Query 003398
Match_columns 823
No_of_seqs 322 out of 1687
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 23:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 4E-65 1.4E-69 562.1 27.2 343 472-815 3-346 (351)
2 3k49_A MRNA-binding protein PU 100.0 2.6E-64 8.8E-69 559.1 24.9 347 472-819 3-368 (369)
3 3k62_A FEM-3 mRNA-binding fact 100.0 1.2E-60 4.1E-65 537.1 26.5 343 456-814 4-405 (412)
4 3v71_A PUF (pumilio/FBF) domai 100.0 5.6E-59 1.9E-63 519.2 23.7 324 487-810 10-380 (382)
5 3bwt_A Protein PUF4; pumilio, 100.0 4E-58 1.4E-62 501.8 19.4 319 487-809 5-332 (333)
6 3gvo_A Pumilio 2, pumilio homo 100.0 4.8E-43 1.6E-47 386.1 17.7 265 469-734 69-343 (351)
7 3bwt_A Protein PUF4; pumilio, 100.0 2.2E-40 7.5E-45 361.7 20.3 277 525-813 7-293 (333)
8 3k49_A MRNA-binding protein PU 100.0 3.6E-39 1.2E-43 357.5 17.6 300 505-811 3-323 (369)
9 3k62_A FEM-3 mRNA-binding fact 100.0 5.7E-38 2E-42 352.9 19.7 266 468-734 75-403 (412)
10 3v71_A PUF (pumilio/FBF) domai 100.0 2.1E-35 7.2E-40 329.2 22.2 300 469-774 27-380 (382)
11 3u0r_A Apoptosis inhibitor 5; 72.1 21 0.00074 40.5 11.6 172 483-659 76-267 (507)
12 3hjl_A Flagellar motor switch 68.2 1.3E+02 0.0046 32.3 22.3 54 550-603 49-103 (329)
13 2of3_A ZYG-9; multifunctional 66.5 1.3E+02 0.0044 31.4 16.5 125 651-790 131-263 (266)
14 1wdy_A 2-5A-dependent ribonucl 57.9 83 0.0028 30.8 11.9 185 539-735 36-231 (285)
15 1k1a_A B-cell lymphoma 3-encod 52.8 95 0.0032 29.8 11.2 131 502-635 5-137 (241)
16 3hjl_A Flagellar motor switch 51.0 2.6E+02 0.0089 30.0 16.0 36 762-797 196-231 (329)
17 2yvy_A MGTE, Mg2+ transporter 49.1 77 0.0026 32.5 10.3 19 617-635 110-128 (278)
18 2pnn_A Transient receptor pote 43.9 1E+02 0.0036 30.5 10.1 193 502-699 9-245 (273)
19 2ilr_A Protein FACE, fanconi a 37.2 2.8E+02 0.0095 29.0 12.0 66 651-720 145-214 (264)
20 2etb_A Transient receptor pote 33.6 2.3E+02 0.008 27.5 10.7 190 510-703 6-237 (256)
21 2f8y_A Notch homolog 1, transl 32.7 2.3E+02 0.0078 26.7 10.2 124 503-635 22-146 (223)
22 3u0r_A Apoptosis inhibitor 5; 31.5 6.3E+02 0.021 28.7 16.3 103 698-808 146-265 (507)
23 3jxi_A Vanilloid receptor-rela 30.7 3.8E+02 0.013 25.9 12.9 191 506-701 5-239 (260)
24 4hxt_A De novo protein OR329; 30.2 3.6E+02 0.012 25.6 13.9 21 726-746 174-194 (252)
25 1k1a_A B-cell lymphoma 3-encod 28.6 2.3E+02 0.008 26.9 9.5 196 537-748 4-204 (241)
26 2fv2_A RCD1 required for cell 27.6 1.5E+02 0.005 31.1 7.9 27 705-731 210-236 (268)
27 3pkr_A FLIG, flagellar motor s 27.6 3.5E+02 0.012 28.3 11.0 108 553-661 115-226 (279)
28 2ilr_A Protein FACE, fanconi a 27.1 5.5E+02 0.019 26.7 14.8 28 575-602 32-60 (264)
29 2yvy_A MGTE, Mg2+ transporter 27.0 2.1E+02 0.007 29.2 9.2 17 549-565 39-55 (278)
30 2rfa_A Transient receptor pote 26.9 3.5E+02 0.012 25.6 10.4 29 683-711 150-178 (232)
31 3eu9_A Huntingtin-interacting 26.8 3E+02 0.01 25.8 10.0 123 505-635 8-130 (240)
32 1x5b_A Signal transducing adap 24.7 2.8E+02 0.0096 26.5 9.0 76 723-816 72-148 (163)
33 3hra_A Ankyrin repeat family p 23.7 3.6E+02 0.012 24.8 9.6 93 538-635 35-127 (201)
34 2oux_A Magnesium transporter; 23.4 3.1E+02 0.01 28.1 9.7 19 584-602 79-97 (286)
35 2rfa_A Transient receptor pote 21.6 5.1E+02 0.017 24.4 11.6 158 538-700 33-210 (232)
36 1oy3_D Transcription factor in 21.0 4.5E+02 0.015 25.4 10.1 61 503-563 6-66 (282)
37 4fhr_B Flagellar motor switch 20.9 3.8E+02 0.013 26.9 9.4 52 551-602 55-110 (216)
38 3pkr_A FLIG, flagellar motor s 20.7 5.1E+02 0.018 27.1 10.7 24 549-572 57-80 (279)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=4e-65 Score=562.08 Aligned_cols=343 Identities=56% Similarity=0.952 Sum_probs=328.7
Q ss_pred hhhHHHHHhhccccccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhh
Q 003398 472 LSSSLLDEFKTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFE 551 (823)
Q Consensus 472 ~~s~LLeef~s~e~k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe 551 (823)
-||.|+|+|+.++.+.+.++++.|+++++|+||+|||+||++|+.+++++++.||+|+.+++.+||+|+||||||||+|+
T Consensus 3 ~~~~l~e~~r~~~~~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle 82 (351)
T 3gvo_A 3 GRSRLLEDFRNNRFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFE 82 (351)
T ss_dssp CCCHHHHHHHTTCCTTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHH
T ss_pred CccHHHHHHhCCCCCCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHH
Q 003398 552 HGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQ 631 (823)
Q Consensus 552 ~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~ 631 (823)
+++++++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|++||.+++..|++|++||||||+||++.+++.+.
T Consensus 83 ~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~ 162 (351)
T 3gvo_A 83 FGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 162 (351)
T ss_dssp HCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTH
T ss_pred hCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHHHHHHHhH
Q 003398 632 FIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLA 711 (823)
Q Consensus 632 ~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~ 711 (823)
+|++.+.+++..|++|+|||+|||++|+++. ++.+..|++++.+++..|++|+|||||||++|+++.++.++.|++.+.
T Consensus 163 ~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~-~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~ 241 (351)
T 3gvo_A 163 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCT-AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 241 (351)
T ss_dssp HHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHCC-HHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 9999999999999999999999999999986 455677999999999999999999999999999999999999999999
Q ss_pred HhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcCCCC-chhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHH
Q 003398 712 GQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGSTDE-NEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRV 790 (823)
Q Consensus 712 g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~-~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~ 790 (823)
++++.|+++||||+|||+||+++++++|+.|+++|+...++ .+.+..|+.|+|||||||++|+.+++++|+.|+++|++
T Consensus 242 ~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~ 321 (351)
T 3gvo_A 242 GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRP 321 (351)
T ss_dssp TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999964221 24799999999999999999999999999999999999
Q ss_pred hHHHHhhCCCchHHHHHHHHHHHcC
Q 003398 791 HLNVLKKYTYGKHIVSRIEKLIATG 815 (823)
Q Consensus 791 ~L~~La~~~yGk~Vl~~lek~~~~g 815 (823)
++..|+.++||++|++++|+++...
T Consensus 322 ~~~~L~~~~~g~~i~~kl~~~~~~~ 346 (351)
T 3gvo_A 322 HITTLRKYTYGKHILAKLEKYYLKN 346 (351)
T ss_dssp GHHHHTTSTTTHHHHHHHHHHTC--
T ss_pred HHHHHhcCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999998643
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=2.6e-64 Score=559.15 Aligned_cols=347 Identities=45% Similarity=0.734 Sum_probs=323.8
Q ss_pred hhhHHHHHhhcccc-----ccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchh
Q 003398 472 LSSSLLDEFKTNKT-----RSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVI 546 (823)
Q Consensus 472 ~~s~LLeef~s~e~-----k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVI 546 (823)
+||.|+|+|+.+.. +.+.++++.|+++++|+||+|||+||++|+++++++++.||+||.+++.+||+|+||||||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 57999999999864 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCC
Q 003398 547 QKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIP 626 (823)
Q Consensus 547 QKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~ 626 (823)
||+|++++++++..|++.+.+++.+|+.|+|||||||++++.++++++..|++||.+++..|++|++||||||+||+.++
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchh----
Q 003398 627 QDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHE---- 702 (823)
Q Consensus 627 ~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~---- 702 (823)
++.+.+|++.+.+++..|+.|++||+|+|+||+++. ++.+..|++++.+.+..|++|+|||||||++|+.+.++.
