (46%), Positives = 499/815 (61%), Gaps = 86/815 (10%)
Query: 28 LFQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGL 87
+FQ + ++ SRPAS N + E V D++ S + ++ + A SP
Sbjct: 198 IFQADMGHGHPVAQQPSRPASRNTFDENV-----DSNNNLSPSASQGI-----GAPSP-- 245
Query: 88 VRTKSHNRIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGS-RVGAVEKNGAVGS 146
+S+A+ +GSSLSR+ TP+ Q + R L P+GS R+ + +K
Sbjct: 246 -----------YSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGSGRMSSNDKRNTSNQ 294
Query: 147 NVQNDI-----ELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHN 201
+ N + E +D+ LSGL+LS D+ +SQ + + + ++++ GHN
Sbjct: 295 SPFNGVTSGLNESSDLVNALSGLNLSCSVGLDD----RSQAEQDVEKVRNYMFGLQGGHN 350
Query: 202 QSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSN-GQVNILKRTSSPNL-- 258
+ + +F +KS H + +N + + SA N G N ++ SPN
Sbjct: 351 EVNQHEFPNKSD------QAHKATGSLRNSQLRGPHGSAYNGGVGLANPYQQLDSPNYCL 404
Query: 259 --YSKMNSTGFGGSSRSVGRQQNA----NISSLDFTNVSGDYSVNQKLNSLVNHHFDTVG 312
Y+ +N + +G A N+S+L F+ + + ++S N
Sbjct: 405 NNYA-LNPAVASMMANQLGNNNFAPMYDNVSALGFSGMDSRHHGRGFVSSGQN------- 456
Query: 313 IGATRNLNGMVNQV---ALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFG- 368
+ +RNL N++ S +DP Y QY S +DP RN G
Sbjct: 457 LSESRNLGRFSNRMMGGGAGLQSHMVDPMYNQY--------ADSLDLLNDPSMDRNFMGG 508
Query: 369 SSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPG---YYETQPYRLDMQYSGNTF 425
SS D LQ+A+L Q Q+ + KSG P YY + + +M Y G+
Sbjct: 509 SSYMDMLELQRAYL----GAQKSQYGVPY--KSGS--PNSHSYYGSPTFGSNMSYPGSPL 560
Query: 426 ANPVLP-SVGSGSFP---NERNSRFTSMMRSSMGGPM-PWHLDAGINMEGRLSSSLLDEF 480
A+ +P S+ S P +E N RF S R+ GG M WH+DA + EG SS+L+EF
Sbjct: 561 AHHGMPNSLMSPYSPMRRDEVNMRFPSATRNYSGGLMGSWHMDASFD-EG-FGSSMLEEF 618
Query: 481 KTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDV 540
K+NKTR FELS+I HVVEFS+DQYGSRFIQQKLE AT +EK ++ EI+P A LMTDV
Sbjct: 619 KSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPQALVLMTDV 678
Query: 541 FGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAE 600
FGNYVIQKFFEHG QR +LA +L HVL LSLQMYGCRVIQKA+EVV +DQ+ +MV E
Sbjct: 679 FGNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKE 738
Query: 601 LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEH 660
LDG VM+CV DQNGNHV+QKCIEC+P++ I+FIIS+F+G VV LSTHPYGCRVIQRVLEH
Sbjct: 739 LDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEH 798
Query: 661 CDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQ 720
C D +TQ +M+EI+ V LAQDQYGNYV+QHVLEHGKP ERT +I +LAG+IV+MSQQ
Sbjct: 799 CHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQ 858
Query: 721 KFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQS 780
KFASNVVEKCLTFG PEER+LL+NEMLG+TDENEPLQAMMKD F NYVVQKVLETCDDQ
Sbjct: 859 KFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQ 918
Query: 781 LELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATG 815
ELIL+RI+VHL LKKYTYGKH+V+RIEKL+A G
Sbjct: 919 RELILTRIKVHLTALKKYTYGKHVVARIEKLVAAG 953
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 486 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA------RTLMTD 539
R+ + ++ +V+ S ++ S +++ L EE+ + E++ + +M D
Sbjct: 841 RTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKD 900
Query: 540 VFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 599
F NYV+QK E + QR + +++ H+ L YG V+ + ++V ++ +
Sbjct: 901 QFANYVVQKVLETCDDQQRELILTRIKVHLTALKKYTYGKHVVARIEKLVAAGERRMALQ 960
Query: 600 EL 601
L
Sbjct: 961 SL 962
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 376/806 (46%), Positives = 496/806 (61%), Gaps = 70/806 (8%)
Query: 28 LFQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGL 87
+FQ + P + SRPAS N + E V D++ S + ++ + A SP
Sbjct: 196 IFQADMGHP--VVQQPSRPASRNTFDENV-----DSNNNLSPSASQGI-----GAPSP-- 241
Query: 88 VRTKSHNRIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGS-RVGAVEKNGAVGS 146
+ +A+ +GSSLSR+ TP+ Q + R L P+GS RV + +K
Sbjct: 242 -----------YCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQ 290
Query: 147 NVQNDI-----ELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHN 201
+ N + E +D+ LSGL+LS DE + Q + + + ++++ +GHN
Sbjct: 291 SPFNGVTSGLNESSDLVNALSGLNLSGTGGLDE----RGQAEQDVEKVRNYMFGLQDGHN 346
Query: 202 QSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINS-NGQVNILKRTSSPNLYS 260
+ F ++S S +N + SA NS +G N + SPN Y+
Sbjct: 347 EVNPHGFPNRSDQARGTASC-------RNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYA 399
Query: 261 KMNSTGFGGSSRSVGRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVG--IGATRN 318
+N + + Q N S + N S + + L F + G + +RN
Sbjct: 400 -LNPA----VASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGGSFVSSGQNLSESRN 454
Query: 319 LNGMVNQVALDFHSPP---MDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSD 375
+ + N++ P DP Y QY R S+ A S +DP RN +G+S +
Sbjct: 455 IGRVGNRMMEGGTGHPSHLADPMYHQYA-RFSENAD-SFDLLNDPSMDRN-YGNSYMNML 511
Query: 376 GLQKAHLELLLAQQNQQHEMQLLGKSGGLFP-GYYETQPYRLDMQYSGNTFANPVLP-SV 433
+Q+A+L +Q+ + L KSG YY + + +M Y G+ A+ +P S+
Sbjct: 512 EIQRAYL------GSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSL 565
Query: 434 GSGSFPNER---NSRFTSMMRSSMGGPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSFE 489
S P R N R+ + R+ GG M WH+DA ++ EG SS+L+EFK+NKTR FE
Sbjct: 566 MSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLD-EG-FGSSMLEEFKSNKTRGFE 623
Query: 490 LSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKF 549
LS+I HVVEFS+DQYGSRFIQQKLE AT +EK ++ EI+P A LMTDVFGNYVIQKF
Sbjct: 624 LSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKF 683
Query: 550 FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCV 609
FEHG QR +L +L +VL LSLQMYGCRVIQKA+EVV +DQ+ QMV ELDG VM+CV
Sbjct: 684 FEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKAIEVVDLDQKIQMVKELDGHVMRCV 743
Query: 610 HDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQI 669
DQNGNHV+QKCIEC+P++ I+FIIS+F+G VV LSTHPYGCRVIQRVLEHC + +TQ
Sbjct: 744 RDQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSK 803
Query: 670 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 729
+M+EI+ V L QDQYGNYV+QHVLEHGKP ERT +I +LAG+IV+MSQQKFASNVVEK
Sbjct: 804 VMEEILSTVSMLTQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEK 863
Query: 730 CLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIR 789
CLTFG PEER+LL+NEMLG+TDENEPLQAMMKD F NYVVQKVLETCDDQ ELIL+RI+
Sbjct: 864 CLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILTRIK 923
Query: 790 VHLNVLKKYTYGKHIVSRIEKLIATG 815
VHLN LKKYTYGKHIV+R+EKL+A G
Sbjct: 924 VHLNALKKYTYGKHIVARVEKLVAAG 949
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 486 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA------RTLMTD 539
R+ + ++ +V+ S ++ S +++ L EE+ + E++ + +M D
Sbjct: 837 RTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKD 896
Query: 540 VFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 599
F NYV+QK E + QR + +++ H+ L YG ++ + ++V ++ +
Sbjct: 897 QFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQ 956
Query: 600 EL 601
L
Sbjct: 957 SL 958
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 615 bits (1585), Expect = e-175, Method: Compositional matrix adjust.
Identities = 377/807 (46%), Positives = 485/807 (60%), Gaps = 74/807 (9%)
Query: 28 LFQEGLDRPASLSGHLSRPASCNAYGEIVGTGIADAHRAGSCNGAESLEVLHSAAASPGL 87
+FQ + ++ SRPAS N + E V D+ S + ++ + A SP
Sbjct: 206 IFQADMGHGHPVTKQPSRPASRNTFDENV-----DSKNNLSPSASQGI-----GAPSP-- 253
Query: 88 VRTKSHNRIPSHSFASAVGSSLSRSTTPEAQLVGRSSGSGLPPVGSRVGAVEKNGAVGSN 147
+S+A+ +GSSLSR+ TP+ Q + R L P+GS G V N ++
Sbjct: 254 -----------YSYAAVLGSSLSRNGTPDPQAIARVPSPCLTPIGS--GRVSSNDKRNTS 300
Query: 148 VQNDI-----ELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDTSNGHNQ 202
Q+ E +D+ LSG++LS DE + Q + + + ++++ GHN+
Sbjct: 301 NQSPFNGGLNESSDLVNALSGMNLSGSGGLDE----RGQAEQDVEKVRNYMFGLQGGHNE 356
Query: 203 SMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNI-LKRTSSPNLYSK 261
+ F +KS D +T + +N + S N G V + SPN
Sbjct: 357 VNQHGFPNKS--DQAQKATGLL----RNSQLRGAQGSTYNDGGGVATQYQHLDSPNYC-- 408
Query: 262 MNSTGFGGSSRSV-GRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVGIG----AT 316
+N+ G + S+ Q N S + N S ++ H V G +
Sbjct: 409 LNNYGLNPAVASMMANQLGTNNYSPVYENASAASAMGFSGMDSRLHGGGYVSSGQNLSES 468
Query: 317 RNLNGMVNQV---ALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGD 373
RNL N++ S DP Y QY S +DP N G+S +
Sbjct: 469 RNLGRFSNRMMGGGTGLQSHMADPMYHQY--------ADSLDLLNDPSMDVNFMGNSYMN 520
Query: 374 SDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTFANPVLP-S 432
LQ+A+L Q Q+ + KSG P + Y G+ A+ +LP S
Sbjct: 521 MLELQRAYL----GAQKSQYGVPY--KSGS--PNSHTDYGSPTFGSYPGSPLAHHLLPNS 572
Query: 433 VGSGSFPNER---NSRFTSMMRSSMGGPM-PWHLDAGINMEGRLSSSLLDEFKTNKTRSF 488
+ S P R N R+ S R+ GG M WH+DA ++ EG SS+L+EFK+NKTR F
Sbjct: 573 LVSPCSPMRRGEVNMRYPSATRNYAGGVMGSWHMDASLD-EG-FGSSMLEEFKSNKTRGF 630
Query: 489 ELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQK 548
EL++I HVVEFS+DQYGSRFIQQKLE AT++EK ++ EI+PHA LMTDVFGNYVIQK
Sbjct: 631 ELAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQK 690
Query: 549 FFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKC 608
FFEHG QR +LA +L +VL LSLQMYGCRVIQKA+EVV +DQ+ +MV ELDG VM+C
Sbjct: 691 FFEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRC 750
Query: 609 VHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQ 668
V DQNGNHV+QKCIEC+P++ I+FIIS+F+G VV LSTHPYGCRVIQRVLEHC D +TQ
Sbjct: 751 VRDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQS 810
Query: 669 IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVE 728
+MDEIM + LAQDQYGNYVIQHVLEHGKP ERT +I +LAG+IV+MSQQKFASNVVE
Sbjct: 811 KVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVE 870
Query: 729 KCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRI 788
KCLTFG PEER+ L+NEMLG+TDENEPLQAMMKD F NYVVQKVLETCDDQ ELIL RI
Sbjct: 871 KCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILGRI 930
Query: 789 RVHLNVLKKYTYGKHIVSRIEKLIATG 815
+VHLN LKKYTYGKHIV+R+EKL+A G
Sbjct: 931 KVHLNALKKYTYGKHIVARVEKLVAAG 957
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 486 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA------RTLMTD 539
R+ + ++ +V+ S ++ S +++ L EE+ + E++ + +M D
Sbjct: 845 RTVIIKELAGKIVQMSQQKFASNVVEKCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKD 904
Query: 540 VFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 599
F NYV+QK E + QR + ++ H+ L YG ++ + ++V ++ +
Sbjct: 905 QFANYVVQKVLETCDDQQRELILGRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMALQ 964
Query: 600 EL 601
L
Sbjct: 965 SL 966
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/415 (55%), Positives = 284/415 (68%), Gaps = 10/415 (2%)
Query: 408 YYETQP-YRLDMQYSGNTFANPVLPSVGSGS----FPNERNSRFTSMMRSSMGGPMP--W 460
Y+ P R+ QY G+ A+PV+PS G F +R+ S G P W
Sbjct: 534 YFAVPPGVRVMPQYPGSPLASPVMPSSPVGGMMSHFGRRSETRYHQQGPSRNTGIYPGGW 593
Query: 461 HLDAGIN---MEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAA 517
+ G ++ S LDE K+ R ELSDI VVEFS DQ+GSRFIQQKLE
Sbjct: 594 QGNRGGASSIVDDLKRHSFLDELKSPNARKLELSDIAGRVVEFSVDQHGSRFIQQKLEHC 653
Query: 518 TAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMY 577
+ EEK +F E++P A LMTDVFGNYVIQKF EHGT +QR +L QL G ++ LSLQMY
Sbjct: 654 SDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMY 713
Query: 578 GCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSF 637
GCRVIQKALEV+ VDQ+T+++ ELDG+V+KCV DQNGNHVIQKCIE +P RI F+I++F
Sbjct: 714 GCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGNHVIQKCIESMPAGRIGFVIAAF 773
Query: 638 YGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEH 697
GQV LSTHPYGCRVIQR+LEHC D I+DEI++ LA DQYGNYV QHVLE
Sbjct: 774 RGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLER 833
Query: 698 GKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQ 757
GKP ER +I +L G +V+MSQ K+ASNVVEKCL ER+ LI E++G ++E+ L
Sbjct: 834 GKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLL 893
Query: 758 AMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLI 812
AMMKD F NYVVQKVLE DQ E+++ R+++HL L+KYTYGKHIV+R E+L
Sbjct: 894 AMMKDQFANYVVQKVLEISKDQQREILVQRMKIHLQSLRKYTYGKHIVARFEQLF 948
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/506 (47%), Positives = 303/506 (59%), Gaps = 40/506 (7%)
Query: 312 GIGATRNLNGMVNQVALDFHSPP-----MDPRYAQYLQRTSDYATRSAASASDPFAARNH 366
G A ++G Q A + PP DP Y QY Q++ +P A RNH
