Query 003398
Match_columns 823
No_of_seqs 322 out of 1687
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 22:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07990 NABP: Nucleic acid bi 100.0 1.2E-81 2.7E-86 681.0 21.0 337 122-491 1-385 (385)
2 KOG1488 Translational represso 100.0 2.6E-69 5.5E-74 605.6 28.6 344 471-815 154-502 (503)
3 cd07920 Pumilio Pumilio-family 100.0 8.5E-55 1.8E-59 474.0 32.9 319 489-808 3-322 (322)
4 COG5099 RNA-binding protein of 100.0 4.7E-47 1E-51 448.0 25.9 322 492-814 437-763 (777)
5 KOG2049 Translational represso 100.0 4.6E-44 1E-48 405.3 20.3 312 491-808 213-532 (536)
6 cd07920 Pumilio Pumilio-family 100.0 1.3E-39 2.8E-44 354.8 29.0 298 468-772 16-322 (322)
7 KOG1488 Translational represso 100.0 1.5E-39 3.2E-44 365.8 16.6 265 468-733 222-498 (503)
8 KOG2050 Puf family RNA-binding 100.0 3.8E-36 8.2E-41 335.1 25.8 304 456-808 134-440 (652)
9 KOG2188 Predicted RNA-binding 100.0 3.7E-29 8E-34 282.1 28.5 370 433-808 30-605 (650)
10 COG5099 RNA-binding protein of 100.0 2.4E-28 5.3E-33 289.5 17.9 253 486-739 468-730 (777)
11 KOG2049 Translational represso 99.9 5.6E-27 1.2E-31 266.5 17.7 279 525-811 211-495 (536)
12 KOG2188 Predicted RNA-binding 99.9 4.9E-21 1.1E-25 216.8 21.8 287 523-813 91-574 (650)
13 KOG2050 Puf family RNA-binding 99.8 1.6E-18 3.4E-23 194.8 24.5 245 560-812 157-406 (652)
14 KOG4574 RNA-binding protein (c 99.6 1.6E-15 3.4E-20 175.4 11.5 287 519-808 534-849 (1007)
15 KOG4574 RNA-binding protein (c 99.2 1.1E-10 2.4E-15 135.9 11.9 213 497-710 548-765 (1007)
16 PF00806 PUF: Pumilio-family R 98.0 3.2E-06 7E-11 62.9 1.9 33 529-561 2-34 (35)
17 smart00025 Pumilio Pumilio-lik 97.6 2.7E-05 5.8E-10 57.2 1.7 30 531-560 4-33 (36)
18 PF00806 PUF: Pumilio-family R 97.6 4.2E-05 9.1E-10 56.9 2.3 35 492-526 1-35 (35)
19 smart00025 Pumilio Pumilio-lik 97.4 0.00012 2.6E-09 53.7 3.2 34 493-526 2-35 (36)
20 PRK05686 fliG flagellar motor 90.0 38 0.00082 38.1 23.5 84 686-792 202-290 (339)
21 TIGR00207 fliG flagellar motor 88.0 52 0.0011 37.2 24.3 107 687-816 200-325 (338)
22 PF08144 CPL: CPL (NUC119) dom 83.9 4.7 0.0001 40.1 8.1 20 757-776 67-86 (148)
23 PF04286 DUF445: Protein of un 82.2 85 0.0018 34.8 18.4 48 700-747 289-338 (367)
24 PF08144 CPL: CPL (NUC119) dom 81.2 4.1 8.8E-05 40.5 6.6 72 706-777 58-134 (148)
25 PRK05686 fliG flagellar motor 77.9 1.3E+02 0.0027 34.0 18.1 87 505-600 80-167 (339)
26 PF12231 Rif1_N: Rap1-interact 76.3 1.5E+02 0.0032 33.9 18.1 18 725-742 277-294 (372)
27 PF09770 PAT1: Topoisomerase I 70.2 6.3 0.00014 49.4 5.6 94 496-589 576-695 (808)
28 TIGR00207 fliG flagellar motor 69.3 2E+02 0.0044 32.5 20.5 171 549-748 48-225 (338)
29 PF04286 DUF445: Protein of un 56.5 1.6E+02 0.0035 32.6 13.1 16 695-710 322-337 (367)
30 KOG1991 Nuclear transport rece 56.3 2.2E+02 0.0047 36.5 14.7 182 533-719 395-599 (1010)
31 COG1536 FliG Flagellar motor s 56.2 3.5E+02 0.0076 30.8 23.9 34 765-798 263-296 (339)
32 PF05918 API5: Apoptosis inhib 55.5 2.3E+02 0.0049 34.4 14.5 172 484-659 71-271 (556)
33 PTZ00429 beta-adaptin; Provisi 44.1 7.7E+02 0.017 31.1 24.6 21 756-776 357-377 (746)
34 KOG2171 Karyopherin (importin) 43.5 8.9E+02 0.019 31.7 17.6 129 668-816 384-529 (1075)
35 PLN03218 maturation of RBCL 1; 43.4 6.1E+02 0.013 33.3 16.7 21 510-530 444-464 (1060)
36 PF14666 RICTOR_M: Rapamycin-i 42.0 1E+02 0.0022 32.9 8.0 75 710-791 143-223 (226)
37 PF12231 Rif1_N: Rap1-interact 41.3 2.3E+02 0.0049 32.4 11.3 45 689-734 179-223 (372)
38 PF09770 PAT1: Topoisomerase I 40.9 51 0.0011 41.5 6.6 52 521-572 553-616 (808)
39 PF11573 Med23: Mediator compl 40.8 6.7E+02 0.015 33.7 16.3 257 549-808 53-384 (1341)
40 PF12069 DUF3549: Protein of u 40.0 3.3E+02 0.0071 31.0 11.9 198 554-764 124-326 (340)
41 PF11510 FA_FANCE: Fanconi Ana 39.1 4.5E+02 0.0098 28.8 12.5 66 651-720 145-214 (263)
42 TIGR00400 mgtE Mg2+ transporte 38.2 2.8E+02 0.006 32.5 11.6 56 510-565 23-78 (449)
43 PF11510 FA_FANCE: Fanconi Ana 37.9 2.7E+02 0.0059 30.5 10.6 135 509-661 39-189 (263)
44 KOG1059 Vesicle coat complex A 37.9 9.2E+02 0.02 30.3 18.8 39 528-566 218-262 (877)
45 PRK07194 fliG flagellar motor 37.4 6.5E+02 0.014 28.4 22.3 38 758-795 250-287 (334)
46 KOG1924 RhoA GTPase effector D 36.9 9.8E+02 0.021 30.3 16.7 46 492-537 717-762 (1102)
47 TIGR00400 mgtE Mg2+ transporte 36.8 1.9E+02 0.0042 33.8 10.1 45 549-594 74-119 (449)
48 KOG1992 Nuclear export recepto 36.3 9.2E+02 0.02 30.7 15.5 52 651-702 701-756 (960)
49 PF10508 Proteasom_PSMB: Prote 34.2 8.7E+02 0.019 28.9 20.1 22 544-565 80-101 (503)
50 PLN03083 E3 UFM1-protein ligas 33.1 1.1E+03 0.024 29.9 20.9 46 545-594 532-577 (803)
51 PF04078 Rcd1: Cell differenti 32.7 1.7E+02 0.0037 32.0 7.9 28 705-732 204-231 (262)
52 PF11864 DUF3384: Domain of un 31.9 6.5E+02 0.014 29.6 13.4 38 568-605 238-277 (464)
53 KOG4368 Predicted RNA binding 31.9 7.3E+02 0.016 30.2 13.2 27 690-716 166-192 (757)
54 KOG2072 Translation initiation 30.7 1.2E+03 0.027 29.6 17.8 48 534-581 172-219 (988)
55 cd03567 VHS_GGA VHS domain fam 28.1 5.9E+02 0.013 25.1 11.3 76 723-815 58-135 (139)
56 COG5240 SEC21 Vesicle coat com 27.1 1.2E+03 0.027 28.5 19.0 237 523-789 278-551 (898)
57 PF10521 DUF2454: Protein of u 26.2 7.2E+02 0.015 27.1 11.7 83 516-611 107-204 (282)
58 PF03378 CAS_CSE1: CAS/CSE pro 25.5 5E+02 0.011 30.5 10.8 46 617-662 182-232 (435)
59 PF10508 Proteasom_PSMB: Prote 25.0 1.2E+03 0.026 27.7 25.7 111 693-815 363-487 (503)
60 KOG1992 Nuclear export recepto 23.9 5.4E+02 0.012 32.6 10.8 49 508-556 702-755 (960)
61 PF10521 DUF2454: Protein of u 23.7 9.4E+02 0.02 26.2 12.0 53 577-629 95-154 (282)
62 KOG2956 CLIP-associating prote 23.0 1.3E+03 0.029 27.5 13.6 12 786-797 482-493 (516)
63 cd07439 FANCE_c-term Fanconi a 20.8 1.1E+03 0.024 25.7 14.7 77 649-726 134-214 (254)
64 PF03299 TF_AP-2: Transcriptio 20.8 6.5E+02 0.014 26.6 9.6 46 494-539 43-97 (209)
65 KOG0166 Karyopherin (importin) 20.5 1.5E+03 0.033 27.2 17.7 170 572-741 209-402 (514)
No 1
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=100.00 E-value=1.2e-81 Score=680.95 Aligned_cols=337 Identities=45% Similarity=0.583 Sum_probs=314.3
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCC-----cchhHHHHhhcCCccCccccCCcccchhhhcccCccccccccccC
Q 003398 122 RSSGSGLPPVGSRVGAVEKNGAVGSNVQND-----IELADIAATLSGLSLSNIRHADEVSHVQSQLQLNPDNQSDFLYDT 196 (823)
Q Consensus 122 r~~~~~~~~iG~~~~~~~k~~~~~~~~~~~-----~e~~d~~~~ls~~~ls~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 196 (823)
|+|||||||||+||+++|||+++|+++||+ +|+|||+|||||||||+++++++|+|+|||+|+|||||++|+|++
T Consensus 1 R~PSp~lpPIG~Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~~ 80 (385)
T PF07990_consen 1 RAPSPCLPPIGVRVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFNV 80 (385)
T ss_pred CCCCCCCCCccccccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhcC
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccccccccccccccccCCCCCCCCccccccCCcccccccCC-CCccccccCCCCCCCCCCC-C
Q 003398 197 SNGHNQSMKQQFMDKSTADNLAFSTHYIDFTRKNGIVPNLNASAINSNGQVNILKRTS-SPNLYSKMNSTGFGGSSRS-V 274 (823)
Q Consensus 197 ~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 274 (823)
|++|+| .+||.++++++++++.. +++++..+ ++++|+|++.++.+++++. +
T Consensus 81 q~~q~~-~~Qq~~~~~se~~~l~~--------------------------~e~~~a~~~~~~s~~~~~~~s~~~~~g~~~ 133 (385)
T PF07990_consen 81 QGGQNQ-GNQQSYMKKSESGHLNA--------------------------PELQKAAFPSGNSYFKNSNASKLSGGGGSP 133 (385)
T ss_pred ccchhh-hhhHHHhhccchhhccc--------------------------cccccccCCCccccccCCCcccccCCCCCC
Confidence 999999 89999999999988843 33444555 6788888888888888885 7
Q ss_pred CCCcCCCCCCCCCCCCCCCccCCcccccccccCCCCCc-----------------------------------cCccccc
Q 003398 275 GRQQNANISSLDFTNVSGDYSVNQKLNSLVNHHFDTVG-----------------------------------IGATRNL 319 (823)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~ 319 (823)
..||+++.+++.+ +||++||++|+||.+++++|+ .+|+|++
T Consensus 134 ~~~q~~~~~n~~~----~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g~~~~s~~~~~~~d~~~l 209 (385)
T PF07990_consen 134 FPYQNSDNPNSSF----GGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLGGGLDSGGNQGASDGQNL 209 (385)
T ss_pred CcccCCCcccccc----cccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccCCcccccccccccchhhh
Confidence 7799988888876 899999999999999988864 2699999
Q ss_pred ccccccc-ccCCCCCCCChhHHhhhcccchhhhhhhhccCCcccccCCCCCCCCCChhhHHHHHHHHHHHHhhhhhhhcc
Q 003398 320 NGMVNQV-ALDFHSPPMDPRYAQYLQRTSDYATRSAASASDPFAARNHFGSSLGDSDGLQKAHLELLLAQQNQQHEMQLL 398 (823)
Q Consensus 320 ~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (823)
+|+|||+ |.++|+||+||+|+||||++++++++.|+ +.||+++|+++|++++|++++||+||++||++||+|||+|+
T Consensus 210 ~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~-~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~~P~- 287 (385)
T PF07990_consen 210 NRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAA-QNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYGVPL- 287 (385)
T ss_pred hhhcccccCcccCCCCCCchHHHHhccccchhhhhhc-cCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhCCcc-
Confidence 9999997 69999999999999999999999998877 99999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC----CCCCCCCCCCccccccccccCCCC-CCCCCccCcCCCcchhhh
Q 003398 399 GKSGGLFPGYYETQPYRLDMQYSGNTFANPVLP----SVGSGSFPNERNSRFTSMMRSSMG-GPMPWHLDAGINMEGRLS 473 (823)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----g~g~~~~~~~r~~r~~s~~r~~~g-~~~~w~~~r~~~~~~~~~ 473 (823)
.|+|+++++|||+|.||++|+|||+|+++|++| |+|+|+|+++|++||++++|+..| .++.|+.|.+.++++++.