T Consensus 163 ~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 999999999999999999999999999999999986 445677899999999999999999999999999998764
Q ss_pred --HHHHHHHhHHhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcCC-------CCchhHHHhhcCcchHHHHHHHH
Q 003398 703 --RTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGST-------DENEPLQAMMKDPFGNYVVQKVL 773 (823)
Q Consensus 703 --r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~-------~~~e~L~~La~D~~GnyVIqklL 773 (823)
++.|++.+.+++++|+++||||+|||+||.++++++|+.|+++|+... ++++.+..|++|+|||||||++|
T Consensus 242 ~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l 321 (369)
T 3k49_A 242 DIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLV 321 (369)
T ss_dssp HHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHH
Confidence 678999999999999999999999999999999999999999998752 23467999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHhHHHHhh-CCCchHHHHHHHHHHHcCCCCC
Q 003398 774 ETCDDQSLELILSRIRVHLNVLKK-YTYGKHIVSRIEKLIATGGEGS 819 (823)
Q Consensus 774 ~~~ddt~rk~Il~eLk~~L~~La~-~~yGk~Vl~~lek~~~~g~~~s 819 (823)
+.++++.|+.|+++|++++.+|+. ++||++|+++||++++.++-..
T Consensus 322 ~~~~~~~~~~l~~~i~p~l~~L~~~~~~G~~~~~~~e~~~~~~~~~~ 368 (369)
T 3k49_A 322 NVSEGEGKKLIVIAIRAYLDKLNKSNSLGNRHLASVEKLAALVENAE 368 (369)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHC---
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHHHhhcc
Confidence 999999999999999999999987 5999999999999999876543
No 3
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.2e-60 Score=537.11 Aligned_cols=343 Identities=29% Similarity=0.538 Sum_probs=310.6
Q ss_pred CCCCCccCcCCCcchhhhhHHHHHhhccccccccHhhh--HHHHHHHhhCCCcCHHHHHHhhhC-CHHHHHHHHHHHhHh
Q 003398 456 GPMPWHLDAGINMEGRLSSSLLDEFKTNKTRSFELSDI--VDHVVEFSTDQYGSRFIQQKLEAA-TAEEKTRIFPEIIPH 532 (823)
Q Consensus 456 ~~~~w~~~r~~~~~~~~~s~LLeef~s~e~k~~~L~eI--~GkiveLA~Dq~GSRvLQ~lLe~~-s~Eqr~~If~EL~~~ 532 (823)
..+.|..|+.+++..+ +.|.++ +|+++++|+||+||||||++|+++ ++++++.||+||.++
T Consensus 4 ~~~~w~~~~~~~~~~~----------------~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~ 67 (412)
T 3k62_A 4 VLPTWSLDSNGEMRSR----------------LSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGR 67 (412)
T ss_dssp -CCGGGBCTTSSBCTT----------------CCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSS
T ss_pred cCccchhcccCCCCCC----------------CcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 3578999998876543 456666 599999999999999999999997 899999999999875
Q ss_pred ---HHHhhccccccchhhHhhhcCCH-------HHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhh-
Q 003398 533 ---ARTLMTDVFGNYVIQKFFEHGTE-------SQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAEL- 601 (823)
Q Consensus 533 ---~~~L~tD~~GshVIQKLLe~~s~-------eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL- 601 (823)
+.+||+|+||||||||+|+++++ +++..|++.+.+++.+|+.|+|||||||++|+.++.+++..|++||
T Consensus 68 ~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~ 147 (412)
T 3k62_A 68 KDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALP 147 (412)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSC
T ss_pred hhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 89999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred -hhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhh--hhhhHhhcCcCcchhHHHHHhhCCCH-----------HHH
Q 003398 602 -DGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFY--GQVVALSTHPYGCRVIQRVLEHCDDA-----------NTQ 667 (823)
Q Consensus 602 -~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~--g~l~~Ls~hk~Gs~VVQklLe~~~~~-----------~~~ 667 (823)
.+++..|++|++||||||+||+.++++.+++|++.+. +++.++++|+|||+|||+||++|.++ +++
T Consensus 148 ~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr 227 (412)
T 3k62_A 148 RDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLR 227 (412)
T ss_dssp CSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHH
T ss_pred ccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHH
Confidence 6899999999999999999999999999999999998 59999999999999999999999753 233
Q ss_pred H----HHHHHHHHHHHHHhcCCCccHHHHHHHhcCCch-hHHHHHH-HhHHhHHhhcCCchHHHHHHHHHhhCCHHHHHH
Q 003398 668 Q----IIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPH-ERTTVIT-QLAGQIVRMSQQKFASNVVEKCLTFGSPEERQL 741 (823)
Q Consensus 668 ~----~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~-~r~~Ii~-~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~ 741 (823)
. .++++|..++..|++|+|||||||++|+++.++ .|..|++ .|.+++++||++||||+||||||+++++++|+.
T Consensus 228 ~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ 307 (412)
T 3k62_A 228 ERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAE 307 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHH
Confidence 2 356778888999999999999999999999876 4788887 599999999999999999999999999999999
Q ss_pred HHHHHhcC----C-CCchhHHHhhcCcchHHHHHHHHhcCChh--------------------HHHHHHHHHHHhHHHHh
Q 003398 742 LINEMLGS----T-DENEPLQAMMKDPFGNYVVQKVLETCDDQ--------------------SLELILSRIRVHLNVLK 796 (823)
Q Consensus 742 Ii~eLl~~----~-~~~e~L~~La~D~~GnyVIqklL~~~ddt--------------------~rk~Il~eLk~~L~~La 796 (823)
|++||+.. + .+++.+..|++|+|||||||++|+++++. .++.|+.++++|+..|+
T Consensus 308 ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~ 387 (412)
T 3k62_A 308 MMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLS 387 (412)
T ss_dssp HHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 99999853 1 12467999999999999999999999775 14789999999999999
Q ss_pred hCCCchHHHHHHHHHHHc
Q 003398 797 KYTYGKHIVSRIEKLIAT 814 (823)
Q Consensus 797 ~~~yGk~Vl~~lek~~~~ 814 (823)
+++|||+|+++++++...
T Consensus 388 ~~~~Gk~i~~~l~~~~~~ 405 (412)
T 3k62_A 388 RFSSGKKMIETLANLRST 405 (412)
T ss_dssp TSHHHHHHHHHHHHHHC-
T ss_pred cCCCccHHHHHHHHhhcc
Confidence 999999999999998654
No 4
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=5.6e-59 Score=519.21 Aligned_cols=324 Identities=25% Similarity=0.501 Sum_probs=294.2
Q ss_pred cccHhhh--HHHHHHHhhCCCcCHHHHHHhhhCCHHH-HHHHHHHHh---HhHHHhhccccccchhhHhhhcCCHHHHHH
Q 003398 487 SFELSDI--VDHVVEFSTDQYGSRFIQQKLEAATAEE-KTRIFPEII---PHARTLMTDVFGNYVIQKFFEHGTESQRAQ 560 (823)
Q Consensus 487 ~~~L~eI--~GkiveLA~Dq~GSRvLQ~lLe~~s~Eq-r~~If~EL~---~~~~~L~tD~~GshVIQKLLe~~s~eqr~~ 560 (823)
.+.|.++ +|+++++|+||+||||||++|+.+++++ +..||++|. +++.+||+|+||||||||+|++++++++..
T Consensus 10 ~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~ 89 (382)
T 3v71_A 10 FISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRE 89 (382)
T ss_dssp -CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHH
T ss_pred cCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHH
Confidence 3567788 6999999999999999999999998654 789999985 789999999999999999999999999999
Q ss_pred HHHH-HhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhh-hHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhh
Q 003398 561 LASQ-LTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDG-SVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFY 638 (823)
Q Consensus 561 Li~~-L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~-~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~ 638 (823)
|+.. +.+++..|+.|+|||||||++++.++.+++..|++||.+ ++..|++|++||||||+||++.+++.+++|++.+.
T Consensus 90 li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 90 LLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHh
Confidence 9887 689999999999999999999999999999999999998 89999999999999999999999999999999997
Q ss_pred --hhhhHhhcCcCcchhHHHHHhhCCCHHH----------HHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCc--hhHH
Q 003398 639 --GQVVALSTHPYGCRVIQRVLEHCDDANT----------QQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKP--HERT 704 (823)
Q Consensus 639 --g~l~~Ls~hk~Gs~VVQklLe~~~~~~~----------~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~--~~r~ 704 (823)
+++.++++|+|||+|||+||+++.++++ ...|+++|..++..|++|+|||||||++|+++.+ +.|.
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~ 249 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRD 249 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHH
T ss_pred cccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHH
Confidence 6999999999999999999999876431 2346677778889999999999999999999874 4688
Q ss_pred HHHHH-hHHhHHhhcCCchHHHHHHHHHhhCCHHHHHHHHHHHhcC-----CCCchhHHHhhcCcchHHHHHHHHhcCCh
Q 003398 705 TVITQ-LAGQIVRMSQQKFASNVVEKCLTFGSPEERQLLINEMLGS-----TDENEPLQAMMKDPFGNYVVQKVLETCDD 778 (823)
Q Consensus 705 ~Ii~~-L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~-----~~~~e~L~~La~D~~GnyVIqklL~~~dd 778 (823)
.|++. |.++++.|+++||||+|||+||++++++.|+.|+++|+.. ..+++.|..|++|+|||||||++|+.+++
T Consensus 250 ~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~ 329 (382)
T 3v71_A 250 TIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTA 329 (382)
T ss_dssp HHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHccc
Confidence 99975 9999999999999999999999999999999999999862 11246899999999999999999999987
Q ss_pred hH-------------------HHHHHHHHHHhHHHHhhCCCchHHHHHHHH
Q 003398 779 QS-------------------LELILSRIRVHLNVLKKYTYGKHIVSRIEK 810 (823)
Q Consensus 779 t~-------------------rk~Il~eLk~~L~~La~~~yGk~Vl~~lek 810 (823)
.. ++.|++++++|+..|+.++|||||+++++|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 330 ALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp HCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred ccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHh
Confidence 31 578999999999999999999999999987
No 5
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=4e-58 Score=501.81 Aligned_cols=319 Identities=29% Similarity=0.498 Sum_probs=295.7
Q ss_pred cccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHh
Q 003398 487 SFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLT 566 (823)
Q Consensus 487 ~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~ 566 (823)
...+++++|+++++|+||+|||+||++|+++++++++.||+|+.+++.+||+|+||||||||+|++++++++..|++.+.
