Query 003399
Match_columns 823
No_of_seqs 474 out of 4119
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 22:43:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.4E-88 1.4E-92 786.1 35.2 747 1-781 1-865 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.4E-61 2E-65 589.8 41.4 602 157-798 184-904 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-38 2.5E-43 338.2 11.3 241 162-406 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.6E-23 9.9E-28 255.5 23.0 320 471-798 70-439 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.8E-23 6.2E-28 257.4 20.0 301 491-798 139-486 (968)
6 KOG0444 Cytoskeletal regulator 99.9 4.6E-26 9.9E-31 240.7 -5.2 314 470-798 55-373 (1255)
7 KOG4194 Membrane glycoprotein 99.8 2E-21 4.4E-26 204.9 5.2 315 470-797 102-426 (873)
8 PLN03210 Resistant to P. syrin 99.8 7E-18 1.5E-22 209.6 21.4 269 491-780 588-910 (1153)
9 KOG4194 Membrane glycoprotein 99.8 5.3E-20 1.2E-24 194.3 1.5 315 469-796 124-448 (873)
10 KOG0444 Cytoskeletal regulator 99.7 2.8E-20 6.1E-25 197.3 -6.4 287 491-797 31-326 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 4.5E-20 9.8E-25 186.9 -6.7 292 491-798 113-539 (565)
12 KOG0618 Serine/threonine phosp 99.6 9.4E-18 2E-22 186.9 -5.0 298 491-798 44-487 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 4.7E-18 1E-22 172.4 -10.0 261 493-798 46-308 (565)
14 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 4E-18 158.1 14.2 233 521-798 223-456 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 1.1E-13 2.3E-18 161.2 10.7 223 521-798 200-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.5 3.5E-13 7.6E-18 155.8 13.3 258 477-783 207-465 (788)
17 KOG0618 Serine/threonine phosp 99.4 1.3E-14 2.8E-19 162.3 -4.1 245 520-776 241-489 (1081)
18 KOG0617 Ras suppressor protein 99.4 1.5E-14 3.4E-19 130.4 -3.8 153 516-672 29-183 (264)
19 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3E-17 151.9 11.0 244 472-750 180-426 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 9.5E-13 2.1E-17 155.6 6.3 277 491-781 522-847 (889)
21 cd00116 LRR_RI Leucine-rich re 99.3 3.7E-13 8E-18 145.2 1.2 240 512-774 15-289 (319)
22 KOG0617 Ras suppressor protein 99.3 3.9E-14 8.4E-19 127.9 -5.4 169 534-760 25-193 (264)
23 cd00116 LRR_RI Leucine-rich re 99.2 2.9E-12 6.3E-17 138.2 2.4 260 491-774 22-318 (319)
24 KOG4237 Extracellular matrix p 99.2 2.3E-12 4.9E-17 131.5 -0.9 269 488-774 63-357 (498)
25 KOG4237 Extracellular matrix p 99.1 6.3E-12 1.4E-16 128.3 -2.0 250 522-798 69-357 (498)
26 KOG3207 Beta-tubulin folding c 98.9 4.2E-10 9.1E-15 116.8 3.9 235 539-801 117-368 (505)
27 PRK00411 cdc6 cell division co 98.9 2.3E-08 5E-13 111.1 16.8 282 157-443 30-375 (394)
28 KOG4341 F-box protein containi 98.9 1.6E-10 3.5E-15 119.2 -0.6 291 493-808 139-447 (483)
29 PRK04841 transcriptional regul 98.9 4.1E-08 8.8E-13 121.6 17.9 269 157-453 14-332 (903)
30 PF14580 LRR_9: Leucine-rich r 98.9 2.6E-09 5.7E-14 101.8 5.6 130 517-670 16-148 (175)
31 KOG2120 SCF ubiquitin ligase, 98.8 2E-10 4.4E-15 113.2 -2.4 63 712-774 311-374 (419)
32 KOG1909 Ran GTPase-activating 98.7 3.2E-09 6.9E-14 107.5 2.1 253 512-775 22-310 (382)
33 KOG3207 Beta-tubulin folding c 98.7 1.5E-09 3.3E-14 112.8 -0.5 214 555-798 110-337 (505)
34 KOG0532 Leucine-rich repeat (L 98.7 9.2E-10 2E-14 117.7 -3.9 154 512-673 90-245 (722)
35 KOG1259 Nischarin, modulator o 98.6 7.9E-09 1.7E-13 102.0 0.9 58 565-646 282-339 (490)
36 COG4886 Leucine-rich repeat (L 98.6 4.5E-08 9.8E-13 108.8 7.1 180 515-728 111-291 (394)
37 KOG1259 Nischarin, modulator o 98.6 2.1E-08 4.6E-13 99.0 2.5 135 632-781 280-416 (490)
38 TIGR02928 orc1/cdc6 family rep 98.6 4.9E-07 1.1E-11 99.3 13.5 116 157-277 15-141 (365)
39 PF14580 LRR_9: Leucine-rich r 98.6 4.7E-08 1E-12 93.2 4.3 108 491-604 18-127 (175)
40 KOG0532 Leucine-rich repeat (L 98.5 1.1E-08 2.4E-13 109.6 -2.3 190 521-724 76-270 (722)
41 KOG2120 SCF ubiquitin ligase, 98.5 7.1E-09 1.5E-13 102.5 -3.5 182 590-799 185-375 (419)
42 KOG4341 F-box protein containi 98.5 1.4E-08 3E-13 105.2 -2.3 279 491-795 163-460 (483)
43 PF05729 NACHT: NACHT domain 98.5 3.1E-07 6.8E-12 88.4 7.0 113 181-305 1-132 (166)
44 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.6E-12 73.3 3.3 58 544-601 2-60 (61)
45 cd01128 rho_factor Transcripti 98.4 3.5E-07 7.5E-12 93.0 6.5 95 180-277 16-115 (249)
46 PF13401 AAA_22: AAA domain; P 98.4 9.5E-07 2.1E-11 81.3 8.2 113 180-302 4-125 (131)
47 cd00009 AAA The AAA+ (ATPases 98.4 2.8E-06 6E-11 79.7 10.9 122 160-303 1-130 (151)
48 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6.2E-12 72.0 3.3 60 520-579 1-61 (61)
49 KOG1909 Ran GTPase-activating 98.4 1.5E-07 3.3E-12 95.6 1.9 240 491-750 29-309 (382)
50 KOG2982 Uncharacterized conser 98.3 2.1E-07 4.5E-12 92.3 2.3 67 689-755 198-265 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.3 3E-08 6.5E-13 96.8 -3.4 249 516-774 26-314 (388)
52 COG4886 Leucine-rich repeat (L 98.3 5.1E-07 1.1E-11 100.4 4.6 105 491-601 115-220 (394)
53 TIGR03015 pepcterm_ATPase puta 98.3 9.6E-06 2.1E-10 85.0 13.8 110 166-285 28-145 (269)
54 PRK09376 rho transcription ter 98.3 8.6E-07 1.9E-11 93.7 5.3 94 181-277 170-268 (416)
55 PF13191 AAA_16: AAA ATPase do 98.3 9.7E-07 2.1E-11 86.7 5.4 50 158-209 1-51 (185)
56 PLN03150 hypothetical protein; 98.2 2.6E-06 5.7E-11 99.4 8.1 89 521-610 419-510 (623)
57 TIGR00635 ruvB Holliday juncti 98.2 1.5E-06 3.3E-11 92.9 4.6 247 157-428 4-289 (305)
58 PF13173 AAA_14: AAA domain 98.2 3.9E-06 8.4E-11 76.8 6.4 101 180-306 2-102 (128)
59 PRK00080 ruvB Holliday junctio 98.1 9.8E-06 2.1E-10 87.3 10.4 249 157-429 25-311 (328)
60 PTZ00202 tuzin; Provisional 98.1 3.4E-05 7.4E-10 82.1 12.6 74 157-240 262-336 (550)
61 PF01637 Arch_ATPase: Archaeal 98.1 8.1E-06 1.8E-10 83.4 7.7 55 159-217 1-55 (234)
62 COG2909 MalT ATP-dependent tra 98.0 3.5E-05 7.5E-10 87.8 12.5 269 166-455 24-340 (894)
63 PTZ00112 origin recognition co 98.0 2.8E-05 6.1E-10 89.1 11.4 116 157-277 755-881 (1164)
64 TIGR00767 rho transcription te 98.0 1.2E-05 2.5E-10 85.8 6.8 95 180-277 168-267 (415)
65 KOG0531 Protein phosphatase 1, 97.9 2E-06 4.3E-11 95.9 -0.9 85 516-603 91-175 (414)
66 KOG2982 Uncharacterized conser 97.9 5.5E-06 1.2E-10 82.5 2.2 224 521-793 46-285 (418)
67 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 57.4 3.5 38 544-582 2-39 (44)
68 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.3E-10 57.0 3.3 41 520-560 1-41 (44)
69 COG1474 CDC6 Cdc6-related prot 97.8 0.00011 2.4E-09 79.2 11.4 113 157-277 17-135 (366)
70 PLN03150 hypothetical protein; 97.8 2.6E-05 5.6E-10 91.2 6.9 87 689-776 441-528 (623)
71 PRK13342 recombination factor 97.8 3.8E-05 8.2E-10 85.4 7.6 44 157-202 12-58 (413)
72 KOG2543 Origin recognition com 97.8 8.2E-05 1.8E-09 77.1 9.3 115 157-278 6-128 (438)
73 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.9E-10 93.2 3.7 107 491-601 121-231 (699)
74 TIGR02903 spore_lon_C ATP-depe 97.8 0.00075 1.6E-08 78.4 17.8 143 157-304 154-335 (615)
75 PRK06893 DNA replication initi 97.8 3.9E-05 8.4E-10 77.9 6.4 36 180-217 39-74 (229)
76 PRK15386 type III secretion pr 97.7 6.8E-05 1.5E-09 80.5 7.8 74 516-601 48-123 (426)
77 KOG0531 Protein phosphatase 1, 97.7 5.3E-06 1.1E-10 92.5 -0.8 104 491-602 94-198 (414)
78 COG3899 Predicted ATPase [Gene 97.7 0.00017 3.8E-09 86.6 11.9 286 158-454 1-387 (849)
79 PRK05564 DNA polymerase III su 97.7 0.00023 4.9E-09 76.2 11.6 127 157-306 4-136 (313)
80 PRK07003 DNA polymerase III su 97.7 0.00017 3.8E-09 82.5 10.5 137 157-305 16-161 (830)
81 COG2256 MGS1 ATPase related to 97.6 0.00012 2.7E-09 76.6 7.5 132 169-336 39-184 (436)
82 TIGR03420 DnaA_homol_Hda DnaA 97.6 9.2E-05 2E-09 75.3 6.4 51 163-217 23-73 (226)
83 PRK12402 replication factor C 97.6 0.00019 4E-09 78.0 8.9 44 157-202 15-58 (337)
84 PRK11331 5-methylcytosine-spec 97.6 0.00021 4.6E-09 77.7 9.0 109 157-278 175-285 (459)
85 PRK14961 DNA polymerase III su 97.6 0.0005 1.1E-08 75.0 12.1 45 157-202 16-60 (363)
86 KOG3665 ZYG-1-like serine/thre 97.6 7E-05 1.5E-09 87.3 5.4 109 491-604 147-264 (699)
87 PRK14957 DNA polymerase III su 97.5 0.00041 8.8E-09 78.4 10.6 45 157-202 16-60 (546)
88 PRK08116 hypothetical protein; 97.5 0.00027 5.9E-09 73.3 8.2 101 181-302 115-220 (268)
89 PRK13341 recombination factor 97.5 0.00019 4.2E-09 84.0 8.0 50 157-210 28-80 (725)
90 PLN03025 replication factor C 97.5 0.00053 1.1E-08 73.5 10.7 122 157-302 13-138 (319)
91 PRK14963 DNA polymerase III su 97.5 7.7E-05 1.7E-09 84.0 4.3 135 157-302 14-155 (504)
92 PRK12323 DNA polymerase III su 97.5 0.00065 1.4E-08 76.9 11.4 45 157-202 16-60 (700)
93 KOG1947 Leucine rich repeat pr 97.5 3.4E-05 7.4E-10 88.3 1.0 245 512-802 180-442 (482)
94 TIGR01242 26Sp45 26S proteasom 97.5 0.00012 2.7E-09 80.0 5.1 52 157-210 122-184 (364)
95 KOG1859 Leucine-rich repeat pr 97.5 3.8E-06 8.2E-11 93.0 -6.7 120 522-647 166-290 (1096)
96 KOG1859 Leucine-rich repeat pr 97.5 4.4E-06 9.6E-11 92.4 -6.1 36 568-603 165-200 (1096)
97 smart00382 AAA ATPases associa 97.4 0.00057 1.2E-08 63.3 8.9 88 181-278 3-91 (148)
98 PRK15386 type III secretion pr 97.4 0.00025 5.3E-09 76.3 7.0 56 539-600 48-104 (426)
99 PHA02544 44 clamp loader, smal 97.4 0.00064 1.4E-08 73.0 9.8 119 157-304 21-142 (316)
100 PRK14960 DNA polymerase III su 97.4 0.0011 2.3E-08 75.4 11.5 45 157-202 15-59 (702)
101 PRK04195 replication factor C 97.4 0.00055 1.2E-08 77.7 8.9 118 157-302 14-139 (482)
102 KOG1947 Leucine rich repeat pr 97.4 4.8E-05 1E-09 87.0 0.3 239 491-777 187-441 (482)
103 PRK14949 DNA polymerase III su 97.3 0.00082 1.8E-08 78.7 10.0 46 157-203 16-61 (944)
104 PRK00440 rfc replication facto 97.3 0.0011 2.4E-08 71.3 10.5 122 157-302 17-141 (319)
105 PRK08727 hypothetical protein; 97.3 0.00065 1.4E-08 69.1 7.7 36 180-217 41-76 (233)
106 PRK08691 DNA polymerase III su 97.3 0.0012 2.6E-08 75.6 10.5 45 157-202 16-60 (709)
107 PRK14958 DNA polymerase III su 97.3 0.0015 3.2E-08 74.0 11.0 45 157-202 16-60 (509)
108 KOG4579 Leucine-rich repeat (L 97.3 3.2E-05 6.8E-10 68.4 -1.8 83 521-603 28-113 (177)
109 PF05621 TniB: Bacterial TniB 97.3 0.0062 1.4E-07 62.7 14.4 114 157-277 34-157 (302)
110 COG3903 Predicted ATPase [Gene 97.3 0.00014 3.1E-09 76.6 2.6 234 179-429 13-293 (414)
111 PRK06645 DNA polymerase III su 97.3 0.0018 3.9E-08 72.8 11.5 142 157-307 21-173 (507)
112 PRK03992 proteasome-activating 97.2 0.00077 1.7E-08 74.1 8.2 46 157-202 131-187 (389)
113 PRK08118 topology modulation p 97.2 0.00013 2.7E-09 70.0 1.6 36 181-216 2-38 (167)
114 PF00004 AAA: ATPase family as 97.2 0.00066 1.4E-08 62.2 6.2 20 183-202 1-20 (132)
115 PRK14964 DNA polymerase III su 97.2 0.0024 5.2E-08 71.3 11.2 45 157-202 13-57 (491)
116 PRK05642 DNA replication initi 97.2 0.0012 2.6E-08 67.2 8.0 36 180-217 45-80 (234)
117 PRK14951 DNA polymerase III su 97.2 0.0028 6.1E-08 72.8 11.8 45 157-202 16-60 (618)
118 PRK14962 DNA polymerase III su 97.1 0.0021 4.6E-08 71.9 10.5 45 157-202 14-58 (472)
119 PF04665 Pox_A32: Poxvirus A32 97.1 0.00068 1.5E-08 67.9 5.8 36 180-217 13-48 (241)
120 PRK10536 hypothetical protein; 97.1 0.0051 1.1E-07 62.0 11.9 55 157-215 55-109 (262)
121 KOG2227 Pre-initiation complex 97.1 0.0021 4.5E-08 68.8 9.4 114 157-277 150-268 (529)
122 PRK14956 DNA polymerase III su 97.1 0.0017 3.8E-08 71.5 8.9 45 157-202 18-62 (484)
123 PRK14955 DNA polymerase III su 97.1 0.0023 5E-08 70.7 10.0 147 157-306 16-171 (397)
124 KOG2028 ATPase related to the 97.0 0.0015 3.2E-08 67.3 7.1 98 179-304 161-262 (554)
125 PRK12377 putative replication 97.0 0.0021 4.6E-08 65.4 8.3 36 180-217 101-136 (248)
126 PRK08181 transposase; Validate 97.0 0.0017 3.7E-08 66.9 7.7 35 181-217 107-141 (269)
127 PRK14969 DNA polymerase III su 97.0 0.0041 8.8E-08 71.0 11.2 45 157-202 16-60 (527)
128 CHL00095 clpC Clp protease ATP 97.0 0.0016 3.5E-08 78.7 8.1 44 157-202 179-222 (821)
129 PRK07994 DNA polymerase III su 97.0 0.0025 5.5E-08 73.3 9.1 45 157-202 16-60 (647)
130 TIGR02397 dnaX_nterm DNA polym 97.0 0.0061 1.3E-07 66.7 11.8 45 157-202 14-58 (355)
131 KOG4579 Leucine-rich repeat (L 97.0 0.0002 4.3E-09 63.5 0.0 87 515-602 48-135 (177)
132 PRK07940 DNA polymerase III su 96.9 0.0046 9.9E-08 67.6 10.4 46 157-202 5-58 (394)
133 PRK05896 DNA polymerase III su 96.9 0.0051 1.1E-07 69.9 10.6 45 157-202 16-60 (605)
134 PRK07261 topology modulation p 96.9 0.0017 3.6E-08 62.6 6.0 67 182-277 2-69 (171)
135 PRK08084 DNA replication initi 96.9 0.0028 6E-08 64.6 7.9 36 180-217 45-80 (235)
136 TIGR00678 holB DNA polymerase 96.9 0.011 2.4E-07 58.0 11.8 40 264-303 95-136 (188)
137 PRK14952 DNA polymerase III su 96.9 0.0078 1.7E-07 68.9 11.9 45 157-202 13-57 (584)
138 PHA00729 NTP-binding motif con 96.8 0.0032 6.9E-08 62.4 7.4 33 168-202 7-39 (226)
139 PF05496 RuvB_N: Holliday junc 96.8 0.00093 2E-08 65.5 3.5 52 157-210 24-78 (233)
140 TIGR02639 ClpA ATP-dependent C 96.8 0.0026 5.6E-08 76.1 7.9 44 157-202 182-225 (731)
141 PRK09087 hypothetical protein; 96.8 0.0058 1.3E-07 61.7 9.3 24 180-203 44-67 (226)
142 TIGR02881 spore_V_K stage V sp 96.8 0.0024 5.1E-08 66.4 6.6 46 157-202 6-64 (261)
143 PRK10865 protein disaggregatio 96.8 0.0036 7.8E-08 75.7 8.7 44 157-202 178-221 (857)
144 PTZ00454 26S protease regulato 96.8 0.0033 7.1E-08 68.9 7.6 46 157-202 145-201 (398)
145 PRK09183 transposase/IS protei 96.8 0.0038 8.3E-08 64.4 7.7 22 181-202 103-124 (259)
146 PRK07764 DNA polymerase III su 96.7 0.0069 1.5E-07 72.2 10.6 45 157-202 15-59 (824)
147 PRK14970 DNA polymerase III su 96.7 0.0083 1.8E-07 65.8 10.7 45 157-202 17-61 (367)
148 PRK06526 transposase; Provisio 96.7 0.0026 5.6E-08 65.3 6.2 23 180-202 98-120 (254)
149 PRK09361 radB DNA repair and r 96.7 0.0047 1E-07 62.6 8.1 101 169-275 12-117 (225)
150 CHL00181 cbbX CbbX; Provisiona 96.7 0.0085 1.8E-07 62.8 10.1 46 157-202 23-81 (287)
151 PF00308 Bac_DnaA: Bacterial d 96.7 0.0051 1.1E-07 61.8 8.2 120 159-302 11-139 (219)
152 PRK14088 dnaA chromosomal repl 96.7 0.0086 1.9E-07 66.9 10.7 99 180-301 130-235 (440)
153 PRK06921 hypothetical protein; 96.7 0.0058 1.3E-07 63.3 8.6 122 180-337 117-249 (266)
154 cd01393 recA_like RecA is a b 96.7 0.011 2.4E-07 59.9 10.4 101 171-276 10-125 (226)
155 PRK14954 DNA polymerase III su 96.6 0.0087 1.9E-07 69.1 10.2 45 157-202 16-60 (620)
156 TIGR02639 ClpA ATP-dependent C 96.6 0.0056 1.2E-07 73.2 8.9 115 157-288 454-578 (731)
157 cd01133 F1-ATPase_beta F1 ATP 96.6 0.005 1.1E-07 63.0 7.3 101 180-284 69-183 (274)
158 PRK09111 DNA polymerase III su 96.6 0.012 2.5E-07 67.9 11.0 45 157-202 24-68 (598)
159 KOG1644 U2-associated snRNP A' 96.6 0.0048 1E-07 58.8 6.5 57 544-602 43-100 (233)
160 TIGR02880 cbbX_cfxQ probable R 96.6 0.0096 2.1E-07 62.4 9.5 45 158-202 23-80 (284)
161 PRK08903 DnaA regulatory inact 96.6 0.0045 9.8E-08 62.9 6.8 46 158-203 19-65 (227)
162 PF05673 DUF815: Protein of un 96.6 0.0095 2.1E-07 59.4 8.7 117 157-305 27-153 (249)
163 PRK12608 transcription termina 96.6 0.0059 1.3E-07 65.1 7.6 108 165-277 119-232 (380)
164 PRK06835 DNA replication prote 96.6 0.0062 1.3E-07 64.9 7.9 35 181-217 184-218 (329)
165 TIGR03689 pup_AAA proteasome A 96.6 0.0096 2.1E-07 66.8 9.7 47 157-203 182-239 (512)
166 PRK14950 DNA polymerase III su 96.6 0.012 2.6E-07 68.4 10.7 136 157-302 16-159 (585)
167 PF12061 DUF3542: Protein of u 96.5 0.0028 6.2E-08 63.8 4.7 106 3-120 296-401 (402)
168 COG1484 DnaC DNA replication p 96.5 0.0066 1.4E-07 62.3 7.6 75 179-276 104-178 (254)
169 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0057 1.2E-07 74.3 8.3 44 157-202 173-216 (852)
170 PRK14959 DNA polymerase III su 96.5 0.016 3.5E-07 66.3 11.3 46 157-203 16-61 (624)
171 PRK00149 dnaA chromosomal repl 96.5 0.011 2.4E-07 66.6 9.9 99 180-302 148-253 (450)
172 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0074 1.6E-07 61.7 7.8 101 173-276 12-126 (235)
173 PF01695 IstB_IS21: IstB-like 96.5 0.0019 4.1E-08 62.5 3.2 36 180-217 47-82 (178)
174 PRK14971 DNA polymerase III su 96.5 0.021 4.5E-07 66.4 11.9 45 157-202 17-61 (614)
175 PRK11034 clpA ATP-dependent Cl 96.4 0.0054 1.2E-07 72.5 7.1 44 157-202 186-229 (758)
176 COG0542 clpA ATP-binding subun 96.4 0.045 9.7E-07 63.8 14.1 115 157-289 491-619 (786)
177 PRK08451 DNA polymerase III su 96.4 0.026 5.6E-07 63.8 12.0 45 157-202 14-58 (535)
178 PRK06305 DNA polymerase III su 96.4 0.019 4.1E-07 64.3 10.7 45 157-202 17-61 (451)
179 PTZ00361 26 proteosome regulat 96.4 0.0063 1.4E-07 67.2 6.8 52 157-210 183-245 (438)
180 PRK06620 hypothetical protein; 96.4 0.011 2.3E-07 59.2 7.8 23 181-203 45-67 (214)
181 CHL00095 clpC Clp protease ATP 96.4 0.2 4.4E-06 60.8 20.2 119 157-289 509-637 (821)
182 TIGR02237 recomb_radB DNA repa 96.4 0.015 3.3E-07 58.2 9.0 97 173-275 5-107 (209)
183 PRK10865 protein disaggregatio 96.4 0.017 3.7E-07 70.0 10.9 46 157-202 568-620 (857)
184 KOG1644 U2-associated snRNP A' 96.4 0.0046 1E-07 58.9 4.7 107 521-647 43-151 (233)
185 PF13207 AAA_17: AAA domain; P 96.4 0.0026 5.7E-08 57.3 3.1 21 182-202 1-21 (121)
186 TIGR03345 VI_ClpV1 type VI sec 96.4 0.007 1.5E-07 73.1 7.5 44 157-202 187-230 (852)
187 PRK07952 DNA replication prote 96.4 0.013 2.9E-07 59.4 8.5 80 180-281 99-180 (244)
188 PRK14965 DNA polymerase III su 96.4 0.023 4.9E-07 65.8 11.4 45 157-202 16-60 (576)
189 cd01120 RecA-like_NTPases RecA 96.3 0.012 2.6E-07 56.0 7.8 39 182-224 1-39 (165)
190 PRK14087 dnaA chromosomal repl 96.3 0.01 2.3E-07 66.3 8.2 101 180-302 141-248 (450)
191 PRK07471 DNA polymerase III su 96.3 0.033 7.1E-07 60.4 11.7 45 157-202 19-63 (365)
192 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0026 5.5E-08 67.5 3.1 46 158-203 52-101 (361)
193 PRK08939 primosomal protein Dn 96.3 0.013 2.8E-07 61.9 8.4 118 161-302 135-260 (306)
194 PRK12422 chromosomal replicati 96.3 0.0087 1.9E-07 66.7 7.2 99 180-302 141-244 (445)
195 PRK05703 flhF flagellar biosyn 96.3 0.46 9.9E-06 52.8 20.7 36 180-217 221-258 (424)
196 PRK05541 adenylylsulfate kinas 96.3 0.015 3.3E-07 56.3 8.1 37 179-217 6-42 (176)
197 PRK14953 DNA polymerase III su 96.3 0.029 6.3E-07 63.3 11.3 45 157-202 16-60 (486)
198 KOG2739 Leucine-rich acidic nu 96.2 0.0016 3.4E-08 64.7 1.0 88 515-604 38-130 (260)
199 TIGR00362 DnaA chromosomal rep 96.2 0.014 3E-07 64.9 8.5 99 180-302 136-241 (405)
200 TIGR03346 chaperone_ClpB ATP-d 96.2 0.018 4E-07 70.0 10.1 117 157-288 565-692 (852)
201 PF02562 PhoH: PhoH-like prote 96.2 0.009 1.9E-07 58.6 6.0 55 160-218 3-57 (205)
202 COG5238 RNA1 Ran GTPase-activa 96.2 0.0028 6.1E-08 62.8 2.3 214 538-775 25-284 (388)
203 COG1373 Predicted ATPase (AAA+ 96.2 0.023 5E-07 62.6 9.7 96 182-307 39-135 (398)
204 PRK05563 DNA polymerase III su 96.2 0.051 1.1E-06 62.6 12.8 45 157-202 16-60 (559)
205 TIGR03345 VI_ClpV1 type VI sec 96.2 0.0098 2.1E-07 71.8 7.3 46 157-202 566-618 (852)
206 PF13177 DNA_pol3_delta2: DNA 96.1 0.043 9.3E-07 52.3 10.0 119 162-304 2-143 (162)
207 COG0470 HolB ATPase involved i 96.1 0.042 9.1E-07 59.2 11.3 121 158-302 2-148 (325)
208 PRK14722 flhF flagellar biosyn 96.1 0.28 6E-06 53.0 17.1 87 180-276 137-226 (374)
209 PRK07667 uridine kinase; Provi 96.1 0.008 1.7E-07 59.2 5.0 37 166-202 3-39 (193)
210 CHL00176 ftsH cell division pr 96.1 0.014 3.1E-07 67.7 7.8 46 157-202 183-238 (638)
211 PRK06696 uridine kinase; Valid 96.0 0.0058 1.3E-07 61.8 4.0 41 162-202 3-44 (223)
212 PRK11034 clpA ATP-dependent Cl 96.0 0.012 2.7E-07 69.6 7.2 46 157-202 458-510 (758)
213 PRK07133 DNA polymerase III su 96.0 0.047 1E-06 63.6 11.7 45 157-202 18-62 (725)
214 PRK09112 DNA polymerase III su 96.0 0.032 7E-07 60.1 9.8 45 157-202 23-67 (351)
215 KOG2123 Uncharacterized conser 96.0 0.00087 1.9E-08 66.6 -2.1 80 518-600 17-98 (388)
216 PF13671 AAA_33: AAA domain; P 96.0 0.017 3.6E-07 53.8 6.7 21 182-202 1-21 (143)
217 TIGR00602 rad24 checkpoint pro 96.0 0.012 2.7E-07 67.8 6.8 46 157-202 84-132 (637)
218 cd03214 ABC_Iron-Siderophores_ 96.0 0.039 8.5E-07 53.7 9.4 123 180-306 25-161 (180)
219 TIGR00763 lon ATP-dependent pr 95.9 0.059 1.3E-06 65.0 12.6 52 157-210 320-375 (775)
220 KOG2123 Uncharacterized conser 95.9 0.0014 3E-08 65.2 -1.2 99 491-596 18-123 (388)
221 cd01394 radB RadB. The archaea 95.9 0.044 9.5E-07 55.2 9.6 53 169-225 8-60 (218)
222 KOG0989 Replication factor C, 95.9 0.023 5E-07 57.8 7.2 129 157-304 36-170 (346)
223 COG1618 Predicted nucleotide k 95.9 0.0064 1.4E-07 55.8 3.0 36 180-217 5-41 (179)
224 KOG2739 Leucine-rich acidic nu 95.8 0.0047 1E-07 61.4 2.2 86 539-647 39-127 (260)
225 TIGR02640 gas_vesic_GvpN gas v 95.8 0.075 1.6E-06 55.1 11.2 53 166-229 11-63 (262)
226 PF07728 AAA_5: AAA domain (dy 95.8 0.0063 1.4E-07 56.4 2.9 42 183-231 2-43 (139)
227 KOG2004 Mitochondrial ATP-depe 95.8 0.034 7.3E-07 62.8 8.9 102 157-276 411-516 (906)
228 COG1875 NYN ribonuclease and A 95.8 0.033 7.1E-07 58.1 8.1 167 160-341 227-418 (436)
229 PRK15455 PrkA family serine pr 95.8 0.0068 1.5E-07 67.7 3.5 46 157-202 76-125 (644)
230 TIGR02858 spore_III_AA stage I 95.8 0.11 2.5E-06 53.6 12.2 132 165-307 97-233 (270)
231 TIGR01241 FtsH_fam ATP-depende 95.8 0.02 4.4E-07 65.3 7.4 46 157-202 55-110 (495)
232 PRK06647 DNA polymerase III su 95.8 0.07 1.5E-06 61.3 11.6 46 157-203 16-61 (563)
233 COG0572 Udk Uridine kinase [Nu 95.8 0.02 4.2E-07 56.2 6.1 79 179-266 7-85 (218)
234 PRK14948 DNA polymerase III su 95.8 0.059 1.3E-06 62.7 11.1 46 157-203 16-61 (620)
235 PF08423 Rad51: Rad51; InterP 95.7 0.016 3.4E-07 59.8 5.6 105 169-276 27-144 (256)
236 TIGR02012 tigrfam_recA protein 95.6 0.033 7.2E-07 58.7 7.8 98 169-275 43-143 (321)
237 PRK14086 dnaA chromosomal repl 95.6 0.04 8.6E-07 62.9 8.8 99 180-302 314-419 (617)
238 PRK09270 nucleoside triphospha 95.6 0.044 9.6E-07 55.6 8.5 26 177-202 30-55 (229)
239 PRK13695 putative NTPase; Prov 95.6 0.0084 1.8E-07 58.0 3.0 34 182-217 2-36 (174)
240 PRK08233 hypothetical protein; 95.6 0.036 7.7E-07 54.0 7.6 23 180-202 3-25 (182)
241 PRK15429 formate hydrogenlyase 95.6 0.07 1.5E-06 63.7 11.4 47 157-203 376-422 (686)
242 KOG0734 AAA+-type ATPase conta 95.6 0.054 1.2E-06 59.1 9.0 112 157-298 304-442 (752)
243 TIGR01243 CDC48 AAA family ATP 95.6 0.021 4.5E-07 68.6 6.8 46 157-202 178-234 (733)
244 PRK06762 hypothetical protein; 95.6 0.048 1E-06 52.2 8.1 23 180-202 2-24 (166)
245 PRK04301 radA DNA repair and r 95.6 0.04 8.7E-07 59.0 8.2 67 169-238 91-161 (317)
246 PRK11608 pspF phage shock prot 95.6 0.045 9.7E-07 58.7 8.6 46 157-202 6-51 (326)
247 PRK04296 thymidine kinase; Pro 95.6 0.029 6.4E-07 55.0 6.6 113 181-304 3-117 (190)
248 cd00983 recA RecA is a bacter 95.5 0.036 7.8E-07 58.6 7.5 98 169-275 43-143 (325)
249 PF07693 KAP_NTPase: KAP famil 95.5 0.13 2.9E-06 55.3 12.3 40 163-202 2-42 (325)
250 PRK09354 recA recombinase A; P 95.5 0.043 9.4E-07 58.4 8.1 98 169-275 48-148 (349)
251 PRK05022 anaerobic nitric oxid 95.5 0.12 2.6E-06 59.3 12.4 47 157-203 187-233 (509)
252 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.048 1E-06 51.2 7.5 120 181-303 3-138 (159)
253 cd03247 ABCC_cytochrome_bd The 95.5 0.093 2E-06 50.9 9.7 24 180-203 28-51 (178)
254 PF00485 PRK: Phosphoribulokin 95.5 0.063 1.4E-06 52.9 8.7 83 182-269 1-87 (194)
255 KOG1514 Origin recognition com 95.4 0.11 2.3E-06 58.9 11.0 134 157-300 396-546 (767)
256 PF14532 Sigma54_activ_2: Sigm 95.4 0.013 2.7E-07 54.3 3.3 44 160-203 1-44 (138)
257 cd03238 ABC_UvrA The excision 95.4 0.076 1.7E-06 51.2 8.7 116 180-307 21-153 (176)
258 KOG0741 AAA+-type ATPase [Post 95.4 0.069 1.5E-06 58.2 8.9 100 179-307 537-655 (744)
259 PF00448 SRP54: SRP54-type pro 95.3 0.032 6.9E-07 54.9 6.1 56 180-239 1-57 (196)
260 cd01131 PilT Pilus retraction 95.3 0.037 8E-07 54.7 6.5 112 181-307 2-113 (198)
261 PLN03186 DNA repair protein RA 95.3 0.089 1.9E-06 56.4 9.8 105 168-275 111-228 (342)
262 PRK12727 flagellar biosynthesi 95.3 0.46 9.9E-06 53.3 15.4 23 180-202 350-372 (559)
263 PF13604 AAA_30: AAA domain; P 95.3 0.028 6.1E-07 55.4 5.5 113 167-299 7-127 (196)
264 COG0593 DnaA ATPase involved i 95.3 0.044 9.5E-07 59.4 7.3 99 179-302 112-217 (408)
265 COG0468 RecA RecA/RadA recombi 95.3 0.087 1.9E-06 54.3 9.1 97 172-276 52-152 (279)
266 PRK11889 flhF flagellar biosyn 95.2 0.19 4.2E-06 54.0 11.7 24 179-202 240-263 (436)
267 TIGR01817 nifA Nif-specific re 95.2 0.073 1.6E-06 61.6 9.5 47 157-203 196-242 (534)
268 cd03216 ABC_Carb_Monos_I This 95.2 0.05 1.1E-06 52.0 6.7 113 180-305 26-144 (163)
269 KOG4252 GTP-binding protein [S 95.2 0.048 1E-06 50.5 6.1 107 182-341 22-131 (246)
270 PF13238 AAA_18: AAA domain; P 95.2 0.014 3.1E-07 53.0 2.8 20 183-202 1-20 (129)
271 COG2255 RuvB Holliday junction 95.1 0.012 2.6E-07 59.2 2.3 51 157-209 26-79 (332)
272 TIGR02238 recomb_DMC1 meiotic 95.1 0.11 2.4E-06 55.0 9.7 104 169-275 85-201 (313)
273 PRK06002 fliI flagellum-specif 95.1 0.065 1.4E-06 58.9 8.0 93 180-277 165-266 (450)
274 cd03115 SRP The signal recogni 95.1 0.11 2.4E-06 50.1 9.0 21 182-202 2-22 (173)
275 COG2607 Predicted ATPase (AAA+ 95.1 0.14 3E-06 50.5 9.2 113 157-303 60-183 (287)
276 COG4608 AppF ABC-type oligopep 95.1 0.08 1.7E-06 53.6 7.9 124 180-307 39-174 (268)
277 TIGR03499 FlhF flagellar biosy 95.1 0.079 1.7E-06 55.5 8.4 36 180-217 194-231 (282)
278 PTZ00301 uridine kinase; Provi 95.1 0.019 4.1E-07 57.0 3.6 23 180-202 3-25 (210)
279 TIGR00064 ftsY signal recognit 95.1 0.11 2.3E-06 54.1 9.2 37 179-217 71-107 (272)
280 TIGR02974 phageshock_pspF psp 95.1 0.068 1.5E-06 57.3 8.0 45 159-203 1-45 (329)
281 PRK06547 hypothetical protein; 95.0 0.026 5.6E-07 54.3 4.2 24 179-202 14-37 (172)
282 TIGR01069 mutS2 MutS2 family p 95.0 0.074 1.6E-06 63.5 8.9 23 180-202 322-344 (771)
283 PLN00020 ribulose bisphosphate 95.0 0.045 9.8E-07 57.9 6.2 31 178-210 146-176 (413)
284 TIGR01243 CDC48 AAA family ATP 95.0 0.11 2.3E-06 62.6 10.4 46 157-202 453-509 (733)
285 KOG0991 Replication factor C, 95.0 0.04 8.6E-07 53.7 5.2 44 157-202 27-70 (333)
286 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 35.1 1.0 17 545-561 2-18 (22)
287 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.058 1.3E-06 52.6 6.7 21 182-202 1-21 (183)
288 PRK08058 DNA polymerase III su 94.9 0.13 2.9E-06 55.2 9.9 44 158-202 6-50 (329)
289 KOG0735 AAA+-type ATPase [Post 94.9 0.039 8.6E-07 62.2 5.8 73 180-276 431-505 (952)
290 PRK04040 adenylate kinase; Pro 94.9 0.065 1.4E-06 52.4 6.8 23 180-202 2-24 (188)
291 cd03246 ABCC_Protease_Secretio 94.9 0.077 1.7E-06 51.2 7.2 23 180-202 28-50 (173)
292 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.17 3.7E-06 51.1 9.7 125 181-307 31-203 (254)
293 TIGR02236 recomb_radA DNA repa 94.9 0.095 2.1E-06 55.9 8.5 67 169-238 84-154 (310)
294 PRK05480 uridine/cytidine kina 94.9 0.021 4.6E-07 57.1 3.3 24 179-202 5-28 (209)
295 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.12 2.6E-06 48.1 8.1 24 180-203 26-49 (144)
296 PLN03187 meiotic recombination 94.8 0.16 3.4E-06 54.5 9.9 102 171-275 117-231 (344)
297 TIGR02239 recomb_RAD51 DNA rep 94.8 0.14 3E-06 54.5 9.5 70 167-239 83-156 (316)
298 TIGR00235 udk uridine kinase. 94.8 0.023 4.9E-07 56.8 3.4 24 179-202 5-28 (207)
299 cd01121 Sms Sms (bacterial rad 94.8 0.12 2.7E-06 56.0 9.1 99 167-275 69-168 (372)
300 COG1428 Deoxynucleoside kinase 94.8 0.018 3.9E-07 55.7 2.3 24 180-203 4-27 (216)
301 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.4E-07 35.1 0.5 20 568-587 1-20 (22)
302 cd03228 ABCC_MRP_Like The MRP 94.7 0.098 2.1E-06 50.4 7.5 23 180-202 28-50 (171)
303 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.1 2.2E-06 49.5 7.5 114 181-307 26-144 (157)
304 PRK00771 signal recognition pa 94.7 0.18 4E-06 55.8 10.3 90 179-275 94-185 (437)
305 cd01135 V_A-ATPase_B V/A-type 94.7 0.096 2.1E-06 53.7 7.5 102 181-284 70-186 (276)
306 PRK07399 DNA polymerase III su 94.7 0.12 2.6E-06 54.9 8.6 45 157-202 4-48 (314)
307 cd02025 PanK Pantothenate kina 94.7 0.1 2.2E-06 52.5 7.6 21 182-202 1-21 (220)
308 PRK08972 fliI flagellum-specif 94.7 0.098 2.1E-06 57.3 7.9 99 180-284 162-272 (444)
309 PRK10463 hydrogenase nickel in 94.6 0.089 1.9E-06 54.5 7.2 91 178-276 102-195 (290)
310 cd02019 NK Nucleoside/nucleoti 94.6 0.023 5E-07 45.3 2.3 21 182-202 1-21 (69)
311 PRK08927 fliI flagellum-specif 94.6 0.086 1.9E-06 57.9 7.5 92 180-277 158-260 (442)
312 cd03222 ABC_RNaseL_inhibitor T 94.6 0.14 3E-06 49.4 8.1 23 180-202 25-47 (177)
313 COG1223 Predicted ATPase (AAA+ 94.6 0.13 2.7E-06 51.2 7.7 47 157-203 121-174 (368)
314 COG2884 FtsE Predicted ATPase 94.6 0.28 6E-06 46.8 9.6 124 180-307 28-201 (223)
315 PRK12724 flagellar biosynthesi 94.6 0.13 2.9E-06 55.9 8.7 23 180-202 223-245 (432)
316 PRK05707 DNA polymerase III su 94.6 0.3 6.4E-06 52.3 11.3 26 177-202 19-44 (328)
317 COG0466 Lon ATP-dependent Lon 94.6 0.024 5.2E-07 64.2 3.1 103 157-277 323-429 (782)
318 PRK14723 flhF flagellar biosyn 94.5 0.32 7E-06 57.1 12.1 23 180-202 185-207 (767)
319 PRK08149 ATP synthase SpaL; Va 94.5 0.14 3E-06 56.3 8.6 92 180-277 151-253 (428)
320 PRK10867 signal recognition pa 94.5 0.19 4.1E-06 55.6 9.8 24 179-202 99-122 (433)
321 cd03223 ABCD_peroxisomal_ALDP 94.5 0.29 6.3E-06 46.8 10.1 24 180-203 27-50 (166)
322 cd02027 APSK Adenosine 5'-phos 94.5 0.23 5E-06 46.6 9.1 21 182-202 1-21 (149)
323 TIGR01425 SRP54_euk signal rec 94.5 0.83 1.8E-05 50.3 14.5 24 179-202 99-122 (429)
324 KOG0733 Nuclear AAA ATPase (VC 94.5 0.081 1.8E-06 58.8 6.7 94 157-276 190-293 (802)
325 PRK06067 flagellar accessory p 94.5 0.15 3.3E-06 51.9 8.5 100 169-275 14-130 (234)
326 KOG2228 Origin recognition com 94.4 0.15 3.3E-06 52.7 8.1 142 157-303 24-182 (408)
327 TIGR00390 hslU ATP-dependent p 94.4 0.074 1.6E-06 57.6 6.2 77 157-237 12-104 (441)
328 PRK12597 F0F1 ATP synthase sub 94.4 0.088 1.9E-06 58.4 6.9 95 180-277 143-249 (461)
329 cd02021 GntK Gluconate kinase 94.3 0.27 5.9E-06 46.0 9.4 21 182-202 1-21 (150)
330 PRK06995 flhF flagellar biosyn 94.3 1.2 2.7E-05 49.8 15.7 23 180-202 256-278 (484)
331 CHL00195 ycf46 Ycf46; Provisio 94.3 0.095 2.1E-06 59.0 7.1 46 157-202 228-281 (489)
332 PRK03839 putative kinase; Prov 94.3 0.026 5.6E-07 54.9 2.3 21 182-202 2-22 (180)
333 PRK14721 flhF flagellar biosyn 94.3 0.49 1.1E-05 52.0 12.3 23 180-202 191-213 (420)
334 PRK14974 cell division protein 94.3 0.27 5.9E-06 52.5 10.1 114 179-299 139-260 (336)
335 PRK12723 flagellar biosynthesi 94.3 0.6 1.3E-05 50.9 12.9 101 179-288 173-281 (388)
336 KOG3864 Uncharacterized conser 94.3 0.0044 9.6E-08 59.1 -2.9 85 691-775 102-188 (221)
337 KOG0744 AAA+-type ATPase [Post 94.2 0.12 2.5E-06 53.1 6.8 81 180-276 177-261 (423)
338 PF07726 AAA_3: ATPase family 94.2 0.022 4.9E-07 50.7 1.5 28 183-212 2-29 (131)
339 PTZ00035 Rad51 protein; Provis 94.2 0.39 8.4E-06 51.6 11.1 106 168-276 106-224 (337)
340 PRK10787 DNA-binding ATP-depen 94.2 0.06 1.3E-06 64.4 5.4 52 157-210 322-377 (784)
341 PF00154 RecA: recA bacterial 94.2 0.18 3.9E-06 53.1 8.3 101 179-288 52-154 (322)
342 COG1222 RPT1 ATP-dependent 26S 94.1 0.29 6.2E-06 51.3 9.4 124 157-307 151-304 (406)
343 PRK10733 hflB ATP-dependent me 94.1 0.12 2.5E-06 60.9 7.6 46 157-202 152-207 (644)
344 PF08433 KTI12: Chromatin asso 94.1 0.079 1.7E-06 54.8 5.4 22 181-202 2-23 (270)
345 TIGR00959 ffh signal recogniti 94.1 0.45 9.7E-06 52.6 11.5 91 179-275 98-192 (428)
346 KOG1969 DNA replication checkp 94.0 0.12 2.6E-06 58.7 7.0 73 179-277 325-399 (877)
347 TIGR03574 selen_PSTK L-seryl-t 94.0 0.15 3.2E-06 52.6 7.4 21 182-202 1-21 (249)
348 TIGR00150 HI0065_YjeE ATPase, 94.0 0.053 1.1E-06 49.3 3.5 39 165-203 7-45 (133)
349 PF00158 Sigma54_activat: Sigm 94.0 0.11 2.4E-06 49.7 5.9 45 159-203 1-45 (168)
350 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.042 9.1E-07 54.9 3.2 23 180-202 29-51 (213)
351 TIGR01360 aden_kin_iso1 adenyl 94.0 0.04 8.6E-07 54.0 2.9 24 179-202 2-25 (188)
352 PRK00625 shikimate kinase; Pro 94.0 0.033 7.1E-07 53.5 2.2 21 182-202 2-22 (173)
353 PRK10820 DNA-binding transcrip 93.9 0.18 3.9E-06 57.8 8.6 46 157-202 204-249 (520)
354 PRK13531 regulatory ATPase Rav 93.9 0.045 9.8E-07 60.5 3.4 42 157-202 20-61 (498)
355 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.31 6.8E-06 49.7 9.4 58 169-232 10-67 (237)
356 PRK09280 F0F1 ATP synthase sub 93.8 0.12 2.7E-06 57.0 6.6 95 180-277 144-250 (463)
357 PF01583 APS_kinase: Adenylyls 93.8 0.056 1.2E-06 50.5 3.4 36 180-217 2-37 (156)
358 cd02023 UMPK Uridine monophosp 93.8 0.037 8E-07 54.8 2.3 21 182-202 1-21 (198)
359 cd01122 GP4d_helicase GP4d_hel 93.7 0.59 1.3E-05 48.8 11.5 54 180-239 30-84 (271)
360 cd01136 ATPase_flagellum-secre 93.7 0.28 6.2E-06 52.0 8.9 92 180-277 69-171 (326)
361 PF00006 ATP-synt_ab: ATP synt 93.7 0.086 1.9E-06 52.4 4.8 91 181-277 16-117 (215)
362 COG1124 DppF ABC-type dipeptid 93.7 0.072 1.6E-06 52.8 4.1 23 180-202 33-55 (252)
363 COG1126 GlnQ ABC-type polar am 93.7 0.44 9.5E-06 46.5 9.2 125 180-307 28-200 (240)
364 cd02024 NRK1 Nicotinamide ribo 93.7 0.035 7.6E-07 53.9 1.9 21 182-202 1-21 (187)
365 PRK12726 flagellar biosynthesi 93.7 0.56 1.2E-05 50.4 10.8 100 179-286 205-310 (407)
366 KOG0473 Leucine-rich repeat pr 93.6 0.0037 8.1E-08 60.6 -4.8 88 514-602 36-123 (326)
367 KOG0729 26S proteasome regulat 93.6 0.12 2.7E-06 51.2 5.5 52 157-210 177-239 (435)
368 PLN02318 phosphoribulokinase/u 93.6 0.079 1.7E-06 59.7 4.7 33 170-202 55-87 (656)
369 PRK05922 type III secretion sy 93.6 0.27 5.8E-06 54.1 8.7 92 180-277 157-259 (434)
370 PRK05201 hslU ATP-dependent pr 93.6 0.1 2.2E-06 56.6 5.3 46 157-202 15-72 (443)
371 cd01129 PulE-GspE PulE/GspE Th 93.5 0.21 4.6E-06 51.7 7.5 106 160-283 62-167 (264)
372 COG0542 clpA ATP-binding subun 93.5 0.066 1.4E-06 62.4 4.0 44 157-202 170-213 (786)
373 TIGR03305 alt_F1F0_F1_bet alte 93.5 0.12 2.7E-06 56.8 6.0 102 180-284 138-252 (449)
374 cd02028 UMPK_like Uridine mono 93.5 0.053 1.2E-06 52.6 2.8 21 182-202 1-21 (179)
375 TIGR03498 FliI_clade3 flagella 93.5 0.16 3.4E-06 55.8 6.7 92 180-277 140-242 (418)
376 TIGR01040 V-ATPase_V1_B V-type 93.5 0.19 4.1E-06 55.3 7.2 103 180-284 141-267 (466)
377 PF05659 RPW8: Arabidopsis bro 93.4 0.39 8.5E-06 44.5 8.2 105 3-124 9-115 (147)
378 PF12775 AAA_7: P-loop contain 93.4 0.12 2.6E-06 53.8 5.4 91 166-277 22-112 (272)
379 COG0563 Adk Adenylate kinase a 93.4 0.095 2.1E-06 50.6 4.4 22 182-203 2-23 (178)
380 TIGR02322 phosphon_PhnN phosph 93.4 0.052 1.1E-06 52.8 2.6 22 181-202 2-23 (179)
381 cd01132 F1_ATPase_alpha F1 ATP 93.4 0.3 6.4E-06 50.2 8.1 101 180-286 69-183 (274)
382 PRK13947 shikimate kinase; Pro 93.4 0.047 1E-06 52.6 2.2 21 182-202 3-23 (171)
383 KOG1532 GTPase XAB1, interacts 93.4 0.056 1.2E-06 53.9 2.7 58 179-239 18-85 (366)
384 PRK10751 molybdopterin-guanine 93.4 0.067 1.4E-06 51.1 3.2 24 179-202 5-28 (173)
385 PRK00131 aroK shikimate kinase 93.4 0.051 1.1E-06 52.4 2.5 23 180-202 4-26 (175)
386 COG1066 Sms Predicted ATP-depe 93.4 0.25 5.5E-06 52.7 7.6 102 164-276 77-179 (456)
387 COG1419 FlhF Flagellar GTP-bin 93.4 0.66 1.4E-05 49.9 10.8 37 180-217 203-240 (407)
388 cd01130 VirB11-like_ATPase Typ 93.4 0.11 2.4E-06 50.8 4.8 97 180-286 25-121 (186)
389 PRK07594 type III secretion sy 93.4 0.23 5E-06 54.6 7.7 92 180-277 155-257 (433)
390 cd03282 ABC_MSH4_euk MutS4 hom 93.3 0.081 1.8E-06 52.4 3.8 118 180-307 29-155 (204)
391 PRK11388 DNA-binding transcrip 93.3 0.24 5.2E-06 58.7 8.4 47 157-203 325-371 (638)
392 COG0003 ArsA Predicted ATPase 93.3 0.094 2E-06 55.4 4.4 48 180-231 2-49 (322)
393 PRK06217 hypothetical protein; 93.2 0.05 1.1E-06 53.1 2.2 22 182-203 3-24 (183)
394 PRK06936 type III secretion sy 93.2 0.29 6.2E-06 53.9 8.1 99 180-284 162-272 (439)
395 TIGR03263 guanyl_kin guanylate 93.2 0.064 1.4E-06 52.1 2.8 22 181-202 2-23 (180)
396 TIGR01313 therm_gnt_kin carboh 93.2 0.43 9.3E-06 45.4 8.6 20 183-202 1-20 (163)
397 cd00071 GMPK Guanosine monopho 93.2 0.065 1.4E-06 49.4 2.7 21 182-202 1-21 (137)
398 PF14516 AAA_35: AAA-like doma 93.2 0.61 1.3E-05 50.2 10.5 113 157-277 11-139 (331)
399 PRK00889 adenylylsulfate kinas 93.2 0.075 1.6E-06 51.4 3.3 23 180-202 4-26 (175)
400 PRK09099 type III secretion sy 93.1 0.25 5.5E-06 54.5 7.6 92 180-277 163-265 (441)
401 COG3640 CooC CO dehydrogenase 93.1 0.11 2.5E-06 51.0 4.3 42 182-227 2-44 (255)
402 PF03205 MobB: Molybdopterin g 93.1 0.063 1.4E-06 49.6 2.5 35 181-217 1-36 (140)
403 TIGR03881 KaiC_arch_4 KaiC dom 93.1 0.6 1.3E-05 47.3 10.0 45 171-217 11-55 (229)
404 PF13306 LRR_5: Leucine rich r 93.1 0.14 3E-06 46.4 4.9 83 514-599 6-90 (129)
405 cd03243 ABC_MutS_homologs The 93.1 0.052 1.1E-06 53.9 2.1 22 181-202 30-51 (202)
406 cd03213 ABCG_EPDR ABCG transpo 93.1 0.49 1.1E-05 46.5 9.0 23 180-202 35-57 (194)
407 TIGR03497 FliI_clade2 flagella 93.0 0.24 5.2E-06 54.5 7.2 92 180-277 137-239 (413)
408 PRK12678 transcription termina 93.0 0.15 3.2E-06 57.2 5.5 93 181-277 417-515 (672)
409 cd04159 Arl10_like Arl10-like 93.0 0.42 9E-06 44.7 8.2 21 183-203 2-22 (159)
410 PRK09519 recA DNA recombinatio 93.0 0.35 7.7E-06 57.0 8.9 99 168-275 47-148 (790)
411 COG4088 Predicted nucleotide k 93.0 0.092 2E-06 50.4 3.4 27 181-209 2-28 (261)
412 KOG1051 Chaperone HSP104 and r 92.9 0.44 9.6E-06 56.6 9.6 105 157-278 562-673 (898)
413 PRK13949 shikimate kinase; Pro 92.9 0.063 1.4E-06 51.5 2.3 22 181-202 2-23 (169)
414 cd03217 ABC_FeS_Assembly ABC-t 92.9 0.39 8.5E-06 47.5 8.1 24 180-203 26-49 (200)
415 TIGR00554 panK_bact pantothena 92.9 0.081 1.8E-06 55.2 3.2 24 179-202 61-84 (290)
416 PRK05439 pantothenate kinase; 92.9 0.13 2.8E-06 54.1 4.7 25 178-202 84-108 (311)
417 PF00910 RNA_helicase: RNA hel 92.9 0.064 1.4E-06 47.1 2.1 20 183-202 1-20 (107)
418 cd02020 CMPK Cytidine monophos 92.8 0.065 1.4E-06 50.0 2.3 21 182-202 1-21 (147)
419 PRK11823 DNA repair protein Ra 92.8 0.43 9.2E-06 53.5 9.1 99 167-275 67-166 (446)
420 TIGR02788 VirB11 P-type DNA tr 92.8 0.2 4.4E-06 53.2 6.3 113 180-306 144-256 (308)
421 PRK10923 glnG nitrogen regulat 92.8 0.4 8.7E-06 54.6 9.1 47 157-203 138-184 (469)
422 COG1102 Cmk Cytidylate kinase 92.8 0.072 1.6E-06 49.1 2.4 44 182-240 2-45 (179)
423 PRK03846 adenylylsulfate kinas 92.8 0.09 2E-06 52.0 3.3 25 178-202 22-46 (198)
424 TIGR03575 selen_PSTK_euk L-ser 92.8 0.38 8.3E-06 51.3 8.1 20 183-202 2-21 (340)
425 PTZ00185 ATPase alpha subunit; 92.7 0.39 8.5E-06 53.3 8.2 101 181-283 190-308 (574)
426 PF00625 Guanylate_kin: Guanyl 92.7 0.097 2.1E-06 51.1 3.4 36 180-217 2-37 (183)
427 PRK07721 fliI flagellum-specif 92.7 0.43 9.3E-06 53.0 8.7 23 180-202 158-180 (438)
428 PRK05688 fliI flagellum-specif 92.7 0.36 7.9E-06 53.3 8.0 92 180-277 168-270 (451)
429 TIGR00416 sms DNA repair prote 92.7 0.4 8.8E-06 53.7 8.6 101 165-275 79-180 (454)
430 PRK07196 fliI flagellum-specif 92.6 0.36 7.9E-06 53.1 7.9 92 180-277 155-257 (434)
431 TIGR00073 hypB hydrogenase acc 92.6 0.21 4.6E-06 49.7 5.7 37 178-217 20-56 (207)
432 KOG3864 Uncharacterized conser 92.6 0.024 5.2E-07 54.2 -1.0 65 734-798 120-187 (221)
433 PRK10078 ribose 1,5-bisphospho 92.6 0.086 1.9E-06 51.6 2.8 23 181-203 3-25 (186)
434 PRK04328 hypothetical protein; 92.6 0.42 9.2E-06 49.1 8.0 50 170-223 13-62 (249)
435 cd00227 CPT Chloramphenicol (C 92.6 0.084 1.8E-06 51.1 2.7 22 181-202 3-24 (175)
436 PTZ00088 adenylate kinase 1; P 92.6 0.12 2.6E-06 52.1 3.9 20 183-202 9-28 (229)
437 PRK14738 gmk guanylate kinase; 92.6 0.096 2.1E-06 52.1 3.2 29 174-202 7-35 (206)
438 TIGR03496 FliI_clade1 flagella 92.6 0.31 6.6E-06 53.6 7.2 92 180-277 137-239 (411)
439 TIGR01041 ATP_syn_B_arch ATP s 92.6 0.33 7.1E-06 53.9 7.5 102 181-284 142-258 (458)
440 PRK00300 gmk guanylate kinase; 92.5 0.08 1.7E-06 52.7 2.6 24 180-203 5-28 (205)
441 COG2842 Uncharacterized ATPase 92.5 0.72 1.6E-05 47.3 9.2 118 157-289 72-191 (297)
442 COG2019 AdkA Archaeal adenylat 92.5 0.1 2.3E-06 48.3 2.9 23 180-202 4-26 (189)
443 TIGR00455 apsK adenylylsulfate 92.5 0.74 1.6E-05 44.8 9.3 23 180-202 18-40 (184)
444 COG0467 RAD55 RecA-superfamily 92.4 0.14 3E-06 53.1 4.2 45 175-223 18-62 (260)
445 cd00820 PEPCK_HprK Phosphoenol 92.4 0.11 2.5E-06 45.0 2.9 22 180-201 15-36 (107)
446 PRK00409 recombination and DNA 92.4 0.43 9.3E-06 57.3 8.8 120 179-307 326-454 (782)
447 PF03308 ArgK: ArgK protein; 92.3 0.14 3.1E-06 51.5 4.0 65 165-231 14-78 (266)
448 PF13504 LRR_7: Leucine rich r 92.3 0.075 1.6E-06 29.2 1.1 15 544-558 2-16 (17)
449 cd00464 SK Shikimate kinase (S 92.3 0.096 2.1E-06 49.3 2.6 20 183-202 2-21 (154)
450 TIGR03324 alt_F1F0_F1_al alter 92.3 0.38 8.3E-06 53.6 7.6 99 180-284 162-274 (497)
451 PRK06793 fliI flagellum-specif 92.2 0.52 1.1E-05 51.9 8.5 120 180-307 156-290 (432)
452 PF08477 Miro: Miro-like prote 92.2 0.11 2.3E-06 46.5 2.7 21 183-203 2-22 (119)
453 PRK05057 aroK shikimate kinase 92.2 0.091 2E-06 50.6 2.4 23 180-202 4-26 (172)
454 PRK08472 fliI flagellum-specif 92.2 0.35 7.5E-06 53.3 7.1 96 180-284 157-266 (434)
455 COG0464 SpoVK ATPases of the A 92.2 0.24 5.3E-06 56.7 6.3 94 157-276 242-346 (494)
456 PRK14493 putative bifunctional 92.1 0.11 2.4E-06 53.8 3.1 34 181-217 2-35 (274)
457 PRK13975 thymidylate kinase; P 92.1 0.098 2.1E-06 51.6 2.6 22 181-202 3-24 (196)
458 TIGR01039 atpD ATP synthase, F 92.1 0.34 7.3E-06 53.5 6.9 101 180-284 143-257 (461)
459 PRK13948 shikimate kinase; Pro 92.1 0.1 2.2E-06 50.6 2.6 24 179-202 9-32 (182)
460 PRK13946 shikimate kinase; Pro 92.0 0.093 2E-06 51.2 2.3 23 180-202 10-32 (184)
461 PHA02244 ATPase-like protein 92.0 0.15 3.3E-06 54.4 4.0 42 157-202 96-141 (383)
462 TIGR01420 pilT_fam pilus retra 92.0 0.38 8.1E-06 52.1 7.1 113 180-307 122-234 (343)
463 PRK12339 2-phosphoglycerate ki 91.9 0.12 2.6E-06 50.8 2.9 23 180-202 3-25 (197)
464 TIGR01287 nifH nitrogenase iro 91.9 0.099 2.1E-06 54.8 2.5 22 181-202 1-22 (275)
465 COG1936 Predicted nucleotide k 91.9 0.12 2.6E-06 48.4 2.6 20 182-201 2-21 (180)
466 KOG0927 Predicted transporter 91.9 0.81 1.7E-05 50.6 9.2 32 180-211 101-133 (614)
467 PRK14530 adenylate kinase; Pro 91.9 0.11 2.4E-06 52.1 2.7 21 182-202 5-25 (215)
468 PF00005 ABC_tran: ABC transpo 91.9 0.14 3E-06 47.2 3.1 23 181-203 12-34 (137)
469 PF06309 Torsin: Torsin; Inte 91.9 0.18 3.9E-06 44.9 3.6 46 157-202 25-75 (127)
470 PF13504 LRR_7: Leucine rich r 91.9 0.097 2.1E-06 28.8 1.2 16 568-583 2-17 (17)
471 TIGR00176 mobB molybdopterin-g 91.8 0.11 2.3E-06 49.1 2.3 32 182-215 1-33 (155)
472 cd01672 TMPK Thymidine monopho 91.8 0.27 5.8E-06 48.5 5.3 21 182-202 2-22 (200)
473 TIGR01026 fliI_yscN ATPase Fli 91.8 0.41 9E-06 53.1 7.2 24 180-203 163-186 (440)
474 COG0237 CoaE Dephospho-CoA kin 91.8 0.13 2.8E-06 50.6 2.9 23 180-202 2-24 (201)
475 COG1100 GTPase SAR1 and relate 91.8 0.12 2.5E-06 52.0 2.7 23 181-203 6-28 (219)
476 cd01134 V_A-ATPase_A V/A-type 91.8 0.59 1.3E-05 49.5 7.8 48 181-234 158-206 (369)
477 COG1120 FepC ABC-type cobalami 91.8 0.21 4.6E-06 50.7 4.5 35 180-217 28-62 (258)
478 PF06068 TIP49: TIP49 C-termin 91.7 0.25 5.5E-06 52.3 5.1 58 157-216 24-84 (398)
479 KOG0927 Predicted transporter 91.7 2.1 4.6E-05 47.5 12.1 140 160-302 397-565 (614)
480 PF02374 ArsA_ATPase: Anion-tr 91.6 0.16 3.6E-06 53.7 3.8 46 181-230 2-47 (305)
481 PRK15453 phosphoribulokinase; 91.6 0.83 1.8E-05 47.0 8.6 24 179-202 4-27 (290)
482 PRK13230 nitrogenase reductase 91.6 0.12 2.6E-06 54.2 2.8 22 181-202 2-23 (279)
483 PF08298 AAA_PrkA: PrkA AAA do 91.6 0.17 3.7E-06 53.5 3.7 46 157-202 61-110 (358)
484 PRK09435 membrane ATPase/prote 91.6 0.22 4.8E-06 53.0 4.7 37 166-202 42-78 (332)
485 PF01926 MMR_HSR1: 50S ribosom 91.6 0.15 3.2E-06 45.4 3.0 21 183-203 2-22 (116)
486 PLN02348 phosphoribulokinase 91.6 0.2 4.3E-06 54.0 4.3 26 177-202 46-71 (395)
487 cd01878 HflX HflX subfamily. 91.6 0.35 7.6E-06 48.0 5.9 24 180-203 41-64 (204)
488 TIGR02030 BchI-ChlI magnesium 91.6 0.16 3.4E-06 54.4 3.5 44 157-202 4-47 (337)
489 COG1224 TIP49 DNA helicase TIP 91.6 0.21 4.6E-06 52.0 4.2 47 157-203 39-88 (450)
490 TIGR00764 lon_rel lon-related 91.6 0.3 6.5E-06 56.9 6.1 74 157-239 18-92 (608)
491 COG1703 ArgK Putative periplas 91.5 0.19 4E-06 51.4 3.7 68 166-235 37-104 (323)
492 KOG0739 AAA+-type ATPase [Post 91.5 0.46 1E-05 48.2 6.4 93 157-276 133-236 (439)
493 COG3267 ExeA Type II secretory 91.5 1.7 3.6E-05 43.7 10.2 100 179-285 50-153 (269)
494 PRK14737 gmk guanylate kinase; 91.5 0.15 3.2E-06 49.8 3.0 25 179-203 3-27 (186)
495 cd02117 NifH_like This family 91.5 0.13 2.8E-06 51.6 2.6 22 181-202 1-22 (212)
496 cd04139 RalA_RalB RalA/RalB su 91.4 0.15 3.2E-06 48.3 3.0 22 182-203 2-23 (164)
497 TIGR00750 lao LAO/AO transport 91.4 0.19 4.1E-06 53.3 4.0 37 166-202 20-56 (300)
498 PRK06820 type III secretion sy 91.4 0.87 1.9E-05 50.3 9.2 23 180-202 163-185 (440)
499 TIGR02782 TrbB_P P-type conjug 91.4 0.52 1.1E-05 49.8 7.2 97 181-294 133-232 (299)