T Consensus 288 ~~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~d~~~~ 367 (385)
T PF07990_consen 288 KKSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNMDENFA 367 (385)
T ss_pred ccCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCcccccccccccccccccccccccccch
Confidence 999999999999999999999999999999999 588999999999999999999955 999999999999999999
Q ss_pred hHHHHHhhccccccccHh
Q 003398 474 SSLLDEFKTNKTRSFELS 491 (823)
Q Consensus 474 s~LLeef~s~e~k~~~L~ 491 (823)
+.||||||++|+|+|+|+
T Consensus 368 sSlLEEFKsNKtr~FELS 385 (385)
T PF07990_consen 368 SSLLEEFKSNKTRSFELS 385 (385)
T ss_pred hHHHHHHhcCCccceecC
Confidence 999999999999999873
No 2
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-69 Score=605.64 Aligned_cols=344 Identities=58% Similarity=0.948 Sum_probs=328.4
Q ss_pred hhhhHHHHHhhcc-ccccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCH-HHHHHHHHHHhHhHHHhhccccccchhhH
Q 003398 471 RLSSSLLDEFKTN-KTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATA-EEKTRIFPEIIPHARTLMTDVFGNYVIQK 548 (823)
Q Consensus 471 ~~~s~LLeef~s~-e~k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~-Eqr~~If~EL~~~~~~L~tD~~GshVIQK 548 (823)
..++.+++++.+. ..+.+.+.++.|+++++++||+||||||+.|+.+++ +++..||+||.+.+.+||+|.||||||||
T Consensus 154 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQk 233 (503)
T KOG1488|consen 154 TGPSFLLDPFRSNSLSKTLELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQK 233 (503)
T ss_pred CCCCccccccccccccccccccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 3456677777777 667788889999999999999999999999999998 99999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChh
Q 003398 549 FFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQD 628 (823)
Q Consensus 549 LLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e 628 (823)
+||+++++++..|...+++++.+||.|+||||||||+|+..+.+++.+|++||.+++.+|++|++||||||||||+.+++
T Consensus 234 ffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~p~~ 313 (503)
T KOG1488|consen 234 FFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIETLPPD 313 (503)
T ss_pred hhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccceehhhhhhccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhh--hhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHHHH
Q 003398 629 RIQFIISSFYG--QVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTV 706 (823)
Q Consensus 629 ~~~~Ii~~f~g--~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~~I 706 (823)
.+.||++.|.+ ++..+++|+|||+|||++||+|..++++ .++++|..++..|+.|+||||||||+|++++++++..|
T Consensus 314 ~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~-~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I 392 (503)
T KOG1488|consen 314 AWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQ-PLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTII 392 (503)
T ss_pred HHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhh-HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhH
Confidence 99999999999 9999999999999999999999876654 49999999999999999999999999999999999999
Q ss_pred HHHhHHhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCc-hhHHHhhcCcchHHHHHHHHhcCChhHHHHHH
Q 003398 707 ITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDEN-EPLQAMMKDPFGNYVVQKVLETCDDQSLELIL 785 (823)
Q Consensus 707 i~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~-e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il 785 (823)
++.|.++++.|+++||+|+|||+|+.++++.+|..|++|++...++. +.|..||+|+|||||||++|+.|++.+|+.|+
T Consensus 393 ~~~l~~~ll~~Sq~KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~ 472 (503)
T KOG1488|consen 393 IKCLLGNLLSMSQHKFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQRELIK 472 (503)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999886654 78999999999999999999999999999999
Q ss_pred HHHHHhHHHHhhCCCchHHHHHHHHHHHcC
Q 003398 786 SRIRVHLNVLKKYTYGKHIVSRIEKLIATG 815 (823)
Q Consensus 786 ~eLk~~L~~La~~~yGk~Vl~~lek~~~~g 815 (823)
.+|++|+..|++++|||||+++|||+...+
T Consensus 473 ~rI~~h~~~Lrk~syGKhIia~lek~~~~~ 502 (503)
T KOG1488|consen 473 SRVKPHASRLRKFSYGKHIIAKLEKLRSKG 502 (503)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHhcccC
Confidence 999999999999999999999999987543
No 3
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=8.5e-55 Score=474.02 Aligned_cols=319 Identities=57% Similarity=0.952 Sum_probs=305.2
Q ss_pred cHhhhH-HHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhh
Q 003398 489 ELSDIV-DHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTG 567 (823)
Q Consensus 489 ~L~eI~-GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g 567 (823)
.++++. |+++++|+|++|||+||++|++++++++..||+++.+++.+||+|+|||||||++|++++++++..|++.+.+
T Consensus 3 ~~~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~ 82 (322)
T cd07920 3 TLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILG 82 (322)
T ss_pred CHHhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcC
Q 003398 568 HVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTH 647 (823)
Q Consensus 568 ~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~h 647 (823)
++.+|+.|+|||||||++|+.+..+++..|+++|.+++..|++|++||||+|+++++++++.++.|++.+.+++..++.|
T Consensus 83 ~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~ 162 (322)
T cd07920 83 HVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTH 162 (322)
T ss_pred HHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHH
Q 003398 648 PYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVV 727 (823)
Q Consensus 648 k~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VV 727 (823)
++||+|+|++++.+. ++.+..+++++.+++..|+.|+|||||||++|+.+.++.++.|++.+.+++++|+++||||+||
T Consensus 163 ~~G~~vvq~~l~~~~-~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vv 241 (322)
T cd07920 163 PYGCRVIQRCLEHCS-EEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVV 241 (322)
T ss_pred ccccHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 999999999999885 5667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhhCCCchHHHHH
Q 003398 728 EKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSR 807 (823)
Q Consensus 728 EkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~~~yGk~Vl~~ 807 (823)
|+||+.++++.|+.|+++|+....+++.+.+|++|+|||||||++|+.++++.++.|+.+|++++.+|+.++||++|+++
T Consensus 242 e~~l~~~~~~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~~~~~~L~~~~~G~~v~~~ 321 (322)
T cd07920 242 EKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRPHLPSLRKSPYGKHILAK 321 (322)
T ss_pred HHHHHHCCHHHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHh
Confidence 99999999999999999999753224689999999999999999999999999999999999999999999999999776
Q ss_pred H
Q 003398 808 I 808 (823)
Q Consensus 808 l 808 (823)
+
T Consensus 322 ~ 322 (322)
T cd07920 322 L 322 (322)
T ss_pred C
Confidence 3
No 4
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-47 Score=447.96 Aligned_cols=322 Identities=40% Similarity=0.671 Sum_probs=300.0
Q ss_pred hhHHHHHHH-hhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHH
Q 003398 492 DIVDHVVEF-STDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVL 570 (823)
Q Consensus 492 eI~GkiveL-A~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~ 570 (823)
++-+....+ ++||+|||+||++|+.-+.+++..|+.|+.+...+||.|.||||||||+||+++++|+..++..+.+++.
T Consensus 437 ~~l~~~~~~~~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~ 516 (777)
T COG5099 437 DILGPSIIVSCKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLV 516 (777)
T ss_pred ccccCccccccCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHH
Confidence 333334444 4999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccchHHHHhhhhcChHHHH-HHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcC
Q 003398 571 RLSLQMYGCRVIQKALEVVHVDQQT-QMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPY 649 (823)
Q Consensus 571 ~Ls~h~yGSrVVQklLe~~~~eq~~-~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~ 649 (823)
.++.|+|||||+||+++++..+.+. .|+++|.+.+..|++|++||||||||+++...+..++|++.+..++.++++|+|
T Consensus 517 ~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~ 596 (777)
T COG5099 517 SLSVHKYGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRY 596 (777)
T ss_pred HhhccccccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhcccc
Confidence 9999999999999999999988776 889999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHHHHHHHhHH-hHHhhcCCchHHHHHH
Q 003398 650 GCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAG-QIVRMSQQKFASNVVE 728 (823)
Q Consensus 650 Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~g-~iv~Ls~~K~GS~VVE 728 (823)
||+|||+|+|+|..+. .+.++++|..+...|++|+||||||||+|+.+.+..++.|+..+.. ++++|+++||||+|||
T Consensus 597 Gs~vvq~~le~~~~~~-~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVe 675 (777)
T COG5099 597 GSRVVQRCLENCNSED-KENLVEEIISNSKYLSQDQYGNYVVQHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVE 675 (777)
T ss_pred ccHHHHHHHHhccHhH-HHHHHHHHHHHHHhhccCCcchhhhhHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997555 4679999999999999999999999999999999999999999988 9999999999999999
Q ss_pred HHHhhCCHHH-HHHHHHHHhcCCCCchh-HHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhhCCCchHHHH
Q 003398 729 KCLTFGSPEE-RQLLINEMLGSTDENEP-LQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVS 806 (823)
Q Consensus 729 kcL~~a~~k~-Rk~Ii~eLl~~~~~~e~-L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~~~yGk~Vl~ 806 (823)
||+.++...+ |++|+.++.....+++. +..|+.|+|||||+|++++......|..+.+.++.++..|...+||.||.+
T Consensus 676 K~i~~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~~~~~l~~~~i~~~~~~l~~s~~g~~i~~ 755 (777)
T COG5099 676 KCIKYASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPEIQRSLLARAIKKVIPSLKKSMYGQHILA 755 (777)
T ss_pred HHHhcCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCchhhHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 9999998877 59999999873333344 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 003398 807 RIEKLIAT 814 (823)
Q Consensus 807 ~lek~~~~ 814 (823)
.||+..-.
T Consensus 756 ~le~~~~~ 763 (777)
T COG5099 756 LLEKVGSS 763 (777)
T ss_pred HHHHHhcc
Confidence 99987543
No 5
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-44 Score=405.29 Aligned_cols=312 Identities=30% Similarity=0.524 Sum_probs=290.5
Q ss_pred hhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhh---
Q 003398 491 SDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTG--- 567 (823)
Q Consensus 491 ~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g--- 567 (823)
.++.|.+..+|+|++|||++|+.+..++.+....||.|+..++.+||.|+||++++||+++.|+++|+..|+..+..
T Consensus 213 ~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~ 292 (536)
T KOG2049|consen 213 VEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPR 292 (536)
T ss_pred hccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCcc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred hHHHhhhccccchHHHHhhhhcChH-HHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHhhc
Q 003398 568 HVLRLSLQMYGCRVIQKALEVVHVD-QQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALST 646 (823)
Q Consensus 568 ~~~~Ls~h~yGSrVVQklLe~~~~e-q~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~ 646 (823)
.|+.++.++||+++||++++..... |..-+++.|...+..|++|.||+||||+||+..+++..+++++.+...+.++|+
T Consensus 293 ~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~~~c~~iA~ 372 (536)
T KOG2049|consen 293 LFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAILRYCLDLAT 372 (536)
T ss_pred ceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHHHHHHHHHHH
Confidence 6999999999999999999887654 455666889999999999999999999999999999999999999999999999
Q ss_pred CcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHH
Q 003398 647 HPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNV 726 (823)
Q Consensus 647 hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~V 726 (823)
|.+||+|||+||....+ +.++.+++++..+...|+.|+|||||||++|+.-.+.....|++.|.+++++|+.+||||+|
T Consensus 373 ~~hGCcvLq~cl~~~~~-~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~g~~veLS~qKfgS~v 451 (536)
T KOG2049|consen 373 DQHGCCVLQKCLDYSRG-EQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLRGHYVELSFQKFGSHV 451 (536)
T ss_pred hccccchhHHHhcchhH-HHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhhhHHHHHHHHhhccHH
Confidence 99999999999999755 67888999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCCh----hHHHHHHHHHHHhHHHHhhCCCch
Q 003398 727 VEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDD----QSLELILSRIRVHLNVLKKYTYGK 802 (823)
Q Consensus 727 VEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~dd----t~rk~Il~eLk~~L~~La~~~yGk 802 (823)
|||||+.+... +..||.||++. +.+..|+.|+|||||||++|...++ ..+..++.++++.+..|+..++|+
T Consensus 452 VEk~L~~~~~~-~~~iV~ell~~----~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~ 526 (536)
T KOG2049|consen 452 VEKLLKVRESS-RAQIVLELLSC----DELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGN 526 (536)
T ss_pred HHHHHhcCcch-hhHHHHHHHcc----ccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCcccc
Confidence 99999988544 48899999976 5699999999999999999999986 558899999999999999999999
Q ss_pred HHHHHH
Q 003398 803 HIVSRI 808 (823)
Q Consensus 803 ~Vl~~l 808 (823)
++..+.
T Consensus 527 ~~~~~~ 532 (536)
T KOG2049|consen 527 IALIKD 532 (536)
T ss_pred eeeehh
Confidence 986543
No 6
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=1.3e-39 Score=354.76 Aligned_cols=298 Identities=24% Similarity=0.463 Sum_probs=280.6
Q ss_pred cchhhhhHHHHHhhc---cccccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccc
Q 003398 468 MEGRLSSSLLDEFKT---NKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNY 544 (823)
Q Consensus 468 ~~~~~~s~LLeef~s---~e~k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~Gsh 544 (823)
..+...+++++.+.. .+++...++++.+++.++++|++|++++|++|++++++++..|++++.+++..|++|+||+|
T Consensus 16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~ 95 (322)
T cd07920 16 AKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCR 95 (322)
T ss_pred cCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHH
Confidence 466677888886543 45677778899999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHh
Q 003398 545 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIEC 624 (823)
Q Consensus 545 VIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~ 624 (823)
||||++++++++++..|++++.+++.+|+.|.||++|||++++.++++++..|+++|.+++.+++.|++|++|+|++|+.
T Consensus 96 vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~ 175 (322)
T cd07920 96 VIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEH 175 (322)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHH
Q 003398 625 IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERT 704 (823)
Q Consensus 625 ~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~ 704 (823)
.+++.++.|++.+.+++..|+.+++|++|||++|++.. ++.+..+++.+.+++..|+.++||++|++++|+.+.++.++
T Consensus 176 ~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~~-~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~~~~ 254 (322)
T cd07920 176 CSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGD-PDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKEERE 254 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHHHHH
Confidence 99999999999999999999999999999999999974 66678899999999999999999999999999999999999
Q ss_pred HHHHHhH------HhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHH
Q 003398 705 TVITQLA------GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKV 772 (823)
Q Consensus 705 ~Ii~~L~------g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqkl 772 (823)
.+++.+. +++.+|+.++||+.||+++|..+++..++.|+..|. +++..|..++||+.|+.++
T Consensus 255 ~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~------~~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 255 LIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIR------PHLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHH------HHHHHHcCCCcHHHHHHhC
Confidence 9999995 489999999999999999999999999999999996 6699999999999999874
No 7
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-39 Score=365.79 Aligned_cols=265 Identities=29% Similarity=0.457 Sum_probs=244.3
Q ss_pred cchhhhhHHHHHhh---ccccccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccc
Q 003398 468 MEGRLSSSLLDEFK---TNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNY 544 (823)
Q Consensus 468 ~~~~~~s~LLeef~---s~e~k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~Gsh 544 (823)
|.+.|...+++.|. +.+++......+.|++.+||.|.+||||||+.|+.-+.++..+++.||.+++..+++|++|||
T Consensus 222 ~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnH 301 (503)
T KOG1488|consen 222 MTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNH 301 (503)
T ss_pred HHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccce
Confidence 34444555555433 334555566789999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCCHHHHHHHHHHHhh--hHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHH
Q 003398 545 VIQKFFEHGTESQRAQLASQLTG--HVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCI 622 (823)
Q Consensus 545 VIQKLLe~~s~eqr~~Li~~L~g--~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~L 622 (823)
||||+||..+++.+..|++.+.+ ++..|+.|+|||||||+++|.|.++++..+++||..++..|+.|+|||||||++|
T Consensus 302 ViQK~ie~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVi 381 (503)
T KOG1488|consen 302 VIQKCIETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVI 381 (503)
T ss_pred ehhhhhhccChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHH-------HHHHHhcCCCccHHHHHHH
Q 003398 623 ECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQ-------HVCNLAQDQYGNYVIQHVL 695 (823)
Q Consensus 623 e~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~-------~l~~La~DqyGNyVVQ~lL 695 (823)
+++.++.+..|++.+.++++.+++|||+|+||++||+++. +..+..|++||.. .+..|++|+|||||||++|
T Consensus 382 e~g~~~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~-~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi 460 (503)
T KOG1488|consen 382 EHGSPYRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAP-PLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMI 460 (503)
T ss_pred hcCChhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999985 5667889999885 4889999999999999999
Q ss_pred hcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhh
Q 003398 696 EHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTF 733 (823)
Q Consensus 696 e~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~ 733 (823)
+.+.+.+|+.|+.+++.++..|-..+||-|+++++=+.
