Query 003399
Match_columns 823
No_of_seqs 474 out of 4119
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 23:54:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-44 5.4E-49 415.4 17.7 284 158-458 129-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6.7E-36 2.3E-40 380.2 19.5 280 157-456 124-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 2.9E-35 9.8E-40 340.9 11.5 268 158-450 129-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.1E-31 3.6E-36 313.4 17.9 277 157-454 124-450 (591)
5 3o6n_A APL1; leucine-rich repe 99.9 5.9E-25 2E-29 242.7 22.8 290 491-798 44-350 (390)
6 3vq2_A TLR4, TOLL-like recepto 99.9 9.9E-25 3.4E-29 255.7 24.1 132 468-604 30-167 (606)
7 3oja_B Anopheles plasmodium-re 99.9 7.8E-25 2.7E-29 255.3 22.5 290 491-798 50-356 (597)
8 3rgz_A Protein brassinosteroid 99.9 4.3E-25 1.5E-29 265.1 18.6 344 470-822 294-765 (768)
9 4ecn_A Leucine-rich repeat pro 99.9 3.1E-24 1E-28 256.2 22.6 276 514-798 509-838 (876)
10 2id5_A Lingo-1, leucine rich r 99.9 1.3E-23 4.6E-28 238.4 24.9 300 486-798 26-331 (477)
11 4ecn_A Leucine-rich repeat pro 99.9 1.4E-23 5E-28 250.3 24.6 273 516-798 487-817 (876)
12 4eco_A Uncharacterized protein 99.9 7.4E-24 2.5E-28 248.5 21.4 263 520-798 305-598 (636)
13 2z63_A TOLL-like receptor 4, v 99.9 1.1E-23 3.7E-28 245.0 22.4 325 468-798 26-529 (570)
14 4fmz_A Internalin; leucine ric 99.9 3.7E-23 1.3E-27 224.5 25.0 299 470-798 44-344 (347)
15 3v47_A TOLL-like receptor 5B a 99.9 3.3E-23 1.1E-27 233.7 24.8 322 468-798 28-406 (455)
16 4eco_A Uncharacterized protein 99.9 6.2E-24 2.1E-28 249.2 18.0 273 518-798 247-577 (636)
17 1o6v_A Internalin A; bacterial 99.9 6.8E-23 2.3E-27 231.7 25.1 301 470-798 46-364 (466)
18 3rgz_A Protein brassinosteroid 99.9 1.4E-23 4.7E-28 252.0 19.9 318 470-798 200-549 (768)
19 2z7x_B TOLL-like receptor 1, v 99.9 5.8E-23 2E-27 235.9 23.6 124 469-602 20-150 (520)
20 1o6v_A Internalin A; bacterial 99.9 1.6E-22 5.5E-27 228.6 26.6 302 469-798 67-386 (466)
21 3t6q_A CD180 antigen; protein- 99.9 3.8E-23 1.3E-27 242.2 21.7 131 468-603 31-166 (606)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-22 3.4E-27 236.1 24.2 104 689-798 402-508 (562)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-22 4.1E-27 237.9 24.4 135 483-622 23-161 (606)
24 3t6q_A CD180 antigen; protein- 99.9 1.3E-22 4.5E-27 237.6 24.7 273 521-798 255-558 (606)
25 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.1E-27 218.6 24.4 279 491-798 43-322 (347)
26 3o6n_A APL1; leucine-rich repe 99.9 1.1E-22 3.9E-27 224.4 22.2 271 518-798 43-329 (390)
27 4fcg_A Uncharacterized protein 99.9 5.2E-23 1.8E-27 220.9 17.4 232 518-796 79-310 (328)
28 3v47_A TOLL-like receptor 5B a 99.9 2.5E-22 8.6E-27 226.5 23.5 302 490-798 28-382 (455)
29 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-22 9.3E-27 232.0 22.8 321 469-798 25-421 (549)
30 3oja_B Anopheles plasmodium-re 99.9 2.4E-22 8.4E-27 234.2 22.0 271 518-798 49-335 (597)
31 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-21 3.6E-26 225.4 26.1 124 473-604 3-129 (520)
32 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-22 1.1E-26 231.4 21.7 322 469-798 49-508 (549)
33 2z63_A TOLL-like receptor 4, v 99.9 2.6E-22 8.8E-27 233.3 19.9 131 488-622 24-157 (570)
34 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-21 6E-26 231.2 25.3 318 469-797 24-363 (680)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-21 9.7E-26 216.8 24.4 252 516-798 81-350 (457)
36 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-21 7.2E-26 230.5 24.4 321 470-797 49-464 (680)
37 2id5_A Lingo-1, leucine rich r 99.9 3.3E-21 1.1E-25 218.8 23.1 271 520-798 32-307 (477)
38 3j0a_A TOLL-like receptor 5; m 99.9 4.9E-21 1.7E-25 232.2 25.9 317 468-798 22-392 (844)
39 3j0a_A TOLL-like receptor 5; m 99.9 2.3E-21 7.7E-26 235.2 22.8 300 490-798 22-373 (844)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.7E-21 9.1E-26 224.1 22.3 315 473-798 34-484 (562)