Sbjct: 378 GPSAGSVVHGGEMQYAEKLYVPPGQPSFPDPMYMQYCQQS--------FGQMEPLAPRNH 429
Query: 367 FGSSLGDSDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQP-YRLDMQYSGNTF 425
+ D L + N +G + YY QP + +QY
Sbjct: 430 TNAPESQKD--DPKFLRQIRGPSNSNMARPGMGVN------YYGIQPNMGIMVQYLPTHL 481
Query: 426 ANPVLPSVGSGSFPNERNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKT 485
P+ P G P + G P G N G + L+E K+ K
Sbjct: 482 GPPLSP----GHVP----------YVEAYPGWQPQGSLEGAN--GPRLCNFLEELKSGKG 525
Query: 486 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYV 545
R F+LSDI H+VEFS DQ+GSRFIQQKLE EEK +F EI+PHA LMTDVFGNYV
Sbjct: 526 RRFDLSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYV 585
Query: 546 IQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSV 605
IQKFFE+G +QR +LA QL G ++ LSLQMYGCRVIQKAL+V+ DQ+ ++ ELDG V
Sbjct: 586 IQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQV 645
Query: 606 MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN 665
M+CV DQNGNHVIQKCIE IP D++ F++ +F GQV +LS HPYGCRVIQR+LE C +
Sbjct: 646 MRCVRDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDH 705
Query: 666 TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASN 725
+ I +EI++ VC L++DQYGNYV QHVLE G ER + +L+G IV++S KFASN
Sbjct: 706 QCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLHKFASN 765
Query: 726 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCD-DQSLELI 784
V+EKCL +G ER L+I E+ G + L MMKD +GNYVVQK+ ETC DQ L L
Sbjct: 766 VIEKCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTL- 824
Query: 785 LSRIRVHLNVLKKYTYGKHIVSRIEK 810
SR+R+H + LKKYTYGKHIVSR+E+
Sbjct: 825 FSRVRMHASALKKYTYGKHIVSRLEQ 850
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 488 FELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTR-IFPEIIPHARTLMTDVFGNYVI 546
F L V S YG R IQ+ LE + + + R I EI+ L D +GNYV
Sbjct: 672 FMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVT 731
Query: 547 QKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG--- 603
Q E GT +R ++ +L+GH+++LSL + VI+K LE ++ ++ E+ G
Sbjct: 732 QHVLEKGTSEERERIGRKLSGHIVQLSLHKFASNVIEKCLEYGGRVERDLIIKEIAGPDE 791
Query: 604 ---SVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEH 660
S++ + DQ GN+V+QK E D+ + S AL + YG ++ R+ +
Sbjct: 792 SYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRVRMHASALKKYTYGKHIVSRLEQP 851
Query: 661 CDDANTQ 667
+ N +
Sbjct: 852 SIEENQE 858
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 255/340 (75%), Gaps = 4/340 (1%)
Query: 474 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 533
S LL++F+ N+ + +L D++ H+VEFS DQ+GSRFIQQKLE AT E+ +F EI+ A
Sbjct: 708 SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAA 767
Query: 534 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 593
LMTDVFGNYVIQKFFE G+ Q+ LA+++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 768 YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 827
Query: 594 Q--TQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGC 651
Q ++MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV LSTHPYGC
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGC 887
Query: 652 RVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 711
RVIQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ +++++
Sbjct: 888 RVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 712 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQ 770
G+++ +SQ KFASNVVEKC+T S ER LLI+E+ D + L MMKD + NYVVQ
Sbjct: 947 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQ 1006
Query: 771 KVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 810
K+++ + ++I+ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1007 KMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 707 ITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGN 766
+ L G IV SQ + S +++ L +P ERQ++ NE+L + + +M D FGN
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQ------LMTDVFGN 777
Query: 767 YVVQKVLETCD-DQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIAT 814
YV+QK E DQ L L +RIR H+ L YG ++ + + I++
Sbjct: 778 YVIQKFFEFGSLDQKLALA-TRIRGHVLPLALQMYGCRVIQKALESISS 825
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 255/340 (75%), Gaps = 4/340 (1%)
Query: 474 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 533
S LL++F+ N+ + +L D++ H+VEFS DQ+GSRFIQQKLE AT E+ +F EI+ A
Sbjct: 708 SRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAA 767
Query: 534 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 593
LMTDVFGNYVIQKFFE G+ Q+ LA+++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 768 YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 827
Query: 594 Q--TQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGC 651
Q ++MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV LSTHPYGC
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGC 887
Query: 652 RVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 711
RVIQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ +++++
Sbjct: 888 RVIQRILEHCTAEQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 712 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQ 770
G+++ +SQ KFASNVVEKC+T S ER LLI+E+ D + L MMKD + NYVVQ
Sbjct: 947 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQ 1006
Query: 771 KVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 810
K+++ + ++I+ +IR H+ L+KYTYGKHI++++EK
Sbjct: 1007 KMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEK 1046
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 707 ITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGN 766
+ L G IV SQ + S +++ L +P ERQ++ NE+L + + +M D FGN
Sbjct: 724 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQ------LMTDVFGN 777
Query: 767 YVVQKVLETCD-DQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIAT 814
YV+QK E DQ L L +RIR H+ L YG ++ + + I++
Sbjct: 778 YVIQKFFEFGSLDQKLALA-TRIRGHVLPLALQMYGCRVIQKALESISS 825
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 252/337 (74%), Gaps = 3/337 (0%)
Query: 474 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 533
S LL++F+ + + +L D+ +H+VEFS DQ+GSRFIQQKLE ATA EK +F EI+ A
Sbjct: 1093 SRLLEDFRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAA 1152
Query: 534 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 593
+LMTDVFGNYVIQKFFE GT Q+ L Q+ GHVL+L+LQMYGCRVIQKALE + +Q
Sbjct: 1153 YSLMTDVFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQ 1212
Query: 594 QTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRV 653
Q ++V ELDG V+KCV DQNGNHV+QKCIEC+ +QFII++F GQV +LSTHPYGCRV
Sbjct: 1213 QQEIVHELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRV 1272
Query: 654 IQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQ 713
IQR+LEHC T I+ DE+ +H L QDQYGNYVIQHVLEHGK +++ +I + G+
Sbjct: 1273 IQRILEHCTAEQTTPIL-DELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGK 1331
Query: 714 IVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVL 773
++ +SQ KFASNVVEKC+T + ER LI+E+ T + L MMKD + NYVVQK++
Sbjct: 1332 VLVLSQHKFASNVVEKCVTHATRGERTGLIDEVC--TFNDNALHVMMKDQYANYVVQKMI 1389
Query: 774 ETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEK 810
+ + L+ ++++IR H+ L+KYTYGKHI +++EK
Sbjct: 1390 DVSEPTQLKKLMTKIRPHMAALRKYTYGKHINAKLEK 1426
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/344 (54%), Positives = 250/344 (72%), Gaps = 2/344 (0%)
Query: 474 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 533
S LL++F+ N+ + +L +I H++EFS DQ+GSRFIQ KLE AT E+ +F EI+ A
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 889
Query: 534 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 593
LM DVFGNYVIQKFFE G+ Q+ LA ++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 890 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 949
Query: 594 QTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRV 653
Q +MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV ALSTHPYGCRV
Sbjct: 950 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1009
Query: 654 IQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQ 713
IQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ ++ ++ G
Sbjct: 1010 IQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1068
Query: 714 IVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQKV 772
++ +SQ KFASNVVEKC+T S ER +LI+E+ D + L MMKD + NYVVQK+
Sbjct: 1069 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1128
Query: 773 LETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGG 816
++ + ++++ +IR H+ L+KYTYGKHI++++EK G
Sbjct: 1129 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNG 1172
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/344 (54%), Positives = 250/344 (72%), Gaps = 2/344 (0%)
Query: 474 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 533
S LL++F+ N+ + +L +I H++EFS DQ+GSRFIQ KLE AT E+ +F EI+ A
Sbjct: 830 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAA 889
Query: 534 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 593
LM DVFGNYVIQKFFE G+ Q+ LA ++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 890 YQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 949
Query: 594 QTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRV 653
Q +MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV ALSTHPYGCRV
Sbjct: 950 QNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1009
Query: 654 IQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQ 713
IQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ ++ ++ G
Sbjct: 1010 IQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGN 1068
Query: 714 IVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQKV 772
++ +SQ KFASNVVEKC+T S ER +LI+E+ D + L MMKD + NYVVQK+
Sbjct: 1069 VLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKM 1128
Query: 773 LETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGG 816
++ + ++++ +IR H+ L+KYTYGKHI++++EK G
Sbjct: 1129 IDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNG 1172
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/346 (54%), Positives = 251/346 (72%), Gaps = 4/346 (1%)
Query: 474 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 533
S LL++F+ N+ + +L +I H++EFS DQ+GSRFIQ KLE ATA E+ +F EI+ A
Sbjct: 831 SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAA 890
Query: 534 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ 593
LM DVFGNYVIQKFFE G+ Q+ LA ++ GHVL L+LQMYGCRVIQKALE + DQ
Sbjct: 891 YQLMVDVFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ 950
Query: 594 QT--QMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGC 651
Q +MV ELDG V+KCV DQNGNHV+QKCIEC+ +QFII +F GQV ALSTHPYGC
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGC 1010
Query: 652 RVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 711
RVIQR+LEHC T I++E+ QH L QDQYGNYVIQHVLEHG+P +++ ++ ++
Sbjct: 1011 RVIQRILEHCLPDQTLP-ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 712 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTD-ENEPLQAMMKDPFGNYVVQ 770
G ++ +SQ KFASNVVEKC+T S ER +LI+E+ D + L MMKD + NYVVQ
Sbjct: 1070 GNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQ 1129
Query: 771 KVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGG 816
K+++ + ++++ +IR H+ L+KYTYGKHI++++EK G
Sbjct: 1130 KMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKYYMKNG 1175
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/373 (52%), Positives = 259/373 (69%), Gaps = 15/373 (4%)
Query: 447 TSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYG 506
+S +R M MP GR S LL++F+ N+ + +L +I H++EFS DQ+G
Sbjct: 815 SSRLRYGMSDVMP---------SGR--SRLLEDFRNNRYPNLQLREIAGHIMEFSQDQHG 863
Query: 507 SRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLT 566
SRFIQ KLE AT E+ +F EI+ A LM DVFGNYVIQKFFE G+ Q+ LA ++
Sbjct: 864 SRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIR 923
Query: 567 GHVLRLSLQMYGCRVIQKALEVVHVDQQT--QMVAELDGSVMKCVHDQNGNHVIQKCIEC 624
GHVL L+LQMYGCRVIQKALE + DQQ +MV ELDG V+KCV DQNGNHV+QKCIEC
Sbjct: 924 GHVLSLALQMYGCRVIQKALEFIPPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIEC 983
Query: 625 IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQD 684
+ +QFII +F GQV ALSTHPYGCRVIQR+LEHC T I++E+ QH L QD
Sbjct: 984 VQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLP-ILEELHQHTEQLVQD 1042
Query: 685 QYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLIN 744
QYGNYVIQHVLEHG+P +++ ++ ++ G ++ +SQ KFASNVVEKC+T S ER +LI+