T Consensus 461 ~~~~~~q~~~i~~rI~~h~~~Lrk~syGKhIia~lek~ 498 (503)
T KOG1488|consen 461 DICGPEQRELIKSRVKPHASRLRKFSYGKHIIAKLEKL 498 (503)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHh
Confidence 99999999999999999999999999999999997654
No 8
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-36 Score=335.14 Aligned_cols=304 Identities=20% Similarity=0.358 Sum_probs=263.6
Q ss_pred CCCCCccCcCCCcchhhhhHHHHHhhccccccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHH
Q 003398 456 GPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHART 535 (823)
Q Consensus 456 ~~~~w~~~r~~~~~~~~~s~LLeef~s~e~k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~ 535 (823)
..+.|+..|.++..++.|.+|+.|+.. .|+|+|..++..|+.|||||++++++++++|+.||+||.|.+++
T Consensus 134 ~kslWEkLR~k~~~ke~R~klv~el~~---------likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~ 204 (652)
T KOG2050|consen 134 AKSLWEKLRRKTTPKEERDKLVSELYK---------LIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVE 204 (652)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHH---------HHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHH
Confidence 346799999988899999999999776 88999999999999999999999999999999999999999999
Q ss_pred hhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhh-hhcChHHHHHHHHhhhhhHHHHhhcccC
Q 003398 536 LMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKAL-EVVHVDQQTQMVAELDGSVMKCVHDQNG 614 (823)
Q Consensus 536 L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklL-e~~~~eq~~~Ll~EL~~~i~~LvkDq~G 614 (823)
||+++||.|+|||||.|+++.|+..|++.++||++.|.+|+.|+.||..++ ++++.+||..|++||+|..+.++++.+-
T Consensus 205 l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~ 284 (652)
T KOG2050|consen 205 LAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSND 284 (652)
T ss_pred HHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999999999 5589999999999999999999999544
Q ss_pred ChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHH
Q 003398 615 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHV 694 (823)
Q Consensus 615 nhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~l 694 (823)
-+ |.++++. .++.+..|+..+...+.. +++.. .....|+.. ++-..
T Consensus 285 ~T-l~kil~~-~pekk~~I~~~l~~~I~~-------------v~eKg---~v~~tivHk----------------~mlEy 330 (652)
T KOG2050|consen 285 KT-LDKILAE-APEKKASILRHLKAIITP-------------VAEKG---SVDHTIVHK----------------LMLEY 330 (652)
T ss_pred cc-HHHHHHh-ChHhHHHHHHHHHHHhHH-------------Hhhcc---hhHHHHHHH----------------HHHHH
Confidence 44 4444443 355566666666543322 22211 011112221 23334
Q ss_pred HhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHh
Q 003398 695 LEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLE 774 (823)
Q Consensus 695 Le~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~ 774 (823)
|..++++.+.++++.+.+.++.|.+++.||+|..+|++++++++|+.|++.|. +++..+++|+|||.|+.++|+
T Consensus 331 ~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K------~h~~K~A~~~yGh~vlia~ld 404 (652)
T KOG2050|consen 331 LTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMK------EHVEKIANDEYGHLVLIALLD 404 (652)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHH------HHHHHHHhhccCceehhhhhc
Confidence 56788899999999999999999999999999999999999999999999995 789999999999999999999
Q ss_pred cCChhH--HHHHHHHHHHhHHHHhhCCCchHHHHHH
Q 003398 775 TCDDQS--LELILSRIRVHLNVLKKYTYGKHIVSRI 808 (823)
Q Consensus 775 ~~ddt~--rk~Il~eLk~~L~~La~~~yGk~Vl~~l 808 (823)
++|||. .+.|+.+++.++..|..++||++|+..+
T Consensus 405 c~DDT~l~kk~i~~e~~~el~~li~Dk~Grrv~lyl 440 (652)
T KOG2050|consen 405 CTDDTKLLKKLIYDELKSELKSLISDKYGRRVILYL 440 (652)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhh
Confidence 999998 7999999999999999999999998766
No 9
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.7e-29 Score=282.10 Aligned_cols=370 Identities=20% Similarity=0.294 Sum_probs=292.9
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCc-cCcCCC-cchhhhhHHHHHhhcccccccc-----HhhhHHHHHHHhhCCC
Q 003398 433 VGSGSFPNERNSRFTSMMRSSMGGPMPWH-LDAGIN-MEGRLSSSLLDEFKTNKTRSFE-----LSDIVDHVVEFSTDQY 505 (823)
Q Consensus 433 ~g~~~~~~~r~~r~~s~~r~~~g~~~~w~-~~r~~~-~~~~~~s~LLeef~s~e~k~~~-----L~eI~GkiveLA~Dq~ 505 (823)
++.|..++.|++|.+...++..+....++ .|++.. ||++..+.+-..|...+++.++ ++|+.|++.+++++|.
T Consensus 30 skkp~~g~~~~~~~~~~~~~e~~~q~~fg~~dpE~~~YF~~a~~a~~~~~~~~eEr~~~f~n~i~ee~~grel~l~tnqi 109 (650)
T KOG2188|consen 30 SKKPQEGRNENFRPALAKNSEFGPQNFFGGLDPEELGYFRRAESAFKGGFERGEERNRMFVNSIFEEVYGRELDLATNQI 109 (650)
T ss_pred ccCcCcccCCCCCCcccccccCCCCCCCCCcChhhhhHHHHHHHHhhcCccccccceeeeehhHHHHhccceeehhccch
Confidence 45556668888999999888887554444 446644 8998888887777777776654 4789999999999999
Q ss_pred cCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcC--------------------------CHHHHH
Q 003398 506 GSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHG--------------------------TESQRA 559 (823)
Q Consensus 506 GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~--------------------------s~eqr~ 559 (823)
+|.++|.++..++..|.+.+|.++.++++.+++|+||+||+|++++.. -++...
T Consensus 110 ~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~dea~~~ke~p~~t~e~~~~ 189 (650)
T KOG2188|consen 110 GSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSEDEAAVEKEGPFVTCENLLL 189 (650)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhcccccCcccccchHHH
Confidence 999999999999999999999999999999999999999999999861 144566
Q ss_pred HHHHHHhhhHH-HhhhccccchHHHHhhhhcCh-----------------------------------------------
Q 003398 560 QLASQLTGHVL-RLSLQMYGCRVIQKALEVVHV----------------------------------------------- 591 (823)
Q Consensus 560 ~Li~~L~g~~~-~Ls~h~yGSrVVQklLe~~~~----------------------------------------------- 591 (823)
.++.++.+++. .|+.|.+|+||+++++-.+..
T Consensus 190 ~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pqsFp~~l~~~i~~~l~ 269 (650)
T KOG2188|consen 190 LMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDWDAVTTPPQSFPQRLIVWICTGLS 269 (650)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCcchhhhHHHHHHHHHhhccccchhhhhcChhhccHHHHHHHhhhcc
Confidence 78888999999 999999999999999865430
Q ss_pred -----------HHHHHHHHh-------------hh-------------------------------hhHHHHhhcccCCh
Q 003398 592 -----------DQQTQMVAE-------------LD-------------------------------GSVMKCVHDQNGNH 616 (823)
Q Consensus 592 -----------eq~~~Ll~E-------------L~-------------------------------~~i~~LvkDq~Gnh 616 (823)
+.+...++. +. +-...+..|+.|+|
T Consensus 270 ~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSr 349 (650)
T KOG2188|consen 270 ALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSR 349 (650)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcccccccHHHHHHHhcCcccH
Confidence 000000000 00 01112677899999
Q ss_pred HHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCC-----------
Q 003398 617 VIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQ----------- 685 (823)
Q Consensus 617 VIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~Dq----------- 685 (823)
+++.+++.+++.....+...|.+++..|+.|++++++||++|+|.++.+....|++|+...+..|....
T Consensus 350 llE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~ 429 (650)
T KOG2188|consen 350 LLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAA 429 (650)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHH
Confidence 999999999999998888999999999999999999999999999888777888888766644443332
Q ss_pred ------------------------------------------------------CccHHHHHHHhcCCchh---HHHHHH
Q 003398 686 ------------------------------------------------------YGNYVIQHVLEHGKPHE---RTTVIT 708 (823)
Q Consensus 686 ------------------------------------------------------yGNyVVQ~lLe~~~~~~---r~~Ii~ 708 (823)
-|.-++|+++.+.++.. -.-+++
T Consensus 430 ~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~ 509 (650)
T KOG2188|consen 430 SARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLS 509 (650)
T ss_pred HHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHh
Confidence 23333444444333211 122333
Q ss_pred HhHHhHHhhcCCchHHHHHHHHHhh--CCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHH
Q 003398 709 QLAGQIVRMSQQKFASNVVEKCLTF--GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILS 786 (823)
Q Consensus 709 ~L~g~iv~Ls~~K~GS~VVEkcL~~--a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~ 786 (823)
...+++.+++++.+||||||.+|.. .+++.|++||..|-+ ...+|+.+.+|++|+.++|+.+++..|+.|++
T Consensus 510 L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g------~~~~La~~~~GSrv~eK~wea~~~~~k~rIak 583 (650)
T KOG2188|consen 510 LSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDG------SFVTLALSTFGSRVFEKCWEATDVLYKERIAK 583 (650)
T ss_pred hhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhc------cchheeecCcccHHHHHHHHHhhHHHHHHHHH
Confidence 3467899999999999999999998 678889999998853 47899999999999999999999999999999
Q ss_pred HHHHhHHHHhhCCCchHHHHHH
Q 003398 787 RIRVHLNVLKKYTYGKHIVSRI 808 (823)
Q Consensus 787 eLk~~L~~La~~~yGk~Vl~~l 808 (823)
+|...-..++.++||+.|+.+.
T Consensus 584 eL~~~~~~vk~s~~gk~v~~~~ 605 (650)
T KOG2188|consen 584 ELVGIHNDVKSSKYGKFVMLNW 605 (650)
T ss_pred HHHhhccccccCcchHHHHHhc
Confidence 9999999999999999997654
No 10
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.4e-28 Score=289.51 Aligned_cols=253 Identities=20% Similarity=0.364 Sum_probs=120.7
Q ss_pred ccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHH-HHHHHHH
Q 003398 486 RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQ-RAQLASQ 564 (823)
Q Consensus 486 k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eq-r~~Li~~ 564 (823)
...+..++...+++++.|..|-.++|+++|+++++||..++..+.+++..|..++||+||+||++++..++. ...|+++
T Consensus 468 ~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~ 547 (777)
T COG5099 468 IEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTRVLQKAIDIVSTDIQISLLVEE 547 (777)
T ss_pred HHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccHHHHHHHhccCchhhHHHHHHH
Confidence 333444444455555555555555555555555555555555555555555555555555555555543332 2244555
Q ss_pred HhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHh
Q 003398 565 LTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVAL 644 (823)
Q Consensus 565 L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~L 644 (823)
+.+.+..+++|.+|+|||||+++.+..+...-|++.+.+++.++..+++|++|||.|+|.+..+..+.|++.+...+..|
T Consensus 548 l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le~~~~~~~~~~~~~Ii~~~~~L 627 (777)
T COG5099 548 LRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLENCNSEDKENLVEEIISNSKYL 627 (777)
T ss_pred hhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccHHHHHHHHhccHhHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555544444444444444444445555555555555555444444444444444444444
Q ss_pred hcCcCcchhHHHHHhhCCCHHHHHHHHHHHHH-HHHHHhcCCCccHHHHHHHhcCCchh-HHHHHHHhHH-------hHH
Q 003398 645 STHPYGCRVIQRVLEHCDDANTQQIIMDEIMQ-HVCNLAQDQYGNYVIQHVLEHGKPHE-RTTVITQLAG-------QIV 715 (823)
Q Consensus 645 s~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~-~l~~La~DqyGNyVVQ~lLe~~~~~~-r~~Ii~~L~g-------~iv 715 (823)
+++.+|.+|||.+|+.+..+.+ +.++..++. ++.+|+.|+||+-||+++|..+.+.+ |+.|+..+.. -+.
T Consensus 628 ~~dq~GNyvvq~il~~g~~~~k-~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~~~~~~~~ril~~~~~~~~~~~~~l~ 706 (777)
T COG5099 628 SQDQYGNYVVQHILDNGAEPNK-ERIIIKLLSKRVVELSTHKFASNVVEKCIKYASDSFKRSRILNELTNRGIEKPGFLM 706 (777)
T ss_pred ccCCcchhhhhHHhhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhcccccCChHHH
Confidence 4555555555555544433332 223333333 44455555555555555554444333 2444444432 134
Q ss_pred hhcCCchHHHHHHHHHhhCCHHHH
Q 003398 716 RMSQQKFASNVVEKCLTFGSPEER 739 (823)
Q Consensus 716 ~Ls~~K~GS~VVEkcL~~a~~k~R 739 (823)
.|..+.||-.|++..+..+...+|
T Consensus 707 ~i~~d~y~Nyv~q~~~~~s~~~~~ 730 (777)
T COG5099 707 LILDDQYANYVIQYLLDVSPEIQR 730 (777)
T ss_pred HHHHhhhcchHHHHHHhhCchhhH
Confidence 444444455555555544444433
No 11
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.6e-27 Score=266.52 Aligned_cols=279 Identities=21% Similarity=0.323 Sum_probs=241.6
Q ss_pred HHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhh-
Q 003398 525 IFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG- 603 (823)
Q Consensus 525 If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~- 603 (823)
.+.++.+.+..+++|++|.+++|+++..++......|+.++..++.+|..+++|..++|+++++++.+++.+|+.-+..
T Consensus 211 ~~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~ 290 (536)
T KOG2049|consen 211 SMVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSD 290 (536)
T ss_pred hhhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 4456668899999999999999999999999999999999999999999999999999999999999999888887765
Q ss_pred --hHHHHhhcccCChHHHHHHHhCC-hhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHH
Q 003398 604 --SVMKCVHDQNGNHVIQKCIECIP-QDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCN 680 (823)
Q Consensus 604 --~i~~LvkDq~GnhVIQk~Le~~~-~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~ 680 (823)
.++.++.+.+|+++||+++++.. .+.+..+++++...+..|.++++|.+|||+||.... +...+.+.+.+.+.+..