500 COG1763 MobB Molybdopterin-gua 91.4 0.17 3.7E-06 47.5 3.2 36 180-217 2-37 (161)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-88 Score=786.13 Aligned_cols=747 Identities=26% Similarity=0.352 Sum_probs=568.8
Q ss_pred CcchHHHHHHHHHHhhcccccccchhchhhHHHHHHHHHHHHHHHHhchhhhhhhhhhhccCccCCChhHHHHHHHHHHH
Q 003399 1 MDINFRLFFERLGRVLAGEEVTLPDAAKQPIQNLHAESEIVTSWLREFEDDISCLLMQKIGEVEIDDPDLGNIMDEINFF 80 (823)
Q Consensus 1 m~~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~ 80 (823)
|+|.++..++|+.+++. +++....+.++.+..|++.|..++.+++||++ ++ .+...+..|...++++
T Consensus 1 ~~~~~s~~~~~~~~~l~-~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a------~~------~~~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLN-RESECLDGKDNYILELKENLKALQSALEDLDA------KR------DDLERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEehhhHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh------hc------chHHHHHHHHHHHHHH
Confidence 67888889999999999 99999999999999999999999999999999 88 8889999999999999
Q ss_pred hhhhHHHHhHhHhhhhcccCC-----C----------CcHHHHHHHhhhHHHHHHHHHHHhhhccccccccccc-----c
Q 003399 81 TYESEKVIDTFINSISEQKSQ-----S----------SCSEDIFDALQGPQSRITDIKQRMQQLKHMDSKIIDR-----I 140 (823)
Q Consensus 81 ~~d~ed~ld~~~~~~~~~~~~-----~----------~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~ 140 (823)
+|++||.++.|..+....... + ++++..+..+..+.+++..+.+..+.+. ........ +
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~~~~~~~~~~~~~~ 146 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLG-SKGVFEVVGESLDP 146 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhc-cccceecccccccc
Confidence 999999999998776553210 1 3336777777788888888888877776 43311111 1
Q ss_pred cccccccCCCCCCCCCCCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcc-cccCcceeEEEeCC
Q 003399 141 KTFEAEYGYFPASSKSRDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSY-VKHYFDCHAWISEP 219 (823)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~ 219 (823)
...+++ .|...+ .. ||.+..++++.+.|..++ ..++||+||||+||||||+.++|+.. ++.+||.++||+
T Consensus 147 ~~~~e~---~~~~~~-~~-VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-- 217 (889)
T KOG4658|consen 147 REKVET---RPIQSE-SD-VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-- 217 (889)
T ss_pred hhhccc---CCCCcc-cc-ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE--
Confidence 122334 455545 45 999999999999999887 49999999999999999999999977 999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEe
Q 003399 220 YSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLIT 299 (823)
Q Consensus 220 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivT 299 (823)
||+.|+..+++++|+..++..... ....+.++.+..|.+.|++|||+|||||||+..+|+.++.++|...+||||++|
T Consensus 218 VSk~f~~~~iq~~Il~~l~~~~~~--~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlT 295 (889)
T KOG4658|consen 218 VSKEFTTRKIQQTILERLGLLDEE--WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLT 295 (889)
T ss_pred EcccccHHhHHHHHHHHhccCCcc--cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEE
Confidence 999999999999999999884321 344455899999999999999999999999999999999999999999999999
Q ss_pred eCcchhhhc-c-----------------------cccCCCCCCCChhhhHHhHHHHcCCcceeeee-------------e
Q 003399 300 LTDIEMVTS-F-----------------------QLEDGENIRLDLVPTGGPLRATYKGWPFFILY-------------H 342 (823)
Q Consensus 300 TR~~~v~~~-~-----------------------~f~~~~~~~~~~~~~~~~i~~~c~GlPLai~~-------------~ 342 (823)
||++.||.. . +|.......+.++++|++|+++|+|+|||+++ |
T Consensus 296 TRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW 375 (889)
T KOG4658|consen 296 TRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEW 375 (889)
T ss_pred eccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHH
Confidence 999999981 1 33332233455899999999999999999999 2
Q ss_pred cc----ccccccc---CCcCCHHHHHHhcccCCCCCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCCC-----ChHH
Q 003399 343 GS----ISLEENI---GEAVEIPLVLRYFKYCSLPFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPD-----NSEA 410 (823)
Q Consensus 343 ~~----~~~~~~~---~~~~~i~~~l~~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~-----~~~~ 410 (823)
+. +.+.+.. ...+.++++| ++|||.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+ .+++
T Consensus 376 ~~~~~~l~s~~~~~~~~~~~~i~~iL-klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d 454 (889)
T KOG4658|consen 376 RRALNVLKSSLAADFSGMEESILPIL-KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAED 454 (889)
T ss_pred HHHHccccccccCCCCchhhhhHHhh-hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhc
Confidence 22 2222121 2467899999 99999999889999999999999999999999999999999976 7789
Q ss_pred HHHHHHHHHHhcCceeeeecCCCCcEeeEEcCcchHHHHHhcCC-----cCCeeecCCC------CCCCCCCceEEEEEE
Q 003399 411 TAESYLEQLIKEGFVEAKKRKAGGTINTCSIPGCWRPVLLLVPP-----EVEFIFSPSI------DRGSGKNAKRLNAVE 479 (823)
Q Consensus 411 ~~~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~a~~~~~-----~~~~~~~~~~------~~~~~~~~r~l~sl~ 479 (823)
.|++|+++|++++|+...... ++..+|+|||+||++|.++++ +++.+...+. ....+..+||+ +++
T Consensus 455 ~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~-s~~ 531 (889)
T KOG4658|consen 455 VGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM-SLM 531 (889)
T ss_pred chHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEE-EEe
Confidence 999999999999999987754 566899999999999999999 6665544321 12345678999 999
Q ss_pred cCCcccccccc-CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCC-CccccccccCccccceeeccCCCCcc
Q 003399 480 RWDDFACLDDY-DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIPSLKS 557 (823)
Q Consensus 480 ~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-l~~lp~~i~~L~~Lr~L~L~~~~i~~ 557 (823)
++......... +++|+||.+..+... .......+|..|+.||||||++|. +.++|++|++|.|||||++++|.+..
T Consensus 532 ~~~~~~~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~ 609 (889)
T KOG4658|consen 532 NNKIEHIAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH 609 (889)
T ss_pred ccchhhccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc
Confidence 98887776666 899999999998630 134566889999999999999887 78999999999999999999999999
Q ss_pred cchhhhhcCCCccEEeCCCC-cccccchhhcCCCCCceeeccCcccCCCC--CCCcCCCcccceeeccCCCc-ccccccC
Q 003399 558 LPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLPAHP--GKYCGSLENLNFISALHPCC-CTEDILG 633 (823)
Q Consensus 558 lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~--~~~i~~L~~L~~l~~~~~~~-~~~~~l~ 633 (823)
||.++ ++|..|++||+..+ .+..+|..+..|.+||+|.+......... ...+.+|++|+.+.+..... .+.. +.
T Consensus 610 LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~-l~ 687 (889)
T KOG4658|consen 610 LPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLED-LL 687 (889)
T ss_pred cchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhh-hh
Confidence 99999 99999999999998 56666666777999999988765422211 22445577777666653222 2233 55
Q ss_pred CCCccceEEeecc-cccchhhHHHhhcCCCCCcEEEeecCCC----------------CCCCcEEeeCCc---------C
Q 003399 634 RLPNLRNLRIQGD-LSYNQSLLSKSLCRLSCLESLKLANESK----------------MPRLSKIALAEY---------L 687 (823)
Q Consensus 634 ~l~~L~~L~i~~~-~~~~~~~l~~~l~~l~~L~~L~l~~~~~----------------~~~L~~L~l~~~---------~ 687 (823)
.++.|..+.+.-+ ........+.++..+.+|+.|.+..+.. ++++..+.+..+ .
T Consensus 688 ~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 5555553332222 1124455566778888888888886431 112222222222 3
Q ss_pred cccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecc----cccc
Q 003399 688 FPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGN----AAMP 763 (823)
Q Consensus 688 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~----~~lp 763 (823)
+.++|+.|.+..|...+++++....+..+..+.+..+.+.+-......++||++..+.+.+.. ++.|.... +.+|
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLP 846 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hhheehhcCcccccCc
Confidence 456777777777766666666666666666655554555443234445555555555555432 44444333 4455
Q ss_pred cccEEEeecC-CCCCCCch
Q 003399 764 KLECLIINPC-AYLKKMPE 781 (823)
Q Consensus 764 ~L~~L~i~~C-~~l~~lp~ 781 (823)
.+.++.+.+| +++..+|+
T Consensus 847 ~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 847 LLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred cccccceeccccceeecCC
Confidence 5555555554 44444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.4e-61 Score=589.82 Aligned_cols=602 Identities=16% Similarity=0.167 Sum_probs=367.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-CCCCC-----------C
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-PYSNE-----------Y 224 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~-----------~ 224 (823)
+++|||++.++++..+|..+..++++|+||||||+||||||+++|+ ++..+|+..+|+.+ .++.. +
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccccc
Confidence 6899999999999999977767899999999999999999999999 78899999988752 01111 1
Q ss_pred C-HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcc
Q 003399 225 D-ADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDI 303 (823)
Q Consensus 225 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~ 303 (823)
+ ...++++++.++....+ ..... ...+++.|++||+||||||||+.++|+.+.....+.++||+||||||++
T Consensus 262 ~~~~~l~~~~l~~il~~~~---~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKD---IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred chhHHHHHHHHHHHhCCCC---cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 1 23566777777655432 11111 2457888999999999999999999999998888889999999999999
Q ss_pred hhhh-c-----c-----------------cccCCCCCCCChhhhHHhHHHHcCCcceeeee------------ecccccc
Q 003399 304 EMVT-S-----F-----------------QLEDGENIRLDLVPTGGPLRATYKGWPFFILY------------HGSISLE 348 (823)
Q Consensus 304 ~v~~-~-----~-----------------~f~~~~~~~~~~~~~~~~i~~~c~GlPLai~~------------~~~~~~~ 348 (823)
+++. + + ||+.. ..+.++.+++++|+++|+|+|||+++ |......
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~ 413 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR 413 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9875 1 1 66553 34556889999999999999999999 2222222
Q ss_pred cccCCcCCHHHHHHhcccCCCCCC-chhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceee
Q 003399 349 ENIGEAVEIPLVLRYFKYCSLPFC-LKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEA 427 (823)
Q Consensus 349 ~~~~~~~~i~~~l~~~sy~~L~~~-~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~~ 427 (823)
+.......|.++| ++||+.|+++ .|.||++||+||.+..++ .+..|.+.+... ++..++.|+++||++.
T Consensus 414 L~~~~~~~I~~~L-~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksLi~~ 483 (1153)
T PLN03210 414 LRNGLDGKIEKTL-RVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSLIHV 483 (1153)
T ss_pred HHhCccHHHHHHH-HHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCCEEE
Confidence 3223456799999 9999999875 999999999999987654 467788876553 3445899999999987
Q ss_pred eecCCCCcEeeEEcCcchHHHHHhcCCcCC-------eeec-CCC-----CCCCCCCceEEEEEEcCCcccc---cccc-
Q 003399 428 KKRKAGGTINTCSIPGCWRPVLLLVPPEVE-------FIFS-PSI-----DRGSGKNAKRLNAVERWDDFAC---LDDY- 490 (823)
Q Consensus 428 ~~~~~~g~~~~~~mHdlv~d~a~~~~~~~~-------~~~~-~~~-----~~~~~~~~r~l~sl~~~~~~~~---~~~~- 490 (823)
.. ..++|||++|+||+.++.++. +... .+. ......+++++ ++........ ....
T Consensus 484 ~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i-~l~~~~~~~~~i~~~aF~ 555 (1153)
T PLN03210 484 RE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGI-TLDIDEIDELHIHENAFK 555 (1153)
T ss_pred cC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEE-EeccCccceeeecHHHHh
Confidence 53 369999999999999986553 1111 000 01123456666 6653332211 1111
Q ss_pred -CCCccEEEeecCCCC---CCCccchHHHhcCC-CcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhc
Q 003399 491 -DSQLHSFLCCSPESR---HIDPIDWEKIYGMF-KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSN 565 (823)
Q Consensus 491 -~~~LrsL~~~~~~~~---~~~~~~~~~~~~~~-~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~ 565 (823)
+++|+.|.+...... .....++ ..|..+ +.||.|++.++.+..+|..+ .+.+|++|+++++.+..+|..+ ..
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~~ 632 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-HS 632 (1153)
T ss_pred cCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc-cc
Confidence 667777766543210 0000111 112222 23555555555555555444 2344555555555444444444 44
Q ss_pred CCCccEEeCCCC-cccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccC--CCcccccccCCCCccceEE
Q 003399 566 LLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALH--PCCCTEDILGRLPNLRNLR 642 (823)
Q Consensus 566 L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~ 642 (823)
+++|+.|+|++| .+..+|. +..+++|+.|++++|......+..+++|++|..+++.. ....++. ..++++|+.|.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~i~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-GINLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-cCCCCCCCEEe
Confidence 555555555444 3344442 44444555555544433222222444444444444431 1112222 11344444444
Q ss_pred eecccccchhhHHHhhcCCCCCcEEEeecCC--------CCCCCcEEeeCCc-----------------CcccCccEeEe
Q 003399 643 IQGDLSYNQSLLSKSLCRLSCLESLKLANES--------KMPRLSKIALAEY-----------------LFPHSLTHLSF 697 (823)
Q Consensus 643 i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l~~~-----------------~~~~~L~~L~L 697 (823)
+++|. ....+|.. ..+|+.|+++++. ..++|..|.+.++ ..+++|+.|+|
T Consensus 711 Lsgc~--~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 711 LSGCS--RLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCCCC--Cccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 44443 12222211 1233344433321 1122222222221 11345555555
Q ss_pred ecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCC--------------------CCcceee
Q 003399 698 SNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML--------------------WLEEWTM 757 (823)
Q Consensus 698 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~--------------------~l~~~~~ 757 (823)
++|......+..++++++|+.|+|++|.... .+|... .+++|+.|+|++|. .++.+|.
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLE-TLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcC-eeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChH
Confidence 5554444445555555555555555443222 122221 34444444444443 3455566
Q ss_pred cccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 758 GNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 758 ~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
.++.+++|+.|++.+|++++.+|..+..+++|+.+++++|+
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 67789999999999999999999988999999999999997
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-38 Score=338.21 Aligned_cols=241 Identities=28% Similarity=0.438 Sum_probs=189.6
Q ss_pred ccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCC
Q 003399 162 LDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSS 241 (823)
Q Consensus 162 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~ 241 (823)
||.++++|.+.|....++.++|+|+||||+||||||+++|++.+++.+|+.++|+. ++...+..+++..|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~--~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS--LSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE--EES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc--cccccccccccccccccccccc
Confidence 68899999999999667799999999999999999999999766999999999999 9999999999999999999863
Q ss_pred CCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh---c----c-----
Q 003399 242 RLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT---S----F----- 309 (823)
Q Consensus 242 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~---~----~----- 309 (823)
... ....+.++....+++.|+++++||||||||+...|+.+...++.+..||+||||||+..++. . +
T Consensus 79 ~~~-~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 79 SSI-SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPL 157 (287)
T ss_dssp STS-SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS-
T ss_pred ccc-ccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 211 14567888999999999999999999999999999999988888888999999999999886 1 1
Q ss_pred -------ccc-----CCCCCCCChhhhHHhHHHHcCCcceeeee-------------eccccccccc------CCcCCHH
Q 003399 310 -------QLE-----DGENIRLDLVPTGGPLRATYKGWPFFILY-------------HGSISLEENI------GEAVEIP 358 (823)
Q Consensus 310 -------~f~-----~~~~~~~~~~~~~~~i~~~c~GlPLai~~-------------~~~~~~~~~~------~~~~~i~ 358 (823)
+|. ......+.+.+.+++|+++|+|+|||+++ |......+.. .....+.
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 222 21123466788999999999999999988 1111111111 1356799
Q ss_pred HHHHhcccCCCCCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCCC
Q 003399 359 LVLRYFKYCSLPFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPD 406 (823)
Q Consensus 359 ~~l~~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~ 406 (823)
.++ .+||+.||++.|+||+|||+||+++.|+++.++++|+++||++.
T Consensus 238 ~~l-~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 238 SAL-ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHH-HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccc-eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999 99999999999999999999999999999999999999999953
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=4.6e-23 Score=255.53 Aligned_cols=320 Identities=17% Similarity=0.137 Sum_probs=160.4
Q ss_pred CceEEEEEEcCCccccc-ccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc-cccccccCccccc
Q 003399 471 NAKRLNAVERWDDFACL-DDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-QYPSGIENLFLLR 546 (823)
Q Consensus 471 ~~r~l~sl~~~~~~~~~-~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-~lp~~i~~L~~Lr 546 (823)
.++.+ .+..+...... ... +++|++|.+.++... ..++...+..+++||+|+|++|.+. .+|. +.+.+|+
T Consensus 70 ~v~~L-~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 70 RVVSI-DLSGKNISGKISSAIFRLPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred cEEEE-EecCCCccccCChHHhCCCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 46666 66554332211 111 677777777665432 2334445556666666666666554 3332 3345555
Q ss_pred eeeccCCCCc-ccchhhhhcCCCccEEeCCCCccc-ccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC
Q 003399 547 YLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP 624 (823)
Q Consensus 547 ~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~ 624 (823)
+|+|++|.+. .+|..+ +++++|++|++++|.+. .+|..++++++|++|++++|.+....+..++++.+|+.+++..+
T Consensus 144 ~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred EEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 5555555544 344444 55555555555555433 34445555555555555555444332224444444544444421
Q ss_pred C--cccccccCCCCccceEEeecccc----------------------cchhhHHHhhcCCCCCcEEEeecCC-------
Q 003399 625 C--CCTEDILGRLPNLRNLRIQGDLS----------------------YNQSLLSKSLCRLSCLESLKLANES------- 673 (823)
Q Consensus 625 ~--~~~~~~l~~l~~L~~L~i~~~~~----------------------~~~~~l~~~l~~l~~L~~L~l~~~~------- 673 (823)
. ..++..++++++|+.|+++++.- .....+|..+.++++|++|++++|.
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 1 12222244445555555444420 0222334444444555555554431
Q ss_pred ---CCCCCcEEeeCCc----------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCc
Q 003399 674 ---KMPRLSKIALAEY----------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPN 740 (823)
Q Consensus 674 ---~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 740 (823)
..++|+.|.+.++ ..+++|+.|++++|.+....+..++.+++|+.|++++|.+.+ .++..+..+++
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~-~~p~~~~~~~~ 381 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-EIPEGLCSSGN 381 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe-eCChhHhCcCC
Confidence 1234444444333 223445555555554444444444555555555555444433 22333344455
Q ss_pred ccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 741 LKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 741 L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
|+.|++++|.....+|..++.+++|+.|++.+|.....+|..+..+++|+.|++++|.
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 5555555554333445555667777777777777666677777778888888887764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2.8e-23 Score=257.36 Aligned_cols=301 Identities=21% Similarity=0.252 Sum_probs=158.6
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc-cccccccCccccceeeccCCCCc-ccchhhhhcCCC
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPSSLLSNLLN 568 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 568 (823)
.++|++|.+.++... ...+..+.++++|++|+|++|.+. .+|..++++.+|++|+|++|.+. .+|..+ +++++
T Consensus 139 l~~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~ 213 (968)
T PLN00113 139 IPNLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKS 213 (968)
T ss_pred cCCCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCC
Confidence 455555555554431 122334555566666666665543 45555566666666666655544 345454 55666
Q ss_pred ccEEeCCCCccc-ccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCC--cccccccCCCCccceEEeec
Q 003399 569 LYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIQG 645 (823)
Q Consensus 569 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~i~~ 645 (823)
|++|+|++|.+. .+|..++++++|++|++++|.+....+..++++.+|+.+.+..+. ..++..+.++++|+.|++++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 666666555444 345555556666666665555543333345555555555544211 11222244455555555544
Q ss_pred ccc----------------------cchhhHHHhhcCCCCCcEEEeecCC----------CCCCCcEEeeCCc-------
Q 003399 646 DLS----------------------YNQSLLSKSLCRLSCLESLKLANES----------KMPRLSKIALAEY------- 686 (823)
Q Consensus 646 ~~~----------------------~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l~~~------- 686 (823)
|.- .....+|..+..+++|+.|++++|. ..++|+.|.+.++
T Consensus 294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 420 0222333444444555555554432 2234444444433
Q ss_pred ---CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccc
Q 003399 687 ---LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMP 763 (823)
Q Consensus 687 ---~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp 763 (823)
..+++|+.|++++|.+....+..++.+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.....++.....+|
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-ECChhHhcCCCCCEEECcCCcccCccChhhccCC
Confidence 123445555555555555555556666666666666665554 2444455666677777766654344444455677
Q ss_pred cccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 764 KLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 764 ~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+|+.|++++|.....+|..+ ..++|+.|++++|.
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred CCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 77777777777666666543 34677777777665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.6e-26 Score=240.70 Aligned_cols=314 Identities=20% Similarity=0.224 Sum_probs=264.8
Q ss_pred CCceEEEEEEcCCcccccccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccce
Q 003399 470 KNAKRLNAVERWDDFACLDDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 547 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~ 547 (823)
++..|| |+..+........+ .|.||++.+..+.... .. .+.-+.+++.|.+||||+|.+.+.|..+.+-+++-.
T Consensus 55 qkLEHL-s~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKn--sG-iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHL-SMAHNQLISVHGELSDLPRLRSVIVRDNNLKN--SG-IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhh-hhhhhhhHhhhhhhccchhhHHHhhhcccccc--CC-CCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 567788 88877655544444 8999999998776532 23 345556899999999999999999999999999999
Q ss_pred eeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC---
Q 003399 548 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP--- 624 (823)
Q Consensus 548 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~--- 624 (823)
|+||+|+|..+|.+++-+|..|-.|||++|.+..+|+.+..|.+|+.|+|++|.+.......+..+++|+.+.+++.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 99999999999999988999999999999999999999999999999999999766544445555666666666632
Q ss_pred CcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCC
Q 003399 625 CCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMD 704 (823)
Q Consensus 625 ~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~ 704 (823)
...++.++..|.||+.++++.+ +...+|..+.++++|+.|+|++| .+++|.... ..-.+|++|+++.|.+ .
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N----~iteL~~~~-~~W~~lEtLNlSrNQL-t 281 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGN----KITELNMTE-GEWENLETLNLSRNQL-T 281 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcC----ceeeeeccH-HHHhhhhhhccccchh-c
Confidence 3345556888999999999987 67788999999999999999876 577765432 3457899999999997 4
Q ss_pred CCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhcc
Q 003399 705 DPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLW 784 (823)
Q Consensus 705 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~ 784 (823)
..|..+.+|+.|+.|.+.+|.++-+.+|.+++.+.+|+.+...++ .++-+|.+++.|+.|+.|.+..+ .|-.+|.++.
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIH 359 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIH 359 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-ceeechhhhh
Confidence 678889999999999999998888889999999999999999976 68888999999999999999855 4777999999
Q ss_pred CCCCCcEEEecCCC
Q 003399 785 CIKSLNKFDCWWPQ 798 (823)
Q Consensus 785 ~l~~L~~L~l~~c~ 798 (823)
-++-|+.|++...|
T Consensus 360 lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENP 373 (1255)
T ss_pred hcCCcceeeccCCc
Confidence 99999999999987
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=2e-21 Score=204.92 Aligned_cols=315 Identities=18% Similarity=0.197 Sum_probs=203.2
Q ss_pred CCceEEEEEEcCCcccccccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCccccc
Q 003399 470 KNAKRLNAVERWDDFACLDDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLR 546 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr 546 (823)
.+...+ .+..+.....+... ..++..|.+..+... ++-...++.++.||+|||+.|.|.++|. ++..-.+++
T Consensus 102 ~nLq~v-~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~----sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 102 PNLQEV-NLNKNELTRIPRFGHESGHLEKLDLRHNLIS----SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred Ccceee-eeccchhhhcccccccccceeEEeeeccccc----cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 345556 66666555554444 667888888777663 3445677888899999999998887764 355557899
Q ss_pred eeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeecc-CC
Q 003399 547 YLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL-HP 624 (823)
Q Consensus 547 ~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~-~~ 624 (823)
+|+|++|.|+.+-..-|.+|.+|-+|.|+.|.++.+|. .+.+|++|+.|+|..|.+.-...-.+..|.+|+.+.+. +.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 99999999988776656888899999999999999975 46669999999998887765433344555556555554 22
Q ss_pred Cccccc-ccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCC
Q 003399 625 CCCTED-ILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLM 703 (823)
Q Consensus 625 ~~~~~~-~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~ 703 (823)
...+.+ .+-.|.++++|++..+. ....-..++.+++.|+.|+++.| .++++.+.+..+.++|+.|+|++|.++
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~N----aI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYN----AIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred cccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchh----hhheeecchhhhcccceeEeccccccc
Confidence 222222 25677888888888764 22222346778888999998875 577777777777888888888888777
Q ss_pred CCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCccee---ecccccccccEEEeecCCCCCCCc
Q 003399 704 DDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT---MGNAAMPKLECLIINPCAYLKKMP 780 (823)
Q Consensus 704 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~lp~L~~L~i~~C~~l~~lp 780 (823)
......+..|..|+.|+|+.|.+.- .....+.++.+|+.|+|.++..--.+. ..+..+|+|++|.+.++. ++++|
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~ 408 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIP 408 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecc
Confidence 7666677777777777777665432 112233445555555555442100111 112235555555555443 44444
Q ss_pred h-hccCCCCCcEEEecCC
Q 003399 781 E-QLWCIKSLNKFDCWWP 797 (823)
Q Consensus 781 ~-~l~~l~~L~~L~l~~c 797 (823)
. .+..+++|++|++.+.
T Consensus 409 krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhccCcccceecCCCC
Confidence 3 3444555555554443
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=7e-18 Score=209.56 Aligned_cols=269 Identities=20% Similarity=0.162 Sum_probs=157.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCC-CcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPS-LKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~-i~~lp~~i~~~L~~L 569 (823)
.++||.|.+.++.... ++..| .+++|+.|++.++.+..+|..+..+.+|++|+|+++. +..+|. + +.+++|
T Consensus 588 p~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~L 659 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNL 659 (1153)
T ss_pred CcccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcc
Confidence 3457777766654322 11222 3466677777766666666666666777777776653 555553 4 666667
Q ss_pred cEEeCCCC-cccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCC--cccccc---------------
Q 003399 570 YTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPC--CCTEDI--------------- 631 (823)
Q Consensus 570 ~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~--~~~~~~--------------- 631 (823)
++|+|++| .+..+|..+.++++|++|++++|......+.++ ++++|+.+.+.... ..+++.
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 77777666 566666666666677777666654322222122 34444444333110 001100
Q ss_pred ----cCCC-------------------------------CccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCC
Q 003399 632 ----LGRL-------------------------------PNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 676 (823)
Q Consensus 632 ----l~~l-------------------------------~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 676 (823)
...+ ++|+.|++++|. ....+|.++.++++|+.|++++| +
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~~lP~si~~L~~L~~L~Ls~C---~ 813 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLVELPSSIQNLHKLEHLEIENC---I 813 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC--CccccChhhhCCCCCCEEECCCC---C
Confidence 0011 233333333332 23334555555555555555532 2
Q ss_pred CCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCccee
Q 003399 677 RLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT 756 (823)
Q Consensus 677 ~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 756 (823)
+++.+... ..+++|+.|+|++|......+. ..++|+.|+|++|.+.. +|..+..+++|+.|++++|+++..++
T Consensus 814 ~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 814 NLETLPTG--INLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CcCeeCCC--CCccccCEEECCCCCccccccc---cccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccC
Confidence 33332211 2466777777777754332222 23577888888776653 67778889999999999999999999
Q ss_pred ecccccccccEEEeecCCCCCCCc
Q 003399 757 MGNAAMPKLECLIINPCAYLKKMP 780 (823)
Q Consensus 757 ~~~~~lp~L~~L~i~~C~~l~~lp 780 (823)
.....+++|+.|.+++|+.|..++
T Consensus 887 ~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cccccccCCCeeecCCCccccccc
Confidence 888999999999999999887553
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=5.3e-20 Score=194.29 Aligned_cols=315 Identities=17% Similarity=0.147 Sum_probs=238.4
Q ss_pred CCCceEEEEEEcCCcccccc-cc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccc
Q 003399 469 GKNAKRLNAVERWDDFACLD-DY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFL 544 (823)
Q Consensus 469 ~~~~r~l~sl~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~ 544 (823)
...+.+| .+.++.+..... .+ .+-||+|.++.+... .+....|..-.+++.|+|++|.|+.+ ...|..+.+
T Consensus 124 sghl~~L-~L~~N~I~sv~se~L~~l~alrslDLSrN~is----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 124 SGHLEKL-DLRHNLISSVTSEELSALPALRSLDLSRNLIS----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred ccceeEE-eeeccccccccHHHHHhHhhhhhhhhhhchhh----cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 4457788 888776654422 22 899999999888763 34556777888999999999999866 456888899
Q ss_pred cceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccC
Q 003399 545 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALH 623 (823)
Q Consensus 545 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~ 623 (823)
|-.|.|+.|.++.||...|.+|++|+.|+|..|.|..+ .-.+..|++|+.|.|..|.+....-..+-.|..++.+++..
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 99999999999999999878899999999999988766 45688899999999998887654333344456666666652
Q ss_pred -CCcc-cccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeeccc
Q 003399 624 -PCCC-TEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTV 701 (823)
Q Consensus 624 -~~~~-~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~ 701 (823)
.... -...+-+|+.|+.|+++++. ....-+.+....++|+.|+|+.| ++++|.-..+..++.|+.|.|+.|.
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~Na--I~rih~d~WsftqkL~~LdLs~N----~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNA--IQRIHIDSWSFTQKLKELDLSSN----RITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred chhhhhhcccccccchhhhhccchhh--hheeecchhhhcccceeEecccc----ccccCChhHHHHHHHhhhhcccccc
Confidence 2121 22237789999999999885 33333456667789999999876 6777766666778899999999998
Q ss_pred CCCCCcccccCCCCCCeEEeecCccCC--ccccccCCCCCcccEEeeecCCCCcceee-cccccccccEEEeecCCCCCC
Q 003399 702 LMDDPMPTLEKLPLLQVLKLKQNSYSG--RKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKK 778 (823)
Q Consensus 702 l~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~lp~L~~L~i~~C~~l~~ 778 (823)
+....-..+..+.+|+.|+|+.|.+.. +.-...+.++|+|+.|.|.++ .++.++. .+..++.|++|++.+++.-.-
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceee
Confidence 765555567789999999999887543 222344677999999999997 5888864 467899999999999985444
Q ss_pred CchhccCCCCCcEEEecC
Q 003399 779 MPEQLWCIKSLNKFDCWW 796 (823)
Q Consensus 779 lp~~l~~l~~L~~L~l~~ 796 (823)
=|..+..+ .|++|.+..
T Consensus 432 q~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cccccccc-hhhhhhhcc
Confidence 46677777 888886643
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=2.8e-20 Score=197.26 Aligned_cols=287 Identities=19% Similarity=0.181 Sum_probs=198.2
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCc--ccchhhhhcCCC
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLK--SLPSSLLSNLLN 568 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~--~lp~~i~~~L~~ 568 (823)
+.+++-|.+...... ..+.-++.+.+|..|.+++|++.++...+..|+.||.+.++.|+++ .+|+.| ..|..
T Consensus 31 Mt~~~WLkLnrt~L~-----~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di-F~l~d 104 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-----QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI-FRLKD 104 (1255)
T ss_pred hhheeEEEechhhhh-----hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh-ccccc
Confidence 666666666554442 2445667777777777777777777667777778888888777766 678887 78888
Q ss_pred ccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccC-CCcccccccCCCCccceEEeeccc
Q 003399 569 LYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALH-PCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 569 L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
|.+|||++|++.+.|..+..-+++-.|+|++|++....-+-+-+|..|-++++++ ....++..+..|.+|+.|.++++.
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 8888888888888888888888888888888877654333566677777777763 333444447777777777777763
Q ss_pred ccchhhHHHhhcCCCCCcEEEeecCC-----CCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEee
Q 003399 648 SYNQSLLSKSLCRLSCLESLKLANES-----KMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLK 722 (823)
Q Consensus 648 ~~~~~~l~~~l~~l~~L~~L~l~~~~-----~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 722 (823)
....-...+..+++|+.|.+++.. .+++| ..+.||..++++.|.+ ...|..+-++++|+.|+|+
T Consensus 185 --L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl--------d~l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 185 --LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL--------DDLHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred --hhHHHHhcCccchhhhhhhcccccchhhcCCCch--------hhhhhhhhccccccCC-CcchHHHhhhhhhheeccC
Confidence 111112233445556666665421 11122 3367888888888876 4566778888888888888
Q ss_pred cCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCC-CCCCchhccCCCCCcEEEecCC
Q 003399 723 QNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAY-LKKMPEQLWCIKSLNKFDCWWP 797 (823)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~-l~~lp~~l~~l~~L~~L~l~~c 797 (823)
+|.++. +....+...+|++|+++.+ .+..+|.....+|+|+.|.+.++.. ...+|++++.+.+|+.+...+.
T Consensus 254 ~N~ite--L~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 254 GNKITE--LNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred cCceee--eeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 887765 3444556778888888876 4777888888888888888877753 3578888888888877765553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=4.5e-20 Score=186.85 Aligned_cols=292 Identities=21% Similarity=0.177 Sum_probs=164.3
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
...++.+.+..+... -.++.++.+..|..|+..+|++.++|..++.+..|..|++.+++++++|+.. -+++.|+
T Consensus 113 ~~~l~~l~~s~n~~~-----el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~-i~m~~L~ 186 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-----ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENH-IAMKRLK 186 (565)
T ss_pred hhhhhhhhcccccee-----ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHH-HHHHHHH
Confidence 444555555444332 1234445556666666666666666666666666666666666666666665 4466666
Q ss_pred EEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-------------------------C
Q 003399 571 TLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-------------------------C 625 (823)
Q Consensus 571 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-------------------------~ 625 (823)
.||...|-+..+|+.++.|.+|..|++..|.+.. .|.++.+..|..|.++.+ .
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 6666666666666666666666666666665543 334444444444444421 1
Q ss_pred cccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC--------------------------------
Q 003399 626 CCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES-------------------------------- 673 (823)
Q Consensus 626 ~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-------------------------------- 673 (823)
...+..+.-+.+|.+|+++++ ....+|.+++++ +|+.|.+.+|+
T Consensus 265 ke~Pde~clLrsL~rLDlSNN---~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNN---DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred ccCchHHHHhhhhhhhcccCC---ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 222222344444444444444 344455555555 55555555532
Q ss_pred -------------CCC------CCcEEeeCCc------------CcccCccEeEeecccC--------------------
Q 003399 674 -------------KMP------RLSKIALAEY------------LFPHSLTHLSFSNTVL-------------------- 702 (823)
Q Consensus 674 -------------~~~------~L~~L~l~~~------------~~~~~L~~L~L~~~~l-------------------- 702 (823)
+++ +.+.|.+++- ..-.-...++++.|.+
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 000 0011111110 0000012222322221
Q ss_pred ---CCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcc-----------------------ee
Q 003399 703 ---MDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE-----------------------WT 756 (823)
Q Consensus 703 ---~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-----------------------~~ 756 (823)
.+.++..++.+++|..|+|++|-.. .+|...+++-.|+.|+++.+ .+.. ++
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccC
Confidence 1234445667777888888744333 35666667777777777765 2332 22
Q ss_pred e-cccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 757 M-GNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 757 ~-~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
. ..+.|.+|.+|++.++. +..+|..++++++|++|+++|.|
T Consensus 498 ~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 2 25689999999999886 78899999999999999999998
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=9.4e-18 Score=186.93 Aligned_cols=298 Identities=22% Similarity=0.225 Sum_probs=166.0
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
+-+|.+|.+.++.... .+.-+..+..|+.|+++.|-|.++|.+++++.+|+||+|.+|.+..+|.++ ..+.+|+
T Consensus 44 ~v~L~~l~lsnn~~~~-----fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~ 117 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISS-----FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQ 117 (1081)
T ss_pred eeeeEEeecccccccc-----CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhccc
Confidence 3447777777666532 223345566777777777777777777777777777777777777777777 7777777
Q ss_pred EEeCCCCcccccchhhcCCCCCceeeccC-----------------------------------------cccCCCCCCC
Q 003399 571 TLDMPFSYIDHTADEFWKMNKLRHLNFGS-----------------------------------------ITLPAHPGKY 609 (823)
Q Consensus 571 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~-----------------------------------------~~~~~~~~~~ 609 (823)
.||+++|.+...|.-+..+..+..+..++ |.+.......
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence 77777776655554433333222222222 2111000000
Q ss_pred cCC---------------------------------------Ccccceeecc-CCCcccccccCCCCccceEEeecccc-
Q 003399 610 CGS---------------------------------------LENLNFISAL-HPCCCTEDILGRLPNLRNLRIQGDLS- 648 (823)
Q Consensus 610 i~~---------------------------------------L~~L~~l~~~-~~~~~~~~~l~~l~~L~~L~i~~~~~- 648 (823)
+.+ -+.|++++++ .....+++.++.+.+|+.|.+..+.-
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH
Confidence 000 1122223332 11223445567777888887776530
Q ss_pred -------------------cchhhHHHhhcCCCCCcEEEeecCC---------------------CCCCCcEEeeCCcCc
Q 003399 649 -------------------YNQSLLSKSLCRLSCLESLKLANES---------------------KMPRLSKIALAEYLF 688 (823)
Q Consensus 649 -------------------~~~~~l~~~l~~l~~L~~L~l~~~~---------------------~~~~L~~L~l~~~~~ 688 (823)
...+.+|..+..++.|++|+|..|. ....+..+.-.+-..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 0123344445556777777777642 000111111111134
Q ss_pred ccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeec----------
Q 003399 689 PHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG---------- 758 (823)
Q Consensus 689 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~---------- 758 (823)
++.|+.|.+.+|.+++...+.+.++++|+.|+|++|.+.. ........++.|+.|.|+++ .++.+|..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHH
Confidence 5667778888888887778888888888888888765443 11223456777777777776 35555543
Q ss_pred ------------ccccccccEEEeecCCCCC--CCchhccCCCCCcEEEecCCC
Q 003399 759 ------------NAAMPKLECLIINPCAYLK--KMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 759 ------------~~~lp~L~~L~i~~C~~l~--~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+..+|.|+.++++.+ .|+ .+|..... ++|++|+++|.+
T Consensus 436 ~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 436 RAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCC-cccceeeccCCc
Confidence 345556666666533 333 22322221 667777777665
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=4.7e-18 Score=172.39 Aligned_cols=261 Identities=20% Similarity=0.211 Sum_probs=156.7
Q ss_pred CccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEE
Q 003399 493 QLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTL 572 (823)
Q Consensus 493 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L 572 (823)
.+..+.+..+... .....+.++..|.||+++++.+.++|.+|+.+..++.|+.+.+++.++|+.+ +.+.+|..|
T Consensus 46 ~l~~lils~N~l~-----~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-----VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKL 119 (565)
T ss_pred chhhhhhccCchh-----hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhh
Confidence 3445555555432 2345567777888888888888888888888888888888888888888887 788888888
Q ss_pred eCCCCcccccchhhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeeccCCCcccccccCCCCccceEEeecccccch
Q 003399 573 DMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQ 651 (823)
Q Consensus 573 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~ 651 (823)
+.+++.+.++|++|+.+..|..|+..+|++.. .| ++++ +.+|..|.+.++ ..