41 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-21 4.4E-26 210.9 17.8 268 491-798 53-331 (332)
42 3bz5_A Internalin-J, INLJ; leu 99.9 6.5E-21 2.2E-25 213.9 21.9 269 491-798 41-329 (457)
43 1xku_A Decorin; proteoglycan, 99.9 5.8E-21 2E-25 205.6 20.5 268 491-797 51-329 (330)
44 1ogq_A PGIP-2, polygalacturona 99.9 5.2E-22 1.8E-26 211.8 11.9 248 492-798 50-302 (313)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.7E-21 5.7E-26 207.9 11.7 222 470-727 50-281 (313)
46 4g8a_A TOLL-like receptor 4; l 99.8 5.7E-20 2E-24 216.3 24.7 325 467-798 49-578 (635)
47 1xku_A Decorin; proteoglycan, 99.8 8.3E-20 2.8E-24 196.5 21.0 264 521-799 32-305 (330)
48 4fcg_A Uncharacterized protein 99.8 1.5E-20 5.2E-25 201.6 14.2 222 491-773 80-311 (328)
49 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-19 3.9E-24 195.6 19.6 262 521-798 34-305 (332)
50 1jl5_A Outer protein YOPM; leu 99.8 5.8E-19 2E-23 197.8 24.7 290 468-798 89-407 (454)
51 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 193.3 16.5 225 520-798 28-259 (306)
52 2z80_A TOLL-like receptor 2, v 99.8 1.2E-19 4.1E-24 197.2 16.4 252 520-798 52-312 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.9E-23 198.5 25.4 254 472-798 42-295 (622)
54 2z66_A Variable lymphocyte rec 99.8 2.8E-19 9.5E-24 190.2 15.7 240 477-750 13-259 (306)
55 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.6E-23 196.4 21.2 223 520-798 75-301 (452)
56 2z80_A TOLL-like receptor 2, v 99.8 2.5E-19 8.7E-24 194.6 14.0 263 482-777 42-315 (353)
57 3zyj_A Leucine-rich repeat-con 99.8 1.9E-18 6.6E-23 193.6 21.4 223 520-798 64-290 (440)
58 4g8a_A TOLL-like receptor 4; l 99.8 1.8E-18 6.2E-23 203.4 21.4 133 486-622 46-181 (635)
59 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-20 1.3E-24 197.8 6.4 247 511-777 25-276 (317)
60 3o53_A Protein LRIM1, AGAP0063 99.8 2.9E-19 9.8E-24 191.0 11.5 258 520-795 10-270 (317)
61 3zyi_A Leucine-rich repeat-con 99.8 3.4E-18 1.2E-22 192.3 20.1 239 477-726 60-302 (452)
62 1ozn_A Reticulon 4 receptor; N 99.8 8.9E-19 3.1E-23 184.2 14.1 249 519-797 31-284 (285)
63 1jl5_A Outer protein YOPM; leu 99.8 8.5E-18 2.9E-22 188.3 22.4 306 469-816 110-450 (454)
64 3zyj_A Leucine-rich repeat-con 99.8 3.9E-18 1.3E-22 191.1 19.6 241 474-726 47-291 (440)
65 3oja_A Leucine-rich immune mol 99.8 3E-19 1E-23 202.2 9.7 234 518-771 32-270 (487)
66 1z7x_W Ribonuclease inhibitor; 99.8 2E-20 7E-25 211.2 0.0 306 491-798 27-409 (461)
67 3oja_A Leucine-rich immune mol 99.8 9.6E-19 3.3E-23 198.0 13.0 242 534-793 21-268 (487)
68 3ogk_B Coronatine-insensitive 99.8 7.7E-19 2.6E-23 205.0 11.0 322 470-798 112-524 (592)
69 1ozn_A Reticulon 4 receptor; N 99.7 7.8E-18 2.7E-22 177.0 13.7 219 477-728 17-239 (285)
70 1z7x_W Ribonuclease inhibitor; 99.7 4.4E-19 1.5E-23 200.3 4.0 303 492-798 3-381 (461)
71 3g06_A SSPH2 (leucine-rich rep 99.7 8.6E-17 2.9E-21 185.8 21.6 232 520-798 40-272 (622)
72 3ogk_B Coronatine-insensitive 99.7 8.1E-18 2.8E-22 196.3 10.4 305 491-797 191-548 (592)
73 1wwl_A Monocyte differentiatio 99.7 1.5E-18 5E-23 185.0 2.6 105 689-798 200-307 (312)
74 1wwl_A Monocyte differentiatio 99.7 7.6E-18 2.6E-22 179.5 5.3 247 514-775 37-308 (312)
75 1h6u_A Internalin H; cell adhe 99.7 1.7E-16 5.8E-21 168.5 15.3 189 518-749 39-227 (308)
76 3rfs_A Internalin B, repeat mo 99.7 1.7E-16 5.7E-21 165.5 13.6 208 517-788 38-247 (272)
77 2o6q_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 161.5 17.3 80 522-603 18-98 (270)
78 1p9a_G Platelet glycoprotein I 99.7 5.4E-16 1.9E-20 163.0 16.6 200 516-750 6-206 (290)
79 2ast_B S-phase kinase-associat 99.7 5.6E-17 1.9E-21 174.8 8.8 224 522-773 49-282 (336)
80 2ast_B S-phase kinase-associat 99.7 3.6E-17 1.2E-21 176.3 7.0 243 514-784 62-314 (336)
81 2p1m_B Transport inhibitor res 99.7 1.2E-17 4.2E-22 194.8 2.7 321 471-798 106-517 (594)
82 2z62_A TOLL-like receptor 4, v 99.7 9E-16 3.1E-20 160.4 16.5 80 521-600 29-110 (276)