Sbjct: 1043 QYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLID 1102
Query: 745 EMLGSTD-ENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKH 803
E+ D + L MMKD + NYVVQK+++ + ++++ +IR H+ L+KYTYGKH
Sbjct: 1103 EVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPAQRKIVMHKIRPHIATLRKYTYGKH 1162
Query: 804 IVSRIEKLIATGG 816
I++++EK G
Sbjct: 1163 ILAKLEKYYMKNG 1175
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 356 bits (913), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 168/340 (49%), Positives = 237/340 (69%), Gaps = 4/340 (1%)
Query: 474 SSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA 533
S +L F NK R FELSDI+ +VV FSTDQ+GSRFIQQKL AT EE+ +F EI +
Sbjct: 378 SRVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTS 437
Query: 534 -RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVD 592
LM D+FGNYV+QK+FE G E Q+ L SQ+ GHV LSLQMYGCRV+QKA+E + +
Sbjct: 438 CLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPE 497
Query: 593 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 652
Q Q++ ELDG V+ CV DQNGNHVIQK IECI +QFI+ + Q+ LS HPYGCR
Sbjct: 498 HQVQLIQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCR 557
Query: 653 VIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG 712
VIQR +EHC + +++I++E++ H+ L QDQYGNYV+QH+L G ++ + +
Sbjct: 558 VIQRAIEHCH--SERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMID 615
Query: 713 QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDEN-EPLQAMMKDPFGNYVVQK 771
++ +S KFASNVVE+C+++ S +R+ ++N+++ EN L MMKD + NYV+QK
Sbjct: 616 HLLFLSCHKFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQK 675
Query: 772 VLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKL 811
+L+ ++ +L++S I H++VLKK+TYGKH++ +E+
Sbjct: 676 LLDASPEEERDLLISYIYPHISVLKKFTYGKHLIMSVERF 715
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 702 ERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMK 761
+R ++ + G +V S + S +++ L + EER+ + E+ ++ LQ MM
Sbjct: 389 QRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSC----LQLMM- 443
Query: 762 DPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIA 813
D FGNYVVQK E +++ +++LS+I+ H+ L YG +V + + I+
Sbjct: 444 DIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYIS 495
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 218/338 (64%), Gaps = 15/338 (4%)
Query: 490 LSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKF 549
L DI H +EF DQ+GSRFIQ++L + A EK IF EI A L DVFGNYVIQKF
Sbjct: 536 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKF 595
Query: 550 FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCV 609
FE G++ Q+ L Q G++ +LSLQMY CRVIQKALE + +Q+ ++V EL SV++ +
Sbjct: 596 FEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMI 655
Query: 610 HDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQI 669
DQNGNHVIQK IE IP +++ FI+SS G + LSTH YGCRVIQR+LE + Q+
Sbjct: 656 KDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSED-QES 714
Query: 670 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTV------ITQLAGQIVRMSQQKFA 723
I++E+ + L QDQYGNYVIQ+VL+ + + V I +A +V S+ KFA
Sbjct: 715 ILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFA 774
Query: 724 SNVVEKCLTFGSPEERQLLINEMLG-------STDENEPLQAMMKDPFGNYVVQKVLETC 776
SNVVEK + +GS ++ L+I+++L + +++ P+ M+KD F NYV+QK++
Sbjct: 775 SNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVS 834
Query: 777 DDQSLELILSRIRVHLNVLKKY-TYGKHIVSRIEKLIA 813
+ + +LI+ IR +L+ L K + G ++ +EKL A
Sbjct: 835 EGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAA 872
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 181/316 (57%), Gaps = 6/316 (1%)
Query: 496 HVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTE 555
+++ F DQ+G R++Q+ LE +F E P+ LM D FGNY+ QK FEH +E
Sbjct: 347 NILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASE 406
Query: 556 SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVV-HVDQQTQMVAELDGSVMKCVHDQNG 614
+QR+ + ++ +S M+G R +QK +++V DQ + +V L +V+ D NG
Sbjct: 407 AQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNALRPNVVLLTKDLNG 466
Query: 615 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEI 674
NHVIQKC+ Q+ QFI + + +STH +GC V+QR +H A +Q++ + I
Sbjct: 467 NHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLV-EHI 525
Query: 675 MQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG 734
+ H L QD +GNYV+Q+VLE P+ +I+ ++ +S QKF+SNV+EKC+ F
Sbjct: 526 VPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIFFA 585
Query: 735 SPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNV 794
++ LI+E++ DE L +++D F NYV+Q L+ + ++ RI+ +
Sbjct: 586 PAAIKEKLISELM---DEKH-LPKLLRDSFANYVIQTALDNASVKQRAELVERIKPLIPS 641
Query: 795 LKKYTYGKHIVSRIEK 810
+K G+ I+S++E+
Sbjct: 642 IKNTPCGRRILSKLER 657
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 178/323 (55%), Gaps = 11/323 (3%)
Query: 489 ELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQK 548
++S+ +V + DQ+G RF+Q E +A + IF E+IPH LM D FGNY++QK
Sbjct: 195 KVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQK 254
Query: 549 FFEHGTESQRAQLASQLT---GHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV-AELDGS 604
+ E QR Q+ +T G ++R+SL YG RV+Q+ +E + +Q +V + L
Sbjct: 255 LLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPG 314
Query: 605 VMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDA 664
+ + D NGNHVIQ+C++C+ + +FI + ++TH +GC V+Q+ + +
Sbjct: 315 FLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGL 374
Query: 665 NTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFAS 724
++++ EI ++ LAQD YGNY +Q VLE ++ QL G V +S QKF+S
Sbjct: 375 QREKLVT-EISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSS 433
Query: 725 NVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELI 784
++VE+CLT PE R ++ E++ +++DP+ N+V+Q L +
Sbjct: 434 HMVERCLTH-CPESRPQIVRELISVPH----FDILIQDPYANFVIQAALAVTKGSLHATL 488
Query: 785 LSRIRVHLNVLKKYTYGKHIVSR 807
+ IR H ++L+ Y K I SR
Sbjct: 489 VEVIRPH-SILRNNPYCKRIFSR 510
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 471 RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEII 530
R+ L++ KT K S S + + D G+ IQ+ L+ + E+ IF +
Sbjct: 289 RVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDAT 348
Query: 531 PHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVH 590
+ T G V+QK + + QR +L ++++ + L L+ YG +Q LE+
Sbjct: 349 KFCIDIATHRHGCCVLQKCIAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRD 408
Query: 591 VDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFI---ISSFYGQVVALSTH 647
M+A+L G ++ + +H++++C+ P+ R Q + IS + + L
Sbjct: 409 FSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDI--LIQD 466
Query: 648 PYGCRVIQRVL 658
PY VIQ L
Sbjct: 467 PYANFVIQAAL 477
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 700 PHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAM 759
P+E +++ G + M++ + ++ GS + ++ +E++ E +
Sbjct: 189 PNESLPKVSEFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVE------L 242
Query: 760 MKDPFGNYVVQKVLETC-DDQSLELIL-------SRIRVHLNVLKKYTYGKHIVSRIEKL 811
M DPFGNY++QK+L+ C ++Q ++IL IR+ LN YG +V R+ +
Sbjct: 243 MMDPFGNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLN-----AYGTRVVQRLVES 297
Query: 812 IATGGEGSL 820
I T + SL
Sbjct: 298 IKTRKQISL 306
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 180/322 (55%), Gaps = 11/322 (3%)
Query: 490 LSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKF 549
+ DI +V + DQ+G RF+Q+ + T+ + IF E+I H LM D FGNY++QK
Sbjct: 331 MCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKL 390
Query: 550 FEHGTESQRAQL---ASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA-ELDGSV 605
+ TE QR Q+ A++ G ++R+SL YG RV+Q+ +E + +Q +V L
Sbjct: 391 LDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGF 450
Query: 606 MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN 665
+ + D NGNHVIQ+C++C+ + +FI + ++TH +GC V+Q+ + +
Sbjct: 451 LDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQ 510
Query: 666 TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASN 725
+++I EI ++ LAQD +GNY +Q V+E P ++ QL G V++S QKF+S+
Sbjct: 511 REKLIA-EISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSH 569
Query: 726 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELIL 785
+VE+CL PE R ++ E++ ++ LQ DP+ N+V+Q L ++
Sbjct: 570 MVERCL-MHCPESRPQIVRELVSVPHFDQLLQ----DPYANFVIQAALAATKGPLHASLV 624
Query: 786 SRIRVHLNVLKKYTYGKHIVSR 807
IR H ++L+ Y K I SR
Sbjct: 625 EVIRPH-SILRNNPYCKRIFSR 645
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 74/163 (45%)
Query: 471 RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEII 530
R+ L++ ++ K S + ++ D G+ IQ+ L+ + E+ IF
Sbjct: 424 RVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAAT 483
Query: 531 PHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVH 590
+ T G V+QK + QR +L ++++ + L L+ +G +Q +E+
Sbjct: 484 KFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRI 543
Query: 591 VDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFI 633
M+A+L G ++ + +H++++C+ P+ R Q +
Sbjct: 544 PSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIV 586
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 172/314 (54%), Gaps = 6/314 (1%)
Query: 496 HVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTE 555
H+ DQYG R++Q+ L+ + FPEI LM D FGNY+ QK F + +
Sbjct: 466 HLSTICKDQYGCRYLQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASR 525
Query: 556 SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELD-GSVMKCVHDQNG 614
Q+ + + + ++ + +YG R +Q ++ + ++Q ++ ++ S+ D NG
Sbjct: 526 EQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNG 585
Query: 615 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEI 674
HV+QKCI P ++++ + S ++ L+T+ +GC ++QR L+ + + Q+ +++ I
Sbjct: 586 THVLQKCIAKFPPEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTN-GDIQERLVNSI 644
Query: 675 MQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG 734
++ L Q+ YGNY++QHVLE +I + G I ++S QKF+SN +E+C+
Sbjct: 645 IKSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTA 704
Query: 735 SPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNV 794
SP R+ ++ E L + ++ ++ D + NYV+Q+ L D+ LIL I +
Sbjct: 705 SPSTREQMLQEFLSFPN----IEQLLDDCYANYVMQRFLNVADESQKFLILRSISHVIPK 760
Query: 795 LKKYTYGKHIVSRI 808
++ +G+HI++++
Sbjct: 761 IQNTRHGRHILAKL 774
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 170/316 (53%), Gaps = 9/316 (2%)
Query: 497 VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTES 556
+ + DQ+G RF+Q+ + IF EII + LM D FGNY++QK E E
Sbjct: 282 IYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNYLVQKLLEVCNED 341
Query: 557 QRAQLASQLT---GHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV-AELDGSVMKCVHDQ 612
QR Q+ +T G ++++S M+G R +QK +E +++ ++ + L ++ + +
Sbjct: 342 QRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISALKHGIVHLIKNV 401
Query: 613 NGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMD 672
NGNHV+Q+C++ + +F+ + V L+T +GC V+Q+ L + + Q ++
Sbjct: 402 NGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLV-S 460
Query: 673 EIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLT 732
EI + L+QD +GNYV+Q+V E ++ QL G +S QK +SNVVEKCL
Sbjct: 461 EIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLK 520
Query: 733 FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHL 792
+ R +I E++ L +M DP+GNYV+Q L+ L++ I++++
Sbjct: 521 LADDKHRARIIRELINYGR----LDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNI 576
Query: 793 NVLKKYTYGKHIVSRI 808
+ L+ YGK ++S +
Sbjct: 577 SSLRTNPYGKKVLSAL 592
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
Query: 487 SFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVI 546
F + H VE +TD++G +Q+ L + E+K + EI +A L D FGNYV+
Sbjct: 420 KFLFEAAITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVL 479
Query: 547 QKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL--DGS 604
Q FE + ++ QL G+ LS+Q V++K L++ + +++ EL G
Sbjct: 480 QYVFELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGR 539
Query: 605 VMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVI 654
+ + + D GN+VIQ ++ + ++ + + +L T+PYG +V+
Sbjct: 540 LDQVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVL 589
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 45/221 (20%)
Query: 593 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 652