T Consensus 120 ~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~s--lp~~~~~----------------------~~~l~~l~~~~n---~l 172 (565)
T KOG0472|consen 120 DCSSNELKELPDSIGRLLDLEDLDATNNQISS--LPEDMVN----------------------LSKLSKLDLEGN---KL 172 (565)
T ss_pred hccccceeecCchHHHHhhhhhhhcccccccc--CchHHHH----------------------HHHHHHhhcccc---ch
Confidence 88888888888888888888888777776653 22 4444 444444444433 33
Q ss_pred hhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccc
Q 003399 652 SLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKL 731 (823)
Q Consensus 652 ~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 731 (823)
.++|...-.++.|++|+...| -|+.+ ....+.+.+|..|+|..|.+ ..+|.|+.+..|++|++..|.+.. +
T Consensus 173 ~~l~~~~i~m~~L~~ld~~~N----~L~tl-P~~lg~l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~--l 243 (565)
T KOG0472|consen 173 KALPENHIAMKRLKHLDCNSN----LLETL-PPELGGLESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEM--L 243 (565)
T ss_pred hhCCHHHHHHHHHHhcccchh----hhhcC-ChhhcchhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHh--h
Confidence 333333333445555544322 11111 11113344455555555554 223356666666666665444332 2
Q ss_pred ccc-CCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 732 TCG-SYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 732 ~~~-~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+.. ...+++|..|++.++ .+++.|.++.-+.+|+.|+++++. +.++|..++++ .|+.|.+.|.|
T Consensus 244 pae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 222 235666666666665 466666666666666677666654 56666666666 66666666666
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.8e-13 Score=158.12 Aligned_cols=233 Identities=20% Similarity=0.117 Sum_probs=143.0
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCc
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSI 600 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 600 (823)
+|+.|++.+|.++.+|.. +.+|++|++++|.++.+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcCC
Confidence 577777777777777652 45677777777777777642 34667777777777766652 245667777777
Q ss_pred ccCCCCCCCcCCCcccceeeccCC-CcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCc
Q 003399 601 TLPAHPGKYCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLS 679 (823)
Q Consensus 601 ~~~~~~~~~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~ 679 (823)
.+.. .|. .+.+|+.++++.+ ...++. -..+|+.|.+++| ....+|.. ..+|+.|++++| +|+
T Consensus 293 ~Lt~--LP~--~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls~N---~L~~LP~l---p~~Lq~LdLS~N----~Ls 355 (788)
T PRK15387 293 QLTS--LPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNN---QLTSLPTL---PSGLQELSVSDN----QLA 355 (788)
T ss_pred cccc--ccc--cccccceeECCCCccccCCC---CcccccccccccC---cccccccc---ccccceEecCCC----ccC
Confidence 6654 221 1234555555522 112222 1234566666665 22333321 136777777654 222
Q ss_pred EEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecc
Q 003399 680 KIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGN 759 (823)
Q Consensus 680 ~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 759 (823)
.+. ..+++|+.|++++|.+.. ++. + .++|+.|+|++|.+.. ++. .+++|+.|++++|. +..+|..
T Consensus 356 ~LP----~lp~~L~~L~Ls~N~L~~-LP~-l--~~~L~~LdLs~N~Lt~--LP~---l~s~L~~LdLS~N~-LssIP~l- 420 (788)
T PRK15387 356 SLP----TLPSELYKLWAYNNRLTS-LPA-L--PSGLKELIVSGNRLTS--LPV---LPSELKELMVSGNR-LTSLPML- 420 (788)
T ss_pred CCC----CCCcccceehhhcccccc-Ccc-c--ccccceEEecCCcccC--CCC---cccCCCEEEccCCc-CCCCCcc-
Confidence 221 124577778888877643 222 1 3578888888777664 332 24678888888874 6666642
Q ss_pred cccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 760 AAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 760 ~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+.+|+.|++++|. ++.+|..+.++++|+.|++++++
T Consensus 421 --~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 --PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 3577888888775 67788888888888888888876
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.1e-13 Score=161.21 Aligned_cols=223 Identities=19% Similarity=0.219 Sum_probs=124.3
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCc
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSI 600 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 600 (823)
.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+ . .+|+.|+|++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 34455555555444444332 24555555555555554433 1 244555555554444444332 24455555444
Q ss_pred ccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcE
Q 003399 601 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSK 680 (823)
Q Consensus 601 ~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 680 (823)
.+.. ++..+ .++|+.|++++| ....+|..+. ++|+.|++++| ++..
T Consensus 273 ~L~~-----------------------LP~~l--~~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~N----~Lt~ 318 (754)
T PRK15370 273 KISC-----------------------LPENL--PEELRYLSVYDN---SIRTLPAHLP--SGITHLNVQSN----SLTA 318 (754)
T ss_pred ccCc-----------------------ccccc--CCCCcEEECCCC---ccccCcccch--hhHHHHHhcCC----cccc
Confidence 4331 11112 136777777776 2333443322 35667777654 2332
Q ss_pred EeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeeccc
Q 003399 681 IALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNA 760 (823)
Q Consensus 681 L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 760 (823)
+.. ..+++|+.|++++|.++. .+..+ .++|+.|+|++|.+.. +|..+ .++|+.|+|++| .+..+|...
T Consensus 319 LP~---~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N-~Lt~LP~~l- 386 (754)
T PRK15370 319 LPE---TLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPETL--PPTITTLDVSRN-ALTNLPENL- 386 (754)
T ss_pred CCc---cccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChhh--cCCcCEEECCCC-cCCCCCHhH-
Confidence 211 124678888888887754 34333 3688888888887653 33322 468889999887 466666543
Q ss_pred ccccccEEEeecCCCCCCCchhc----cCCCCCcEEEecCCC
Q 003399 761 AMPKLECLIINPCAYLKKMPEQL----WCIKSLNKFDCWWPQ 798 (823)
Q Consensus 761 ~lp~L~~L~i~~C~~l~~lp~~l----~~l~~L~~L~l~~c~ 798 (823)
.++|+.|++++|. +..+|..+ ..++++..|++.+.|
T Consensus 387 -~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 -PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2478888888875 56666544 345778888888877
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=3.5e-13 Score=155.80 Aligned_cols=258 Identities=17% Similarity=0.076 Sum_probs=171.1
Q ss_pred EEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCc
Q 003399 477 AVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLK 556 (823)
Q Consensus 477 sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~ 556 (823)
.+..+.....+....++++.|.+..+.... ++ ..+++|++|+|++|.++.+|.. ..+|+.|++++|.+.
T Consensus 207 dLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~----LP----~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 207 NVGESGLTTLPDCLPAHITTLVIPDNNLTS----LP----ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred EcCCCCCCcCCcchhcCCCEEEccCCcCCC----CC----CCCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 333333333333345677888877765532 11 2357889999999988888753 357888999998888
Q ss_pred ccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCC-
Q 003399 557 SLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRL- 635 (823)
Q Consensus 557 ~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l- 635 (823)
.+|... .+|..|++++|+++.+|.. +++|+.|++++|.+.... ....+ |..+.+.++ .+.. +..+
T Consensus 276 ~Lp~lp----~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp-~lp~~---L~~L~Ls~N--~L~~-LP~lp 341 (788)
T PRK15387 276 HLPALP----SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLP-ALPSE---LCKLWAYNN--QLTS-LPTLP 341 (788)
T ss_pred hhhhch----hhcCEEECcCCcccccccc---ccccceeECCCCccccCC-CCccc---ccccccccC--cccc-ccccc
Confidence 887632 4677889999988888863 478899999988776521 12222 334444421 1112 2222
Q ss_pred CccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCC
Q 003399 636 PNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPL 715 (823)
Q Consensus 636 ~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~ 715 (823)
.+|+.|+++++ ....+|.. ..+|+.|+++.| .|..+. ..+++|+.|++++|.+.. .+.. .++
T Consensus 342 ~~Lq~LdLS~N---~Ls~LP~l---p~~L~~L~Ls~N----~L~~LP----~l~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 342 SGLQELSVSDN---QLASLPTL---PSELYKLWAYNN----RLTSLP----ALPSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cccceEecCCC---ccCCCCCC---Ccccceehhhcc----ccccCc----ccccccceEEecCCcccC-CCCc---ccC
Confidence 47999999987 34445432 246777877765 233221 124679999999998753 2222 368
Q ss_pred CCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhc
Q 003399 716 LQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQL 783 (823)
Q Consensus 716 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l 783 (823)
|+.|++++|.+.. +|. .+.+|+.|++++| .+..+|..++.+++|+.|++++|+.-...|..+
T Consensus 404 L~~LdLS~N~Lss--IP~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTS--LPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCC--CCc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9999999887764 343 2457899999987 478899888899999999999998655555444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=1.3e-14 Score=162.29 Aligned_cols=245 Identities=23% Similarity=0.253 Sum_probs=144.4
Q ss_pred CcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccC
Q 003399 520 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 599 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 599 (823)
.+|.+++++.+.+..+|+.++.+.+|..|+...|.+..+|..+ ...++|+.|++..|.++.+|+....++.|++|+|..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri-~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRI-SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHH-hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 5677777777777777777777777777777777777777777 777777777777777777777777777777777777
Q ss_pred cccCCCCCCCcCCC-cccceeeccCC-Cccccc-ccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCC
Q 003399 600 ITLPAHPGKYCGSL-ENLNFISALHP-CCCTED-ILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 676 (823)
Q Consensus 600 ~~~~~~~~~~i~~L-~~L~~l~~~~~-~~~~~~-~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 676 (823)
|.+.......+..+ ..|..+..... ....+. .=..+..|+.|++.++. -.+.....+.++++|+.|+|+.|
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~--Ltd~c~p~l~~~~hLKVLhLsyN---- 393 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH--LTDSCFPVLVNFKHLKVLHLSYN---- 393 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc--ccccchhhhccccceeeeeeccc----
Confidence 76654221111111 11222222100 000000 01123445556665553 33333445666777777777765
Q ss_pred CCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCccee
Q 003399 677 RLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT 756 (823)
Q Consensus 677 ~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~ 756 (823)
.|.++.-.....+..|+.|+|++|.+ ...+..+..++.|+.|...+|.+.. +| .+..++.|+.++++.+ ++..+.
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N-~L~~~~ 468 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCN-NLSEVT 468 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccc-hhhhhh
Confidence 23333322334456677777777776 3445666777777777776665543 44 4566777777777754 455443
Q ss_pred eccccc-ccccEEEeecCCCC
Q 003399 757 MGNAAM-PKLECLIINPCAYL 776 (823)
Q Consensus 757 ~~~~~l-p~L~~L~i~~C~~l 776 (823)
.....- |+|++|++++++.+
T Consensus 469 l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhCCCcccceeeccCCccc
Confidence 222222 67777777777654
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=1.5e-14 Score=130.42 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=126.1
Q ss_pred hcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCcee
Q 003399 516 YGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 595 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 595 (823)
+..+.++..|-|+++.++.+|..|..|.+|+.|++++|.|.++|.++ +.+++|+.|++.-+.+..+|.+++.++-|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 34667788899999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred eccCcccCCCCCC-CcCCCcccceeeccC-CCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecC
Q 003399 596 NFGSITLPAHPGK-YCGSLENLNFISALH-PCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANE 672 (823)
Q Consensus 596 ~l~~~~~~~~~~~-~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 672 (823)
|+.+|++.....| .+--+++|.-+.+++ ....++.-++++++|+.|.+..+ ..-.+|..++.+..|+.|.+.+|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcccc
Confidence 9999998887777 566677887777763 33344433788888888777766 56667777777777777777654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.4e-12 Score=151.91 Aligned_cols=244 Identities=17% Similarity=0.181 Sum_probs=137.4
Q ss_pred ceEEEEEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeecc
Q 003399 472 AKRLNAVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLN 551 (823)
Q Consensus 472 ~r~l~sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~ 551 (823)
...+ .+........+....++++.|.+.++.... ++...+ ++|+.|++++|.++.+|..+. .+|+.|+|+
T Consensus 180 ~~~L-~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts----LP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTEL-RLKILGLTTIPACIPEQITTLILDNNELKS----LPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEE-EeCCCCcCcCCcccccCCcEEEecCCCCCc----CChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 3445 555544444434346788888888876532 333332 579999999999998887664 479999999
Q ss_pred CCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-Cccccc
Q 003399 552 IPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCCTED 630 (823)
Q Consensus 552 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~~~~~ 630 (823)
+|.+..+|..+ . .+|++|++++|++..+|..+. ++|++|++++|.+.... ..+. .+|..+.+..+ ...++.
T Consensus 250 ~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP-~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRITELPERL-P--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP-AHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccCcCChhH-h--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCc-ccch--hhHHHHHhcCCccccCCc
Confidence 99999999877 3 579999999999988887664 58999999998776421 1221 23333333311 111111
Q ss_pred ccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccc
Q 003399 631 ILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTL 710 (823)
Q Consensus 631 ~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l 710 (823)
.-.++|+.|.+++| ....+|..+. ++|+.|++++| ++..+. + ..+++|+.|+|++|.+. ..++.+
T Consensus 322 --~l~~sL~~L~Ls~N---~Lt~LP~~l~--~sL~~L~Ls~N----~L~~LP--~-~lp~~L~~LdLs~N~Lt-~LP~~l 386 (754)
T PRK15370 322 --TLPPGLKTLEAGEN---ALTSLPASLP--PELQVLDVSKN----QITVLP--E-TLPPTITTLDVSRNALT-NLPENL 386 (754)
T ss_pred --cccccceeccccCC---ccccCChhhc--CcccEEECCCC----CCCcCC--h-hhcCCcCEEECCCCcCC-CCCHhH
Confidence 11245666666555 2223443332 45555555543 122111 0 11345666666666553 223322
Q ss_pred cCCCCCCeEEeecCccCCc--cccccCCCCCcccEEeeecCC
Q 003399 711 EKLPLLQVLKLKQNSYSGR--KLTCGSYGFPNLKVLHLKSML 750 (823)
Q Consensus 711 ~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~ 750 (823)
. ++|+.|++++|.+..- .++.....+|.+..|.+.+++
T Consensus 387 ~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 P--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred H--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2 2455555655554320 111122234555555555543
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=9.5e-13 Score=155.64 Aligned_cols=277 Identities=24% Similarity=0.210 Sum_probs=178.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCC--Ccccccc-ccCccccceeeccCC-CCcccchhhhhcC
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLV--LIQYPSG-IENLFLLRYLKLNIP-SLKSLPSSLLSNL 566 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~--l~~lp~~-i~~L~~Lr~L~L~~~-~i~~lp~~i~~~L 566 (823)
...+|...+..+....+ ..-..++.|+.|-+.++. +..++.. |..+++||+|||++| .+.+||.+| ++|
T Consensus 522 ~~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GEL 594 (889)
T ss_pred hhheeEEEEeccchhhc------cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhh
Confidence 56777777777665321 122345579999998886 5555544 677999999999977 588999999 999
Q ss_pred CCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcC-CCcccceeeccCC-----CcccccccCCCCccce
Q 003399 567 LNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCG-SLENLNFISALHP-----CCCTEDILGRLPNLRN 640 (823)
Q Consensus 567 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~-~L~~L~~l~~~~~-----~~~~~~~l~~l~~L~~ 640 (823)
-+|++|+++++.++.+|.++.+|.+|.+|++..+...... +++. .|++|+++.+..+ ...+.+ +.++.+|+.
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ 672 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLEN 672 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHh-hhcccchhh
Confidence 9999999999999999999999999999999877644433 4333 3777777776622 234455 677777777
Q ss_pred EEeecccccchhhHHHhhcCCCCCc----EEEeecC---------CCCCCCcEEeeCCcCc----------------ccC
Q 003399 641 LRIQGDLSYNQSLLSKSLCRLSCLE----SLKLANE---------SKMPRLSKIALAEYLF----------------PHS 691 (823)
Q Consensus 641 L~i~~~~~~~~~~l~~~l~~l~~L~----~L~l~~~---------~~~~~L~~L~l~~~~~----------------~~~ 691 (823)
|.+..... .+...+..+..|. .+.+.++ ....+++.|.+.+|.. +++
T Consensus 673 ls~~~~s~----~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 673 LSITISSV----LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred heeecchh----HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 77765431 1111122222222 1111110 0445666666666522 334
Q ss_pred ccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccc---------cCCCCCcccEE-eeecCCCCcceeecccc
Q 003399 692 LTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTC---------GSYGFPNLKVL-HLKSMLWLEEWTMGNAA 761 (823)
Q Consensus 692 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~---------~~~~~~~L~~L-~L~~~~~l~~~~~~~~~ 761 (823)
+..+.+.+|.. -..+.+..-.|+|+.|.+..|....+.++. ....|+++..+ .+.+.+.+..+-...-.
T Consensus 749 l~~~~~~~~~~-~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 749 LSKVSILNCHM-LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred HHHHHhhcccc-ccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 44444445542 222334445688888888877655433321 12345666666 46666666666555556
Q ss_pred cccccEEEeecCCCCCCCch
Q 003399 762 MPKLECLIINPCAYLKKMPE 781 (823)
Q Consensus 762 lp~L~~L~i~~C~~l~~lp~ 781 (823)
+++|+.+.+..||+++.+|.
T Consensus 828 ~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 828 FLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ccchhheehhcCcccccCcc
Confidence 77799999999998887774
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.31 E-value=3.7e-13 Score=145.20 Aligned_cols=240 Identities=20% Similarity=0.135 Sum_probs=129.6
Q ss_pred hHHHhcCCCcceEEEccCCCCc-----cccccccCccccceeeccCCCCcc-------cchhhhhcCCCccEEeCCCCcc
Q 003399 512 WEKIYGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKS-------LPSSLLSNLLNLYTLDMPFSYI 579 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~i~~-------lp~~i~~~L~~L~~L~L~~~~l 579 (823)
+...+..++.|++|+++++.+. .++..+...+.|++|+++++.+.. ++..+ .++.+|+.|++++|.+
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNAL 93 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCC
Confidence 4566777777888888888873 456666677778888888876653 23334 6778888888888866
Q ss_pred cc-cchhhcCCCC---CceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCC-CccceEEeeccccc--chh
Q 003399 580 DH-TADEFWKMNK---LRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRL-PNLRNLRIQGDLSY--NQS 652 (823)
Q Consensus 580 ~~-lp~~i~~L~~---L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l-~~L~~L~i~~~~~~--~~~ 652 (823)
.. .+..+..+.+ |++|++++|.+..... ..+...+..+ ++|+.|++++|.-. ...
T Consensus 94 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 94 GPDGCGVLESLLRSSSLQELKLNNNGLGDRGL------------------RLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred ChhHHHHHHHHhccCcccEEEeeCCccchHHH------------------HHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 53 3444555544 8888888776542110 0111124555 77788888777511 223
Q ss_pred hHHHhhcCCCCCcEEEeecCCCCCCCcEEee----CCcCcccCccEeEeecccCCCCC----cccccCCCCCCeEEeecC
Q 003399 653 LLSKSLCRLSCLESLKLANESKMPRLSKIAL----AEYLFPHSLTHLSFSNTVLMDDP----MPTLEKLPLLQVLKLKQN 724 (823)
Q Consensus 653 ~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l----~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~ 724 (823)
.++..+..+++|++|++++|. +..-.+ .....+++|+.|++++|.+.... ...+..+++|+.|++++|
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 156 ALAKALRANRDLKELNLANNG----IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCC----CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 445556666667777766531 111000 00112345666666666543221 123344556666666655
Q ss_pred ccCCccccccCC----CCCcccEEeeecCCCC----cceeecccccccccEEEeecCC
Q 003399 725 SYSGRKLTCGSY----GFPNLKVLHLKSMLWL----EEWTMGNAAMPKLECLIINPCA 774 (823)
Q Consensus 725 ~~~~~~~~~~~~----~~~~L~~L~L~~~~~l----~~~~~~~~~lp~L~~L~i~~C~ 774 (823)
.+.+..+..... ..+.|+.|++++|... ..+......+++|+.|++++|.
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 544311111011 2345666666555311 0111222334555556555554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=3.9e-14 Score=127.88 Aligned_cols=169 Identities=24% Similarity=0.306 Sum_probs=114.2
Q ss_pred cccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCC
Q 003399 534 QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSL 613 (823)
Q Consensus 534 ~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L 613 (823)
++|. +.++.+...|-||+|+++..|+.| ..|.+|++|++.+++++++|..|+.|++|++|+++-|.+.. .|
T Consensus 25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lp----- 95 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LP----- 95 (264)
T ss_pred hccc-ccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--Cc-----
Confidence 4443 557788899999999999999999 99999999999999999999999999999999887765432 11
Q ss_pred cccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCcc
Q 003399 614 ENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLT 693 (823)
Q Consensus 614 ~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~ 693 (823)
..+|.++.|+.|++.++. .+...+|..| -.+..|+
T Consensus 96 ----------------rgfgs~p~levldltynn-l~e~~lpgnf----------------------------f~m~tlr 130 (264)
T KOG0617|consen 96 ----------------RGFGSFPALEVLDLTYNN-LNENSLPGNF----------------------------FYMTTLR 130 (264)
T ss_pred ----------------cccCCCchhhhhhccccc-cccccCCcch----------------------------hHHHHHH
Confidence 225555555555555441 1111222222 2245566
Q ss_pred EeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeeccc
Q 003399 694 HLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNA 760 (823)
Q Consensus 694 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 760 (823)
-|.|++|.+ +-.++.++++.+|+.|.+..|.... +|..++.+.+|+.|.+.++ .+.-+|.+++
T Consensus 131 alyl~dndf-e~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn-rl~vlppel~ 193 (264)
T KOG0617|consen 131 ALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN-RLTVLPPELA 193 (264)
T ss_pred HHHhcCCCc-ccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc-eeeecChhhh
Confidence 666666665 4556677788888888887665543 4555556666666666665 3555554433
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=2.9e-12 Score=138.17 Aligned_cols=260 Identities=18% Similarity=0.079 Sum_probs=140.9
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcc-------ccccccCccccceeeccCCCCcc-cchhh
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQ-------YPSGIENLFLLRYLKLNIPSLKS-LPSSL 562 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~-------lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i 562 (823)
.++++.|.+.++.........+...+...+.|+.|+++++.+.. ++..+.++.+|++|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 45567777766654211112234456677778888887776542 33456667788888888877663 33333
Q ss_pred hhcCCC---ccEEeCCCCccc-----ccchhhcCC-CCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccC
Q 003399 563 LSNLLN---LYTLDMPFSYID-----HTADEFWKM-NKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILG 633 (823)
Q Consensus 563 ~~~L~~---L~~L~L~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~ 633 (823)
..+.+ |+.|++++|.+. .++..+..+ ++|+.|++++|.+..... ..+...+.
T Consensus 102 -~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------------------~~~~~~~~ 162 (319)
T cd00116 102 -ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------------------EALAKALR 162 (319)
T ss_pred -HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------------------HHHHHHHH
Confidence 55544 888888877665 223445566 778888888776653110 01111244
Q ss_pred CCCccceEEeecccc--cchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEee----CCcCcccCccEeEeecccCCCCCc
Q 003399 634 RLPNLRNLRIQGDLS--YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIAL----AEYLFPHSLTHLSFSNTVLMDDPM 707 (823)
Q Consensus 634 ~l~~L~~L~i~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l----~~~~~~~~L~~L~L~~~~l~~~~~ 707 (823)
.+++|+.|++.++.- .....++..+..+++|++|++++|. +..... .....+++|++|++++|.+.+..+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG----LTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc----cChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 555666666666531 1112344445555667777666541 111000 001335667777777776644222
Q ss_pred cccc-----CCCCCCeEEeecCccCCc---cccccCCCCCcccEEeeecCCCCcc-----eeeccccc-ccccEEEeecC
Q 003399 708 PTLE-----KLPLLQVLKLKQNSYSGR---KLTCGSYGFPNLKVLHLKSMLWLEE-----WTMGNAAM-PKLECLIINPC 773 (823)
Q Consensus 708 ~~l~-----~l~~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~l~~-----~~~~~~~l-p~L~~L~i~~C 773 (823)
..+. ..+.|+.|++.+|.+... .+......+++|+.|+++++. +.. +......+ +.|+.|+|.+.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 2222 236778888877766532 122334455778888887764 322 12222334 56777766654
Q ss_pred C
Q 003399 774 A 774 (823)
Q Consensus 774 ~ 774 (823)
+
T Consensus 318 ~ 318 (319)
T cd00116 318 S 318 (319)
T ss_pred C
Confidence 4
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=2.3e-12 Score=131.48 Aligned_cols=269 Identities=16% Similarity=0.076 Sum_probs=162.2
Q ss_pred cccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccC-CCCcccchhhhhc
Q 003399 488 DDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNI-PSLKSLPSSLLSN 565 (823)
Q Consensus 488 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~-~~i~~lp~~i~~~ 565 (823)
..+.+....+.+..+.. ..+++..|+.++.||.|||+.|.|+.+ |..|..|..|-.|-+-+ |+|..+|...|++
T Consensus 63 ~~LP~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred ccCCCcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 34466667777777766 457889999999999999999999855 88899999887776665 8899999999999
Q ss_pred CCCccEEeCCCCcccccc-hhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEee
Q 003399 566 LLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQ 644 (823)
Q Consensus 566 L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~ 644 (823)
|..|+.|.+.-|++.-++ ..+..|++|..|.+..|.+....-..+..+..++.+....+. ... ..+++.+..-.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np--~ic-dCnL~wla~~~-- 213 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP--FIC-DCNLPWLADDL-- 213 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc--ccc-ccccchhhhHH--
Confidence 999999999999888775 568999999999988876654222233444444444333110 000 11122111000
Q ss_pred cccccchhhHHHhhcCCCCCcEEEeecC---------------C--CCCCCcEEeeC-----CcCcccCccEeEeecccC
Q 003399 645 GDLSYNQSLLSKSLCRLSCLESLKLANE---------------S--KMPRLSKIALA-----EYLFPHSLTHLSFSNTVL 702 (823)
Q Consensus 645 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~---------------~--~~~~L~~L~l~-----~~~~~~~L~~L~L~~~~l 702 (823)
...+..++.........+... . .....+..... .+..+++|+.|+|++|.+
T Consensus 214 -------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 214 -------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred -------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 000000111100000000000 0 00000000000 014567777778887777
Q ss_pred CCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce-eecccccccccEEEeecCC
Q 003399 703 MDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-TMGNAAMPKLECLIINPCA 774 (823)
Q Consensus 703 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~lp~L~~L~i~~C~ 774 (823)
+..-..++..+..+++|.|..|.+.. .-...+.++..|+.|+|.++. ++.+ |..+..+.+|.+|.+-.+|
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccCc
Confidence 66666677777777777777665433 112234567777777777764 3333 4455566677777766554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=6.3e-12 Score=128.30 Aligned_cols=250 Identities=20% Similarity=0.192 Sum_probs=156.2
Q ss_pred ceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCC-Ccccccchh-hcCCCCCceeecc
Q 003399 522 LRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPF-SYIDHTADE-FWKMNKLRHLNFG 598 (823)
Q Consensus 522 LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~~-i~~L~~L~~L~l~ 598 (823)
-..++|..|.|+++|+ +|+.+++||.||||+|.|+.+.+.-|..|.+|-+|-+.+ |+|+.+|++ +..|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3557788888887764 577788888888888888877666667888887777766 588888865 7778888888766
Q ss_pred CcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHH-hhcCCCCCcEEEeecCC--CC
Q 003399 599 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSK-SLCRLSCLESLKLANES--KM 675 (823)
Q Consensus 599 ~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~--~~ 675 (823)
-|++.- ...+.+..+++|..|.+..+ ..+.++. .+..+..++.+.+..|. ..
T Consensus 149 an~i~C----------------------ir~~al~dL~~l~lLslyDn---~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 149 ANHINC----------------------IRQDALRDLPSLSLLSLYDN---KIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred hhhhcc----------------------hhHHHHHHhhhcchhcccch---hhhhhccccccchhccchHhhhcCccccc
Confidence 655432 11222444555555544443 2222222 33334444444443321 00
Q ss_pred CCCcEE---------eeCCc-------------------CcccCccEe---EeecccCCCC-CcccccCCCCCCeEEeec
Q 003399 676 PRLSKI---------ALAEY-------------------LFPHSLTHL---SFSNTVLMDD-PMPTLEKLPLLQVLKLKQ 723 (823)
Q Consensus 676 ~~L~~L---------~l~~~-------------------~~~~~L~~L---~L~~~~l~~~-~~~~l~~l~~L~~L~L~~ 723 (823)
.+|+.+ ..+|. .+.-+++.+ -.+.|..... +...+..||+|+.|+|++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 111111 01111 111122222 2233433222 223478999999999998
Q ss_pred CccCCccccccCCCCCcccEEeeecCCCCccee-ecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 724 NSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 724 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
|.++. .-...+.+...|+.|.|..+. ++.+. ..+..+..|+.|++.++....--|-.++.+.+|.+|.+...|
T Consensus 284 N~i~~-i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 284 NKITR-IEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred Cccch-hhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 88876 335567788999999999874 55553 235678899999999998655567788999999999987644
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.2e-10 Score=116.81 Aligned_cols=235 Identities=20% Similarity=0.141 Sum_probs=153.0
Q ss_pred ccCccccceeeccCCCCcccch--hhhhcCCCccEEeCCCCcc---cccchhhcCCCCCceeeccCcccCCCCCCCcCCC
Q 003399 539 IENLFLLRYLKLNIPSLKSLPS--SLLSNLLNLYTLDMPFSYI---DHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSL 613 (823)
Q Consensus 539 i~~L~~Lr~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~l---~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L 613 (823)
=.+++.||...|.++.+...+. .. ..|++++.|||+.|-+ ..+-.-+..|++|+.|+++.|.+....
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~------- 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI------- 188 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc-------
Confidence 3467788888888887776653 33 7788888888888833 333455677888888888887654311
Q ss_pred cccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCcc
Q 003399 614 ENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLT 693 (823)
Q Consensus 614 ~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~ 693 (823)
.... -..+++|+.|.++.|. .....+...+..+++|+.|.+..|. ..-..-.....+..|+
T Consensus 189 ------------~s~~--~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~----~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 189 ------------SSNT--TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANE----IILIKATSTKILQTLQ 249 (505)
T ss_pred ------------cccc--hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccc----ccceecchhhhhhHHh
Confidence 0000 2256788888998885 3356666667778888988888752 0000001113467899
Q ss_pred EeEeecccCCCC-CcccccCCCCCCeEEeecCccCCcccccc-----CCCCCcccEEeeecCCCCcceee--cccccccc
Q 003399 694 HLSFSNTVLMDD-PMPTLEKLPLLQVLKLKQNSYSGRKLTCG-----SYGFPNLKVLHLKSMLWLEEWTM--GNAAMPKL 765 (823)
Q Consensus 694 ~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l~~~~~--~~~~lp~L 765 (823)
.|+|++|.+... .....+.||.|..|+++.+.+..-..+.. ...||+|++|.+..++ +..|+. ....+++|
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENL 328 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchh
Confidence 999999876543 34668899999999999887765444433 4679999999999885 555543 34567888
Q ss_pred cEEEeecCCCCCC----CchhccCCCCCcEEEecCCCHHH
Q 003399 766 ECLIINPCAYLKK----MPEQLWCIKSLNKFDCWWPQPEL 801 (823)
Q Consensus 766 ~~L~i~~C~~l~~----lp~~l~~l~~L~~L~l~~c~~~~ 801 (823)
+.|.+...+.-+. --..+..+++|..|+=.+|.++-
T Consensus 329 k~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~e 368 (505)
T KOG3207|consen 329 KHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNE 368 (505)
T ss_pred hhhhcccccccccccceeEEeeeehhhhhhhcccccChHH
Confidence 8888765543221 01134556666666555555443
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.92 E-value=2.3e-08 Score=111.09 Aligned_cols=282 Identities=13% Similarity=0.085 Sum_probs=155.0
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
+.++||++++++|...+... +.....+.|+|.+|+||||+++.++++.......-..+++. +....+...++..|+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in--~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN--CQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE--CCcCCCHHHHHHHHH
Confidence 68999999999999998543 22345578999999999999999998422222123456666 666667888999999
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCChh------hHHHHHhcCCCCCCCcE--EEEeeCcch
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTIR------MWDVIREILPDNQNGSR--VLITLTDIE 304 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~~------~~~~l~~~~~~~~~gs~--IivTTR~~~ 304 (823)
.++..... + ....+.++....+.+.+. ++..+||||+++... .+..+...+... ++++ ||.++....
T Consensus 108 ~~l~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 108 RQLFGHPP-P-SSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLT 184 (394)
T ss_pred HHhcCCCC-C-CCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcc
Confidence 99976221 0 123345677777777775 456899999998642 344444333222 3444 566666544
Q ss_pred hhh-------c--------c------------------cccCCCCCCCChhhhHHhHHHHcCCcceeeeeeccc-c----
Q 003399 305 MVT-------S--------F------------------QLEDGENIRLDLVPTGGPLRATYKGWPFFILYHGSI-S---- 346 (823)
Q Consensus 305 v~~-------~--------~------------------~f~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~-~---- 346 (823)
+.. . + +|......+..++.+++......|..+.|+.+.... .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322 0 0 111100111111222232322345566666551110 0
Q ss_pred cccccCCcCCHHHHHH-------hcccCCCCCCchhHhhhhc-ccCC-CcccchhHHHH--HHHhcCCCCC-ChHHHHHH
Q 003399 347 LEENIGEAVEIPLVLR-------YFKYCSLPFCLKPCFLYLS-VFTA-HLEISTRQLYQ--LWIAEGFIPD-NSEATAES 414 (823)
Q Consensus 347 ~~~~~~~~~~i~~~l~-------~~sy~~L~~~~k~cfl~~s-~fp~-~~~i~~~~li~--~w~a~g~i~~-~~~~~~~~ 414 (823)
.....-..+.+..++. .-.+..||.+.|..+..++ .... ...+...++.. ..+++.+-.. .......+
T Consensus 265 ~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~ 344 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYE 344 (394)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 0000011122222220 3457788988766544443 2221 13455555553 2333322111 12234567
Q ss_pred HHHHHHhcCceeeeec--CCCCcEeeEEcCc
Q 003399 415 YLEQLIKEGFVEAKKR--KAGGTINTCSIPG 443 (823)
Q Consensus 415 ~~~~L~~~sll~~~~~--~~~g~~~~~~mHd 443 (823)
|+.+|.+.+++..... +..|+...++.+.
T Consensus 345 ~l~~L~~~glI~~~~~~~g~~g~~~~~~~~~ 375 (394)
T PRK00411 345 YINKLDMLGIINTRYSGKGGRGRTRLISLSY 375 (394)
T ss_pred HHHHHHhcCCeEEEEecCCCCCCeEEEEecC
Confidence 9999999999987543 3345556665543
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.91 E-value=1.6e-10 Score=119.20 Aligned_cols=291 Identities=18% Similarity=0.144 Sum_probs=169.3
Q ss_pred CccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCC-Cc--cccccccCccccceeeccCC-CCcccc-hhhhhcCC
Q 003399 493 QLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLV-LI--QYPSGIENLFLLRYLKLNIP-SLKSLP-SSLLSNLL 567 (823)
Q Consensus 493 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-l~--~lp~~i~~L~~Lr~L~L~~~-~i~~lp-~~i~~~L~ 567 (823)
.+|.|.+.++.... ..-+..+..+++++..|++.+|. ++ .+.+.-..+.+|++|+|..| .++... ..+...++
T Consensus 139 ~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 34555555554432 23355666778888888887776 33 22222234677788887774 344221 11225677
Q ss_pred CccEEeCCCC-cccc--cchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEee
Q 003399 568 NLYTLDMPFS-YIDH--TADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQ 644 (823)
Q Consensus 568 ~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~ 644 (823)
+|++|++++| .++. +-.-...+.+|+.+.+.+|.-.. ++.|. ..-..+..+-++++.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--------le~l~------------~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--------LEALL------------KAAAYCLEILKLNLQ 276 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--------HHHHH------------HHhccChHhhccchh
Confidence 7888888877 5543 22223334445555443332110 11111 101233334455544
Q ss_pred cccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCc-CcccCccEeEeeccc-CCCCCccccc-CCCCCCeEEe
Q 003399 645 GDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEY-LFPHSLTHLSFSNTV-LMDDPMPTLE-KLPLLQVLKL 721 (823)
Q Consensus 645 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~-~~~~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L 721 (823)
.|.....+.+...-..+..|+.|..+++ .++....+... ...++|+.|.++.|. ++......++ +++.|+.|.+
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~~---t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSSC---TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccCC---CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 5543333334334445667777777643 23333222222 345788888888885 4444455555 6889999999
Q ss_pred ecCccCCcc-ccccCCCCCcccEEeeecCCCCcce-----eecccccccccEEEeecCCCCC-CCchhccCCCCCcEEEe
Q 003399 722 KQNSYSGRK-LTCGSYGFPNLKVLHLKSMLWLEEW-----TMGNAAMPKLECLIINPCAYLK-KMPEQLWCIKSLNKFDC 794 (823)
Q Consensus 722 ~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~~-----~~~~~~lp~L~~L~i~~C~~l~-~lp~~l~~l~~L~~L~l 794 (823)
.++....+. +.....++|.|+.|.++.|..+..- ...-.++..|+.|.+.+||.+. ..-..+..+++|+.+++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 877544322 4444567999999999988655432 3334567889999999999875 23345678899999999
Q ss_pred cCCCHHHHHHhccc
Q 003399 795 WWPQPELRQKLREF 808 (823)
Q Consensus 795 ~~c~~~~~~~~~~~ 808 (823)
.+|..-..+.+...
T Consensus 434 ~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 434 IDCQDVTKEAISRF 447 (483)
T ss_pred echhhhhhhhhHHH
Confidence 99997777777663
No 29
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=4.1e-08 Score=121.65 Aligned_cols=269 Identities=14% Similarity=0.156 Sum_probs=159.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-CCHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-YDADQIVDIIIK 235 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~ 235 (823)
..+|-|+ .+.+.|... ...+++.|.|++|.||||++...... ++.++|++ +... -+...+...++.
T Consensus 14 ~~~~~R~----rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~--l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 14 HNTVVRE----RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYS--LDESDNQPERFASYLIA 80 (903)
T ss_pred cccCcch----HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEe--cCcccCCHHHHHHHHHH
Confidence 4556555 455555432 35789999999999999999998852 23689999 8644 455667777777
Q ss_pred HhCCCCCC--cc-------cccCCHHHHHHHHHHHhc--CCcEEEEEecCCChh---hHHHHHhcCCCCCCCcEEEEeeC
Q 003399 236 FLMPSSRL--SE-------IEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTIR---MWDVIREILPDNQNGSRVLITLT 301 (823)
Q Consensus 236 ~l~~~~~~--~~-------~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~~---~~~~l~~~~~~~~~gs~IivTTR 301 (823)
.+...... +. ....+.......+...+. +.+++||+||+...+ ..+.+...+.....+-++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 77431110 00 011223333444444443 589999999996542 22233333334445678989999
Q ss_pred cchhh---h------cc-------cccCCC-------C-CCCChhhhHHhHHHHcCCcceeeee----eccccccc----
Q 003399 302 DIEMV---T------SF-------QLEDGE-------N-IRLDLVPTGGPLRATYKGWPFFILY----HGSISLEE---- 349 (823)
Q Consensus 302 ~~~v~---~------~~-------~f~~~~-------~-~~~~~~~~~~~i~~~c~GlPLai~~----~~~~~~~~---- 349 (823)
...-. . .. .|...+ . ..+--.+...+|.+.|+|.|+++.. ...-.+..
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~ 240 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSA 240 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhh
Confidence 84211 1 00 232210 0 1112245568899999999999876 11111100
Q ss_pred cc--C-CcCCHHHHHHhcccCCCCCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCcee
Q 003399 350 NI--G-EAVEIPLVLRYFKYCSLPFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVE 426 (823)
Q Consensus 350 ~~--~-~~~~i~~~l~~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~ 426 (823)
.. . ....+...+..--++.||++.+..++..|+++ .++.+-+-... | .+.+...+++|.+.+++.
T Consensus 241 ~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~---~------~~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 241 RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT---G------EENGQMRLEELERQGLFI 308 (903)
T ss_pred HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc---C------CCcHHHHHHHHHHCCCee
Confidence 10 1 12346666513348899999999999999987 33433222111 1 122578899999999975
Q ss_pred eeecCCCCcEeeEEcCcchHHHHHhcC
Q 003399 427 AKKRKAGGTINTCSIPGCWRPVLLLVP 453 (823)
Q Consensus 427 ~~~~~~~g~~~~~~mHdlv~d~a~~~~ 453 (823)
..... ....|+.|++++++.+...
T Consensus 309 ~~~~~---~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 309 QRMDD---SGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred EeecC---CCCEEehhHHHHHHHHHHH
Confidence 43211 1146888999999988754
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.6e-09 Score=101.75 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=46.5
Q ss_pred cCCCcceEEEccCCCCcccccccc-CccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhc-CCCCCce
Q 003399 517 GMFKLLRVLDLGSLVLIQYPSGIE-NLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFW-KMNKLRH 594 (823)
Q Consensus 517 ~~~~~LrvL~L~~~~l~~lp~~i~-~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~ 594 (823)
-+...+|.|+|.++.|+.+. .++ .+.+|+.|+|++|.|+.++. + ..+++|++|++++|.|+.++..+. .+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-L-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-c-cChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34456788999998888764 355 57888999999998888864 4 788899999999998888876553 6889999
Q ss_pred eeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccccc-chhhHHHhhcCCCCCcEEEee
Q 003399 595 LNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSY-NQSLLSKSLCRLSCLESLKLA 670 (823)
Q Consensus 595 L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~-~~~~l~~~l~~l~~L~~L~l~ 670 (823)
|++++|.+.. ...+.. +..+++|+.|++.++.-. ....-...+..+++|+.|+-.
T Consensus 93 L~L~~N~I~~--------------------l~~l~~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISD--------------------LNELEP-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---S--------------------CCCCGG-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCC--------------------hHHhHH-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9888887654 112223 667788888888776421 111122345566666666543
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2e-10 Score=113.18 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=31.3
Q ss_pred CCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCc-ceeecccccccccEEEeecCC
Q 003399 712 KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLE-EWTMGNAAMPKLECLIINPCA 774 (823)
Q Consensus 712 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~~~~~~~~lp~L~~L~i~~C~ 774 (823)
.+|+|..|+|++|..........+..|+.|++|.++.|-.+. +--..+..+|+|.+|++.+|-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 455566666655433222223334456666666666554332 111234556666666666654
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=3.2e-09 Score=107.55 Aligned_cols=253 Identities=18% Similarity=0.147 Sum_probs=170.9
Q ss_pred hHHHhcCCCcceEEEccCCCCc-----cccccccCccccceeeccCCC----Ccccchhh------hhcCCCccEEeCCC
Q 003399 512 WEKIYGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPS----LKSLPSSL------LSNLLNLYTLDMPF 576 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~----i~~lp~~i------~~~L~~L~~L~L~~ 576 (823)
.......+..+..|+|++|.+. .+-+.+.+.++||.-+++.-. ..++|+.+ +-.+++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4456778888999999999876 345566677789998888632 22555443 24567999999999
Q ss_pred Ccc--cccc---hhhcCCCCCceeeccCcccCCCCCCCcCC-CcccceeeccCCCcccccccCCCCccceEEeeccc--c
Q 003399 577 SYI--DHTA---DEFWKMNKLRHLNFGSITLPAHPGKYCGS-LENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL--S 648 (823)
Q Consensus 577 ~~l--~~lp---~~i~~L~~L~~L~l~~~~~~~~~~~~i~~-L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~--~ 648 (823)
|-+ ..++ .-|.++..|+||.|.+|.+.......++. |..|.. . .-.++-++|+.+....++ +
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~---~-------kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAV---N-------KKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHH---H-------hccCCCcceEEEEeecccccc
Confidence 943 3332 34778999999999998765322222333 444331 1 115667789988888776 3
Q ss_pred cchhhHHHhhcCCCCCcEEEeecCC-CCCCCcEEeeCCcCcccCccEeEeecccCCCCC----cccccCCCCCCeEEeec
Q 003399 649 YNQSLLSKSLCRLSCLESLKLANES-KMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDP----MPTLEKLPLLQVLKLKQ 723 (823)
Q Consensus 649 ~~~~~l~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~ 723 (823)
.....+...+...+.|+.+.++.|. .++.. .+-..+...+++|+.|+|..|.++... ...+..+|+|+.|++.+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 3445666778888899999998764 22222 222233356889999999999886543 33466789999999998
Q ss_pred CccCCcccc----ccCCCCCcccEEeeecCCCCc----ceeecccccccccEEEeecCCC
Q 003399 724 NSYSGRKLT----CGSYGFPNLKVLHLKSMLWLE----EWTMGNAAMPKLECLIINPCAY 775 (823)
Q Consensus 724 ~~~~~~~~~----~~~~~~~~L~~L~L~~~~~l~----~~~~~~~~lp~L~~L~i~~C~~ 775 (823)
|........ ....++|+|+.|.+.+|..-. .+.......|.|+.|++++|..
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 876653211 112459999999999985322 1223345689999999999984
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.5e-09 Score=112.77 Aligned_cols=214 Identities=20% Similarity=0.157 Sum_probs=130.7
Q ss_pred CcccchhhhhcCCCccEEeCCCCcccccch--hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCccccccc
Q 003399 555 LKSLPSSLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDIL 632 (823)
Q Consensus 555 i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l 632 (823)
+.++-..- +++.+|+...|++|.+...+. ....|++++.|||+.|-+.. ...+.++.
T Consensus 110 fDki~akQ-sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--------------------w~~v~~i~ 168 (505)
T KOG3207|consen 110 FDKIAAKQ-SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--------------------WFPVLKIA 168 (505)
T ss_pred HHHHHHHh-hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--------------------HHHHHHHH
Confidence 34454444 688999999999998887763 67789999999999986653 33444557
Q ss_pred CCCCccceEEeeccccc--chhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCc-CcccCccEeEeecccCCCCCccc
Q 003399 633 GRLPNLRNLRIQGDLSY--NQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEY-LFPHSLTHLSFSNTVLMDDPMPT 709 (823)
Q Consensus 633 ~~l~~L~~L~i~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~-~~~~~L~~L~L~~~~l~~~~~~~ 709 (823)
..|++|+.|+++.+.-. ...... ..+++|+.|.|+.|. |..=.+..+ ..+|+|+.|.|..|.........
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CG----ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~ 241 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCG----LSWKDVQWILLTFPSLEVLYLEANEIILIKATS 241 (505)
T ss_pred HhcccchhcccccccccCCccccch---hhhhhhheEEeccCC----CCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence 78899999988876410 000000 023445555554431 111000000 35777888888777411111222
Q ss_pred ccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCccee--ec-----ccccccccEEEeecCCCCCCCch-
Q 003399 710 LEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT--MG-----NAAMPKLECLIINPCAYLKKMPE- 781 (823)
Q Consensus 710 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~-----~~~lp~L~~L~i~~C~~l~~lp~- 781 (823)
..-+..|+.|+|++|.+.........+.||.|+.|+++.+ .+.++. .. ...||+|+.|.+..++. ...++
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl 319 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSL 319 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc-cccccc
Confidence 3345678888888877665444455677888888888876 344442 21 34688888888888763 32332
Q ss_pred -hccCCCCCcEEEecCCC
Q 003399 782 -QLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 782 -~l~~l~~L~~L~l~~c~ 798 (823)
.+..+++|+.|.+...+
T Consensus 320 ~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNY 337 (505)
T ss_pred chhhccchhhhhhccccc
Confidence 35566777777655443
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=9.2e-10 Score=117.71 Aligned_cols=154 Identities=23% Similarity=0.241 Sum_probs=123.9
Q ss_pred hHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCC
Q 003399 512 WEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNK 591 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~ 591 (823)
.+.-+..|-.|..|.|+.|.+..+|..+++|..|.||+|+.|.+..+|..+ +.|+ |+.|.+++|+++.+|..|+.+..
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchh
Confidence 345566777888899999999999999999999999999999999999998 7774 99999999999999999999999
Q ss_pred CceeeccCcccCCCCCC-CcCCCcccceeecc-CCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEe
Q 003399 592 LRHLNFGSITLPAHPGK-YCGSLENLNFISAL-HPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKL 669 (823)
Q Consensus 592 L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~-~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l 669 (823)
|.+||.++|.+.. .| .++.|..|..+.+. +....+++.+..|+ |.+|+++++ +...+|..|.+|++|++|-|
T Consensus 168 l~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 168 LAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred HHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC---ceeecchhhhhhhhheeeee
Confidence 9999999987754 34 67777777776665 22223333366454 778888887 77788888999999999999
Q ss_pred ecCC
Q 003399 670 ANES 673 (823)
Q Consensus 670 ~~~~ 673 (823)
.+|.
T Consensus 242 enNP 245 (722)
T KOG0532|consen 242 ENNP 245 (722)
T ss_pred ccCC
Confidence 8874
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=7.9e-09 Score=102.04 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=44.4
Q ss_pred cCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEee
Q 003399 565 NLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQ 644 (823)
Q Consensus 565 ~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~ 644 (823)
..+.|.+|||++|.|+.+-+++.-++++|.|++++|.+.. +.. +..+++|+.|+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-----------------------v~n-La~L~~L~~LDLS 337 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-----------------------VQN-LAELPQLQLLDLS 337 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-----------------------ehh-hhhcccceEeecc
Confidence 3567888899999888888888888899999888887653 112 5667778888887
Q ss_pred cc
Q 003399 645 GD 646 (823)
Q Consensus 645 ~~ 646 (823)
++
T Consensus 338 ~N 339 (490)
T KOG1259|consen 338 GN 339 (490)
T ss_pred cc
Confidence 76
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=4.5e-08 Score=108.81 Aligned_cols=180 Identities=27% Similarity=0.308 Sum_probs=120.5
Q ss_pred HhcCCCcceEEEccCCCCccccccccCcc-ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCc
Q 003399 515 IYGMFKLLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLR 593 (823)
Q Consensus 515 ~~~~~~~LrvL~L~~~~l~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 593 (823)
....++.+..|++.++.+.++|..++.+. +|++|+++++.+..+|..+ +.+++|+.|++++|.+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhh
Confidence 34555889999999999999999888885 9999999999999998777 999999999999999999998888999999
Q ss_pred eeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC
Q 003399 594 HLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES 673 (823)
Q Consensus 594 ~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 673 (823)
.|++++|.+..... . +..+.+|+.|.+.++. ....+..+.++.++..|.+..+
T Consensus 190 ~L~ls~N~i~~l~~-~----------------------~~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~n- 242 (394)
T COG4886 190 NLDLSGNKISDLPP-E----------------------IELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELSNN- 242 (394)
T ss_pred heeccCCccccCch-h----------------------hhhhhhhhhhhhcCCc---ceecchhhhhcccccccccCCc-
Confidence 99999988765211 1 1223334455444431 2223334444444444443321
Q ss_pred CCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCC
Q 003399 674 KMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSG 728 (823)
Q Consensus 674 ~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 728 (823)
.+..+ +.....+++++.|++++|.+.... .++.+.+|+.|+++++.+..
T Consensus 243 ---~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~--~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 243 ---KLEDL-PESIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ---eeeec-cchhccccccceeccccccccccc--cccccCccCEEeccCccccc
Confidence 11110 112234556677777777653322 26677777777777665543
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=2.1e-08 Score=99.05 Aligned_cols=135 Identities=22% Similarity=0.205 Sum_probs=96.0
Q ss_pred cCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCccccc
Q 003399 632 LGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLE 711 (823)
Q Consensus 632 l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 711 (823)
+.....|+.|+++++ ....+..+..-.+.++.|+++.|. +. .+.+...+++|+.|+|++|.+. ..-.+-.
T Consensus 280 ~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~----i~--~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNR----IR--TVQNLAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred cchHhhhhhcccccc---chhhhhhhhhhccceeEEeccccc----ee--eehhhhhcccceEeecccchhH-hhhhhHh
Confidence 555667888888887 555666677777888888888652 22 2233466789999999999863 3334445
Q ss_pred CCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce--eecccccccccEEEeecCCCCCCCch
Q 003399 712 KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW--TMGNAAMPKLECLIINPCAYLKKMPE 781 (823)
Q Consensus 712 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~lp~L~~L~i~~C~~l~~lp~ 781 (823)
++-+.+.|.|++|.+.. ..++..+-+|..|++.++ +++.+ -..+|++|+|++|.+.++| +..+|+
T Consensus 350 KLGNIKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET---LSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred hhcCEeeeehhhhhHhh---hhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 78889999999876543 234556778899999987 35544 2468999999999999998 444553
No 38
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.58 E-value=4.9e-07 Score=99.33 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=82.4
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc------ceeEEEeCCCCCCCCHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF------DCHAWISEPYSNEYDADQ 228 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~vs~~~~~~~ 228 (823)
+.++||++++++|..+|... +.....+.|+|++|+|||++++.+++. ..... -..+|+. .....+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in--~~~~~~~~~ 90 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVN--CQILDTLYQ 90 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEE--CCCCCCHHH
Confidence 58999999999999998752 223457899999999999999999983 22211 1356777 777667788
Q ss_pred HHHHHHHHhCC-CCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCCh
Q 003399 229 IVDIIIKFLMP-SSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTI 277 (823)
Q Consensus 229 ~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~ 277 (823)
++..|+.++.. ....+ ....+..+....+.+.+. +++++||||+++..