83 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.6E-21 167.0 9.3 200 521-778 20-220 (272)
84 2z62_A TOLL-like receptor 4, v 99.6 1.1E-15 3.9E-20 159.6 15.8 207 490-728 26-238 (276)
85 1p9a_G Platelet glycoprotein I 99.6 1E-15 3.6E-20 160.8 15.5 201 538-774 5-206 (290)
86 2o6q_A Variable lymphocyte rec 99.6 2.3E-15 8E-20 156.6 17.6 125 493-646 17-143 (270)
87 1h6u_A Internalin H; cell adhe 99.6 1E-15 3.5E-20 162.5 15.2 209 526-780 25-233 (308)
88 2ca6_A RAN GTPase-activating p 99.6 1.3E-17 4.5E-22 183.4 0.0 244 513-779 25-319 (386)
89 3qfl_A MLA10; coiled-coil, (CC 99.6 2.4E-16 8.3E-21 138.6 8.0 84 3-97 1-84 (115)
90 2p1m_B Transport inhibitor res 99.6 4E-17 1.4E-21 190.5 0.7 302 491-796 183-540 (594)
91 2ca6_A RAN GTPase-activating p 99.6 9E-17 3.1E-21 176.8 3.0 257 491-771 31-338 (386)
92 2xwt_C Thyrotropin receptor; s 99.6 2.1E-15 7.3E-20 153.9 12.4 208 532-798 23-237 (239)
93 2xwt_C Thyrotropin receptor; s 99.6 1.7E-15 6E-20 154.5 11.3 85 520-604 31-119 (239)
94 4ay9_X Follicle-stimulating ho 99.6 4.5E-15 1.5E-19 160.7 14.9 100 691-795 155-254 (350)
95 3goz_A Leucine-rich repeat-con 99.6 2.5E-15 8.5E-20 163.6 9.0 93 512-604 14-123 (362)
96 1h6t_A Internalin B; cell adhe 99.6 1.8E-14 6.3E-19 151.4 13.4 170 517-726 43-212 (291)
97 3m19_A Variable lymphocyte rec 99.5 4.3E-14 1.5E-18 145.2 15.3 176 520-726 14-191 (251)
98 3goz_A Leucine-rich repeat-con 99.5 1.9E-15 6.7E-20 164.4 3.9 81 524-604 2-94 (362)
99 4glp_A Monocyte differentiatio 99.5 1.4E-14 4.8E-19 154.0 10.5 204 518-774 89-305 (310)
100 1m9s_A Internalin B; cell inva 99.5 2.2E-14 7.7E-19 165.5 11.9 82 518-603 41-122 (605)
101 1m9s_A Internalin B; cell inva 99.5 1.7E-14 5.8E-19 166.5 10.4 189 520-727 21-210 (605)
102 4glp_A Monocyte differentiatio 99.5 1E-14 3.5E-19 155.1 7.8 104 688-798 195-305 (310)
103 1h6t_A Internalin B; cell adhe 99.5 1.2E-13 4E-18 145.3 14.6 186 522-750 26-211 (291)
104 3cvr_A Invasion plasmid antige 99.5 7.3E-14 2.5E-18 159.4 11.8 76 520-604 59-134 (571)
105 2o6s_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 134.4 13.6 180 523-764 10-190 (208)
106 3m19_A Variable lymphocyte rec 99.4 8.6E-13 3E-17 135.5 15.2 168 477-672 20-189 (251)
107 1xeu_A Internalin C; cellular 99.4 1.1E-13 3.7E-18 143.2 8.1 170 518-728 17-186 (263)
108 4ay9_X Follicle-stimulating ho 99.4 7.7E-13 2.6E-17 143.1 15.1 219 520-772 30-255 (350)
109 4ezg_A Putative uncharacterize 99.4 8.2E-13 2.8E-17 130.2 11.8 153 540-726 41-193 (197)
110 4ezg_A Putative uncharacterize 99.4 2.4E-13 8.1E-18 134.1 7.1 83 517-602 41-124 (197)
111 2o6s_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 131.1 11.3 128 491-622 27-156 (208)
112 3cvr_A Invasion plasmid antige 99.4 1.9E-12 6.4E-17 147.7 15.2 187 544-786 60-253 (571)
113 1xeu_A Internalin C; cellular 99.4 9.5E-13 3.3E-17 136.0 11.6 152 515-705 36-187 (263)
114 1dce_A Protein (RAB geranylger 99.4 2.5E-14 8.6E-19 164.0 -2.9 201 540-794 346-567 (567)
115 1dce_A Protein (RAB geranylger 99.4 1.5E-14 5E-19 166.0 -5.3 177 517-727 346-546 (567)
116 1w5s_A Origin recognition comp 99.3 1.3E-12 4.6E-17 144.7 9.5 279 157-445 22-387 (412)
117 2v9t_B SLIT homolog 2 protein 99.3 5.4E-12 1.9E-16 126.6 13.0 151 523-727 14-165 (220)
118 2xot_A Amphoterin-induced prot 99.3 1.4E-12 5E-17 141.5 9.5 174 523-726 21-201 (361)
119 4b8c_D Glucose-repressible alc 99.3 7.4E-13 2.5E-17 156.7 6.7 132 470-603 173-306 (727)
120 2v9t_B SLIT homolog 2 protein 99.3 7.3E-12 2.5E-16 125.6 12.8 132 490-647 30-163 (220)
121 3e6j_A Variable lymphocyte rec 99.3 9.2E-12 3.1E-16 125.8 13.5 138 484-647 32-170 (229)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 9.3E-12 3.2E-16 124.8 12.9 152 523-728 14-167 (220)
123 3e6j_A Variable lymphocyte rec 99.3 9.9E-12 3.4E-16 125.5 12.2 79 523-603 22-101 (229)
124 2ell_A Acidic leucine-rich nuc 99.3 5.6E-12 1.9E-16 120.7 9.3 84 518-603 22-108 (168)
125 2je0_A Acidic leucine-rich nuc 99.3 5E-12 1.7E-16 118.3 7.5 128 517-670 14-148 (149)