T Consensus 5 ~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~ 84 (333)
T 3bwt_A 5 DAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISS 84 (333)
T ss_dssp TCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHG
T ss_pred cCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccchHHHHhhhhcCh-HHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHhh
Q 003398 567 GHVLRLSLQMYGCRVIQKALEVVHV-DQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALS 645 (823)
Q Consensus 567 g~~~~Ls~h~yGSrVVQklLe~~~~-eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls 645 (823)
+++.+|+.|+|||||||++++.+.. +++..+++||.+++..|++|++||||||+||+.++++.+++|++.+.+++..|+
T Consensus 85 ~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~ 164 (333)
T 3bwt_A 85 PHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIA 164 (333)
T ss_dssp GGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHH
T ss_pred hHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999865 456678899999999999999999999999999999999999999999999999
Q ss_pred cCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchh----HHHHHHHhHHhHHhhcCCc
Q 003398 646 THPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHE----RTTVITQLAGQIVRMSQQK 721 (823)
Q Consensus 646 ~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~----r~~Ii~~L~g~iv~Ls~~K 721 (823)
.|++||+|||+|++++. ++.+..|++++.+++..|++|+|||||||++|+.++++. ++.|++.+++++.+|+++|
T Consensus 165 ~~~~Gs~Vvq~~l~~~~-~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k 243 (333)
T 3bwt_A 165 THRHGCCVLQRCLDHGT-TEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHK 243 (333)
T ss_dssp TSTTHHHHHHHHHHHCC-HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTST
T ss_pred cCchhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHccc
Confidence 99999999999999985 556778999999999999999999999999999876543 6899999999999999999
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChh---HHHHHHHHHHHhH-HHHhh
Q 003398 722 FASNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQ---SLELILSRIRVHL-NVLKK 797 (823)
Q Consensus 722 ~GS~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt---~rk~Il~eLk~~L-~~La~ 797 (823)
|||+|||+||+.++ .++.|+.+++... +.+.+..|+.|+|||||||++|+.++++ .++.|+++|++++ .+|+.
T Consensus 244 ~gs~Vvek~l~~~~--~~~~ii~ell~~~-~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~ 320 (333)
T 3bwt_A 244 FGSNVIEKILKTAI--VSEPMILEILNNG-GETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRN 320 (333)
T ss_dssp THHHHHHHHHTSHH--HHHHHHHHHHHTT-HHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGG
T ss_pred HHHHHHHHHHcccc--hhHHHHHHHHhcc-CchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcC
Confidence 99999999999754 4678999998532 1367999999999999999999999876 4799999999998 89999
Q ss_pred CCCchHHHHHHH
Q 003398 798 YTYGKHIVSRIE 809 (823)
Q Consensus 798 ~~yGk~Vl~~le 809 (823)
++|||||+++++
T Consensus 321 ~~~G~~i~~~l~ 332 (333)
T 3bwt_A 321 TPHGKRIIGMLH 332 (333)
T ss_dssp SHHHHHHHTTSC
T ss_pred CCCHHHHHHHhc
Confidence 999999988764
No 6
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=4.8e-43 Score=386.12 Aligned_cols=265 Identities=26% Similarity=0.456 Sum_probs=244.3
Q ss_pred chhhhhHHHHHh---hccccccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccch
Q 003398 469 EGRLSSSLLDEF---KTNKTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYV 545 (823)
Q Consensus 469 ~~~~~s~LLeef---~s~e~k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshV 545 (823)
.+.+.+.+++.+ .+.+.+..+++++.|+++++++|++||||||++|+.++.+++..|++|+.+++.+|++|+|||||
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~V 148 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHV 148 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHH
Confidence 344555555543 33455666778889999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhC
Q 003398 546 IQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECI 625 (823)
Q Consensus 546 IQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~ 625 (823)
|||+|++++++++..|++.+.+++.+|+.|+|||+|||++++.++++++..|+++|.+++..|++|++||||||++|+.+
T Consensus 149 iQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~ 228 (351)
T 3gvo_A 149 VQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHG 228 (351)
T ss_dssp HHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHH-------HHHHHhcCCCccHHHHHHHhcC
Q 003398 626 PQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQ-------HVCNLAQDQYGNYVIQHVLEHG 698 (823)
Q Consensus 626 ~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~-------~l~~La~DqyGNyVVQ~lLe~~ 698 (823)
+++.+.+|++.+.+++..|++|+|||+|||+||+++. +..+..|++++.. .+..|++|+|||||||++|+.+
T Consensus 229 ~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~-~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~ 307 (351)
T 3gvo_A 229 RPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS-RAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMA 307 (351)
T ss_dssp CHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCC-HHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhC
Confidence 9999999999999999999999999999999999986 4556779999986 7999999999999999999999
Q ss_pred CchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhC
Q 003398 699 KPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFG 734 (823)
Q Consensus 699 ~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a 734 (823)
++++|+.|++.+++++..|+.++||++|++++-++.
T Consensus 308 ~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~~ 343 (351)
T 3gvo_A 308 EPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYY 343 (351)
T ss_dssp CHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999999999999999999999999999999987754
No 7
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2.2e-40 Score=361.68 Aligned_cols=277 Identities=21% Similarity=0.334 Sum_probs=137.7
Q ss_pred HHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhh
Q 003398 525 IFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGS 604 (823)
Q Consensus 525 If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~ 604 (823)
+++++.+++.+|++|++|+++||++|++++++++..|++++.+++.+|+.|+||++|||++++.++.+++..|++++.++
T Consensus 7 ~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~ 86 (333)
T 3bwt_A 7 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPH 86 (333)
T ss_dssp CGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhcccCChHHHHHHHhCC-hhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHHHhc
Q 003398 605 VMKCVHDQNGNHVIQKCIECIP-QDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCNLAQ 683 (823)
Q Consensus 605 i~~LvkDq~GnhVIQk~Le~~~-~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~La~ 683 (823)
+.+++.|++|++|||+++++.+ ++.+..|++.+.+++..|+.|++|++|||+||++.. ++.++.|++.+.+++..|++
T Consensus 87 ~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~-~~~~~~i~~~l~~~~~~l~~ 165 (333)
T 3bwt_A 87 FVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLK-PENFQFIFDAISDSCIDIAT 165 (333)
T ss_dssp HHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHHSHHHHHT
T ss_pred HHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhc
Confidence 5555555555555555555442 233344445555555555555555555555555432 33334445555555555555
Q ss_pred CCCccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhCCHHH----HHHHHHHHhcCCCCchhHHHh
Q 003398 684 DQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEE----RQLLINEMLGSTDENEPLQAM 759 (823)
Q Consensus 684 DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~----Rk~Ii~eLl~~~~~~e~L~~L 759 (823)
|+||+.|||++|+++++++++.|++.+.+++..|+.+.||.+||+++++.++++. ++.|++.| .+++.+|
T Consensus 166 ~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l------~~~~~~L 239 (333)
T 3bwt_A 166 HRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLL------KPRAIEL 239 (333)
T ss_dssp STTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH------GGGHHHH
T ss_pred CchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHH------HHHHHHH
Confidence 5555555555555555555555555555555555555555555555555443332 34444444 2445555
Q ss_pred hcCcchHHHHHHHHhcCChhHHHHHHHHHH-----HhHHHHhhCCCchHHHHHHHHHHH
Q 003398 760 MKDPFGNYVVQKVLETCDDQSLELILSRIR-----VHLNVLKKYTYGKHIVSRIEKLIA 813 (823)
Q Consensus 760 a~D~~GnyVIqklL~~~ddt~rk~Il~eLk-----~~L~~La~~~yGk~Vl~~lek~~~ 813 (823)
+.|+||++||+++|+..+ .++.++.++. +++..|+.+.||.+| |.+++.
T Consensus 240 s~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyV---iq~~l~ 293 (333)
T 3bwt_A 240 SIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYV---LQTALD 293 (333)
T ss_dssp HTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHH---HHHHHH
T ss_pred HcccHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHH---HHHHHH
Confidence 555555555555554332 2334444432 344555555555555 444444
No 8
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=3.6e-39 Score=357.47 Aligned_cols=300 Identities=20% Similarity=0.330 Sum_probs=276.2
Q ss_pred CcCHHHHHHhhhCC--HHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHH
Q 003398 505 YGSRFIQQKLEAAT--AEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVI 582 (823)
Q Consensus 505 ~GSRvLQ~lLe~~s--~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVV 582 (823)
+-|++|+++....+ ..++...++++.+++.+|++|++|+++||++|++++++++..|++++.+++.+|+.|+||+|||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 45888988887763 4789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCC
Q 003398 583 QKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCD 662 (823)
Q Consensus 583 QklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~ 662 (823)
|+++++++.+++..|++++.+++.+|..|++|++|||++++.+.++.+..|++.+.+++..|+.|++|++|||++|+.+.