T Consensus 91 ~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 91 VLVELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 99999999952 11100 122344555666666664 56889999999876
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.57 E-value=4.7e-08 Score=93.21 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=45.0
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
+.++|.|.+.++.... ....-..+..|++|+|++|.+..++ .+..+.+|+.|++++|.|+.+++.+...+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~-----Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-----ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 5567888888777632 2222236789999999999999886 488899999999999999999876534799999
Q ss_pred EEeCCCCcccccc--hhhcCCCCCceeeccCcccCC
Q 003399 571 TLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLPA 604 (823)
Q Consensus 571 ~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 604 (823)
+|++++|+|..+- ..+..+++|++|++.+|.+..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999887663 457889999999999987653
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=1.1e-08 Score=109.61 Aligned_cols=190 Identities=21% Similarity=0.270 Sum_probs=150.5
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCc
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSI 600 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 600 (823)
.-...||+.|.+.++|..++.+..|..|.|..|.+..+|..+ ++|..|.+|||+.|.+..+|..+..|+ |+.|-+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 345679999999999999999999999999999999999999 999999999999999999999999887 899989998
Q ss_pred ccCCCCCC-CcCCCcccceeecc-CCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCC
Q 003399 601 TLPAHPGK-YCGSLENLNFISAL-HPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 678 (823)
Q Consensus 601 ~~~~~~~~-~i~~L~~L~~l~~~-~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 678 (823)
++.. .| .++-+++|..+++. +....++..++++.+|+.|.+..+ ....+|..+..+ .|..|++++| ++
T Consensus 154 kl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfScN----ki 223 (722)
T KOG0532|consen 154 KLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSCN----KI 223 (722)
T ss_pred cccc--CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecccC----ce
Confidence 8765 44 77888888888887 444555555899999999988877 677788888844 5778888754 56
Q ss_pred cEEeeCCcCcccCccEeEeecccCCCCCccccc---CCCCCCeEEeecC
Q 003399 679 SKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLE---KLPLLQVLKLKQN 724 (823)
Q Consensus 679 ~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~---~l~~L~~L~L~~~ 724 (823)
..+.+.. ..|..|+.|.|.+|.+. .++..++ ...=.++|+..-|
T Consensus 224 s~iPv~f-r~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SYLPVDF-RKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecchhh-hhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 6665543 56888999999999873 3333332 3333456666544
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.1e-09 Score=102.47 Aligned_cols=182 Identities=21% Similarity=0.223 Sum_probs=93.0
Q ss_pred CCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEe
Q 003399 590 NKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKL 669 (823)
Q Consensus 590 ~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l 669 (823)
+.|+||||+...++...+ ..++..|.+|+.|.+.+.+ -.+.+...+.+-.+|+.|+|
T Consensus 185 sRlq~lDLS~s~it~stl---------------------~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnl 241 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTL---------------------HGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNL 241 (419)
T ss_pred hhhHHhhcchhheeHHHH---------------------HHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeecc
Confidence 357888887766653221 1224555555555555554 33444445555555555555
Q ss_pred ecCCCCCCCcEEeeCCc-CcccCccEeEeecccCCCCCccccc-C-CCCCCeEEeecCc--cCCccccccCCCCCcccEE
Q 003399 670 ANESKMPRLSKIALAEY-LFPHSLTHLSFSNTVLMDDPMPTLE-K-LPLLQVLKLKQNS--YSGRKLTCGSYGFPNLKVL 744 (823)
Q Consensus 670 ~~~~~~~~L~~L~l~~~-~~~~~L~~L~L~~~~l~~~~~~~l~-~-l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L 744 (823)
+.+. .+.+..+.-. .+++.|..|+|+.|.+..+....+- + -++|..|+|+|+. +....+..-...+|+|..|
T Consensus 242 sm~s---G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 242 SMCS---GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred cccc---ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 5321 1111111000 3345566666666654333222211 1 2456666666542 1111222333457777777
Q ss_pred eeecCCCCcc-eeecccccccccEEEeecCCCCCCCch---hccCCCCCcEEEecCCCH
Q 003399 745 HLKSMLWLEE-WTMGNAAMPKLECLIINPCAYLKKMPE---QLWCIKSLNKFDCWWPQP 799 (823)
Q Consensus 745 ~L~~~~~l~~-~~~~~~~lp~L~~L~i~~C~~l~~lp~---~l~~l~~L~~L~l~~c~~ 799 (823)
+|++|..++. ....+..|+.|++|.++.|-.+- |. .+...|+|.+|++.+|-+
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccccC
Confidence 7777665542 22344567777777777775442 32 345567777777777653
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.47 E-value=1.4e-08 Score=105.17 Aligned_cols=279 Identities=15% Similarity=0.075 Sum_probs=177.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCC-Cc-cccc-cccCccccceeeccCCC-Ccc--cchhhhh
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLV-LI-QYPS-GIENLFLLRYLKLNIPS-LKS--LPSSLLS 564 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-l~-~lp~-~i~~L~~Lr~L~L~~~~-i~~--lp~~i~~ 564 (823)
+|++..|.+.++... +......+-..|+.|+.|+|..|. ++ ...+ -...+.+|.||++++|. |.. +-.-. .
T Consensus 163 CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~-r 239 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ-R 239 (483)
T ss_pred CCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh-c
Confidence 888888877777643 244556777899999999999976 65 2233 34468899999999985 442 32233 6
Q ss_pred cCCCccEEeCCCC-ccc--ccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceE
Q 003399 565 NLLNLYTLDMPFS-YID--HTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNL 641 (823)
Q Consensus 565 ~L~~L~~L~L~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L 641 (823)
++.+|+.+.+++| .+. .+-..-..+..+..+++..|..-. ...+-.+-..+..|+.|
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT--------------------D~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT--------------------DEDLWLIACGCHALQVL 299 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc--------------------chHHHHHhhhhhHhhhh
Confidence 7788899988888 322 222222334455556555553211 11111213456677778
Q ss_pred EeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCc-CcccCccEeEeecccCCCCC-c-ccccCCCCCCe
Q 003399 642 RIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEY-LFPHSLTHLSFSNTVLMDDP-M-PTLEKLPLLQV 718 (823)
Q Consensus 642 ~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~-~~~~~L~~L~L~~~~l~~~~-~-~~l~~l~~L~~ 718 (823)
..+++.......+.+-..+..+|+.|.+..+ .++....+..+ ...+.|+.+++..|....+. + ..-.++|.|+.
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c---~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGC---QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEecccc---chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 7777765444445555556678888888743 33333222222 45678999999888653322 2 23347899999
Q ss_pred EEeecCccCCcc----ccccCCCCCcccEEeeecCCCCccee-ecccccccccEEEeecCCCCCCCch--hccCCCCCcE
Q 003399 719 LKLKQNSYSGRK----LTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPE--QLWCIKSLNK 791 (823)
Q Consensus 719 L~L~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~lp~L~~L~i~~C~~l~~lp~--~l~~l~~L~~ 791 (823)
|.|+.|....+. +.....+...|+.|.|++|+.+.+-. .....+++|+.+++.+|.....-|. ...++|+++.
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 999977543322 22334567889999999998765332 2345789999999999988764332 4567888877
Q ss_pred EEec
Q 003399 792 FDCW 795 (823)
Q Consensus 792 L~l~ 795 (823)
..+.
T Consensus 457 ~a~~ 460 (483)
T KOG4341|consen 457 HAYF 460 (483)
T ss_pred hhhc
Confidence 6554
No 43
>PF05729 NACHT: NACHT domain
Probab=98.46 E-value=3.1e-07 Score=88.40 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=67.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccC----cceeEEEeCCCCCCCCHH---HHHHHHHHHhCCCCCCcccccCCHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHY----FDCHAWISEPYSNEYDAD---QIVDIIIKFLMPSSRLSEIEDKNYEM 253 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~ 253 (823)
+++.|.|.+|+||||+++.++..-..... +...+|+. .+...+.. .+...|..+...... ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~ 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS--LRDISDSNNSRSLADLLFDQLPESIA-------PIEE 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe--ehhhhhccccchHHHHHHHhhccchh-------hhHH
Confidence 57899999999999999999874222221 45666776 54433322 344444444432211 1111
Q ss_pred HHHHHHHHh-cCCcEEEEEecCCChhh---------HHHHH-hcCCC-CCCCcEEEEeeCcchh
Q 003399 254 KKIILHEYI-MTKRYLIVIDDVWTIRM---------WDVIR-EILPD-NQNGSRVLITLTDIEM 305 (823)
Q Consensus 254 ~~~~l~~~L-~~kr~LlVlDdvw~~~~---------~~~l~-~~~~~-~~~gs~IivTTR~~~v 305 (823)
.+...+ +.++++||+|+++.... +..+. ..++. ..++.+|+||||....
T Consensus 72 ---~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 72 ---LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred ---HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 222222 56899999999976521 22222 22332 3568999999998766
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=1.6e-07 Score=73.30 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=39.0
Q ss_pred ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCcc
Q 003399 544 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSIT 601 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 601 (823)
+|++|++++|.+..+|+..|.++++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56667777777777766555667777777777777766643 46677777777776664
No 45
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=3.5e-07 Score=92.96 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=63.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC--CCHHHHHHHHHHHhCCCC-CCcccc-cCCHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE--YDADQIVDIIIKFLMPSS-RLSEIE-DKNYEMKK 255 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~--~~~~~~~~~i~~~l~~~~-~~~~~~-~~~~~~~~ 255 (823)
-..++|+|.+|+|||||++++|++.... +|+.++|+. ++++ +++.++++.+...+-... +.+... ..-.....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~--vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVL--LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEE--EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999964444 899999999 8887 799999999933222211 100001 11112222
Q ss_pred HHHHHH-hcCCcEEEEEecCCCh
Q 003399 256 IILHEY-IMTKRYLIVIDDVWTI 277 (823)
Q Consensus 256 ~~l~~~-L~~kr~LlVlDdvw~~ 277 (823)
.....+ -.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 333322 2479999999999654
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=9.5e-07 Score=81.33 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=80.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccC-----cceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHY-----FDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMK 254 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 254 (823)
-+++.|+|.+|+|||++++.+.++ .... -..++|+. +....+...+...|+..++.... ...+..++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~l 75 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVN--CPSSRTPRDFAQEILEALGLPLK----SRQTSDEL 75 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEE--HHHHSSHHHHHHHHHHHHT-SSS----STS-HHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEE--eCCCCCHHHHHHHHHHHhCcccc----ccCCHHHH
Confidence 568999999999999999999983 3221 34567998 87777999999999999998654 23567777
Q ss_pred HHHHHHHhcCCc-EEEEEecCCCh---hhHHHHHhcCCCCCCCcEEEEeeCc
Q 003399 255 KIILHEYIMTKR-YLIVIDDVWTI---RMWDVIREILPDNQNGSRVLITLTD 302 (823)
Q Consensus 255 ~~~l~~~L~~kr-~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~IivTTR~ 302 (823)
...+.+.+...+ .+||+|++... +.++.+..... ..+.+||++-+.
T Consensus 76 ~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 788888887654 59999999654 34555554444 567777777654
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.37 E-value=2.8e-06 Score=79.75 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=71.6
Q ss_pred EeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCC
Q 003399 160 VGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMP 239 (823)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 239 (823)
+|++...+.+...+.... .+.+.|+|.+|+||||+|+.+++ .....-..++++. .++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLN--ASDLLEGLVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEe--hhhhhhhhHHHHHhhhh---
Confidence 367788888888876543 56888999999999999999998 3322223556666 44433222111111000
Q ss_pred CCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh-----hhHHHHHhcCCCC---CCCcEEEEeeCcc
Q 003399 240 SSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI-----RMWDVIREILPDN---QNGSRVLITLTDI 303 (823)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~-----~~~~~l~~~~~~~---~~gs~IivTTR~~ 303 (823)
............+..+||+||++.. ..+..+....... ..+..||+||...
T Consensus 72 -------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 -------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred -------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011112223457789999999864 2233333333221 3578888888764
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=2.8e-07 Score=71.95 Aligned_cols=60 Identities=35% Similarity=0.415 Sum_probs=53.6
Q ss_pred CcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcc
Q 003399 520 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYI 579 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 579 (823)
++|++|++++|.+..+|. .+..+.+|++|++++|.+..+|+..|.++++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999998874 678899999999999999999987779999999999999864
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.35 E-value=1.5e-07 Score=95.62 Aligned_cols=240 Identities=20% Similarity=0.183 Sum_probs=152.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCC----cccccc-------ccCccccceeeccCCCCc---
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVL----IQYPSG-------IENLFLLRYLKLNIPSLK--- 556 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l----~~lp~~-------i~~L~~Lr~L~L~~~~i~--- 556 (823)
...+..+.++++....--.......+.+-+.||.-++++.-. .++|+. +-.+.+|++|+||.|-+.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 566777777777654212244556778888999999986531 245543 345569999999998665
Q ss_pred --ccchhhhhcCCCccEEeCCCCcccccc--------------hhhcCCCCCceeeccCcccCCCCCCCcCCCcccceee
Q 003399 557 --SLPSSLLSNLLNLYTLDMPFSYIDHTA--------------DEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFIS 620 (823)
Q Consensus 557 --~lp~~i~~~L~~L~~L~L~~~~l~~lp--------------~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~ 620 (823)
.+-.- +.+++.|+.|.|.+|.+...- +.+.+-++||.+..+.|.+....
T Consensus 109 ~~~l~~l-l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g-------------- 173 (382)
T KOG1909|consen 109 IRGLEEL-LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG-------------- 173 (382)
T ss_pred hHHHHHH-HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc--------------
Confidence 22233 378999999999999764321 22445677888877777654321
Q ss_pred ccCCCcccccccCCCCccceEEeecccc--cchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeC-CcCcccCccEeEe
Q 003399 621 ALHPCCCTEDILGRLPNLRNLRIQGDLS--YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALA-EYLFPHSLTHLSF 697 (823)
Q Consensus 621 ~~~~~~~~~~~l~~l~~L~~L~i~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~-~~~~~~~L~~L~L 697 (823)
...+...+...+.|+.+.+..+.. .....+...+..+++|+.|+|..|. +..--...+. -++.+++|+.|++
T Consensus 174 ----a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 174 ----ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ----HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecc
Confidence 112333366667777777766641 2334566778888888888887652 1000000000 0145678888888
Q ss_pred ecccCCCCCcccc-----cCCCCCCeEEeecCccCCcc---ccccCCCCCcccEEeeecCC
Q 003399 698 SNTVLMDDPMPTL-----EKLPLLQVLKLKQNSYSGRK---LTCGSYGFPNLKVLHLKSML 750 (823)
Q Consensus 698 ~~~~l~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~ 750 (823)
++|.+.......+ ...|+|+.|.+.+|.++.+. +.......|.|+.|+|++|.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8998766544332 24789999999988765422 22334558999999999885
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.1e-07 Score=92.29 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=37.4
Q ss_pred ccCccEeEeecccCCCC-CcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce
Q 003399 689 PHSLTHLSFSNTVLMDD-PMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW 755 (823)
Q Consensus 689 ~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 755 (823)
++|+..+-+..|.+... .-.....+|.+-.|+|..+++..-.-...+.+||+|..|.+.++|.+..+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 45555555555544221 12234456666677776665554333445667777777777776655544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=3e-08 Score=96.83 Aligned_cols=249 Identities=20% Similarity=0.165 Sum_probs=166.5
Q ss_pred hcCCCcceEEEccCCCCc-----cccccccCccccceeeccCCCCc----ccchhh------hhcCCCccEEeCCCCccc
Q 003399 516 YGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK----SLPSSL------LSNLLNLYTLDMPFSYID 580 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i------~~~L~~L~~L~L~~~~l~ 580 (823)
+..+..+..++||+|.|. .+-..|.+-.+|+..+++.-... ++|.++ +-+|++||+.+|++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344888999999999876 45556667788999988863211 344332 268999999999999443
Q ss_pred -ccc----hhhcCCCCCceeeccCcccCCCCCCCcCC-CcccceeeccCCCcccccccCCCCccceEEeeccc--ccchh
Q 003399 581 -HTA----DEFWKMNKLRHLNFGSITLPAHPGKYCGS-LENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL--SYNQS 652 (823)
Q Consensus 581 -~lp----~~i~~L~~L~~L~l~~~~~~~~~~~~i~~-L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~--~~~~~ 652 (823)
+.| ..|++-+.|.||.+++|.+.......|++ |+.|.+. .. ..+-|.|+...+..++ +....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n---------KK-aa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN---------KK-AADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH---------hh-hccCCCceEEEeccchhccCcHH
Confidence 333 35788899999999998765432224444 4443221 11 4456677777666554 22333
Q ss_pred hHHHhhcCCCCCcEEEeecCC-CCCCCcEEeeCCcCcccCccEeEeecccCCCCCcc----cccCCCCCCeEEeecCccC
Q 003399 653 LLSKSLCRLSCLESLKLANES-KMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMP----TLEKLPLLQVLKLKQNSYS 727 (823)
Q Consensus 653 ~l~~~l~~l~~L~~L~l~~~~-~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~~~~~ 727 (823)
.....+....+|+.+.+..|. .+..+..|.+.|...+.+|+.|+|..|.++..... .+..++.|+.|.+..|-.+
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 344455555789999998875 34456666666667789999999999988654433 3566788999999988665
Q ss_pred Ccccc-----ccCCCCCcccEEeeecCCCCcce-------eecccccccccEEEeecCC
Q 003399 728 GRKLT-----CGSYGFPNLKVLHLKSMLWLEEW-------TMGNAAMPKLECLIINPCA 774 (823)
Q Consensus 728 ~~~~~-----~~~~~~~~L~~L~L~~~~~l~~~-------~~~~~~lp~L~~L~i~~C~ 774 (823)
..... +.-..+|+|..|.+.++..-..+ .+..+++|-|..|.+.++.
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 43221 22345899999998876532221 1345789999999998876
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=5.1e-07 Score=100.36 Aligned_cols=105 Identities=29% Similarity=0.336 Sum_probs=89.3
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCC-cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFK-LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~-~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
.+.+..|.+..+.... .+.....++ +|+.|+++++.+..+|..++.+++|+.|+++.|++..+|... +.+.+|
T Consensus 115 ~~~l~~L~l~~n~i~~-----i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L 188 (394)
T COG4886 115 LTNLTSLDLDNNNITD-----IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNL 188 (394)
T ss_pred ccceeEEecCCccccc-----CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhh
Confidence 4567788877776543 234445553 899999999999999888999999999999999999999987 799999
Q ss_pred cEEeCCCCcccccchhhcCCCCCceeeccCcc
Q 003399 570 YTLDMPFSYIDHTADEFWKMNKLRHLNFGSIT 601 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 601 (823)
+.|+++++.+..+|..+..+..|..|.+++|.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 99999999999999988888889999998885
No 53
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.28 E-value=9.6e-06 Score=84.98 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=68.3
Q ss_pred HHHHHHHHHcC-CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCc
Q 003399 166 MEELLDLLIEG-PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLS 244 (823)
Q Consensus 166 ~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~ 244 (823)
.+++...+... .....++.|+|.+|+||||+++.+++.... ..+ ..+|+. ....+..+++..|...++.+..
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~---~~~~~~~~~l~~i~~~lG~~~~-- 100 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLV---NTRVDAEDLLRMVAADFGLETE-- 100 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeee---CCCCCHHHHHHHHHHHcCCCCC--
Confidence 34445544322 223558999999999999999999984321 121 233444 3345778899999988876432
Q ss_pred ccccCCHHHHHHHHHHH----h-cCCcEEEEEecCCCh--hhHHHHHh
Q 003399 245 EIEDKNYEMKKIILHEY----I-MTKRYLIVIDDVWTI--RMWDVIRE 285 (823)
Q Consensus 245 ~~~~~~~~~~~~~l~~~----L-~~kr~LlVlDdvw~~--~~~~~l~~ 285 (823)
..+.......+.+. . .+++++||+||+|.. ..++.+..
T Consensus 101 ---~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 101 ---GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHH
Confidence 12222333333332 2 578899999999885 35666553
No 54
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=8.6e-07 Score=93.67 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=61.8
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC--CHHHHHHHHHHHhCCCC-CCcccccCC-HHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY--DADQIVDIIIKFLMPSS-RLSEIEDKN-YEMKKI 256 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~~-~~~~~~ 256 (823)
...+|+|.+|+||||||++||++.... +|+.++||. +++.+ ++.++++.|...+-... +.+...... ......
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~Vv--LIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVL--LIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEE--EeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999954433 899999999 99888 78888888863221111 100000000 111111
Q ss_pred HHHHH-hcCCcEEEEEecCCCh
Q 003399 257 ILHEY-IMTKRYLIVIDDVWTI 277 (823)
Q Consensus 257 ~l~~~-L~~kr~LlVlDdvw~~ 277 (823)
.-..+ -.+++++|++|++...
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHH
Confidence 22222 2579999999999654
No 55
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.27 E-value=9.7e-07 Score=86.73 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=33.8
Q ss_pred CeEeccccHHHHHHHHHc-CCCCeEEEEEEecCCchHHHHHHHHhCCcccccC
Q 003399 158 DTVGLDDRMEELLDLLIE-GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY 209 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 209 (823)
.||||+++.+++...|.. .....+.+.|+|.+|+|||+|+++++. ++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 479999999999999942 234579999999999999999999998 44443
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=2.6e-06 Score=99.41 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=76.8
Q ss_pred cceEEEccCCCCc-cccccccCccccceeeccCCCCc-ccchhhhhcCCCccEEeCCCCccc-ccchhhcCCCCCceeec
Q 003399 521 LLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYID-HTADEFWKMNKLRHLNF 597 (823)
Q Consensus 521 ~LrvL~L~~~~l~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l 597 (823)
.++.|+|+++.+. .+|..+++|.+|++|+|++|.+. .+|..+ +.+.+|++|+|++|.+. .+|..+++|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999999987 78999999999999999999987 788887 99999999999999887 56888999999999999
Q ss_pred cCcccCCCCCCCc
Q 003399 598 GSITLPAHPGKYC 610 (823)
Q Consensus 598 ~~~~~~~~~~~~i 610 (823)
++|.+.+..+..+
T Consensus 498 s~N~l~g~iP~~l 510 (623)
T PLN03150 498 NGNSLSGRVPAAL 510 (623)
T ss_pred cCCcccccCChHH
Confidence 9998775443333
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.16 E-value=1.5e-06 Score=92.87 Aligned_cols=247 Identities=17% Similarity=0.092 Sum_probs=132.5
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDII 233 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 233 (823)
.+|||+++.++.+..++... ......+.++|++|+|||+||+.+.+ +....| ..+. .+....... +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~--~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITS--GPALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEec--cchhcCchh-HHHH
Confidence 57999999999999888642 22355678999999999999999998 443332 1222 111111112 2222
Q ss_pred HHHhCCCCC--CcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh----
Q 003399 234 IKFLMPSSR--LSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT---- 307 (823)
Q Consensus 234 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~---- 307 (823)
+..+....- ..+.+... ......+...+.+.+..+|+|+..+..+|.. +++ +.+-|..|||...+..
T Consensus 76 l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHh
Confidence 333322110 00011111 1234456666777777788887766644421 222 2566777777654433
Q ss_pred -c---cccc------------CC-C-CCCCChhhhHHhHHHHcCCcceeeee-eccccccc---------ccCCcCCHHH
Q 003399 308 -S---FQLE------------DG-E-NIRLDLVPTGGPLRATYKGWPFFILY-HGSISLEE---------NIGEAVEIPL 359 (823)
Q Consensus 308 -~---~~f~------------~~-~-~~~~~~~~~~~~i~~~c~GlPLai~~-~~~~~~~~---------~~~~~~~i~~ 359 (823)
+ +.|. .. . ....--.+....|++.|+|.|-.+.. ...+ +.. .......+..
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-~~~a~~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV-RDFAQVRGQKIINRDIALKALE 227 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH-HHHHHHcCCCCcCHHHHHHHHH
Confidence 1 0011 00 0 00111234567899999999954422 1111 111 0011123344
Q ss_pred HHHhcccCCCCCCchhHhh-hhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHH-HHHhcCceeee
Q 003399 360 VLRYFKYCSLPFCLKPCFL-YLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLE-QLIKEGFVEAK 428 (823)
Q Consensus 360 ~l~~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~-~L~~~sll~~~ 428 (823)
.+ ..+|..++++.+.-+. ..+.++.+ .+..+++.... |. ....++..++ .|++++|+...
T Consensus 228 ~l-~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~----~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 228 ML-MIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE----DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC----CcchHHHhhhHHHHHcCCcccC
Confidence 46 7788888888766555 55666544 45544443322 21 1234667777 69999999643
No 58
>PF13173 AAA_14: AAA domain
Probab=98.15 E-value=3.9e-06 Score=76.81 Aligned_cols=101 Identities=15% Similarity=0.245 Sum_probs=68.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
.+++.|.|+-|+|||||+++++++.. ....+++++ ......... .+.+ ....+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~--~~~~~~~~~--------------------~~~~-~~~~~~ 55 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYIN--FDDPRDRRL--------------------ADPD-LLEYFL 55 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeec--cCCHHHHHH--------------------hhhh-hHHHHH
Confidence 46899999999999999999997422 334556666 333211000 0000 233344
Q ss_pred HHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhh
Q 003399 260 EYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMV 306 (823)
Q Consensus 260 ~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 306 (823)
+....++.+|+||++....+|......+.+..+..+|++|+.+....
T Consensus 56 ~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 56 ELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 44445788999999999888888877777666678999999876554
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.14 E-value=9.8e-06 Score=87.26 Aligned_cols=249 Identities=16% Similarity=0.058 Sum_probs=130.3
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDII 233 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 233 (823)
.+|+|+++.++.+..++... ......+.|+|++|+||||||+.+.+ +....|. ++. .+ .......+..+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~~---~~~--~~-~~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNIR---ITS--GP-ALEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCeE---EEe--cc-cccChHHHHHH
Confidence 67999999999998887642 33456788999999999999999998 4433321 122 11 11112223333
Q ss_pred HHHhCCCCCC--cccccCCHHHHHHHHHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh----
Q 003399 234 IKFLMPSSRL--SEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT---- 307 (823)
Q Consensus 234 ~~~l~~~~~~--~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~---- 307 (823)
+..+....-. .+.+..+ ......+...+.+.+..+|+|+..+...+. ..++ +.+-|..|||...+..
T Consensus 97 l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHHH
Confidence 3333221100 0001111 112333455555666666776655443211 1111 2455667777544433
Q ss_pred -c-c--------------cccCC-C-CCCCChhhhHHhHHHHcCCcceeeee-eccc-cc-------ccccCCcCCHHHH
Q 003399 308 -S-F--------------QLEDG-E-NIRLDLVPTGGPLRATYKGWPFFILY-HGSI-SL-------EENIGEAVEIPLV 360 (823)
Q Consensus 308 -~-~--------------~f~~~-~-~~~~~~~~~~~~i~~~c~GlPLai~~-~~~~-~~-------~~~~~~~~~i~~~ 360 (823)
+ + ++... . ....--.+....|++.|+|.|-.+.. .+.. .+ .+...........
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 1 1 11100 0 11111234678999999999943332 1100 00 0000112234455
Q ss_pred HHhcccCCCCCCchhHhh-hhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHH-HHHhcCceeeee
Q 003399 361 LRYFKYCSLPFCLKPCFL-YLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLE-QLIKEGFVEAKK 429 (823)
Q Consensus 361 l~~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~-~L~~~sll~~~~ 429 (823)
+ ...|..|++..+.-+. ....|+.+ .+..+.+.... |. ..+.+++.++ .|++.+|++...
T Consensus 250 ~-~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g~----~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 250 L-GVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---GE----ERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred h-CCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---CC----CcchHHHHhhHHHHHcCCcccCC
Confidence 6 6778888887777664 66677766 45655543332 11 1234555666 899999997443
No 60
>PTZ00202 tuzin; Provisional
Probab=98.09 E-value=3.4e-05 Score=82.07 Aligned_cols=74 Identities=15% Similarity=0.102 Sum_probs=58.4
Q ss_pred CCeEeccccHHHHHHHHHcCC-CCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGP-PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 235 (823)
..|+||+.+...+...|...+ ...+++.|.|++|+|||||++.+... .. + .+++. -.. +..++++.|+.
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~--~qL~v--Npr--g~eElLr~LL~ 331 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M--PAVFV--DVR--GTEDTLRSVVK 331 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c--eEEEE--CCC--CHHHHHHHHHH
Confidence 799999999999999997543 23569999999999999999999973 22 2 24443 222 67899999999
Q ss_pred HhCCC
Q 003399 236 FLMPS 240 (823)
Q Consensus 236 ~l~~~ 240 (823)
+|+.+
T Consensus 332 ALGV~ 336 (550)
T PTZ00202 332 ALGVP 336 (550)
T ss_pred HcCCC
Confidence 99973
No 61
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.07 E-value=8.1e-06 Score=83.41 Aligned_cols=55 Identities=25% Similarity=0.315 Sum_probs=40.5
Q ss_pred eEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 159 TVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
|+||++++++|.+++..+. ...+.|+|..|+|||+|++++.+ ..+..-..++|+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~ 55 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYID 55 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHC
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEe
Confidence 6899999999999998754 67889999999999999999998 4433222455555
No 62
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.05 E-value=3.5e-05 Score=87.80 Aligned_cols=269 Identities=17% Similarity=0.161 Sum_probs=157.4
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCCCC-
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSSRL- 243 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~~~- 243 (823)
+.++.+.|... .+.+.+.|.-++|.|||||+..... +.. .=..+.|.+ .++.- |..++...++..++.-.+.
T Consensus 24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wls--lde~dndp~rF~~yLi~al~~~~p~~ 97 (894)
T COG2909 24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLS--LDESDNDPARFLSYLIAALQQATPTL 97 (894)
T ss_pred cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEee--cCCccCCHHHHHHHHHHHHHHhCccc
Confidence 45667767654 2589999999999999999999874 222 223689999 87654 6778888888888742210
Q ss_pred -cc-------cccCCHHHHHHHHHHHhcC--CcEEEEEecCCCh---hhHHHHHhcCCCCCCCcEEEEeeCcchhhh---
Q 003399 244 -SE-------IEDKNYEMKKIILHEYIMT--KRYLIVIDDVWTI---RMWDVIREILPDNQNGSRVLITLTDIEMVT--- 307 (823)
Q Consensus 244 -~~-------~~~~~~~~~~~~l~~~L~~--kr~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~IivTTR~~~v~~--- 307 (823)
.+ ....+...+...+..-+.+ ++..+||||---. .--..+...+....++-..|||||+.--..
T Consensus 98 ~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 98 GDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccc
Confidence 00 1223444555566655553 7899999997432 222333333344456779999999864322
Q ss_pred --------cc-----cccCCC--------CCCCChhhhHHhHHHHcCCcceeeee----ec---cccccccc--CCcCCH
Q 003399 308 --------SF-----QLEDGE--------NIRLDLVPTGGPLRATYKGWPFFILY----HG---SISLEENI--GEAVEI 357 (823)
Q Consensus 308 --------~~-----~f~~~~--------~~~~~~~~~~~~i~~~c~GlPLai~~----~~---~~~~~~~~--~~~~~i 357 (823)
++ +|..++ ...+--..-.+.+.+...|-+-|+.. .+ +....+.. .....+
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l 257 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHL 257 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHH
Confidence 01 443320 10111123345555555555544443 11 00000000 111122
Q ss_pred HHHHHhcccCCCCCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCcEe
Q 003399 358 PLVLRYFKYCSLPFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEAKKRKAGGTIN 437 (823)
Q Consensus 358 ~~~l~~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~g~~~ 437 (823)
...|-.--++.||+++|.-++-||+++.= . ..|+.-- +-++-|...+++|.+++|+-..-.+ ...
T Consensus 258 ~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L--------tg~~ng~amLe~L~~~gLFl~~Ldd---~~~ 322 (894)
T COG2909 258 SDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL--------TGEENGQAMLEELERRGLFLQRLDD---EGQ 322 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH--------hcCCcHHHHHHHHHhCCCceeeecC---CCc
Confidence 22221334688999999988899998642 2 2233222 2234488899999999987643322 226
Q ss_pred eEEcCcchHHHHHhcCCc
Q 003399 438 TCSIPGCWRPVLLLVPPE 455 (823)
Q Consensus 438 ~~~mHdlv~d~a~~~~~~ 455 (823)
-|+.|.+..+|.+.....
T Consensus 323 WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 323 WFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eeehhHHHHHHHHhhhcc
Confidence 799999999998876554
No 63
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.03 E-value=2.8e-05 Score=89.14 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=78.7
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhCCccc---ccCcc--eeEEEeCCCCCCCCHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYNSSYV---KHYFD--CHAWISEPYSNEYDADQ 228 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~vs~~~~~~~ 228 (823)
+.++||++++++|...|... .....++-|+|.+|.|||+.++.|.+..+- +...+ .+++|. ...-.+...
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN--Cm~Lstp~s 832 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN--GMNVVHPNA 832 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe--CCccCCHHH
Confidence 57999999999999988652 223467889999999999999999873211 11122 245666 555567888
Q ss_pred HHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhc---CCcEEEEEecCCCh
Q 003399 229 IVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM---TKRYLIVIDDVWTI 277 (823)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdvw~~ 277 (823)
+...|+.++....+ .......+....+...+. +...+||||+|+..
T Consensus 833 IYqvI~qqL~g~~P---~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 833 AYQVLYKQLFNKKP---PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHHHcCCCC---CccccHHHHHHHHHhhhhcccccceEEEeehHhhh
Confidence 99999999965432 122333445555555552 23458999999754
No 64
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.98 E-value=1.2e-05 Score=85.79 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=62.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC--CCHHHHHHHHHHHhCCCC-CCcccccCCH-HHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE--YDADQIVDIIIKFLMPSS-RLSEIEDKNY-EMKK 255 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~-~~~~ 255 (823)
-..++|+|.+|.|||||++.+++.... .+|+..+||. ++++ .++.++++.+...+-... +.+....... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~Vl--LIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVL--LIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEE--EcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 457899999999999999999995322 3799999999 8866 789999999854332211 1000011111 1112
Q ss_pred HHHHHH-hcCCcEEEEEecCCCh
Q 003399 256 IILHEY-IMTKRYLIVIDDVWTI 277 (823)
Q Consensus 256 ~~l~~~-L~~kr~LlVlDdvw~~ 277 (823)
.....+ -++++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222222 2579999999999654
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2e-06 Score=95.93 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=53.4
Q ss_pred hcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCcee
Q 003399 516 YGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 595 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 595 (823)
+..++.|..|++.++.|..+...+..+.+|++|++++|.|..+.. + ..+..|+.|++.+|.+..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 456666667777766666665556666677777777766666653 2 566666677776666665542 4446666666
Q ss_pred eccCcccC
Q 003399 596 NFGSITLP 603 (823)
Q Consensus 596 ~l~~~~~~ 603 (823)
++++|.+.
T Consensus 168 ~l~~n~i~ 175 (414)
T KOG0531|consen 168 DLSYNRIV 175 (414)
T ss_pred cCCcchhh
Confidence 66666544
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=5.5e-06 Score=82.46 Aligned_cols=224 Identities=15% Similarity=0.202 Sum_probs=125.4
Q ss_pred cceEEEccCCCCcccc--cccc-CccccceeeccCCCCccc--chhhhhcCCCccEEeCCCCcccccchhh-cCCCCCce
Q 003399 521 LLRVLDLGSLVLIQYP--SGIE-NLFLLRYLKLNIPSLKSL--PSSLLSNLLNLYTLDMPFSYIDHTADEF-WKMNKLRH 594 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp--~~i~-~L~~Lr~L~L~~~~i~~l--p~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 594 (823)
.+..|-+.++.|...- ..|+ ...+++.|+|.+|.|..- ...|+.+|+.|++|+|+.|.+...-..+ -.+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3446666666665221 2233 356788888888776622 1233467777777777777554322111 24456677
Q ss_pred eeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCC
Q 003399 595 LNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESK 674 (823)
Q Consensus 595 L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 674 (823)
|-|.++++... .....+..++.++.|.++.+ +++.+.+..+-
T Consensus 126 lVLNgT~L~w~---------------------~~~s~l~~lP~vtelHmS~N----------------~~rq~n~Dd~c- 167 (418)
T KOG2982|consen 126 LVLNGTGLSWT---------------------QSTSSLDDLPKVTELHMSDN----------------SLRQLNLDDNC- 167 (418)
T ss_pred EEEcCCCCChh---------------------hhhhhhhcchhhhhhhhccc----------------hhhhhcccccc-
Confidence 76655554321 11122455555555555443 12222222110
Q ss_pred CCCCcEEeeCCcCcccCccEeEeecccCCC--CCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCC
Q 003399 675 MPRLSKIALAEYLFPHSLTHLSFSNTVLMD--DPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL 752 (823)
Q Consensus 675 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 752 (823)
.+ ..-+.+.+|++..|.... .....-.-+|++..+.+..|.+...........||.+-.|.|..+ ++
T Consensus 168 ---~e-------~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~i 236 (418)
T KOG2982|consen 168 ---IE-------DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NI 236 (418)
T ss_pred ---cc-------ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-cc
Confidence 00 011223333333332100 001112347899999999887666555566777999999999875 57
Q ss_pred ccee--ecccccccccEEEeecCCCCCCCch------hccCCCCCcEEE
Q 003399 753 EEWT--MGNAAMPKLECLIINPCAYLKKMPE------QLWCIKSLNKFD 793 (823)
Q Consensus 753 ~~~~--~~~~~lp~L~~L~i~~C~~l~~lp~------~l~~l~~L~~L~ 793 (823)
.+|. .....||.|..|.+.+.|....+-- .+..+++++.|+
T Consensus 237 dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 237 DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 7774 3567899999999999997764421 356677777775
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.2e-05 Score=57.43 Aligned_cols=38 Identities=37% Similarity=0.421 Sum_probs=20.4
Q ss_pred ccceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc
Q 003399 544 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT 582 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l 582 (823)
+|++|++++|.|+.+|+.+ ++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCC
Confidence 4555555555555555555 5555555555555555544
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.5e-05 Score=56.99 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=36.0
Q ss_pred CcceEEEccCCCCccccccccCccccceeeccCCCCcccch
Q 003399 520 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPS 560 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 560 (823)
++|++|++++|.|+.+|..+++|++|++|++++|.|+.+|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999999999889999999999999999988764
No 69
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00011 Score=79.19 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=85.7
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcce--eEEEeCCCCCCCCHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDC--HAWISEPYSNEYDADQIVDI 232 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~vs~~~~~~~~~~~ 232 (823)
..+.+|+++++++...|..- +....-+-|+|..|.|||+.++.+.+ +++..... +++|. +-......+++.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yIN--c~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYIN--CLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEe--eeeCCCHHHHHHH
Confidence 46999999999999888652 21233388999999999999999998 55544321 67777 7777889999999
Q ss_pred HHHHhCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCCh
Q 003399 233 IIKFLMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTI 277 (823)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~ 277 (823)
|+.+++... .......+....+.+.+. ++.+++|||+++..
T Consensus 93 i~~~~~~~p----~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 93 ILNKLGKVP----LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHcCCCC----CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 999997321 133455666777777775 48899999999765
No 70
>PLN03150 hypothetical protein; Provisional
Probab=97.83 E-value=2.6e-05 Score=91.16 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=38.5
Q ss_pred ccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccc-cccccE
Q 003399 689 PHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAA-MPKLEC 767 (823)
Q Consensus 689 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~-lp~L~~ 767 (823)
+++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.....+|..++. +.++..
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 4445555555554444444444555555555555444443 23334444455555555544322233333322 123444
Q ss_pred EEeecCCCC
Q 003399 768 LIINPCAYL 776 (823)
Q Consensus 768 L~i~~C~~l 776 (823)
+.+.+|+.+
T Consensus 520 l~~~~N~~l 528 (623)
T PLN03150 520 FNFTDNAGL 528 (623)
T ss_pred EEecCCccc
Confidence 444444433
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.81 E-value=3.8e-05 Score=85.35 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=35.4
Q ss_pred CCeEeccccHHH---HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEE---LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++||.+..+.. +.+++..+. ...+.++|.+|+||||+|+.+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 568888777555 777776544 56788899999999999999998
No 72
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.81 E-value=8.2e-05 Score=77.14 Aligned_cols=115 Identities=14% Similarity=0.221 Sum_probs=82.5
Q ss_pred CCeEeccccHHHHHHHHHcCCC-CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPP-QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 235 (823)
+.+.+|+..+..+..++...+. -+..|-|+|-.|.|||.+.+++++.. .. ..+|++ +-+.|+.+.++..|+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n--~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLN--CVECFTYAILLEKILN 78 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeee--hHHhccHHHHHHHHHH
Confidence 6789999999999999887664 35566899999999999999999843 32 358999 9999999999999999
Q ss_pred HhCCCCCCcc-ccc--CCHHHHHHHHHH--Hhc--CCcEEEEEecCCChh
Q 003399 236 FLMPSSRLSE-IED--KNYEMKKIILHE--YIM--TKRYLIVIDDVWTIR 278 (823)
Q Consensus 236 ~l~~~~~~~~-~~~--~~~~~~~~~l~~--~L~--~kr~LlVlDdvw~~~ 278 (823)
+.+.....+. .+. .+..+....+.+ ... ++.++||||+++...
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 9963221111 111 222223333333 122 468999999997654
No 73
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1.3e-05 Score=93.18 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc--cccccccCccccceeeccCCCCcccchhhhhcCCC
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 568 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 568 (823)
..+|+.|.+.+.... ...++...-..+|.||.|.+++-.+. ++..-..++++|+.||+|+|+++.+ ..+ ++|+|
T Consensus 121 r~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HHhhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 344555555443321 23344445555566666666655432 3333344555666666666666655 344 66666
Q ss_pred ccEEeCCCCcccccc--hhhcCCCCCceeeccCcc
Q 003399 569 LYTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSIT 601 (823)
Q Consensus 569 L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 601 (823)
||+|.+++-.+..-. ..+.+|++|++||+|...
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 666666555444321 345566666666666543
No 74
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.78 E-value=0.00075 Score=78.40 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=88.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc---ceeEEEeCCCCC---CCCHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWISEPYSN---EYDADQIV 230 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs~---~~~~~~~~ 230 (823)
++++|++..+..+.+.+.... ...+.|+|.+|+||||+|+.+++.......+ ...-|+. +.. ..+...+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~--i~~~~l~~d~~~i~ 229 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE--VDGTTLRWDPREVT 229 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE--EechhccCCHHHHh
Confidence 579999999999888875433 5679999999999999999998754333333 1234554 432 12233322
Q ss_pred HHH---------------HHHhCCCCC--------------CcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hh
Q 003399 231 DII---------------IKFLMPSSR--------------LSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RM 279 (823)
Q Consensus 231 ~~i---------------~~~l~~~~~--------------~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~ 279 (823)
..+ +...+.... ..+.+..+ ...+..+.+.+++++++++-|+.|.. ..
T Consensus 230 ~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 230 NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 211 111111000 00011222 33578889999999999998877765 36
Q ss_pred HHHHHhcCCCCCCCcEEEE--eeCcch
Q 003399 280 WDVIREILPDNQNGSRVLI--TLTDIE 304 (823)
Q Consensus 280 ~~~l~~~~~~~~~gs~Iiv--TTR~~~ 304 (823)
|+.+...+....+...|+| ||++..
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~ 335 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPE 335 (615)
T ss_pred chhhhhhcccCccceEEEEEecccccc
Confidence 8888877776666666666 566543
No 75
>PRK06893 DNA replication initiation factor; Validated
Probab=97.78 E-value=3.9e-05 Score=77.89 Aligned_cols=36 Identities=11% Similarity=-0.012 Sum_probs=28.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
...+.++|..|+|||+||+++++ +.......+.|++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEee
Confidence 45789999999999999999998 4444445667777
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=6.8e-05 Score=80.48 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=55.9
Q ss_pred hcCCCcceEEEccCCCCccccccccCccccceeeccCC-CCcccchhhhhcCCCccEEeCCCC-cccccchhhcCCCCCc
Q 003399 516 YGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP-SLKSLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLR 593 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~-~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~ 593 (823)
+..++.++.|++++|.+..+|. + ..+|+.|.+++| .+..+|..+ ..+|+.|++++| .+..+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cc
Confidence 5557889999999999888883 2 246999999886 477888655 358999999999 88888764 56
Q ss_pred eeeccCcc
Q 003399 594 HLNFGSIT 601 (823)
Q Consensus 594 ~L~l~~~~ 601 (823)
+|++.++.
T Consensus 116 ~L~L~~n~ 123 (426)
T PRK15386 116 SLEIKGSA 123 (426)
T ss_pred eEEeCCCC
Confidence 66665443
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=5.3e-06 Score=92.50 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=53.2
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
+.++..|.+.++.... ....+..|++|++|++++|.|.++.. +..+..|+.|++++|.|..++. +..+.+|+
T Consensus 94 ~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDISG--LESLKSLK 165 (414)
T ss_pred ccceeeeeccccchhh-----cccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhccC--Cccchhhh
Confidence 4555555555544321 11114455556666666665554432 4455556666666665555543 13455566
Q ss_pred EEeCCCCcccccchh-hcCCCCCceeeccCccc
Q 003399 571 TLDMPFSYIDHTADE-FWKMNKLRHLNFGSITL 602 (823)
Q Consensus 571 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 602 (823)
.+++++|.+..+... +..+.+|+.+++++|.+
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 666666555555432 35555555555555544
No 78
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.73 E-value=0.00017 Score=86.57 Aligned_cols=286 Identities=14% Similarity=0.115 Sum_probs=149.2
Q ss_pred CeEeccccHHHHHHHHHcC-CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe-CCCCCCC---CHHHHHHH
Q 003399 158 DTVGLDDRMEELLDLLIEG-PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS-EPYSNEY---DADQIVDI 232 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~~vs~~~---~~~~~~~~ 232 (823)
.++||+.+.+.|...+... ...-.|+.+.|..|||||+|+++|.+ .+.+.+...+--. +...... ...+.+++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 3789999999999988764 33467999999999999999999998 5554422111110 0011111 23344445
Q ss_pred HHHHhCCCCCC------------------------c-------------ccccCCHHH-----HHHHHHHHhc-CCcEEE
Q 003399 233 IIKFLMPSSRL------------------------S-------------EIEDKNYEM-----KKIILHEYIM-TKRYLI 269 (823)
Q Consensus 233 i~~~l~~~~~~------------------------~-------------~~~~~~~~~-----~~~~l~~~L~-~kr~Ll 269 (823)
++.++....+. | +........ ....+..+.. .++..+
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 55444221100 0 001111111 2223333333 469999
Q ss_pred EEecC-CChh-hH---HHHHhcCCC-CCCCcEEEEeeCcchhhh-------c---c---ccc---------CC-CCCCCC
Q 003399 270 VIDDV-WTIR-MW---DVIREILPD-NQNGSRVLITLTDIEMVT-------S---F---QLE---------DG-ENIRLD 320 (823)
Q Consensus 270 VlDdv-w~~~-~~---~~l~~~~~~-~~~gs~IivTTR~~~v~~-------~---~---~f~---------~~-~~~~~~ 320 (823)
|+||+ |-.. .+ +.+.....- ...-..|..+........ . + .+. .. +.....
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 99999 6442 22 222221110 000112222222211111 0 0 111 00 122345
Q ss_pred hhhhHHhHHHHcCCcceeeee--------------ecccccccc--c----CCcCCHHHHHHhcccCCCCCCchhHhhhh
Q 003399 321 LVPTGGPLRATYKGWPFFILY--------------HGSISLEEN--I----GEAVEIPLVLRYFKYCSLPFCLKPCFLYL 380 (823)
Q Consensus 321 ~~~~~~~i~~~c~GlPLai~~--------------~~~~~~~~~--~----~~~~~i~~~l~~~sy~~L~~~~k~cfl~~ 380 (823)
..+....|++|-+|.|+-+.- .+...|... . ...+++...+ ..-.+.||...++..-.-
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l-~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFL-AARLQKLPGTTREVLKAA 317 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHH-HHHHhcCCHHHHHHHHHH
Confidence 577899999999999998876 222222221 1 2223344457 788899999999999999
Q ss_pred cccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCC---cEe-eEEcCcchHHHHHhcCC
Q 003399 381 SVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEAKKRKAGG---TIN-TCSIPGCWRPVLLLVPP 454 (823)
Q Consensus 381 s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~g---~~~-~~~mHdlv~d~a~~~~~ 454 (823)
|++-..+ +.+.|...|-. .....+....+.|....++...+....+ ... +---||.+++.|-....
T Consensus 318 A~iG~~F--~l~~La~l~~~------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 318 ACIGNRF--DLDTLAALAED------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HHhCccC--CHHHHHHHHhh------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 9987655 45555554432 1234455555666555555433211111 111 11467888777765443
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00023 Score=76.19 Aligned_cols=127 Identities=15% Similarity=0.253 Sum_probs=82.0
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC----cccccCcceeEEEeCCC-CCCCCHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS----SYVKHYFDCHAWISEPY-SNEYDADQIVD 231 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~wv~~~v-s~~~~~~~~~~ 231 (823)
.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+++. .....|+|...|.. . +....+.+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~--~~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP--INKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc--ccCCCCCHHH-HH
Confidence 578898888999999887653 3467789999999999999988762 12245667666654 2 22233333 22
Q ss_pred HHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEe-cCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhh
Q 003399 232 IIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVID-DVWTIRMWDVIREILPDNQNGSRVLITLTDIEMV 306 (823)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlD-dvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 306 (823)
++.+.+.... ...++|++||=| |..+...++.+...+....+++.+|++|.+.+..
T Consensus 80 ~~~~~~~~~p-------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~l 136 (313)
T PRK05564 80 NIIEEVNKKP-------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQI 136 (313)
T ss_pred HHHHHHhcCc-------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhC
Confidence 3333332210 012345544444 4455678999999988877899999998766433
No 80
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00017 Score=82.48 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=75.2
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.++||.+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.-...++ +..+.....-+.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---------~~PCG~C~sCr~I~~G 85 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---------SQPCGVCRACREIDEG 85 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---------CCCCcccHHHHHHhcC
Confidence 579999999999999987653 345667999999999999998776311111110 1111111111111110
Q ss_pred hCCCCCCccc---ccCCHHHHHHHHHHH----hcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcchh
Q 003399 237 LMPSSRLSEI---EDKNYEMKKIILHEY----IMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIEM 305 (823)
Q Consensus 237 l~~~~~~~~~---~~~~~~~~~~~l~~~----L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v 305 (823)
-.. +..++ .....++....+... ..++.-++|||++... ..++.+...+.......++|+||++..-
T Consensus 86 ~h~--DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 86 RFV--DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred CCc--eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 000 00000 011122222222221 1245558889999876 4577777766655567888888777543
No 81
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.63 E-value=0.00012 Score=76.60 Aligned_cols=132 Identities=19% Similarity=0.225 Sum_probs=73.7
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCCCCcccc
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSSRLSEIE 247 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~ 247 (823)
|..++..+. +.-.-.||++|+||||||+.+.. .....|.. +|... .++++ +++++
T Consensus 39 lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-------~sAv~~gvkdl-r~i~e------------ 94 (436)
T COG2256 39 LRRAVEAGH--LHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-------LSAVTSGVKDL-REIIE------------ 94 (436)
T ss_pred HHHHHhcCC--CceeEEECCCCCCHHHHHHHHHH--hhCCceEE-------eccccccHHHH-HHHHH------------
Confidence 344444443 66667899999999999999998 56656632 22222 12221 12211
Q ss_pred cCCHHHHHHHH-HHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEE--eeCcchhhh-------cccccCCC
Q 003399 248 DKNYEMKKIIL-HEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLI--TLTDIEMVT-------SFQLEDGE 315 (823)
Q Consensus 248 ~~~~~~~~~~l-~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~Iiv--TTR~~~v~~-------~~~f~~~~ 315 (823)
.- +....++|.+|++|.|..- .+-+.+ +|.-.+|.-|+| ||-++.-.- |..|.-..
T Consensus 95 ---------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 95 ---------EARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKP 162 (436)
T ss_pred ---------HHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence 11 2223489999999999654 233333 344456777766 566553322 22333221
Q ss_pred CCCCChhhhHHh-HHHHcCCcc
Q 003399 316 NIRLDLVPTGGP-LRATYKGWP 336 (823)
Q Consensus 316 ~~~~~~~~~~~~-i~~~c~GlP 336 (823)
-...++..+..+ +.....|++
T Consensus 163 L~~~di~~~l~ra~~~~~rgl~ 184 (436)
T COG2256 163 LSSEDIKKLLKRALLDEERGLG 184 (436)
T ss_pred CCHHHHHHHHHHHHhhhhcCCC
Confidence 223344444444 667777877
No 82
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.62 E-value=9.2e-05 Score=75.29 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 163 DDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 163 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
+..++.+.+++... ....|.|+|..|+||||||+.+++ +........++++
T Consensus 23 ~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~ 73 (226)
T TIGR03420 23 AELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLP 73 (226)
T ss_pred HHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEe
Confidence 34566666665432 367889999999999999999998 3333344456666
No 83
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.60 E-value=0.00019 Score=78.00 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|++..++.+.+++..+. ...+-++|..|+||||+|+.+.+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887654 44678999999999999999887
No 84
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.60 E-value=0.00021 Score=77.67 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=73.2
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.++++.++..+.+...|... +.|.++|++|+|||++|+++++.......|+.+.||+ +++.++..++...+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt--FHpsySYeDFI~G~--- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ--FHQSYSYEDFIQGY--- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe--ecccccHHHHhccc---
Confidence 56888899999999998863 4678899999999999999998544445788899999 99998877665422
Q ss_pred hCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCChh
Q 003399 237 LMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTIR 278 (823)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~~ 278 (823)
..... . .... ..-....+.+.-. ++++.||+|++...+
T Consensus 246 -rP~~v-g-y~~~-~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 246 -RPNGV-G-FRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred -CCCCC-C-eEec-CchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 11100 0 0000 0111222222222 478999999997653
No 85
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0005 Score=74.96 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 579999999999999887653 346778999999999999999987
No 86
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=7e-05 Score=87.32 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=85.0
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccc--hhhhhcCCC
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLP--SSLLSNLLN 568 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~~L~~ 568 (823)
+|.||+|.+.+..... ......+.+|++|+.||+|+++++.+ ..+++|++|+.|.+++-.+..-+ ..+ .+|++
T Consensus 147 LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~ 221 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKK 221 (699)
T ss_pred CcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccC
Confidence 9999999998866532 23456789999999999999999988 67999999999999987766422 244 78999
Q ss_pred ccEEeCCCCcccccch-------hhcCCCCCceeeccCcccCC
Q 003399 569 LYTLDMPFSYIDHTAD-------EFWKMNKLRHLNFGSITLPA 604 (823)
Q Consensus 569 L~~L~L~~~~l~~lp~-------~i~~L~~L~~L~l~~~~~~~ 604 (823)
|++||+|.......+. --..||+||.||.+++.+..