126 2v70_A SLIT-2, SLIT homolog 2 99.3 2.2E-11 7.5E-16 122.1 12.7 146 477-647 17-164 (220)
127 2xot_A Amphoterin-induced prot 99.2 3.5E-11 1.2E-15 130.6 11.2 124 477-604 24-150 (361)
128 1a9n_A U2A', U2A'; complex (nu 99.2 2.6E-11 8.7E-16 117.0 8.4 81 521-602 43-125 (176)
129 2je0_A Acidic leucine-rich nuc 99.2 2.1E-11 7.3E-16 114.0 6.3 109 491-604 16-127 (149)
130 2ell_A Acidic leucine-rich nuc 99.2 4.9E-11 1.7E-15 114.0 8.9 133 491-647 23-158 (168)
131 4b8c_D Glucose-repressible alc 99.1 5E-12 1.7E-16 149.6 1.2 119 527-672 208-326 (727)
132 1a9n_A U2A', U2A'; complex (nu 99.1 7.2E-11 2.5E-15 113.8 7.9 128 516-646 15-150 (176)
133 2qen_A Walker-type ATPase; unk 99.1 7.2E-11 2.5E-15 127.5 8.2 266 157-450 12-349 (350)
134 1ds9_A Outer arm dynein; leuci 99.1 8.4E-12 2.9E-16 123.0 0.3 131 512-668 40-180 (198)
135 3sb4_A Hypothetical leucine ri 99.1 4.9E-10 1.7E-14 119.8 12.5 283 491-793 24-327 (329)
136 1w8a_A SLIT protein; signaling 99.1 4.2E-10 1.4E-14 110.1 10.9 79 523-603 11-91 (192)
137 2o6r_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 107.9 11.4 109 491-603 27-137 (177)
138 2wfh_A SLIT homolog 2 protein 99.1 7.3E-10 2.5E-14 108.4 12.4 84 520-603 31-115 (193)
139 2wfh_A SLIT homolog 2 protein 99.1 9.5E-10 3.2E-14 107.6 12.6 122 523-672 13-136 (193)
140 1w8a_A SLIT protein; signaling 99.0 3.5E-10 1.2E-14 110.7 9.2 108 491-602 28-138 (192)
141 2fna_A Conserved hypothetical 99.0 4E-10 1.4E-14 121.9 7.2 263 157-449 13-356 (357)
142 2r9u_A Variable lymphocyte rec 98.9 2.4E-09 8.3E-14 102.7 10.2 84 520-603 33-118 (174)
143 2o6r_A Variable lymphocyte rec 98.9 4.8E-09 1.6E-13 101.0 12.4 84 520-603 28-113 (177)
144 3g39_A Variable lymphocyte rec 98.9 4.6E-09 1.6E-13 100.4 10.0 83 520-602 30-114 (170)
145 1ds9_A Outer arm dynein; leuci 98.9 2E-10 6.7E-15 113.1 0.1 121 522-671 25-149 (198)
146 2r9u_A Variable lymphocyte rec 98.9 8.3E-09 2.8E-13 99.0 10.7 81 522-604 14-95 (174)
147 3g39_A Variable lymphocyte rec 98.9 7.3E-09 2.5E-13 99.0 10.3 103 521-647 10-113 (170)
148 2qby_B CDC6 homolog 3, cell di 98.8 6.7E-09 2.3E-13 113.5 9.8 264 157-430 20-341 (384)
149 4fdw_A Leucine rich hypothetic 98.8 2.5E-07 8.5E-12 101.1 21.1 273 491-816 112-394 (401)
150 2v1u_A Cell division control p 98.8 1.3E-08 4.4E-13 111.3 9.9 264 157-429 19-352 (387)
151 1fnn_A CDC6P, cell division co 98.7 4.5E-08 1.5E-12 107.1 13.0 266 157-430 17-353 (389)
152 2qby_A CDC6 homolog 1, cell di 98.7 7.4E-09 2.5E-13 113.2 5.5 142 157-305 20-175 (386)
153 3sb4_A Hypothetical leucine ri 98.7 6.4E-08 2.2E-12 103.2 12.0 261 491-770 48-328 (329)
154 4fdw_A Leucine rich hypothetic 98.6 1.1E-06 3.7E-11 96.0 20.4 239 517-798 110-356 (401)
155 3un9_A NLR family member X1; l 98.6 1.3E-08 4.3E-13 110.3 2.8 112 491-602 71-195 (372)
156 2ifg_A High affinity nerve gro 98.5 1E-07 3.5E-12 102.5 8.2 88 516-603 27-116 (347)
157 2ifg_A High affinity nerve gro 98.5 2.9E-07 9.9E-12 98.9 10.5 97 524-622 12-111 (347)
158 3un9_A NLR family member X1; l 98.5 6.8E-09 2.3E-13 112.4 -2.9 135 519-671 71-220 (372)
159 2chg_A Replication factor C sm 98.5 1.4E-07 4.7E-12 94.1 6.8 123 157-304 17-143 (226)
160 4fs7_A Uncharacterized protein 98.5 3.9E-06 1.3E-10 91.7 19.0 281 491-796 70-375 (394)
161 1njg_A DNA polymerase III subu 98.4 5.6E-07 1.9E-11 91.0 9.8 137 157-304 23-167 (250)
162 2ra8_A Uncharacterized protein 98.4 2.1E-07 7.1E-12 99.9 6.0 159 632-798 135-318 (362)
163 1sxj_B Activator 1 37 kDa subu 98.2 9.6E-07 3.3E-11 93.7 5.7 123 157-304 21-148 (323)
164 3e4g_A ATP synthase subunit S, 98.2 8.6E-07 3E-11 83.5 4.7 88 691-778 62-154 (176)
165 2ra8_A Uncharacterized protein 98.2 5.5E-07 1.9E-11 96.6 3.0 37 713-749 278-317 (362)
166 4fs7_A Uncharacterized protein 98.2 4.9E-05 1.7E-09 83.0 18.3 267 512-795 63-351 (394)
167 1jbk_A CLPB protein; beta barr 98.1 3.9E-06 1.3E-10 81.3 6.7 44 157-202 22-65 (195)