T Consensus 83 Qkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~ 162 (369)
T 3k49_A 83 QKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIP 162 (369)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCCchhHHHHHHHhHHhHHhhcCCchHHHHHHHHHhhCCHHH----
Q 003398 663 DANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGKPHERTTVITQLAGQIVRMSQQKFASNVVEKCLTFGSPEE---- 738 (823)
Q Consensus 663 ~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~g~iv~Ls~~K~GS~VVEkcL~~a~~k~---- 738 (823)
++.+..|++.+.+++..|+.++||+.|||++|+++++++++.|++.|.+++..|+.+.||.+||+++++.++++.
T Consensus 163 -~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~ 241 (369)
T 3k49_A 163 -IEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMV 241 (369)
T ss_dssp -GGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhH
Confidence 455678999999999999999999999999999999999999999999999999999999999999999997753
Q ss_pred --HHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHH-------------hHHHHhhCCCchH
Q 003398 739 --RQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRV-------------HLNVLKKYTYGKH 803 (823)
Q Consensus 739 --Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~-------------~L~~La~~~yGk~ 803 (823)
++.|++.|. +++.+|++|+||+.||+++|+.++++.|+.|+++|.. .+..|+.+.||..
T Consensus 242 ~~~~~i~~~l~------~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNy 315 (369)
T 3k49_A 242 DIKQEIIETVA------NNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANY 315 (369)
T ss_dssp HHHHHHHHHHH------TTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHH
T ss_pred hHHHHHHHHHH------HHHHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHH
Confidence 678999987 4599999999999999999999999999999999853 4778999999999
Q ss_pred HHHHHHHH
Q 003398 804 IVSRIEKL 811 (823)
Q Consensus 804 Vl~~lek~ 811 (823)
|+.++-..
T Consensus 316 Viq~~l~~ 323 (369)
T 3k49_A 316 VIQKLVNV 323 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98777554
No 9
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=5.7e-38 Score=352.87 Aligned_cols=266 Identities=17% Similarity=0.250 Sum_probs=232.3
Q ss_pred cchhhhhHHHHHhh---cc-------ccccccHhhhHHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHHH--hHhHHH
Q 003398 468 MEGRLSSSLLDEFK---TN-------KTRSFELSDIVDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPEI--IPHART 535 (823)
Q Consensus 468 ~~~~~~s~LLeef~---s~-------e~k~~~L~eI~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL--~~~~~~ 535 (823)
+.+.|.+.+++.+. +. +.+...++.+.|++++++.|++|||+||++|+.++.+++..|++|+ .+++..
T Consensus 75 ~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~ 154 (412)
T 3k62_A 75 STNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIA 154 (412)
T ss_dssp HTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHH
T ss_pred HhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHH
Confidence 45566666666533 33 4566678899999999999999999999999999999999999999 799999
Q ss_pred hhccccccchhhHhhhcCCHHHHHHHHHHHh--hhHHHhhhccccchHHHHhhhhcCh------------HHHH----HH
Q 003398 536 LMTDVFGNYVIQKFFEHGTESQRAQLASQLT--GHVLRLSLQMYGCRVIQKALEVVHV------------DQQT----QM 597 (823)
Q Consensus 536 L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~--g~~~~Ls~h~yGSrVVQklLe~~~~------------eq~~----~L 597 (823)
|++|+||||||||+|++++++++..|++.+. +++.+|+.|+|||+|||++|+.+.. +++. .|
T Consensus 155 L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L 234 (412)
T 3k62_A 155 ICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRL 234 (412)
T ss_dssp HHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999998 6999999999999999999999873 3454 35
Q ss_pred HHhhhhhHHHHhhcccCChHHHHHHHhCChhh-HHHHHH-hhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHH
Q 003398 598 VAELDGSVMKCVHDQNGNHVIQKCIECIPQDR-IQFIIS-SFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIM 675 (823)
Q Consensus 598 l~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~-~~~Ii~-~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl 675 (823)
+.++..++..|+.|+|||||||++|+.+.++. +..|++ .+.+++++||+|+|||+|||+||+++. ++.+..|++||.
T Consensus 235 ~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~-~~~r~~ii~ei~ 313 (412)
T 3k62_A 235 MTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAP-LELLAEMMDEIF 313 (412)
T ss_dssp HHHHHHTHHHHHHSTTTHHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccccHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 66777888899999999999999999987654 677776 699999999999999999999999975 556778999998
Q ss_pred H-----------HHHHHhcCCCccHHHHHHHhcCCch--------------------hHHHHHHHhHHhHHhhcCCchHH
Q 003398 676 Q-----------HVCNLAQDQYGNYVIQHVLEHGKPH--------------------ERTTVITQLAGQIVRMSQQKFAS 724 (823)
Q Consensus 676 ~-----------~l~~La~DqyGNyVVQ~lLe~~~~~--------------------~r~~Ii~~L~g~iv~Ls~~K~GS 724 (823)
. .+..|++|+|||||||++|+.+++. .++.|+..++++...|...++|+
T Consensus 314 ~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk 393 (412)
T 3k62_A 314 DGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGK 393 (412)
T ss_dssp HSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHH
T ss_pred hhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 6 4889999999999999999887432 24689999999999999999999
Q ss_pred HHHHHHHhhC
Q 003398 725 NVVEKCLTFG 734 (823)
Q Consensus 725 ~VVEkcL~~a 734 (823)
+|++++-+..
T Consensus 394 ~i~~~l~~~~ 403 (412)
T 3k62_A 394 KMIETLANLR 403 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 10
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.1e-35 Score=329.21 Aligned_cols=300 Identities=17% Similarity=0.259 Sum_probs=262.8
Q ss_pred chhhhhHHHHHhhcc---cc-ccccHhhh---HHHHHHHhhCCCcCHHHHHHhhhCCHHHHHHHHHH-HhHhHHHhhccc
Q 003398 469 EGRLSSSLLDEFKTN---KT-RSFELSDI---VDHVVEFSTDQYGSRFIQQKLEAATAEEKTRIFPE-IIPHARTLMTDV 540 (823)
Q Consensus 469 ~~~~~s~LLeef~s~---e~-k~~~L~eI---~GkiveLA~Dq~GSRvLQ~lLe~~s~Eqr~~If~E-L~~~~~~L~tD~ 540 (823)
.+...+++++..... ++ +...++++ ..++++|++|++|++++|++|++++++++..++.+ +.+++..|+.|.
T Consensus 27 ~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~ 106 (382)
T 3v71_A 27 IDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDK 106 (382)
T ss_dssp HSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTST
T ss_pred cCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCc
Confidence 567788999875442 22 34455555 47899999999999999999999999999999988 589999999999
Q ss_pred cccchhhHhhhcCCHHHHHHHHHHHhh-hHHHhhhccccchHHHHhhhhcChHHHHHHHHhhh--hhHHHHhhcccCChH
Q 003398 541 FGNYVIQKFFEHGTESQRAQLASQLTG-HVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELD--GSVMKCVHDQNGNHV 617 (823)
Q Consensus 541 ~GshVIQKLLe~~s~eqr~~Li~~L~g-~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~--~~i~~LvkDq~GnhV 617 (823)
||++||||++++++.+++..|++++.+ ++..|+.|.+|+||||++|+.++++.+..|++++. +++..+..|++|++|
T Consensus 107 ~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc~V 186 (382)
T 3v71_A 107 FACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRL 186 (382)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTHHHH
T ss_pred cchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchhhHH
Confidence 999999999999999999999999998 89999999999999999999999999999999997 689999999999999
Q ss_pred HHHHHHhCChhh-----------HHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCC-HHHHHHHHHH-HHHHHHHHhcC
Q 003398 618 IQKCIECIPQDR-----------IQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDD-ANTQQIIMDE-IMQHVCNLAQD 684 (823)
Q Consensus 618 IQk~Le~~~~e~-----------~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~-~~~~~~Il~e-Ll~~l~~La~D 684 (823)
||+||+.++++. ...|++.+.+++..|+.++||++|||++|+++.. +..+..|+++ +.+++..|+++
T Consensus 187 lQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~Ls~~ 266 (382)
T 3v71_A 187 VQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQD 266 (382)
T ss_dssp HHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHHTTS
T ss_pred HHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999876542 2346677888899999999999999999999765 3456778875 88999999999
Q ss_pred CCccHHHHHHHhcCCchhHHHHHHHhHH-----------hHHhhcCCchHHHHHHHHHhhCCHH----------------
Q 003398 685 QYGNYVIQHVLEHGKPHERTTVITQLAG-----------QIVRMSQQKFASNVVEKCLTFGSPE---------------- 737 (823)
Q Consensus 685 qyGNyVVQ~lLe~~~~~~r~~Ii~~L~g-----------~iv~Ls~~K~GS~VVEkcL~~a~~k---------------- 737 (823)
+||++||+++|++++++.|..|++.|.+ .+..|+.+.||..||+++|..+++.
T Consensus 267 k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~~~ 346 (382)
T 3v71_A 267 KYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAILLL 346 (382)
T ss_dssp TTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTHHH
T ss_pred chHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHcccccccchhcccchhHHhh
Confidence 9999999999999999999999999874 6889999999999999999998652
Q ss_pred ---HHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHh
Q 003398 738 ---ERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLE 774 (823)
Q Consensus 738 ---~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~ 774 (823)
.++.|+..+. +++..|...+||.+||.++..