T Consensus 291 p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~-~~~~~~l~e~i~~~c~~ 369 (536)
T KOG2049|consen 291 PRLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFS-KEKNEFLYEAILRYCLD 369 (536)
T ss_pred ccceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcC-chhhhHHHHHHHHHHHH
Confidence 57788899999999999999664 455778889999999999999999999999998864 45567788999999999
Q ss_pred HhcCCCccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhh
Q 003398 681 LAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMM 760 (823)
Q Consensus 681 La~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La 760 (823)
+|.|++|..|+|++|......+|+.+++.+..+-..|+.+.||-.||+.+++.-....-..|+..|. .+..+|+
T Consensus 370 iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~L~~~~~t~~i~~~L~------g~~veLS 443 (536)
T KOG2049|consen 370 LATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNYVVQYVLELNDPSCTVNIAEKLR------GHYVELS 443 (536)
T ss_pred HHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccchhhhhhhhcCcchHHHHHHhhh------hHHHHHH
Confidence 9999999999999999998999999999999999999999999999999999877777788888886 4588999
Q ss_pred cCcchHHHHHHHHhcCChhHHHHHHHHHHH--hHHHHhhCCCchHHHHHHHHH
Q 003398 761 KDPFGNYVVQKVLETCDDQSLELILSRIRV--HLNVLKKYTYGKHIVSRIEKL 811 (823)
Q Consensus 761 ~D~~GnyVIqklL~~~ddt~rk~Il~eLk~--~L~~La~~~yGk~Vl~~lek~ 811 (823)
...||+|||+++|++..... +.|+.++.. ++..|+.++||-.|+.+..+.
T Consensus 444 ~qKfgS~vVEk~L~~~~~~~-~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~v 495 (536)
T KOG2049|consen 444 FQKFGSHVVEKLLKVRESSR-AQIVLELLSCDELDRLLRDPYGNYVIQTALRV 495 (536)
T ss_pred HHhhccHHHHHHHhcCcchh-hHHHHHHHccccHHHHhhCccchHHHHHHHHH
Confidence 99999999999998876553 667777776 999999999999997665543
No 12
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.9e-21 Score=216.82 Aligned_cols=287 Identities=18% Similarity=0.286 Sum_probs=215.4
Q ss_pred HHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcC------------
Q 003398 523 TRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVH------------ 590 (823)
Q Consensus 523 ~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~------------ 590 (823)
+.||+|..+....|++++.||+++|+++..++..|...++..+.+++..+++|++|+||+|++++.+.
T Consensus 91 n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~ 170 (650)
T KOG2188|consen 91 NSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSE 170 (650)
T ss_pred hhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccch
Confidence 44899999999999999999999999999999999999999999999999999999999999997633
Q ss_pred --------------hHHHHHHHHhhhhhHH-HHhhcccCChHHHHHHHhCChh----h------HH--------------
Q 003398 591 --------------VDQQTQMVAELDGSVM-KCVHDQNGNHVIQKCIECIPQD----R------IQ-------------- 631 (823)
Q Consensus 591 --------------~eq~~~Ll~EL~~~i~-~LvkDq~GnhVIQk~Le~~~~e----~------~~-------------- 631 (823)
++...-|+.|+.+++. .++.+.+|+||+.++|.+.... . .+
T Consensus 171 dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (650)
T KOG2188|consen 171 DEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMCPIAESEHKLALRKAAHRGMDDWDAVT 250 (650)
T ss_pred hhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCcchhhhHHHHHHHHHhhccccchhhhh
Confidence 1223457788999988 8999999999999988754321 0 00
Q ss_pred -----------HHHHhhhh-----------h-------------------------------------------------
Q 003398 632 -----------FIISSFYG-----------Q------------------------------------------------- 640 (823)
Q Consensus 632 -----------~Ii~~f~g-----------~------------------------------------------------- 640 (823)
.++..+.. .
T Consensus 251 ~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~ 330 (650)
T KOG2188|consen 251 TPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMESPRLVTKFQLFNEKDGL 330 (650)
T ss_pred cChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhhccccCcc
Confidence 00000000 0
Q ss_pred -------hhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCC-chhHHHHHHHhHH
Q 003398 641 -------VVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVITQLAG 712 (823)
Q Consensus 641 -------l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~-~~~r~~Ii~~L~g 712 (823)
+..+-.|+.|+++++.+++.+..+. ...+-..++..+.+|+.++.+||+||++|++.+ .++...|++.|.+
T Consensus 331 ~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~-~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P 409 (650)
T KOG2188|consen 331 WGKERSFLKELLSDQTGSRLLEVIMEVASESL-LSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAP 409 (650)
T ss_pred cccccHHHHHHHhcCcccHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhH
Confidence 1122236778888888888875443 355556677889999999999999999999988 8888899999877
Q ss_pred hHHhhcCCch-----------------------------------------------------------------HHHHH
Q 003398 713 QIVRMSQQKF-----------------------------------------------------------------ASNVV 727 (823)
Q Consensus 713 ~iv~Ls~~K~-----------------------------------------------------------------GS~VV 727 (823)
++-.|..+.+ |+-++
T Consensus 410 ~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~ll 489 (650)
T KOG2188|consen 410 KLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLL 489 (650)
T ss_pred HHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHH
Confidence 7666544322 23333
Q ss_pred HHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhc--CChhHHHHHHHHHHHhHHHHhhCCCchHHH
Q 003398 728 EKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLET--CDDQSLELILSRIRVHLNVLKKYTYGKHIV 805 (823)
Q Consensus 728 EkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~--~ddt~rk~Il~eLk~~L~~La~~~yGk~Vl 805 (823)
|.++.+..+- -+.++..|.... .++|.+++++++|++||+.+|++ .+...+++|+..+.++..+|+.+++|+||+
T Consensus 490 e~lv~f~k~~-i~~litsll~L~--~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~ 566 (650)
T KOG2188|consen 490 EELVNFSKTH-IQTLITSLLSLS--EEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVF 566 (650)
T ss_pred HHHHhhchhh-hHHHHHHHHhhh--HHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHH
Confidence 3333332110 122222222222 37799999999999999999999 467779999999999999999999999998
Q ss_pred HHHHHHHH
Q 003398 806 SRIEKLIA 813 (823)
Q Consensus 806 ~~lek~~~ 813 (823)
+++++..+
T Consensus 567 eK~wea~~ 574 (650)
T KOG2188|consen 567 EKCWEATD 574 (650)
T ss_pred HHHHHHhh
Confidence 88876544
No 13
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.6e-18 Score=194.85 Aligned_cols=245 Identities=18% Similarity=0.297 Sum_probs=198.4
Q ss_pred HHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhh
Q 003398 560 QLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYG 639 (823)
Q Consensus 560 ~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g 639 (823)
+|++.+++++.+|+.-+..+||||+++.++++.+|.+|+.||.+.+.+|+++.||-|.||++|.++.+..+..|+..|+|
T Consensus 157 el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~G 236 (652)
T KOG2050|consen 157 ELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRG 236 (652)
T ss_pred HHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 34455678888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcC
Q 003398 640 QVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQ 719 (823)
Q Consensus 640 ~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~ 719 (823)
++..|..|..|+.||+..+......++++.|+.|+.+....++.+ .--..|..+|+. .++.+..|+..|.+.|-.++.
T Consensus 237 hv~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~-sn~~Tl~kil~~-~pekk~~I~~~l~~~I~~v~e 314 (652)
T KOG2050|consen 237 HVVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKD-SNDKTLDKILAE-APEKKASILRHLKAIITPVAE 314 (652)
T ss_pred hHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhc-cCcccHHHHHHh-ChHhHHHHHHHHHHHhHHHhh
Confidence 888888888888888888876667777888888888888888877 223345555552 456677777777766655543
Q ss_pred C-----chHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHHhHHH
Q 003398 720 Q-----KFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNV 794 (823)
Q Consensus 720 ~-----K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~ 794 (823)
. ..=..++...+..++++++..++..+. +.+..|+..+-|..|...++.....+.|+.|++.|++|+..
T Consensus 315 Kg~v~~tivHk~mlEy~~~ade~e~~e~l~ll~------elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K 388 (652)
T KOG2050|consen 315 KGSVDHTIVHKLMLEYLTIADEEEKSELLELLK------ELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEK 388 (652)
T ss_pred cchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------HHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 2 123456666777899999999998885 67999999999999999999999999999999999999999
Q ss_pred HhhCCCchHHHHHHHHHH
Q 003398 795 LKKYTYGKHIVSRIEKLI 812 (823)
Q Consensus 795 La~~~yGk~Vl~~lek~~ 812 (823)
++++.||..|+-.+..|+
T Consensus 389 ~A~~~yGh~vlia~ldc~ 406 (652)
T KOG2050|consen 389 IANDEYGHLVLIALLDCT 406 (652)
T ss_pred HHhhccCceehhhhhccc
Confidence 999999999987776665
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=175.40 Aligned_cols=287 Identities=18% Similarity=0.289 Sum_probs=228.6
Q ss_pred HHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHH-HHHH
Q 003398 519 AEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQ-QTQM 597 (823)
Q Consensus 519 ~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq-~~~L 597 (823)
..+.+.+.-+..++..+|..|-.|+-|+||+|+++....+..+......++..+..|++|.++.|++++.+..+. .+.+
T Consensus 534 ~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~i 613 (1007)
T KOG4574|consen 534 APEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLI 613 (1007)
T ss_pred chhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhhee
Confidence 456667777778888899999999999999999999999999999999999999999999999999999977664 4556
Q ss_pred HHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCC-HHHHHHHHHH-HH
Q 003398 598 VAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD-ANTQQIIMDE-IM 675 (823)
Q Consensus 598 l~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~-~~~~~~Il~e-Ll 675 (823)
+.-..+....++.|++||||+|.+|...-+. ..||++.+..+++++.+..||++-+.+||+...- .+.....++. +.
T Consensus 614 v~g~dpyc~~l~~dqfgnyvaqd~LkF~fp~-nsFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iI 692 (1007)
T KOG4574|consen 614 VRGVDPYCTPLLNDQFGNYVAQDSLKFGFPW-NSFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCII 692 (1007)
T ss_pred eeccCcchhhHHHHhhcceeeeeehhccCcc-chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhh
Confidence 6778888899999999999999999976654 4788999999999999999999999999986432 2222222222 23
Q ss_pred HHHHHHhcCCCccHHHHHHHhcCC-chhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhCCHH-HHHHHHHHHhcCCCCc
Q 003398 676 QHVCNLAQDQYGNYVIQHVLEHGK-PHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPE-ERQLLINEMLGSTDEN 753 (823)
Q Consensus 676 ~~l~~La~DqyGNyVVQ~lLe~~~-~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k-~Rk~Ii~eLl~~~~~~ 753 (823)
.....++.+.-|-..|.++|+.+. +.....++..+.++++.+|+||.|+-+|.|++.++.+. .|++|++.|+.....+
T Consensus 693 s~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~k 772 (1007)
T KOG4574|consen 693 SKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNFK 772 (1007)
T ss_pred hchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHHhhccccc
Confidence 336778899999999999999876 44445667778899999999999999999999998554 5999999998432211
Q ss_pred ------------------------hhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhhCCCchHHHHHH
Q 003398 754 ------------------------EPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRI 808 (823)
Q Consensus 754 ------------------------e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~~~yGk~Vl~~l 808 (823)
+.+.....|+++.+|.|.|+....... ..+.+|...+.-++..++|++-+..+
T Consensus 773 d~~lt~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~il~~~a~~n--arv~~LleevgliSasksgs~s~q~~ 849 (1007)
T KOG4574|consen 773 DSALTEVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVILNSPAVSN--ARVQRLLEEVGLISASKSGSQSIQMH 849 (1007)
T ss_pred cchhhhhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHHHhcCCccH--HHHHHHHHHHhhhccccchhHHHHhh
Confidence 224555688999999999988764332 12266666777788889998875443
No 15
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=135.95 Aligned_cols=213 Identities=16% Similarity=0.232 Sum_probs=137.2
Q ss_pred HHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcC-CHHHHHHHHHHHhhhHHHhhhc
Q 003398 497 VVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHG-TESQRAQLASQLTGHVLRLSLQ 575 (823)
Q Consensus 497 iveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~-s~eqr~~Li~~L~g~~~~Ls~h 575 (823)
..++..|-.|--|+|++++++++-.++.........+...-.|+||.+..||+|+++ .+.+.+.++.-+......+..+
T Consensus 548 ~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~dpyc~~l~~d 627 (1007)
T KOG4574|consen 548 LPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVDPYCTPLLND 627 (1007)
T ss_pred CCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccCcchhhHHHH
Confidence 355667777888999999999998888888888888888888999999999999887 4557777777788888888888
Q ss_pred cccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCC--hhhHHHHHHhhh-hhhhHhhcCcCcch
Q 003398 576 MYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIP--QDRIQFIISSFY-GQVVALSTHPYGCR 652 (823)
Q Consensus 576 ~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~--~e~~~~Ii~~f~-g~l~~Ls~hk~Gs~ 652 (823)
.||.+|+|..|...-+.. .-++++++.++..++...+|..-+.+|++... .+...+.++.+. ...-.++++..|-.
T Consensus 628 qfgnyvaqd~LkF~fp~n-sFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iIs~ss~latnsng~l 706 (1007)
T KOG4574|consen 628 QFGNYVAQDSLKFGFPWN-SFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCIISKSSYLATNSNGLL 706 (1007)
T ss_pred hhcceeeeeehhccCccc-hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhhhchhhhhhcCccce
Confidence 888888888887654321 12357777788888888888888888888542 222222222211 11233444455555
Q ss_pred hHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchh-HHHHHHHh
Q 003398 653 VIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHE-RTTVITQL 710 (823)
Q Consensus 653 VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~-r~~Ii~~L 710 (823)
.|..+|+.+.-+.+-..++..+.+++.++|.|.-|+-+|+++++...+.. |++|++.|
T Consensus 707 lvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~ekii~hl 765 (1007)
T KOG4574|consen 707 LVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSREKIIEHL 765 (1007)
T ss_pred eeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHHHHHHHHH
Confidence 55555554433332222333333455555555555555555555544222 44444444
No 16
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.98 E-value=3.2e-06 Score=62.86 Aligned_cols=33 Identities=39% Similarity=0.614 Sum_probs=21.7
Q ss_pred HhHhHHHhhccccccchhhHhhhcCCHHHHHHH
Q 003398 529 IIPHARTLMTDVFGNYVIQKFFEHGTESQRAQL 561 (823)
Q Consensus 529 L~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~L 561 (823)
|.+++.+|++|+||||||||+|++++++++..|
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~i 34 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLI 34 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhh
Confidence 556666666666666666666666666665554
No 17
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.61 E-value=2.7e-05 Score=57.16 Aligned_cols=30 Identities=50% Similarity=0.716 Sum_probs=14.0
Q ss_pred HhHHHhhccccccchhhHhhhcCCHHHHHH
Q 003398 531 PHARTLMTDVFGNYVIQKFFEHGTESQRAQ 560 (823)
Q Consensus 531 ~~~~~L~tD~~GshVIQKLLe~~s~eqr~~ 560 (823)
+++.+||+|+|||||||++|++++++++..