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9999999874333332 11349999999999876554
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00041 Score=78.44 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=38.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|-+..++.+...+..+. -...+-++|..|+||||+|+.+++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887653 345678899999999999999976
No 88
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=0.00027 Score=73.26 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=59.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHE 260 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 260 (823)
..+.++|..|+|||.||.++++ .+..+-..+++++ ..+++..+......... .+ ...+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~--------~~~ll~~i~~~~~~~~~------~~----~~~~~~ 174 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN--------FPQLLNRIKSTYKSSGK------ED----ENEIIR 174 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE--------HHHHHHHHHHHHhcccc------cc----HHHHHH
Confidence 4588999999999999999999 5544444566666 34455555554432211 11 122334
Q ss_pred HhcCCcEEEEEecCC--ChhhHHH--HHhcCCC-CCCCcEEEEeeCc
Q 003399 261 YIMTKRYLIVIDDVW--TIRMWDV--IREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 261 ~L~~kr~LlVlDdvw--~~~~~~~--l~~~~~~-~~~gs~IivTTR~ 302 (823)
.+.+-. ||||||+- ...+|.. +...+.. -.+|..+||||..
T Consensus 175 ~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 175 SLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 445444 89999993 2334432 2222221 1245679999854
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.52 E-value=0.00019 Score=84.03 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=37.4
Q ss_pred CCeEeccccHH---HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRME---ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
++++|.+..+. .+.+++..+. ...+.++|++|+||||||+.+++ .....|
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 46899887764 4555555443 56678999999999999999998 444444
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=97.51 E-value=0.00053 Score=73.54 Aligned_cols=122 Identities=15% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccc-ccCcc-eeEEEeCCCCCCCCHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYV-KHYFD-CHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
.+++|.++.++.+.+++..+. ..-+-++|.+|+||||+|+.+.+ .. ...|. .++-+. .+...+.. ..++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~--~l~~~~~~~~~~eln--~sd~~~~~-~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAH--ELLGPNYKEAVLELN--ASDDRGID-VVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH--HHhcccCccceeeec--ccccccHH-HHHHHH
Confidence 578998888888888776544 44567999999999999999987 33 22232 122222 33322222 222222
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCc
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTD 302 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~ 302 (823)
..+..... . .-.++.-++++|++... ...+.+...+....+.+++++||..
T Consensus 86 ~~~~~~~~----~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 86 KMFAQKKV----T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHHHhccc----c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 22211100 0 00135668999999875 3344554444444456777777654
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=7.7e-05 Score=84.03 Aligned_cols=135 Identities=14% Similarity=0.065 Sum_probs=74.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.+++|-+...+.|..++..+. -...+.++|..|+||||+|+.+++...-...+...+|.| .+.. .+..-....+..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C--~sc~-~i~~~~h~dv~e 89 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC--ESCL-AVRRGAHPDVLE 89 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC--hhhH-HHhcCCCCceEE
Confidence 578999998888888887654 345679999999999999999987322122233344544 2110 000000000000
Q ss_pred hCCCCCCcccccCCHHHHHHHHHHHh-----cCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCc
Q 003399 237 LMPSSRLSEIEDKNYEMKKIILHEYI-----MTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTD 302 (823)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~ 302 (823)
+... .....+.. ..+.+.+ .+++-++|+|+++.. ..++.+...+........+|++|..
T Consensus 90 l~~~------~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 90 IDAA------SNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred eccc------ccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 0000 01112221 2222222 246668999999865 4677787777655555565555543
No 92
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.00065 Score=76.88 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999987654 345678899999999999999876
No 93
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.47 E-value=3.4e-05 Score=88.27 Aligned_cols=245 Identities=22% Similarity=0.135 Sum_probs=134.3
Q ss_pred hHHHhcCCCcceEEEccCCC-Ccc--ccccccCccccceeeccCC-C-Ccccc---hhhhhcCCCccEEeCCCCc-cccc
Q 003399 512 WEKIYGMFKLLRVLDLGSLV-LIQ--YPSGIENLFLLRYLKLNIP-S-LKSLP---SSLLSNLLNLYTLDMPFSY-IDHT 582 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~~-l~~--lp~~i~~L~~Lr~L~L~~~-~-i~~lp---~~i~~~L~~L~~L~L~~~~-l~~l 582 (823)
.......+++|+.|.+.++. +.. +-.....+.+|+.|+++++ . +...+ ..+...+++|+.|++++|. ++..
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 34455667888888888875 443 3345567788888888763 1 11111 1223566788888888884 5433
Q ss_pred -chhhc-CCCCCceeeccCcc-cCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhc
Q 003399 583 -ADEFW-KMNKLRHLNFGSIT-LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLC 659 (823)
Q Consensus 583 -p~~i~-~L~~L~~L~l~~~~-~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~ 659 (823)
-..+. .+++|++|.+.+|. ++ ...+..+...+++|++|+++.|.......+.....
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt---------------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLT---------------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccc---------------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 22232 37778888766554 22 22333435678889999999887554555555555
Q ss_pred CCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCC---CCcccccCCCCCCeEEeecCccCCccccccCC
Q 003399 660 RLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMD---DPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSY 736 (823)
Q Consensus 660 ~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 736 (823)
++++|+.|.+... ..++.++.+.+..+.... ...-.+..+++|+.+.|.++.......
T Consensus 319 ~c~~l~~l~~~~~--------------~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 379 (482)
T KOG1947|consen 319 NCPNLRELKLLSL--------------NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL----- 379 (482)
T ss_pred hCcchhhhhhhhc--------------CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch-----
Confidence 5666666554421 123445555554443211 112234567788888777665322211
Q ss_pred CCCcccEEeeecCCCC-cceeecccccccccEEEeecCCCCCCCch-hccC-CCCCcEEEecCCCHHHH
Q 003399 737 GFPNLKVLHLKSMLWL-EEWTMGNAAMPKLECLIINPCAYLKKMPE-QLWC-IKSLNKFDCWWPQPELR 802 (823)
Q Consensus 737 ~~~~L~~L~L~~~~~l-~~~~~~~~~lp~L~~L~i~~C~~l~~lp~-~l~~-l~~L~~L~l~~c~~~~~ 802 (823)
.+.+.+|+.+ ..+......+++|+.|.+..|...+.--. .... +.++..+++.+|+....
T Consensus 380 ------~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 380 ------ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ------HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 2333333333 22222223333477888888876542111 1111 56677777777774333
No 94
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.46 E-value=0.00012 Score=79.96 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=40.4
Q ss_pred CCeEeccccHHHHHHHHHcC--C---------CCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIEG--P---------PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|+++.++++.+.+... . ...+-|.++|.+|+|||++|+++++ +....|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 57899999999998877431 1 2245689999999999999999998 444443
No 95
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=3.8e-06 Score=92.97 Aligned_cols=120 Identities=20% Similarity=0.204 Sum_probs=60.9
Q ss_pred ceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccCc
Q 003399 522 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSI 600 (823)
Q Consensus 522 LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 600 (823)
|.+-++++|.+..+-.++.-+.+|+.|||++|++.... .+ ..|++|++|||++|.+..+|.- ...+. |+.|++++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~L-r~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NL-RRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HH-Hhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 44445555555544455555555555555555555443 33 5555555555555555555531 22222 555555555
Q ss_pred ccCCCCCCCcCCCcccceeeccC----CCcccccccCCCCccceEEeeccc
Q 003399 601 TLPAHPGKYCGSLENLNFISALH----PCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 601 ~~~~~~~~~i~~L~~L~~l~~~~----~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
.++. ..++.+|++|..+++.. ....+.. +..|..|+.|++.++.
T Consensus 243 ~l~t--L~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 243 ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHh--hhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 5432 33455555555555541 1222333 5555666677776653
No 96
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=4.4e-06 Score=92.43 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=20.6
Q ss_pred CccEEeCCCCcccccchhhcCCCCCceeeccCcccC
Q 003399 568 NLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLP 603 (823)
Q Consensus 568 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 603 (823)
.|.+.+.++|.+..+-.++.-++.|++|||++|.+.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~ 200 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFT 200 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhh
Confidence 355555555555555555555666666666666544
No 97
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00057 Score=63.25 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=49.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHE 260 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 260 (823)
..+.|+|.+|+||||+|+.+.. ........++++. .+........... ....... ............+.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYID--GEDILEEVLDQLL--LIIVGGK----KASGSGELRLRLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEEC--CEEccccCHHHHH--hhhhhcc----CCCCCHHHHHHHHHH
Confidence 5789999999999999999998 3433333455555 4433222222111 1111111 112222333344455
Q ss_pred HhcCC-cEEEEEecCCChh
Q 003399 261 YIMTK-RYLIVIDDVWTIR 278 (823)
Q Consensus 261 ~L~~k-r~LlVlDdvw~~~ 278 (823)
..+.. ..+|++|++....
T Consensus 73 ~~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 73 LARKLKPDVLILDEITSLL 91 (148)
T ss_pred HHHhcCCCEEEEECCcccC
Confidence 55444 4999999998764
No 98
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00025 Score=76.26 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=45.9
Q ss_pred ccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCC-cccccchhhcCCCCCceeeccCc
Q 003399 539 IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSI 600 (823)
Q Consensus 539 i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~ 600 (823)
+..+.++++|++++|.++.+|. + ..+|++|.+++| .+..+|..+ ..+|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4456889999999999999983 3 357999999998 888888755 368999999887
No 99
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.41 E-value=0.00064 Score=73.00 Aligned_cols=119 Identities=14% Similarity=0.139 Sum_probs=71.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.+++|.++..+.+..++..+. -..++-++|..|+||||+|+.+++ ..... ...+. .+. .....+ ++.+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~--~~~~~---~~~i~--~~~-~~~~~i-~~~l~~ 90 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN--EVGAE---VLFVN--GSD-CRIDFV-RNRLTR 90 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCcc---ceEec--cCc-ccHHHH-HHHHHH
Confidence 578999999999999987643 356788899999999999999988 33222 23444 333 222221 111111
Q ss_pred hCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh---hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 237 LMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI---RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
..... .+.+.+-+||+||+... +..+.+...+.....++++|+||....
T Consensus 91 ~~~~~-------------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 91 FASTV-------------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred HHHhh-------------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 11000 01134557889999755 223344433444456778999887543
No 100
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0011 Score=75.37 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=39.0
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+...+.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998654 346788999999999999999876
No 101
>PRK04195 replication factor C large subunit; Provisional
Probab=97.35 E-value=0.00055 Score=77.71 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=71.4
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
.+++|.++.++.+.+|+..- ....+.+-|+|.+|+||||+|++++++ .. |+ .+-+. .|...+.. ....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ieln--asd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELN--ASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEc--ccccccHH-HHHHHH
Confidence 57999999999999998753 222678999999999999999999983 32 32 22233 44332222 223333
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChh------hHHHHHhcCCCCCCCcEEEEeeCc
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIR------MWDVIREILPDNQNGSRVLITLTD 302 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~------~~~~l~~~~~~~~~gs~IivTTR~ 302 (823)
........ ....++-+||+|+++... .+..+...+.. .+..||+|+.+
T Consensus 86 ~~~~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 86 GEAATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred HHhhccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 22221110 011367899999998642 24555544432 23456666643
No 102
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.35 E-value=4.8e-05 Score=87.04 Aligned_cols=239 Identities=20% Similarity=0.139 Sum_probs=135.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCC-C-Ccc----ccccccCccccceeeccCCC-Ccccc-hhh
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSL-V-LIQ----YPSGIENLFLLRYLKLNIPS-LKSLP-SSL 562 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~-~-l~~----lp~~i~~L~~Lr~L~L~~~~-i~~lp-~~i 562 (823)
++.++.|.+..+.... ......+...++.|+.|+++++ . +.. .+.....+.+|+.|+++++. ++..- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKIT--DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCC--hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 6888888887776532 2225678899999999999983 2 221 12234456889999999987 55322 223
Q ss_pred hhcCCCccEEeCCCCc-cccc--chhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccc
Q 003399 563 LSNLLNLYTLDMPFSY-IDHT--ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLR 639 (823)
Q Consensus 563 ~~~L~~L~~L~L~~~~-l~~l--p~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~ 639 (823)
...+++|++|.+.+|. ++.. -.....+++|++|++++|.... ...+.....++++|+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~--------------------d~~l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT--------------------DSGLEALLKNCPNLR 324 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch--------------------HHHHHHHHHhCcchh
Confidence 2348899999998884 5433 3345568999999999875421 111112244577777
Q ss_pred eEEeecccccchhhHHHhhcCCCCCcEEEeecCCC-C-CCCcEEeeCCcCcccCccEeEeecccCCCCC-cccccCCCCC
Q 003399 640 NLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESK-M-PRLSKIALAEYLFPHSLTHLSFSNTVLMDDP-MPTLEKLPLL 716 (823)
Q Consensus 640 ~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~-~-~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L 716 (823)
.|.+..+.. +..++.+.+..... . ..+..+.. ..+++|+.+.+..|...... ...+..+|+|
T Consensus 325 ~l~~~~~~~------------c~~l~~~~l~~~~~~~~d~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 325 ELKLLSLNG------------CPSLTDLSLSGLLTLTSDDLAELIL---RSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhhhhhcCC------------CccHHHHHHHHhhccCchhHhHHHH---hcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 766554431 22233333321100 0 01222222 33666777777776633333 2445566666
Q ss_pred CeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeec--ccccccccEEEeecCCCCC
Q 003399 717 QVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG--NAAMPKLECLIINPCAYLK 777 (823)
Q Consensus 717 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~--~~~lp~L~~L~i~~C~~l~ 777 (823)
. ..+. .....+..|+.|.+..|.....-... ...+.++..+.+.+|+.+.
T Consensus 390 ~-~~l~----------~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 390 T-ESLE----------LRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred c-hHHH----------HHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 2 2222 11122333888888877654322111 1116778888888887665
No 103
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.00082 Score=78.67 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999887653 3455689999999999999999873
No 104
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.32 E-value=0.0011 Score=71.26 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccc-cCcceeEEEeCCCCCCCCHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 235 (823)
.+++|+++.++.+..++..+. ...+.++|..|+||||+|+.+.+ +.. ..+. ..++.-..+....... ..+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~--~l~~~~~~-~~~i~~~~~~~~~~~~-~~~~i~ 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAR--ELYGEDWR-ENFLELNASDERGIDV-IRNKIK 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHcCCccc-cceEEeccccccchHH-HHHHHH
Confidence 568999999999999987654 44579999999999999999987 322 1221 1222200222222111 112222
Q ss_pred HhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCc
Q 003399 236 FLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTD 302 (823)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~ 302 (823)
.+....+ .-...+-++++|++... +....+...+......+++|+++..
T Consensus 91 ~~~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 91 EFARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred HHHhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 2111100 00123568999998754 3455666555544555777777643
No 105
>PRK08727 hypothetical protein; Validated
Probab=97.29 E-value=0.00065 Score=69.12 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=28.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
...+.|+|..|+|||+|++++++ ....+...+.|++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 35699999999999999999988 4444444666777
No 106
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.28 E-value=0.0012 Score=75.62 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=38.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 579999999999999988653 345788999999999999999876
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.0015 Score=74.02 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=38.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999997653 245678999999999999999876
No 108
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.27 E-value=3.2e-05 Score=68.42 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=51.9
Q ss_pred cceEEEccCCCCccccc---cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeec
Q 003399 521 LLRVLDLGSLVLIQYPS---GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNF 597 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~---~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 597 (823)
.+-.|+|+.|.+..+++ .+....+|...+|++|.++..|+.+-.+.+-+.+|++.+|.++.+|..+..++.||.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34556666666553333 334445666667777777777766633445667777777777777766777777777776
Q ss_pred cCcccC
Q 003399 598 GSITLP 603 (823)
Q Consensus 598 ~~~~~~ 603 (823)
+.|.+.
T Consensus 108 ~~N~l~ 113 (177)
T KOG4579|consen 108 RFNPLN 113 (177)
T ss_pred ccCccc
Confidence 666554
No 109
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.27 E-value=0.0062 Score=62.69 Aligned_cols=114 Identities=12% Similarity=0.144 Sum_probs=78.2
Q ss_pred CCeEecc---ccHHHHHHHHHcCC-CCeEEEEEEecCCchHHHHHHHHhCCcccc-----cCcceeEEEeCCCCCCCCHH
Q 003399 157 RDTVGLD---DRMEELLDLLIEGP-PQLSVVVILDSIGLDKTAFAGEAYNSSYVK-----HYFDCHAWISEPYSNEYDAD 227 (823)
Q Consensus 157 ~~~vGr~---~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~wv~~~vs~~~~~~ 227 (823)
+..||-. +..+++.++|.... ....-+.|||-.|+|||++++++.+..-.. ..+ .++.|. .-..++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq--~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQ--MPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEe--cCCCCChH
Confidence 4555533 23444555555432 345669999999999999999998642111 112 566777 88899999
Q ss_pred HHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcC-CcEEEEEecCCCh
Q 003399 228 QIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMT-KRYLIVIDDVWTI 277 (823)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw~~ 277 (823)
++...|+.+++.... ...+.......+...++. +-=+||+|.+.+.
T Consensus 111 ~~Y~~IL~~lgaP~~----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 111 RFYSAILEALGAPYR----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHHHHhCcccC----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 999999999998654 334555666666667765 5558899999763
No 110
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.27 E-value=0.00014 Score=76.65 Aligned_cols=234 Identities=17% Similarity=0.124 Sum_probs=144.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcc-eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD-CHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
..+.+.++|.|||||||++-.+.. +..-|. .+.++. ...--|...+.-.....++.... .-+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vd--l~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~ 80 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVD--LAPITDPALVFPTLAGALGLHVQ-------PGDSAVDT 80 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---Hhhhcccceeeee--ccccCchhHhHHHHHhhcccccc-------cchHHHHH
Confidence 478999999999999999999886 666775 444555 44444444444444444554321 12334556
Q ss_pred HHHHhcCCcEEEEEecCCCh-hhHHHHHhcCCCCCCCcEEEEeeCcchhhhc-----c----ccc-------CC------
Q 003399 258 LHEYIMTKRYLIVIDDVWTI-RMWDVIREILPDNQNGSRVLITLTDIEMVTS-----F----QLE-------DG------ 314 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~-~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~-----~----~f~-------~~------ 314 (823)
+..+..++|.++|+||.... ++-..+...+..+.+.-.|+.|+|....... . .|. ..
T Consensus 81 ~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 81 LVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 77788899999999998664 2334444445555566678999988655541 0 111 00
Q ss_pred C-CCCCChhhhHHhHHHHcCCcceeeee---------eccccc-------cccc------CCcCCHHHHHHhcccCCCCC
Q 003399 315 E-NIRLDLVPTGGPLRATYKGWPFFILY---------HGSISL-------EENI------GEAVEIPLVLRYFKYCSLPF 371 (823)
Q Consensus 315 ~-~~~~~~~~~~~~i~~~c~GlPLai~~---------~~~~~~-------~~~~------~~~~~i~~~l~~~sy~~L~~ 371 (823)
. .....-.....+|.++..|.|+||.- .+.+.. .+.. .......+.+ .+||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl-~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASL-DWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchh-hhhhHhhhh
Confidence 0 11223345678999999999999987 000100 0110 3455667888 999999999
Q ss_pred CchhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeee
Q 003399 372 CLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEAKK 429 (823)
Q Consensus 372 ~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~~~~ 429 (823)
..+--|--++.|...+..+ ...|.+.|-.........-.-+..++++++.....
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~ 293 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALD 293 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhh
Confidence 9999999999998877544 33444444331101122333445566777665544
No 111
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.26 E-value=0.0018 Score=72.83 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=75.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcce-eEEEeCCCCCCCCHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDC-HAWISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~vs~~~~~~~~~~~i~~ 235 (823)
.+++|-+..+..+...+..+. -...+-++|..|+||||+|+.+++.-.-...+.. -.+.. +... ..-..|..
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~--C~~C----~~C~~i~~ 93 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT--CEQC----TNCISFNN 93 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC--CCCC----hHHHHHhc
Confidence 578999999988888776643 3457889999999999999999873111111000 00000 0000 00011110
Q ss_pred HhCCCCCCccc---ccCCHHHHHHHHHHH----hcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEE-eeCcchh
Q 003399 236 FLMPSSRLSEI---EDKNYEMKKIILHEY----IMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLI-TLTDIEM 305 (823)
Q Consensus 236 ~l~~~~~~~~~---~~~~~~~~~~~l~~~----L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~v 305 (823)
.... +..++ .....+++...+... +.+++-++|+|+++.. ..++.+...+....+.+.+|+ ||+...+
T Consensus 94 ~~h~--Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 94 HNHP--DIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred CCCC--cEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 0000 00000 111222322222221 2356778999999875 568888877776555666654 4444444
Q ss_pred hh
Q 003399 306 VT 307 (823)
Q Consensus 306 ~~ 307 (823)
..
T Consensus 172 ~~ 173 (507)
T PRK06645 172 PA 173 (507)
T ss_pred hH
Confidence 43
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.24 E-value=0.00077 Score=74.08 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++.|+++.++++.+.+... -...+-|.++|.+|+|||++|+++++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 56889999999998876431 12356789999999999999999998
No 113
>PRK08118 topology modulation protein; Reviewed
Probab=97.23 E-value=0.00013 Score=70.02 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=28.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccc-cCcceeEEE
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWI 216 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv 216 (823)
+.|.|+|++|+||||||+.+++...+. -+||..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 358999999999999999999854443 456777753
No 114
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00066 Score=62.25 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 003399 183 VVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~ 202 (823)
|.|+|..|+||||+|+.+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 56899999999999999998
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0024 Score=71.27 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=37.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+...+.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 679999988888888877654 235788999999999999998875
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=97.16 E-value=0.0012 Score=67.18 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=28.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
...+.|+|..|+|||.|++++++ +....-..++|++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEee
Confidence 36789999999999999999987 4433334567777
No 117
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0028 Score=72.79 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=37.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579998888888888887654 346778999999999999999854
No 118
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.0021 Score=71.91 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=37.2
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++||.+...+.+...+..+. -...+-++|..|+||||+|+.+.+
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999888888888776554 235688999999999999999976
No 119
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.00068 Score=67.93 Aligned_cols=36 Identities=28% Similarity=0.359 Sum_probs=30.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.-.++|+|..|.|||||+..+.. .....|+.+.+++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 34678999999999999999987 5788898888877
No 120
>PRK10536 hypothetical protein; Provisional
Probab=97.13 E-value=0.0051 Score=62.04 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=41.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEE
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAW 215 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 215 (823)
..+.++......++.+|... .+|.+.|.+|.|||+||.++..+.-..+.|+.++-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 46778899999999988653 49999999999999999998764222344554443
No 121
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=0.0021 Score=68.83 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=76.0
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCccc-ccCcceeEEEeCCCCCCCCHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYV-KHYFDCHAWISEPYSNEYDADQIVDII 233 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~vs~~~~~~~~~~~i 233 (823)
..++||+.++..+.+++... .+...-+.|.|.+|.|||.+...++.+..- ...| .++++. .-.--....++..|
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~-~~v~in--c~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSP-VTVYIN--CTSLTEASAIFKKI 226 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccc-eeEEEe--eccccchHHHHHHH
Confidence 68999999999999998764 345678899999999999999999986322 2223 334444 22223466788888
Q ss_pred HHHhCCCCCCcccccCCHHHHHHHHHHHhcC--CcEEEEEecCCCh
Q 003399 234 IKFLMPSSRLSEIEDKNYEMKKIILHEYIMT--KRYLIVIDDVWTI 277 (823)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdvw~~ 277 (823)
...+..... ...+..+.+..+.+..+. +-+|+|+|.++..
T Consensus 227 ~~~~~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 227 FSSLLQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 887732111 111224455555555554 3689999988653
No 122
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0017 Score=71.55 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+..+..|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887754 234678999999999999999987
No 123
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0023 Score=70.69 Aligned_cols=147 Identities=10% Similarity=0.069 Sum_probs=75.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.+++|.+..++.+..++..+. -...+-++|+.|+||||+|+.+.+.-.-...++...|..+ +...+.....-+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~-~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE-VTEPCGECESCRDFDAG 93 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc-CCCCCCCCHHHHHHhcC
Confidence 579999988888888887653 3455889999999999999998762111111111111110 11111111111111111
Q ss_pred hCCCCCCccc-ccCCHHHHHHHHHHHh-----cCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEee-Ccchhh
Q 003399 237 LMPSSRLSEI-EDKNYEMKKIILHEYI-----MTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITL-TDIEMV 306 (823)
Q Consensus 237 l~~~~~~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v~ 306 (823)
...+....+. .....+++.. +.+.+ .+++-++|+|++... ..++.+...+....+.+.+|++| +...+.
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 0000000000 0111233322 22333 245568899999764 46788887777666677766555 433443
No 124
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.03 E-value=0.0015 Score=67.30 Aligned_cols=98 Identities=18% Similarity=0.261 Sum_probs=60.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
.+..+-.||.+|+||||||+.+.+..+-.. ..||. .|..-.-..-.++|+++-..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfve--lSAt~a~t~dvR~ife~aq~------------------- 215 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVE--LSATNAKTNDVRDIFEQAQN------------------- 215 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEE--EeccccchHHHHHHHHHHHH-------------------
Confidence 477778999999999999999998533333 34566 55443323333334333221
Q ss_pred HHHhcCCcEEEEEecCCChh--hHHHHHhcCCCCCCCcEEEE--eeCcch
Q 003399 259 HEYIMTKRYLIVIDDVWTIR--MWDVIREILPDNQNGSRVLI--TLTDIE 304 (823)
Q Consensus 259 ~~~L~~kr~LlVlDdvw~~~--~~~~l~~~~~~~~~gs~Iiv--TTR~~~ 304 (823)
...+.++|..|.+|.|..-. |-+ ..+|.-.+|+-++| ||-++.
T Consensus 216 ~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 216 EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCc
Confidence 12345789999999996532 222 23555667776665 666653
No 125
>PRK12377 putative replication protein; Provisional
Probab=97.03 E-value=0.0021 Score=65.38 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=29.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
...+.++|..|+|||+||.++.+ .+......+++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEE
Confidence 46789999999999999999999 5555555667777
No 126
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.0017 Score=66.95 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=27.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.-+.++|..|+|||.||.++.+ ........+.|++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 4589999999999999999988 4444444566666
No 127
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0041 Score=70.96 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|-+..++.+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887654 235678999999999999999876
No 128
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.97 E-value=0.0016 Score=78.70 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++||+++++++++.|.... ..-+.++|.+|+|||++|+.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 569999999999999998654 33446999999999999999887
No 129
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.0025 Score=73.32 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=38.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||-+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 679999999999998887654 235578999999999999999987
No 130
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.95 E-value=0.0061 Score=66.66 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887654 345778999999999999988875
No 131
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.95 E-value=0.0002 Score=63.52 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=66.3
Q ss_pred HhcCCCcceEEEccCCCCccccccccCc-cccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCc
Q 003399 515 IYGMFKLLRVLDLGSLVLIQYPSGIENL-FLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLR 593 (823)
Q Consensus 515 ~~~~~~~LrvL~L~~~~l~~lp~~i~~L-~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 593 (823)
.+.....|...+|++|.+.++|+.+... +-+..|+|++|.|..+|.++ ..++.|+.|+++.|.+...|..|..|.+|-
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 4456667777788888888887776654 47788888888888888886 888888888888888888887777788888
Q ss_pred eeeccCccc
Q 003399 594 HLNFGSITL 602 (823)
Q Consensus 594 ~L~l~~~~~ 602 (823)
.|+..+|..
T Consensus 127 ~Lds~~na~ 135 (177)
T KOG4579|consen 127 MLDSPENAR 135 (177)
T ss_pred HhcCCCCcc
Confidence 887666544
No 132
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.0046 Score=67.59 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=38.0
Q ss_pred CCeEeccccHHHHHHHHHcCCC--------CeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPP--------QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++++|-+..++.+.+++..+.. -...+-++|+.|+||||+|+.+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999999876531 356688999999999999999865
No 133
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.90 E-value=0.0051 Score=69.89 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=38.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887653 246788999999999999999876
No 134
>PRK07261 topology modulation protein; Provisional
Probab=96.90 E-value=0.0017 Score=62.59 Aligned_cols=67 Identities=10% Similarity=0.178 Sum_probs=42.1
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccc-cCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHH
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHE 260 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 260 (823)
.|.|+|++|+||||||+++.....+. -+.|...|-. . ....+.++....+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~--~-------------------------~~~~~~~~~~~~~~~ 54 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP--N-------------------------WQERDDDDMIADISN 54 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc--c-------------------------cccCCHHHHHHHHHH
Confidence 48999999999999999997632111 1334444432 1 112234556666677
Q ss_pred HhcCCcEEEEEecCCCh
Q 003399 261 YIMTKRYLIVIDDVWTI 277 (823)
Q Consensus 261 ~L~~kr~LlVlDdvw~~ 277 (823)
.+.+.+ .|+|+....
T Consensus 55 ~~~~~~--wIidg~~~~ 69 (171)
T PRK07261 55 FLLKHD--WIIDGNYSW 69 (171)
T ss_pred HHhCCC--EEEcCcchh
Confidence 776666 678887554
No 135
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.90 E-value=0.0028 Score=64.59 Aligned_cols=36 Identities=6% Similarity=0.081 Sum_probs=27.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
...+.|+|..|+|||+|++.+++ .....-..+.+++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~ 80 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVP 80 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEE
Confidence 46789999999999999999998 4443334566777
No 136
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.88 E-value=0.011 Score=58.04 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=28.2
Q ss_pred CCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcc
Q 003399 264 TKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDI 303 (823)
Q Consensus 264 ~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 303 (823)
+.+-++|+||+... +.++.+...+....+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 45668999999764 45777777776655667777777653
No 137
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0078 Score=68.92 Aligned_cols=45 Identities=22% Similarity=0.141 Sum_probs=38.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+...+.|.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999987653 345678999999999999999886
No 138
>PHA00729 NTP-binding motif containing protein
Probab=96.83 E-value=0.0032 Score=62.45 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 168 ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++.+...+ ...|.|.|.+|+||||||..+.+
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHH
Confidence 3444454443 56789999999999999999987
No 139
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.82 E-value=0.00093 Score=65.51 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=36.4
Q ss_pred CCeEeccccHHHHHHHHHc---CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE---GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
++|||.+.-++.+.-++.. ....+.-+-.||++|+||||||.-+.+ +....|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 6899999888887655542 234577889999999999999999999 666655
No 140
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.81 E-value=0.0026 Score=76.06 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.++||+++++.+++.|.... ..-+.++|.+|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 479999999999999887654 33456899999999999999987
No 141
>PRK09087 hypothetical protein; Validated
Probab=96.81 E-value=0.0058 Score=61.68 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-+.+.|+|..|+|||+|++.+++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 466899999999999999999873
No 142
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.80 E-value=0.0024 Score=66.39 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCeEeccccHHHHHHHHHc----------C---CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----------G---PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----------~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.|.+.... + .+...-+.++|.+|+||||+|+.+++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 3588988877776544221 1 22456678999999999999999986
No 143
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.77 E-value=0.0036 Score=75.73 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=37.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998754 33455899999999999999887
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.76 E-value=0.0033 Score=68.88 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=37.2
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|.+..+++|.+.+... -...+-|.++|.+|.|||++|+++++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56889999998888876421 12457788999999999999999998
No 145
>PRK09183 transposase/IS protein; Provisional
Probab=96.76 E-value=0.0038 Score=64.43 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+.|+|..|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999976
No 146
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.0069 Score=72.22 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=38.2
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+..++.|..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999988654 235678999999999999999876
No 147
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0083 Score=65.82 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+...+.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999997653 346888999999999999999876
No 148
>PRK06526 transposase; Provisional
Probab=96.73 E-value=0.0026 Score=65.26 Aligned_cols=23 Identities=30% Similarity=0.104 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..-+.++|.+|+|||+||.++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH
Confidence 34589999999999999999987
No 149
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.73 E-value=0.0047 Score=62.63 Aligned_cols=101 Identities=17% Similarity=0.059 Sum_probs=57.6
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH-hCC-CCCCccc
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF-LMP-SSRLSEI 246 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~-l~~-~~~~~~~ 246 (823)
+-++|..+=..-.++.|+|.+|+||||+|.++.. .....-..++|++ .. .++..++. +++.. +.. .....-.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~--~e-~~~~~r~~-~~~~~~~~~~~~~~~~~ 85 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYID--TE-GLSPERFK-QIAGEDFEELLSNIIIF 85 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEE--CC-CCCHHHHH-HHHhhChHhHhhCeEEE
Confidence 3334444434568999999999999999999886 3434456889999 65 56655543 23222 000 0000001
Q ss_pred ccCCHHH---HHHHHHHHhcCCcEEEEEecCC
Q 003399 247 EDKNYEM---KKIILHEYIMTKRYLIVIDDVW 275 (823)
Q Consensus 247 ~~~~~~~---~~~~l~~~L~~kr~LlVlDdvw 275 (823)
...+..+ ....+.+.++.+--++|+|.+.
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 86 EPSSFEEQSEAIRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred eCCCHHHHHHHHHHHHHHHHhcccEEEEeCcH
Confidence 1222222 3334444444566789999874
No 150
>CHL00181 cbbX CbbX; Provisional
Probab=96.73 E-value=0.0085 Score=62.80 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCeEeccccHHHHHHHHH---c-------C---CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLI---E-------G---PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~-------~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..+++|.++.. - + ......+.++|.+|+||||+|+.+++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 367887777776554431 1 1 11233478899999999999999976
No 151
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.73 E-value=0.0051 Score=61.82 Aligned_cols=120 Identities=14% Similarity=0.202 Sum_probs=67.8
Q ss_pred eEec-cccHHHHHHHHHcC-CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcc--eeEEEeCCCCCCCCHHHHHHHHH
Q 003399 159 TVGL-DDRMEELLDLLIEG-PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 159 ~vGr-~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
++|- ++..-.....+... +.....+-|+|..|+|||.|.+++++ ++.+... .+++++ ..+....+.
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~--------~~~f~~~~~ 80 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS--------AEEFIREFA 80 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE--------HHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec--------HHHHHHHHH
Confidence 3564 33333444444443 33355688999999999999999999 5544322 456666 455566666
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh---hhHHH-HHhcCCC-CCCCcEEEEeeCc
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI---RMWDV-IREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~---~~~~~-l~~~~~~-~~~gs~IivTTR~ 302 (823)
..+.... ...+++.+++ -=+|++||+... ..|++ +...+.. ...|-+||+|++.
T Consensus 81 ~~~~~~~-------------~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 81 DALRDGE-------------IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHHHTTS-------------HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHccc-------------chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 5554311 1234445553 347888999764 23322 2222221 1346689999854
No 152
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.73 E-value=0.0086 Score=66.91 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=57.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCc-c-eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYF-D-CHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
..-+.|+|..|+|||+||+++++ ++.... . .++|++ ..++..++...+... ..+ .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~--------~~~f~~~~~~~~~~~---------~~~----~ 186 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT--------SEKFLNDLVDSMKEG---------KLN----E 186 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHHHHHHhcc---------cHH----H
Confidence 45699999999999999999999 554433 2 456666 234556665555321 111 2
Q ss_pred HHHHhcCCcEEEEEecCCCh---hhH-HHHHhcCCC-CCCCcEEEEeeC
Q 003399 258 LHEYIMTKRYLIVIDDVWTI---RMW-DVIREILPD-NQNGSRVLITLT 301 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~---~~~-~~l~~~~~~-~~~gs~IivTTR 301 (823)
..+.+..+.-+|++||+... ..+ +.+...+.. ...|..||+||.
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 23333344568999999743 112 223222221 122456888874
No 153
>PRK06921 hypothetical protein; Provisional
Probab=96.71 E-value=0.0058 Score=63.28 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=66.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccC-cceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
...+.++|..|+|||+||.++.+ .+... -..+++++ . .+++..+.... +.... .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~--~------~~l~~~l~~~~--------------~~~~~-~ 171 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFP--F------VEGFGDLKDDF--------------DLLEA-K 171 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEE--H------HHHHHHHHHHH--------------HHHHH-H
Confidence 56789999999999999999998 55444 34567777 3 22222222211 11111 1
Q ss_pred HHHhcCCcEEEEEecCCC-------hhhHH--HHHhcCCC-CCCCcEEEEeeCcchhhhcccccCCCCCCCChhhhHHhH
Q 003399 259 HEYIMTKRYLIVIDDVWT-------IRMWD--VIREILPD-NQNGSRVLITLTDIEMVTSFQLEDGENIRLDLVPTGGPL 328 (823)
Q Consensus 259 ~~~L~~kr~LlVlDdvw~-------~~~~~--~l~~~~~~-~~~gs~IivTTR~~~v~~~~~f~~~~~~~~~~~~~~~~i 328 (823)
.+.+. +-=||||||+.. ..+|. .+...+.. -..+..+||||...-- .....-+.++.+|
T Consensus 172 ~~~~~-~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~----------el~~~~~~l~sRi 240 (266)
T PRK06921 172 LNRMK-KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTID----------ELLDIDEALGSRI 240 (266)
T ss_pred HHHhc-CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH----------HHhhhhhHHHHHH
Confidence 22232 456999999922 12443 23332221 1123457888754210 0111125778888
Q ss_pred HHHcCCcce
Q 003399 329 RATYKGWPF 337 (823)
Q Consensus 329 ~~~c~GlPL 337 (823)
++.|.+..+
T Consensus 241 ~~r~~~~~i 249 (266)
T PRK06921 241 VEMCKDYLV 249 (266)
T ss_pred HHhccCeEE
Confidence 888877544
No 154
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.68 E-value=0.011 Score=59.91 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=61.5
Q ss_pred HHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc------ceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC--
Q 003399 171 DLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF------DCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-- 242 (823)
Q Consensus 171 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-- 242 (823)
++|..+=..-.++.|+|.+|+|||+||.++.. .....- ..++|++ ....++..++. ++.+.......
T Consensus 10 ~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~--~~~~~~~~~g~~~~v~yi~--~e~~~~~~rl~-~~~~~~~~~~~~~ 84 (226)
T cd01393 10 ELLGGGIPTGRITEIFGEFGSGKTQLCLQLAV--EAQLPGELGGLEGKVVYID--TEGAFRPERLV-QLAVRFGLDPEEV 84 (226)
T ss_pred HHhCCCCcCCcEEEEeCCCCCChhHHHHHHHH--HhhcccccCCCcceEEEEe--cCCCCCHHHHH-HHHHHhccchhhh
Confidence 34444434568999999999999999999875 222223 5678999 77777765554 33333322110
Q ss_pred ---CcccccCCHHHHHHHHHHHhc---C-CcEEEEEecCCC
Q 003399 243 ---LSEIEDKNYEMKKIILHEYIM---T-KRYLIVIDDVWT 276 (823)
Q Consensus 243 ---~~~~~~~~~~~~~~~l~~~L~---~-kr~LlVlDdvw~ 276 (823)
..-....+.+++...+.+... . +--|+|+|.+..
T Consensus 85 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 85 LDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred hccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 000223455666666666553 3 455899999853
No 155
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.63 E-value=0.0087 Score=69.05 Aligned_cols=45 Identities=13% Similarity=-0.010 Sum_probs=37.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 579999999999888887643 345588999999999999988876
No 156
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.63 E-value=0.0056 Score=73.21 Aligned_cols=115 Identities=10% Similarity=0.194 Sum_probs=66.3
Q ss_pred CCeEeccccHHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQI 229 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 229 (823)
..++|.++.++.+.+.+... +....++.++|+.|+|||+||+.++. .. +...+.++ .++-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d--~se~~~~~-- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFD--MSEYMEKH-- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEe--Cchhhhcc--
Confidence 46899999999998888742 11245688999999999999999987 33 23345555 44422211
Q ss_pred HHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcC-CcEEEEEecCCCh--hhHHHHHhcCC
Q 003399 230 VDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMT-KRYLIVIDDVWTI--RMWDVIREILP 288 (823)
Q Consensus 230 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw~~--~~~~~l~~~~~ 288 (823)
.+...++.... ....+. ...+.+.++. ..-+++||+++.. +.++.+...+.
T Consensus 525 --~~~~lig~~~g---yvg~~~---~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 525 --TVSRLIGAPPG---YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred --cHHHHhcCCCC---Ccccch---hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11111221111 011111 1223344443 4459999999865 45555655554
No 157
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.62 E-value=0.005 Score=63.04 Aligned_cols=101 Identities=11% Similarity=0.154 Sum_probs=60.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcc-eeEEEeCCCCCCCC-HHHHHHHHHHHhCCCC--------CCcccccC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD-CHAWISEPYSNEYD-ADQIVDIIIKFLMPSS--------RLSEIEDK 249 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~~--------~~~~~~~~ 249 (823)
=.-++|+|-.|+||||||+.+++ .++.+|+ .++++- +.+... +.++.+++.+.=.... +.+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~--iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAG--VGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEE--eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 35789999999999999999998 6665664 555666 766653 4556555544311111 10000011
Q ss_pred CHHHHHHHHHHHh---cCCcEEEEEecCCCh-hhHHHHH
Q 003399 250 NYEMKKIILHEYI---MTKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 250 ~~~~~~~~l~~~L---~~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
......-.+-+++ +++.+|+|+||+-.. ....++.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 1112233455555 389999999999654 3334443
No 158
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.012 Score=67.95 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=38.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999887653 345688999999999999999987
No 159
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0048 Score=58.80 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=28.9
Q ss_pred ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhc-CCCCCceeeccCccc
Q 003399 544 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFW-KMNKLRHLNFGSITL 602 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~~ 602 (823)
+.-.++|++|.+..++. |..+.+|++|.|.+|.|+.+-+.+. .+++|..|.|.+|++
T Consensus 43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 34445555555554443 2455555666665555555533333 244555555555543
No 160
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.60 E-value=0.0096 Score=62.44 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=30.3
Q ss_pred CeEeccccHHHHHHHHHc----------C-C--CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 158 DTVGLDDRMEELLDLLIE----------G-P--PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~----------~-~--~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.++.+++|.++... + . ....-+.++|.+|.||||+|+.+++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 578877777766554221 1 0 1123578999999999999987765
No 161
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.59 E-value=0.0045 Score=62.88 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=30.2
Q ss_pred CeE-eccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 158 DTV-GLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 158 ~~v-Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+|+ |.+.........+..+......+.|+|..|+|||+||+++++.
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 444 5544443333333222234567889999999999999999983
No 162
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.58 E-value=0.0095 Score=59.38 Aligned_cols=117 Identities=14% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCeEeccccHHHHHHHHH---cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLI---EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDII 233 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 233 (823)
+.++|.+..++.|++--. .+. ...-+-+||..|.|||++++++.+ +....==..+-|. +.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~--~y~~~GLRlIev~----k~---------- 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLN--EYADQGLRLIEVS----KE---------- 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHH--HHhhcCceEEEEC----HH----------
Confidence 679999999988876432 232 355677899999999999999988 3332211222222 11
Q ss_pred HHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh---hhHHHHHhcCCC---CCCCcEEE-EeeCcchh
Q 003399 234 IKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI---RMWDVIREILPD---NQNGSRVL-ITLTDIEM 305 (823)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~---~~~~~l~~~~~~---~~~gs~Ii-vTTR~~~v 305 (823)
+-.+...+...+++ +..||+|++||+.-. .....++..+.. ..|..-+| .||..+++
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 11222333333331 347999999999533 356666665553 22334444 44444444
No 163
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.58 E-value=0.0059 Score=65.10 Aligned_cols=108 Identities=10% Similarity=-0.003 Sum_probs=64.5
Q ss_pred cHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc-ce-eEEEeCCCCCCC-CHHHHHHHHHHHhCCCC
Q 003399 165 RMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF-DC-HAWISEPYSNEY-DADQIVDIIIKFLMPSS 241 (823)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~ 241 (823)
-..++++.+..-.. -..+.|+|..|+|||||++.+.+ .+.... +. ++|+. +.+.. ++.++.+.+...+....
T Consensus 119 ~~~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~l--IgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLL--IDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEE--ecCCCCCHHHHHHHHhhhEEeec
Confidence 34457777664322 24569999999999999999887 443322 33 46766 66554 67788888877665532
Q ss_pred C-CcccccCCHHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 242 R-LSEIEDKNYEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 242 ~-~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
. .+.............+-+++ ++++++||+|++-..
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 00011111111222222333 479999999999543
No 164
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.58 E-value=0.0062 Score=64.86 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=28.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.-+.++|..|+|||+||.++.+ ++...-..+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEE
Confidence 6799999999999999999998 4444334667777
No 165
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.57 E-value=0.0096 Score=66.81 Aligned_cols=47 Identities=28% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.++.|.+..++++.+.+... -...+-|.++|.+|.|||++|+++++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 56888999999998876421 123556889999999999999999983
No 166
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.012 Score=68.39 Aligned_cols=136 Identities=13% Similarity=0.164 Sum_probs=73.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.++||.+..++.+..++..+. -...+-++|..|+||||+|+.+.+. +.-.. +-. ....++....-+.|...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~--~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDP--KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCC--CCCCCccCHHHHHHhcC
Confidence 579999999999988887653 3456789999999999999999862 21000 000 01111222222233221
Q ss_pred hCCCC-CCcccccCCHHHHHHHHHHHh-----cCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCc
Q 003399 237 LMPSS-RLSEIEDKNYEMKKIILHEYI-----MTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTD 302 (823)
Q Consensus 237 l~~~~-~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~ 302 (823)
..... ..........++.. .+.+.+ .+++-++|+|++... +..+.|...+......+.+|++|.+
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11100 00000011222222 122222 245668999999654 4577777666555556677666644
No 167
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.54 E-value=0.0028 Score=63.78 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=80.2
Q ss_pred chHHHHHHHHHHhhcccccccchhchhhHHHHHHHHHHHHHHHHhchhhhhhhhhhhccCccCCChhHHHHHHHHHHHhh
Q 003399 3 INFRLFFERLGRVLAGEEVTLPDAAKQPIQNLHAESEIVTSWLREFEDDISCLLMQKIGEVEIDDPDLGNIMDEINFFTY 82 (823)
Q Consensus 3 ~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~ 82 (823)
|.|..++++|-++.. .....+.-++.+++-++.+++.+|.||+++..+ .. ......+.+..++...||
T Consensus 296 GyVdFlL~NLkdfq~-rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee-----~~------nkh~~~ed~a~~ii~kAy 363 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQG-RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEE-----PH------NKHDTNEDCATQIIRKAY 363 (402)
T ss_pred cHHHHHHhhHHHHhc-cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhc-----cc------hhhhhhhhHHHHHHHHHh
Confidence 567888899988887 788888999999999999999999999998441 33 222348899999999999
Q ss_pred hhHHHHhHhHhhhhcccCCCCcHHHHHHHhhhHHHHHH
Q 003399 83 ESEKVIDTFINSISEQKSQSSCSEDIFDALQGPQSRIT 120 (823)
Q Consensus 83 d~ed~ld~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 120 (823)
++|.++|-+............|...+..+|+-++++++
T Consensus 364 evEYVVDaCi~k~~P~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 364 EVEYVVDACISKSVPHWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred heeeeeehhhcCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999854332211112344677777777777664
No 168
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.0066 Score=62.32 Aligned_cols=75 Identities=20% Similarity=0.113 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
...-+.++|.+|+|||.||.++.+ ++...=-.+.+++ ..++..++....... .....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~--------~~el~~~Lk~~~~~~------------~~~~~l 161 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFIT--------APDLLSKLKAAFDEG------------RLEEKL 161 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEE--------HHHHHHHHHHHHhcC------------chHHHH
Confidence 466789999999999999999999 5554334666777 445555554444321 111222
Q ss_pred HHHhcCCcEEEEEecCCC
Q 003399 259 HEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 259 ~~~L~~kr~LlVlDdvw~ 276 (823)
.+.++ +-=||||||+-.
T Consensus 162 ~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 162 LRELK-KVDLLIIDDIGY 178 (254)
T ss_pred HHHhh-cCCEEEEecccC
Confidence 22222 234889999955
No 169
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.54 E-value=0.0057 Score=74.31 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=37.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++||+.++.++++.|.... ..-+.++|.+|+|||++|+.+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 569999999999999997754 33445799999999999999887
No 170
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.016 Score=66.28 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=37.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.+++|-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 578998888888888887542 2467788999999999999999873
No 171
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.51 E-value=0.011 Score=66.62 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=55.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcc--eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
..-+.|+|..|+|||+||+++.+ ++...+. .+++++ ..++...+...+... .. ..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~--------~~~~~~~~~~~~~~~---------~~----~~ 204 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVT--------SEKFTNDFVNALRNN---------TM----EE 204 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHHHHHHHcC---------cH----HH
Confidence 46689999999999999999999 5555542 355666 233444444444221 11 22
Q ss_pred HHHHhcCCcEEEEEecCCCh---hhH-HHHHhcCCC-CCCCcEEEEeeCc
Q 003399 258 LHEYIMTKRYLIVIDDVWTI---RMW-DVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~---~~~-~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
+.+.++ +.-+||+||+... +.+ +.+...+.. ...|..||+||..
T Consensus 205 ~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 205 FKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred HHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 333444 3448899999643 111 233322221 1124568887754
No 172
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.51 E-value=0.0074 Score=61.66 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=57.8
Q ss_pred HHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc----CcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-Ccc--
Q 003399 173 LIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-LSE-- 245 (823)
Q Consensus 173 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~-- 245 (823)
|..+=..-.++.|+|.+|+||||||.++.-...... .-..++|++ ....++..++.. +++..+.... ..+
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~--~e~~~~~~rl~~-~~~~~~~~~~~~~~~i 88 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID--TEGTFRPERLVQ-IAERFGLDPEEVLDNI 88 (235)
T ss_pred ccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe--CCCCcCHHHHHH-HHHHhccChHhHhcCE
Confidence 333434568999999999999999999864212222 136899999 777777655433 3344332110 000
Q ss_pred --cccCCHHH---HHHHHHHHhc-C-CcEEEEEecCCC
Q 003399 246 --IEDKNYEM---KKIILHEYIM-T-KRYLIVIDDVWT 276 (823)
Q Consensus 246 --~~~~~~~~---~~~~l~~~L~-~-kr~LlVlDdvw~ 276 (823)
....+.++ ....+.+.+. . +--+||+|-+..
T Consensus 89 ~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 89 YVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred EEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 11122222 3344444443 3 566889998853
No 173
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.50 E-value=0.0019 Score=62.52 Aligned_cols=36 Identities=17% Similarity=0.032 Sum_probs=25.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
-.-+.++|..|+|||.||.++.+ +...+=..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee
Confidence 45689999999999999999988 4433333567777
No 174
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.021 Score=66.37 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+...+.+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999987654 345688999999999999988766
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.45 E-value=0.0054 Score=72.51 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.++||+++++++++.|.... ..-+-++|.+|+|||++|+.+++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 579999999999999988753 23345799999999999999986
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.045 Score=63.80 Aligned_cols=115 Identities=19% Similarity=0.293 Sum_probs=68.9
Q ss_pred CCeEeccccHHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc---ceeEEEeCCCCCCCCH
Q 003399 157 RDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWISEPYSNEYDA 226 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs~~~~~ 226 (823)
..++|.++.++.+.+.+... .....+.-.+|+.|||||.||+++.. . -| +..+-++ .|+-- .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~---Lfg~e~aliR~D--MSEy~-E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--A---LFGDEQALIRID--MSEYM-E 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--H---hcCCCccceeec--hHHHH-H
Confidence 57999999999999988653 23467788899999999999988875 1 22 2222223 33211 1
Q ss_pred HHHHHHHHHHhCC-CCCCcccccCCHHHHHHHHHHHhcCCcE-EEEEecCCCh--hhHHHHHhcCCC
Q 003399 227 DQIVDIIIKFLMP-SSRLSEIEDKNYEMKKIILHEYIMTKRY-LIVIDDVWTI--RMWDVIREILPD 289 (823)
Q Consensus 227 ~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdvw~~--~~~~~l~~~~~~ 289 (823)
+.=++.|-+ +.. .-.- ++ .-.|-+..++++| .|.||.|... +..+-+...+.+
T Consensus 563 ----kHsVSrLIGaPPG---YVGy--ee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 ----KHSVSRLIGAPPG---YVGY--EE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred ----HHHHHHHhCCCCC---Ccee--cc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 111222222 211 0011 11 2345666778877 8889999875 455666666654
No 177
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.026 Score=63.80 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=37.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|-+...+.+...+..+. -..++-++|..|+||||+|+.+.+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 579999999999999887654 345678999999999999997765
No 178
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.019 Score=64.27 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999887654 236678899999999999998866
No 179
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.39 E-value=0.0063 Score=67.21 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|.+..++++.+.+... -...+-|.++|.+|.|||++|+++++ +....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 45788999999888877421 12345678999999999999999999 555444
No 180
>PRK06620 hypothetical protein; Validated
Probab=96.39 E-value=0.011 Score=59.24 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+.+-|+|..|+|||+|++.+.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999998874
No 181
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.38 E-value=0.2 Score=60.85 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=66.2
Q ss_pred CCeEeccccHHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQI 229 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 229 (823)
..++|.++.++.+.+.+... +....++-++|+.|+|||+||+.+.+ .+-..-...+-++ .++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d--~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLD--MSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEE--chhccccccH
Confidence 57999999999998888632 12245677899999999999999876 2211112333444 4432221111
Q ss_pred HHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCc-EEEEEecCCCh--hhHHHHHhcCCC
Q 003399 230 VDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKR-YLIVIDDVWTI--RMWDVIREILPD 289 (823)
Q Consensus 230 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdvw~~--~~~~~l~~~~~~ 289 (823)
.+ -++.... ....+. ...+.+.++.++ -+++||++... +.++.+...+..