Q+ +AE G + DQ+G +Q+ + I+ I + + L P+G
Sbjct: 270 QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMDPFGNY 329
Query: 653 VIQRVLEHCDDANTQQ---------------------------------------IIMDE 673
++Q++LE C++ Q II+
Sbjct: 330 LVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISIIISA 389
Query: 674 IMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 733
+ + +L ++ GN+V+Q L++ P+ + V ++ + V++KCL +
Sbjct: 390 LKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKCLGY 449
Query: 734 GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLE 774
E++Q L++E+ + + +DPFGNYV+Q V E
Sbjct: 450 SEGEQKQHLVSEIASNA------LLLSQDPFGNYVLQYVFE 484
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 702 ERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMK 761
++ I + G+I +++ + +++ + + +++ NE++ E +M
Sbjct: 270 QKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISE------LMM 323
Query: 762 DPFGNYVVQKVLETC-DDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATG 815
DPFGNY+VQK+LE C +DQ ++++ S R +L K + H ++K++ T
Sbjct: 324 DPFGNYLVQKLLEVCNEDQRMQIVHSITR-KPGLLIKISCDMHGTRAVQKIVETA 377
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 172 bits (437), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 170/317 (53%), Gaps = 23/317 (7%)
Query: 503 DQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLA 562
DQ+G RF+Q++L+ ++ IF E + LMTD FGNY+IQK E T QR L
Sbjct: 574 DQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLT 633
Query: 563 SQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAE-LDGSVMKCVHDQNGNHVIQKC 621
+ H + +SL +G R +QK +E + D++ Q+V + L ++ D NGNHVIQKC
Sbjct: 634 KISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKC 693
Query: 622 IECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEH-----CDDANTQQIIMDEIMQ 676
++ + + QFI + + ++TH +GC V+QR L+H CD+ + D+++
Sbjct: 694 LQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDN------LCDKLLA 747
Query: 677 HVCNLAQDQYGNYVIQHVL----EHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLT 732
V L D +GNYV+Q+++ E K ++ L + + +S KF SNV+EK L
Sbjct: 748 LVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILK 807
Query: 733 FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELI--LSRIRV 790
E +L E+L + E +Q+++ D +GNYV+Q L+ Q+ L LS I
Sbjct: 808 TAIVSEPMIL--EILNNGGETG-IQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVA 864
Query: 791 HLNV--LKKYTYGKHIV 805
L V ++ +GK I+
Sbjct: 865 PLLVGPIRNTPHGKRII 881
Score = 99.8 bits (247), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 122/251 (48%), Gaps = 10/251 (3%)
Query: 564 QLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIE 623
Q G + L +GCR +QK L+++ + E ++ + D GN++IQK +E
Sbjct: 563 QYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLE 622
Query: 624 CIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQ 683
+ ++ + V +S +P+G R +Q+++E QI++D + + L++
Sbjct: 623 EVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSK 682
Query: 684 DQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLI 743
D GN+VIQ L+ KP + ++ + ++ + V+++CL G+ E+ L
Sbjct: 683 DLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLC 742
Query: 744 NEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQS----LELILSRIRVHLNVLKKYT 799
+++L D+ + DPFGNYVVQ ++ +++ I+ ++ L +
Sbjct: 743 DKLLALVDK------LTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHK 796
Query: 800 YGKHIVSRIEK 810
+G +++ +I K
Sbjct: 797 FGSNVIEKILK 807
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 41/244 (16%)
Query: 459 PWHLDAGINMEG-RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAA 517
P ++ +N G R L++ KT++ + + + V+ S D G+ IQ+ L+
Sbjct: 638 PHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRL 697
Query: 518 TAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMY 577
E IF I + T G V+Q+ +HGT Q L +L V +L+L +
Sbjct: 698 KPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPF 757
Query: 578 GCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSF 637
G V+Q ++I K E D I+
Sbjct: 758 GNYVVQ--------------------------------YIITKEAEKNKYDYTHKIVHLL 785
Query: 638 YGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQH-----VCNLAQDQYGNYVIQ 692
+ + LS H +G VI+++L+ A + ++ EI+ + + +L D YGNYV+Q
Sbjct: 786 KPRAIELSIHKFGSNVIEKILK---TAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQ 842
Query: 693 HVLE 696
L+
Sbjct: 843 TALD 846
Score = 33.5 bits (75), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 670 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 729
++D+ + + +L +DQ+G +Q L+ + + V + F + +++K
Sbjct: 560 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQK 619
Query: 730 CLTFGSPEERQLLINEMLGSTDENEP-LQAMMKDPFGNYVVQKVLETCD-DQSLELILSR 787
L + E+R +L T + P + +P G +QK++E D+ ++++
Sbjct: 620 LLEEVTTEQRIVL-------TKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDS 672
Query: 788 IRVHLNVLKKYTYGKHIVSR 807
+R + L K G H++ +
Sbjct: 673 LRPYTVQLSKDLNGNHVIQK 692
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 182/332 (54%), Gaps = 16/332 (4%)
Query: 483 NKTRSFELSDIVDH---VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTD 539
NK S +L+ +VD V + DQ G R +Q+ ++ + IF E+I + L TD
Sbjct: 229 NKEDSLDLASMVDSYGSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIELGTD 288
Query: 540 VFGNYVIQKFFEHGTESQRAQLASQLT---GHVLRLSLQMYGCRVIQKALEVVHVDQQTQ 596
FGNY+IQK E E QR Q+ +LT G ++++S+ YG RV+QK +E V +Q
Sbjct: 289 PFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQIS 348
Query: 597 MV-AELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQ 655
+V + L + + NGNHVI C++ + +FI+ + + ++T +GC V+Q
Sbjct: 349 LVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATTRHGCCVLQ 408
Query: 656 RVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIV 715
R + + ++++ DEI ++ LAQD +GNY++Q+++E K V+ +L G V
Sbjct: 409 RCVSYSVGEQHEKLV-DEISRNSLLLAQDPFGNYLVQYIIE--KKVGGVNVLFELRGNYV 465
Query: 716 RMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLET 775
+++ QKF S+VVEKCL + PE R ++NE++ + +++DP+ NYV+Q L
Sbjct: 466 KLATQKFGSHVVEKCLRY-YPESRSQIVNELVSVLN----FGYLLQDPYANYVIQCALSK 520
Query: 776 CDDQSLELILSRIRVHLNVLKKYTYGKHIVSR 807
++ ++R + N LK Y K I S+
Sbjct: 521 TKGFVRASLVEKVRRYEN-LKMTPYCKRIFSK 551
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 14/186 (7%)
Query: 479 EFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMT 538
+F + F L +E +T ++G +Q+ + + E+ ++ EI ++ L
Sbjct: 376 KFFSPNDNKFILEAATKFCIEIATTRHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLLAQ 435
Query: 539 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV 598
D FGNY++Q E + +L G+ ++L+ Q +G V++K L + + ++Q+V
Sbjct: 436 DPFGNYLVQYIIEKKVGG--VNVLFELRGNYVKLATQKFGSHVVEKCLR-YYPESRSQIV 492
Query: 599 AELDGSVMK---CVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVA---LSTHPYGCR 652
EL SV+ + D N+VIQ C F+ +S +V L PY R
Sbjct: 493 NEL-VSVLNFGYLLQDPYANYVIQ----CALSKTKGFVRASLVEKVRRYENLKMTPYCKR 547
Query: 653 VIQRVL 658
+ + L
Sbjct: 548 IFSKNL 553
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 712 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQK 771
G + M++ + +++K + G+ + ++ E++ + E + DPFGNY++QK
Sbjct: 244 GSVYLMAKDQLGCRLLQKFVDEGNFVDVMIIFKEVINNVIE------LGTDPFGNYLIQK 297
Query: 772 VLETCDDQSLELILSRIRVHLNVLKKYT---YGKHIVSRIEKLIATGGEGSL 820
++E C+++ IL R+ +L K + YG +V ++ + + T + SL
Sbjct: 298 LIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIETVTTKEQISL 349
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 182/330 (55%), Gaps = 8/330 (2%)
Query: 488 FELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQ 547
++ + I+D ++ S DQ S F+QQKL+ ++ + K I II LM + FGN+++Q
Sbjct: 358 YDWNVIIDKII-VSNDQQSSIFLQQKLKISSYDMKQNIVDSIISQIHPLMLNRFGNFLVQ 416
Query: 548 KFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMK 607
+ FEHGT Q Q+ S + G++L+L+ +GC V+QKA++ V D + M+ EL ++
Sbjct: 417 RCFEHGTAPQIRQMGSAMLGNMLKLATDPFGCHVVQKAIDNVTEDIKLAMMDELFLTIDV 476
Query: 608 CVHDQNGNHVIQKCIEC----IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD 663
+ HV QK E P + + + ++ G+ ++ G V+Q + E+C +
Sbjct: 477 TIMHHYACHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVE 536
Query: 664 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFA 723
+ ++ I +EI+ H+ +A+ Q+GN+V+QH++E+G+ + VI L + V S +FA
Sbjct: 537 KDKRECI-EEIIFHLDGIARGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFA 595
Query: 724 SNVVEKCLTFGSPEERQLLINEMLGSTDE--NEPLQAMMKDPFGNYVVQKVLETCDDQSL 781
S V+EK + G L + ++ + + +PL + D +GNY++Q++++
Sbjct: 596 SKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLIDIASDQYGNYLIQQIIQLGQPAEK 655
Query: 782 ELILSRIRVHLNVLKKYTYGKHIVSRIEKL 811
L+++ I+ H+ L+ YG+ + +EK
Sbjct: 656 NLVITHIKKHMVSLRGSKYGQKVAYLVEKW 685
Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 34/221 (15%)
Query: 460 WHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATA 519
WH + + G L + E K + + +I+ H+ + Q+G+ +Q +E
Sbjct: 514 WH-EVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARGQWGNWVVQHMVENGQG 572
Query: 520 EEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGC 579
E+ R+ ++ A D F + VI+K + G ++ + Q+T
Sbjct: 573 EDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITN------------ 620
Query: 580 RVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYG 639
VD+ Q + ++ DQ GN++IQ+ I+ +I+
Sbjct: 621 ---------ARVDRTRQPLIDI-------ASDQYGNYLIQQIIQLGQPAEKNLVITHIKK 664
Query: 640 QVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCN 680
+V+L YG Q+V + N+Q+ + ++ + CN
Sbjct: 665 HMVSLRGSKYG----QKVAYLVEKWNSQKQV-SSVINYNCN 700
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 164/317 (51%), Gaps = 21/317 (6%)
Query: 490 LSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKF 549
+ +I V + DQ G R +Q+ +E T E I II H L D FGNY++QK
Sbjct: 247 MVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSMDPFGNYIVQKL 306
Query: 550 FEHGTESQRAQLASQLTGH---VLRLSLQMYGCRVIQKALEVVHVDQQTQMVAE-LDGSV 605
F+ E QR + S LT + ++R+ L YG RV+QK +E V QQ +V L
Sbjct: 307 FDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGF 366
Query: 606 MKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDAN 665
+ V D NGNHVIQ C++ + + +F++ + ++ H +GC V+Q + +
Sbjct: 367 LALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQ 426
Query: 666 TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASN 725
++++ EI ++ +L+QD +GNYV+Q++++ + ++ Q ++ QKF+S+
Sbjct: 427 RERLVA-EISRNSLHLSQDPFGNYVVQYLID--QQVSAVKLLVQFRMHYAELATQKFSSH 483
Query: 726 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELIL 785
V+EKCL PE R ++ E+L + + +++DP+ NYV+Q L
Sbjct: 484 VIEKCLR-KYPESRAEIVRELLCVPN----FEYLLQDPYANYVIQTALSVTK-------- 530
Query: 786 SRIRVHLNVLKKYTYGK 802
+R L V K Y YGK
Sbjct: 531 GPVRAKL-VAKVYRYGK 546
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 55/165 (33%)
Query: 664 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFA 723
+N + M EI V +A+DQ G V+Q ++E G HE ++ + +V +S
Sbjct: 240 SNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHVVELSM---- 295
Query: 724 SNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLEL 783
DPFGNY+VQK+ + D++ L
Sbjct: 296 --------------------------------------DPFGNYIVQKLFDVSDEEQRTL 317
Query: 784 ILS--------RIRVHLNVLKKYTYGKHIVSRIEKLIATGGEGSL 820
I+S IR+ LN TYG +V ++ + + T + +L
Sbjct: 318 IVSVLTSNPRELIRICLN-----TYGTRVVQKMIETVKTKQQIAL 357
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 174/351 (49%), Gaps = 25/351 (7%)
Query: 468 MEGRLSSSLLDEFKTNKTRSFELSDIVD---HVVEFSTDQYGSRFIQQKLEAATAEEKTR 524
MEG +S DE K N +L +V+ V + DQ G R +Q+ +E T +
Sbjct: 187 MEGS-GASYPDEPKINGGLPLDLVSMVEIYGSVNLMARDQIGCRALQKLVEEGTVLDSKV 245
Query: 525 IFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTG---HVLRLSLQMYGCRV 581
IF EII H L D GNY++QK E QR + S LT ++++ L G RV
Sbjct: 246 IFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRV 305
Query: 582 IQKALEVVHVDQQTQMV-AELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQ 640
IQK ++ V QQ +V + L+ + V+D NG HV+Q C+E + + +F++ +
Sbjct: 306 IQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEY 365
Query: 641 VVALSTHPYGCRVIQRVLEHCDDANT----QQIIMDEIMQHVCNLAQDQYGNYVIQHVLE 696
L+TH YGC V+Q C NT + ++ EI + L+QD +GNYV+Q +++
Sbjct: 366 CAQLATHQYGCYVLQ-----CSLINTVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLID 420
Query: 697 HGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPL 756
++ + ++ QKF+S+V+EKCL PE R ++ E+L +