T Consensus 4 ~~~~~l~~~~~g~~viqk~l~~~~~~~~~~ 33 (36)
T smart00025 4 GHLLELSKDQYGNRVVQKLLEHASESQREQ 33 (36)
T ss_pred HHHHHHHhcchhhHHHHHHHHHCCHHHHHH
Confidence 444444444444444444444444444433
No 18
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.57 E-value=4.2e-05 Score=56.85 Aligned_cols=35 Identities=40% Similarity=0.645 Sum_probs=32.0
Q ss_pred hhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHH
Q 003398 492 DIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIF 526 (823)
Q Consensus 492 eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If 526 (823)
++.++++++++|++||+|||++|+.++++++..|+
T Consensus 1 ~i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 1 EIKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp CHTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred ChHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 46788999999999999999999999999998875
No 19
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.44 E-value=0.00012 Score=53.68 Aligned_cols=34 Identities=41% Similarity=0.729 Sum_probs=31.7
Q ss_pred hHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHH
Q 003398 493 IVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIF 526 (823)
Q Consensus 493 I~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If 526 (823)
+.+++.+++.|++||+|||++|+.++.+++..|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 5689999999999999999999999999998876
No 20
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=89.96 E-value=38 Score=38.13 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=47.1
Q ss_pred CccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhC-----CHHHHHHHHHHHhcCCCCchhHHHhh
Q 003398 686 YGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG-----SPEERQLLINEMLGSTDENEPLQAMM 760 (823)
Q Consensus 686 yGNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a-----~~k~Rk~Ii~eLl~~~~~~e~L~~La 760 (823)
-|...+-.+|..-.....+.|++.|...=.. .+-.|-++++.|. +++....|+++
T Consensus 202 ~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~-----~a~~Ir~~mF~Fedl~~l~~~~l~~ll~~--------------- 261 (339)
T PRK05686 202 GGVKTVAEILNNLDRQTEKTILESLEEEDPE-----LAEKIKDLMFVFEDLVDLDDRSIQRLLRE--------------- 261 (339)
T ss_pred CcHHHHHHHHhcCCchHHHHHHHHHHhhCHH-----HHHHHHHHhcCHHHHhcCCHHHHHHHHHh---------------
Confidence 4556677778777777777777777653333 3345555555543 22223333333
Q ss_pred cCcchHHHHHHHHhcCChhHHHHHHHHHHHhH
Q 003398 761 KDPFGNYVVQKVLETCDDQSLELILSRIRVHL 792 (823)
Q Consensus 761 ~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L 792 (823)
..+-+|-.+|.-+++..++.|++.|..-.
T Consensus 262 ---v~~~~L~~ALkga~~~~~~~il~nmS~R~ 290 (339)
T PRK05686 262 ---VDNDVLALALKGASEELREKFLSNMSKRA 290 (339)
T ss_pred ---CCHHHHHHHHCCCCHHHHHHHHHhcCHHH
Confidence 33455556666666666666666554333
No 21
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=88.04 E-value=52 Score=37.16 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=58.6
Q ss_pred ccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhC-----CHHHHHHHHHHHhcCCCCchhHHHhhc
Q 003398 687 GNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG-----SPEERQLLINEMLGSTDENEPLQAMMK 761 (823)
Q Consensus 687 GNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a-----~~k~Rk~Ii~eLl~~~~~~e~L~~La~ 761 (823)
|.-.+..+|..-.....+.|++.|...=.. .+-.|-++++.|. +++....|++++
T Consensus 200 G~~~~a~ILN~~~~~~~~~il~~L~~~dp~-----la~~Ir~~mF~Fedl~~ld~~~l~~llrev--------------- 259 (338)
T TIGR00207 200 GVRAVAEIINLMDRKTEKTIITSLEEFDPE-----LAEEIKKEMFVFEDIVDLDDRSIQRVLREV--------------- 259 (338)
T ss_pred hHHHHHHHHHhCCchHHHHHHHHHHHhCHH-----HHHHHHHHccCHHHHhcCCHHHHHHHHHhC---------------
Confidence 556677788877777777777777653333 2345555555543 222233333333
Q ss_pred CcchHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhhCC---Cc-----------hHHHHHHHHHHHcCC
Q 003398 762 DPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYT---YG-----------KHIVSRIEKLIATGG 816 (823)
Q Consensus 762 D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~~~---yG-----------k~Vl~~lek~~~~g~ 816 (823)
-+-+|-.+|..+++..++.|++.|..-..+..... -| +.|+..+.++...|+
T Consensus 260 ---~~~~L~~ALkga~~e~~~~il~nmS~R~a~~l~ee~~~~GpV~~sdvE~Aq~~Iv~~~r~L~~~G~ 325 (338)
T TIGR00207 260 ---DSEDLLLALKGAEQPLREKFLNNMSQRAAEILKEDMEFLGPVRLKDVEEAQKKIVSIVRKLEETGE 325 (338)
T ss_pred ---CHHHHHHHHCcCCHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34555566666666666666666654443332221 22 356666666665554
No 22
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=83.87 E-value=4.7 Score=40.13 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=9.6
Q ss_pred HHhhcCcchHHHHHHHHhcC
Q 003398 757 QAMMKDPFGNYVVQKVLETC 776 (823)
Q Consensus 757 ~~La~D~~GnyVIqklL~~~ 776 (823)
.+|+.+.+|..||..+|..+
T Consensus 67 ~~ll~~~~g~~~i~eiL~~~ 86 (148)
T PF08144_consen 67 EELLSSSFGCQFITEILLSA 86 (148)
T ss_pred HHHHhcCcccHHHHHHHhcc
Confidence 34444445554444444444
No 23
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=82.18 E-value=85 Score=34.78 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=21.8
Q ss_pred chhHHHHHHHhHHhHHhhcCC--chHHHHHHHHHhhCCHHHHHHHHHHHh
Q 003398 700 PHERTTVITQLAGQIVRMSQQ--KFASNVVEKCLTFGSPEERQLLINEML 747 (823)
Q Consensus 700 ~~~r~~Ii~~L~g~iv~Ls~~--K~GS~VVEkcL~~a~~k~Rk~Ii~eLl 747 (823)
+..++.+.+.+...+..+... -.-..+|+.-+..-+.++-..++...+
T Consensus 289 ~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l~~~~~~~l~~~i~~~v 338 (367)
T PF04286_consen 289 PELREKINRFIENLLERIVESNHIDIGEIVEEKLNSLDDEELEELIESKV 338 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555555555555443 222333333333334444444444444
No 24
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=81.24 E-value=4.1 Score=40.54 Aligned_cols=72 Identities=10% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHHHhHHhHHhhcCCchHHHHHHHHHhhCCHHH---HHHHHHHHhcC--CCCchhHHHhhcCcchHHHHHHHHhcCC
Q 003398 706 VITQLAGQIVRMSQQKFASNVVEKCLTFGSPEE---RQLLINEMLGS--TDENEPLQAMMKDPFGNYVVQKVLETCD 777 (823)
Q Consensus 706 Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~---Rk~Ii~eLl~~--~~~~e~L~~La~D~~GnyVIqklL~~~d 777 (823)
|++.+..+...|..+++|+.+|-.+|..+..+. .+.|++.+... ..+.+.-..++.+++|++++.+++..-.
T Consensus 58 Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq~~~ 134 (148)
T PF08144_consen 58 LLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQGDK 134 (148)
T ss_pred HHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHHCCC
Confidence 334444455566666666666666666643211 12233333221 0111112367799999999999996653
No 25
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=77.95 E-value=1.3e+02 Score=33.99 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=51.4
Q ss_pred CcCHHHHHHhhh-CCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHH
Q 003398 505 YGSRFIQQKLEA-ATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQ 583 (823)
Q Consensus 505 ~GSRvLQ~lLe~-~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQ 583 (823)
.|-..+..+|.. -..+.-..|++++.+.-. ..+++.+ ...+++....++.....+...++...--..+-.
T Consensus 80 gg~~~~~~iL~~~l~~~~a~~il~~i~~~~~--------~~~fe~L-~~ld~~~l~~lL~~EhpqtiA~iLs~l~~~~aa 150 (339)
T PRK05686 80 GGIDYARSLLEKALGEEKADSILERILESLG--------TSGFDFL-RKMDPQQLANFIRNEHPQTIALILSYLKPDQAA 150 (339)
T ss_pred ChHHHHHHHHHHHcCHHHHHHHHHHHhcccc--------CchHHHH-hcCCHHHHHHHHHhcCHHHHHHHHhCCCHHHHH
Confidence 344567777764 556666677777654211 2456533 345677777777777777666666555555556
Q ss_pred HhhhhcChHHHHHHHHh
Q 003398 584 KALEVVHVDQQTQMVAE 600 (823)
Q Consensus 584 klLe~~~~eq~~~Ll~E 600 (823)
+++..++.+.+..++..
T Consensus 151 ~vL~~l~~~~~~~v~~r 167 (339)
T PRK05686 151 EILSLLPEELRADVMMR 167 (339)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 66666665555554443
No 26
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=76.25 E-value=1.5e+02 Score=33.87 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=13.9
Q ss_pred HHHHHHHhhCCHHHHHHH
Q 003398 725 NVVEKCLTFGSPEERQLL 742 (823)
Q Consensus 725 ~VVEkcL~~a~~k~Rk~I 742 (823)
.|.|+|+...++..|..-
T Consensus 277 ~v~e~cFn~~d~~~k~~A 294 (372)
T PF12231_consen 277 KVPEKCFNSSDPQVKIQA 294 (372)
T ss_pred HHHHHHhcCCCHHHHHHH
Confidence 688999999888776543
No 27
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=70.18 E-value=6.3 Score=49.39 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=63.0
Q ss_pred HHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhH-----------------HHhh----ccccccchhhHhhhcCC
Q 003398 496 HVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHA-----------------RTLM----TDVFGNYVIQKFFEHGT 554 (823)
Q Consensus 496 kiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~-----------------~~L~----tD~~GshVIQKLLe~~s 554 (823)
.++.+..=..|-++|-++|.+-+.+++..|+.-|..++ ..++ .|-|-..|+..|+.+..
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 45566666678888999999999999999999988888 3333 34566666666666655
Q ss_pred HHHHHHHHHHH-----hhhHHHhhhccccchHHHHhhhhc
Q 003398 555 ESQRAQLASQL-----TGHVLRLSLQMYGCRVIQKALEVV 589 (823)
Q Consensus 555 ~eqr~~Li~~L-----~g~~~~Ls~h~yGSrVVQklLe~~ 589 (823)
+.....|+..+ ..++..++++++|.-+|-.+|..+
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsRa 695 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSRA 695 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHHH
Confidence 55444444332 256777888999988888888543
No 28
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=69.32 E-value=2e+02 Score=32.45 Aligned_cols=171 Identities=14% Similarity=0.171 Sum_probs=82.0
Q ss_pred hhhcCCHHHHHHHHHHHhhhHHHhhhcccc-chHHHHhhhh-cChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCC
Q 003398 549 FFEHGTESQRAQLASQLTGHVLRLSLQMYG-CRVIQKALEV-VHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIP 626 (823)
Q Consensus 549 LLe~~s~eqr~~Li~~L~g~~~~Ls~h~yG-SrVVQklLe~-~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~ 626 (823)
-+...++++...++++|...+..-..-..| -..++++++. +.++.-..+++++.+.. ....+++ .|+..+
T Consensus 48 ~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg~~~a~~il~~i~~~~-------~~~~~~~-~L~~~~ 119 (338)
T TIGR00207 48 NVTQIDNQQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALGEEKAASILNDLTSSL-------QTAPGFE-FLRKAE 119 (338)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcCHHHHHHHHHHHhccc-------ccCchhH-HHHCCC
Confidence 445667888888888877777655433333 3445666643 55555566666654421 1111232 222333
Q ss_pred hhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcC--CchhHH
Q 003398 627 QDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHG--KPHERT 704 (823)
Q Consensus 627 ~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~--~~~~r~ 704 (823)
++....++..=..+...+ +|.+. +++.-..++..+-+.. -.-|+..+.... ++....
T Consensus 120 ~~~la~~l~~EhPQ~iAl------------iLs~L-~p~~AA~VL~~Lp~~~--------~~ei~~ria~l~~vs~~~i~ 178 (338)
T TIGR00207 120 PQQIADFIQQEHPQTIAL------------ILSHL-DPAQAADILSLFPEEV--------QAEVARRIATMGRTSPEVVA 178 (338)
T ss_pred HHHHHHHHHccCHHHHHH------------HHHcC-CHHHHHHHHHhCCHHH--------HHHHHHHHHhcCCCCHHHHH
Confidence 433333322211111111 12221 1222222222211110 111333333332 344444
Q ss_pred HHHHHhHHhHHhhc---CCchHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 003398 705 TVITQLAGQIVRMS---QQKFASNVVEKCLTFGSPEERQLLINEMLG 748 (823)
Q Consensus 705 ~Ii~~L~g~iv~Ls---~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~ 748 (823)
.|-+.|...+..+. ...-|...+-.+|..-+....+.|+..|-.
T Consensus 179 ~ie~~L~~~~~~~~~~~~~~gG~~~~a~ILN~~~~~~~~~il~~L~~ 225 (338)
T TIGR00207 179 EVERVLEGKLDSLNSDYTKMGGVRAVAEIINLMDRKTEKTIITSLEE 225 (338)
T ss_pred HHHHHHHHHHHhhccccccCChHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444443 233588888899998888888888888854
No 29
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=56.54 E-value=1.6e+02 Score=32.55 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=6.4
Q ss_pred HhcCCchhHHHHHHHh
Q 003398 695 LEHGKPHERTTVITQL 710 (823)
Q Consensus 695 Le~~~~~~r~~Ii~~L 710 (823)
++.-+.++...++...
T Consensus 322 l~~~~~~~l~~~i~~~ 337 (367)
T PF04286_consen 322 LNSLDDEELEELIESK 337 (367)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 3333444444444333
No 30
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.32 E-value=2.2e+02 Score=36.45 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=89.6
Q ss_pred HHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhh--HHHhhhccccc-hHHHHhhhhcChHH--HHHHHHhhhhhHHH
Q 003398 533 ARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGH--VLRLSLQMYGC-RVIQKALEVVHVDQ--QTQMVAELDGSVMK 607 (823)
Q Consensus 533 ~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~--~~~Ls~h~yGS-rVVQklLe~~~~eq--~~~Ll~EL~~~i~~ 607 (823)
+...++.+-|..+++|++.++. .|+....+. -.+-.+.++|| |+|-.+.+.+..+. +.+|-.-|..|++.
T Consensus 395 ~l~~~~~KR~ke~l~k~l~F~~-----~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 395 FLTTLVSKRGKETLPKILSFIV-----DILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHhcchhhhhhHHHHHH-----HHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 4556666667777777665431 122211111 11223444554 33333444433222 23344446678888
Q ss_pred HhhcccCChHHHHHHHhC--------ChhhHHHHHHhhhhhhh---HhhcCcCcchhHHHHHhhCCCH-HHHHHHHHHHH
Q 003398 608 CVHDQNGNHVIQKCIECI--------PQDRIQFIISSFYGQVV---ALSTHPYGCRVIQRVLEHCDDA-NTQQIIMDEIM 675 (823)
Q Consensus 608 LvkDq~GnhVIQk~Le~~--------~~e~~~~Ii~~f~g~l~---~Ls~hk~Gs~VVQklLe~~~~~-~~~~~Il~eLl 675 (823)
.+++++|-..-+.|--+. ++.....+++.....+. +|...--+...+|.++.++... +.....+-.++
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 899999887777664422 22222233333322222 1222223556788888887543 33444555666
Q ss_pred HHHHHHhcCC---CccHHHHHHHhcCCc---hhHHHHHHHhHHhHHhhcC
Q 003398 676 QHVCNLAQDQ---YGNYVIQHVLEHGKP---HERTTVITQLAGQIVRMSQ 719 (823)
Q Consensus 676 ~~l~~La~Dq---yGNyVVQ~lLe~~~~---~~r~~Ii~~L~g~iv~Ls~ 719 (823)
+.+..|++.- -=..|+|+++..-.+ ..-.+++..|...+.++.+
T Consensus 550 q~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 550 QELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 6666666432 123456666643321 1233555556665555554
No 31
>COG1536 FliG Flagellar motor switch protein [Cell motility and secretion]
Probab=56.24 E-value=3.5e+02 Score=30.75 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=24.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhhC
Q 003398 765 GNYVVQKVLETCDDQSLELILSRIRVHLNVLKKY 798 (823)
Q Consensus 765 GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~~ 798 (823)
.+.+|..+|.-+++..|++|++.+.....++...