T Consensus 585 ~~----l~g~~~g---yvg~~~---~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 585 SK----LIGSPPG---YVGYNE---GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred HH----hcCCCCc---ccCcCc---cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 11 1111110 001111 113344555554 58899999865 456666665543
No 182
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.37 E-value=0.015 Score=58.15 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=55.8
Q ss_pred HHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHh-CCC-CCCcccccCC
Q 003399 173 LIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFL-MPS-SRLSEIEDKN 250 (823)
Q Consensus 173 L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l-~~~-~~~~~~~~~~ 250 (823)
|..+=+.-+++-|+|.+|+|||++|.++.. .....-..++|++ ... ++..++.+. ++.. ... ....-....+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~--~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYID--TEG-LSPERFKQI-AEDRPERALSNFIVFEVFD 78 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEE--CCC-CCHHHHHHH-HHhChHHHhcCEEEEECCC
Confidence 333334568999999999999999999876 3444457899999 655 666555443 2221 000 0000011122
Q ss_pred HH---HHHHHHHHHhcC-CcEEEEEecCC
Q 003399 251 YE---MKKIILHEYIMT-KRYLIVIDDVW 275 (823)
Q Consensus 251 ~~---~~~~~l~~~L~~-kr~LlVlDdvw 275 (823)
.. .....+.+.+.. +.-+||+|-+.
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcH
Confidence 22 234444444543 45588888874
No 183
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.37 E-value=0.017 Score=70.01 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=37.6
Q ss_pred CCeEeccccHHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.+...+... +....++.++|..|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998888642 11235788999999999999999986
No 184
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.36 E-value=0.0046 Score=58.90 Aligned_cols=107 Identities=24% Similarity=0.195 Sum_probs=76.0
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc--hhhcCCCCCceeecc
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA--DEFWKMNKLRHLNFG 598 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~ 598 (823)
..-.+||++|.+..++. +..+..|..|.|++|.|..+.+.+...+++|++|.|.+|+|.++- ..+..+++|+.|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34578888888776654 667888999999999999888887556778999999999887763 346778888888776
Q ss_pred CcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccc
Q 003399 599 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 599 ~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
+|.+... ..+ . .-++..+++|+.|+.....
T Consensus 122 ~Npv~~k-----------~~Y-------R-~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHK-----------KNY-------R-LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcc-----------cCc-------e-eEEEEecCcceEeehhhhh
Confidence 6644321 000 0 0126677888888776654
No 185
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.36 E-value=0.0026 Score=57.33 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 186
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.36 E-value=0.007 Score=73.06 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.++||+.++.++++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 579999999999999887754 33456999999999999999987
No 187
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.36 E-value=0.013 Score=59.44 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=47.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
...+.++|.+|+|||+||.++.+ .....-..+++++ +.++...+-...... ..+.+ .+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it--------~~~l~~~l~~~~~~~-------~~~~~----~~l 157 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT--------VADIMSAMKDTFSNS-------ETSEE----QLL 157 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--------HHHHHHHHHHHHhhc-------cccHH----HHH
Confidence 45788999999999999999998 4444334566666 344444443333210 11112 233
Q ss_pred HHhcCCcEEEEEecCCCh--hhHH
Q 003399 260 EYIMTKRYLIVIDDVWTI--RMWD 281 (823)
Q Consensus 260 ~~L~~kr~LlVlDdvw~~--~~~~ 281 (823)
+.+. +.=+||+||+-.. .+|+
T Consensus 158 ~~l~-~~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 158 NDLS-NVDLLVIDEIGVQTESRYE 180 (244)
T ss_pred HHhc-cCCEEEEeCCCCCCCCHHH
Confidence 3344 3448888999553 3454
No 188
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.023 Score=65.77 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=38.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+...+.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999887653 345678899999999999999876
No 189
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.34 E-value=0.012 Score=56.01 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=29.4
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY 224 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~ 224 (823)
++.|+|.+|+||||+++.+.. .....-..++|++ .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~--~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVD--IEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEE--CCcch
Confidence 468999999999999999987 3443445677887 55544
No 190
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.33 E-value=0.01 Score=66.32 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=58.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCc--ceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
..-+.|+|..|+|||+|++++.+ .+.... ..+++++ ..++...+...+.... .....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~--------~~~f~~~~~~~l~~~~-----------~~~~~ 199 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS--------GDEFARKAVDILQKTH-----------KEIEQ 199 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE--------HHHHHHHHHHHHHHhh-----------hHHHH
Confidence 45688999999999999999998 443322 2445665 3456666666654310 11223
Q ss_pred HHHHhcCCcEEEEEecCCCh---hhH-HHHHhcCCC-CCCCcEEEEeeCc
Q 003399 258 LHEYIMTKRYLIVIDDVWTI---RMW-DVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~---~~~-~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
+.+.++ +.-+||+||+... +.+ +.+...+.. ...|..||+|+..
T Consensus 200 ~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 200 FKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred HHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 334444 3447889999643 222 334333331 1234578888643
No 191
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.033 Score=60.44 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=37.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|-+...+.+.+.+..+. -...+-++|+.|+||||+|..+.+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999888753 345688999999999999987765
No 192
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.32 E-value=0.0026 Score=67.52 Aligned_cols=46 Identities=13% Similarity=0.338 Sum_probs=40.3
Q ss_pred CeEeccccHHHHHHHHHcC----CCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 158 DTVGLDDRMEELLDLLIEG----PPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+++|.++.++++++++... +...++++++|.+|.||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999998753 234689999999999999999999873
No 193
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.31 E-value=0.013 Score=61.89 Aligned_cols=118 Identities=11% Similarity=0.154 Sum_probs=66.1
Q ss_pred eccccHHHHHHHHHcCC--CCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhC
Q 003399 161 GLDDRMEELLDLLIEGP--PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLM 238 (823)
Q Consensus 161 Gr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 238 (823)
++....+...+++..-. ...+-+.++|..|+|||.||.++++ +....=..+.+++ + ..+..++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~--~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLH--F------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEE--H------HHHHHHHHHHHh
Confidence 34444445555555321 1346788999999999999999999 4444334566777 3 345555544432
Q ss_pred CCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHH--HHHhcC-CCC-CCCcEEEEeeCc
Q 003399 239 PSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWD--VIREIL-PDN-QNGSRVLITLTD 302 (823)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~--~l~~~~-~~~-~~gs~IivTTR~ 302 (823)
.. +.. ..+ +.++ +-=||||||+-.. ..|. ++...+ ... ..+-.+|+||--
T Consensus 205 ~~---------~~~---~~l-~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG---------SVK---EKI-DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC---------cHH---HHH-HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 111 122 2222 4568999999543 4564 243332 221 234557777753
No 194
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.29 E-value=0.0087 Score=66.70 Aligned_cols=99 Identities=9% Similarity=0.146 Sum_probs=55.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
..-+.|+|..|+|||+|++++.+ .+......+++++ ...+...+...+... . ....+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~--------~~~f~~~~~~~l~~~---------~----~~~f~ 197 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR--------SELFTEHLVSAIRSG---------E----MQRFR 197 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee--------HHHHHHHHHHHHhcc---------h----HHHHH
Confidence 45688999999999999999998 4443333455665 234444555544321 0 12233
Q ss_pred HHhcCCcEEEEEecCCChhh----HHHHHhcCCC-CCCCcEEEEeeCc
Q 003399 260 EYIMTKRYLIVIDDVWTIRM----WDVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 260 ~~L~~kr~LlVlDdvw~~~~----~~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
+.++ +.-+|++||+..... -+.+...+.. ...|..||+||..
T Consensus 198 ~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 198 QFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred HHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 3333 344788899865321 1223222221 1135578888743
No 195
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.46 Score=52.79 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=26.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccc--cCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVK--HYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~ 217 (823)
-+++.++|.+|+||||++..+.. ... ..-..+..|+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~--~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA--RYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEE
Confidence 35999999999999999888765 332 2234566666
No 196
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.27 E-value=0.015 Score=56.33 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=30.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
...+|.+.|+.|+||||+|+.+++ +....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 356999999999999999999998 6666666666665
No 197
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.029 Score=63.28 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|-+...+.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999997653 345667899999999999999876
No 198
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0016 Score=64.69 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=52.9
Q ss_pred HhcCCCcceEEEccCCCCccccccccCccccceeeccCC--CCc-ccchhhhhcCCCccEEeCCCCccccc--chhhcCC
Q 003399 515 IYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP--SLK-SLPSSLLSNLLNLYTLDMPFSYIDHT--ADEFWKM 589 (823)
Q Consensus 515 ~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~--~i~-~lp~~i~~~L~~L~~L~L~~~~l~~l--p~~i~~L 589 (823)
....+..|..|++.++.++.+.. +..|++|++|.++.| .+. .++... .++++|++|++++|++..+ ...+.++
T Consensus 38 l~d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhh
Confidence 33444555555555555443321 345677888888877 333 555555 6668888888888855532 1235667
Q ss_pred CCCceeeccCcccCC
Q 003399 590 NKLRHLNFGSITLPA 604 (823)
Q Consensus 590 ~~L~~L~l~~~~~~~ 604 (823)
.+|..|++.+|..+.
T Consensus 116 ~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN 130 (260)
T ss_pred cchhhhhcccCCccc
Confidence 777777777775543
No 199
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.22 E-value=0.014 Score=64.95 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=55.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcc--eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
...+.|+|..|+|||+||+++++ ++..... .+++++ ..++...+...+... ..+ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~--------~~~~~~~~~~~~~~~---------~~~----~ 192 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS--------SEKFTNDFVNALRNN---------KME----E 192 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE--------HHHHHHHHHHHHHcC---------CHH----H
Confidence 45688999999999999999998 5544432 345555 233444555544321 112 2
Q ss_pred HHHHhcCCcEEEEEecCCChh---hH-HHHHhcCCC-CCCCcEEEEeeCc
Q 003399 258 LHEYIMTKRYLIVIDDVWTIR---MW-DVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~~---~~-~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
+.+.+++ .-+||+||+.... .+ +.+...+.. ...|..||+||..
T Consensus 193 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 193 FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 2333333 3388899997531 12 223222221 1234567887753
No 200
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.22 E-value=0.018 Score=70.00 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=66.6
Q ss_pred CCeEeccccHHHHHHHHHcCC-------CCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGP-------PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQI 229 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 229 (823)
..++|.+..++.+.+.+.... ....++.++|..|+|||++|+.+.. .....-...+.++ .+.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d--~s~~~~~~~- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRID--MSEYMEKHS- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEe--chhhcccch-
Confidence 469999999999999887521 1246788999999999999999987 3322222334444 443222111
Q ss_pred HHHHHHHh-CCCCCCcccccCCHHHHHHHHHHHhcC-CcEEEEEecCCCh--hhHHHHHhcCC
Q 003399 230 VDIIIKFL-MPSSRLSEIEDKNYEMKKIILHEYIMT-KRYLIVIDDVWTI--RMWDVIREILP 288 (823)
Q Consensus 230 ~~~i~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw~~--~~~~~l~~~~~ 288 (823)
...+ +..... ....... .+.+.++. ...+|+||++... +.+..+...+.
T Consensus 640 ----~~~l~g~~~g~--~g~~~~g----~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 640 ----VARLIGAPPGY--VGYEEGG----QLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred ----HHHhcCCCCCc--cCccccc----HHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHh
Confidence 1122 211110 0001111 23333333 3458999999865 45666666554
No 201
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.20 E-value=0.009 Score=58.61 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=37.1
Q ss_pred EeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC
Q 003399 160 VGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE 218 (823)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 218 (823)
..+.......++.|.. ..++.+.|.+|.|||.||.+..-+.-....|+.++++..
T Consensus 3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRP 57 (205)
T ss_dssp ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-
T ss_pred cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 4456667777888873 569999999999999999888765444578888888763
No 202
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.17 E-value=0.0028 Score=62.82 Aligned_cols=214 Identities=16% Similarity=0.151 Sum_probs=132.1
Q ss_pred cccCccccceeeccCCCCc-----ccchhhhhcCCCccEEeCCCCcc----cccc-------hhhcCCCCCceeeccCcc
Q 003399 538 GIENLFLLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPFSYI----DHTA-------DEFWKMNKLRHLNFGSIT 601 (823)
Q Consensus 538 ~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l----~~lp-------~~i~~L~~L~~L~l~~~~ 601 (823)
.+.-+..+..++||+|.|. .+..-| .+-.+|+..++++-.. .++| +.+-++++|+..+||.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~i-a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVI-ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHH-hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3445778899999999887 344555 6778899999886521 1233 345678999999999987
Q ss_pred cCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccccc--chhhHH---------HhhcCCCCCcEEEee
Q 003399 602 LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSY--NQSLLS---------KSLCRLSCLESLKLA 670 (823)
Q Consensus 602 ~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~--~~~~l~---------~~l~~l~~L~~L~l~ 670 (823)
+....++ .+.+.+..-+.|.+|.+++|.-. ....+. ....+.+.|++....
T Consensus 104 fg~~~~e------------------~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 104 FGSEFPE------------------ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred cCcccch------------------HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 6543222 12233677788999999988611 111121 233455777777665
Q ss_pred cCCCCCCCcEEe----eCCcCcccCccEeEeecccCCCCCcc-----cccCCCCCCeEEeecCccCCcc---ccccCCCC
Q 003399 671 NESKMPRLSKIA----LAEYLFPHSLTHLSFSNTVLMDDPMP-----TLEKLPLLQVLKLKQNSYSGRK---LTCGSYGF 738 (823)
Q Consensus 671 ~~~~~~~L~~L~----l~~~~~~~~L~~L~L~~~~l~~~~~~-----~l~~l~~L~~L~L~~~~~~~~~---~~~~~~~~ 738 (823)
.|. +..-. -.+..+-.+|..+.+..|.+...... .+..+.+|+.|+|..|.++-.. +.......
T Consensus 166 rNR----lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 166 RNR----LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred cch----hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 431 11100 00002225788888888877544322 2456889999999988776421 22334556
Q ss_pred CcccEEeeecCCCCcce-------eecccccccccEEEeecCCC
Q 003399 739 PNLKVLHLKSMLWLEEW-------TMGNAAMPKLECLIINPCAY 775 (823)
Q Consensus 739 ~~L~~L~L~~~~~l~~~-------~~~~~~lp~L~~L~i~~C~~ 775 (823)
+.|+.|.+.+|- ++.- .+....+|+|..|...++..
T Consensus 242 ~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 242 NLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred chhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 779999999884 2211 12234578888888777654
No 203
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.16 E-value=0.023 Score=62.56 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=63.0
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-CCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHH
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-YDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHE 260 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 260 (823)
++.|.|+-++||||+++.+... ..+. .+++. .-.. .+..++ .+....+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~--~~d~~~~~~~l----------------------~d~~~~~~~ 89 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYIN--FDDLRLDRIEL----------------------LDLLRAYIE 89 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEE--ecchhcchhhH----------------------HHHHHHHHH
Confidence 9999999999999999777662 2222 45554 1111 111111 111111111
Q ss_pred HhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 261 YIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 261 ~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
.-..++.+|+||.|....+|+.....+.+.++. +|++|+-+..+..
T Consensus 90 ~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 90 LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLS 135 (398)
T ss_pred hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhc
Confidence 112278899999999999999988888877766 8999988876655
No 204
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.15 E-value=0.051 Score=62.62 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=38.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+...+.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988754 345677899999999999998865
No 205
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.15 E-value=0.0098 Score=71.80 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.++.++.+.+.+... .....++.++|..|+|||.||+.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999988542 22356789999999999999998876
No 206
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.10 E-value=0.043 Score=52.25 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=66.6
Q ss_pred ccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC----cccc--------------cCcceeEEEeCCCCC-
Q 003399 162 LDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS----SYVK--------------HYFDCHAWISEPYSN- 222 (823)
Q Consensus 162 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~~--------------~~F~~~~wv~~~vs~- 222 (823)
-++..+.+.+.+..+. -...+-++|..|+||+|+|..+.+. .... ....-..|+. -..
T Consensus 2 q~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~--~~~~ 78 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK--PDKK 78 (162)
T ss_dssp -HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE--TTTS
T ss_pred cHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe--cccc
Confidence 3445566666665543 3456889999999999998887542 1110 1122233333 121
Q ss_pred --CCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEE
Q 003399 223 --EYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLI 298 (823)
Q Consensus 223 --~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~Iiv 298 (823)
...+.++. ++...+..... .+++=.+|+||+... +....+...+-....++++|+
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~~--------------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSPS--------------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS-T--------------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred cchhhHHHHH-HHHHHHHHHHh--------------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 12222222 33332222110 135668899999875 567777777766667899999
Q ss_pred eeCcch
Q 003399 299 TLTDIE 304 (823)
Q Consensus 299 TTR~~~ 304 (823)
+|++.+
T Consensus 138 ~t~~~~ 143 (162)
T PF13177_consen 138 ITNNPS 143 (162)
T ss_dssp EES-GG
T ss_pred EECChH
Confidence 988765
No 207
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.042 Score=59.16 Aligned_cols=121 Identities=15% Similarity=0.137 Sum_probs=74.7
Q ss_pred CeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc---------------------CcceeEEE
Q 003399 158 DTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH---------------------YFDCHAWI 216 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~~wv 216 (823)
.++|-+.....+..+..........+-++|+.|+||||+|..+.+. +-. ..+-+..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 4677777888888888754433446999999999999999998873 221 11233344
Q ss_pred eCCCCCCCC---HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChh--hHHHHHhcCCCCC
Q 003399 217 SEPYSNEYD---ADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIR--MWDVIREILPDNQ 291 (823)
Q Consensus 217 ~~~vs~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~--~~~~l~~~~~~~~ 291 (823)
. .|.... ..+..+++.+....... .++.-++++|+++... .-..+...+....
T Consensus 80 ~--~s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~ 137 (325)
T COG0470 80 N--PSDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPP 137 (325)
T ss_pred c--ccccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCC
Confidence 4 333332 23333333333322110 3567789999998763 4455655555556
Q ss_pred CCcEEEEeeCc
Q 003399 292 NGSRVLITLTD 302 (823)
Q Consensus 292 ~gs~IivTTR~ 302 (823)
..+.+|++|..
T Consensus 138 ~~~~~il~~n~ 148 (325)
T COG0470 138 KNTRFILITND 148 (325)
T ss_pred CCeEEEEEcCC
Confidence 67888888874
No 208
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.28 Score=53.05 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=48.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCc--ceeEEEeCCCCC-CCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWISEPYSN-EYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKI 256 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 256 (823)
-.++.++|..|+||||++.++.. +....+ ..+..++ ... .....+-++...+.++.... ...+..++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit--~D~~R~ga~EqL~~~a~~~gv~~~----~~~~~~~l~~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLT--TDSYRIGGHEQLRIFGKILGVPVH----AVKDGGDLQL 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEe--cccccccHHHHHHHHHHHcCCceE----ecCCcccHHH
Confidence 46899999999999999999987 333233 3455555 222 22333444445555544221 1222233333
Q ss_pred HHHHHhcCCcEEEEEecCCC
Q 003399 257 ILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 257 ~l~~~L~~kr~LlVlDdvw~ 276 (823)
.+ ..+.++ =+|++|..-.
T Consensus 209 ~l-~~l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 209 AL-AELRNK-HMVLIDTIGM 226 (374)
T ss_pred HH-HHhcCC-CEEEEcCCCC
Confidence 33 334455 4556888743
No 209
>PRK07667 uridine kinase; Provisional
Probab=96.06 E-value=0.008 Score=59.23 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+.+.+.+........+|||-|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5677778877666779999999999999999999987
No 210
>CHL00176 ftsH cell division protein; Validated
Probab=96.06 E-value=0.014 Score=67.71 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=34.4
Q ss_pred CCeEeccccHHHHHHHH---HcCC-------CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLL---IEGP-------PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++++.+.+ .... ...+-|.++|.+|.|||+||+++++
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 57889887777665554 3221 2245689999999999999999988
No 211
>PRK06696 uridine kinase; Validated
Probab=96.04 E-value=0.0058 Score=61.79 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=33.5
Q ss_pred ccccHHHHHHHHHc-CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 162 LDDRMEELLDLLIE-GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 162 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
|.+-+++|.+.+.. ......+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 55667777777764 334688999999999999999999987
No 212
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.04 E-value=0.012 Score=69.57 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=37.8
Q ss_pred CCeEeccccHHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.++.++.|.+.+... ......+-++|+.|+|||++|+.+..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999988732 12345788999999999999999987
No 213
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.047 Score=63.57 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+...+.+..++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999987653 345677899999999999999876
No 214
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.032 Score=60.11 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|-++..+.+...+..+. -...+-|.|..|+||||+|+.+.+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 689999999999999987654 345688999999999999998876
No 215
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00087 Score=66.58 Aligned_cols=80 Identities=20% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc--hhhcCCCCCcee
Q 003399 518 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA--DEFWKMNKLRHL 595 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L 595 (823)
.+.+.+-|++.||.+..+. -+.+|..|..|.||=|+|+.|.+ +..|++|+.|.|+.|.|..+- ..+.++++||.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3456677888888877553 24467888888888888888765 378888888888888777663 456778888887
Q ss_pred eccCc
Q 003399 596 NFGSI 600 (823)
Q Consensus 596 ~l~~~ 600 (823)
-|..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 66554
No 216
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.01 E-value=0.017 Score=53.80 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999985
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.00 E-value=0.012 Score=67.78 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=39.3
Q ss_pred CCeEeccccHHHHHHHHHcCC---CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGP---PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|-++.++++..++.... ...+++.|+|..|+||||+++.+.+
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999987642 2346899999999999999999997
No 218
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.97 E-value=0.039 Score=53.67 Aligned_cols=123 Identities=12% Similarity=0.176 Sum_probs=64.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-CCCCCCCHHHHHH------HHHHHhCCCCCCcc-cccCCH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-PYSNEYDADQIVD------IIIKFLMPSSRLSE-IEDKNY 251 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~------~i~~~l~~~~~~~~-~~~~~~ 251 (823)
-.+++|+|..|.|||||++.++.. . ......+++.. .+.. .+...... ++++.++....... ....+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 458999999999999999999973 2 23444455431 1221 22222211 24455444221000 111222
Q ss_pred -HHHHHHHHHHhcCCcEEEEEecCCCh---hhHHHHHhcCCCC-C-CCcEEEEeeCcchhh
Q 003399 252 -EMKKIILHEYIMTKRYLIVIDDVWTI---RMWDVIREILPDN-Q-NGSRVLITLTDIEMV 306 (823)
Q Consensus 252 -~~~~~~l~~~L~~kr~LlVlDdvw~~---~~~~~l~~~~~~~-~-~gs~IivTTR~~~v~ 306 (823)
+...-.+-..+-..+-++++|+--.. ...+.+...+... . .|..||++|.+.+..
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22233445555667788899987543 2333333333221 1 266788888776543
No 219
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.94 E-value=0.059 Score=64.98 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=40.2
Q ss_pred CCeEeccccHHHHHHHHHc----CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE----GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.+++|.+..++.|.+++.. +.....++.++|.+|+|||++|+.+.+ .....|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 4688999999999887642 222345899999999999999999998 454444
No 220
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.0014 Score=65.17 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=76.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhh-hhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSL-LSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~~L~~L 569 (823)
..+++-|.++++.... -.+..+|+.|.||.|+-|.|+++-. +..+++|+.|.|+.|.|..+.+-. +.+|++|
T Consensus 18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 4566778888877642 3578999999999999999987754 889999999999999988775421 3789999
Q ss_pred cEEeCCCC-ccccc-c----hhhcCCCCCceee
Q 003399 570 YTLDMPFS-YIDHT-A----DEFWKMNKLRHLN 596 (823)
Q Consensus 570 ~~L~L~~~-~l~~l-p----~~i~~L~~L~~L~ 596 (823)
++|.|..| ....- + ..+.-|+||+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999877 33222 2 2366799999986
No 221
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.88 E-value=0.044 Score=55.21 Aligned_cols=53 Identities=21% Similarity=0.045 Sum_probs=37.0
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD 225 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~ 225 (823)
+-++|..+=..-.++.|.|.+|+||||+|.++.. .....=..++|++ ....++
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~--~e~~~~ 60 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYID--TEGLSS 60 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--CCCCCH
Confidence 3344444434568999999999999999999886 3433344678888 655554
No 222
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.87 E-value=0.023 Score=57.85 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEE-EeCCCCCCCCHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAW-ISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~vs~~~~~~~~~~~i~~ 235 (823)
.+++|.+..++.+.+.+... ...+...+|++|.|||+-|.++...---.+.|.+++- .+ +|..-... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln--aSderGis-vvr~--- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN--ASDERGIS-VVRE--- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc--cccccccc-chhh---
Confidence 57899999999999998873 4788899999999999988887763222455654443 23 33322111 0000
Q ss_pred HhCCCCCCcccccCCHHHHHHHHHHHh--cCCc-EEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 236 FLMPSSRLSEIEDKNYEMKKIILHEYI--MTKR-YLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
...+.+.+........ ..++ =.+|||+++.. +.|..+..........++.|..|....
T Consensus 108 -----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 108 -----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred -----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChh
Confidence 0011111111110000 0133 36789999886 689999988887777777666655443
No 223
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.0064 Score=55.78 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=26.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccC-cceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~ 217 (823)
.--|+|.||+|+||||+++.+.+ ..+.. |...=+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 34589999999999999999998 55443 65443433
No 224
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.84 E-value=0.0047 Score=61.38 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=56.1
Q ss_pred ccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCC--ccc-ccchhhcCCCCCceeeccCcccCCCCCCCcCCCcc
Q 003399 539 IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFS--YID-HTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLEN 615 (823)
Q Consensus 539 i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~ 615 (823)
.-.+..|.+|++.++.++.+-. +-.|++|+.|+++.| .+. .++.-..++++|++|++++|.+..
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~----------- 105 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD----------- 105 (260)
T ss_pred cccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-----------
Confidence 3445667777777766554432 136789999999988 443 445556677999999999998764
Q ss_pred cceeeccCCCcccccccCCCCccceEEeeccc
Q 003399 616 LNFISALHPCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 616 L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
...+.. +..+.+|..|.+.+|.
T Consensus 106 ---------lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 106 ---------LSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred ---------ccccch-hhhhcchhhhhcccCC
Confidence 111222 5556666677776665
No 225
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.83 E-value=0.075 Score=55.14 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHH
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQI 229 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~ 229 (823)
++++..++..+ .-|-+.|.+|+|||++|+.+.+ ..... ...++ .+...+..++
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~~---~~~i~--~~~~~~~~dl 63 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDRP---VMLIN--GDAELTTSDL 63 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCCC---EEEEe--CCccCCHHHH
Confidence 34444544432 3456899999999999999986 33322 33444 4554444444
No 226
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.82 E-value=0.0063 Score=56.42 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=29.4
Q ss_pred EEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHH
Q 003399 183 VVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVD 231 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~ 231 (823)
|-++|..|+|||+||+.++. ..... ..-+. ++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~~---~~~i~--~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGRP---VIRIN--CSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTCE---EEEEE---TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhcc---eEEEE--ecccccccccee
Confidence 56899999999999999997 33222 22345 677777776653
No 227
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.034 Score=62.77 Aligned_cols=102 Identities=22% Similarity=0.223 Sum_probs=65.6
Q ss_pred CCeEeccccHHHHHHHHHcC----CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG----PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDI 232 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~ 232 (823)
.+-+|+++-+++|++++.-+ ..+-++++.+|++|||||.+|+.|+. .....|- -++ |+.-.|+.+|-..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfS--vGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFS--VGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEe--ccccccHHhhccc
Confidence 47799999999999998643 44578999999999999999999997 5555552 234 6666666554211
Q ss_pred HHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 003399 233 IIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
=-. .-..-+..+++.+++ .+...-|+.+|.|+.
T Consensus 484 RRT----------YVGAMPGkiIq~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 484 RRT----------YVGAMPGKIIQCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred cee----------eeccCChHHHHHHHh-hCCCCceEEeehhhh
Confidence 000 001111222332222 234667888999965
No 228
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.80 E-value=0.033 Score=58.08 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=84.6
Q ss_pred EeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC-cccccCcceeEEEeC---CCCCCCC---------H
Q 003399 160 VGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS-SYVKHYFDCHAWISE---PYSNEYD---------A 226 (823)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~---~vs~~~~---------~ 226 (823)
-+|+.+..--+++|..++ +..|.+.|.+|.|||-||-+..=. ...++.|..++ |+. ++++... +
T Consensus 227 ~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii-VtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 227 RPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII-VTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred CcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE-EecCCcCcccccCcCCCchhhhc
Confidence 346666666677787766 999999999999999888664321 12234444333 221 1333211 1
Q ss_pred HHHHHHHHHHhCCCCCCcccccCCHHHHHHHH---------HHHhcCC---cEEEEEecCCChhhHHHHHhcCCCCCCCc
Q 003399 227 DQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL---------HEYIMTK---RYLIVIDDVWTIRMWDVIREILPDNQNGS 294 (823)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l---------~~~L~~k---r~LlVlDdvw~~~~~~~l~~~~~~~~~gs 294 (823)
.--.+.|...+..-.. .+......+...+ ..+.+++ +-+||+|...+..- .+++..+...+.||
T Consensus 304 ~PWmq~i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~Gs 379 (436)
T COG1875 304 GPWMQAIFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGS 379 (436)
T ss_pred cchHHHHHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCC
Confidence 1112222222211000 0111111111111 1122332 46899999977532 23444455567899
Q ss_pred EEEEeeCcchhhhcccccCCCCCCCChhhhHHhHHHHcCCcceeeee
Q 003399 295 RVLITLTDIEMVTSFQLEDGENIRLDLVPTGGPLRATYKGWPFFILY 341 (823)
Q Consensus 295 ~IivTTR~~~v~~~~~f~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 341 (823)
||+.|---.++-. ..-.+.-.----++++.+|.|+...+
T Consensus 380 KIVl~gd~aQiD~--------~yl~~~snGLtyvverfk~~~l~~hi 418 (436)
T COG1875 380 KIVLTGDPAQIDT--------PYLDETSNGLTYVVEKFKGHPLSAHI 418 (436)
T ss_pred EEEEcCCHHHcCC--------ccccCCCccHHHHHHHhcCCCceeEE
Confidence 9998843222211 00011111234567899999988766
No 229
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.80 E-value=0.0068 Score=67.66 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=39.9
Q ss_pred CCeEeccccHHHHHHHHHc----CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.+++|++.|.. -+..-+++.++|+.|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5689999999999999932 244568999999999999999999987
No 230
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.79 E-value=0.11 Score=53.62 Aligned_cols=132 Identities=13% Similarity=0.056 Sum_probs=73.1
Q ss_pred cHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-CCCCCCCHHHHHHHHHHHhCC--CC
Q 003399 165 RMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-PYSNEYDADQIVDIIIKFLMP--SS 241 (823)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~--~~ 241 (823)
..+.++..|... .+..-++|+|..|.|||||.+.+.. .++. ....+++.. .+... + -..++...... +.
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~--~~~~-~~G~i~~~g~~v~~~-d---~~~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLAR--ILST-GISQLGLRGKKVGIV-D---ERSEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhC--ccCC-CCceEEECCEEeecc-h---hHHHHHHHhcccccc
Confidence 455566666543 2367899999999999999999997 3332 233444431 02111 1 11233333222 11
Q ss_pred CC-cccccCCHHHHHHHHHHHhc-CCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 242 RL-SEIEDKNYEMKKIILHEYIM-TKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 242 ~~-~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
.. +..+..+...-...+...+. ..+=++++|.+-..+.+..+...+. .|..||+||-+..+..
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00 00011111111222333333 5788999999988877777766653 4778999998766643
No 231
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.78 E-value=0.02 Score=65.33 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=34.3
Q ss_pred CCeEeccccHHHHHHHHH---c-------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLI---E-------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++++.+++. . +....+-+-++|.+|.|||++|+++.+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 568898887777665443 1 112244588999999999999999998
No 232
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.07 Score=61.27 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.+++|-+..++.+..++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999997654 3456889999999999999999873
No 233
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.02 Score=56.24 Aligned_cols=79 Identities=15% Similarity=-0.011 Sum_probs=45.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
.+.+|||-|.+|.||||+|+.+++ .+...+-..+-.+ .|-...-.....+...-..+. .+..+.+-+...|
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~~I~~D-----~YYk~~~~~~~~~~~~~n~d~--p~A~D~dLl~~~L 77 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVVVISLD-----DYYKDQSHLPFEERNKINYDH--PEAFDLDLLIEHL 77 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcceEeecc-----ccccchhhcCHhhcCCcCccC--hhhhcHHHHHHHH
Confidence 468999999999999999999998 5554422222211 111111011111111111111 3456677777888
Q ss_pred HHHhcCCc
Q 003399 259 HEYIMTKR 266 (823)
Q Consensus 259 ~~~L~~kr 266 (823)
...+++++
T Consensus 78 ~~L~~g~~ 85 (218)
T COG0572 78 KDLKQGKP 85 (218)
T ss_pred HHHHcCCc
Confidence 88888776
No 234
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.059 Score=62.66 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.+++|.+...+.|..++..+. -...+-++|..|+||||+|+.+++.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 578999999999999888653 2356788999999999999999873
No 235
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.72 E-value=0.016 Score=59.77 Aligned_cols=105 Identities=20% Similarity=0.143 Sum_probs=59.5
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccC----cceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCc
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY----FDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLS 244 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~ 244 (823)
|-++|..+=..-.+.-|+|.+|+|||.|+.+++-...+... =..++|++ -...|+..++. +|++....+.+..
T Consensus 27 lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid--Te~~f~~~Rl~-~i~~~~~~~~~~~ 103 (256)
T PF08423_consen 27 LDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID--TEGTFSPERLQ-QIAERFGLDPEEI 103 (256)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE--SSSSS-HHHHH-HHHHHTTS-HHHH
T ss_pred HHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe--CCCCCCHHHHH-HHhhccccccchh
Confidence 33344333234568999999999999999877532222221 23699999 88899988875 4666544321000
Q ss_pred -----ccccCCHHHHHHHH---HHHh-cCCcEEEEEecCCC
Q 003399 245 -----EIEDKNYEMKKIIL---HEYI-MTKRYLIVIDDVWT 276 (823)
Q Consensus 245 -----~~~~~~~~~~~~~l---~~~L-~~kr~LlVlDdvw~ 276 (823)
-....+.+++...+ ...+ ..+--|||+|.+-.
T Consensus 104 l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 104 LDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred hhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHH
Confidence 01223344443333 3333 23455888888743
No 236
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.65 E-value=0.033 Score=58.75 Aligned_cols=98 Identities=19% Similarity=0.056 Sum_probs=61.0
Q ss_pred HHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC-ccc
Q 003399 169 LLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL-SEI 246 (823)
Q Consensus 169 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~-~~~ 246 (823)
+-.+|. .+=+.-+++-|+|.+|+||||||.++.. .....-..++|++ ....++.. .+++++...+. --.
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId--~E~~~~~~-----~a~~lGvd~~~l~v~ 113 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFID--AEHALDPV-----YARKLGVDIDNLLVS 113 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEc--ccchhHHH-----HHHHcCCCHHHeEEe
Confidence 334443 3434568999999999999999988776 3444445778998 66665543 34445432110 001
Q ss_pred ccCCHHHHHHHHHHHhc-CCcEEEEEecCC
Q 003399 247 EDKNYEMKKIILHEYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 247 ~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw 275 (823)
...+.++....+...++ +.--+||+|-|-
T Consensus 114 ~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 114 QPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred cCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 23445666666666554 356789999985
No 237
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.64 E-value=0.04 Score=62.86 Aligned_cols=99 Identities=10% Similarity=0.199 Sum_probs=56.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCc--ceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYF--DCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
...+.|+|..|.|||.|++++.+ .....+ -.+++++ ..++..++...+... . ...
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit--------aeef~~el~~al~~~---------~----~~~ 370 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS--------SEEFTNEFINSIRDG---------K----GDS 370 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee--------HHHHHHHHHHHHHhc---------c----HHH
Confidence 35589999999999999999999 554332 2455666 334444444443221 1 112
Q ss_pred HHHHhcCCcEEEEEecCCCh---hhHH-HHHhcCCC-CCCCcEEEEeeCc
Q 003399 258 LHEYIMTKRYLIVIDDVWTI---RMWD-VIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~---~~~~-~l~~~~~~-~~~gs~IivTTR~ 302 (823)
+++.+++ -=+|||||+... +.|+ .+...+.. ...|..|||||+.
T Consensus 371 f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 371 FRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred HHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 3333333 347888999654 2232 22222221 1235568888865
No 238
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.63 E-value=0.044 Score=55.61 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 177 PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.....+|+|.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999987
No 239
>PRK13695 putative NTPase; Provisional
Probab=95.63 E-value=0.0084 Score=58.04 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=24.6
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccc-cCcceeEEEe
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWIS 217 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~ 217 (823)
-|+|.|.+|+|||||++.+++. .+ ..|....|++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~--l~~~G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL--LKEEGYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEc
Confidence 3789999999999999999873 32 2344444544
No 240
>PRK08233 hypothetical protein; Provisional
Probab=95.63 E-value=0.036 Score=54.00 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 241
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.61 E-value=0.07 Score=63.65 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=39.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..++|+...++.+.+.+..-.....-|-|.|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 57999999999988877654334567889999999999999999974
No 242
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.054 Score=59.08 Aligned_cols=112 Identities=15% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCeEecccc---HHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCH
Q 003399 157 RDTVGLDDR---MEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDA 226 (823)
Q Consensus 157 ~~~vGr~~~---~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~ 226 (823)
.++-|.|+. +++|+++|.+. ..-++=|-++|++|.|||-||++|+..+.| .| |.. .+.+|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V--PF----F~~--sGSEF-- 373 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV--PF----FYA--SGSEF-- 373 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--Ce----Eec--cccch--
Confidence 567787765 56677888764 223667889999999999999999984333 23 222 23333
Q ss_pred HHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhc----CCcEEEEEecCCCh-------------hhHHHHHhcCCC
Q 003399 227 DQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM----TKRYLIVIDDVWTI-------------RMWDVIREILPD 289 (823)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~----~kr~LlVlDdvw~~-------------~~~~~l~~~~~~ 289 (823)
+++-+...+.++++.++ .-.+.|.+|.++.. ..+.++...+..
T Consensus 374 --------------------dEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG 433 (752)
T KOG0734|consen 374 --------------------DEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG 433 (752)
T ss_pred --------------------hhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcC
Confidence 22333444555665553 46799999998753 134556666665
Q ss_pred CCCCcEEEE
Q 003399 290 NQNGSRVLI 298 (823)
Q Consensus 290 ~~~gs~Iiv 298 (823)
+.+..-|||
T Consensus 434 F~qNeGiIv 442 (752)
T KOG0734|consen 434 FKQNEGIIV 442 (752)
T ss_pred cCcCCceEE
Confidence 554444444
No 243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.59 E-value=0.021 Score=68.62 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=37.0
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++.|.+..++++.+++... -...+-|.++|.+|.||||||+++++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 46889999999998877421 12346688999999999999999998
No 244
>PRK06762 hypothetical protein; Provisional
Probab=95.57 E-value=0.048 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 245
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.56 E-value=0.04 Score=58.96 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccC----cceeEEEeCCCCCCCCHHHHHHHHHHHhC
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY----FDCHAWISEPYSNEYDADQIVDIIIKFLM 238 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 238 (823)
+-++|..+=..-.++-|+|.+|+|||++|.++.-....... =..++||+ ....|+..++.+ +++.++
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~--te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID--TEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe--CCCCcCHHHHHH-HHHHcC
Confidence 34445444345789999999999999999888643211111 14799999 888888877653 445444
No 246
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.56 E-value=0.045 Score=58.72 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=39.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|....+.++.+.+..-...-.-|-|.|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999998876544456688999999999999999986
No 247
>PRK04296 thymidine kinase; Provisional
Probab=95.55 E-value=0.029 Score=55.00 Aligned_cols=113 Identities=12% Similarity=-0.027 Sum_probs=63.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHE 260 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 260 (823)
.++-|.|..|.||||+|..... +...+-..++.+. ..++.+.....++++++..... .......+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k----~~~d~~~~~~~i~~~lg~~~~~--~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK----PAIDDRYGEGKVVSRIGLSREA--IPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe----ccccccccCCcEecCCCCcccc--eEeCChHHHHHHHHh
Confidence 4677899999999999988887 4444433344332 1112222233445555432110 112334555555555
Q ss_pred HhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 261 YIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 261 ~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
..++.-+||+|.+.-. ++..++...+ ...|-.||+|.++.+
T Consensus 75 -~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 -EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred -hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 3335568999999542 3333333332 235788999998865
No 248
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.55 E-value=0.036 Score=58.55 Aligned_cols=98 Identities=22% Similarity=0.093 Sum_probs=61.3
Q ss_pred HHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 003399 169 LLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-LSEI 246 (823)
Q Consensus 169 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~~ 246 (823)
|-.+|. .+=+.-+++-|+|.+|+||||||.+++- .....-..++|++ ....++.. .+++++...+ .--.
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId--~E~~~~~~-----~a~~lGvd~~~l~v~ 113 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFID--AEHALDPV-----YAKKLGVDLDNLLIS 113 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEC--ccccHHHH-----HHHHcCCCHHHheec
Confidence 334444 3334567899999999999999998775 3444456788998 77766653 3344433210 0001
Q ss_pred ccCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 003399 247 EDKNYEMKKIILHEYIMT-KRYLIVIDDVW 275 (823)
Q Consensus 247 ~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw 275 (823)
...+.++....+...++. .--+||+|-|-
T Consensus 114 ~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 114 QPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred CCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 234556666666665544 56789999874
No 249
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.54 E-value=0.13 Score=55.30 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHcCC-CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 163 DDRMEELLDLLIEGP-PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 163 ~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.-.+.+.+.+...+ ....+|||.|.=|+||||+.+.+.+
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567777777653 5789999999999999999999987
No 250
>PRK09354 recA recombinase A; Provisional
Probab=95.53 E-value=0.043 Score=58.40 Aligned_cols=98 Identities=23% Similarity=0.096 Sum_probs=62.7
Q ss_pred HHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-Cccc
Q 003399 169 LLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-LSEI 246 (823)
Q Consensus 169 l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~~ 246 (823)
|-.+|. .+=+.-+++-|+|..|+||||||.++.. .....-..++||+ .-..++.. .+++++..-+ .--.
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId--~E~s~~~~-----~a~~lGvdld~lli~ 118 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFID--AEHALDPV-----YAKKLGVDIDNLLVS 118 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEC--CccchHHH-----HHHHcCCCHHHeEEe
Confidence 334454 3434568999999999999999998876 3444456788999 77777653 3445543210 0001
Q ss_pred ccCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 003399 247 EDKNYEMKKIILHEYIMT-KRYLIVIDDVW 275 (823)
Q Consensus 247 ~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw 275 (823)
...+.++....+...++. +--+||+|-|-
T Consensus 119 qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 119 QPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred cCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 233456666666666544 56699999985
No 251
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.52 E-value=0.12 Score=59.26 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=41.2
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..++|....++++.+.+..-...-.-|-|.|..|+|||++|+.+++.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 68999999999999988775555667889999999999999999973
No 252
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.50 E-value=0.048 Score=51.17 Aligned_cols=120 Identities=10% Similarity=-0.027 Sum_probs=61.8
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-CCCCCCCHHHHHHHHHHHh-----CCCCC----CcccccCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-PYSNEYDADQIVDIIIKFL-----MPSSR----LSEIEDKN 250 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l-----~~~~~----~~~~~~~~ 250 (823)
.+|-|++-.|.||||+|....- +...+=-.+.++-- +-........+++.+ ..+ +.... .+......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888999999999987765 33332223333220 022233444444333 000 00000 00000011
Q ss_pred HHHHHHHHHHHhcC-CcEEEEEecCCCh-----hhHHHHHhcCCCCCCCcEEEEeeCcc
Q 003399 251 YEMKKIILHEYIMT-KRYLIVIDDVWTI-----RMWDVIREILPDNQNGSRVLITLTDI 303 (823)
Q Consensus 251 ~~~~~~~l~~~L~~-kr~LlVlDdvw~~-----~~~~~l~~~~~~~~~gs~IivTTR~~ 303 (823)
..+.....++.+.. +-=|||||++-.. .+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233444555544 4459999998543 24455555555555577899999984
No 253
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.46 E-value=0.093 Score=50.93 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.+++|.|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999873
No 254
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.46 E-value=0.063 Score=52.92 Aligned_cols=83 Identities=14% Similarity=0.088 Sum_probs=43.6
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccC-cc---eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHY-FD---CHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~---~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
||||.|.+|+||||+|+++.. ..... +. ....+. ....++....... -...............+.+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~--~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~ 75 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILS--LDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKED 75 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEE--GGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEe--ecccccccchhhH-hhccccccCCCCccccCHHHHHHH
Confidence 799999999999999999987 44322 22 133333 2222222222211 111111111001345667777777
Q ss_pred HHHHhcCCcEEE
Q 003399 258 LHEYIMTKRYLI 269 (823)
Q Consensus 258 l~~~L~~kr~Ll 269 (823)
+....+++.+-+
T Consensus 76 l~~L~~g~~i~~ 87 (194)
T PF00485_consen 76 LKALKNGGSIEI 87 (194)
T ss_dssp HHHHHTTSCEEE
T ss_pred HHHHhCCCcccc
Confidence 777666665433
No 255
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.44 E-value=0.11 Score=58.89 Aligned_cols=134 Identities=17% Similarity=0.093 Sum_probs=87.1
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhCCcc------cccCcceeEEEeCCCCCCCCHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYNSSY------VKHYFDCHAWISEPYSNEYDAD 227 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------~~~~F~~~~wv~~~vs~~~~~~ 227 (823)
..+-+|+.+..+|..++... +..-..+.|.|-+|.|||..+..|.+.-. --..|+ .+.|. .-.-....
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveIN--gm~l~~~~ 472 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEIN--GLRLASPR 472 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEc--ceeecCHH
Confidence 57889999999999988653 23455899999999999999999987311 122343 22232 22234588
Q ss_pred HHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhc-----CCcEEEEEecCCChhh--HHHHHhcCCC-CCCCcEEEEe
Q 003399 228 QIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM-----TKRYLIVIDDVWTIRM--WDVIREILPD-NQNGSRVLIT 299 (823)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdvw~~~~--~~~l~~~~~~-~~~gs~IivT 299 (823)
++...|...+.+... ........+..++. .+..+|++|+++..-. -+-+-..|.| ..++||++|.
T Consensus 473 ~~Y~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 473 EIYEKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 999999999988543 34445555555554 3678888888754310 1222223333 4578888776
Q ss_pred e
Q 003399 300 L 300 (823)
Q Consensus 300 T 300 (823)
+
T Consensus 546 ~ 546 (767)
T KOG1514|consen 546 A 546 (767)
T ss_pred E
Confidence 4
No 256
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.42 E-value=0.013 Score=54.33 Aligned_cols=44 Identities=25% Similarity=0.157 Sum_probs=32.7
Q ss_pred EeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 160 VGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
||.-..++++.+.+..-......|-|.|..|+||+++|+.++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777788887777654333566789999999999999999974
No 257
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.39 E-value=0.076 Score=51.19 Aligned_cols=116 Identities=13% Similarity=0.203 Sum_probs=59.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC-ccc--ccC---cc--eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-Ccc-cccC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS-SYV--KHY---FD--CHAWISEPYSNEYDADQIVDIIIKFLMPSSR-LSE-IEDK 249 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~--~~~---F~--~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~-~~~~ 249 (823)
-.+++|+|..|.|||||.+.+..+ -++ ... |. .+.|+. + .+.+..++.... ... ....
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~----q--------~~~l~~~~L~~~~~~~~~~~L 88 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID----Q--------LQFLIDVGLGYLTLGQKLSTL 88 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh----H--------HHHHHHcCCCccccCCCcCcC
Confidence 468999999999999999998632 111 111 11 122322 1 355666654321 000 1112
Q ss_pred CHH-HHHHHHHHHhcCC--cEEEEEecCCCh---hhHHHHHhcCCC-CCCCcEEEEeeCcchhhh
Q 003399 250 NYE-MKKIILHEYIMTK--RYLIVIDDVWTI---RMWDVIREILPD-NQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 250 ~~~-~~~~~l~~~L~~k--r~LlVlDdvw~~---~~~~~l~~~~~~-~~~gs~IivTTR~~~v~~ 307 (823)
+.. ...-.+-..+-.+ .=++++|.--.. ...+.+...+.. ...|..||++|.+.+.+.
T Consensus 89 SgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 89 SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222 2222334444455 667788987442 223333332221 124677888888876544
No 258
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.069 Score=58.21 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=60.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
....+.+.|.+|+|||+||..+.. ...|+.+=-++ . ++ +-..++.+-...+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiS----p----e~-----------------miG~sEsaKc~~i 587 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIIS----P----ED-----------------MIGLSESAKCAHI 587 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeC----h----HH-----------------ccCccHHHHHHHH
Confidence 466778899999999999999987 45676544444 1 00 1223344444555
Q ss_pred HHHh----cCCcEEEEEecCCChhhHHHHHhc------------CCC-CCCCcE--EEEeeCcchhhh
Q 003399 259 HEYI----MTKRYLIVIDDVWTIRMWDVIREI------------LPD-NQNGSR--VLITLTDIEMVT 307 (823)
Q Consensus 259 ~~~L----~~kr~LlVlDdvw~~~~~~~l~~~------------~~~-~~~gs~--IivTTR~~~v~~ 307 (823)
.+.+ +..--.||+||+...-+|-.++.. +.. ..+|-| |+-||....|..
T Consensus 588 ~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 588 KKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred HHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 5554 445678999999876555443332 221 123444 555666666666
No 259
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.35 E-value=0.032 Score=54.88 Aligned_cols=56 Identities=18% Similarity=0.093 Sum_probs=33.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCC-CCCHHHHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSN-EYDADQIVDIIIKFLMP 239 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~ 239 (823)
++||.++|..|+||||.+-+++. +.+..=..+..++ ... .....+-++..++.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis--~D~~R~ga~eQL~~~a~~l~v 57 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALIS--ADTYRIGAVEQLKTYAEILGV 57 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE--ESTSSTHHHHHHHHHHHHHTE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeec--CCCCCccHHHHHHHHHHHhcc
Confidence 47999999999999988877766 3333333455555 321 12233445555555554
No 260
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.34 E-value=0.037 Score=54.72 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=62.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHE 260 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 260 (823)
.+|.|+|..|.||||++..+.. .+.......+++-+ -.-++.... ...++.+ .+ . ..+.......++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e-~~~E~~~~~-~~~~i~q----~~---v-g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIE-DPIEFVHES-KRSLINQ----RE---V-GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEc-CCccccccC-ccceeee----cc---c-CCCccCHHHHHHH
Confidence 3689999999999999998876 44434444444331 111111000 0001110 00 0 1112334556777
Q ss_pred HhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 261 YIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 261 ~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
.+....=.|++|.+.+.+.+....... ..|-.|+.|+-..++..
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 777777799999998877655444332 23556777776555443
No 261
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.33 E-value=0.089 Score=56.35 Aligned_cols=105 Identities=14% Similarity=0.120 Sum_probs=61.8
Q ss_pred HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc----CcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC
Q 003399 168 ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL 243 (823)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~ 243 (823)
.+-++|..+=..-.++-|+|.+|+|||+||..++-...... .-..++|++ ....|+..++. +|++.++.....
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId--tE~~f~~eRl~-qia~~~~~~~~~ 187 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID--TEGTFRPQRLI-QIAERFGLNGAD 187 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE--CCCCccHHHHH-HHHHHcCCChhh
Confidence 34444555434578899999999999999987764212111 113799999 88888888764 556666542210
Q ss_pred --cc---cccCCHHHHHHHHH---HHhc-CCcEEEEEecCC
Q 003399 244 --SE---IEDKNYEMKKIILH---EYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 244 --~~---~~~~~~~~~~~~l~---~~L~-~kr~LlVlDdvw 275 (823)
.. ....+.++....+. ..+. .+--|||+|-+-
T Consensus 188 ~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 188 VLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred hccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 00 12233444333332 2232 355588888774
No 262
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.46 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|+|.+|+||||++.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999988876
No 263
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.29 E-value=0.028 Score=55.42 Aligned_cols=113 Identities=9% Similarity=0.091 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCccc
Q 003399 167 EELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEI 246 (823)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 246 (823)
.+.+..+.... -+++.|.|.+|.||||+++.+.+ .....=..++++. .+ .+....+.+..+...
T Consensus 7 ~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~a--pT-----~~Aa~~L~~~~~~~a----- 70 (196)
T PF13604_consen 7 REAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLA--PT-----NKAAKELREKTGIEA----- 70 (196)
T ss_dssp HHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEE--SS-----HHHHHHHHHHHTS-E-----
T ss_pred HHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEEC--Cc-----HHHHHHHHHhhCcch-----
Confidence 33444443333 46788899999999999999876 3333312344444 11 222333333333211
Q ss_pred ccCCHHHHHHHHHHHh------cCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEe
Q 003399 247 EDKNYEMKKIILHEYI------MTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLIT 299 (823)
Q Consensus 247 ~~~~~~~~~~~l~~~L------~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivT 299 (823)
.+...........- ..++-+||+|++... .++..+....+. .|+|+|+.
T Consensus 71 --~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 71 --QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp --EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred --hhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 01000000000000 233459999999875 467777766654 47788755
No 264
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.044 Score=59.38 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=58.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcc--eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKI 256 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 256 (823)
....+-|||..|.|||.|++++.+ ....... .++.++ ......+++..+... -..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~--------se~f~~~~v~a~~~~-------------~~~ 168 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT--------SEDFTNDFVKALRDN-------------EME 168 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc--------HHHHHHHHHHHHHhh-------------hHH
Confidence 478899999999999999999999 6666665 344444 223333333333221 123
Q ss_pred HHHHHhcCCcEEEEEecCCChh---hH-HHHHhcCCC-CCCCcEEEEeeCc
Q 003399 257 ILHEYIMTKRYLIVIDDVWTIR---MW-DVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 257 ~l~~~L~~kr~LlVlDdvw~~~---~~-~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
..++.. .-=++++||++... .| +.+...|.. ...|-.||+|++.