T Consensus 347 ~~~~~~~l~~~i~------~~~~~l~~~~~Gk~i~~~l~~ 380 (382)
T 3v71_A 347 YSGWYEKMKQRVL------QHASRLERFSSGKKIIDSVMR 380 (382)
T ss_dssp HHHHHHHHHHHHH------HHHHHHTTSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH------HHHHHhhhCCchHHHHHHHHh
Confidence 2467777774 779999999999999998764
No 11
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=72.09 E-value=21 Score=40.52 Aligned_cols=172 Identities=16% Similarity=0.187 Sum_probs=92.5
Q ss_pred cccccccHhhhHHHHHHHhhCCCcCHH---HHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHH
Q 003398 483 NKTRSFELSDIVDHVVEFSTDQYGSRF---IQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRA 559 (823)
Q Consensus 483 ~e~k~~~L~eI~GkiveLA~Dq~GSRv---LQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~ 559 (823)
++...+....|++ +..+|+|.+-+|+ |=++|......++..|-+.+...+..=.....+....| |..+.+..|.
T Consensus 76 Ded~~IR~qaik~-Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~--i~~~~e~~Re 152 (507)
T 3u0r_A 76 DEDVSIRRQAIKE-LPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ--ILQGEDIVRE 152 (507)
T ss_dssp CSSHHHHHHHHHH-GGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHHSCHHHHH
T ss_pred cccHHHHHHHHHh-hHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHH--HcccchHHHH
Confidence 3333344444444 6778888777775 55677777778887777776655443222222322222 2225678889
Q ss_pred HHHHHHhhhHHHhhhccccchH-------HHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCCh-HHHHHHHh-------
Q 003398 560 QLASQLTGHVLRLSLQMYGCRV-------IQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNH-VIQKCIEC------- 624 (823)
Q Consensus 560 ~Li~~L~g~~~~Ls~h~yGSrV-------VQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~Gnh-VIQk~Le~------- 624 (823)
.+++.|..++..|-....+..+ +.++++-++.++...+++-|. -..++.+..|.- +++-+.+.
T Consensus 153 r~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~--~lkl~~t~~g~qeLv~ii~eQa~L~~~f 230 (507)
T 3u0r_A 153 RAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILS--GLKSLQTVSGRQQLVELVAEQADLEQTF 230 (507)
T ss_dssp HHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH--TSGGGSSHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHH--hcccccCchHHHHHHHHHHHHHhccCCC
Confidence 9999998888877665554333 445555555555444333221 011222221211 11111111
Q ss_pred --CChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHh
Q 003398 625 --IPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLE 659 (823)
Q Consensus 625 --~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe 659 (823)
.+.+....++.++...+.-.+....++..+.-+.+
T Consensus 231 ~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~ 267 (507)
T 3u0r_A 231 NPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCE 267 (507)
T ss_dssp CSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 35667777777777666666665555555544443
No 12
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=68.24 E-value=1.3e+02 Score=32.26 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=30.4
Q ss_pred hhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhh-cChHHHHHHHHhhhh
Q 003398 550 FEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEV-VHVDQQTQMVAELDG 603 (823)
Q Consensus 550 Le~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~-~~~eq~~~Ll~EL~~ 603 (823)
+...++++...++++|...+..-..-..|+..++.+++. +.++.-..|++++.+
T Consensus 49 l~~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~~~A~~ll~~i~~ 103 (329)
T 3hjl_A 49 LESVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPPTLAEKFRGILEL 103 (329)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445567777777777766655544332233556666643 455555556665543
No 13
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=66.55 E-value=1.3e+02 Score=31.40 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=63.5
Q ss_pred chhHHHHHhhCCCHH-HHHHHHHHHHHHHHHHhcCCCccHHHHHHHh---cCCchhHHHHHHHhHHhHHhhcCC-chHH-
Q 003398 651 CRVIQRVLEHCDDAN-TQQIIMDEIMQHVCNLAQDQYGNYVIQHVLE---HGKPHERTTVITQLAGQIVRMSQQ-KFAS- 724 (823)
Q Consensus 651 s~VVQklLe~~~~~~-~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe---~~~~~~r~~Ii~~L~g~iv~Ls~~-K~GS- 724 (823)
+.++-.+++.+++.. ..+.-+.+++..+..++ --++|+..+++ +.+...|.+.++.+..-+..--.. .-+-
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~ 207 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLS 207 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 455666666665432 22223333444444332 12345555544 344566666666655433332211 1123
Q ss_pred --HHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHH
Q 003398 725 --NVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRV 790 (823)
Q Consensus 725 --~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~ 790 (823)
..|.+++.-.+...|+.=+..+.. +...+ |.-|. +.+-...++++..|-++++.
T Consensus 208 ~~~~ia~ll~D~d~~VR~aAl~~lve-------~y~~~----Gd~v~-k~lg~L~~~~~~~l~er~~r 263 (266)
T 2of3_A 208 VEKTVAPFVGDKDVNVRNAAINVLVA-------CFKFE----GDQMW-KAAGRMADKDKSLVEERIKR 263 (266)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHH-------HHHHH----TTHHH-HHHCCCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHH-------HHHHh----hHHHH-HHHhcCCHHHHHHHHHHHhh
Confidence 346666666777777777766641 22333 33333 34455677778888777764
No 14
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.95 E-value=83 Score=30.81 Aligned_cols=185 Identities=9% Similarity=-0.005 Sum_probs=92.2
Q ss_pred cccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHH-HhhcccCChH
Q 003398 539 DVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMK-CVHDQNGNHV 617 (823)
Q Consensus 539 D~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~-LvkDq~GnhV 617 (823)
+..|.-.+...+..+..+..+.|++.= ..--..+..|...+..+......+....+++. -.. -..+..|...
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~ 108 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHG---ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK----GADVNECDFYGFTA 108 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCBCTTCCBH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCcccCCH
Confidence 566677777777777766655555431 00112345565566555555544433333321 111 1346677777
Q ss_pred HHHHHHhCChhhHHHHHHhhhhhhh-------HhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHH--HHHHhcCCCcc
Q 003398 618 IQKCIECIPQDRIQFIISSFYGQVV-------ALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQH--VCNLAQDQYGN 688 (823)
Q Consensus 618 IQk~Le~~~~e~~~~Ii~~f~g~l~-------~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~--l~~La~DqyGN 688 (823)
+...+.....+..+.+++.-..--. .-..+..|...+........ . .+++.+++. ...-..+..|.
T Consensus 109 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~----~~v~~Ll~~~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-V----EVLKILLDEMGADVNACDNMGR 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC-H----HHHHHHHHTSCCCTTCCCTTSC
T ss_pred HHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC-H----HHHHHHHHhcCCCCCccCCCCC
Confidence 7777777776666666544211000 00013444444444444321 1 233333321 11123466777
Q ss_pred HHHHHHHhcCCchhHHHHHHHhHHhHHhh-cCCchHHHHHHHHHhhCC
Q 003398 689 YVIQHVLEHGKPHERTTVITQLAGQIVRM-SQQKFASNVVEKCLTFGS 735 (823)
Q Consensus 689 yVVQ~lLe~~~~~~r~~Ii~~L~g~iv~L-s~~K~GS~VVEkcL~~a~ 735 (823)
..+...+..+......++++.|...=..+ ..++.|.-.+..+...+.
T Consensus 184 t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred CHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 77877777776555566666665543222 234555555555555544
No 15
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.80 E-value=95 Score=29.76 Aligned_cols=131 Identities=9% Similarity=0.033 Sum_probs=69.5
Q ss_pred hCCCcCHHHHHHhhhCCHHHHHHHHHHHhHh-HHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccch
Q 003398 502 TDQYGSRFIQQKLEAATAEEKTRIFPEIIPH-ARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCR 580 (823)
Q Consensus 502 ~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~-~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSr 580 (823)
.|.+|.-.|....+.+..+....+++.+... ...-..|..|.-.+...+..+..+..+.|++.= ...-..+..|..
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG---ASPMALDRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC---CCccccCCCCCC
Confidence 5667777777778888877777776654322 112234667777777777777766655555421 011123455665
Q ss_pred HHHHhhhhcChHHHHHHHHhhhhh-HHHHhhcccCChHHHHHHHhCChhhHHHHHH
Q 003398 581 VIQKALEVVHVDQQTQMVAELDGS-VMKCVHDQNGNHVIQKCIECIPQDRIQFIIS 635 (823)
Q Consensus 581 VVQklLe~~~~eq~~~Ll~EL~~~-i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~ 635 (823)
.+..+......+....+++..... +.--..+..|...+..++.....+..+.+++
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 137 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence 666665555444333333322110 0111345566666666666655555555544
No 16
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=50.98 E-value=2.6e+02 Score=30.00 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=28.0
Q ss_pred CcchHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhh
Q 003398 762 DPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKK 797 (823)
Q Consensus 762 D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~ 797 (823)
..-|.-.+-.+|...+....+.|++.|..+=.+|+.
T Consensus 196 ~~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpela~ 231 (329)
T 3hjl_A 196 KLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEE 231 (329)
T ss_dssp CCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHH
T ss_pred ccccHHHHHHHHhcCChHHHHHHHHHHHHhCHHHHH
Confidence 345788899999999988888888888766555543
No 17
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=49.06 E-value=77 Score=32.46 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=9.5
Q ss_pred HHHHHHHhCChhhHHHHHH
Q 003398 617 VIQKCIECIPQDRIQFIIS 635 (823)
Q Consensus 617 VIQk~Le~~~~e~~~~Ii~ 635 (823)
.++.++...+.+.+..+..