Sbjct: 421 QQV--SSVNLLLPFRTHCIELATQKFSSHVIEKCLR-KYPESRAEIVRELLSYPN----F 473
Query: 757 QAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSR 807
+ +++DP+ NYV+Q L ++ +++ L+ Y K I S+
Sbjct: 474 EQLLQDPYANYVIQTALSVTKGAVRARLVEKVK-RFGKLQSNPYCKKIFSK 523
Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 698 GKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQ 757
G P + +++ ++ G + M++ + ++K + G+ + +++ E++ E
Sbjct: 203 GLPLDLVSMV-EIYGSVNLMARDQIGCRALQKLVEEGTVLDSKVIFLEIIDHVVE----- 256
Query: 758 AMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIAT 814
+ DP GNY+VQK+L D++ +I+S + L K + I+K+I T
Sbjct: 257 -LSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKT 312
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 172/326 (52%), Gaps = 12/326 (3%)
Query: 493 IVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEH 552
+++ ++ F DQ S +QQ+L+ E+ + I+P + TLM + FGN++IQK FE+
Sbjct: 257 MIEQII-FQNDQAASLSLQQQLKNEDIEDNINLINTILPFSVTLMKNKFGNFLIQKCFEY 315
Query: 553 GTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQ 612
TE+Q + L HV LS+ +G V+QK+LE+ ++ EL + + +
Sbjct: 316 STEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLPATLMQR 375
Query: 613 NGNHVIQKCIECIPQDRIQFIISSF----YGQVVALSTHPYGCRVIQRVLEHCDDANTQQ 668
+ HV QK E + + I F G+ + +S G V+Q + E+C + + ++
Sbjct: 376 HSCHVWQKFFETRRKSLVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKD-KR 434
Query: 669 IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVE 728
+DEI+ ++ + Q+GN+VIQH++EHG ++ ++ L ++ S ++AS VVE
Sbjct: 435 TCLDEIINNMDQIICGQWGNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVE 494
Query: 729 KCLTFGSPEERQLLINEMLGSTDENE-P---LQAMMKDPFGNYVVQKVLETCDDQSLELI 784
+ L + E+ +T +NE P LQ + + +GNY+VQ +L+ + L+
Sbjct: 495 RALRVCHVTFFDRYVKEI--TTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQINLM 552
Query: 785 LSRIRVHLNVLKKYTYGKHIVSRIEK 810
++ H+ L+ + YG+ I + +EK
Sbjct: 553 AEHLKKHMVSLRGHKYGQRIAALVEK 578
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 166/317 (52%), Gaps = 45/317 (14%)
Query: 498 VEFSTDQYGSRFIQQKLEAATAEEKTR--IFPEIIPHARTLMTDVFGNYVIQKFFEHGTE 555
++ +TDQ+G RF+Q+KLE + R ++ +I P L+ D FGNY++QK ++ T
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 556 SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG---------SVM 606
Q+ L + +V ++S+ YG R +QK ++ VD + Q+ + G V+
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDT--VDNEVQIDLIIKGFSQEFTSIEQVV 333
Query: 607 KCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQ--VVALSTHPYGCRVIQRVLEHCDDA 664
++D NGNHVIQKCI + FII + Q ++ +STH +GC V+Q++L C
Sbjct: 334 TLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTHKHGCCVLQKLLSVCT-- 391
Query: 665 NTQQI--IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKP--HERTTVITQLAGQIVRMSQQ 720
QQI I +I+Q + L DQ+GNY+IQ +L+ + + + +L+ ++ ++S
Sbjct: 392 -LQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAELFNRLSNELCQLSCL 450
Query: 721 KFASNVVEKCL-------------TFGSPEERQLL---------INEMLGSTD-ENEPLQ 757
KF+SNVVEK + G +R + +N +L + D L
Sbjct: 451 KFSSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASDDVINASMNILLTTIDIFTVNLN 510
Query: 758 AMMKDPFGNYVVQKVLE 774
+++D FGNY +Q +L+
Sbjct: 511 VLIRDNFGNYALQTLLD 527
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 121/277 (43%), Gaps = 39/277 (14%)
Query: 459 PWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAAT 518
P+ LD ++ G L ++ T + ++ + I +V + S +QYG+R +Q+ ++
Sbjct: 251 PFFLDLILDPFGNYLVQKLCDYLTAEQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVD 310
Query: 519 AEEKTRIFPE-------IIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLT--GHV 569
E + + + I TL+ D+ GN+VIQK + S+ + + ++
Sbjct: 311 NEVQIDLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNI 370
Query: 570 LRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQD- 628
+ +S +GC V+QK L V + Q ++ ++ + ++DQ GN++IQ ++ D
Sbjct: 371 ITISTHKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDF 430
Query: 629 -RIQFIISSFYGQVVALSTHPYGCRVIQRVLEHC-----------------------DDA 664
+ + + ++ LS + V+++ ++ DD
Sbjct: 431 YLLAELFNRLSNELCQLSCLKFSSNVVEKFIKKLFRIITGFIVNNNGGASQRTAVASDDV 490
Query: 665 --NTQQIIMDEIMQHVCN---LAQDQYGNYVIQHVLE 696
+ I++ I N L +D +GNY +Q +L+
Sbjct: 491 INASMNILLTTIDIFTVNLNVLIRDNFGNYALQTLLD 527
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 642 VALSTHPYGCRVIQRVLEHCDDAN-TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKP 700
+ L+T +GCR +Q+ LE ++N + ++ ++I +L D +GNY++Q + ++
Sbjct: 216 IKLATDQFGCRFLQKKLETPSESNMVRDLMYEQIKPFFLDLILDPFGNYLVQKLCDYLTA 275
Query: 701 HERTTVITQLAGQIVRMSQQKFASNVVEKCL-TFGSPEERQLLINEMLGSTDENEPLQAM 759
++T +I + + ++S ++ + ++K + T + + L+I E + +
Sbjct: 276 EQKTLLIQTIYPNVFQISINQYGTRSLQKIIDTVDNEVQIDLIIKGFSQEFTSIEQVVTL 335
Query: 760 MKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIA 813
+ D GN+V+QK + I+ I N++ T+ KH ++KL++
Sbjct: 336 INDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITISTH-KHGCCVLQKLLS 388
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/432 (25%), Positives = 200/432 (46%), Gaps = 78/432 (18%)
Query: 442 RNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVD--HVVE 499
RNSR S RS+ P W LD+ M RLS LS+++D +++
Sbjct: 156 RNSR--SFTRSNNVLPT-WSLDSNGEMRSRLS----------------LSEVLDSGDLMK 196
Query: 500 FSTDQYGSRFIQQKLEAA-TAEEKTRIFPEIIPHARTLM---TDVFGNYVIQKFF----- 550
F+ D+ G +F+++ ++ + T+ +K ++F ++I + T++FGNY++Q
Sbjct: 197 FAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLA 256
Query: 551 --EHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL--DGSVM 606
+ G ++ +L + ++ + + L + CRVIQ +L+ + + ++V L D ++
Sbjct: 257 TNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLI 316
Query: 607 KCVHDQNGNHVIQKCIECIPQDRIQFIIS--SFYGQVVALSTHPYGCRVIQRVLEH--CD 662
DQN NHVIQK + IP +FI+ + + + + YGCRV+Q ++E D
Sbjct: 317 AICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTAD 376
Query: 663 DANTQ-------------QIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVIT 708
N Q +M + LA ++Y NY+IQH++ + R +I
Sbjct: 377 SMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIE 436
Query: 709 Q-LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLG-----STDENEPLQAMMKD 762
+ L ++ +SQ+KFAS+VVEK E +++E+ + L MM
Sbjct: 437 KCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFH 496
Query: 763 PFGNYVVQKVLETCDD--------------------QSLELILSRIRVHLNVLKKYTYGK 802
FGNYVVQ +L C D L+ + SR+ + L +++ GK
Sbjct: 497 QFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGK 556
Query: 803 HIVSRIEKLIAT 814
++ + L +T
Sbjct: 557 KMIETLANLRST 568
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 203/441 (46%), Gaps = 96/441 (21%)
Query: 442 RNSRFTSMMRSSMGGPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVD--HVVE 499
RNSR S RS+ P W LD+ M RLS LS+++D +++
Sbjct: 154 RNSR--SFTRSNNVLPT-WSLDSNGEMRSRLS----------------LSEVLDSGDLMK 194
Query: 500 FSTDQYGSRFIQQKLEAA-TAEEKTRIFPEIIPHARTLM---TDVFGNYVIQKF------ 549
F+ D+ G +F+++ ++ + T+ +K ++F ++I + T++FGNY +Q+
Sbjct: 195 FAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYFVQEIIGMSLT 254
Query: 550 -FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL--DGSVM 606
++ ++ +L + ++ + + L + CRVIQ +L+ + + ++V L D ++
Sbjct: 255 TYDDDNIKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLI 314
Query: 607 KCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTH-------PYGCRVIQRVLE 659
DQN NHVIQK + IP +FI+ VA H YGCRV+Q ++E
Sbjct: 315 AICVDQNANHVIQKVVAVIPLKNWEFIVD-----FVATPEHLRQICFDKYGCRVVQTIIE 369
Query: 660 H--CDDANTQ-------------QIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHER 703
D N Q +M + LA ++Y NY+IQH++ + R
Sbjct: 370 KLTADSINVDLTSAAQHLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYR 429
Query: 704 TTVITQ-LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDE---------N 753
+I + L ++ +SQ+KFAS+VVEK +P E L+ EM+ +
Sbjct: 430 ECIIEKCLMRNLLSLSQEKFASHVVEKAF-LHAPME---LLAEMMDEIFDGYMPHPGTGK 485
Query: 754 EPLQAMMKDPFGNYVVQKVLETCDD----------------QSLELIL----SRIRVHLN 793
+ L MM FGNYVVQ +L C D S ++ L SR+ +
Sbjct: 486 DALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGSYDHANSFQVWLKKLHSRVTKERH 545
Query: 794 VLKKYTYGKHIVSRIEKLIAT 814
L +++ GK ++ + L +T
Sbjct: 546 RLSRFSSGKKMIETLAHLRST 566
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 142/316 (44%), Gaps = 15/316 (4%)
Query: 501 STDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQ 560
+TD+ S+ +++ + T E IF +I LM D FGN V++ + Q
Sbjct: 217 ATDRVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIIL 276
Query: 561 LASQLTGHV---LRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG---SVMKCVHDQNG 614
+ +T H+ + + G IQ L +H Q+ +D ++ + N
Sbjct: 277 IVDVVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNA 336
Query: 615 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVL--EHCDDANTQQIIMD 672
+VI C + + ++ ++ GC ++Q+ E + +Q ++
Sbjct: 337 KYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLIS 396
Query: 673 EIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLT 732
E+++H L + +GNYV+Q+V+E HE ++ +L +++ K+ S+VV+K L
Sbjct: 397 EVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQKLLK 456
Query: 733 FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHL 792
+ + ++++ + G + ++ DPFGNYV+Q + +++ I ++
Sbjct: 457 LRGIDSKLIVVDLLRG-------IDTLLLDPFGNYVIQTAWFVSKEDVRQMLRYYIERNI 509
Query: 793 NVLKKYTYGKHIVSRI 808
+++ +G I+ ++
Sbjct: 510 RLMRCNKFGNKILEKL 525
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 18/244 (7%)
Query: 580 RVIQKALE-VVHVDQQTQMVAELDGSVM---KCVHDQNGNHVIQKCIECIPQDRIQFII- 634
RV K LE + V + + DG ++ + + D GN V++ I ++I I+
Sbjct: 220 RVWSKELEKTIFVGTKETIDMIFDGLIVGICELMVDPFGNDVVKLLIGKCSSEQIILIVD 279
Query: 635 --SSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQI--IMDEIMQHVCNLAQDQYGNYV 690
+ + V + +P G IQ +L + QI IMD I L ++ YV
Sbjct: 280 VVTRHISKFVNICFNPIGTLAIQVLLTSIHERANNQIPRIMDAISSVALQLTRNTNAKYV 339
Query: 691 IQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCL---TFGSPEERQLLINEML 747
I + ++ ++ +++ + ++++C + E RQ LI+E++
Sbjct: 340 ILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQRLISEVI 399
Query: 748 GSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSR 807
E + + GNYVVQ V+E + +L+++++ + L + YG H+V +
Sbjct: 400 ------EHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQK 453
Query: 808 IEKL 811
+ KL
Sbjct: 454 LLKL 457
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/317 (19%), Positives = 134/317 (42%), Gaps = 16/317 (5%)
Query: 500 FSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRA 559
F+ D+ S + + T E I+ +I LM D +G+ V+Q + Q
Sbjct: 208 FAKDKEMSERLGMSIFQGTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIV 267
Query: 560 QLASQLTGHVLR---LSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNH 616
QL +T + + + + G IQ L ++ + Q+ +D + NH
Sbjct: 268 QLVDIVTQQMFQFVNICIDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNH 327
Query: 617 ---VIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVL--EHCDDANTQQIIM 671
VI C P + ++ ++ +GC ++Q + + +Q ++
Sbjct: 328 AIFVILACFRLFPL-HCRLLLELIVQNCHQIAIDQHGCCLLQLCFNKDRVPNLEIRQRLI 386
Query: 672 DEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCL 731
E + + L + YGNYV+Q+++E + ++ QL G +++ K+ S+ V+K L
Sbjct: 387 MEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQKLL 446
Query: 732 TFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVH 791
+ R ++I+ + + ++ DPFGNYV+Q D ++ I +
Sbjct: 447 KLRWIDSRVIVIDLL-------REIDTLLLDPFGNYVIQTAWFVSKDDVRRMLRYHIERN 499
Query: 792 LNVLKKYTYGKHIVSRI 808
+ +++ +G ++ ++
Sbjct: 500 IPMMRCNKFGNKVLEKL 516
Score = 37.7 bits (86), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 55/269 (20%)
Query: 553 GTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVH-- 610
GT+ + + L G + L + YG V+Q + +Q Q+V + + + V+
Sbjct: 225 GTKETVDAIYNGLIGDICELMVDPYGSDVVQLLMRRCSSEQIVQLVDIVTQQMFQFVNIC 284
Query: 611 -DQNGNHVIQKCIECI---PQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLE----HCD 662
D G + IQ + CI +D+I I+ + LS + VI HC
Sbjct: 285 IDSLGTNAIQVLLTCINERAKDQIPRIVDVVRTVALQLSKSNHAIFVILACFRLFPLHC- 343
Query: 663 DANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKF 722
+++++ I+Q+ +A DQ+G ++Q +
Sbjct: 344 -----RLLLELIVQNCHQIAIDQHGCCLLQLCFNKDR----------------------- 375
Query: 723 ASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLE 782
+ E RQ LI E + + + + +GNYVVQ ++E + ++