168 3te6_A Regulatory protein SIR3 98.0 9.5E-06 3.2E-10 84.5 9.3 111 158-277 21-144 (318)
169 1hqc_A RUVB; extended AAA-ATPa 98.0 1.1E-06 3.7E-11 93.4 1.5 46 157-202 12-60 (324)
170 1iqp_A RFCS; clamp loader, ext 98.0 3E-06 1E-10 90.0 4.5 123 157-304 25-151 (327)
171 1io0_A Tropomodulin; LRR prote 98.0 3.9E-06 1.3E-10 81.0 4.3 117 512-647 28-162 (185)
172 1io0_A Tropomodulin; LRR prote 97.9 5E-06 1.7E-10 80.2 4.5 112 491-603 35-164 (185)
173 4gt6_A Cell surface protein; l 97.9 0.00032 1.1E-08 76.4 19.5 285 493-798 65-368 (394)
174 3e4g_A ATP synthase subunit S, 97.8 1.9E-05 6.5E-10 74.4 5.7 84 714-798 61-150 (176)
175 3ec2_A DNA replication protein 97.8 2.6E-05 8.8E-10 74.8 6.5 98 180-302 38-142 (180)
176 3h4m_A Proteasome-activating n 97.7 2.2E-05 7.6E-10 81.5 4.8 46 157-202 17-73 (285)
177 2p65_A Hypothetical protein PF 97.7 2.7E-05 9.4E-10 74.8 4.7 44 157-202 22-65 (187)
178 3n70_A Transport activator; si 97.7 4.5E-05 1.5E-09 70.2 5.7 46 158-203 2-47 (145)
179 1jr3_A DNA polymerase III subu 97.6 0.0001 3.4E-09 79.7 8.8 45 157-202 16-60 (373)
180 2w58_A DNAI, primosome compone 97.6 3.9E-05 1.3E-09 75.1 4.8 59 157-217 25-89 (202)
181 3rw6_A Nuclear RNA export fact 97.6 6.1E-05 2.1E-09 76.4 5.8 81 514-596 164-257 (267)
182 2chq_A Replication factor C sm 97.6 2.4E-05 8.1E-10 82.6 2.7 120 157-304 17-143 (319)
183 3u61_B DNA polymerase accessor 97.5 0.00013 4.3E-09 77.3 7.9 119 157-304 26-147 (324)
184 3co5_A Putative two-component 97.5 7.3E-05 2.5E-09 68.5 4.4 47 157-203 4-50 (143)
185 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.00013 4.5E-09 74.4 6.6 46 157-202 6-61 (262)
186 4gt6_A Cell surface protein; l 97.4 0.0033 1.1E-07 68.3 17.9 284 491-795 86-386 (394)
187 3syl_A Protein CBBX; photosynt 97.4 7.6E-05 2.6E-09 78.4 4.2 45 158-202 32-89 (309)
188 3eie_A Vacuolar protein sortin 97.4 0.00019 6.6E-09 75.8 6.5 46 157-202 18-73 (322)
189 1d2n_A N-ethylmaleimide-sensit 97.3 0.00074 2.5E-08 69.3 10.5 46 157-202 33-86 (272)
190 3bos_A Putative DNA replicatio 97.3 4.2E-05 1.4E-09 77.0 0.6 57 157-217 28-87 (242)
191 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00094 3.2E-08 70.3 11.0 46 157-202 12-67 (322)
192 2z4s_A Chromosomal replication 97.3 0.00019 6.4E-09 79.2 5.4 122 157-302 105-236 (440)
193 1sxj_D Activator 1 41 kDa subu 97.2 0.00029 1E-08 75.4 6.4 132 157-303 37-173 (353)
194 3uk6_A RUVB-like 2; hexameric 97.2 0.0021 7E-08 69.2 12.9 46 157-202 44-92 (368)
195 3cf0_A Transitional endoplasmi 97.2 0.0018 6.2E-08 67.4 11.6 46 157-202 15-71 (301)
196 1l8q_A Chromosomal replication 97.2 0.0005 1.7E-08 72.6 7.1 122 157-302 11-140 (324)
197 3d8b_A Fidgetin-like protein 1 97.1 0.00033 1.1E-08 75.0 5.6 46 157-202 84-139 (357)
198 2bjv_A PSP operon transcriptio 97.1 0.00056 1.9E-08 69.9 6.6 47 157-203 6-52 (265)
199 3pvs_A Replication-associated 97.1 0.00026 8.7E-09 78.0 3.8 44 157-202 26-72 (447)
200 4h09_A Hypothetical leucine ri 97.1 0.022 7.4E-07 61.3 19.2 60 513-576 62-122 (379)
201 2qp9_X Vacuolar protein sortin 97.0 0.00069 2.4E-08 72.4 6.8 46 157-202 51-106 (355)
202 1sxj_E Activator 1 40 kDa subu 97.0 0.00072 2.5E-08 72.4 6.9 44 157-202 14-58 (354)
203 2r62_A Cell division protease 97.0 0.00033 1.1E-08 71.8 4.0 46 157-202 11-66 (268)
204 1sxj_A Activator 1 95 kDa subu 97.0 0.00085 2.9E-08 75.7 7.4 46 157-202 39-99 (516)
205 3rw6_A Nuclear RNA export fact 97.0 0.00023 8E-09 72.1 2.4 62 540-603 167-233 (267)
206 3vfd_A Spastin; ATPase, microt 97.0 0.00078 2.7E-08 73.1 6.6 46 157-202 115-170 (389)
207 3b9p_A CG5977-PA, isoform A; A 97.0 0.001 3.6E-08 69.1 7.1 46 157-202 21-76 (297)
208 2zan_A Vacuolar protein sortin 96.9 0.002 6.7E-08 71.1 9.5 46 157-202 134-189 (444)
209 3pfi_A Holliday junction ATP-d 96.9 0.001 3.4E-08 70.8 6.8 46 157-202 29-77 (338)
210 1lv7_A FTSH; alpha/beta domain 96.9 0.0011 3.8E-08 67.3 6.3 46 157-202 12-67 (257)
211 1sxj_C Activator 1 40 kDa subu 96.7 0.0017 5.7E-08 69.1 6.7 44 157-202 25-68 (340)