T Consensus 263 ~~~~La~aLkg~~~~lrekilsnmskR~~e~i~~ 296 (339)
T COG1536 263 DKEDLAIALKGASEELREKILSNMSKRAAEMLKE 296 (339)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHhccHHHHHHHHH
Confidence 6677777777777888888887776665555443
No 32
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=55.51 E-value=2.3e+02 Score=34.37 Aligned_cols=172 Identities=13% Similarity=0.139 Sum_probs=72.3
Q ss_pred ccccccHhhhHHHHHHHhhC--CCcCHHH---HHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhh-hcCCHHH
Q 003398 484 KTRSFELSDIVDHVVEFSTD--QYGSRFI---QQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFF-EHGTESQ 557 (823)
Q Consensus 484 e~k~~~L~eI~GkiveLA~D--q~GSRvL---Q~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLL-e~~s~eq 557 (823)
+...+.+..|++ +..+|+| .+-+|+. =++|......++..|=..|...+..=.....+...-|-.- ..+++..
T Consensus 71 ed~~iR~~aik~-lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~ 149 (556)
T PF05918_consen 71 EDVQIRKQAIKG-LPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQV 149 (556)
T ss_dssp SSHHHHHHHHHH-GGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHH
T ss_pred ccHHHHHHHHHh-HHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHH
Confidence 333333444444 6677776 3556654 4466666666776666666544332222222222222110 2345556
Q ss_pred HHHHHHHHhhhHHHhhhcccc---------chHHHHhhhhcChHHHHHHHHhhhh--------------hHHHHhhcccC
Q 003398 558 RAQLASQLTGHVLRLSLQMYG---------CRVIQKALEVVHVDQQTQMVAELDG--------------SVMKCVHDQNG 614 (823)
Q Consensus 558 r~~Li~~L~g~~~~Ls~h~yG---------SrVVQklLe~~~~eq~~~Ll~EL~~--------------~i~~LvkDq~G 614 (823)
|..+++.|..++..|.....- ..+|.++|+-++.++...+++-|.. .+.+++.++-
T Consensus 150 Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa- 228 (556)
T PF05918_consen 150 RERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQA- 228 (556)
T ss_dssp HHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHh-
Confidence 888888887777765433322 2334455555555555444332211 0011111100
Q ss_pred ChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHh
Q 003398 615 NHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLE 659 (823)
Q Consensus 615 nhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe 659 (823)
-+...+...+++.+..++.++...+.-.+....++..+.-+.+
T Consensus 229 --~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~ 271 (556)
T PF05918_consen 229 --DLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCE 271 (556)
T ss_dssp --TTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH
T ss_pred --ccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH
Confidence 0000122334566667777666655555555556555554444
No 33
>PTZ00429 beta-adaptin; Provisional
Probab=44.06 E-value=7.7e+02 Score=31.14 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=13.5
Q ss_pred HHHhhcCcchHHHHHHHHhcC
Q 003398 756 LQAMMKDPFGNYVVQKVLETC 776 (823)
Q Consensus 756 L~~La~D~~GnyVIqklL~~~ 776 (823)
|..|+.+.....|+..+...+
T Consensus 357 L~~Lane~Nv~~IL~EL~eYa 377 (746)
T PTZ00429 357 LLKLVTPSVAPEILKELAEYA 377 (746)
T ss_pred HHHHcCcccHHHHHHHHHHHh
Confidence 456666666667776666654
No 34
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.50 E-value=8.9e+02 Score=31.73 Aligned_cols=129 Identities=10% Similarity=0.102 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccHHHHHH-Hhc-------CCc----hhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhh--
Q 003398 668 QIIMDEIMQHVCNLAQDQYGNYVIQHV-LEH-------GKP----HERTTVITQLAGQIVRMSQQKFASNVVEKCLTF-- 733 (823)
Q Consensus 668 ~~Il~eLl~~l~~La~DqyGNyVVQ~l-Le~-------~~~----~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~-- 733 (823)
...+++|+..+....+|+. .+|++. +.. -.| +..+.++..|...+..-...+...|...+++.+
T Consensus 384 ~~~l~~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E 461 (1075)
T KOG2171|consen 384 IGNLPKILPIVLNGLNDPH--PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE 461 (1075)
T ss_pred HHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH
Confidence 3356666666666777762 344431 111 011 233344444444444444455566666666643
Q ss_pred -CCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHH--hHHHHhhCCCchHHHHHHHH
Q 003398 734 -GSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRV--HLNVLKKYTYGKHIVSRIEK 810 (823)
Q Consensus 734 -a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~--~L~~La~~~yGk~Vl~~lek 810 (823)
++...-...+..|+. ..++.+++......++.++..|-. ....-+.-+|-.+++..+.+
T Consensus 462 ~~~~~~l~pYLd~lm~------------------~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~ 523 (1075)
T KOG2171|consen 462 ECDKSILEPYLDGLME------------------KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN 523 (1075)
T ss_pred hCcHHHHHHHHHHHHH------------------HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 444444444444431 144445555555555665555532 22333445566666666666
Q ss_pred HHHcCC
Q 003398 811 LIATGG 816 (823)
Q Consensus 811 ~~~~g~ 816 (823)
++...+
T Consensus 524 ~L~n~~ 529 (1075)
T KOG2171|consen 524 FLQNAD 529 (1075)
T ss_pred HHhCCC
Confidence 665544
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=43.40 E-value=6.1e+02 Score=33.30 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=9.7
Q ss_pred HHHHhhhCCHHHHHHHHHHHh
Q 003398 510 IQQKLEAATAEEKTRIFPEII 530 (823)
Q Consensus 510 LQ~lLe~~s~Eqr~~If~EL~ 530 (823)
|..+.+.+..+.-..+|+++.
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~ 464 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQ 464 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHH
Confidence 334444444444445555443
No 36
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=41.98 E-value=1e+02 Score=32.93 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=51.4
Q ss_pred hHHhHHhhcCCchHHHHHHHHH------hhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHH
Q 003398 710 LAGQIVRMSQQKFASNVVEKCL------TFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLEL 783 (823)
Q Consensus 710 L~g~iv~Ls~~K~GS~VVEkcL------~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~ 783 (823)
.-.-+..|+.++.|-.++|++= .....+.|..+++-++.. +....|.+.+.|+.++|....+..|..
T Consensus 143 Yf~~IG~lS~~~~Gl~lLe~~~if~~l~~i~~~~~~~~l~klil~~-------LDY~~~~~~R~iLsKaLt~~s~~iRl~ 215 (226)
T PF14666_consen 143 YFLFIGVLSSTPNGLKLLERWNIFTMLYHIFSLSSRDDLLKLILSS-------LDYSVDGHPRIILSKALTSGSESIRLY 215 (226)
T ss_pred HHHHHHHHhCChhHHHHHHHCCHHHHHHHHHccCchHHHHHHHHhh-------CCCCCccHHHHHHHHHHhcCCHHHHHH
Confidence 3345677899999998888632 222333456666666543 245568888999999999999988877
Q ss_pred HHHHHHHh
Q 003398 784 ILSRIRVH 791 (823)
Q Consensus 784 Il~eLk~~ 791 (823)
..+.|+..
T Consensus 216 aT~~L~~l 223 (226)
T PF14666_consen 216 ATKHLRVL 223 (226)
T ss_pred HHHHHHHH
Confidence 66666543
No 37
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=41.25 E-value=2.3e+02 Score=32.37 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhC
Q 003398 689 YVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG 734 (823)
Q Consensus 689 yVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a 734 (823)
.++..++...+ ..|..++..+.+--..+..++.-++.+..++...
T Consensus 179 ~l~~~l~~~~k-~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~ 223 (372)
T PF12231_consen 179 ILFPDLLSSAK-DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRS 223 (372)
T ss_pred HHHHHHhhcch-HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccc
Confidence 55556665433 3344444444444444555666666666666654
No 38
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=40.85 E-value=51 Score=41.48 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHHHHhH------------hHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHh
Q 003398 521 EKTRIFPEIIP------------HARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRL 572 (823)
Q Consensus 521 qr~~If~EL~~------------~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~L 572 (823)
...++|++|+- .|+.++.-+-|..+|-++|.+.+.+++..|+..|.-++..|
T Consensus 553 ~~~~l~~~L~~~~~~~~~~~~~~~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l 616 (808)
T PF09770_consen 553 LVEKLWESLKVMEPIGDSSSEPHPFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQL 616 (808)
T ss_dssp HHHHHHHHHHT--TTSSS---THHHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH---
T ss_pred HHHHHHHhcCCCCCCCCCCCCCCcceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhh
Confidence 34456666653 57889999999999999999999999999999998888544
No 39
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=40.78 E-value=6.7e+02 Score=33.71 Aligned_cols=257 Identities=15% Similarity=0.119 Sum_probs=127.4
Q ss_pred hhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHH--HHHHHhhhhh--HHHH--hhcccCChHHHHHH
Q 003398 549 FFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQ--TQMVAELDGS--VMKC--VHDQNGNHVIQKCI 622 (823)
Q Consensus 549 LLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~--~~Ll~EL~~~--i~~L--vkDq~GnhVIQk~L 622 (823)
++...++|++...++.+...+...+..+...++++.+...+..... ..+++++... .... ......=.+|++||
T Consensus 53 ~~~~~~~Ee~~~~ik~~l~~i~~~~~~~~~~~l~d~L~~~v~~~~i~ar~vCe~lL~~~~l~~~~~~~W~~~F~lIrkiI 132 (1341)
T PF11573_consen 53 MMSSMSEEEKESCIKQYLKYIHSQSHPRRYEFLFDLLETAVNNGIIPARLVCEELLSSEKLFYLNSRFWQEKFKLIRKII 132 (1341)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCCCChHHHHHHHhcccchhhhhhHHHHHHHHHHHHHh
Confidence 4445678888888888887777777777777777766655442211 1222332110 0111 12233345788888
Q ss_pred HhCChhhHHHHHHhhhhhhhHhhcC---------cCcchhHHHHHhhCCC--H--------------------HHHHHHH
Q 003398 623 ECIPQDRIQFIISSFYGQVVALSTH---------PYGCRVIQRVLEHCDD--A--------------------NTQQIIM 671 (823)
Q Consensus 623 e~~~~e~~~~Ii~~f~g~l~~Ls~h---------k~Gs~VVQklLe~~~~--~--------------------~~~~~Il 671 (823)
...+-+-.+.|++.+..++..+-.. ...+.||+.+++.-.. | -.....+
T Consensus 133 ~~VDYKGvR~Ilk~~~eK~~~iP~~~~~~~~~~l~~~~~vi~~ilDR~~~LlP~y~~~nEi~r~~~~~~~~~~w~L~~~~ 212 (1341)
T PF11573_consen 133 HGVDYKGVREILKICLEKMQQIPSSLSPEQLPQLLAVEEVIEHILDRNACLLPAYFAVNEIRRGYPKQAAMPPWRLAEKL 212 (1341)
T ss_pred cccCcHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHhhCccccccCcHHHHHHH
Confidence 8888887777777766554433211 1245666666653110 1 1122233
Q ss_pred HHHHHHHHHHh------cCCCccHHHHH-----------HHhcC--------C--chhHHHHHHHhHHhHHhhcCCchHH
Q 003398 672 DEIMQHVCNLA------QDQYGNYVIQH-----------VLEHG--------K--PHERTTVITQLAGQIVRMSQQKFAS 724 (823)
Q Consensus 672 ~eLl~~l~~La------~DqyGNyVVQ~-----------lLe~~--------~--~~~r~~Ii~~L~g~iv~Ls~~K~GS 724 (823)
.++.+++..+| -.++=-.|+.+ -|+.. . --.+.++.+.-..-+..+..+.+|-
T Consensus 213 s~~~~~Fr~~A~mvs~~gr~~l~Piv~h~~~~~~~~~~wkl~~~~~~~~~k~~~~LPY~~el~~~q~~lL~~vL~Qp~sr 292 (1341)
T PF11573_consen 213 SNFIDSFRPLAQMVSIIGRPSLLPIVGHSSYAPQLSNWWKLDPNTLKFSLKGHHTLPYRPELLEPQTRLLYYVLRQPYSR 292 (1341)
T ss_pred HHHHHhhhhHHHHHhhhcccceecccCCCCccccCCchhhcCccceeeeccccCCCCCChHHcchHHHHHHHHHcCcchH
Confidence 34444433332 11111111111 01100 0 0123445555555667777889999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhcC-----------CCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHHhHH
Q 003398 725 NVVEKCLTFGSPEERQLLINEMLGS-----------TDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLN 793 (823)
Q Consensus 725 ~VVEkcL~~a~~k~Rk~Ii~eLl~~-----------~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~ 793 (823)
..|..++.....+.|+...++++.. .++++......=+-..+.||.-++..+- .-..+++.|++.+.
T Consensus 293 d~v~~~l~~~~~k~~~~~~ee~l~~li~~aM~~~e~~~~~~~~~~~~W~hls~~viy~~l~~~i--~F~~~v~~L~~kL~ 370 (1341)
T PF11573_consen 293 DMVCSMLGLQQQKQRCPALEELLVDLIIEAMEESESEDENEPINRWQWLHLSSQVIYFMLFQFI--SFPDFVKKLHEKLT 370 (1341)
T ss_pred HHHHHHhcccccCccchHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 9999998877556665555555421 0011111111111112233333333221 13457777777766
Q ss_pred HHhhCCCchHHHHHH
Q 003398 794 VLKKYTYGKHIVSRI 808 (823)
Q Consensus 794 ~La~~~yGk~Vl~~l 808 (823)
. ..++.||.=|-|+
T Consensus 371 ~-~~~~r~Rd~vMWv 384 (1341)
T PF11573_consen 371 G-RNYRRGRDHVMWV 384 (1341)
T ss_pred c-CceeeccchhHHH
Confidence 6 5567777555444
No 40
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=39.95 E-value=3.3e+02 Score=31.02 Aligned_cols=198 Identities=10% Similarity=0.144 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHH-HHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHH
Q 003398 554 TESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQT-QMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQF 632 (823)
Q Consensus 554 s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~-~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~ 632 (823)
+.+.+..++......-..+....|=-++.+.+-.-...+.-. -=++-|-+-+.++-.+.++ -.|.+.|...+.+....