T Consensus 169 ~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 169 KFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred HHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 344444 33488899997532 22 233333331 1233489998754
No 265
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.087 Score=54.34 Aligned_cols=97 Identities=19% Similarity=0.035 Sum_probs=61.1
Q ss_pred HHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH-hCCCCCCcccccCC
Q 003399 172 LLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF-LMPSSRLSEIEDKN 250 (823)
Q Consensus 172 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~ 250 (823)
.|..+=+.-+++-|+|..|.||||+|-+++- ..+..-..++|++ .-..++..++. ++... +..-.- ....+
T Consensus 52 ~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fID--tE~~l~p~r~~-~l~~~~~d~l~v---~~~~~ 123 (279)
T COG0468 52 ALGGGLPRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFID--TEHALDPERAK-QLGVDLLDNLLV---SQPDT 123 (279)
T ss_pred HhcCCcccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEe--CCCCCCHHHHH-HHHHhhhcceeE---ecCCC
Confidence 3434435678999999999999999998876 4444555899999 88888887754 33333 222100 12333
Q ss_pred HHHHH---HHHHHHhcCCcEEEEEecCCC
Q 003399 251 YEMKK---IILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 251 ~~~~~---~~l~~~L~~kr~LlVlDdvw~ 276 (823)
.++.. ..+......+--|+|+|-|-.
T Consensus 124 ~e~q~~i~~~~~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 124 GEQQLEIAEKLARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCcc
Confidence 33333 333333333467999998854
No 266
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.19 Score=54.00 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|+++|.+|+||||++.++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 358999999999999999999976
No 267
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.22 E-value=0.073 Score=61.55 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=39.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..++|....++++.+.+..-......|-|+|..|+|||++|+.+++.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 68999999999999988764434556779999999999999999973
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.19 E-value=0.05 Score=51.95 Aligned_cols=113 Identities=9% Similarity=0.045 Sum_probs=59.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-CCCCCCCHHHHHHHHHHHhCCCCCCcccccCCH-HHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-PYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNY-EMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~ 257 (823)
-.+++|+|..|.|||||.+.+..- .......+++.. .+.. .+..+..+ ..++- ....+. +...-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~-~~~~~~~~---~~i~~------~~qLS~G~~qrl~ 92 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSF-ASPRDARR---AGIAM------VYQLSVGERQMVE 92 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCc-CCHHHHHh---cCeEE------EEecCHHHHHHHH
Confidence 358999999999999999999973 233455566542 0211 11111110 01110 000111 222334
Q ss_pred HHHHhcCCcEEEEEecCCCh---hhHHHHHhcCCC-CCCCcEEEEeeCcchh
Q 003399 258 LHEYIMTKRYLIVIDDVWTI---RMWDVIREILPD-NQNGSRVLITLTDIEM 305 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~---~~~~~l~~~~~~-~~~gs~IivTTR~~~v 305 (823)
+-..+-.+.-++++|+--.. ...+.+...+.. ...|..||++|.+...
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 44555566778888987543 222333333221 1236678888887653
No 269
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.17 E-value=0.048 Score=50.45 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=67.5
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHH
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEY 261 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 261 (823)
-+.|+|-||+||+++.+..|.- -..+.+...+||+ .-. +++ ..+.++...++
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvd--fle----rqi------------------~v~~Edvr~ml--- 73 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVD--FLE----RQI------------------KVLIEDVRSML--- 73 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchh--hhh----HHH------------------HhhHHHHHHHH---
Confidence 3568999999999999999972 2245566788887 211 111 01111121211
Q ss_pred hcCCcEEEEEecCCCh---hhHHHHHhcCCCCCCCcEEEEeeCcchhhhcccccCCCCCCCChhhhHHhHHHHcCCccee
Q 003399 262 IMTKRYLIVIDDVWTI---RMWDVIREILPDNQNGSRVLITLTDIEMVTSFQLEDGENIRLDLVPTGGPLRATYKGWPFF 338 (823)
Q Consensus 262 L~~kr~LlVlDdvw~~---~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~f~~~~~~~~~~~~~~~~i~~~c~GlPLa 338 (823)
|+. +..+.|..+.-.+...|..+..|.+.. ......+.-++|.+.|+..|..
T Consensus 74 -------------WdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~------------SFea~~~w~~kv~~e~~~IPtV 128 (246)
T KOG4252|consen 74 -------------WDTAGQEEFDAITKAYYRGAQASVLVFSTTDRY------------SFEATLEWYNKVQKETERIPTV 128 (246)
T ss_pred -------------HHhccchhHHHHHHHHhccccceEEEEecccHH------------HHHHHHHHHHHHHHHhccCCeE
Confidence 222 456777777666777776666665542 2233456778999999999998
Q ss_pred eee
Q 003399 339 ILY 341 (823)
Q Consensus 339 i~~ 341 (823)
++.
T Consensus 129 ~vq 131 (246)
T KOG4252|consen 129 FVQ 131 (246)
T ss_pred Eee
Confidence 875
No 270
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.16 E-value=0.014 Score=52.97 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=19.0
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 003399 183 VVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~ 202 (823)
|+|.|..|+||||+|+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 271
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.14 E-value=0.012 Score=59.17 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=41.5
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhCCcccccC
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY 209 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 209 (823)
.++||.++-++++.=++... +..+--|-++|++|.||||||.-+.+ +....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn 79 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVN 79 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCC
Confidence 57999999888887777653 34578899999999999999999999 54433
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.13 E-value=0.11 Score=55.03 Aligned_cols=104 Identities=14% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccc----cCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC-
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVK----HYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL- 243 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~- 243 (823)
+-++|..+=..-+++-|+|.+|+|||+|+.+++-..... ..=..++||+ ....|+..++.+ ++++++...+.
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId--tE~~f~~eRi~~-~a~~~g~d~~~~ 161 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID--TEGTFRPDRIRA-IAERFGVDPDAV 161 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE--cCCCCCHHHHHH-HHHHcCCChHHh
Confidence 334454443456899999999999999998765321221 1124789999 888898888754 56666543210
Q ss_pred -cc---cccCCHHHHH---HHHHHHhc-CCcEEEEEecCC
Q 003399 244 -SE---IEDKNYEMKK---IILHEYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 244 -~~---~~~~~~~~~~---~~l~~~L~-~kr~LlVlDdvw 275 (823)
.. ....+.++.. ..+...+. ++--|||+|.+-
T Consensus 162 l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 162 LDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred cCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 00 1122333333 23333333 344578888874
No 273
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.10 E-value=0.065 Score=58.94 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=51.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCC-------CCCCcccccCCHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMP-------SSRLSEIEDKNYE 252 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~-------~~~~~~~~~~~~~ 252 (823)
-..++|+|..|+|||||++.+.... .....++++. --+.-++.++....+..... ..+.+........
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~li--Gergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALV--GERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeec--ccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 3579999999999999999998632 2233445543 22334555554444443311 1111100011111
Q ss_pred HHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 253 MKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 253 ~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
...-.+-+++ +++.+|+++||+-..
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHHH
Confidence 2223344444 479999999998654
No 274
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.09 E-value=0.11 Score=50.06 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++.++|++|+||||+++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 275
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.08 E-value=0.14 Score=50.49 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=71.3
Q ss_pred CCeEeccccHHHHHHHHH---cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLI---EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDII 233 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 233 (823)
..++|.|..++.+++--. .+. .-.-|-.||.-|.||+.|++++.+ ++....-..+=|+ +.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~----k~---------- 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVD----KE---------- 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEc----HH----------
Confidence 568999988888765322 222 245678999999999999999999 6666654433333 11
Q ss_pred HHHhCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCCh---hhHHHHHhcCCCC---CCCcEEEEeeCcc
Q 003399 234 IKFLMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTI---RMWDVIREILPDN---QNGSRVLITLTDI 303 (823)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~---~~~~~l~~~~~~~---~~gs~IivTTR~~ 303 (823)
+... ...|.+.|+ ..||.|..||..-+ +....++..+..+ .+...++..|.+.
T Consensus 123 ----------------dl~~-Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 ----------------DLAT-LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ----------------HHhh-HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1111 123334443 48999999999644 4667777766632 3444555555443
No 276
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.08 E-value=0.08 Score=53.57 Aligned_cols=124 Identities=11% Similarity=0.028 Sum_probs=68.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCC---CCCCCCHHHHHHHHHHHhCCCCCCcc--cccCCHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEP---YSNEYDADQIVDIIIKFLMPSSRLSE--IEDKNYEMK 254 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~---vs~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~ 254 (823)
-.++|+||..|.||||+++.+.. -.+.....+.|-... .+ .....+-..++++..+...+.-. ....+-.++
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~--L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG--LEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc--CcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 46899999999999999999997 333333333332100 11 11233445666666665332100 122233333
Q ss_pred H-HHHHHHhcCCcEEEEEecCCChh------hHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 255 K-IILHEYIMTKRYLIVIDDVWTIR------MWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 255 ~-~~l~~~L~~kr~LlVlDdvw~~~------~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
+ -.+.+.|.-+.-|+|.|.--+.- +.-.+...+. ...|-..+..|-+-.|+.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhh
Confidence 3 34566777899999999876542 2222222222 223556677777766655
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.08 E-value=0.079 Score=55.51 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=26.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccC--cceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHY--FDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~ 217 (823)
.++|+|+|.+|+||||++..+.. ..... -..+..|+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~--~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA--RFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHHcCCCeEEEEE
Confidence 57999999999999999999876 33322 12455666
No 278
>PTZ00301 uridine kinase; Provisional
Probab=95.08 E-value=0.019 Score=57.02 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|||.|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999998876
No 279
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.07 E-value=0.11 Score=54.12 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=28.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
..++|.++|.+|+||||.+..+.. .....-..+.+++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEe
Confidence 478999999999999999988876 3433333566666
No 280
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.06 E-value=0.068 Score=57.32 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=36.2
Q ss_pred eEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 159 TVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
++|....++++.+.+..-...-.-|-|.|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 468888888888877665444566889999999999999999863
No 281
>PRK06547 hypothetical protein; Provisional
Probab=95.04 E-value=0.026 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|..|+||||+|+.+.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999987
No 282
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.03 E-value=0.074 Score=63.52 Aligned_cols=23 Identities=17% Similarity=-0.127 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++.|.|..|.||||+.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 57999999999999999999865
No 283
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.01 E-value=0.045 Score=57.92 Aligned_cols=31 Identities=10% Similarity=-0.058 Sum_probs=25.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
..++.++|||.+|.|||.+|+++++ +..-.|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCCe
Confidence 3578999999999999999999999 444333
No 284
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.01 E-value=0.11 Score=62.59 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=35.8
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|.+..++.+.+.+.. +-...+-|.++|.+|.|||++|+++++
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5678888888888776642 112345588899999999999999998
No 285
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.99 E-value=0.04 Score=53.66 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=36.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||-++.++.+.-+-.+++ ..-+-|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 579999999988877766655 78889999999999998777765
No 286
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.011 Score=35.11 Aligned_cols=17 Identities=53% Similarity=0.749 Sum_probs=8.5
Q ss_pred cceeeccCCCCcccchh
Q 003399 545 LRYLKLNIPSLKSLPSS 561 (823)
Q Consensus 545 Lr~L~L~~~~i~~lp~~ 561 (823)
|++|+|++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44555555555555444
No 287
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.98 E-value=0.058 Score=52.58 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 288
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.13 Score=55.19 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=32.8
Q ss_pred CeEe-ccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 158 DTVG-LDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 158 ~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++| -+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4666 5556677777776543 456778999999999999988865
No 289
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.039 Score=62.15 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=48.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC--CHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY--DADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
..-|-|.|..|+|||+||+++++... +++.-.+.+|+ .|.-. ....+++. +...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~--Cs~l~~~~~e~iQk~---------------------l~~v 486 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVS--CSTLDGSSLEKIQKF---------------------LNNV 486 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEe--chhccchhHHHHHHH---------------------HHHH
Confidence 45688999999999999999999433 45555666666 54421 12233222 2233
Q ss_pred HHHHhcCCcEEEEEecCCC
Q 003399 258 LHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~ 276 (823)
..+.+...+-+|||||++-
T Consensus 487 fse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 487 FSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred HHHHHhhCCcEEEEcchhh
Confidence 4455567889999999953
No 290
>PRK04040 adenylate kinase; Provisional
Probab=94.94 E-value=0.065 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 291
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.89 E-value=0.077 Score=51.20 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 292
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.17 Score=51.12 Aligned_cols=125 Identities=14% Similarity=0.197 Sum_probs=72.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCCc-----ccc------cCc---ceeEEEeC--CCCCCC--CH----------------
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSS-----YVK------HYF---DCHAWISE--PYSNEY--DA---------------- 226 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~-----~~~------~~F---~~~~wv~~--~vs~~~--~~---------------- 226 (823)
.+++|+|+.|.|||||.+.+..-. ++. ..+ ..+.||.. .+...| .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 699999999999999999998721 111 001 24556542 011111 01
Q ss_pred ------HHHHHHHHHHhCCCCCC-cccccCCHHHHH-HHHHHHhcCCcEEEEEecCCC------hhhHHHHHhcCCCCCC
Q 003399 227 ------DQIVDIIIKFLMPSSRL-SEIEDKNYEMKK-IILHEYIMTKRYLIVIDDVWT------IRMWDVIREILPDNQN 292 (823)
Q Consensus 227 ------~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVlDdvw~------~~~~~~l~~~~~~~~~ 292 (823)
++...+.+++.+...-. ..+...+-.+.+ ..+-+.|..+.=|+|||.=-. .....++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 24445556665553210 012333333433 456677888899999997432 23444555555443
Q ss_pred CcEEEEeeCcchhhh
Q 003399 293 GSRVLITLTDIEMVT 307 (823)
Q Consensus 293 gs~IivTTR~~~v~~ 307 (823)
|.-|+++|-+-+...
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 889999999977665
No 293
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.86 E-value=0.095 Score=55.95 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc----CcceeEEEeCCCCCCCCHHHHHHHHHHHhC
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWISEPYSNEYDADQIVDIIIKFLM 238 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 238 (823)
+-.+|..+=..-.++-|+|.+|+||||++.+++-...... .=..++||+ ....|+..++. ++++.++
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~--te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID--TENTFRPERIM-QMAEARG 154 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE--CCCCCCHHHHH-HHHHHcC
Confidence 3344444434578999999999999999988865322211 112799999 88888877754 3444444
No 294
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.86 E-value=0.021 Score=57.06 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999997
No 295
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.86 E-value=0.12 Score=48.14 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999873
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.85 E-value=0.16 Score=54.45 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=59.8
Q ss_pred HHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccc----cCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC--c
Q 003399 171 DLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVK----HYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL--S 244 (823)
Q Consensus 171 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~--~ 244 (823)
++|..+=..-+++-|+|.+|+|||+|+..++-..... ..-..++||+ ....|+..++.+ +++.++.+.+. .
T Consensus 117 ~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId--TE~tF~peRl~~-ia~~~g~d~~~~l~ 193 (344)
T PLN03187 117 ELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID--TEGTFRPDRIVP-IAERFGMDADAVLD 193 (344)
T ss_pred hhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE--cCCCCCHHHHHH-HHHHcCCChhhhcC
Confidence 3444443456889999999999999998875321221 1124789999 888899888654 56666543210 0
Q ss_pred c---cccCCHHHHHHH---HHHHhc-CCcEEEEEecCC
Q 003399 245 E---IEDKNYEMKKII---LHEYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 245 ~---~~~~~~~~~~~~---l~~~L~-~kr~LlVlDdvw 275 (823)
. ....+.++.... +...+. .+--|||+|.+-
T Consensus 194 ~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 194 NIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 0 122344433332 222332 234478888774
No 297
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.83 E-value=0.14 Score=54.48 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc----CcceeEEEeCCCCCCCCHHHHHHHHHHHhCC
Q 003399 167 EELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWISEPYSNEYDADQIVDIIIKFLMP 239 (823)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 239 (823)
+.+-++|..+=..-.++.|+|.+|+|||||+..++....... .-..++|++ ....|+..++ .++++.++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId--tE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID--TEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE--CCCCCCHHHH-HHHHHHcCC
Confidence 334445555544578999999999999999998764212211 123679999 7777777764 345555443
No 298
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.83 E-value=0.023 Score=56.77 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.-.+|+|+|.+|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 299
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.78 E-value=0.12 Score=56.05 Aligned_cols=99 Identities=21% Similarity=0.135 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcc-
Q 003399 167 EELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSE- 245 (823)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~- 245 (823)
.++-+.|..+=..-.++.|.|.+|+|||||+.++.. .....-..++|++ ..+. ..++. .-++.++...+...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs--~EEs--~~qi~-~Ra~rlg~~~~~l~l 141 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVS--GEES--PEQIK-LRADRLGISTENLYL 141 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--CCcC--HHHHH-HHHHHcCCCcccEEE
Confidence 444455544433457999999999999999999886 3444445678887 4433 33332 22344543221000
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEecCC
Q 003399 246 IEDKNYEMKKIILHEYIMTKRYLIVIDDVW 275 (823)
Q Consensus 246 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw 275 (823)
....+.+.+...+. ..+.-+||+|.+.
T Consensus 142 ~~e~~le~I~~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 142 LAETNLEDILASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred EccCcHHHHHHHHH---hcCCcEEEEcchH
Confidence 12233444444432 2356678888874
No 300
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.018 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=22.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.+|+|-||-|+||||||+++.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999983
No 301
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.75 E-value=0.011 Score=35.13 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=11.1
Q ss_pred CccEEeCCCCcccccchhhc
Q 003399 568 NLYTLDMPFSYIDHTADEFW 587 (823)
Q Consensus 568 ~L~~L~L~~~~l~~lp~~i~ 587 (823)
+|++|||++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35556666665555555444
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.098 Score=50.37 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999987
No 303
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.1 Score=49.50 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=59.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-CCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-PYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
.+++|+|..|.|||||++.+... . ......+++.. ++.. ....+.. ..+.-.. +-..-+...-.+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~-~~~~~~~----~~i~~~~-----qlS~G~~~r~~l~ 92 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAK-LPLEELR----RRIGYVP-----QLSGGQRQRVALA 92 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEccc-CCHHHHH----hceEEEe-----eCCHHHHHHHHHH
Confidence 68999999999999999999973 2 23455566551 0111 1111111 1111100 0011122233345
Q ss_pred HHhcCCcEEEEEecCCCh---hhHHHHHhcCCC-CCCCcEEEEeeCcchhhh
Q 003399 260 EYIMTKRYLIVIDDVWTI---RMWDVIREILPD-NQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 260 ~~L~~kr~LlVlDdvw~~---~~~~~l~~~~~~-~~~gs~IivTTR~~~v~~ 307 (823)
..+....-++++|+.-.. .....+...+.. ...|..|+++|.+.....
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 555566788899998543 222333322221 112567888887765543
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.71 E-value=0.18 Score=55.79 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=50.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC--HHHHHHHHHHHhCCCCCCcccccCCHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD--ADQIVDIIIKFLMPSSRLSEIEDKNYEMKKI 256 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 256 (823)
...+|.++|..|+||||.|..++. ..+..-..++-|+ .. .+. ..+-++.+..+++...... ....+......
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~--~D-~~R~aa~eQL~~la~~~gvp~~~~-~~~~d~~~i~~ 167 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVA--AD-TYRPAAYDQLKQLAEKIGVPFYGD-PDNKDAVEIAK 167 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEec--CC-CCCHHHHHHHHHHHHHcCCcEEec-CCccCHHHHHH
Confidence 478999999999999999999987 4443322444454 32 222 2344555666655421100 01223333333
Q ss_pred HHHHHhcCCcEEEEEecCC
Q 003399 257 ILHEYIMTKRYLIVIDDVW 275 (823)
Q Consensus 257 ~l~~~L~~kr~LlVlDdvw 275 (823)
...+.+.+. -+||+|..-
T Consensus 168 ~al~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 168 EGLEKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHHHHhhcC-CEEEEECCC
Confidence 333444444 578889873
No 305
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.70 E-value=0.096 Score=53.67 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=60.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCCccc--ccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCCC--------CcccccC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYV--KHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSSR--------LSEIEDK 249 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~~--------~~~~~~~ 249 (823)
..++|.|-.|+|||||+..+.+...+ +.+-+.++++- +.+.. ++.++..++...=..... .+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~--IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA--MGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE--eccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 56799999999999999998875331 22346788888 88765 455666665553221110 0000001
Q ss_pred CHHHHHHHHHHHhc---CCcEEEEEecCCCh-hhHHHHH
Q 003399 250 NYEMKKIILHEYIM---TKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 250 ~~~~~~~~l~~~L~---~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
-.......+-++++ ++++|+++||+-.. ....++.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEis 186 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREIS 186 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHHH
Confidence 11112334455553 68999999999654 3444444
No 306
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=0.12 Score=54.89 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=37.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+.+..+. -....-++|..|+||+++|..+.+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999987753 247889999999999999877654
No 307
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.68 E-value=0.1 Score=52.53 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|||.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 308
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.66 E-value=0.098 Score=57.29 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=56.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC-HHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD-ADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+.+. .. .+.++.+- +.+... +.++.++++..-.... +.+......
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~l--IGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGL--VGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEE--EcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 467999999999999999999873 22 24566666 766653 4455555443321111 000000001
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh-hhHHHHH
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
....+..+-+++ +++++|+++||+-.. ..+.++.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIs 272 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIA 272 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHH
Confidence 111223344555 579999999999654 3444443
No 309
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.65 E-value=0.089 Score=54.45 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=49.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCC---CCcccccCCHHHH
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSS---RLSEIEDKNYEMK 254 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~ 254 (823)
.+..+|.|.|..|.|||||+..+.+ ..+... .++.+.++.....|... +...+... .....-..+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~-~~~VI~gD~~t~~Da~r-----I~~~g~pvvqi~tG~~Chl~a~mv 173 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSV-PCAVIEGDQQTVNDAAR-----IRATGTPAIQVNTGKGCHLDAQMI 173 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCC-CEEEECCCcCcHHHHHH-----HHhcCCcEEEecCCCCCcCcHHHH
Confidence 4689999999999999999999988 444444 33333321222222222 23222210 0000112233444
Q ss_pred HHHHHHHhcCCcEEEEEecCCC
Q 003399 255 KIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 255 ~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
...+...-....-++|+++|-+
T Consensus 174 ~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 174 ADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHHHhhcCCcEEEEECCCC
Confidence 4555554444556778898854
No 310
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.64 E-value=0.023 Score=45.31 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 311
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.64 E-value=0.086 Score=57.94 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=52.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC-HHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD-ADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+.+. .. -+.++++- +.+... +.++..+.+..-+... +.+......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~--~~--~d~~v~~~--iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARN--AD--ADVSVIGL--IGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--cC--CCEEEEEE--EecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 467899999999999999999973 22 23455566 665543 3344444433322111 100000001
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
....+..+-+++ +++.+|+++||+-..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 112223344555 579999999999654
No 312
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.63 E-value=0.14 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.078 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45999999999999999999987
No 313
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.61 E-value=0.13 Score=51.21 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=38.3
Q ss_pred CCeEeccccHHH---HHHHHHcC----CCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEE---LLDLLIEG----PPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+++||.++.+.+ |++.|.+. +...+-|..+|.+|.|||.+|+++.|.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 578998877654 66777654 456889999999999999999999993
No 314
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.61 E-value=0.28 Score=46.76 Aligned_cols=124 Identities=15% Similarity=0.267 Sum_probs=68.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-CCC------------------CCC----------------
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-PYS------------------NEY---------------- 224 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~vs------------------~~~---------------- 224 (823)
-.++-++|..|.||||+.+.+|...+.. ...+|+.+ .++ |.|
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL 104 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL 104 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhh
Confidence 4688999999999999999999853322 23344432 011 111
Q ss_pred -----CHHHHHH---HHHHHhCCCCC---CcccccCCHHHHHHHHHHHhcCCcEEEEEec----CCChhhHHHHHhcCCC
Q 003399 225 -----DADQIVD---IIIKFLMPSSR---LSEIEDKNYEMKKIILHEYIMTKRYLIVIDD----VWTIRMWDVIREILPD 289 (823)
Q Consensus 225 -----~~~~~~~---~i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDd----vw~~~~~~~l~~~~~~ 289 (823)
...++.+ +.++..+.... .|. +-..-++....|-+.+-+++-+|+-|. ++....|+-+...-.-
T Consensus 105 ~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 105 RVIGKPPREIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hccCCCHHHHHHHHHHHHHHhccchhhhcCcc-ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 1222332 33333333221 111 112223333445666677788888885 4444456544332223
Q ss_pred CCCCcEEEEeeCcchhhh
Q 003399 290 NQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 290 ~~~gs~IivTTR~~~v~~ 307 (823)
+..|..|++.|-+.++..
T Consensus 184 nr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 184 NRLGTTVLMATHDLELVN 201 (223)
T ss_pred hhcCcEEEEEeccHHHHH
Confidence 456899999999988765
No 315
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.13 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++.++|.+|+||||++.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999886
No 316
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.59 E-value=0.3 Score=52.27 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.4
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 177 PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.-...+-+.|..|+||||+|+.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHH
Confidence 33456788999999999999988765
No 317
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.024 Score=64.21 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=64.3
Q ss_pred CCeEeccccHHHHHHHHHcC----CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG----PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDI 232 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~ 232 (823)
.+-+|.++.+++|++.|.-. .-.-.+++.||++|||||.|++.|++ .....|-. ++ ++.--|..+|-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~s--LGGvrDEAEIR-- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---IS--LGGVRDEAEIR-- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---Ee--cCccccHHHhc--
Confidence 46799999999999998642 22347999999999999999999998 66666632 23 44444444331
Q ss_pred HHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh
Q 003399 233 IIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI 277 (823)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~ 277 (823)
+.... .-..-+.-+.+.++ .-+.+.=+++||.++..
T Consensus 394 ------GHRRT--YIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm 429 (782)
T COG0466 394 ------GHRRT--YIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKM 429 (782)
T ss_pred ------ccccc--ccccCChHHHHHHH-HhCCcCCeEEeechhhc
Confidence 11000 00011122222222 22457789999999754
No 318
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.32 Score=57.14 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-+||+++|..|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999999988887
No 319
>PRK08149 ATP synthase SpaL; Validated
Probab=94.50 E-value=0.14 Score=56.29 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=52.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCC-CCCHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSN-EYDADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+.+... -+.++... +.. .-++.++..+......... +.+......
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~--Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGL--IGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEE--EeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45789999999999999999997322 22333333 433 2355566666655433211 111011111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
....+..+-+++ ++|++||++||+-..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 122233444444 479999999999654
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=94.50 E-value=0.19 Score=55.58 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998877765
No 321
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.49 E-value=0.29 Score=46.80 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 322
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.49 E-value=0.23 Score=46.55 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
||.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 323
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.48 E-value=0.83 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.++|..|+||||+|.+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999988875
No 324
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.081 Score=58.75 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=63.1
Q ss_pred CCeEeccccHHHHHHHHHcC----------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCH
Q 003399 157 RDTVGLDDRMEELLDLLIEG----------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDA 226 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~ 226 (823)
.++-|.+....++.+++..- -...+=|-++|++|.|||.||+++.+ +..-.| +. ++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~--isAp--- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LS--ISAP--- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Ee--ecch---
Confidence 67889999998888877541 12356688999999999999999999 444333 33 3322
Q ss_pred HHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 003399 227 DQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
+|++...+. +++.+.....+.-..-.+++++|+++-
T Consensus 258 -----eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 -----EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -----hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence 344444332 234344444445556899999999974
No 325
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.45 E-value=0.15 Score=51.94 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=59.6
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC------
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR------ 242 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~------ 242 (823)
+-++|..+=+.-+++.|.|.+|+||||+|.++... ..+ .=..++|++ ..+. ..++.+.+ .+++-.-.
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~--~e~~--~~~~~~~~-~~~g~~~~~~~~~g 86 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVIT--TENT--SKSYLKQM-ESVKIDISDFFLWG 86 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEE--cCCC--HHHHHHHH-HHCCCChhHHHhCC
Confidence 33444444445789999999999999999998542 222 334788888 6554 34454443 23322100
Q ss_pred -Cc---------ccccCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 003399 243 -LS---------EIEDKNYEMKKIILHEYIMT-KRYLIVIDDVW 275 (823)
Q Consensus 243 -~~---------~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw 275 (823)
.. .....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 87 ~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 87 YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 00 00123345677777777764 55589999875
No 326
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.43 E-value=0.15 Score=52.71 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=83.3
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCC-cccccCcceeEEEeCCCCCCCCH-HHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNS-SYVKHYFDCHAWISEPYSNEYDA-DQIVDI 232 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~~vs~~~~~-~~~~~~ 232 (823)
..++|-.++..++-.++... .+...-+.|+|+.|.|||+|.-.+..| .++.++| +-|. ....... +-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~--Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVR--LNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEE--ECccchhhHHHHHH
Confidence 67899999999988888653 223566788999999999998888775 2344444 3333 4443322 234566
Q ss_pred HHHHhCCCCCCcccccCCHHHHHHHHHHHhcC------CcEEEEEecCCCh------hhHHHHHhcC-CCCCCCcEEEEe
Q 003399 233 IIKFLMPSSRLSEIEDKNYEMKKIILHEYIMT------KRYLIVIDDVWTI------RMWDVIREIL-PDNQNGSRVLIT 299 (823)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVlDdvw~~------~~~~~l~~~~-~~~~~gs~IivT 299 (823)
|..|+..+-........+..+....+-+.|+. -++..|+|..+-- .-+..+...- ....|-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 66665442110001223344445555555542 3578888877542 1122222222 234567788899
Q ss_pred eCcc
Q 003399 300 LTDI 303 (823)
Q Consensus 300 TR~~ 303 (823)
||-.
T Consensus 179 trld 182 (408)
T KOG2228|consen 179 TRLD 182 (408)
T ss_pred cccc
Confidence 9863
No 327
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.41 E-value=0.074 Score=57.60 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=49.4
Q ss_pred CCeEeccccHHHHHHHHHcC------------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc---ceeEEEeCCCC
Q 003399 157 RDTVGLDDRMEELLDLLIEG------------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWISEPYS 221 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs 221 (823)
..++|.++.++.+.-.+... +...+-|.++|.+|+||||+|+.+.. .....| +..-+.. .+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e--~g 87 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTE--VG 87 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeec--CC
Confidence 47899999988887666542 11246788999999999999999988 444434 2222222 11
Q ss_pred C-CCCHHHHHHHHHHHh
Q 003399 222 N-EYDADQIVDIIIKFL 237 (823)
Q Consensus 222 ~-~~~~~~~~~~i~~~l 237 (823)
- ..+...+.+.+....
T Consensus 88 ~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 88 YVGRDVESMVRDLTDAA 104 (441)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 1 225556665555543
No 328
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.38 E-value=0.088 Score=58.36 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=58.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
=..++|+|-.|+|||||+.++.+... +.+-+.++++- +.+.. .+.++..++...-.... +.+......
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~l--iGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAG--VGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEc--CCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 35789999999999999988877322 23557888888 87665 35566665554322111 100011111
Q ss_pred HHHHHHHHHHHh---cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI---MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L---~~kr~LlVlDdvw~~ 277 (823)
....+..+-+++ +++++|+++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 222334555665 379999999999543
No 329
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.35 E-value=0.27 Score=46.04 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|.|.|.+|+||||+|+.+.+
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 467899999999999999988
No 330
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.31 E-value=1.2 Score=49.81 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.|++++|..|+||||++.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 36999999999999999999986
No 331
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.30 E-value=0.095 Score=58.98 Aligned_cols=46 Identities=24% Similarity=0.220 Sum_probs=33.3
Q ss_pred CCeEeccccHHHHHHHHHc--------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE--------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|.+..++.+.+.... +-...+-|-++|.+|.|||.+|+++.+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 5678877766666543211 112356788999999999999999998
No 332
>PRK03839 putative kinase; Provisional
Probab=94.29 E-value=0.026 Score=54.93 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.|.|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999998
No 333
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.29 E-value=0.49 Score=52.05 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+++|..|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999987765
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=94.28 E-value=0.27 Score=52.48 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=55.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCccccc-CcceeEEEeCCCCCCCCH--HHHHHHHHHHhCCCCCCcccccCCHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWISEPYSNEYDA--DQIVDIIIKFLMPSSRLSEIEDKNYEMKK 255 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 255 (823)
...+|.++|+.|+||||++.+++. ..+. .+ .++.+. ...+.. .+-++.....++..... .....+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~---~Dt~R~~a~eqL~~~a~~lgv~v~~-~~~g~dp~~v~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAA---GDTFRAGAIEQLEEHAERLGVKVIK-HKYGADPAAVA 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEec---CCcCcHHHHHHHHHHHHHcCCceec-ccCCCCHHHHH
Confidence 478999999999999998887775 3332 23 344444 333322 22344555555542110 01122332222
Q ss_pred -HHHHHHhcCCcEEEEEecCCCh----hhHHHHHhcCCCCCCCcEEEEe
Q 003399 256 -IILHEYIMTKRYLIVIDDVWTI----RMWDVIREILPDNQNGSRVLIT 299 (823)
Q Consensus 256 -~~l~~~L~~kr~LlVlDdvw~~----~~~~~l~~~~~~~~~gs~IivT 299 (823)
..+...-....=+|++|-.-.. ..++++........+.-.++|.
T Consensus 212 ~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl 260 (336)
T PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVG 260 (336)
T ss_pred HHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEee
Confidence 2222222222238888987443 2344443332222333445554
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.28 E-value=0.6 Score=50.94 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=54.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccc--cCcceeEEEeCCCCCCCCHHH--HHHHHHHHhCCCCCCcccccCCHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVK--HYFDCHAWISEPYSNEYDADQ--IVDIIIKFLMPSSRLSEIEDKNYEMK 254 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~vs~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~ 254 (823)
..++|.++|..|+||||.+..+....... .+=..+..++ . ..|.... -++..++.++.+- ....+.+++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit--~-Dt~R~aa~eQL~~~a~~lgvpv----~~~~~~~~l 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT--I-DNYRIGAKKQIQTYGDIMGIPV----KAIESFKDL 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe--c-cCccHHHHHHHHHHhhcCCcce----EeeCcHHHH
Confidence 36799999999999999998887622111 1122455555 3 3433322 2444444444321 122344555
Q ss_pred HHHHHHHhcCCcEEEEEecCCCh----hhHHHHHhcCC
Q 003399 255 KIILHEYIMTKRYLIVIDDVWTI----RMWDVIREILP 288 (823)
Q Consensus 255 ~~~l~~~L~~kr~LlVlDdvw~~----~~~~~l~~~~~ 288 (823)
...+.+. .+.-+|++|..-.. .++.++...+.
T Consensus 246 ~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 246 KEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred HHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 5545443 34568888887432 23445544443
No 336
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.0044 Score=59.07 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=44.2
Q ss_pred CccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCcc-ccccCCCCCcccEEeeecCCCCccee-ecccccccccEE
Q 003399 691 SLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRK-LTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECL 768 (823)
Q Consensus 691 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~lp~L~~L 768 (823)
.++.++-+++.+....+..+..++.++.|.+.+|.+.++. +..-.+.+|+|+.|+|++|+.+++-. ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3556666666666666666777777777777766544321 11111234555555555555544321 123345555555
Q ss_pred EeecCCC
Q 003399 769 IINPCAY 775 (823)
Q Consensus 769 ~i~~C~~ 775 (823)
.+.+-+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 5554443
No 337
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.12 Score=53.13 Aligned_cols=81 Identities=11% Similarity=0.136 Sum_probs=51.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCccc--ccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYV--KHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
-++|-++|++|.|||+|.+++++.-.+ .+.|....-+. ++.. .+++....+ ....+..+-+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE--insh--------sLFSKWFsE------SgKlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE--INSH--------SLFSKWFSE------SGKLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE--Eehh--------HHHHHHHhh------hhhHHHHHHHH
Confidence 488999999999999999999996433 34555455554 3321 222222221 22345566677
Q ss_pred HHHHhcCCc--EEEEEecCCC
Q 003399 258 LHEYIMTKR--YLIVIDDVWT 276 (823)
Q Consensus 258 l~~~L~~kr--~LlVlDdvw~ 276 (823)
|++.+.++. +++.+|.|.+
T Consensus 241 I~ELv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHH
Confidence 777777654 4566888854
No 338
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.23 E-value=0.022 Score=50.73 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHhCCcccccCcce
Q 003399 183 VVILDSIGLDKTAFAGEAYNSSYVKHYFDC 212 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 212 (823)
|-++|.+|+||||+|+.+.. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 57899999999999999998 67777754
No 339
>PTZ00035 Rad51 protein; Provisional
Probab=94.18 E-value=0.39 Score=51.62 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=59.7
Q ss_pred HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccc----cCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC
Q 003399 168 ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVK----HYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL 243 (823)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~ 243 (823)
.+-++|..+=..-.++.|+|..|+|||||+..+.-..... ..=..++|++ ....|+..++ .++++.++.....
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId--tE~~f~~eri-~~ia~~~g~~~~~ 182 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID--TEGTFRPERI-VQIAERFGLDPED 182 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE--ccCCCCHHHH-HHHHHHhCCChHh
Confidence 3444454443457899999999999999998886422211 1123567999 7777777764 4445555442110
Q ss_pred -----cccccCCHHHHHHHH---HHHhc-CCcEEEEEecCCC
Q 003399 244 -----SEIEDKNYEMKKIIL---HEYIM-TKRYLIVIDDVWT 276 (823)
Q Consensus 244 -----~~~~~~~~~~~~~~l---~~~L~-~kr~LlVlDdvw~ 276 (823)
.-....+.++....+ .+.+. .+--|||+|-+..
T Consensus 183 ~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 183 VLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 001122333333333 22332 3445888887743
No 340
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.18 E-value=0.06 Score=64.41 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=41.3
Q ss_pred CCeEeccccHHHHHHHHHcC----CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIEG----PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.+.+|.+..+++|+++|... .....++.++|.+|+||||+|+.+.. .....|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 46899999999999888641 22356899999999999999999997 444444
No 341
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.17 E-value=0.18 Score=53.13 Aligned_cols=101 Identities=17% Similarity=0.064 Sum_probs=60.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcc-cccCCHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSE-IEDKNYEMKKII 257 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~ 257 (823)
.-+++-|+|..|+||||||..+.. +....-..++||+ ....+|... ++.++.+-+.-- ..+.+.++....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID--~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFID--AEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEE--SSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEec--CcccchhhH-----HHhcCccccceEEecCCcHHHHHHH
Confidence 457999999999999999999887 5555556799999 777666543 444444221000 234455666677
Q ss_pred HHHHhcC-CcEEEEEecCCChhhHHHHHhcCC
Q 003399 258 LHEYIMT-KRYLIVIDDVWTIRMWDVIREILP 288 (823)
Q Consensus 258 l~~~L~~-kr~LlVlDdvw~~~~~~~l~~~~~ 288 (823)
+.+.++. ..-++|+|-|-....-.++...+.
T Consensus 123 ~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~ 154 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAALVPKAELEGEIG 154 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT-B-HHHHTTSTS
T ss_pred HHHHhhcccccEEEEecCcccCCHHHHhhccc
Confidence 7777764 456899999876533334444333
No 342
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.29 Score=51.26 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=75.0
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD 225 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~ 225 (823)
.++-|.++.+++|.+.+.-. =..++=|-.+|++|.|||-||++|+| +....| +. |..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Ir--vvgS-- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IR--VVGS-- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EE--eccH--
Confidence 45678899999988876532 12467788999999999999999999 555544 33 3222
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhc-CCcEEEEEecCCCh-------------h---hHHHHHhcCC
Q 003399 226 ADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM-TKRYLIVIDDVWTI-------------R---MWDVIREILP 288 (823)
Q Consensus 226 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw~~-------------~---~~~~l~~~~~ 288 (823)
++++..-++. ..+...+.+.-+ .....|.+|.++.. + ..-++...+.
T Consensus 220 ------ElVqKYiGEG----------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 220 ------ELVQKYIGEG----------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred ------HHHHHHhccc----------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 2222222211 223344444444 36788999988631 1 1223444444
Q ss_pred CCC--CCcEEEEeeCcchhhh
Q 003399 289 DNQ--NGSRVLITLTDIEMVT 307 (823)
Q Consensus 289 ~~~--~gs~IivTTR~~~v~~ 307 (823)
.+. ..-|||..|...++..
T Consensus 284 GFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 284 GFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred CCCCCCCeEEEEecCCccccC
Confidence 332 2457888887777666
No 343
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.09 E-value=0.12 Score=60.91 Aligned_cols=46 Identities=26% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCeEeccccHHHHHHHHH---cC-------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLI---EG-------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|.+...+++.+.+. .. ..-.+-|.++|.+|.||||+|+.+.+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 456777766666655443 21 01134489999999999999999988
No 344
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.06 E-value=0.079 Score=54.85 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=17.8
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..|.|.|.+|+||||+|+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4688999999999999999987
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.06 E-value=0.45 Score=52.62 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=47.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCccccc-CcceeEEEeCCCCCCCC--HHHHHHHHHHHhCCCCCCcccccCCHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWISEPYSNEYD--ADQIVDIIIKFLMPSSRLSEIEDKNYEMKK 255 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 255 (823)
...+|.++|.+|+||||.|..++. .... .-..++-|+ . ..+. ..+-++....+.+.+... .....++.+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~--~l~~~~g~kV~lV~--~-D~~R~~a~~QL~~~a~~~gvp~~~-~~~~~~P~~i~ 171 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY--YLKKKQGKKVLLVA--C-DLYRPAAIEQLKVLGQQVGVPVFA-LGKGQSPVEIA 171 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHhCCCeEEEEe--c-cccchHHHHHHHHHHHhcCCceEe-cCCCCCHHHHH
Confidence 368999999999999999888876 3321 112333444 2 2222 222233344444332110 01223454554
Q ss_pred HHHHHHhcCCcE-EEEEecCC
Q 003399 256 IILHEYIMTKRY-LIVIDDVW 275 (823)
Q Consensus 256 ~~l~~~L~~kr~-LlVlDdvw 275 (823)
....+....+.+ ++|+|-.-
T Consensus 172 ~~al~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 172 RRALEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHHHHhcCCCEEEEeCCC
Confidence 444444444445 77777764
No 346
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.04 E-value=0.12 Score=58.74 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=52.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
.-+|.-.+|.+|+||||||.-|++..- | .++=|. .|..-....+-..|...+....-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEIN--ASDeRt~~~v~~kI~~avq~~s~---------------- 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEIN--ASDERTAPMVKEKIENAVQNHSV---------------- 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEec--ccccccHHHHHHHHHHHHhhccc----------------
Confidence 568999999999999999999998422 2 355566 77777776666666665554321
Q ss_pred HHHhc--CCcEEEEEecCCCh
Q 003399 259 HEYIM--TKRYLIVIDDVWTI 277 (823)
Q Consensus 259 ~~~L~--~kr~LlVlDdvw~~ 277 (823)
+. ++..-||+|.++..
T Consensus 382 ---l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 ---LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ---cccCCCcceEEEecccCC
Confidence 21 57778999999865
No 347
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.03 E-value=0.15 Score=52.56 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 377899999999999999987
No 348
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.01 E-value=0.053 Score=49.25 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=28.2
Q ss_pred cHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 165 RMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+.+++-+.|...-..-.+|.+.|.-|.||||+++.+.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455555433223458999999999999999999874
No 349
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.01 E-value=0.11 Score=49.72 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=33.9
Q ss_pred eEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 159 TVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 159 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+||.+..+.++++.+..-.....-|-|+|..|.||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888888764333455669999999999999999983
No 350
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.00 E-value=0.042 Score=54.94 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++.|.|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 351
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.98 E-value=0.04 Score=53.99 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+..+|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 352
>PRK00625 shikimate kinase; Provisional
Probab=93.96 E-value=0.033 Score=53.54 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.++||.|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 353
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.94 E-value=0.18 Score=57.84 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=37.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|....+.++++.+..-...-.-|-|+|..|.||+++|+++++
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 5899999988888887754322234578999999999999999986
No 354
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.91 E-value=0.045 Score=60.47 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++||++.++.+...+..+. -|-|.|.+|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 579999999999998887754 578999999999999999997
No 355
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.86 E-value=0.31 Score=49.68 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHH
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDI 232 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~ 232 (823)
+-++|..+=+.-+++.|.|.+|.|||++|.++.. ..-..-+.++||+ ... +..++.+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs--~ee--~~~~i~~~ 67 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVA--LEE--HPVQVRRN 67 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEE--eeC--CHHHHHHH
Confidence 3344544434578999999999999999987654 2223345788887 544 34444444
No 356
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.84 E-value=0.12 Score=57.02 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=55.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
=..++|.|-.|+|||||+.++...... ++=+.++++- +.+.. .+.++.+++...=.... +.+......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~l--iGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAG--VGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEE--eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999999987652111 1113567777 76665 45566666655322111 100000111
Q ss_pred HHHHHHHHHHHh---cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI---MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L---~~kr~LlVlDdvw~~ 277 (823)
.....-.+-+++ +++++||++||+-..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 112234455666 679999999999653
No 357
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.83 E-value=0.056 Score=50.51 Aligned_cols=36 Identities=14% Similarity=-0.128 Sum_probs=28.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
..||=|.|.+|.||||||+++.+ +....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 35888999999999999999998 6666666677776
No 358
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.78 E-value=0.037 Score=54.80 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|+|.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 359
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.75 E-value=0.59 Score=48.80 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=37.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccC-cceeEEEeCCCCCCCCHHHHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWISEPYSNEYDADQIVDIIIKFLMP 239 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 239 (823)
-.++.|.|.+|+||||++.++.. ..... =..++|++ ... +..++...+...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS--~E~--~~~~~~~r~~~~~~~ 84 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTIS--LEE--PVVRTARRLLGQYAG 84 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEE--ccc--CHHHHHHHHHHHHhC
Confidence 45888999999999999998876 33222 24678887 554 345666666655433
No 360
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.74 E-value=0.28 Score=51.95 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=50.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCC-CCCHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSN-EYDADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|.|||||.+.+.+. ... +..+..- +.. .-++.++.......-.... +.+......
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~--iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIAL--IGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEE--EecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 357899999999999999999973 222 2233333 332 2345555555544322111 100001111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
.......+-+++ ++|.+|+++||+-..
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 122233344444 579999999998654
No 361
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.73 E-value=0.086 Score=52.44 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=51.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCCCCcccccC--CH------
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSSRLSEIEDK--NY------ 251 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~--~~------ 251 (823)
.-++|+|..|+|||+|+..+.+. .. =+.++++. +++.. .+.++.+++...-..+...--.... ..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~--~~--~d~~V~~~--iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANN--QD--ADVVVYAL--IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--CT--TTEEEEEE--ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhc--cc--ccceeeee--ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 46899999999999999999873 22 23347777 77654 4555655553321111000000001 11
Q ss_pred HHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 252 EMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 252 ~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
....-.+-+++ ++|.+|+++||+-..
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhHHH
Confidence 11112223333 689999999999543
No 362
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.73 E-value=0.072 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.++||+|..|.|||||++.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 363
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.72 E-value=0.44 Score=46.48 Aligned_cols=125 Identities=8% Similarity=0.116 Sum_probs=66.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC-C----------------CCCCCC-----------------
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE-P----------------YSNEYD----------------- 225 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-~----------------vs~~~~----------------- 225 (823)
-.|+.|+|..|.|||||.+.+..= ...=...+|+.. . |-|.|+
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 459999999999999999999863 222234555542 0 112221
Q ss_pred --------HHHHHHHHHHHhCCCCCCcc-ccc-CCHHHHHHHHHHHhcCCcEEEEEecCCCh---hhHHHHHhcCC-CCC
Q 003399 226 --------ADQIVDIIIKFLMPSSRLSE-IED-KNYEMKKIILHEYIMTKRYLIVIDDVWTI---RMWDVIREILP-DNQ 291 (823)
Q Consensus 226 --------~~~~~~~i~~~l~~~~~~~~-~~~-~~~~~~~~~l~~~L~~kr~LlVlDdvw~~---~~~~~l~~~~~-~~~ 291 (823)
.++...++++..+..+.... ... ..-++..-.|-+.|.-++=++.+|..-+. +-..++..... -..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 23334445555554321100 011 12233334556667777778899998764 22222221111 123
Q ss_pred CCcEEEEeeCcchhhh
Q 003399 292 NGSRVLITLTDIEMVT 307 (823)
Q Consensus 292 ~gs~IivTTR~~~v~~ 307 (823)
.|-..||.|-...-|.
T Consensus 185 eGmTMivVTHEM~FAr 200 (240)
T COG1126 185 EGMTMIIVTHEMGFAR 200 (240)
T ss_pred cCCeEEEEechhHHHH
Confidence 4666777777665554
No 364
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.69 E-value=0.035 Score=53.94 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 365
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.66 E-value=0.56 Score=50.42 Aligned_cols=100 Identities=12% Similarity=-0.047 Sum_probs=56.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-CCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-YDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
..++|.++|..|+||||++..+.. .....-..+.+|+ .... .....-++...+.++... ....+..++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~--~l~~~g~~V~lIt--aDtyR~gAveQLk~yae~lgvpv----~~~~dp~dL~~a 276 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW--QLLKQNRTVGFIT--TDTFRSGAVEQFQGYADKLDVEL----IVATSPAELEEA 276 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEe--CCccCccHHHHHHHHhhcCCCCE----EecCCHHHHHHH
Confidence 468999999999999999998876 3322223566676 4322 122333344444443321 123456666555
Q ss_pred HHHHhc-CCcEEEEEecCCC----hhhHHHHHhc
Q 003399 258 LHEYIM-TKRYLIVIDDVWT----IRMWDVIREI 286 (823)
Q Consensus 258 l~~~L~-~kr~LlVlDdvw~----~~~~~~l~~~ 286 (823)
+...-. +..=+|++|-.-. .+..+++...
T Consensus 277 l~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l 310 (407)
T PRK12726 277 VQYMTYVNCVDHILIDTVGRNYLAEESVSEISAY 310 (407)
T ss_pred HHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHH
Confidence 544321 3456788888744 2344555443
No 366
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.64 E-value=0.0037 Score=60.59 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=75.4
Q ss_pred HHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCc
Q 003399 514 KIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLR 593 (823)
Q Consensus 514 ~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 593 (823)
.-+..++...+||++.+.+..+-..+..+..|.-|+++.+.+..+|.+. +.+..+..+++..|+.+..|.+.++++.++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 3456678888999999988888888888889999999999999999988 888889999998888999999999999999
Q ss_pred eeeccCccc
Q 003399 594 HLNFGSITL 602 (823)
Q Consensus 594 ~L~l~~~~~ 602 (823)
++++.++.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 998877754
No 367
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.12 Score=51.23 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++-|=.+.++++.+..... -+..+=|..+|.+|.|||-+|++|.| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 34556677777776655331 12466788999999999999999999 655555
No 368
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.63 E-value=0.079 Score=59.72 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=27.3
Q ss_pred HHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 170 LDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 170 ~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+.+....+.+.+|+|.|..|.||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 444444555689999999999999999999987
No 369
>PRK05922 type III secretion system ATPase; Validated
Probab=93.62 E-value=0.27 Score=54.09 Aligned_cols=92 Identities=10% Similarity=0.097 Sum_probs=49.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-CCHHHHHHHHHHHhCCCCCCcccccCC--------
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-YDADQIVDIIIKFLMPSSRLSEIEDKN-------- 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~-------- 250 (823)
-..++|+|..|+|||||.+.+.+. .. -+....+- +++. -.+.+.+.+...........--....+
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~--~~--~d~gvi~l--iGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKG--SK--STINVIAL--IGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhcc--CC--CCceEEEE--eCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 356899999999999999999973 22 23333333 3332 223444444443332221100000111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
....+..+-+++ +++++|+++||+-..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112233445555 479999999999654
No 370
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.59 E-value=0.1 Score=56.59 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=37.3
Q ss_pred CCeEeccccHHHHHHHHHcC------------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG------------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.++.++.+..++... +....-|.++|+.|+||||||+.+..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999988887541 11246789999999999999999987
No 371
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.54 E-value=0.21 Score=51.71 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=58.9
Q ss_pred EeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCC
Q 003399 160 VGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMP 239 (823)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 239 (823)
.|...+..+.+..+.... -.+|.|.|..|.||||+++++.+ .+...-..++.+.| ..++....+ .++.
T Consensus 62 lg~~~~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEd--p~E~~~~~~-----~q~~- 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVED--PVEYQIPGI-----NQVQ- 129 (264)
T ss_pred cCCCHHHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECC--CceecCCCc-----eEEE-
Confidence 454444433333333333 45899999999999999998876 33322123444542 222211110 0111
Q ss_pred CCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChhhHHHH
Q 003399 240 SSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIRMWDVI 283 (823)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~~~~l 283 (823)
............++..|+...=.|+++++.+.+....+
T Consensus 130 ------v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 130 ------VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred ------eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 01111123566677788888889999999998754433
No 372
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.066 Score=62.45 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=34.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.++||+++++++++.|.....+-. ..+|.+|||||++|.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH
Confidence 5799999999999999987643222 3479999999998765554
No 373
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.53 E-value=0.12 Score=56.83 Aligned_cols=102 Identities=9% Similarity=0.115 Sum_probs=60.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC-HHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD-ADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
=.-++|.|-.|+|||+|+.++.+... +.+-+.++++- +.+... +.++.+++...=.... +.+......
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~--iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCG--IGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEE--eccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 35789999999999999999876422 23346888888 877663 4556555554321111 100001111
Q ss_pred HHHHHHHHHHHhc---CCcEEEEEecCCCh-hhHHHHH
Q 003399 251 YEMKKIILHEYIM---TKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 251 ~~~~~~~l~~~L~---~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
....+..+-++++ ++++|+++||+-.. ..+.++.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REis 252 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVS 252 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHHHHHHHHHH
Confidence 1223345556654 59999999999654 3344443
No 374
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.49 E-value=0.053 Score=52.60 Aligned_cols=21 Identities=43% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 375
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.48 E-value=0.16 Score=55.84 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=49.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCC-CCCHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSN-EYDADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+... .+. ...++ +. +.+ .-.+.++.++.+..-+... +.+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~--~~~-~~gvi-~~--iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARN--TDA-DVVVI-AL--VGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCC--CCC-CEEEE-EE--EeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 357999999999999999999973 222 22222 22 233 2234445444433322111 000000000
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
....+..+-+++ +++.+||++||+-..