212 3pxg_A Negative regulator of g 96.7 0.002 6.9E-08 71.5 7.5 44 157-202 180-223 (468)
213 2ce7_A Cell division protein F 96.7 0.0021 7.2E-08 70.9 7.3 46 157-202 16-71 (476)
214 4fcw_A Chaperone protein CLPB; 96.7 0.00091 3.1E-08 70.1 4.1 46 157-202 17-69 (311)
215 2kjq_A DNAA-related protein; s 96.7 0.0014 4.7E-08 60.3 4.8 36 180-217 36-71 (149)
216 1qvr_A CLPB protein; coiled co 96.6 0.0021 7E-08 77.3 6.7 44 157-202 170-213 (854)
217 4h09_A Hypothetical leucine ri 96.6 0.094 3.2E-06 56.2 19.4 258 491-770 68-340 (379)
218 2gno_A DNA polymerase III, gam 96.6 0.0091 3.1E-07 62.0 10.7 117 161-303 1-122 (305)
219 3hu3_A Transitional endoplasmi 96.6 0.0021 7.2E-08 71.4 6.2 46 157-202 204-260 (489)
220 1ojl_A Transcriptional regulat 96.5 0.0028 9.6E-08 66.0 6.7 46 157-202 2-47 (304)
221 4b4t_J 26S protease regulatory 96.5 0.0039 1.3E-07 66.5 7.7 52 157-210 148-210 (405)
222 4b4t_L 26S protease subunit RP 96.5 0.0049 1.7E-07 66.9 8.5 52 157-210 181-243 (437)
223 1a5t_A Delta prime, HOLB; zinc 96.5 0.011 3.8E-07 62.4 11.0 38 164-202 9-46 (334)
224 4b4t_H 26S protease regulatory 96.4 0.0058 2E-07 66.1 8.0 52 157-210 209-271 (467)
225 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0063 2.2E-07 72.2 9.2 44 157-202 186-229 (758)
226 2cvh_A DNA repair and recombin 96.4 0.0092 3.1E-07 58.6 8.9 89 180-276 20-116 (220)
227 3t15_A Ribulose bisphosphate c 96.3 0.0035 1.2E-07 65.0 5.9 29 179-209 35-63 (293)
228 2dhr_A FTSH; AAA+ protein, hex 96.3 0.0065 2.2E-07 67.4 8.3 46 157-202 31-86 (499)
229 4b4t_I 26S protease regulatory 96.3 0.008 2.7E-07 64.4 8.3 52 157-210 182-244 (437)
230 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0037 1.3E-07 64.4 4.8 70 180-277 123-194 (331)
231 3pxi_A Negative regulator of g 96.2 0.0061 2.1E-07 72.2 7.4 44 157-202 180-223 (758)
232 3hr8_A Protein RECA; alpha and 96.1 0.039 1.3E-06 58.2 12.3 101 167-276 47-150 (356)
233 1iy2_A ATP-dependent metallopr 95.9 0.016 5.6E-07 59.3 8.4 46 157-202 40-95 (278)
234 2qgz_A Helicase loader, putati 95.8 0.0074 2.5E-07 62.9 5.1 51 165-217 136-188 (308)
235 4b4t_K 26S protease regulatory 95.8 0.0069 2.3E-07 65.6 4.9 52 157-210 172-234 (428)
236 3pxi_A Negative regulator of g 95.6 0.0052 1.8E-07 72.9 3.4 46 157-202 491-543 (758)
237 2zr9_A Protein RECA, recombina 95.5 0.069 2.4E-06 56.4 11.4 102 166-276 46-150 (349)
238 3rfe_A Platelet glycoprotein I 95.5 0.018 6.2E-07 51.3 5.9 54 524-579 12-67 (130)
239 1u94_A RECA protein, recombina 95.5 0.044 1.5E-06 58.0 9.7 101 166-275 48-151 (356)
240 3cf2_A TER ATPase, transitiona 95.4 0.03 1E-06 65.4 9.0 94 157-276 204-308 (806)
241 4b4t_M 26S protease regulatory 95.4 0.0071 2.4E-07 65.5 3.3 52 157-210 181-243 (434)
242 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.026 9E-07 55.8 7.2 117 180-303 23-168 (235)
243 1xp8_A RECA protein, recombina 95.3 0.036 1.2E-06 58.9 8.5 101 166-275 59-162 (366)
244 1ypw_A Transitional endoplasmi 95.3 0.016 5.4E-07 68.8 6.2 46 157-202 204-260 (806)
245 3io5_A Recombination and repai 95.2 0.079 2.7E-06 54.3 10.3 87 182-277 30-123 (333)
246 1n0w_A DNA repair protein RAD5 95.2 0.047 1.6E-06 54.3 8.5 94 180-276 24-130 (243)
247 1v5w_A DMC1, meiotic recombina 95.1 0.053 1.8E-06 57.3 9.2 96 178-276 120-230 (343)
248 2x8a_A Nuclear valosin-contain 95.1 0.035 1.2E-06 56.6 7.3 46 157-202 10-66 (274)
249 1g5t_A COB(I)alamin adenosyltr 95.0 0.018 6.2E-07 54.8 4.5 116 180-303 28-163 (196)
250 1rz3_A Hypothetical protein rb 95.0 0.019 6.5E-07 55.6 4.7 41 162-202 3-44 (201)
251 3c8u_A Fructokinase; YP_612366 95.0 0.013 4.4E-07 57.2 3.4 37 166-202 8-44 (208)
252 2z43_A DNA repair and recombin 94.9 0.036 1.2E-06 58.2 7.0 94 180-276 107-214 (324)
253 3m6a_A ATP-dependent protease 94.9 0.033 1.1E-06 62.9 6.9 45 158-202 82-130 (543)
254 2b8t_A Thymidine kinase; deoxy 94.8 0.014 4.7E-07 57.4 3.1 113 180-304 12-127 (223)
255 1in4_A RUVB, holliday junction 94.7 0.0092 3.1E-07 63.0 1.7 46 157-202 25-73 (334)