T Consensus 124 P~~~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg~~~~~~WQ~lGLQGIAD~~aRl~~~~~~-~~l~~al~~lP~~vl~a 202 (340)
T PF12069_consen 124 PSQEKLAMFHAQVRAQLGQPASQYYEHAQAYLSGQLGWDNWQTLGLQGIADICARLDQEDNA-QLLRKALPHLPPEVLYA 202 (340)
T ss_pred CChHHHHHHHHHHHHHcCCCcchhHHHHHHHHcCCcchhHHHHhhhhHHHHHHHHhcccchH-HHHHHHHhhCChHHHHH
Confidence 444555555555444444444444444443322222111111 1123333444444444443 34455666666666555
Q ss_pred HHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCC---CccHHHHHHHhcCCchhHHHHHHH
Q 003398 633 IISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQ---YGNYVIQHVLEHGKPHERTTVITQ 709 (823)
Q Consensus 633 Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~Dq---yGNyVVQ~lLe~~~~~~r~~Ii~~ 709 (823)
++.++.. ......+.+++++...... .. ..+...+..|+... -....|..+|+..... ..+++-.
T Consensus 203 L~~~LEh-------~~l~~~l~~~l~~~~~~~~-d~---~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~-~~e~Li~ 270 (340)
T PF12069_consen 203 LCGCLEH-------QPLPDKLAEALLERLEQAP-DL---ELLSALLRALSSAPASDLVAILIDALLQSPRLC-HPEVLIA 270 (340)
T ss_pred HHHHhcC-------CCCCHHHHHHHHHHHHcCC-CH---HHHHHHHHHHcCCCchhHHHHHHHHHhcCcccC-ChHHHHH
Confidence 5443321 1222233333333321110 00 01111233333222 1222344455433211 2335555
Q ss_pred hHHhHHhhc-CCchHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcc
Q 003398 710 LAGQIVRMS-QQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPF 764 (823)
Q Consensus 710 L~g~iv~Ls-~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~ 764 (823)
|.+..+... ...--...+|++-...+......|+..|+-...-+..++.++.|+.
T Consensus 271 IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfaDLv~iP~lR~~~L~~LR~~~ 326 (340)
T PF12069_consen 271 IAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFADLVMIPELRPPVLMLLRHPN 326 (340)
T ss_pred HHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHHHHHhchhhhHHHHHHhccCC
Confidence 555433333 3344455555555544444455555555544333344444444443
No 41
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=39.13 E-value=4.5e+02 Score=28.83 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=25.9
Q ss_pred chhHHHHH-hhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCC---chhHHHHHHHhHHhHHhhcCC
Q 003398 651 CRVIQRVL-EHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK---PHERTTVITQLAGQIVRMSQQ 720 (823)
Q Consensus 651 s~VVQklL-e~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~---~~~r~~Ii~~L~g~iv~Ls~~ 720 (823)
+-+|-+++ +.|-+++.+..++..++ .+.-+..---|+|.+|+... ++....+++.|.++-..++.+
T Consensus 145 ~eLl~rlvk~~~l~p~~~~l~l~~~L----~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~skS 214 (263)
T PF11510_consen 145 CELLCRLVKKECLEPDHRLLLLRQIL----ELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQFSKS 214 (263)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHH----HS---HHHHHHHHHHHTT-----HHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH----hCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhcc
Confidence 34555666 44555555554444433 22222223358888888654 233334455555444444433
No 42
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=38.17 E-value=2.8e+02 Score=32.50 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=21.8
Q ss_pred HHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHH
Q 003398 510 IQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQL 565 (823)
Q Consensus 510 LQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L 565 (823)
++.+|+...+.+...+++++.+...............-.+|++.+++.+..+++.+
T Consensus 23 l~~~l~~~~~~dia~~l~~l~~~~~~~~~~~l~~~~~a~vl~~l~~~~~~~ll~~l 78 (449)
T TIGR00400 23 IKEKFLKXQPXDIAEALKRLPGTELILLYRFLPKKIAVDTFSNLDQSTQNKLLNSF 78 (449)
T ss_pred HHHHHhcCCHHHHHHHHHhCCHHHHHHHHHhCChhhHHHHHHcCCHHHHHHHHHhC
Confidence 34444444444444444444333222222212222223344444444444444444
No 43
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=37.94 E-value=2.7e+02 Score=30.51 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=65.6
Q ss_pred HHHHHhhhCCHHHHHHHHHHHh-Hh-----HHHhhccccccchhhHhhhcC---CHHHHHHHH-HHHhhhHHHhhhcccc
Q 003398 509 FIQQKLEAATAEEKTRIFPEII-PH-----ARTLMTDVFGNYVIQKFFEHG---TESQRAQLA-SQLTGHVLRLSLQMYG 578 (823)
Q Consensus 509 vLQ~lLe~~s~Eqr~~If~EL~-~~-----~~~L~tD~~GshVIQKLLe~~---s~eqr~~Li-~~L~g~~~~Ls~h~yG 578 (823)
..=++|-.+++.|.+.+.+++. +. +..||. .++... +...-..++ ..+.+++..| ..-+
T Consensus 39 ~~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~---------~ll~Ls~dls~~~a~~l~~sl~LpkilsL--~~~A 107 (263)
T PF11510_consen 39 SELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCS---------SLLALSPDLSHSNATVLLRSLFLPKILSL--EEPA 107 (263)
T ss_dssp HHHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHH---------HHHH-SS---HHHHHHHHHHHHHHHHHH---SS--
T ss_pred HHHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHH---------HHHccCcccchhhHHHHHHHHHHHHHHhc--CCCc
Confidence 3444567789999999999886 22 333333 122111 111112222 3356777666 6688
Q ss_pred chHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcc-cCC---hHHHHHH--HhCChhhHHHHHHhhhhhhhHhhcCcCcch
Q 003398 579 CRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQ-NGN---HVIQKCI--ECIPQDRIQFIISSFYGQVVALSTHPYGCR 652 (823)
Q Consensus 579 SrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq-~Gn---hVIQk~L--e~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~ 652 (823)
+|++..++..+-...-..+++.+...+ +.++ .|+ -++.+++ ++.+++.+..++..+.+ +.-...-..
T Consensus 108 SR~L~sal~~f~k~~p~~~~~all~Pl---L~~~~~g~~Q~eLl~rlvk~~~l~p~~~~l~l~~~L~----~~W~E~~~~ 180 (263)
T PF11510_consen 108 SRLLVSALTSFCKKYPRPVCEALLVPL---LQAPGLGPPQCELLCRLVKKECLEPDHRLLLLRQILE----LVWNEETFL 180 (263)
T ss_dssp -HHHHHHHHHHHHHSHHHHHHHHHHHH---HHSTT--HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH----S---HHHHH
T ss_pred cHHHHHHHHHHHHhCcHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CcCcHHHHH
Confidence 999888885544444445555443332 2222 222 2555666 46677777666554432 222233356
Q ss_pred hHHHHHhhC
Q 003398 653 VIQRVLEHC 661 (823)
Q Consensus 653 VVQklLe~~ 661 (823)
|+|.+++..
T Consensus 181 Vlq~lL~~k 189 (263)
T PF11510_consen 181 VLQSLLERK 189 (263)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhcC
Confidence 888888874
No 44
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.86 E-value=9.2e+02 Score=30.30 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=27.2
Q ss_pred HHhHhHHHhhccccccchhhHhhhcC------CHHHHHHHHHHHh
Q 003398 528 EIIPHARTLMTDVFGNYVIQKFFEHG------TESQRAQLASQLT 566 (823)
Q Consensus 528 EL~~~~~~L~tD~~GshVIQKLLe~~------s~eqr~~Li~~L~ 566 (823)
.+.|-|..||++.--|.++-|+|+.. .|...+.+++-|.
T Consensus 218 ~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt 262 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPIT 262 (877)
T ss_pred cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHH
Confidence 35578899999999999999988752 2444445554443
No 45
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=37.41 E-value=6.5e+02 Score=28.38 Aligned_cols=38 Identities=11% Similarity=-0.015 Sum_probs=21.5
Q ss_pred HhhcCcchHHHHHHHHhcCChhHHHHHHHHHHHhHHHH
Q 003398 758 AMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVL 795 (823)
Q Consensus 758 ~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~L 795 (823)
.++....-.-.+-.+|...++..|+.|++.|..-..++
T Consensus 250 a~iL~~v~~~~la~aLkg~~~e~r~~il~nmS~Raa~~ 287 (334)
T PRK07194 250 QRLMDEVPMELWAVALKGTEPALRQAILRVMPKRQAQA 287 (334)
T ss_pred HHHHHhCCHHHHHHHHccCCHHHHHHHHHHccHHHHHH
Confidence 33333444555666666667777777766665444433
No 46
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.93 E-value=9.8e+02 Score=30.34 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=21.9
Q ss_pred hhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhh
Q 003398 492 DIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLM 537 (823)
Q Consensus 492 eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~ 537 (823)
||+--|.++-.|--..-+||.++++-.+.+.-.-+.|++..+-+|+
T Consensus 717 eik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~ 762 (1102)
T KOG1924|consen 717 EIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLP 762 (1102)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 4444444444444455555555555554433344444554444443
No 47
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=36.80 E-value=1.9e+02 Score=33.76 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=20.0
Q ss_pred hhhcCCHHHHHHHHHHHhhh-HHHhhhccccchHHHHhhhhcChHHH
Q 003398 549 FFEHGTESQRAQLASQLTGH-VLRLSLQMYGCRVIQKALEVVHVDQQ 594 (823)
Q Consensus 549 LLe~~s~eqr~~Li~~L~g~-~~~Ls~h~yGSrVVQklLe~~~~eq~ 594 (823)
+++..+.+....+++.+... ..++. +.--....++++..++++++
T Consensus 74 ll~~l~~~~~~~~~~~l~~dd~~~ll-~~l~~~~~~~lL~~l~~~er 119 (449)
T TIGR00400 74 LLNSFTNKEISEMINEMNLDDVIDLL-EEVPANVVQQLLASSTEEER 119 (449)
T ss_pred HHHhCCHHHHHHHHHcCChhHHHHHH-HhCCHHHHHHHHHcCCHHHH
Confidence 44555555555555444322 22222 22223345555666665555
No 48
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.28 E-value=9.2e+02 Score=30.73 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=32.9
Q ss_pred chhHHHHHhhCCCHHHHHHHHHHHHHHHHHHh----cCCCccHHHHHHHhcCCchh
Q 003398 651 CRVIQRVLEHCDDANTQQIIMDEIMQHVCNLA----QDQYGNYVIQHVLEHGKPHE 702 (823)
Q Consensus 651 s~VVQklLe~~~~~~~~~~Il~eLl~~l~~La----~DqyGNyVVQ~lLe~~~~~~ 702 (823)
-++++.+|...........-+.-+++.+..|. .|.+|-|++++++++-.+..
T Consensus 701 vrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~ 756 (960)
T KOG1992|consen 701 VRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNE 756 (960)
T ss_pred HHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhh
Confidence 36777777764322111122445566666555 68899999999999877553
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=34.17 E-value=8.7e+02 Score=28.90 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=12.9
Q ss_pred chhhHhhhcCCHHHHHHHHHHH
Q 003398 544 YVIQKFFEHGTESQRAQLASQL 565 (823)
Q Consensus 544 hVIQKLLe~~s~eqr~~Li~~L 565 (823)
-++++.+.+..+..|...+..+
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l 101 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQL 101 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHH
Confidence 3455566676766666555543
No 50
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=33.10 E-value=1.1e+03 Score=29.91 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=28.4
Q ss_pred hhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHH
Q 003398 545 VIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQ 594 (823)
Q Consensus 545 VIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~ 594 (823)
+++.++. .+.+.|+.....+...+.+|..+. +..+|.++.+..+..
T Consensus 532 ~~~~~~~-~~~~~rr~~~~~lq~k~~~l~~n~---~LfeKgl~lF~dd~~ 577 (803)
T PLN03083 532 RRKALFT-ENAERRRRLLDNLQKKIDESFLNM---QLYEKALDLFEDDQS 577 (803)
T ss_pred HHHHHHh-cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhCCcccc
Confidence 3566666 566667777777777666666554 455666666554433
No 51
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=32.67 E-value=1.7e+02 Score=32.04 Aligned_cols=28 Identities=18% Similarity=0.422 Sum_probs=16.8
Q ss_pred HHHHHhHHhHHhhcCCchHHHHHHHHHh
Q 003398 705 TVITQLAGQIVRMSQQKFASNVVEKCLT 732 (823)
Q Consensus 705 ~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~ 732 (823)
.+++.+..-+..|+.+..+-..+..|+-
T Consensus 204 RLLKhIIrCYlRLsdnprar~aL~~~LP 231 (262)
T PF04078_consen 204 RLLKHIIRCYLRLSDNPRAREALRQCLP 231 (262)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHHHHS-
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 5666666666666666666555555553
No 52
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.94 E-value=6.5e+02 Score=29.59 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=21.4
Q ss_pred hHHHhhhccccchHHHHhhhhc--ChHHHHHHHHhhhhhH
Q 003398 568 HVLRLSLQMYGCRVIQKALEVV--HVDQQTQMVAELDGSV 605 (823)
Q Consensus 568 ~~~~Ls~h~yGSrVVQklLe~~--~~eq~~~Ll~EL~~~i 605 (823)
-+..|+..+.|-.+|+.+.+.+ ...+...-+..+.|.+
T Consensus 238 ~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv 277 (464)
T PF11864_consen 238 TMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAV 277 (464)
T ss_pred HHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHH
Confidence 3556666777777777777766 3333333444444444
No 53
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=31.90 E-value=7.3e+02 Score=30.22 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=12.4
Q ss_pred HHHHHHhcCCchhHHHHHHHhHHhHHh
Q 003398 690 VIQHVLEHGKPHERTTVITQLAGQIVR 716 (823)
Q Consensus 690 VVQ~lLe~~~~~~r~~Ii~~L~g~iv~ 716 (823)
+|..++.++.-+.-+++++.|...++.
T Consensus 166 lind~~~hcqrk~~~~~~~~l~~~v~~ 192 (757)
T KOG4368|consen 166 LINDVLHHCQRKQARELLAALQKVVVP 192 (757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333344444444444555555544433
No 54
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=30.72 E-value=1.2e+03 Score=29.64 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=36.7
Q ss_pred HHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchH
Q 003398 534 RTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRV 581 (823)
Q Consensus 534 ~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrV 581 (823)
++.+.+-.+++-.|=|++|-....+..|++.|+.|+-.++.|.+.++-
T Consensus 172 lE~lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~~ 219 (988)
T KOG2072|consen 172 LEALYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQSTR 219 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 355556666667777778877888888899999999998888887643
No 55
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.06 E-value=5.9e+02 Score=25.07 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHH-HHHhcCCCCchhHHHhhcCcc-hHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhhCCC
Q 003398 723 ASNVVEKCLTFGSPEERQLLI-NEMLGSTDENEPLQAMMKDPF-GNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTY 800 (823)
Q Consensus 723 GS~VVEkcL~~a~~k~Rk~Ii-~eLl~~~~~~e~L~~La~D~~-GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~~~y 800 (823)
+=.++|.|.+.|+......|. ++++ +.+..++.+.| | ...+.+++++|++-|..=-..+...+.