T Consensus 110 ~~~~ll~~l~~~~~~~i~~ 128 (278)
T 2yvy_A 110 YFQRLKDLLDPRTRAEVEA 128 (278)
T ss_dssp HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4455555555555444433
No 18
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=43.94 E-value=1e+02 Score=30.49 Aligned_cols=193 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred hCCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHH-----HhhccccccchhhHhhhc---CCHHHHHHHHHHHhh--hH--
Q 003398 502 TDQYGSRFIQQKLEAATAEEKTRIFPEIIPHAR-----TLMTDVFGNYVIQKFFEH---GTESQRAQLASQLTG--HV-- 569 (823)
Q Consensus 502 ~Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~-----~L~tD~~GshVIQKLLe~---~s~eqr~~Li~~L~g--~~-- 569 (823)
.|..|...|-...+.+..+....+++.....-. ....|..|.-.+...+.+ +..+..+.|++.-.. .+
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 344455555555555555555545443322111 123466666666665544 445555555443110 11
Q ss_pred -HHh---hhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHH-hhcc--------------cCChHHHHHHHhCChhhH
Q 003398 570 -LRL---SLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKC-VHDQ--------------NGNHVIQKCIECIPQDRI 630 (823)
Q Consensus 570 -~~L---s~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~L-vkDq--------------~GnhVIQk~Le~~~~e~~ 630 (823)
... ..+..|.-.+-.+......+....|++. -..+ ..+. +|...+.........+..
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN----GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC----CCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 111 0234566566555555544433333332 1111 1222 577777777776666666
Q ss_pred HHHHHhh-hhhhhHhhcCcCcchhHHHHHhhCCCHHHH----HHHHHHHHHHHHHH--------hcCCCccHHHHHHHhc
Q 003398 631 QFIISSF-YGQVVALSTHPYGCRVIQRVLEHCDDANTQ----QIIMDEIMQHVCNL--------AQDQYGNYVIQHVLEH 697 (823)
Q Consensus 631 ~~Ii~~f-~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~----~~Il~eLl~~l~~L--------a~DqyGNyVVQ~lLe~ 697 (823)
+.|++.. .+.-+ -..+..|.-.+............. ..+++.|++.-..+ ..|..|...+......
T Consensus 165 ~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 165 KFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 6666521 11111 123455666665555543221111 22334444433333 3566676666666655
Q ss_pred CC
Q 003398 698 GK 699 (823)
Q Consensus 698 ~~ 699 (823)
+.
T Consensus 244 g~ 245 (273)
T 2pnn_A 244 GK 245 (273)
T ss_dssp TC
T ss_pred Ch
Confidence 54
No 19
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=37.17 E-value=2.8e+02 Score=28.98 Aligned_cols=66 Identities=14% Similarity=0.277 Sum_probs=33.7
Q ss_pred chhHHHHHh-hCCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhcCC---chhHHHHHHHhHHhHHhhcCC
Q 003398 651 CRVIQRVLE-HCDDANTQQIIMDEIMQHVCNLAQDQYGNYVIQHVLEHGK---PHERTTVITQLAGQIVRMSQQ 720 (823)
Q Consensus 651 s~VVQklLe-~~~~~~~~~~Il~eLl~~l~~La~DqyGNyVVQ~lLe~~~---~~~r~~Ii~~L~g~iv~Ls~~ 720 (823)
+-+|-++++ .|-+++.+..++..+. ++.-+..--.|+|.+|+... ++....++..+.+.-..++.+
T Consensus 145 ~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skS 214 (264)
T 2ilr_A 145 TELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEETFLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTS 214 (264)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCS
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcc
Confidence 446666666 5555665554554443 33444444458888888653 344445555555555555544
No 20
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=33.57 E-value=2.3e+02 Score=27.46 Aligned_cols=190 Identities=12% Similarity=0.094 Sum_probs=90.1
Q ss_pred HHHHhhhCCHHHHHHHHHHHhHhHHHh-----hccccccchhhHhhhc---CCHHHHHHHHHHHhhh--H---HHh---h
Q 003398 510 IQQKLEAATAEEKTRIFPEIIPHARTL-----MTDVFGNYVIQKFFEH---GTESQRAQLASQLTGH--V---LRL---S 573 (823)
Q Consensus 510 LQ~lLe~~s~Eqr~~If~EL~~~~~~L-----~tD~~GshVIQKLLe~---~s~eqr~~Li~~L~g~--~---~~L---s 573 (823)
|-.....+..+....+++.+..+-..+ ..|..|.-.+...... +..+..+.|++.-... + ... .
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 333444455544444444433322222 2477777777766666 5555555555431100 0 000 0
Q ss_pred hccccchHHHHhhhhcChHHHHHHHHhhhhhHHHH-hhcc-------------cCChHHHHHHHhCChhhHHHHHHhhhh
Q 003398 574 LQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKC-VHDQ-------------NGNHVIQKCIECIPQDRIQFIISSFYG 639 (823)
Q Consensus 574 ~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~L-vkDq-------------~GnhVIQk~Le~~~~e~~~~Ii~~f~g 639 (823)
.+..|.-.+..+......+....|++. -..+ ..+. +|...+.........+..+.+++....
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVEN----GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHc----CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 124566666666555544433333332 1111 1222 377777777777777776666652100
Q ss_pred hhhHhhcCcCcchhHHHHHhhC-CCHHH---HHHHHHHHHHHHHHH--------hcCCCccHHHHHHHhcCCchhH
Q 003398 640 QVVALSTHPYGCRVIQRVLEHC-DDANT---QQIIMDEIMQHVCNL--------AQDQYGNYVIQHVLEHGKPHER 703 (823)
Q Consensus 640 ~l~~Ls~hk~Gs~VVQklLe~~-~~~~~---~~~Il~eLl~~l~~L--------a~DqyGNyVVQ~lLe~~~~~~r 703 (823)
..---..+..|.-.+....... ...+. ...+++.+++.-..+ +.|..|...+......+..+..
T Consensus 162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 237 (256)
T 2etb_A 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237 (256)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence 0001134556666665555422 12211 112444444443333 5677787777777776654333
No 21
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=32.74 E-value=2.3e+02 Score=26.67 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=59.9
Q ss_pred CCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHH
Q 003398 503 DQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVI 582 (823)
Q Consensus 503 Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVV 582 (823)
|..|.-.|......+..+..+.+++.- ...-..|..|...+...+..+..+..+.|++.-... .-..+..|...+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L 96 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPL 96 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHH
Confidence 445555555555566555444444320 111234666777777667666666555555421101 112244555555
Q ss_pred HHhhhhcChHHHHHHHHhhhhhHHH-HhhcccCChHHHHHHHhCChhhHHHHHH
Q 003398 583 QKALEVVHVDQQTQMVAELDGSVMK-CVHDQNGNHVIQKCIECIPQDRIQFIIS 635 (823)
Q Consensus 583 QklLe~~~~eq~~~Ll~EL~~~i~~-LvkDq~GnhVIQk~Le~~~~e~~~~Ii~ 635 (823)
..+......+....+++ .-.. -..|..|...+..++.....+..+.+++
T Consensus 97 ~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 146 (223)
T 2f8y_A 97 ILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146 (223)
T ss_dssp HHHHHHTCHHHHHHHHH----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHH----cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 55554444333222222 1111 1345566666666666666555555554
No 22
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=31.51 E-value=6.3e+02 Score=28.75 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=54.4
Q ss_pred CCchhHHHHHHHhHHhHHhhcCCchH-------HHHHHHHHhhCCHHHHHHHHHHHhcCCCCchhHHHhhcCcchHHHHH
Q 003398 698 GKPHERTTVITQLAGQIVRMSQQKFA-------SNVVEKCLTFGSPEERQLLINEMLGSTDENEPLQAMMKDPFGNYVVQ 770 (823)
Q Consensus 698 ~~~~~r~~Ii~~L~g~iv~Ls~~K~G-------S~VVEkcL~~a~~k~Rk~Ii~eLl~~~~~~e~L~~La~D~~GnyVIq 770 (823)
+.+..|+++++-|..++..|-..-.+ ...+.++|.-.+.++...++.-|. . ..+..+.-|.--+-
T Consensus 146 ~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~-~-------lkl~~t~~g~qeLv 217 (507)
T 3u0r_A 146 GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILS-G-------LKSLQTVSGRQQLV 217 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH-T-------SGGGSSHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-h-------cccccCchHHHHHH
Confidence 45677778888887777776554433 233444454456666666664442 2 13444444443222
Q ss_pred HHHh----------cCChhHHHHHHHHHHHhHHHHhhCCCchHHHHHH
Q 003398 771 KVLE----------TCDDQSLELILSRIRVHLNVLKKYTYGKHIVSRI 808 (823)
Q Consensus 771 klL~----------~~ddt~rk~Il~eLk~~L~~La~~~yGk~Vl~~l 808 (823)
.++. ..|++.-++++.-++..+.-......+.+++..+
T Consensus 218 ~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~ 265 (507)
T 3u0r_A 218 ELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYF 265 (507)
T ss_dssp HHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHH
T ss_pred HHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 2222 1344445666666666655555555555554443
No 23
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.71 E-value=3.8e+02 Score=25.93 Aligned_cols=191 Identities=10% Similarity=0.122 Sum_probs=95.4
Q ss_pred cCHHHHHHhhhCCHHHHHHHHHHHhHhHHH-----hhccccccchhhHhh---hcCCHHHHHHHHHHHh--hhHHHh---
Q 003398 506 GSRFIQQKLEAATAEEKTRIFPEIIPHART-----LMTDVFGNYVIQKFF---EHGTESQRAQLASQLT--GHVLRL--- 572 (823)
Q Consensus 506 GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~-----L~tD~~GshVIQKLL---e~~s~eqr~~Li~~L~--g~~~~L--- 572 (823)