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 111233345555 579999999999654
No 376
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.47 E-value=0.19 Score=55.25 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=60.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCccccc--Ccc---------eeEEEeCCCCCCCCHHHHHHHHHHHhC-CCC------
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKH--YFD---------CHAWISEPYSNEYDADQIVDIIIKFLM-PSS------ 241 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~---------~~~wv~~~vs~~~~~~~~~~~i~~~l~-~~~------ 241 (823)
-.-++|.|-.|+|||||+.++.+..+... -.| .++++- +.+.....+.+.+.+..-+ ...
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~--IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAA--MGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEE--eeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 35789999999999999999987533100 022 567777 8887666665555555544 211
Q ss_pred --CCcccccCCHHHHHHHHHHHhc---CCcEEEEEecCCCh-hhHHHHH
Q 003399 242 --RLSEIEDKNYEMKKIILHEYIM---TKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 242 --~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
+.+..........+..+-++++ ++++|+++||+-.. ....++.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REis 267 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVS 267 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHH
Confidence 1000111111222334556665 59999999999553 3444443
No 377
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=93.44 E-value=0.39 Score=44.49 Aligned_cols=105 Identities=8% Similarity=0.091 Sum_probs=79.2
Q ss_pred chHHHHHHHHHHhhcccccccchhchhhHHHHHHHHHHHHHHHHhchhhhhhhhhhhccCccCCChhHHHHHHHHHHHhh
Q 003399 3 INFRLFFERLGRVLAGEEVTLPDAAKQPIQNLHAESEIVTSWLREFEDDISCLLMQKIGEVEIDDPDLGNIMDEINFFTY 82 (823)
Q Consensus 3 ~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~ 82 (823)
||++.+++.+...+. +.......++.-+++|..+++.|..++++.+. .. +..+..-+.-++++.+...
T Consensus 9 aalG~~~~eLlk~v~-~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~------~~-----~eld~~~~ee~e~L~~~L~ 76 (147)
T PF05659_consen 9 AALGAVFGELLKAVI-DASKKSLSFKSILKRLESTLESIIPIIKEIDK------LN-----VELDRPRQEEIERLKELLE 76 (147)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHH------Hh-----hhcCCchhHHHHHHHHHHH
Confidence 677888888888888 88888888888999999999999999999987 44 1333333778889999999
Q ss_pred hhHHHHhHhHhhhhcccCCCCcH--HHHHHHhhhHHHHHHHHHH
Q 003399 83 ESEKVIDTFINSISEQKSQSSCS--EDIFDALQGPQSRITDIKQ 124 (823)
Q Consensus 83 d~ed~ld~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~i~~ 124 (823)
++++++++|..-.. .+++ ++.+++|+++.+.+....+
T Consensus 77 ~g~~LV~k~sk~~r-----~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 77 KGKELVEKCSKVRR-----WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHhccccH-----HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 99999999843111 1111 6667777777777766544
No 378
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.44 E-value=0.12 Score=53.78 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcc
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSE 245 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~ 245 (823)
...+++.+.... +-+-++|..|+|||++++...+.- -...| ...-+. .|..-+...+++-|-..+...... .
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l-~~~~~-~~~~~~--~s~~Tts~~~q~~ie~~l~k~~~~-~ 93 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSSL-DSDKY-LVITIN--FSAQTTSNQLQKIIESKLEKRRGR-V 93 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHCS-TTCCE-EEEEEE--S-TTHHHHHHHHCCCTTECECTTE-E
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhccC-Ccccc-ceeEee--ccCCCCHHHHHHHHhhcEEcCCCC-C
Confidence 355666666543 456899999999999999987631 11222 233445 555433334333221111111100 0
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEecCCCh
Q 003399 246 IEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI 277 (823)
Q Consensus 246 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~ 277 (823)
..+ -.+|+.++.+||+.-.
T Consensus 94 ~gP-------------~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 94 YGP-------------PGGKKLVLFIDDLNMP 112 (272)
T ss_dssp EEE-------------ESSSEEEEEEETTT-S
T ss_pred CCC-------------CCCcEEEEEecccCCC
Confidence 000 1368999999999643
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.095 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 380
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.41 E-value=0.052 Score=52.76 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|+|+.|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 381
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.41 E-value=0.3 Score=50.18 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=55.9
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCCcccccCccee-EEEeCCCCCCC-CHHHHHHHHHHHhCCCCCCc--ccccCCHHH-
Q 003399 180 LSVVVILDSIGLDKTAFA-GEAYNSSYVKHYFDCH-AWISEPYSNEY-DADQIVDIIIKFLMPSSRLS--EIEDKNYEM- 253 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~vs~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~- 253 (823)
=.-++|+|-.|+|||+|| ..+.+. . .-+.+ +++- +.+.. .+.++.+++.+.-......- ....+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~--iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVA--IGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEe--cccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 357899999999999995 667652 2 23444 6666 66664 35566665554321111000 000111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEecCCCh-hhHHHHHhc
Q 003399 254 -----KKIILHEYI--MTKRYLIVIDDVWTI-RMWDVIREI 286 (823)
Q Consensus 254 -----~~~~l~~~L--~~kr~LlVlDdvw~~-~~~~~l~~~ 286 (823)
.+-.+-+++ +++.+|||+||+-.. +.+.++...
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 122333333 479999999999765 456665543
No 382
>PRK13947 shikimate kinase; Provisional
Probab=93.38 E-value=0.047 Score=52.59 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-|.|+||+|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 383
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.38 E-value=0.056 Score=53.93 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=37.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeC--------CCCCCCCHHHH--HHHHHHHhCC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISE--------PYSNEYDADQI--VDIIIKFLMP 239 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--------~vs~~~~~~~~--~~~i~~~l~~ 239 (823)
....|.++||+|.||||..|.++.+ +...+.. .+|-| +..-+.|+++. .++..++...
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~p-pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L 85 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTP-PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL 85 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH--HhhccCC-CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC
Confidence 4678889999999999999999873 3333321 22222 13445567765 3677777654
No 384
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.37 E-value=0.067 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999987
No 385
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.37 E-value=0.051 Score=52.40 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.++|++|+||||+|+.+.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999998
No 386
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.25 Score=52.70 Aligned_cols=102 Identities=24% Similarity=0.168 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC
Q 003399 164 DRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL 243 (823)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~ 243 (823)
....++-+.|..+=-.-.+|.|-|-+|||||||.-++.. +....- .+.+|+ .+-+..++ +--+++|+...+.
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVs----GEES~~Qi-klRA~RL~~~~~~ 148 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVS----GEESLQQI-KLRADRLGLPTNN 148 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEe----CCcCHHHH-HHHHHHhCCCccc
Confidence 345555555655433357999999999999999999988 555444 677776 33333332 3345566543211
Q ss_pred -cccccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 003399 244 -SEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 244 -~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
--....+.++..+.+.+ .+.-++|+|-+..
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 11234455555554444 6888999998744
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.36 E-value=0.66 Score=49.94 Aligned_cols=37 Identities=22% Similarity=0.150 Sum_probs=24.5
Q ss_pred eEEEEEEecCCchHH-HHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKT-AFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
-++|.+||+.||||| |||+..+.-.. ...=..+..|+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEE
Confidence 689999999999998 56766654111 12223455665
No 388
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.36 E-value=0.11 Score=50.85 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=52.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
-..+.|+|..|.||||+++.+.. .+... ...+-+.+ ....... ..... ++...... ............++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~--~i~~~-~~~i~ied--~~E~~~~--~~~~~-~~~~~~~~--~~~~~~~~~~~~l~ 94 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA--FIPPD-ERIITIED--TAELQLP--HPNWV-RLVTRPGN--VEGSGEVTMADLLR 94 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCCC-CCEEEECC--ccccCCC--CCCEE-EEEEecCC--CCCCCccCHHHHHH
Confidence 46899999999999999999887 33322 22333331 1111000 00000 00000000 00111223455666
Q ss_pred HHhcCCcEEEEEecCCChhhHHHHHhc
Q 003399 260 EYIMTKRYLIVIDDVWTIRMWDVIREI 286 (823)
Q Consensus 260 ~~L~~kr~LlVlDdvw~~~~~~~l~~~ 286 (823)
..++..+=.++++.+.+.+.++.+...
T Consensus 95 ~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 95 SALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred HHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 777777888999999998877755543
No 389
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.35 E-value=0.23 Score=54.63 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=50.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-CCHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-YDADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+.+. . +.+..+++. +.+. ..+.+...+....=.... +.+.....-
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~--~--~~d~~vi~~--iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNA--P--DADSNVLVL--IGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCC--C--CCCEEEEEE--ECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 458899999999999999999973 2 234455555 4443 334454444332100000 000000011
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
.......+-+++ +++++||++||+-..
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 111223344555 479999999999654
No 390
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.31 E-value=0.081 Score=52.42 Aligned_cols=118 Identities=10% Similarity=0.044 Sum_probs=59.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
.+++.|.|..|.||||+.+.+....-.. ..-++|. .. ...+ .+.+.|...+...+.... ...+...-...+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vp--a~-~~~l-~~~d~I~~~~~~~d~~~~-~~S~fs~e~~~~~ 100 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVP--AE-YATL-PIFNRLLSRLSNDDSMER-NLSTFASEMSETA 100 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcc--hh-hcCc-cChhheeEecCCccccch-hhhHHHHHHHHHH
Confidence 4789999999999999999886421111 1112222 11 1111 233344444433221100 0001111111222
Q ss_pred HHh--cCCcEEEEEecCCC---hhh----HHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 260 EYI--MTKRYLIVIDDVWT---IRM----WDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 260 ~~L--~~kr~LlVlDdvw~---~~~----~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
..+ ..++-|+++|..-. ..+ ...+...+.. .|+.+|+||-+.+++.
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAA 155 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHH
Confidence 222 35678999999743 222 1222223322 3789999999888765
No 391
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.30 E-value=0.24 Score=58.72 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=38.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+.++|....+.++.+.+..-...-.-|-|.|..|+||+++|+.+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 57999999998888877654333344789999999999999999973
No 392
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.26 E-value=0.094 Score=55.41 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=32.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVD 231 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~ 231 (823)
.+++-+.|.|||||||+|.+..- ........++=|+ +....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvS--tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVS--TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEE--eCCCCchHhhhc
Confidence 57899999999999999988554 3334444466665 555555554443
No 393
>PRK06217 hypothetical protein; Validated
Probab=93.25 E-value=0.05 Score=53.10 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=20.2
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.|.|.|++|.||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999973
No 394
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.18 E-value=0.29 Score=53.89 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=55.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC-HHHHHHHHHHHhCCCCCCc--ccccCCH-----
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD-ADQIVDIIIKFLMPSSRLS--EIEDKNY----- 251 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~~~~~--~~~~~~~----- 251 (823)
-..++|.|..|+|||||.+.+++.. . -+.++++- +.+... +.++....+..-+.....- .......
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~--~--~dv~V~~l--iGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA--E--VDVTVLAL--IGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC--C--CCEEEEEE--EccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 4689999999999999999999842 2 25677777 766643 4444433332211111000 0001111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEecCCCh-hhHHHHH
Q 003399 252 -EMKKIILHEYI--MTKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 252 -~~~~~~l~~~L--~~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
......+-+++ ++|++|+++||+-.. ....++.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REis 272 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIG 272 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHH
Confidence 11122344444 579999999999654 3334443
No 395
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.17 E-value=0.064 Score=52.14 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++|.|+|..|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999998
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.17 E-value=0.43 Score=45.41 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=18.5
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 003399 183 VVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~ 202 (823)
|.|+|..|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999987
No 397
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.15 E-value=0.065 Score=49.40 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.|+|+.|+|||||++.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 398
>PF14516 AAA_35: AAA-like domain
Probab=93.15 E-value=0.61 Score=50.18 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc-CcceeEEEeCCCCCC-----CCHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWISEPYSNE-----YDADQIV 230 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~-----~~~~~~~ 230 (823)
+..|.|...-+++.+.|... -..+.|.|.-.+|||+|...+.+ ..++ .+ .+++++ +..- .+..+.+
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~--~l~~~~~-~~v~id--~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGY-RCVYID--LQQLGSAIFSDLEQFL 82 (331)
T ss_pred CcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHH--HHHHCCC-EEEEEE--eecCCCcccCCHHHHH
Confidence 45678886777777777653 24889999999999999999987 3432 34 455666 4431 2455555
Q ss_pred HHH----HHHhCCCCCCcc-c--ccCCHHHHHHHHHHHh-c--CCcEEEEEecCCCh
Q 003399 231 DII----IKFLMPSSRLSE-I--EDKNYEMKKIILHEYI-M--TKRYLIVIDDVWTI 277 (823)
Q Consensus 231 ~~i----~~~l~~~~~~~~-~--~~~~~~~~~~~l~~~L-~--~kr~LlVlDdvw~~ 277 (823)
+.+ .+++.......+ + ...........+.+.+ . +++.+|++|+|+..
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 444 444444322111 1 1122334445555543 2 58999999999754
No 399
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.15 E-value=0.075 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.046 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|.|.|.+|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999997
No 400
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.14 E-value=0.25 Score=54.53 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=49.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-CCHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-YDADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|.|..|+|||||++.+....... ..+++.. .+. -.+.++.+.+...-.... +.+......
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~i---Ger~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALI---GERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEE---ccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 4688999999999999999998742211 1333333 332 334444444443321111 000000001
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
.......+-+++ +++.+|+++||+-..
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112223344555 479999999999654
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.13 E-value=0.11 Score=51.01 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=27.1
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccC-cceeEEEeCCCCCCCCHH
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWISEPYSNEYDAD 227 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs~~~~~~ 227 (823)
.|+|.|-||+||||+|..+... -.+.+ |+ +.=|+ ...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVD--aDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVD--ADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEe--CCCCCChH
Confidence 5899999999999999885541 22222 43 34445 44555544
No 402
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.12 E-value=0.063 Score=49.64 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=26.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccc-cCcceeEEEe
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWIS 217 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~ 217 (823)
++|.|+|..|+|||||++.+.+ +.. ..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEE
Confidence 4899999999999999999998 554 4455555555
No 403
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.11 E-value=0.6 Score=47.34 Aligned_cols=45 Identities=22% Similarity=0.126 Sum_probs=31.2
Q ss_pred HHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 171 DLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 171 ~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
++|..+=..-.++.|.|.+|.||||+|.++... ....-+.++|++
T Consensus 11 ~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is 55 (229)
T TIGR03881 11 KLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVT 55 (229)
T ss_pred HhhcCCCcCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEE
Confidence 334344334689999999999999999886542 222345778888
No 404
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.11 E-value=0.14 Score=46.44 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=39.1
Q ss_pred HHhcCCCcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCC
Q 003399 514 KIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNK 591 (823)
Q Consensus 514 ~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~ 591 (823)
..|.+++.|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..++...+.++.+|+.+.+.+ .+..++. .+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566666666666653 3444433 3455556666666653 5666555556666667776654 4444433 3445666
Q ss_pred CceeeccC
Q 003399 592 LRHLNFGS 599 (823)
Q Consensus 592 L~~L~l~~ 599 (823)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 66665543
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.09 E-value=0.052 Score=53.91 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999983
No 406
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.05 E-value=0.49 Score=46.55 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|.|..|.|||||.+.+..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 407
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.02 E-value=0.24 Score=54.47 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=49.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+.+. ... +..+..- +.+.. .+.++..+.+.+-+... +.+......
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~--~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~ 210 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIAL--IGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLK 210 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEE--EccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHH
Confidence 468999999999999999999873 222 2222223 33332 34444444333211110 100001111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
.......+-+++ +++.+|+++||+-..
T Consensus 211 ~~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 211 AAFTATAIAEYFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcCcHHH
Confidence 112233444555 479999999999654
No 408
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.02 E-value=0.15 Score=57.16 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=49.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCCccccc-CcceeE-EEeCCCCCCCC-HHHHHHHHHHHhC-CCCCCcccccCCHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKH-YFDCHA-WISEPYSNEYD-ADQIVDIIIKFLM-PSSRLSEIEDKNYEMKKI 256 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~-wv~~~vs~~~~-~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~ 256 (823)
...+|+|..|+|||||++.|.+ .+.. +-++.+ .+- |.+... +.++.+.+-..+- ...+.+.........+..
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvL--IgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVL--VDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEE--EeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998 3422 223332 333 444432 3333222200000 011111111122233444
Q ss_pred HHHHHh--cCCcEEEEEecCCCh
Q 003399 257 ILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 257 ~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
.+-+++ .++.+||++|++-..
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHH
Confidence 455555 579999999998654
No 409
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.02 E-value=0.42 Score=44.74 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 003399 183 VVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~ 203 (823)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999875
No 410
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.00 E-value=0.35 Score=57.00 Aligned_cols=99 Identities=22% Similarity=0.071 Sum_probs=63.5
Q ss_pred HHHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCc-c
Q 003399 168 ELLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLS-E 245 (823)
Q Consensus 168 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~-~ 245 (823)
.+-.+|. .+=..-+++-|+|..|+||||||.++.. .....=..++|++ ....++. ..+++++.+.+.- -
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId--~E~t~~~-----~~A~~lGvDl~~llv 117 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFID--AEHALDP-----DYAKKLGVDTDSLLV 117 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEC--CccchhH-----HHHHHcCCChhHeEE
Confidence 3444454 3434568899999999999999977654 2333335689999 7777763 3666776532110 0
Q ss_pred cccCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 003399 246 IEDKNYEMKKIILHEYIMT-KRYLIVIDDVW 275 (823)
Q Consensus 246 ~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw 275 (823)
....+.++....+.+.++. +--|||+|-+-
T Consensus 118 ~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 2234455666666666654 56689999985
No 411
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.98 E-value=0.092 Score=50.37 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=21.8
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHY 209 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 209 (823)
..|-+.|.+|+||||+|+++.+ ..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak--~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK--ELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH--HHHHh
Confidence 3567789999999999999987 45443
No 412
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.44 Score=56.63 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCeEeccccHHHHHHHHHcCC------CCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGP------PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIV 230 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~ 230 (823)
..++|.++.+..|.+.+.... .....+.+.|..|+|||-||+++.. .+-+..+..+-++ .|+ ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriD--mse------~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLD--MSE------FQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEec--hhh------hh
Confidence 358888888888888886531 1467788899999999999999887 4544445555555 333 22
Q ss_pred HHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcE-EEEEecCCChh
Q 003399 231 DIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRY-LIVIDDVWTIR 278 (823)
Q Consensus 231 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdvw~~~ 278 (823)
. +.+.++.+.. ... .+....|-+.++++.| .|+||||...+
T Consensus 632 e-vskligsp~g---yvG---~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 632 E-VSKLIGSPPG---YVG---KEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred h-hhhccCCCcc---ccc---chhHHHHHHHHhcCCceEEEEechhhcC
Confidence 2 2222233211 111 2233467788888776 66689998763
No 413
>PRK13949 shikimate kinase; Provisional
Probab=92.92 E-value=0.063 Score=51.54 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+-|.|+|+.|+||||+++.+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 414
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.90 E-value=0.39 Score=47.54 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999874
No 415
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.89 E-value=0.081 Score=55.17 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|||.|..|+||||+|+.+..
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987754
No 416
>PRK05439 pantothenate kinase; Provisional
Probab=92.87 E-value=0.13 Score=54.08 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...-+|||.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999876
No 417
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.85 E-value=0.064 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.1
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 003399 183 VVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~ 202 (823)
|-|+|.+|+|||++|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999887
No 418
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.85 E-value=0.065 Score=49.95 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|.|.|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 419
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.83 E-value=0.43 Score=53.49 Aligned_cols=99 Identities=24% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcc-
Q 003399 167 EELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSE- 245 (823)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~- 245 (823)
..+-+.|..+=..-.++.|.|.+|+|||||+.++.. .....-..++|++ ..+. ..++... ++.++...+...
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs--~Ees--~~qi~~r-a~rlg~~~~~l~~ 139 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVS--GEES--ASQIKLR-AERLGLPSDNLYL 139 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--cccc--HHHHHHH-HHHcCCChhcEEE
Confidence 444455554433457999999999999999999886 3332234678887 5443 3333222 444543211000
Q ss_pred cccCCHHHHHHHHHHHhcCCcEEEEEecCC
Q 003399 246 IEDKNYEMKKIILHEYIMTKRYLIVIDDVW 275 (823)
Q Consensus 246 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw 275 (823)
....+.+++...+.+ .+.-++|+|.+.
T Consensus 140 ~~e~~l~~i~~~i~~---~~~~lVVIDSIq 166 (446)
T PRK11823 140 LAETNLEAILATIEE---EKPDLVVIDSIQ 166 (446)
T ss_pred eCCCCHHHHHHHHHh---hCCCEEEEechh
Confidence 112334444333322 355578888763
No 420
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.83 E-value=0.2 Score=53.25 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=59.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
-..+.|+|..|.||||+++++.. .+.... .++.+.+ ..+..... .....-...... .....-.....+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~--~~~~~~-~iv~ied--~~El~~~~--~~~~~l~~~~~~----~~~~~~~~~~~l~ 212 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD--EIPKDE-RIITIED--TREIFLPH--PNYVHLFYSKGG----QGLAKVTPKDLLQ 212 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc--cCCccc-cEEEEcC--ccccCCCC--CCEEEEEecCCC----CCcCccCHHHHHH
Confidence 46899999999999999999987 332222 2333331 11111110 000000000000 0111122345566
Q ss_pred HHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhh
Q 003399 260 EYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMV 306 (823)
Q Consensus 260 ~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 306 (823)
..|+...=.||+|.+...+.++.+... ..++.| ++.|+-..+++
T Consensus 213 ~~Lr~~pd~ii~gE~r~~e~~~~l~a~-~~g~~~--~i~T~Ha~~~~ 256 (308)
T TIGR02788 213 SCLRMRPDRIILGELRGDEAFDFIRAV-NTGHPG--SITTLHAGSPE 256 (308)
T ss_pred HHhcCCCCeEEEeccCCHHHHHHHHHH-hcCCCe--EEEEEeCCCHH
Confidence 677778888999999998777654433 333322 46666554433
No 421
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.81 E-value=0.4 Score=54.58 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=38.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..++|....+.++.+.+..-...-..|-|.|.+|+|||++|+.+++.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 56899998888888877654334556889999999999999999984
No 422
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.81 E-value=0.072 Score=49.11 Aligned_cols=44 Identities=25% Similarity=0.117 Sum_probs=32.4
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPS 240 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~ 240 (823)
+|.|-|.+|.||||+|+.+.++ ..-.| +| .-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~---------vs----aG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL---------VS----AGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce---------ee----ccHHHHHHHHHcCCC
Confidence 6899999999999999999983 22222 22 235778888877763
No 423
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.77 E-value=0.09 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.7
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+...+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999987
No 424
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.77 E-value=0.38 Score=51.30 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=18.2
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 003399 183 VVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~ 202 (823)
+.+.|+.|.||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999987
No 425
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.72 E-value=0.39 Score=53.29 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=55.1
Q ss_pred EEEEEEecCCchHHHHH-HHHhCCccc-----ccCcceeEEEeCCCCCCCCHHHHHHHHHHHhC-CCCCCc--ccccCCH
Q 003399 181 SVVVILDSIGLDKTAFA-GEAYNSSYV-----KHYFDCHAWISEPYSNEYDADQIVDIIIKFLM-PSSRLS--EIEDKNY 251 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~-~~~~~~--~~~~~~~ 251 (823)
..++|.|-.|+|||||| -.+.|...+ .++-+.++++- +++......-..+.++.-+ .+...- .......
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~Vyva--IGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVS--IGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEE--eccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 56899999999999997 566664322 13445788888 8887643322333333332 111000 0000001
Q ss_pred H------HHHHHHHHHh--cCCcEEEEEecCCCh-hhHHHH
Q 003399 252 E------MKKIILHEYI--MTKRYLIVIDDVWTI-RMWDVI 283 (823)
Q Consensus 252 ~------~~~~~l~~~L--~~kr~LlVlDdvw~~-~~~~~l 283 (823)
. -....+-+++ +++.+|+|+||+-.. ..+.++
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REI 308 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQI 308 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHH
Confidence 0 0122333444 479999999999764 334444
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.71 E-value=0.097 Score=51.06 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=30.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.++|.|+|..|+|||||++++.+ .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 47899999999999999999998 6677786666665
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=92.68 E-value=0.43 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-..++|+|..|+|||||++.+.+
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 56899999999999999999987
No 428
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=92.68 E-value=0.36 Score=53.29 Aligned_cols=92 Identities=12% Similarity=0.077 Sum_probs=51.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+.+.. . .+.++... +.... ++.++...+...-.... +.+......
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~---~-~dv~V~g~--Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT---E-ADIIVVGL--IGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---C-CCEEEEEE--eCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 4579999999999999999998731 1 23444444 44333 44555544444322211 000000011
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
.......+-+++ +++++||++||+-..
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhHH
Confidence 111223344555 579999999999654
No 429
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.68 E-value=0.4 Score=53.72 Aligned_cols=101 Identities=19% Similarity=0.092 Sum_probs=54.9
Q ss_pred cHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-C
Q 003399 165 RMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-L 243 (823)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~ 243 (823)
-...+-++|..+=..-.++.|.|.+|+|||||+.++... ....=..++|++ ..+. ..++.. -++.++...+ .
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs--~EEs--~~qi~~-ra~rlg~~~~~l 151 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVS--GEES--LQQIKM-RAIRLGLPEPNL 151 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEE--CcCC--HHHHHH-HHHHcCCChHHe
Confidence 345555656555345679999999999999999998652 322223577877 4433 333222 1233332211 0
Q ss_pred cccccCCHHHHHHHHHHHhcCCcEEEEEecCC
Q 003399 244 SEIEDKNYEMKKIILHEYIMTKRYLIVIDDVW 275 (823)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw 275 (823)
.-....+.+.+...+.+ .+.-++|+|.+-
T Consensus 152 ~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 152 YVLSETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred EEcCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 00122344444443332 245578888774
No 430
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.61 E-value=0.36 Score=53.14 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=49.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCC-CCCHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSN-EYDADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|+|||||++.+.+... .+..+... +.. .-++.++..+.+..-+... +.+......
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~----~dv~vig~--IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQ----ADVVVVGL--IGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccC----CCeEEEEE--EeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 46899999999999999999987321 12222233 322 2233333333333222110 100011222
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
..+....+-+++ +++.+||++||+-..
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhHH
Confidence 233344444554 479999999998654
No 431
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.60 E-value=0.21 Score=49.74 Aligned_cols=37 Identities=24% Similarity=0.153 Sum_probs=28.1
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.++++|+++|..|+|||||..++.+ +... +..+..+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~--~~~~-~~~v~v~~ 56 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLID--NLKD-EVKIAVIE 56 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHH--HHhc-CCeEEEEE
Confidence 3699999999999999999999987 3222 23455555
No 432
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=0.024 Score=54.20 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=53.1
Q ss_pred cCCCCCcccEEeeecCCCCcceee--cccccccccEEEeecCCCCCCCc-hhccCCCCCcEEEecCCC
Q 003399 734 GSYGFPNLKVLHLKSMLWLEEWTM--GNAAMPKLECLIINPCAYLKKMP-EQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 734 ~~~~~~~L~~L~L~~~~~l~~~~~--~~~~lp~L~~L~i~~C~~l~~lp-~~l~~l~~L~~L~l~~c~ 798 (823)
.+..+++++.|.+.+|..+..|.. --+-.|+|+.|+|++|+.+++-- .++..+++|+.|.+.+.|
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 356789999999999998887743 23468999999999999998542 367889999999999887
No 433
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.60 E-value=0.086 Score=51.58 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.+|.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999873
No 434
>PRK04328 hypothetical protein; Provisional
Probab=92.58 E-value=0.42 Score=49.10 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=33.9
Q ss_pred HHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC
Q 003399 170 LDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE 223 (823)
Q Consensus 170 ~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~ 223 (823)
-++|..+=+.-.++.|.|.+|.|||+||.++... .. ..-+.++|++ ..+.
T Consensus 13 D~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~-~~-~~ge~~lyis--~ee~ 62 (249)
T PRK04328 13 DEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWN-GL-QMGEPGVYVA--LEEH 62 (249)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHH-HH-hcCCcEEEEE--eeCC
Confidence 3334444345689999999999999999886542 22 2345678888 5553
No 435
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.58 E-value=0.084 Score=51.06 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++|.+.|++|+||||+|+.+.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 436
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.57 E-value=0.12 Score=52.10 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.9
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 003399 183 VVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~ 202 (823)
|.|+|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999977
No 437
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.56 E-value=0.096 Score=52.14 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.4
Q ss_pred HcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 174 IEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 174 ~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+....+.|.|+|..|+|||||++.+.+
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 33445678999999999999999999976
No 438
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.55 E-value=0.31 Score=53.62 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=49.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|.|||||++.+.+. .+. +..+.+. +.+.. .+.++..+....=.... +.+......
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~--~~~--~~~vi~~--iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARY--TEA--DVVVVGL--IGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC--CCC--CEEEEEE--EecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 457999999999999999999873 221 2333444 44443 24444444333211111 100000001
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
....+..+-+++ +++++|+++||+-..
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 111223344444 579999999999654
No 439
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.55 E-value=0.33 Score=53.95 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=58.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcc--eeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDK 249 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~ 249 (823)
..++|.|-.|+|||||+.++.+.......+. .++++- +++.. .+.++..++...=.... +.+.....
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~--iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAA--MGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEE--ccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 5789999999999999999988543321121 566777 76654 35556555553322111 10000011
Q ss_pred CHHHHHHHHHHHhc---CCcEEEEEecCCCh-hhHHHHH
Q 003399 250 NYEMKKIILHEYIM---TKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 250 ~~~~~~~~l~~~L~---~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
...-....+-++++ ++++||++||+-.. ..+.++.
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIs 258 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREIS 258 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHH
Confidence 11122334556665 68999999999654 3444444
No 440
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.53 E-value=0.08 Score=52.69 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=21.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.+|+|+|..|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999983
No 441
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.50 E-value=0.72 Score=47.31 Aligned_cols=118 Identities=20% Similarity=0.133 Sum_probs=79.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
++|+|-..-. +++..+......-+.+.|+|+.|+|||+-++.+++. . ...|+-. .+..+....+...+...
T Consensus 72 ~~~l~tkt~r-~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~-p~~~l~~-~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 72 PDFLETKTVR-RIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------N-PNALLIE-ADPSYTALVLILIICAA 142 (297)
T ss_pred ccccccchhH-hHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------C-ccceeec-CChhhHHHHHHHHHHHH
Confidence 5677654432 233344333323348889999999999999999983 1 2334331 77888888877777777
Q ss_pred hCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCC
Q 003399 237 LMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPD 289 (823)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~ 289 (823)
..... .....+....+...+++..-+|+.|..... ..++.+......
T Consensus 143 ~~~~~------~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 143 AFGAT------DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred Hhccc------chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 76643 334566777778888888889999998765 567777665443
No 442
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.46 E-value=0.1 Score=48.32 Aligned_cols=23 Identities=35% Similarity=0.297 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988877
No 443
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.46 E-value=0.74 Score=44.83 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=21.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|.+|.||||+|+.+..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 444
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.39 E-value=0.14 Score=53.14 Aligned_cols=45 Identities=27% Similarity=0.183 Sum_probs=36.9
Q ss_pred cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC
Q 003399 175 EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE 223 (823)
Q Consensus 175 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~ 223 (823)
.+=+.-+++.|.|.+|+|||++|.++.. +.......++||+ ..+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs--~~e~ 62 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVS--TEES 62 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEE--ecCC
Confidence 3435678999999999999999988887 5666688999999 6554
No 445
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.38 E-value=0.11 Score=45.00 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=20.1
Q ss_pred eEEEEEEecCCchHHHHHHHHh
Q 003399 180 LSVVVILDSIGLDKTAFAGEAY 201 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~ 201 (823)
-..++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999986
No 446
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.36 E-value=0.43 Score=57.31 Aligned_cols=120 Identities=13% Similarity=0.040 Sum_probs=58.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
+.+++.|.|..+.||||+.+.+.--. -..+.-++|. +.... .-.++..|+..++...... ....+...-...+
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~---~maq~G~~vp--a~~~~-~i~~~~~i~~~ig~~~si~-~~lStfS~~m~~~ 398 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA---LMAKSGLPIP--ANEPS-EIPVFKEIFADIGDEQSIE-QSLSTFSGHMTNI 398 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH---HHHHhCCCcc--cCCCc-cccccceEEEecCCccchh-hchhHHHHHHHHH
Confidence 46789999999999999999885310 0111222232 22110 0111122222222211100 0001111112222
Q ss_pred HHHhc--CCcEEEEEecCCChh---hHHHH----HhcCCCCCCCcEEEEeeCcchhhh
Q 003399 259 HEYIM--TKRYLIVIDDVWTIR---MWDVI----REILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 259 ~~~L~--~kr~LlVlDdvw~~~---~~~~l----~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
...+. ..+-|+++|..-... +-..+ ...+. ..|+.+|+||...+++.
T Consensus 399 ~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~ 454 (782)
T PRK00409 399 VRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKA 454 (782)
T ss_pred HHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHH
Confidence 22222 477899999986532 22222 22222 24789999999988776
No 447
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.34 E-value=0.14 Score=51.48 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHH
Q 003399 165 RMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVD 231 (823)
Q Consensus 165 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~ 231 (823)
...++++.+........+|||.|.+|+||+||.-++...-+-+.+=-.++=|+ -|..++--.++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD--PSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD--PSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE---GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC--CCCCCCCCcccc
Confidence 45667777766555678999999999999999988876322222223455555 566665444443
No 448
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.27 E-value=0.075 Score=29.25 Aligned_cols=15 Identities=47% Similarity=0.436 Sum_probs=5.4
Q ss_pred ccceeeccCCCCccc
Q 003399 544 LLRYLKLNIPSLKSL 558 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~l 558 (823)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 449
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.27 E-value=0.096 Score=49.31 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=18.8
Q ss_pred EEEEecCCchHHHHHHHHhC
Q 003399 183 VVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~ 202 (823)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 450
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=92.26 E-value=0.38 Score=53.58 Aligned_cols=99 Identities=15% Similarity=0.035 Sum_probs=56.9
Q ss_pred eEEEEEEecCCchHHHHH-HHHhCCcccccCcce-eEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCccccc
Q 003399 180 LSVVVILDSIGLDKTAFA-GEAYNSSYVKHYFDC-HAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIED 248 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~ 248 (823)
=..++|.|-.|+|||||| ..+.+. . .-+. ++++- +++.. .+.++.+.+...=.... +.+....
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~--IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCA--IGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEE--eccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 357899999999999996 577773 2 2354 67887 87765 35555555554322211 0000000
Q ss_pred CCHHHHHHHHHHHh--cCCcEEEEEecCCCh-hhHHHHH
Q 003399 249 KNYEMKKIILHEYI--MTKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 249 ~~~~~~~~~l~~~L--~~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
.-..-....+-+++ +++.+|||+||+-.. ..+.++.
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REis 274 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELS 274 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHH
Confidence 00011122344555 579999999999664 3444443
No 451
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.22 E-value=0.52 Score=51.93 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=62.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-CCHHHHHHHHHHHhCCCC--------CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-YDADQIVDIIIKFLMPSS--------RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 250 (823)
-..++|+|..|.|||||++.+.... +. ...++.+ +.+. ..+.+.....+..-+... +.+......
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~--~~-~~gvI~~---iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNA--KA-DINVISL---VGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC--CC-CeEEEEe---CCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 4578999999999999999998742 21 1223332 3333 556666555544422211 000000111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEecCCCh-hhHHHHHhc---CCCCCCCcEEEEeeCcchhhh
Q 003399 251 YEMKKIILHEYI--MTKRYLIVIDDVWTI-RMWDVIREI---LPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 251 ~~~~~~~l~~~L--~~kr~LlVlDdvw~~-~~~~~l~~~---~~~~~~gs~IivTTR~~~v~~ 307 (823)
....+..+-+++ +++.+||++||+-.. +...++... .|.. |--..+.|....++.
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~--G~~~~~~s~l~~L~E 290 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG--GKTLLMESYMKKLLE 290 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC--CeeeeeeccchhHHH
Confidence 122233444444 479999999999664 233333322 2322 444455444444433
No 452
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.20 E-value=0.11 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 003399 183 VVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~ 203 (823)
|.|+|..|+|||||.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 453
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.19 E-value=0.091 Score=50.60 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.|+|+.|.||||+|+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34699999999999999999997
No 454
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=92.17 E-value=0.35 Score=53.29 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=50.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCH-HHHHHHHHHHhCCC--C--------CCccccc
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDA-DQIVDIIIKFLMPS--S--------RLSEIED 248 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~-~~~~~~i~~~l~~~--~--------~~~~~~~ 248 (823)
-..++|+|..|+|||||++.+... .. -+..+... +.+.... .+..+. .++.. . +.+....
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~--~~--~~v~vi~~--iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R 227 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKG--CL--APIKVVAL--IGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMR 227 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc--cC--CCEEEEEe--eCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHh
Confidence 458899999999999999999973 22 23334444 4444332 233222 22221 0 0000000
Q ss_pred CCHHHHHHHHHHHh--cCCcEEEEEecCCCh-hhHHHHH
Q 003399 249 KNYEMKKIILHEYI--MTKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 249 ~~~~~~~~~l~~~L--~~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
.-.-.....+-+++ +++++||++||+-.. ..+.++.
T Consensus 228 ~~~~~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~ 266 (434)
T PRK08472 228 KYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIG 266 (434)
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHH
Confidence 00011123344444 479999999999664 3444443
No 455
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.24 Score=56.68 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD 225 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~ 225 (823)
.++.|.+...+.+.+.+.. +-...+.+-++|++|.|||.||+++++ +....|-.+.+-.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~~-------- 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGSE-------- 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCHH--------
Confidence 3556666666666555432 113466899999999999999999999 5555553222111
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 003399 226 ADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 226 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
++... -......+........+.....|.+|.++.
T Consensus 312 -------l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 312 -------LLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred -------Hhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 11111 112223334444444457889999999964
No 456
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.14 E-value=0.11 Score=53.79 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=27.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
++|+|+|.+|+|||||+..+.. ..++.. .++-|.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC-CEEEEE
Confidence 6899999999999999999998 666655 455554
No 457
>PRK13975 thymidylate kinase; Provisional
Probab=92.12 E-value=0.098 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.059 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999998
No 458
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.11 E-value=0.34 Score=53.47 Aligned_cols=101 Identities=10% Similarity=0.156 Sum_probs=58.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccc-cCcceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDK 249 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~ 249 (823)
=..++|.|-.|+|||||+.++... .. ++=+.++++- +.+.. .+.++.+++...=.... +.+.....
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~al--IGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAG--VGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEE--ecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 357899999999999999998762 22 2223677777 76654 45566666644211111 00000001
Q ss_pred CHHHHHHHHHHHh---cCCcEEEEEecCCCh-hhHHHHH
Q 003399 250 NYEMKKIILHEYI---MTKRYLIVIDDVWTI-RMWDVIR 284 (823)
Q Consensus 250 ~~~~~~~~l~~~L---~~kr~LlVlDdvw~~-~~~~~l~ 284 (823)
.....+-.+-+++ +++++||++||+-.. ....++.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REis 257 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVS 257 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHH
Confidence 1112334555666 468999999999654 3344443
No 459
>PRK13948 shikimate kinase; Provisional
Probab=92.08 E-value=0.1 Score=50.59 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+.|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999999987
No 460
>PRK13946 shikimate kinase; Provisional
Probab=92.04 E-value=0.093 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+.|.++||.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999998
No 461
>PHA02244 ATPase-like protein
Probab=92.01 E-value=0.15 Score=54.37 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCeEeccccHH----HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRME----ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~----~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|...... .+..++..+ .-|-++|..|+|||+||+++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHH
Confidence 45666554443 344444332 2467799999999999999997
No 462
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.99 E-value=0.38 Score=52.07 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=64.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
-..|.|.|..|.||||+++.+.+ .+......+++.-+ -.-++..... ..++. ..+ . ..+.......++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~tiE-dp~E~~~~~~-~~~i~----q~e---v-g~~~~~~~~~l~ 189 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIITIE-DPIEYVHRNK-RSLIN----QRE---V-GLDTLSFANALR 189 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEEEc-CChhhhccCc-cceEE----ccc---c-CCCCcCHHHHHH
Confidence 46899999999999999999887 45544555555431 0101100000 00000 000 0 111223556677
Q ss_pred HHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 260 EYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 260 ~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
..|+...=.|++|.+.+.+.+...... ...|-.|+.|+-..+++.
T Consensus 190 ~~lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 190 AALREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred HhhccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 888888999999999988766543332 223555666655544443
No 463
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.94 E-value=0.12 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999998
No 464
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.92 E-value=0.099 Score=54.79 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.0
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.|+|+|-||+||||+|..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998877765
No 465
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.90 E-value=0.12 Score=48.43 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=18.6
Q ss_pred EEEEEecCCchHHHHHHHHh
Q 003399 182 VVVILDSIGLDKTAFAGEAY 201 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~ 201 (823)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 466
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.90 E-value=0.81 Score=50.62 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=24.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC-cccccCcc
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS-SYVKHYFD 211 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~ 211 (823)
-+-.||+|.+|.||||+.+.+|.. .-+..+|+
T Consensus 101 g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d 133 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence 357899999999999999999975 23344444
No 467
>PRK14530 adenylate kinase; Provisional
Probab=91.89 E-value=0.11 Score=52.14 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 468
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.89 E-value=0.14 Score=47.18 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.+++|+|..|.|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999999873
No 469
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.89 E-value=0.18 Score=44.93 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCeEeccccHHHHHHHHHc----C-CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----G-PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|..-..+.+++.+.+ . ....-|++..|..|+|||.+|+.+++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 4678877667777666653 2 45688999999999999998777665
No 470
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.88 E-value=0.097 Score=28.81 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=6.0
Q ss_pred CccEEeCCCCcccccc
Q 003399 568 NLYTLDMPFSYIDHTA 583 (823)
Q Consensus 568 ~L~~L~L~~~~l~~lp 583 (823)
+|++|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555544443
No 471
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.82 E-value=0.11 Score=49.06 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=24.4
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccC-cceeEE
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAW 215 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~w 215 (823)
||+|+|..|+|||||+.++.. ..+.. +...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~--~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK--ALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEE
Confidence 589999999999999999998 44433 444333
No 472
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.81 E-value=0.27 Score=48.51 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|.|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 473
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=91.79 E-value=0.41 Score=53.11 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-..++|+|..|.|||||++.+.+.
T Consensus 163 Gq~~~I~G~sG~GKStLl~~I~~~ 186 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGMIARN 186 (440)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999873
No 474
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.77 E-value=0.13 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|||.|+.|+||||.|+.+-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 475
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.76 E-value=0.12 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=21.0
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.-|.|+|.+|+|||||+.++.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56889999999999999999876
No 476
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.75 E-value=0.59 Score=49.55 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.9
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC-CHHHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY-DADQIVDIII 234 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~-~~~~~~~~i~ 234 (823)
..++|.|..|+|||+|++++.+.. +-+.++++- +.+.. .+.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~--iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVG--CGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEE--eCCChHHHHHHHHHHH
Confidence 478999999999999999999842 235788888 87765 3455555543
No 477
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.75 E-value=0.21 Score=50.70 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=26.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
-.+++|+|+.|+|||||.+.++. +-..=...++++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g---~l~p~~G~V~l~ 62 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG---LLKPKSGEVLLD 62 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc---cCCCCCCEEEEC
Confidence 46999999999999999999997 222223556665
No 478
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.70 E-value=0.25 Score=52.31 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=40.6
Q ss_pred CCeEeccccHHH---HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEE
Q 003399 157 RDTVGLDDRMEE---LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWI 216 (823)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 216 (823)
..+||..+.++. +++++..+.-.-+.|-+.|++|.|||+||..+.+ +.....+.+...
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~PF~~is 84 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDVPFVSIS 84 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS-EEEEE
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCCCeeEcc
Confidence 689998877765 5777777654467888999999999999999998 666655544433
No 479
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.68 E-value=2.1 Score=47.51 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=73.2
Q ss_pred EeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcc-----cccC----cc-----------eeEEEeCC
Q 003399 160 VGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSY-----VKHY----FD-----------CHAWISEP 219 (823)
Q Consensus 160 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~----F~-----------~~~wv~~~ 219 (823)
+|.++.- .|..-|.-+-+--..|++||..|+|||||.+.++-+.. ++.+ |. ...|..+-
T Consensus 397 F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~ 475 (614)
T KOG0927|consen 397 FGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF 475 (614)
T ss_pred cCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH
Confidence 4444444 55555554433456789999999999999999988621 1111 11 11111000
Q ss_pred CCCC---CCHHHHHHHHHHHhCCCCCCc--ccccCCHHHHHHHHHHHhc-CCcEEEEEecCCCh---hhHHHHHhcCCCC
Q 003399 220 YSNE---YDADQIVDIIIKFLMPSSRLS--EIEDKNYEMKKIILHEYIM-TKRYLIVIDDVWTI---RMWDVIREILPDN 290 (823)
Q Consensus 220 vs~~---~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw~~---~~~~~l~~~~~~~ 290 (823)
+-.. -...+..+.|+...+...+.. .+...+..+....+.-++. ...-+||||.--+. +..+.+..++...
T Consensus 476 ~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~ 555 (614)
T KOG0927|consen 476 MMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF 555 (614)
T ss_pred HHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc
Confidence 0000 123345667777776653211 1233334444445555543 56789999987654 2334444444433
Q ss_pred CCCcEEEEeeCc
Q 003399 291 QNGSRVLITLTD 302 (823)
Q Consensus 291 ~~gs~IivTTR~ 302 (823)
. |. ||++|.+
T Consensus 556 ~-Gg-vv~vSHD 565 (614)
T KOG0927|consen 556 P-GG-VVLVSHD 565 (614)
T ss_pred C-Cc-eeeeech
Confidence 2 44 5555554
No 480
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.64 E-value=0.16 Score=53.68 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=28.5
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIV 230 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~ 230 (823)
++|-+.|-||+||||+|.+..- .....=..+.-|+ .....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~--~~A~~G~rtLlvS--~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL--ALARRGKRTLLVS--TDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTTS-EEEEE--SSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH--HHhhCCCCeeEee--cCCCccHHHHh
Confidence 6788999999999999977654 2222222355555 44444444443
No 481
>PRK15453 phosphoribulokinase; Provisional
Probab=91.63 E-value=0.83 Score=47.03 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|-+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998875
No 482
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.63 E-value=0.12 Score=54.21 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=19.2
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 6899999999999998877665
No 483
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.62 E-value=0.17 Score=53.46 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=40.7
Q ss_pred CCeEeccccHHHHHHHHHcC----CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG----PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.++.++++++.+... +..-+++-++|+.|.||||||..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999998763 34679999999999999999999876
No 484
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.62 E-value=0.22 Score=53.03 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+.+.+........+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555554344588999999999999999998776
No 485
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.62 E-value=0.15 Score=45.38 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=19.6
Q ss_pred EEEEecCCchHHHHHHHHhCC
Q 003399 183 VVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 183 i~I~G~gGiGKTtLa~~v~~~ 203 (823)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 486
>PLN02348 phosphoribulokinase
Probab=91.61 E-value=0.2 Score=54.04 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.6
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 177 PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+...+|||.|.+|.||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999999999987
No 487
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=91.58 E-value=0.35 Score=47.97 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=21.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
...|+|+|.+|+|||||...+.+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999875
No 488
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.56 E-value=0.16 Score=54.40 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+||.++.+..++-.+.... ..-+.|.|..|.|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 678999999888766666533 44577999999999999999975
No 489
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=91.56 E-value=0.21 Score=52.05 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=39.6
Q ss_pred CCeEeccccHHH---HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEE---LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..+||..+.++. |++++..+.-.-+.|.|+|.+|.|||+||-.+.+.
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~e 88 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARE 88 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHH
Confidence 589998777665 67888777556789999999999999999999983
No 490
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.56 E-value=0.3 Score=56.85 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=50.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc-CcceeEEEeCCCCCCCCHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH-YFDCHAWISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~vs~~~~~~~~~~~i~~ 235 (823)
++++|.++..+.+...+.... -+.++|+.|+||||+|+.+.+ .+.. .|...+++.| ...+...+++.++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n---~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPN---PEDPNMPRIVEVPA 88 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeC---CCCCchHHHHHHHH
Confidence 578999988888777776542 455899999999999999997 4433 3455555552 22234455666666
Q ss_pred HhCC
Q 003399 236 FLMP 239 (823)
Q Consensus 236 ~l~~ 239 (823)
.++.
T Consensus 89 ~~g~ 92 (608)
T TIGR00764 89 GEGR 92 (608)
T ss_pred hhch
Confidence 6654
No 491
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.50 E-value=0.19 Score=51.44 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHH
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~ 235 (823)
-.+++..+........+|||.|.+|+||+||.-++-....-+.+=-.++=|+ -|..|+--.|+.+=++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD--PSSp~TGGsiLGDRiR 104 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD--PSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC--CCCCCCCccccccHhh
Confidence 4566666766666788999999999999999988877333333334556666 7777766666544333
No 492
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=0.46 Score=48.24 Aligned_cols=93 Identities=23% Similarity=0.250 Sum_probs=59.9
Q ss_pred CCeEeccccHHHHHHHHHc---------C-CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCH
Q 003399 157 RDTVGLDDRMEELLDLLIE---------G-PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDA 226 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~ 226 (823)
+++-|.+..++.+.+...- + ....+-|.++|++|.||+.||++|... ....| .+ ||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnSTF-----FS--vSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANSTF-----FS--VSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCce-----EE--eehH---
Confidence 4577888888888876532 1 224788999999999999999999984 32332 33 4443
Q ss_pred HHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhc-CCcEEEEEecCCC
Q 003399 227 DQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM-TKRYLIVIDDVWT 276 (823)
Q Consensus 227 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw~ 276 (823)
++++...++ .+.+...+.+.-+ +|.-.|.+|.|+.
T Consensus 201 -----DLvSKWmGE----------SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 -----DLVSKWMGE----------SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -----HHHHHHhcc----------HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 223332221 1334444444443 5889999999864
No 493
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.47 E-value=1.7 Score=43.70 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=60.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
+-.++.|+|.-|.|||+++|++..... +.=-+++.++ ........+...|+..+..+... .-..-.+.....+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~--~d~~~~v~i~---~~~~s~~~~~~ai~~~l~~~p~~--~~~~~~e~~~~~L 122 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN--EDQVAVVVID---KPTLSDATLLEAIVADLESQPKV--NVNAVLEQIDREL 122 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC--CCceEEEEec---CcchhHHHHHHHHHHHhccCccc--hhHHHHHHHHHHH
Confidence 467999999999999999995543211 1101122222 45567778889999988873210 0111233444555
Q ss_pred HHHhc-CCc-EEEEEecCCCh--hhHHHHHh
Q 003399 259 HEYIM-TKR-YLIVIDDVWTI--RMWDVIRE 285 (823)
Q Consensus 259 ~~~L~-~kr-~LlVlDdvw~~--~~~~~l~~ 285 (823)
....+ ++| +.++.||.... +..+.++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrl 153 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRL 153 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHH
Confidence 55554 577 99999998654 34454443
No 494
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.46 E-value=0.15 Score=49.76 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=22.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..++|.|+|..|+|||||++++.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999999873
No 495
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.46 E-value=0.13 Score=51.58 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998877665
No 496
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.45 E-value=0.15 Score=48.35 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-|+++|.+|+|||||+..+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 497
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.44 E-value=0.19 Score=53.30 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+++-+........+|+|.|.+|+|||||+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3344444443344689999999999999999999876
No 498
>PRK06820 type III secretion system ATPase; Validated
Probab=91.42 E-value=0.87 Score=50.31 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-..++|+|..|+|||||++.+..
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~ 185 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCA 185 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhc
Confidence 35789999999999999999987
No 499
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.41 E-value=0.52 Score=49.79 Aligned_cols=97 Identities=10% Similarity=0.167 Sum_probs=55.2
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCc-ceeE-EEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccc-cCCHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYF-DCHA-WISEPYSNEYDADQIVDIIIKFLMPSSRLSEIE-DKNYEMKKII 257 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~-wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~ 257 (823)
+.|.|.|..|.||||+++++.+ .+.... +.++ -+. . ..++. +... +.-... ..........
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri~tiE----d---~~El~------~~~~-~~v~~~~~~~~~~~~~~ 196 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRVVIIE----D---TRELQ------CAAP-NVVQLRTSDDAISMTRL 196 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceEEEEC----C---chhhc------CCCC-CEEEEEecCCCCCHHHH
Confidence 4677999999999999999987 443321 1222 222 1 11110 0000 000000 0111145677
Q ss_pred HHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCc
Q 003399 258 LHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGS 294 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs 294 (823)
++..|+...=-||+..+.+.+.|+.+.. ...++.|+
T Consensus 197 l~~aLR~~pD~iivGEiR~~ea~~~l~a-~~tGh~G~ 232 (299)
T TIGR02782 197 LKATLRLRPDRIIVGEVRGGEALDLLKA-WNTGHPGG 232 (299)
T ss_pred HHHHhcCCCCEEEEeccCCHHHHHHHHH-HHcCCCCe
Confidence 8888888888899999999887765443 33344443
No 500
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.39 E-value=0.17 Score=47.55 Aligned_cols=36 Identities=14% Similarity=0.011 Sum_probs=27.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.+|++|+|+.|+|||||..++.. +.+.+--.++-|-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~--~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR--KLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH--HHHhCCcEEEEEE
Confidence 47999999999999999999987 5554443444443
Done!