256 1qvr_A CLPB protein; coiled co 94.7 0.023 7.8E-07 68.2 5.4 45 158-202 559-610 (854)
257 2i1q_A DNA repair and recombin 94.7 0.043 1.5E-06 57.5 6.9 95 179-276 97-215 (322)
258 1ofh_A ATP-dependent HSL prote 94.6 0.01 3.5E-07 61.8 1.7 46 157-202 15-72 (310)
259 3lw7_A Adenylate kinase relate 94.5 0.016 5.5E-07 54.4 2.9 20 181-200 2-21 (179)
260 1pgv_A TMD-1, tropomodulin TMD 94.5 0.024 8.2E-07 54.2 4.0 41 516-556 66-111 (197)
261 1zp6_A Hypothetical protein AT 94.5 0.02 6.9E-07 54.8 3.4 23 180-202 9-31 (191)
262 1odf_A YGR205W, hypothetical 3 94.4 0.034 1.2E-06 57.1 5.1 26 177-202 28-53 (290)
263 1pgv_A TMD-1, tropomodulin TMD 94.3 0.067 2.3E-06 51.1 6.6 88 512-600 33-136 (197)
264 3rfe_A Platelet glycoprotein I 94.3 0.05 1.7E-06 48.4 5.3 54 546-602 11-67 (130)
265 1qhx_A CPT, protein (chloramph 94.2 0.017 5.9E-07 54.5 2.2 22 181-202 4-25 (178)
266 3kb2_A SPBC2 prophage-derived 94.1 0.021 7.3E-07 53.4 2.7 22 181-202 2-23 (173)
267 1fx0_B ATP synthase beta chain 94.0 0.092 3.1E-06 57.2 7.7 93 181-277 166-278 (498)
268 3hws_A ATP-dependent CLP prote 93.9 0.023 7.8E-07 60.8 2.8 45 158-202 16-73 (363)
269 3vaa_A Shikimate kinase, SK; s 93.9 0.024 8.3E-07 54.7 2.7 23 180-202 25-47 (199)
270 2c9o_A RUVB-like 1; hexameric 93.9 0.032 1.1E-06 61.7 3.9 46 157-202 37-85 (456)
271 2ck3_D ATP synthase subunit be 93.8 0.064 2.2E-06 58.2 6.0 105 168-277 142-265 (482)
272 1kgd_A CASK, peripheral plasma 93.8 0.027 9.1E-07 53.4 2.7 23 180-202 5-27 (180)
273 2px0_A Flagellar biosynthesis 93.8 0.11 3.9E-06 53.4 7.7 23 180-202 105-127 (296)
274 1ly1_A Polynucleotide kinase; 93.8 0.031 1.1E-06 52.7 3.2 22 181-202 3-24 (181)
275 1kag_A SKI, shikimate kinase I 93.7 0.023 8E-07 53.3 2.2 22 181-202 5-26 (173)
276 2r44_A Uncharacterized protein 93.7 0.029 1E-06 59.0 3.1 42 157-202 27-68 (331)
277 4gp7_A Metallophosphoesterase; 93.6 0.037 1.3E-06 52.0 3.3 23 180-202 9-31 (171)
278 1knq_A Gluconate kinase; ALFA/ 93.5 0.036 1.2E-06 52.1 3.2 23 180-202 8-30 (175)
279 3uie_A Adenylyl-sulfate kinase 93.5 0.036 1.2E-06 53.5 3.2 23 180-202 25-47 (200)
280 1j8m_F SRP54, signal recogniti 93.5 0.27 9.3E-06 50.5 10.0 36 180-217 98-133 (297)
281 2ga8_A Hypothetical 39.9 kDa p 93.5 0.05 1.7E-06 56.9 4.3 43 160-202 2-46 (359)
282 2qt1_A Nicotinamide riboside k 93.4 0.045 1.6E-06 53.1 3.7 24 179-202 20-43 (207)
283 2bdt_A BH3686; alpha-beta prot 93.4 0.039 1.3E-06 52.7 3.2 22 181-202 3-24 (189)
284 3trf_A Shikimate kinase, SK; a 93.4 0.034 1.2E-06 52.8 2.8 23 180-202 5-27 (185)
285 3nbx_X ATPase RAVA; AAA+ ATPas 93.3 0.044 1.5E-06 60.8 3.8 42 157-202 22-63 (500)
286 3fwy_A Light-independent proto 93.3 0.042 1.4E-06 57.2 3.3 24 179-202 47-70 (314)
287 4eun_A Thermoresistant glucoki 93.3 0.037 1.3E-06 53.5 2.7 23 180-202 29-51 (200)
288 1nks_A Adenylate kinase; therm 93.2 0.046 1.6E-06 52.2 3.3 22 181-202 2-23 (194)
289 1pzn_A RAD51, DNA repair and r 93.2 0.11 3.6E-06 55.1 6.4 96 179-277 130-243 (349)
290 3tr0_A Guanylate kinase, GMP k 93.1 0.042 1.4E-06 53.1 2.9 22 181-202 8-29 (205)
291 3asz_A Uridine kinase; cytidin 93.1 0.05 1.7E-06 52.9 3.5 23 180-202 6-28 (211)
292 1jjv_A Dephospho-COA kinase; P 93.1 0.048 1.7E-06 52.8 3.3 22 181-202 3-24 (206)
293 2rhm_A Putative kinase; P-loop 93.1 0.054 1.8E-06 51.7 3.6 23 180-202 5-27 (193)
294 2if2_A Dephospho-COA kinase; a 93.0 0.046 1.6E-06 52.9 3.1 22 181-202 2-23 (204)
295 1uj2_A Uridine-cytidine kinase 93.0 0.049 1.7E-06 54.8 3.3 24 179-202 21-44 (252)
296 3lda_A DNA repair protein RAD5 93.0 0.26 8.9E-06 52.9 9.1 93 180-275 178-283 (400)
297 1uf9_A TT1252 protein; P-loop, 93.0 0.056 1.9E-06 52.1 3.6 24 179-202 7-30 (203)
298 3t61_A Gluconokinase; PSI-biol 93.0 0.038 1.3E-06 53.4 2.4 23 180-202 18-40 (202)
299 1zuh_A Shikimate kinase; alpha 92.9 0.044 1.5E-06 51.1 2.7 24 179-202 6-29 (168)
300 3a00_A Guanylate kinase, GMP k 92.9 0.036 1.2E-06 52.8 2.1 22 181-202 2-23 (186)