+-..|-..++.++.+....+++.+..+-.. ...|..|.-.+...+ +.+..+..+.|++.-. +.+..+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 84 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence 334445555566666555555544332222 222355766666555 4455555555554421 111111
Q ss_pred ---hhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHH-hhc--------------ccCChHHHHHHHhCChhhHHHHH
Q 003398 573 ---SLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKC-VHD--------------QNGNHVIQKCIECIPQDRIQFII 634 (823)
Q Consensus 573 ---s~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~L-vkD--------------q~GnhVIQk~Le~~~~e~~~~Ii 634 (823)
..+..|.-.+..+......+....|++. -..+ ..+ .+|...+.........+..+.++
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEK----GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhC----CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 1123666666666665554433333331 1111 222 46777777777777777666666
Q ss_pred Hhh-hhhhhHhhcCcCcchhHHHHHhhCCCHHH----HHHHHHHHHHHHHHH--------hcCCCccHHHHHHHhcCCch
Q 003398 635 SSF-YGQVVALSTHPYGCRVIQRVLEHCDDANT----QQIIMDEIMQHVCNL--------AQDQYGNYVIQHVLEHGKPH 701 (823)
Q Consensus 635 ~~f-~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~----~~~Il~eLl~~l~~L--------a~DqyGNyVVQ~lLe~~~~~ 701 (823)
+.- .+.-+ -..+..|.-.+............ ...+++.+++.-..+ +.|..|...+......+..+
T Consensus 161 ~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 239 (260)
T 3jxi_A 161 ENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG 239 (260)
T ss_dssp HCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred hccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence 521 11111 13456676666666644332111 123445555544444 57778887777777766543
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=30.20 E-value=3.6e+02 Score=25.59 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=9.7
Q ss_pred HHHHHHhhCCHHHHHHHHHHH
Q 003398 726 VVEKCLTFGSPEERQLLINEM 746 (823)
Q Consensus 726 VVEkcL~~a~~k~Rk~Ii~eL 746 (823)
.+..++...++..|...+..|
T Consensus 174 ~L~~ll~~~~~~v~~~a~~~L 194 (252)
T 4hxt_A 174 VLVKLLTSTDSEVQKEAARAL 194 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHH
Confidence 334444444555555444444
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.56 E-value=2.3e+02 Score=26.86 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=103.5
Q ss_pred hccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHh-hhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCC
Q 003398 537 MTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRL-SLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGN 615 (823)
Q Consensus 537 ~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~L-s~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~Gn 615 (823)
.+|..|.-.+...+.++..+..+.|++.+...-..+ ..+..|...+..++.....+....|++. + ..--..+..|.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g-~~~~~~~~~g~ 80 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--G-ASPMALDRHGQ 80 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--T-CCTTCCCTTSC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--C-CCccccCCCCC
Confidence 357888999998999999888888887654322121 3456677777777766655544444431 1 11124577788
Q ss_pred hHHHHHHHhCChhhHHHHHHhhhhhhhH-hhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHH-HhcC-CCccHHHH
Q 003398 616 HVIQKCIECIPQDRIQFIISSFYGQVVA-LSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCN-LAQD-QYGNYVIQ 692 (823)
Q Consensus 616 hVIQk~Le~~~~e~~~~Ii~~f~g~l~~-Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~-La~D-qyGNyVVQ 692 (823)
..+..++.....+..+.+++........ -..+..|...+........ . .+++.+++.-.. -..+ ..|...+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~----~~~~~Ll~~g~~~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-Q----ETVQLLLERGADIDAVDIKSGRSPLI 155 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-H----HHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-H----HHHHHHHHcCCCcccccccCCCcHHH
Confidence 8888888888877777777654321111 1234455555554444321 1 233333332111 1123 56777777
Q ss_pred HHHhcCCchhHHHHHHHhHHhHHhh-cCCchHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 003398 693 HVLEHGKPHERTTVITQLAGQIVRM-SQQKFASNVVEKCLTFGSPEERQLLINEMLG 748 (823)
Q Consensus 693 ~lLe~~~~~~r~~Ii~~L~g~iv~L-s~~K~GS~VVEkcL~~a~~k~Rk~Ii~eLl~ 748 (823)
.....+..+ +++.|..+=..+ ..+..|.-.+..+...+. ..+++.|+.
T Consensus 156 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~ 204 (241)
T 1k1a_A 156 HAVENNSLS----MVQLLLQHGANVNAQMYSGSSALHSASGRGL----LPLVRTLVR 204 (241)
T ss_dssp HHHHTTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHH
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHh
Confidence 777665533 444443321111 234455445555554443 335555554
No 26
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.62 E-value=1.5e+02 Score=31.09 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHHhHHhHHhhcCCchHHHHHHHHH
Q 003398 705 TVITQLAGQIVRMSQQKFASNVVEKCL 731 (823)
Q Consensus 705 ~Ii~~L~g~iv~Ls~~K~GS~VVEkcL 731 (823)
.+++.+..-+..|+.+..+-..+..|+
T Consensus 210 RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 210 RLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 344444444455554444444444443
No 27
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=27.55 E-value=3.5e+02 Score=28.35 Aligned_cols=108 Identities=9% Similarity=0.107 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHhhhHHHhh---hccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhc-ccCChHHHHHHHhCChh
Q 003398 553 GTESQRAQLASQLTGHVLRLS---LQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHD-QNGNHVIQKCIECIPQD 628 (823)
Q Consensus 553 ~s~eqr~~Li~~L~g~~~~Ls---~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkD-q~GnhVIQk~Le~~~~e 628 (823)
.+++...+|-+.|...+.... ...-|...+-.++..++......+++.|...=.++... +.--|+...++ ..++.
T Consensus 115 v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~MF~FeDl~-~lddr 193 (279)
T 3pkr_A 115 ISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIV-KLDNF 193 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGGG-GSCHH
T ss_pred CCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHhccCHHHHh-cCCHH
Confidence 466666666666665554432 33445566667777777666666666554322222111 00112222222 33455
Q ss_pred hHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhC
Q 003398 629 RIQFIISSFYGQVVALSTHPYGCRVIQRVLEHC 661 (823)
Q Consensus 629 ~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~ 661 (823)
.++.|++.+-...+.++..-..--+-+++|...
T Consensus 194 ~iq~llreV~~~~L~~ALKGa~~elrekil~nm 226 (279)
T 3pkr_A 194 AIREILKVADKKDLSLALKTSTKDLTDKFLNNM 226 (279)
T ss_dssp HHHHHHHHSCHHHHHHHTTTSCHHHHHHHHTTS
T ss_pred HHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHhc
Confidence 555555555555555554444444455555544
No 28
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=27.09 E-value=5.5e+02 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=15.6
Q ss_pred ccccc-hHHHHhhhhcChHHHHHHHHhhh
Q 003398 575 QMYGC-RVIQKALEVVHVDQQTQMVAELD 602 (823)
Q Consensus 575 h~yGS-rVVQklLe~~~~eq~~~Ll~EL~ 602 (823)
...|+ -+.=+++..++++|...+.+++.
T Consensus 32 ~~~~~~~~~l~~L~~~sp~q~e~lc~~L~ 60 (264)
T 2ilr_A 32 GLEDAPPVELQLLHECSPSQMDLLCAQLQ 60 (264)
T ss_dssp ----CCCHHHHGGGGCCHHHHHHHHHHHT
T ss_pred cCCCCChHHHHHHHhCCHHHHHHHHHHHh
Confidence 44553 34445555588888888887764
No 29
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=26.96 E-value=2.1e+02 Score=29.15 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=7.8
Q ss_pred hhhcCCHHHHHHHHHHH
Q 003398 549 FFEHGTESQRAQLASQL 565 (823)
Q Consensus 549 LLe~~s~eqr~~Li~~L 565 (823)
+|+..+++.+..++..+
T Consensus 39 ~l~~L~~~~~~~v~~~l 55 (278)
T 2yvy_A 39 LWDELKGEHRYVVLTLL 55 (278)
T ss_dssp GGGGSCHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHhC
Confidence 34444444444444444
No 30
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.86 E-value=3.5e+02 Score=25.61 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=14.0
Q ss_pred cCCCccHHHHHHHhcCCchhHHHHHHHhH
Q 003398 683 QDQYGNYVIQHVLEHGKPHERTTVITQLA 711 (823)
Q Consensus 683 ~DqyGNyVVQ~lLe~~~~~~r~~Ii~~L~ 711 (823)
.|..|...+...+..+..+....+++.|.
T Consensus 150 ~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll 178 (232)
T 2rfa_A 150 QDSLGNTVLHILILQPNKTFACQMYNLLL 178 (232)
T ss_dssp CCTTSCCHHHHHHTCSCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555554433333334443
No 31
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.84 E-value=3e+02 Score=25.78 Aligned_cols=123 Identities=10% Similarity=-0.009 Sum_probs=57.5
Q ss_pred CcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHH
Q 003398 505 YGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQK 584 (823)
Q Consensus 505 ~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQk 584 (823)
+|...|...++.+..+....+++.- .---..+..|.-.+...+..+..+..+.|++.-. -.....+.+|...+..