Sbjct: 376 ----------VPNLEIRQRLIMEAIANA------LRLCLNCYGNYVVQYIVELNNRYLID 419
Query: 783 LILSRIRVHLNVLKKYTYGKHIVSRIEKL 811
++ ++ + L + YG H V ++ KL
Sbjct: 420 ALVRQLIGNYAHLARNKYGSHAVQKLLKL 448
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 133/303 (43%), Gaps = 20/303 (6%)
Query: 489 ELSDIVDHVVEFSTDQYGSRFIQQKLEAA---------TAEEKTRIFPEIIPHARTLMTD 539
EL+D + S R KL T EE I + L +D
Sbjct: 725 ELTDFAAQIPSISKAFSSRRLNAPKLRQVRKRIDNGLCTQEEVEDIAINWLDEVSDLSSD 784
Query: 540 VFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 599
GN V+QK F++ ++ + + ++ H+ ++ + G QK ++V + Q +++A
Sbjct: 785 HLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQMRLIA 844
Query: 600 E-LDGSVMKCVHDQNGNHVIQKCIEC-IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRV 657
+ L + DQ GN+V+Q C++ P + F+ + Q ++ YG R ++
Sbjct: 845 KHLQPYIPLLFADQFGNYVVQTCLKFGAPMN--DFVFEAILNQFWVIAQSRYGSRAVRAC 902
Query: 658 LEHCDDANTQQIIM-DEIMQHVCNLAQDQYGNYVIQHVLEH-GKPHERTTVITQLAGQIV 715
LE D Q++++ I + +LA + G ++ +++E+ PH + + IV
Sbjct: 903 LESPDVTEEQRVLVAAAITVYSVHLAMNGNGTLLLTYLVENMNYPHIPILLTRRFVQDIV 962
Query: 716 RMSQQKFASNVVEKCLTF--GSPEERQLLINEMLGSTDENEP---LQAMMKDPFGNYVVQ 770
R+ + A N + K ++ G L+++ +L + ++ P + + + +G +
Sbjct: 963 RVCTHRLAYNSLLKIISISQGDTACGDLVVDAILDTQNDLNPNSLEKILFEQTYGPSFIC 1022
Query: 771 KVL 773
K+L
Sbjct: 1023 KLL 1025
Score = 36.6 bits (83), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 759 MMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGGEG 818
+ D GN VVQK+ + C D E++L RI HL + + G +I + +T +
Sbjct: 781 LSSDHLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVASTEAQM 840
Query: 819 SL 820
L
Sbjct: 841 RL 842
>sp|P47135|JSN1_YEAST Protein JSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=JSN1 PE=1 SV=1
Length = 1091
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 120/268 (44%), Gaps = 18/268 (6%)
Query: 536 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT 595
L +D GN ++QK FEH ++ + + + + ++ + + G QK + + H +Q
Sbjct: 625 LSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQI 684
Query: 596 QMVAE-LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVI 654
V + + ++DQ GN+VIQ C+ QFI S + + YG R +
Sbjct: 685 MQVTQGVKDYCTPLINDQFGNYVIQ-CVLKFGFPWNQFIFESIIANFWVIVQNRYGARAV 743
Query: 655 QRVLEHCDDANTQQ--IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVITQLA 711
+ LE D +Q ++ I+ + L+ + G ++ L+ P+ + + +L
Sbjct: 744 RACLEAHDIVTPEQSIVLSAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLT 803
Query: 712 GQIVRMSQQKFASNVVEKCLTF-GSPEERQLLINEMLG------STDENEPLQAMMKDPF 764
+IV + + AS + K L + G R+++++ + G S+ E + + + +
Sbjct: 804 KRIVELCGHRLASLTILKVLNYRGDDNARKIILDSLFGNVNAHDSSPPKELTKLLCETNY 863
Query: 765 GNYVVQKVLETCDDQSLELILSRIRVHL 792
G V KVL ++ L+ +R H+
Sbjct: 864 GPTFVHKVL------AMPLLEDDLRAHI 885
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Query: 491 SDIVDHVVEFSTDQY---------GSRFIQQKLEAA-TAEEKTRIFPEIIPHARTLMTDV 540
SDI+ ++ T +Y G+ Q+ + A T + ++ + + L+ D
Sbjct: 643 SDIIKDIMLRKTSKYLTSMGVHKNGTWACQKMITMAHTPRQIMQVTQGVKDYCTPLINDQ 702
Query: 541 FGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALE---VVHVDQQTQM 597
FGNYVIQ + G + S + + + YG R ++ LE +V +Q +
Sbjct: 703 FGNYVIQCVLKFGFPWNQFIFES-IIANFWVIVQNRYGARAVRACLEAHDIVTPEQSIVL 761
Query: 598 VAELDGSVMKCVHDQNGNHVIQKCIEC-IPQDRIQFIISSFYGQVVALSTHPYGCRVIQR 656
A + + NG ++ ++ + +R + ++V L H I +
Sbjct: 762 SAMIVTYAEYLSTNSNGALLVTWFLDTSVLPNRHSILAPRLTKRIVELCGHRLASLTILK 821
Query: 657 VLEHCDDANTQQIIMDEIMQHV 678
VL + D N ++II+D + +V
Sbjct: 822 VLNYRGDDNARKIILDSLFGNV 843
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 670 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 729
++DE+ + L+ D GN ++Q + EH + ++ + + + M K + +K
Sbjct: 618 MLDELPE----LSSDYLGNTIVQKLFEHSSDIIKDIMLRKTSKYLTSMGVHKNGTWACQK 673
Query: 730 CLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIR 789
+T + + + + G D PL + D FGNYV+Q VL+ + + I I
Sbjct: 674 MITMAHTPRQIMQVTQ--GVKDYCTPL---INDQFGNYVIQCVLKFGFPWN-QFIFESII 727
Query: 790 VHLNVLKKYTYGKHIV 805
+ V+ + YG V
Sbjct: 728 ANFWVIVQNRYGARAV 743
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 24/285 (8%)
Query: 501 STDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQ 560
+ D S +Q + E +IF +I H LM D +G+ V +K E T+ Q +
Sbjct: 159 AKDGIESHMLQYVIAKGLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITR 218
Query: 561 LASQLTGH---VLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSV-MKCVHDQNGNH 616
+ + +RL + +G IQ + + ++Q E V + D +
Sbjct: 219 VLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHR 278
Query: 617 VIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQ 676
VI C ++++ ++ GC ++++++ + ++ EI+
Sbjct: 279 VILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQ-SSRELRDPLIKEIIS 337
Query: 677 HVCNLAQDQYG----------NYVIQHVLEHGKPHERTTVITQ-LAGQIVRMSQQKFASN 725
L + YG NYV+Q++L K +E T+ +++ L G V++S K+ S+
Sbjct: 338 IAVRLCGNCYGTLTPKSLLVRNYVVQYLLRL-KDYEVTSALSKHLDGNYVQLSYDKYGSH 396
Query: 726 VVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQ 770
VV+KCL R+ +I E+L D +++ DP+G+YV+Q
Sbjct: 397 VVQKCLESREFSSRR-IIAELLSDID------SLLVDPYGDYVIQ 434
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 109/273 (39%), Gaps = 51/273 (18%)
Query: 544 YVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMV----A 599
YVI K G + ++ L HV L L YG +V +K +E +Q T+++
Sbjct: 170 YVIAK----GLKETIDKIFDNLISHVCELMLDYYGHKVFRKLMEKCTDEQITRVLDIVLE 225
Query: 600 ELDGSVMKCVHDQNGNHVIQKCIECI-PQDRIQFIISSFYGQVVALSTHPYGCRVIQRVL 658
E V CVH +G H IQ + + +++I + + + L+ RVI
Sbjct: 226 EPFEFVRLCVH-THGTHAIQGLMRSLCSEEQISRFMETLCYVSLLLTKDVIAHRVILFCF 284
Query: 659 EHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMS 718
++T+ + ++ I+Q+ +A DQ G +++ ++ R +I ++ VR+
Sbjct: 285 NQFSPSHTRYL-LEVIVQNCYQVAIDQNGCCMLKKLIRQSSRELRDPLIKEIISIAVRLC 343
Query: 719 QQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDD 778
+G+ + LL+ NYVVQ +L D
Sbjct: 344 GN-----------CYGTLTPKSLLVR---------------------NYVVQYLLRLKDY 371
Query: 779 QSLELILSRIRVHLN----VLKKYTYGKHIVSR 807
+ + S + HL+ L YG H+V +
Sbjct: 372 E----VTSALSKHLDGNYVQLSYDKYGSHVVQK 400
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 110/253 (43%), Gaps = 30/253 (11%)
Query: 555 ESQRAQLASQLTGH---VLRLSLQMYGCRVIQ----KALEVVHVDQQTQMVAELDGSVMK 607
ES ++ S LT L L+ YG + ++ ++ + H+ + +D +
Sbjct: 246 ESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLDHL-----LFCAVDTNFFL 300
Query: 608 CVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQ 667
+ D+ G +I I + + + + + Y + L+ GC + VL+ +
Sbjct: 301 LMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEI-----R 355
Query: 668 QIIMDEIMQHVCN----LAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFA 723
I D I + V N L+ D YG +V+Q++L P T + +L G R++ ++
Sbjct: 356 GIYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQG 415
Query: 724 SNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLEL 783
S VVEKCL S R ++ E G+ E M D FGN+VVQ L ++ +
Sbjct: 416 SYVVEKCLK--SDFARDQVLEEFRGNAKE---WVRMTTDKFGNFVVQSALRVMKEKEMRP 470
Query: 784 IL----SRIRVHL 792
+L ++R H
Sbjct: 471 LLREFVEKLRPHF 483
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 140/314 (44%), Gaps = 31/314 (9%)
Query: 471 RLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAA--TAEEKTRIFPE 528
++++ +L +T ++R FE S + R I++ +++ T EE I
Sbjct: 146 KVATEILPPVETLRSRQFEASKL--------------REIRKNIDSGFYTQEEIEVIARS 191
Query: 529 IIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEV 588
++ L +D GN V+QKFFE+ ++ + + ++ ++ + + G QK ++V
Sbjct: 192 MLDDVAELSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYLAAIGIHKNGTWAAQKIIDV 251
Query: 589 VHVDQQTQMVAE-LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVA---- 643
++Q ++ + L DQ GN+V Q C+ R ++ ++F +V+A
Sbjct: 252 ASTEKQMDLIVKHLRPYTALLYFDQFGNYVAQCCL------RFKYPKNTFLFEVMARHCC 305
Query: 644 -LSTHPYGCRVIQRVLEHCDDANTQQ-IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPH 701
+ +G R I+ LE+ + QQ +++ I+ + LA + G ++ +L++
Sbjct: 306 EIGQSRFGARAIRACLENENATFEQQALVVASIIINSHLLATNSNGMLLLTWLLDNSFFR 365
Query: 702 ERTTVIT-QLAGQIVRMSQQKFASNVVEKCLTFG-SPEERQLLINEMLGSTDENEPLQAM 759
R ++ LA + K AS ++ K + PE R LL+ + S +N +
Sbjct: 366 NRHRLLAIHLATHLHTTCTHKLASTLIFKLINNKQEPESRNLLLKNLFFSEKDNVLTYIL 425
Query: 760 MKDPFGNYVVQKVL 773
G + KV+
Sbjct: 426 QDQAVGPSFIHKVI 439
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 733 FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHL 792
F + EE +++ ML E + D GN VVQK E C D E +L RI +L
Sbjct: 179 FYTQEEIEVIARSMLDDVAE------LSSDYLGNTVVQKFFEYCSDPIKEAMLERIAPYL 232
Query: 793 NVLKKYTYGKHIVSRIEKLIATGGEGSLDL 822
+ + G +I + +T E +DL
Sbjct: 233 AAIGIHKNGTWAAQKIIDVAST--EKQMDL 260
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 4/225 (1%)
Query: 550 FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCV 609
+ GT A L + + + ++ G + +QK + + D + + +
Sbjct: 68 LDTGTLMWMASLMTSDCDYFMVITTNKNGSKTLQKLMGMSD-DMDVFFFEAIMRLFIHVM 126
Query: 610 HDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQI 669
D+ ++V + + QD+ + + L+ YGC + ++ DD +
Sbjct: 127 TDKYASYVTIQGMRVFQQDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQ 186
Query: 670 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 729
++D + + L+ D YGN+V+QHVL+ + +L G V +S +K+ S +VE+
Sbjct: 187 LLDIVANNALLLSNDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVER 246
Query: 730 CLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLE 774
L G ++++ + T E L + + +GN+VV K LE
Sbjct: 247 LLEAGDVPMATVVLDLLACKT---EMLIRLARSEYGNFVVCKALE 288
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
Query: 495 DHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGT 554
D+ + +T++ GS+ +Q KL + + F I+ +MTD + +YV +
Sbjct: 85 DYFMVITTNKNGSKTLQ-KLMGMSDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQ 143
Query: 555 ESQRAQLASQLTGHVLRLSLQMYGC----RVIQKALEVVHVDQQTQMVAELDGSVMKCVH 610
+ +R + Q+ + L+ YGC +I + + DQ +VA + + +
Sbjct: 144 QDKRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVA---NNALLLSN 200
Query: 611 DQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 670
D GN V+Q ++ + I G V LS YG +++R+LE D ++
Sbjct: 201 DAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLE-AGDVPMATVV 259
Query: 671 MDEI---MQHVCNLAQDQYGNYVIQHVLE 696
+D + + + LA+ +YGN+V+ LE
Sbjct: 260 LDLLACKTEMLIRLARSEYGNFVVCKALE 288
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 14/176 (7%)
Query: 480 FKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKL-EAATAEEKTRIFPEIIPHARTLMT 538
F+ +K R I+ + + DQYG + + + + + ++ + +A L
Sbjct: 142 FQQDK-RELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSN 200
Query: 539 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT--- 595
D +GN+V+Q + +A +L G+ + LS + YG ++++ LE V T
Sbjct: 201 DAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVL 260
Query: 596 QMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISS--FYGQVVALSTHPY 649
++A +++ + GN V+ K +E + I+++ FYG V L PY
Sbjct: 261 DLLACKTEMLIRLARSEYGNFVVCKALELTNE-----ILTADLFYGLVNRL--MPY 309
Score = 40.0 bits (92), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 642 VALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPH 701
+ ++T+ G + +Q+++ DD + + IM+ ++ D+Y +YV + +
Sbjct: 88 MVITTNKNGSKTLQKLMGMSDDMDV--FFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQD 145
Query: 702 ERTTVITQLAGQIVRMSQQKFASNVVEKCLT-FGSPEERQLLINEMLGSTDENEPLQAMM 760
+R + Q+ ++ ++ + + +T P R +++L N L +
Sbjct: 146 KRELMYDQILRYACFLAGDQYGCIALNEIITDLDDPYYR----DQLLDIVANNALLLS-- 199
Query: 761 KDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRI 808
D +GN+VVQ VL+ D + I ++ + L YG +IV R+
Sbjct: 200 NDAYGNFVVQHVLKLRDSRCTRNIADKLCGYCVELSFKKYGSYIVERL 247
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 611 DQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 670
D+ ++V + + QD+ + + + L+ YGC + +++ DD + +
Sbjct: 128 DKYASYVAIQGMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEIIKELDDPYYRDEL 187
Query: 671 MDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKC 730
MD + + L+ D YGN+V+QHVL+ + +L G V +S +K+ S +VE+
Sbjct: 188 MDIVSNNALLLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERL 247
Query: 731 LTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDD-QSLELILSRIR 789
L ++++ + T E L + + GN+VV K+LE +D + +L S +
Sbjct: 248 LEVRDIPMATIVLDLLACKT---EMLIRLARSENGNFVVCKLLELTNDILTADLFYSLV- 303