T Consensus 58 AL~LLe~~vkNCG~~fh~evas~~Fl------~el~kl~~~k~~~--------~~~~~~Vk~kil~li~~W~~~f~~~p~ 123 (139)
T cd03567 58 ALTVLEACMKNCGERFHSEVGKFRFL------NELIKLVSPKYLG--------SRTSEKVKTKIIELLYSWTLELPHEPK 123 (139)
T ss_pred HHHHHHHHHHHcCHHHHHHHHhHHHH------HHHHHHhccccCC--------CCCCHHHHHHHHHHHHHHHHHhcccch
Confidence 445889999998887776666 4444 22555554322 1 112445566666666555555543333
Q ss_pred chHHHHHHHHHHHcC
Q 003398 801 GKHIVSRIEKLIATG 815 (823)
Q Consensus 801 Gk~Vl~~lek~~~~g 815 (823)
+.+.-+.+-+.|
T Consensus 124 ---~~~~Y~~Lk~~G 135 (139)
T cd03567 124 ---IKEAYDMLKKQG 135 (139)
T ss_pred ---HHHHHHHHHHCC
Confidence 444444444444
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=27.14 E-value=1.2e+03 Score=28.54 Aligned_cols=237 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHH---HHHHH
Q 003398 523 TRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQ---TQMVA 599 (823)
Q Consensus 523 ~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~---~~Ll~ 599 (823)
++++-|....+..++..-.|.-.++..+ .++|.++..-....| ..++.
T Consensus 278 emV~lE~Ar~v~~~~~~nv~~~~~~~~v-----------------------------s~L~~fL~s~rv~~rFsA~Riln 328 (898)
T COG5240 278 EMVFLEAARAVCALSEENVGSQFVDQTV-----------------------------SSLRTFLKSTRVVLRFSAMRILN 328 (898)
T ss_pred hhhhHHHHHHHHHHHHhccCHHHHHHHH-----------------------------HHHHHHHhcchHHHHHHHHHHHH
Q ss_pred hhh-----------hhHHHHhhccc---CChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCC-H
Q 003398 600 ELD-----------GSVMKCVHDQN---GNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD-A 664 (823)
Q Consensus 600 EL~-----------~~i~~LvkDq~---GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~-~ 664 (823)
+|. .++..|+.|.| ..|-|-.+++.+..+.+..+++.+-.-+-+++ +.+---+|..+-..|-. |
T Consensus 329 ~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~S-D~FKiI~ida~rsLsl~Fp 407 (898)
T COG5240 329 QLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMS-DGFKIIAIDALRSLSLLFP 407 (898)
T ss_pred HHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhc-cCceEEeHHHHHHHHhhCc
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCC--chhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhC-----CHH
Q 003398 665 NTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK--PHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG-----SPE 737 (823)
Q Consensus 665 ~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~--~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a-----~~k 737 (823)
.++..+++-+...++.=--=.|-+|.|..+...-. |+.++..++.|...+..--.++..-+++--+=+.+ +.+
T Consensus 408 ~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~ 487 (898)
T COG5240 408 SKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGK 487 (898)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcch
Q ss_pred HHHHHHHHHhcCCC--CchhHHHh------hcCcchHHHHHHHHhcC----ChhHHHHHHHHHH
Q 003398 738 ERQLLINEMLGSTD--ENEPLQAM------MKDPFGNYVVQKVLETC----DDQSLELILSRIR 789 (823)
Q Consensus 738 ~Rk~Ii~eLl~~~~--~~e~L~~L------a~D~~GnyVIqklL~~~----ddt~rk~Il~eLk 789 (823)
.-..|++.++-... +...+..| +.|++-..-|..+|..| ||..|+..-=.++
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~ 551 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLR 551 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHH
No 57
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.24 E-value=7.2e+02 Score=27.13 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=43.9
Q ss_pred hCCHHHHHHHHHHHhHhHHHhhccc------cccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhcccc-chHHHHhhhh
Q 003398 516 AATAEEKTRIFPEIIPHARTLMTDV------FGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYG-CRVIQKALEV 588 (823)
Q Consensus 516 ~~s~Eqr~~If~EL~~~~~~L~tD~------~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yG-SrVVQklLe~ 588 (823)
..+.......+.-+.|-++.|+-|- -|..++..+++.+.... .....++| ..|++.++..
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-------------~~~L~~tGl~~v~~~al~~ 173 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-------------WDILRRTGLFSVFEDALFP 173 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-------------hHHHHHcChHHHHHHHHHH
Confidence 4444455566677777777776663 35555555665554443 01122222 3344444422
Q ss_pred ----cC----hHHHHHHHHhhhhhHHHHhhc
Q 003398 589 ----VH----VDQQTQMVAELDGSVMKCVHD 611 (823)
Q Consensus 589 ----~~----~eq~~~Ll~EL~~~i~~LvkD 611 (823)
+. .++-..++.+.++.+..|++-
T Consensus 174 ~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 174 CLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 11 255567777777777766543
No 58
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=25.50 E-value=5e+02 Score=30.48 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=23.3
Q ss_pred HHHHHHHhCChh-----hHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCC
Q 003398 617 VIQKCIECIPQD-----RIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCD 662 (823)
Q Consensus 617 VIQk~Le~~~~e-----~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~ 662 (823)
+++..|++.+.. ...-|+..|..-+..-+.+.+|-.+++.+++++.
T Consensus 182 LL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p 232 (435)
T PF03378_consen 182 LLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLP 232 (435)
T ss_dssp HHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCC
Confidence 555555554432 2234444444444444455566677777777764
No 59
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=25.05 E-value=1.2e+03 Score=27.67 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=57.7
Q ss_pred HHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHH-----
Q 003398 693 HVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNY----- 767 (823)
Q Consensus 693 ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~Gny----- 767 (823)
.++....+...++|+......+-.++. +.-+.++..+++..=++.|-..++-|. .|+.++||-.
T Consensus 363 ~il~~~~~~~~~~i~~~~~~w~~~~~~-~~~~~~l~~~~~qPF~elr~a~~~~l~----------~l~~~~Wg~~~i~~~ 431 (503)
T PF10508_consen 363 SILTSGTDRQDNDILSITESWYESLSG-SPLSNLLMSLLKQPFPELRCAAYRLLQ----------ALAAQPWGQREICSS 431 (503)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhcC-CchHHHHHHHhcCCchHHHHHHHHHHH----------HHhcCHHHHHHHHhC
Confidence 344545544555555333333444443 333336667776655677766655543 5556666554
Q ss_pred --HHHHHHhcCChhH------HHHHHHHHHHhHHHHhhCCCc-hHHHHHHHHHHHcC
Q 003398 768 --VVQKVLETCDDQS------LELILSRIRVHLNVLKKYTYG-KHIVSRIEKLIATG 815 (823)
Q Consensus 768 --VIqklL~~~ddt~------rk~Il~eLk~~L~~La~~~yG-k~Vl~~lek~~~~g 815 (823)
++..+++...++. |-.|++.|........ .-++ ...+.+++++++.|
T Consensus 432 ~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~~~~-~~~~~~~~~~kL~~yv~eG 487 (503)
T PF10508_consen 432 PGFIEYLLDRSTETTKEGKEAKYDIIKALAKSSTNAS-SVFDDPEYLGKLQEYVREG 487 (503)
T ss_pred ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcccchh-hcCCCHHHHHHHHHHHHcC
Confidence 4555666554332 2345555543332111 2233 34555899999887
No 60
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.86 E-value=5.4e+02 Score=32.62 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHhhhCCHHHH-HHHHHHHhHhHHHh----hccccccchhhHhhhcCCHH
Q 003398 508 RFIQQKLEAATAEEK-TRIFPEIIPHARTL----MTDVFGNYVIQKFFEHGTES 556 (823)
Q Consensus 508 RvLQ~lLe~~s~Eqr-~~If~EL~~~~~~L----~tD~~GshVIQKLLe~~s~e 556 (823)
|++|.+|+.++.... ..-+.-|.+.+-.| +.|.+|=++++.++++.++.
T Consensus 702 rLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~ 755 (960)
T KOG1992|consen 702 RLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPN 755 (960)
T ss_pred HHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHh
Confidence 566666666654322 11122333444333 33667777777777666554
No 61
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.71 E-value=9.4e+02 Score=26.22 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=33.6
Q ss_pred ccchHHHHhhh-hcChHHHHHHHHhhhhhHHHHhhcc------cCChHHHHHHHhCChhh
Q 003398 577 YGCRVIQKALE-VVHVDQQTQMVAELDGSVMKCVHDQ------NGNHVIQKCIECIPQDR 629 (823)
Q Consensus 577 yGSrVVQklLe-~~~~eq~~~Ll~EL~~~i~~LvkDq------~GnhVIQk~Le~~~~e~ 629 (823)
++++|+.-++. ..+.....+.+.-+.+.++.++-|. .|..++.++++..+...
T Consensus 95 ~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred ccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 33456666666 6666666666666677777666653 46677777777666554
No 62
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=23.05 E-value=1.3e+03 Score=27.47 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=8.9
Q ss_pred HHHHHhHHHHhh
Q 003398 786 SRIRVHLNVLKK 797 (823)
Q Consensus 786 ~eLk~~L~~La~ 797 (823)
+++++|+..|-.
T Consensus 482 ~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 482 EEMEPHLEQLTS 493 (516)
T ss_pred HhhhhHhhhccH
Confidence 777888887744
No 63
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=20.78 E-value=1.1e+03 Score=25.68 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=37.7
Q ss_pred CcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCC---chhHHHHHHHhHHhHHhhcCC-chHH
Q 003398 649 YGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK---PHERTTVITQLAGQIVRMSQQ-KFAS 724 (823)
Q Consensus 649 ~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~---~~~r~~Ii~~L~g~iv~Ls~~-K~GS 724 (823)
+-+.+|.++++.+..++..-.+...++.. .++.-+..--.|+|.+|+..- ++....++..+..+-..++.+ |||-
T Consensus 134 ~q~ell~rlike~~~~~~~~l~~~q~L~~-~~~~W~E~~~~v~q~lL~~~~~lte~~~~~Lv~~L~~~a~~~skSlkFa~ 212 (254)
T cd07439 134 FQAELLCRLVKECFEPDAVLLLLHQILIS-PNLVWTEETFTVIQALLNRKPPLSEESFSELVSKLQEQAEAFSKSLKFAK 212 (254)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHcc-ccccccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 33456667776665544443333333321 111122222347888887643 444555556665555555543 4443
Q ss_pred HH
Q 003398 725 NV 726 (823)
Q Consensus 725 ~V 726 (823)
-+
T Consensus 213 ll 214 (254)
T cd07439 213 LL 214 (254)
T ss_pred HH
Confidence 33
No 64
>PF03299 TF_AP-2: Transcription factor AP-2; InterPro: IPR013854 Activator protein-2 (AP-2) transcription factors constitute a family of closely related and evolutionarily conserved proteins that bind to the DNA consensus sequence GCCNNNGGC and stimulate target gene transcription [, ]. Four different isoforms of AP-2 have been identified in mammals, termed AP-2 alpha, beta, gamma and delta. Each family member shares a common structure, possessing a proline/glutamine-rich domain in the N-terminal region, which is responsible for transcriptional activation [], and a helix-span-helix domain in the C-terminal region, which mediates dimerisation and site-specific DNA binding []. The AP-2 family have been shown to be critical regulators of gene expression during embryogenesis. They regulate the development of facial prominence and limb buds, and are essential for cranial closure and development of the lens []; they have also been implicated in tumourigenesis. AP-2 protein expression levels have been found to affect cell transformation, tumour growth and metastasis, and may predict survival in some types of cancer [, ] This entry represents the C-terminal region of these proteins, including the helix-span-helix domain.
Probab=20.78 E-value=6.5e+02 Score=26.59 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHHHHHHhhCCCcCHHHHHHhhhCCH----HHH-----HHHHHHHhHhHHHhhcc
Q 003398 494 VDHVVEFSTDQYGSRFIQQKLEAATA----EEK-----TRIFPEIIPHARTLMTD 539 (823)
Q Consensus 494 ~GkiveLA~Dq~GSRvLQ~lLe~~s~----Eqr-----~~If~EL~~~~~~L~tD 539 (823)
-|-+..-++.+.|.+.|...|+.... ..| ..+..-+.+....|+.|
T Consensus 43 lg~~LRraK~k~~g~~lr~~L~~~gi~l~~~rrk~~~~t~~tsL~EgEAvhLA~D 97 (209)
T PF03299_consen 43 LGGVLRRAKSKNGGRSLREKLEKHGINLPAGRRKAANVTLFTSLVEGEAVHLARD 97 (209)
T ss_pred HHHHHHHhcccchHHHHHHHHHHcCCCCccccccccccchhHHHHHHHHHHHHHH
Confidence 34467778889999999888876321 112 22333345666666666
No 65
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.54 E-value=1.5e+03 Score=27.23 Aligned_cols=170 Identities=17% Similarity=0.226 Sum_probs=80.2
Q ss_pred hhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHH-----hCChhhHHHHHHh-hhhhhhHhh
Q 003398 572 LSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIE-----CIPQDRIQFIISS-FYGQVVALS 645 (823)
Q Consensus 572 Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le-----~~~~e~~~~Ii~~-f~g~l~~Ls 645 (823)
++..+...+++-.+....++.-...-++++.+-+..|+.+..-.-+...|-. .++.+.++.+++. +..+++++.
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 4555556666666665554333334445555555555555444333333222 2455666666543 667777777
Q ss_pred cCcCcchhHHHHHh-----hCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHH---HH---hcCCchhHHHHHHH-hHHh
Q 003398 646 THPYGCRVIQRVLE-----HCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQH---VL---EHGKPHERTTVITQ-LAGQ 713 (823)
Q Consensus 646 ~hk~Gs~VVQklLe-----~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~---lL---e~~~~~~r~~Ii~~-L~g~ 713 (823)
.|..+.-++-.+-. .+.+.++...|-.-.+..+..|....+-..+-.. +| ..++.++...+++. +...
T Consensus 289 ~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~ 368 (514)
T KOG0166|consen 289 GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPV 368 (514)
T ss_pred cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHH
Confidence 77766444222221 2223333333333556666666654333332221 11 11444454444443 3333
Q ss_pred HHhhcC------CchHHHHHHHHHhhCCHHHHHH
Q 003398 714 IVRMSQ------QKFASNVVEKCLTFGSPEERQL 741 (823)
Q Consensus 714 iv~Ls~------~K~GS~VVEkcL~~a~~k~Rk~ 741 (823)
++.+.+ .|.+.-+|-.+...+++++-+.
T Consensus 369 Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 369 LINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 333332 2334445555555555544333
Done!