T Consensus 8 ~~~~~l~~A~~~g~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 8 YSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA--IVDQLGGDLNSTPLHW 82 (240)
T ss_dssp GGGCCHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--CTTCCBTTTTBCHHHH
T ss_pred ccchHHHHHHHcCChHHHHHHHHcC---CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC--cchhhcCCcCCChhHH
Confidence 3444444555566555554444321 1111345667777777777666665555554311 1111222334445555
Q ss_pred hhhhcChHHHHHHHHhhhhhHHHHhhcccCChHHHHHHHhCChhhHHHHHH
Q 003398 585 ALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHVIQKCIECIPQDRIQFIIS 635 (823)
Q Consensus 585 lLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhVIQk~Le~~~~e~~~~Ii~ 635 (823)
+......+....+++. ....-..+..|...+..++.....+..+.+++
T Consensus 83 A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKY---GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130 (240)
T ss_dssp HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 5444443322222221 00011245566666766666666665555554
No 32
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.66 E-value=2.8e+02 Score=26.49 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHH-HHHhcCCCCchhHHHhhcCcchHHHHHHHHhcCChhHHHHHHHHHHHhHHHHhhCCCc
Q 003398 723 ASNVVEKCLTFGSPEERQLLI-NEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIRVHLNVLKKYTYG 801 (823)
Q Consensus 723 GS~VVEkcL~~a~~k~Rk~Ii-~eLl~~~~~~e~L~~La~D~~GnyVIqklL~~~ddt~rk~Il~eLk~~L~~La~~~yG 801 (823)
+=.|++.|++.|+......|. ++++ +.|..++.. ..+..++++|++-|..=-..+..+..-
T Consensus 72 AL~LLd~~vkNcG~~Fh~evas~~Fl------~el~~l~~~------------~~~~~Vk~kil~li~~W~~~f~~~~~l 133 (163)
T 1x5b_A 72 ALTLLGACVANCGKIFHLEVCSRDFA------TEVRAVIKN------------KAHPKVCEKLKSLMVEWSEEFQKDPQF 133 (163)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTSHHHH------HHHHHHHHT------------TCCHHHHHHHHHHHHHHHHHTTTCSTT
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHH------HHHHHHHcc------------CCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 446789999998887765554 3343 223333332 135567888888777666666665555
Q ss_pred hHHHHHHHHHHHcCC
Q 003398 802 KHIVSRIEKLIATGG 816 (823)
Q Consensus 802 k~Vl~~lek~~~~g~ 816 (823)
+.|.+.-+.+-..|-
T Consensus 134 ~~i~~~Y~~Lk~~G~ 148 (163)
T 1x5b_A 134 SLISATIKSMKEEGI 148 (163)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 566666666666653
No 33
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.72 E-value=3.6e+02 Score=24.76 Aligned_cols=93 Identities=11% Similarity=-0.016 Sum_probs=43.4
Q ss_pred ccccccchhhHhhhcCCHHHHHHHHHHHhhhHHHhhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHHHhhcccCChH
Q 003398 538 TDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLRLSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMKCVHDQNGNHV 617 (823)
Q Consensus 538 tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~LvkDq~GnhV 617 (823)
.|..|.-.+...+..+..+..+.|++.=. .--..+..|...+..+......+....+++.-.. .--..+..|...
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~ 109 (201)
T 3hra_A 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGA---DINLQNSISDSPYLYAGAQGRTEILAYMLKHATP--DLNKHNRYGGNA 109 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTSCCS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc--ccccccCCCCcH
Confidence 45566666666666666555555544200 0012334455455555544444333333322110 011344556666
Q ss_pred HHHHHHhCChhhHHHHHH
Q 003398 618 IQKCIECIPQDRIQFIIS 635 (823)
Q Consensus 618 IQk~Le~~~~e~~~~Ii~ 635 (823)
+.........+..+.+++
T Consensus 110 L~~A~~~~~~~~v~~Ll~ 127 (201)
T 3hra_A 110 LIPAAEKGHIDNVKLLLE 127 (201)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 666666555555555544
No 34
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=23.43 E-value=3.1e+02 Score=28.14 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=8.4
Q ss_pred HhhhhcChHHHHHHHHhhh
Q 003398 584 KALEVVHVDQQTQMVAELD 602 (823)
Q Consensus 584 klLe~~~~eq~~~Ll~EL~ 602 (823)
.+++.+..+....+++++.
T Consensus 79 ~ll~~l~~d~~~~ll~~l~ 97 (286)
T 2oux_A 79 DYLAEMRPSYAADMLAEMY 97 (286)
T ss_dssp HHHHHSCHHHHHHHHTTSC
T ss_pred HHHHhCCHHHHHHHHHhCC
Confidence 3444444444444444443
No 35
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.61 E-value=5.1e+02 Score=24.36 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=79.7
Q ss_pred ccccccchhhHhhhcCCHHHHHHHHHHHhhhHHH--hhhccccchHHHHhhhhcChHHHHHHHHhhhhhHHH--------
Q 003398 538 TDVFGNYVIQKFFEHGTESQRAQLASQLTGHVLR--LSLQMYGCRVIQKALEVVHVDQQTQMVAELDGSVMK-------- 607 (823)
Q Consensus 538 tD~~GshVIQKLLe~~s~eqr~~Li~~L~g~~~~--Ls~h~yGSrVVQklLe~~~~eq~~~Ll~EL~~~i~~-------- 607 (823)
.|..|.-.+.-....+..+..+.|++.-..-... -..+..|...+..+......+....|++.- ..+..
T Consensus 33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~ 111 (232)
T 2rfa_A 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSARATGSVFH 111 (232)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCSGGGS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCC-CCCCcccCCccee
Confidence 4667777777777777766666666542211100 123445666666665555444333333320 00000
Q ss_pred ---HhhcccCChHHHHHHHhCChhhHHHHHHhhhhhhhHhhcCcCcchhHHHHHhhCCCHHHHHHHHHHHHHHHHH----
Q 003398 608 ---CVHDQNGNHVIQKCIECIPQDRIQFIISSFYGQVVALSTHPYGCRVIQRVLEHCDDANTQQIIMDEIMQHVCN---- 680 (823)
Q Consensus 608 ---LvkDq~GnhVIQk~Le~~~~e~~~~Ii~~f~g~l~~Ls~hk~Gs~VVQklLe~~~~~~~~~~Il~eLl~~l~~---- 680 (823)
-..|.+|...+.........+..+.+++.=. ---..+..|.-.+........ .+....+++.+++.-..
T Consensus 112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~d~~g~t~L~~A~~~~~-~~~~~~i~~~Ll~~g~~~~~~ 187 (232)
T 2rfa_A 112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA---DIRAQDSLGNTVLHILILQPN-KTFACQMYNLLLSYDGGDHLK 187 (232)
T ss_dssp CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHTCSC-HHHHHHHHHHHHHTTCSCSSC
T ss_pred ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCC---CCCCCCCCCCCHHHHHHHcCC-hHHHHHHHHHHHhcCCchhhh
Confidence 0112367778877777777777766665311 111245667666666655432 22222233333332111
Q ss_pred ---HhcCCCccHHHHHHHhcCCc
Q 003398 681 ---LAQDQYGNYVIQHVLEHGKP 700 (823)
Q Consensus 681 ---La~DqyGNyVVQ~lLe~~~~ 700 (823)
-..|..|...+......+..
T Consensus 188 ~~~~~~~~~g~tpl~~A~~~g~~ 210 (232)
T 2rfa_A 188 SLELVPNNQGLTPFKLAGVEGNI 210 (232)
T ss_dssp CGGGCCCTTSCCHHHHHHHHTCH
T ss_pred hhhccCCCCCCCHHHHHHHcCCH
Confidence 25566777777777665553
No 36
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=21.01 E-value=4.5e+02 Score=25.42 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=30.2
Q ss_pred CCCcCHHHHHHhhhCCHHHHHHHHHHHhHhHHHhhccccccchhhHhhhcCCHHHHHHHHH
Q 003398 503 DQYGSRFIQQKLEAATAEEKTRIFPEIIPHARTLMTDVFGNYVIQKFFEHGTESQRAQLAS 563 (823)
Q Consensus 503 Dq~GSRvLQ~lLe~~s~Eqr~~If~EL~~~~~~L~tD~~GshVIQKLLe~~s~eqr~~Li~ 563 (823)
|..|.-.|......+..+....+++.-......-..|..|.-.+......+..+..+.|++
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 66 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4455555555555665554444443211111112345666666666666666555555544
No 37
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=20.93 E-value=3.8e+02 Score=26.88 Aligned_cols=52 Identities=8% Similarity=0.146 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHhhhHHHhhhc----cccchHHHHhhhhcChHHHHHHHHhhh
Q 003398 551 EHGTESQRAQLASQLTGHVLRLSLQ----MYGCRVIQKALEVVHVDQQTQMVAELD 602 (823)
Q Consensus 551 e~~s~eqr~~Li~~L~g~~~~Ls~h----~yGSrVVQklLe~~~~eq~~~Ll~EL~ 602 (823)
+..+++...+|-+.+...+...... .-|...+-.++..++.+....+++.|.
T Consensus 55 ~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN~~~~~~e~~il~~L~ 110 (216)
T 4fhr_B 55 ERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLV 110 (216)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHHcCChhHHHHHHHHHH
Confidence 3456776776666666555443322 235566666777777666666665553
No 38
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=20.67 E-value=5.1e+02 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=12.8
Q ss_pred hhhcCCHHHHHHHHHHHhhhHHHh
Q 003398 549 FFEHGTESQRAQLASQLTGHVLRL 572 (823)
Q Consensus 549 LLe~~s~eqr~~Li~~L~g~~~~L 572 (823)
.++..++++...+++.=.+++..+
T Consensus 57 ~L~~~dp~~La~~l~~EhPQtiAl 80 (279)
T 3pkr_A 57 YLGKIKPQQLADFIINEHPQTIAL 80 (279)
T ss_dssp GGGGSCHHHHHHHHTTSCHHHHHH
T ss_pred HHhCCCHHHHHHHHHhcCHHHHHH
Confidence 455566776666555444444433
Done!