Query: 790 VHLNVLKKYTYGKH 803
N L+ Y + H
Sbjct: 304 ---NKLRPYRFLLH 314
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 480 FKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKL-EAATAEEKTRIFPEIIPHARTLMT 538
FK +K R I+ + + + DQYG + + + E + + + +A L
Sbjct: 142 FKQDK-RELMYDHILRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSN 200
Query: 539 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT--- 595
D +GN+V+Q + +A +L G+ + LS + YG ++++ LEV + T
Sbjct: 201 DAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERLLEVRDIPMATIVL 260
Query: 596 QMVAELDGSVMKCVHDQNGNHVIQKCIE 623
++A +++ +NGN V+ K +E
Sbjct: 261 DLLACKTEMLIRLARSENGNFVVCKLLE 288
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 13/229 (5%)
Query: 475 SLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHAR 534
S+LD SF SD D+ + + ++ GS+ +Q KL + + F I+
Sbjct: 66 SVLDTGMLMWMASFLTSD-SDYFMVITRNKNGSKSLQ-KLMRMSDDMDVFFFVAIMRLFI 123
Query: 535 TLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGC----RVIQKALEVVH 590
+M D + +YV + + +R + + + L L+ YGC +I++ + +
Sbjct: 124 HVMIDKYASYVAIQGMRIFKQDKRELMYDHILRYALFLARDQYGCIALNEIIKELDDPYY 183
Query: 591 VDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYG 650
D+ +V+ + + +D GN V+Q ++ I G V LS YG
Sbjct: 184 RDELMDIVS---NNALLLSNDAYGNFVVQHVLKLHDSRCTGNIADKLCGYCVELSFKKYG 240
Query: 651 CRVIQRVLEHCDDANTQQIIMDEI---MQHVCNLAQDQYGNYVIQHVLE 696
+++R+LE D I++D + + + LA+ + GN+V+ +LE
Sbjct: 241 SYIVERLLE-VRDIPMATIVLDLLACKTEMLIRLARSENGNFVVCKLLE 288
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 650 GCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQ 709
G + +Q+++ DD + + IM+ ++ D+Y +YV + K +R +
Sbjct: 96 GSKSLQKLMRMSDDMDVFFFV--AIMRLFIHVMIDKYASYVAIQGMRIFKQDKRELMYDH 153
Query: 710 LAGQIVRMSQQKFASNVVEKCLT-FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYV 768
+ + +++ ++ + + + P R +E++ N L + D +GN+V
Sbjct: 154 ILRYALFLARDQYGCIALNEIIKELDDPYYR----DELMDIVSNNALLLS--NDAYGNFV 207
Query: 769 VQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRI 808
VQ VL+ D + I ++ + L YG +IV R+
Sbjct: 208 VQHVLKLHDSRCTGNIADKLCGYCVELSFKKYGSYIVERL 247
>sp|Q8BKS9|K0020_MOUSE Pumilio domain-containing protein KIAA0020 OS=Mus musculus
GN=Kiaa0020 PE=2 SV=2
Length = 647
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 24/216 (11%)
Query: 545 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGS 604
VIQ F ++G E QR Q +L G ++ LS Y +++K L Q +++ G
Sbjct: 181 VIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGH 240
Query: 605 VMKCVHDQNGNHVIQKCI--ECIPQDRIQFIISSFYGQVVAL---STHPYGCRVIQRVLE 659
V K + + +++ + I + R + YG L + HP + +VLE
Sbjct: 241 VRKMLRHSEASAIVEYAYNDKAILEQR-NMLTEELYGNTFQLYKSADHP----TLDKVLE 295
Query: 660 HCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEH---------GKPHERTTVITQL 710
++IMDE+ Q + +AQ + VI+H L H P R+ +I +
Sbjct: 296 L--QPAKLELIMDEMKQILTPMAQKE---AVIKHSLVHKVFLDFFTYAPPKPRSELIEAI 350
Query: 711 AGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEM 746
+V ++ + V CL G+P++R++++ M
Sbjct: 351 REAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTM 386
>sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 647
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 120/277 (43%), Gaps = 32/277 (11%)
Query: 545 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGS 604
VIQ ++G+E QR +L G ++ LS Y +++K L Q +++ G
Sbjct: 181 VIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGH 240
Query: 605 VMKCVHDQNGNHVIQKCI--ECIPQDRIQFIISSFYGQVVAL---STHPYGCRVIQRVLE 659
V K + + +++ + I + R + YG L + HP +++VLE
Sbjct: 241 VRKMLRHSEASAIVEYAYNDKAILEQR-NMLTEELYGNTFQLYKSADHP----TLEKVLE 295
Query: 660 HCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEH---------GKPHERTTVITQL 710
++I+DE+ Q + +AQ + VI+H L H P R+ +I +
Sbjct: 296 --VQPGKLELILDEMKQILTPMAQKE---AVIKHSLVHKVFLDFFTYAPPKLRSELIEAI 350
Query: 711 AGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQ 770
+V ++ + V CL G+P++R++++ M ++ + + + V+
Sbjct: 351 REAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTM------KTYVEKIANGQYSHLVLL 404
Query: 771 KVLETCDDQSL--ELILSRIRVHLNVLKKYTYGKHIV 805
+ DD L ++I+S + L + YG+ ++
Sbjct: 405 AAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVL 441
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/283 (18%), Positives = 125/283 (44%), Gaps = 24/283 (8%)
Query: 498 VEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQ 557
+ F+ D +R IQ ++ + E++ F E+ L + +++KF +G++ Q
Sbjct: 172 IAFAHD--STRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQ 229
Query: 558 RAQLASQLTGHVLRLSLQMYGCRVIQKAL-EVVHVDQQTQMVAELDGSVMKCVHDQNGNH 616
A++ GHV ++ +++ A + ++Q+ + EL G+ + ++ +
Sbjct: 230 IAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQ-LYKSADHP 288
Query: 617 VIQKCIECIPQDRIQFIISSF------YGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 670
++K +E P +++ I+ Q A+ H +V + ++I
Sbjct: 289 TLEKVLEVQP-GKLELILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSELI 347
Query: 671 MDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKC 730
+ I + V LA G V H L HG P +R ++ + + +++ +++ V+
Sbjct: 348 -EAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYSHLVL--L 404
Query: 731 LTFGSPEE----RQLLINEMLGSTDENEPLQAMMKDPFGNYVV 769
F ++ +Q++I+E++ S L +++ D +G V+
Sbjct: 405 AAFDCIDDTKLVKQIIISEVISS------LPSIVNDKYGRKVL 441
Score = 40.8 bits (94), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 594 QTQMVAELDGSVMKCVHDQNGNHVIQKCI-ECIPQDRIQFIISSFYGQVVALSTHPYGCR 652
+++++ + +V+ H +G V C+ P+DR + I+ + V ++ Y
Sbjct: 343 RSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDR-KVIVKTMKTYVEKIANGQYSHL 401
Query: 653 VIQRVLEHCDDAN-TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQL 710
V+ + DD +QII+ E++ + ++ D+YG V+ ++L P I QL
Sbjct: 402 VLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSPRAPAHLVPEIIQL 460
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 111/244 (45%), Gaps = 21/244 (8%)
Query: 495 DHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGT 554
D+ + T ++GSR +Q KL + + I+ + TD + +YV +
Sbjct: 82 DYFMSIVTTKFGSRRVQ-KLLGKSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFD 140
Query: 555 ESQRAQLASQLTGHVLRLSLQMYGC----RVIQKALEVVHVDQQTQMVAELDGSVMKCVH 610
+ + L ++ H L L+ +GC +I A + + DQ ++VA + ++ +
Sbjct: 141 KVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVAS---NALRLSN 197
Query: 611 DQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQII 670
D +GN V+Q + I I + YGQ + LS YG +++++LE + +
Sbjct: 198 DASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVVE 257
Query: 671 M-----DEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQI---VRMSQQKF 722
+ D +M+ LA++++GN+V+ L K R + L ++ +R+ ++
Sbjct: 258 LLGCDGDRLMR----LARNEFGNFVVVKALRFTK-MSRMDLFWGLVQKLMPFIRLLRRSH 312
Query: 723 ASNV 726
SN+
Sbjct: 313 GSNI 316
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 111/252 (44%), Gaps = 8/252 (3%)
Query: 536 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTG---HVLRLSLQMYGCRVIQKALEVVHVD 592
LMTD G ++ + +++ ++AS LT + + + +G R +QK L D
Sbjct: 48 LMTDGDGVSYFKEMISNSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD-D 106
Query: 593 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 652
A + + D+ ++V + + + + + + L+ +GC
Sbjct: 107 VDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCI 166
Query: 653 VIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG 712
+ ++ DD + +++ + + L+ D GN+V+QHVL + L G
Sbjct: 167 ALNDIITDADDPYYRDQLLELVASNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYG 226
Query: 713 QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKV 772
Q + +S +K+ S +VEK L E +++ E+LG + + L + ++ FGN+VV K
Sbjct: 227 QCIELSFKKYGSYIVEKLLE--VEESMVVVVVELLGC--DGDRLMRLARNEFGNFVVVKA 282
Query: 773 LETCDDQSLELI 784
L ++L
Sbjct: 283 LRFTKMSRMDLF 294
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 112/252 (44%), Gaps = 8/252 (3%)
Query: 536 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTG---HVLRLSLQMYGCRVIQKALEVVHVD 592
LMTD G ++ +++ ++AS LT + + + +G R +QK L D
Sbjct: 48 LMTDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSD-D 106
Query: 593 QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCR 652
A + + D+ ++V + + + + + + L+ +GC
Sbjct: 107 VDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCI 166
Query: 653 VIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG 712
+ ++ DD + +++ ++ + L+ D GN+V+QHVL + L G
Sbjct: 167 ALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNLYG 226
Query: 713 QIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKV 772
Q + +S +K+ S +VEK L E +++ E+LG + + L + ++ FGN+VV K
Sbjct: 227 QCIELSFKKYGSYIVEKLLE--VEESMVVVVVELLGC--DGDRLMRLARNEFGNFVVVKA 282
Query: 773 LETCDDQSLELI 784
L + ++L
Sbjct: 283 LRFTKEMRMDLF 294
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 46/225 (20%)
Query: 481 KTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDV 540
K++ +F + I+ + +TD+Y S + + K ++ I+ HA L D
Sbjct: 103 KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQ 162
Query: 541 FGNYVIQKFFEHGTES-QRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVA 599
G + + R QL + + LRLS
Sbjct: 163 HGCIALNDIITDADDPYYRDQLLELVVSNALRLS-------------------------- 196
Query: 600 ELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLE 659
+D +GN V+Q + I I + YGQ + LS YG +++++LE
Sbjct: 197 ----------NDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLE 246
Query: 660 HCDDANTQQIIM-----DEIMQHVCNLAQDQYGNYVIQHVLEHGK 699
+ + + D +M+ LA++++GN+V+ L K
Sbjct: 247 VEESMVVVVVELLGCDGDRLMR----LARNEFGNFVVVKALRFTK 287
>sp|Q12221|PUF2_YEAST mRNA-binding protein PUF2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF2 PE=1 SV=1
Length = 1075
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 10/219 (4%)
Query: 536 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT 595
L +D GN VIQK FE+ + R + + ++ + + G V QK +++ + +Q
Sbjct: 584 LSSDYLGNTVIQKLFENSSNIIRDIMLRKCNKYLTSMGVHKNGTWVCQKIIKMANTPRQI 643
Query: 596 QMVAE-LDGSVMKCVHDQNGNHVIQKCIEC-IPQDRIQFIISSFYGQVVALSTHPYGCRV 653
+V + +DQ GN+VIQ ++ P + FI S + + YG R
Sbjct: 644 NLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPWN--SFIFESVLSHFWTIVQNRYGSRA 701
Query: 654 IQRVLEHCDDANTQ---QIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVITQ 709
++ LE D TQ I I+ LA D G +I +L+ P++ + +
Sbjct: 702 VRACLE-ADSIITQCQLLTITSLIIVLSPYLATDTNGTLLITWLLDTCTLPNKNLILCDK 760
Query: 710 LAGQ-IVRMSQQKFASNVVEKCLTFGSPEERQLLINEML 747
L + +V++ K S V K L EE L N+++
Sbjct: 761 LVNKNLVKLCCHKLGSLTVLKILNLRGGEEEALSKNKII 799
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 19/234 (8%)
Query: 586 LEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALS 645
L +V +DQ ++ + D GN VIQK E ++ + ++
Sbjct: 573 LAIVMLDQLPELSS-----------DYLGNTVIQKLFENSSNIIRDIMLRKCNKYLTSMG 621
Query: 646 THPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTT 705
H G V Q++++ + ++ + + L DQ+GNYVIQ +L+ G P +
Sbjct: 622 VHKNGTWVCQKIIKMANTPRQINLVTSGVSDYCTPLFNDQFGNYVIQGILKFGFPWN-SF 680
Query: 706 VITQLAGQIVRMSQQKFASNVVEKCLTFGS--PEERQLLINEMLGSTDENEPLQAMMKDP 763
+ + + Q ++ S V CL S + + L I ++ + D
Sbjct: 681 IFESVLSHFWTIVQNRYGSRAVRACLEADSIITQCQLLTITSLIIVLSP-----YLATDT 735
Query: 764 FGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRIEKLIATGGE 817
G ++ +L+TC + LIL V+ N++K + ++ ++ L GGE
Sbjct: 736 NGTLLITWLLDTCTLPNKNLILCDKLVNKNLVKLCCHKLGSLTVLKILNLRGGE 789
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 117/257 (45%), Gaps = 24/257 (9%)
Query: 561 LASQLTG---HVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHV 617
+AS LT + L ++ M G + IQK L D A + + + D+ ++V
Sbjct: 83 MASLLTSDPDYFLMIARNMNGSKRIQKLLGKTD-DVDALFAAAILRRFLHIITDKYASYV 141
Query: 618 IQKCIECIPQDRIQFIISSFYGQVVALSTH----PYGCRVIQRVLEHCDDANTQQIIMDE 673
+++ + + + + + Y ++ ++H +G + ++ DA ++ D
Sbjct: 142 VRRGMTVFDKKKKK----AMYEHILHYASHIARDKHGNLALNDIIT---DAYRNKLF-DV 193
Query: 674 IMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 733
I L+ D YGN+VIQ VL+ + ++ L G V +S QK+ S VV+ L
Sbjct: 194 IAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKYGSYVVDVLLE- 252
Query: 734 GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVH-- 791
+ E +++ E++ E + L + ++ +GN++V K L + + L VH
Sbjct: 253 -TKESMVVVVEELMEC--EGDMLMRLARNEYGNFLVCKALRVTQKEMVRTDLFWGLVHKL 309
Query: 792 --LNVLKKYTYGKHIVS 806
+ L +++ GK+I S
Sbjct: 310 KPFHNLLRWSRGKNIAS 326
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 495 DHVVEFST----DQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFF 550
+H++ +++ D++G+ + + T + ++F I A L D +GN+VIQ+
Sbjct: 159 EHILHYASHIARDKHGNLALN---DIITDAYRNKLFDVIAHKALVLSNDAYGNFVIQRVL 215
Query: 551 EHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALE-----VVHVDQQTQMVAELDGS- 604
+ + + L GH + LS Q YG V+ LE VV V++ + E +G
Sbjct: 216 KLNDLRSKNNIVVSLRGHFVDLSFQKYGSYVVDVLLETKESMVVVVEE----LMECEGDM 271
Query: 605 VMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQV 641
+M+ ++ GN ++ K + ++ ++ F+G V
Sbjct: 272 LMRLARNEYGNFLVCKALRVTQKEMVR--TDLFWGLV 306
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 87/215 (40%), Gaps = 46/215 (21%)
Query: 481 KTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDV 540
KT+ + + I+ + TD+Y S +++ + ++K ++ I+ +A + D
Sbjct: 113 KTDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKKKKKAMYEHILHYASHIARDK 172
Query: 541 FGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAE 600
GN + T++ R +L + L LS YG VIQ+ L++ + + +V
Sbjct: 173 HGNLALNDII---TDAYRNKLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVS 229
Query: 601 LDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEH 660
L G V LS YG V+ +LE
Sbjct: 230 LRG------------------------------------HFVDLSFQKYGSYVVDVLLE- 252
Query: 661 CDDANTQQIIMDEIMQ----HVCNLAQDQYGNYVI 691
+ ++++E+M+ + LA+++YGN+++
Sbjct: 253 --TKESMVVVVEELMECEGDMLMRLARNEYGNFLV 285
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 477 LDEFKTNKTRSFELSDIVDH-VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHART 535
L++ T+ R+ +L D++ H + S D YG+ IQ+ L+ K I + H
Sbjct: 178 LNDIITDAYRN-KLFDVIAHKALVLSNDAYGNFVIQRVLKLNDLRSKNNIVVSLRGHFVD 236
Query: 536 LMTDVFGNYVIQKFFEHGTESQRAQLASQLT----GHVLRLSLQMYGCRVIQKALEVVHV 591
L +G+YV+ E T+ + +L ++RL+ YG ++ KAL V
Sbjct: 237 LSFQKYGSYVVDVLLE--TKESMVVVVEELMECEGDMLMRLARNEYGNFLVCKALRVT-- 292
Query: 592 DQQTQMV 598
Q +MV
Sbjct: 293 --QKEMV 297
>sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1
Length = 641
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 42/288 (14%)
Query: 497 VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTES 556
V E + SR +Q ++ + EK +F E+ P L ++ + + IQK + ++
Sbjct: 123 VPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAVHFIQKMLDGASKQ 182
Query: 557 QRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL---DGSVMKCVHDQN 613
Q A S L GHV L ++G V++ A + Q+ +++AEL + + K + N
Sbjct: 183 QLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYSTELQLFKGLTTSN 242
Query: 614 GNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDE 673
V+ II+ Q A++ H +IQ +LE + I+D
Sbjct: 243 EKTVVD-------------IIAKLGLQKGAVNRHMTA--IIQPILE--------KGIVDH 279
Query: 674 IMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 733
+ H +I+++ K + ++RM + S + +
Sbjct: 280 TITH----------KLLIEYLTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKH 329
Query: 734 GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSL 781
GS +ER+ +I M E ++ M D FG+ V+ + DD L
Sbjct: 330 GSAKERKKIIKAM------KEHVKKMAFDQFGSMVLACIFSIVDDTKL 371
>sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1
Length = 656
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 650 GCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQ 709
R++Q ++++ +QI+ D + LA YG Y++ +L +G R T+I +
Sbjct: 170 ASRIVQTLVKYSSKDRREQIV-DALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINE 228
Query: 710 LAGQIVRMSQQKFASNVVEKCLT-FGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYV 768
L G + ++ + + + VVE + + E+RQ +I E GS A+ ++ +
Sbjct: 229 LHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSE------YAVFRETHKDLT 282
Query: 769 VQKVLET 775
++KV E+
Sbjct: 283 IEKVCES 289
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/243 (18%), Positives = 101/243 (41%), Gaps = 14/243 (5%)
Query: 545 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGS 604
++Q ++ ++ +R Q+ L G L+ YG ++ K L + ++ EL GS
Sbjct: 173 IVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGS 232
Query: 605 VMKCVHDQNGNHVIQKC-IECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD 663
+ K + + G +V++ + ++ Q +I F+G A+ + I++V E
Sbjct: 233 LRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKDLTIEKVCESS-- 290
Query: 664 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHV-----LEHGKPHERTTVITQLAGQIVRMS 718
+ II ++ + + + I H ++ E + +I L Q +
Sbjct: 291 IEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISEMIELLHEQFAELV 350
Query: 719 QQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDD 778
S+V + + +ER+L++ + ++ ++K+ +GN V +L DD
Sbjct: 351 HTPEGSDVACTLVARANAKERKLILKALKNHAEK------LIKNEYGNIVFITILNCVDD 404
Query: 779 QSL 781
L
Sbjct: 405 TVL 407
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 72/147 (48%), Gaps = 7/147 (4%)
Query: 608 CVHD----QNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD 663
C+ D + + ++Q ++ +DR + I+ + G+ L+T YG ++ ++L H
Sbjct: 160 CISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLL-HYGS 218
Query: 664 ANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHE-RTTVITQLAGQIVRMSQQKF 722
+++Q I++E+ + L + + G YV++ + HE R +I + G + ++
Sbjct: 219 RSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETH 278
Query: 723 ASNVVEKCLTFGSPEERQLLINEMLGS 749
+EK S E+R ++ ++G+
Sbjct: 279 KDLTIEKVCE-SSIEKRNIIARNLIGT 304
Score = 42.0 bits (97), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 85/206 (41%), Gaps = 16/206 (7%)
Query: 500 FSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFE-HGTESQR 558
+T YG + + L + + I E+ R LM G YV++ F + T QR
Sbjct: 200 LATSAYGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQR 259
Query: 559 AQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHD-----QN 613
Q+ + G + + + I+K E ++++ + L G++ V Q
Sbjct: 260 QQMIKEFWGSEYAVFRETHKDLTIEKVCE-SSIEKRNIIARNLIGTITASVEKGSTGFQI 318
Query: 614 GNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYG----CRVIQRVLEHCDDANTQQI 669
+ +++ ++ + I +I + Q L P G C ++ R +A +++
Sbjct: 319 LHAAMREYVKIANEKEISEMIELLHEQFAELVHTPEGSDVACTLVARA-----NAKERKL 373
Query: 670 IMDEIMQHVCNLAQDQYGNYVIQHVL 695
I+ + H L +++YGN V +L
Sbjct: 374 ILKALKNHAEKLIKNEYGNIVFITIL 399
>sp|Q15397|K0020_HUMAN Pumilio domain-containing protein KIAA0020 OS=Homo sapiens
GN=KIAA0020 PE=1 SV=3
Length = 648
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/259 (18%), Positives = 105/259 (40%), Gaps = 54/259 (20%)
Query: 498 VEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQ 557
+ F+ D +R IQ ++ E++ + F E+ L + +++KF +G++ Q
Sbjct: 173 IAFAHD--STRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQ 230
Query: 558 RAQLASQLTGHVLRLSLQMYGCRVIQKAL-EVVHVDQQTQMVAELDGSVMKCVHDQNGNH 616
A++ GHV ++ +++ A + ++Q+ + EL G+ + ++ +
Sbjct: 231 IAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQ-LYKSADHR 289
Query: 617 VIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQ 676
+ K +E P+ ++IMDE+ Q
Sbjct: 290 TLDKVLEVQPE--------------------------------------KLELIMDEMKQ 311
Query: 677 HVCNLAQDQYGNYVIQHVLEH---------GKPHERTTVITQLAGQIVRMSQQKFASNVV 727
+ +AQ + VI+H L H P R+ +I + +V ++ + V
Sbjct: 312 ILTPMAQKE---AVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHDGARVA 368
Query: 728 EKCLTFGSPEERQLLINEM 746
CL G+P++R++++ M
Sbjct: 369 MHCLWHGTPKDRKVIVKTM 387
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 661 CDDANTQQIIMD--EIMQ-HVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRM 717
CD +++ D +++Q + +A VIQ +++G +R +L +V +
Sbjct: 150 CDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVEL 209
Query: 718 SQQKFASNVVEKCLTFGSPEERQLLINEMLG 748
S+ K++ N+V+K L +GS + +I G
Sbjct: 210 SKAKYSRNIVKKFLMYGSKPQIAEIIRSFKG 240
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/308 (17%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 488 FELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQ 547
+++ ++ D + + +R IQ L+ A+ + I +++P + + + +Q
Sbjct: 163 YKVLNVGDTISKVVKAHDTARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQ 222
Query: 548 KFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMK 607
+ ++G + +A+L L GH++RL+ G ++ + +Q+ M E G + +
Sbjct: 223 RMLKYGAPATKAKLVDSLYGHIVRLAGHSIGSGLLDSMYQSATPNQRIYMRQEFYGDLYR 282
Query: 608 CVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQ 667
D N + E + +S G V A H +++ L H
Sbjct: 283 KAKDSNVKTLSDTYKEATN------MKASILGSVKANLDHVANKQLVDSALVHA------ 330
Query: 668 QIIMDEIMQHVCNLAQDQYGNYV------IQHVLEHGKPHERTTVITQLAGQIVRMSQQK 721
+M E ++ C+ +++ V + H+L + E + + +++
Sbjct: 331 --VMLEYLR-ACDEDEEKLEETVTAFAALVPHMLSTKEGSEAAVICFY---KSTPKNRRA 384
Query: 722 FASNVVEKCLTFGSPEERQLLINEMLGSTDENEP------------LQAMMKDPFGNYVV 769
N+ E L + E + + +L + D+ + L+A+M P+G V+
Sbjct: 385 IIKNIKEHLLKIANHEHGHVFLISLLNALDDTKATKKAIYDHLHGDLKALMSSPYGRRVI 444
Query: 770 QKVLETCD 777
Q ++ D
Sbjct: 445 QWLVAPGD 452
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/339 (17%), Positives = 137/339 (40%), Gaps = 58/339 (17%)
Query: 507 SRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLT 566
SR +Q ++ + +++ I E+ L +G Y+ K F++GT + + ++
Sbjct: 176 SRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIKIFKYGTPKMKEVILGEMY 235
Query: 567 GHVLRLSLQMYGCRVIQKAL-EVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECI 625
G+V+++ V++ A E ++ QQ ++ E G + D+ + I K +
Sbjct: 236 GNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYGPEFQVFKDRTQDIHIDKLLIDH 295
Query: 626 PQDR---IQFIISSFYGQVVALSTHPYGCRVIQRVL----EHCD---------------- 662
P+ R +Q + + G + S G ++ R + H D
Sbjct: 296 PEKRPSIMQNLWKTIEGSIAKGSI---GFTMVHRAMLEFINHADSNEAKELLNLTKELIY 352
Query: 663 -------------------DANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHER 703
+A +++++ + ++ A+D YG+ V+ L+
Sbjct: 353 EFVHTRDGSQVAMKLFALANAKDRKVMLKSLRPYLIETAKDSYGHLVVVAALDCTDDTIM 412
Query: 704 TTVITQ--LAGQIVRMSQQKFASNVVEKCLT------FGSPEERQLL--INEMLGSTDEN 753
T + Q G+++++S KFA ++ L + S E R+LL ++ + T +
Sbjct: 413 TGKLLQAEFEGELLKLSADKFARRILLYVLVGWEDARYFSKENRELLRSLDSLKAKTSKK 472
Query: 754 EPL--QAMMKDPFGNYVVQKVLETCDDQSLELILSRIRV 790
+P+ + +K G ++ + + D E + S++ V
Sbjct: 473 DPIVRRNELKATIGPLLISLISKAAGDMIAESLASQVLV 511
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 654 IQRVLEHCDDANTQQ---IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQL 710
+ RV++ C ++Q I E+ +L + YG Y+ + ++G P + ++ ++
Sbjct: 175 MSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIKIFKYGTPKMKEVILGEM 234
Query: 711 AGQIVRMSQQKFASNVVEKCL-TFGSPEERQLLINEMLG 748
G +V+M + + A+ VVE F + ++++ LI E G
Sbjct: 235 YGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYG 273
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 670 IMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEK 729
+ D I +V L + V+Q ++ G +R T+ +LAG V + + + + K
Sbjct: 158 LFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKYLAIK 217
Query: 730 CLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQ 770
+G+P+ +++++ EM G+ + M++ YVV+
Sbjct: 218 IFKYGTPKMKEVILGEMYGN------VVKMIRHREAAYVVE 252
>sp|Q7VKZ9|LPTD_HAEDU LPS-assembly protein LptD OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=lptD PE=3 SV=1
Length = 779
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 66/176 (37%), Gaps = 41/176 (23%)
Query: 367 FGSSLGD-SDGLQKAHLELLLAQQNQQHEMQLLGKSGGLFPGYYETQPYRLDMQYSGNTF 425
F SS G+ +DG H +L Q Q+ + + GK F + +PYR+ Q N +
Sbjct: 332 FDSSYGNVTDGYALQHFKLGYYQP--QYNLSISGKDFHTFDSFDNVKPYRVLPQIDFNYY 389
Query: 426 ANPVLPSVGSGSFPNERNSRFTSMMR-----SSMGGPMPWHLDAGINMEGRLSSSLLDEF 480
+ L + R S F + R SM +H + IN+
Sbjct: 390 QDQFLK--------DSRFSFFAQIARFENDSKSMPNAWRFHAEPIINIP----------- 430
Query: 481 KTNKTRSFELSDIVDHV--VEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHAR 534
V+H + F T Y S + QQK E TAEE + IIP +
Sbjct: 431 ------------FVNHYGSLNFETKLYASHYQQQKGENQTAEEVKKQLTRIIPQVK 474
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,378,027
Number of Sequences: 539616
Number of extensions: 12396298
Number of successful extensions: 35644
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 34548
Number of HSP's gapped (non-prelim): 407
length of query: 823
length of database: 191,569,459
effective HSP length: 126
effective length of query: 697
effective length of database: 123,577,843
effective search space: 86133756571
effective search space used: 86133756571
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)