301 1ye8_A Protein THEP1, hypothet 92.9 0.049 1.7E-06 51.4 2.9 21 182-202 2-22 (178)
302 3bh0_A DNAB-like replicative h 92.8 0.53 1.8E-05 48.9 11.0 54 179-238 67-120 (315)
303 2jaq_A Deoxyguanosine kinase; 92.8 0.05 1.7E-06 52.5 2.9 21 182-202 2-22 (205)
304 2ze6_A Isopentenyl transferase 92.8 0.053 1.8E-06 54.6 3.2 22 181-202 2-23 (253)
305 3iij_A Coilin-interacting nucl 92.8 0.04 1.4E-06 52.1 2.2 23 180-202 11-33 (180)
306 2hf9_A Probable hydrogenase ni 92.7 0.082 2.8E-06 51.9 4.5 35 166-202 26-60 (226)
307 1kht_A Adenylate kinase; phosp 92.7 0.052 1.8E-06 51.7 2.9 22 181-202 4-25 (192)
308 2j41_A Guanylate kinase; GMP, 92.7 0.052 1.8E-06 52.5 2.9 23 180-202 6-28 (207)
309 3kl4_A SRP54, signal recogniti 92.7 0.33 1.1E-05 52.5 9.5 24 179-202 96-119 (433)
310 1um8_A ATP-dependent CLP prote 92.7 0.051 1.7E-06 58.3 3.1 46 157-202 21-94 (376)
311 3tau_A Guanylate kinase, GMP k 92.7 0.05 1.7E-06 52.9 2.7 23 180-202 8-30 (208)
312 1xjc_A MOBB protein homolog; s 92.7 0.053 1.8E-06 50.5 2.8 24 179-202 3-26 (169)
313 1vma_A Cell division protein F 92.7 0.16 5.4E-06 52.5 6.6 91 179-275 103-196 (306)
314 1ixz_A ATP-dependent metallopr 92.7 0.051 1.8E-06 54.7 2.9 46 157-202 16-71 (254)
315 2yvu_A Probable adenylyl-sulfa 92.7 0.058 2E-06 51.3 3.2 24 179-202 12-35 (186)
316 2xxa_A Signal recognition part 92.6 0.37 1.3E-05 52.3 9.8 24 179-202 99-122 (433)
317 1via_A Shikimate kinase; struc 92.6 0.044 1.5E-06 51.6 2.2 22 181-202 5-26 (175)
318 1cke_A CK, MSSA, protein (cyti 92.6 0.054 1.9E-06 53.3 2.9 22 181-202 6-27 (227)
319 1ukz_A Uridylate kinase; trans 92.6 0.065 2.2E-06 51.7 3.5 24 179-202 14-37 (203)
320 3jvv_A Twitching mobility prot 92.6 0.15 5.3E-06 53.8 6.6 111 180-307 123-235 (356)
321 2qor_A Guanylate kinase; phosp 92.6 0.043 1.5E-06 53.1 2.1 23 180-202 12-34 (204)
322 2wsm_A Hydrogenase expression/ 92.5 0.074 2.5E-06 52.0 3.7 40 161-202 13-52 (221)
323 1y63_A LMAJ004144AAA protein; 92.5 0.062 2.1E-06 51.0 3.0 23 180-202 10-32 (184)
324 1lvg_A Guanylate kinase, GMP k 92.4 0.047 1.6E-06 52.6 2.2 22 181-202 5-26 (198)
325 1tev_A UMP-CMP kinase; ploop, 92.4 0.064 2.2E-06 51.2 3.2 23 180-202 3-25 (196)
326 2ffh_A Protein (FFH); SRP54, s 92.4 0.22 7.4E-06 53.8 7.5 36 180-217 98-133 (425)
327 1htw_A HI0065; nucleotide-bind 92.4 0.071 2.4E-06 49.2 3.2 23 180-202 33-55 (158)
328 2bbw_A Adenylate kinase 4, AK4 92.4 0.06 2E-06 53.9 2.9 23 180-202 27-49 (246)
329 2c95_A Adenylate kinase 1; tra 92.4 0.065 2.2E-06 51.3 3.1 23 180-202 9-31 (196)
330 1gvn_B Zeta; postsegregational 92.4 0.11 3.9E-06 53.2 5.1 24 179-202 32-55 (287)
331 3cm0_A Adenylate kinase; ATP-b 92.3 0.068 2.3E-06 50.7 3.2 23 180-202 4-26 (186)
332 1ex7_A Guanylate kinase; subst 92.3 0.039 1.3E-06 52.4 1.4 22 181-202 2-23 (186)
333 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.069 2.4E-06 54.0 3.3 23 180-202 4-26 (260)
334 3aez_A Pantothenate kinase; tr 92.3 0.071 2.4E-06 55.4 3.5 24 179-202 89-112 (312)
335 2iyv_A Shikimate kinase, SK; t 92.3 0.048 1.6E-06 51.8 1.9 21 182-202 4-24 (184)
336 3tqc_A Pantothenate kinase; bi 92.3 0.078 2.7E-06 55.1 3.7 25 178-202 90-114 (321)
337 2orw_A Thymidine kinase; TMTK, 92.2 0.057 2E-06 51.3 2.5 22 181-202 4-25 (184)
338 1znw_A Guanylate kinase, GMP k 92.2 0.061 2.1E-06 52.2 2.8 23 180-202 20-42 (207)
339 4a74_A DNA repair and recombin 92.2 0.17 5.7E-06 49.7 6.1 46 180-227 25-74 (231)
340 2grj_A Dephospho-COA kinase; T 92.2 0.075 2.6E-06 50.8 3.2 24 179-202 11-34 (192)
341 3ice_A Transcription terminati 92.2 0.18 6.3E-06 53.0 6.3 40 180-224 174-216 (422)
342 2bwj_A Adenylate kinase 5; pho 92.1 0.067 2.3E-06 51.3 2.9 23 180-202 12-34 (199)
343 1qf9_A UMP/CMP kinase, protein 92.1 0.078 2.7E-06 50.5 3.3 23 180-202 6-28 (194)
344 1zu4_A FTSY; GTPase, signal re 92.1 0.14 4.6E-06 53.4 5.3 37 179-217 104-140 (320)
345 3e70_C DPA, signal recognition 92.0 0.097 3.3E-06 54.7 4.1 24 179-202 128-151 (328)
346 4e22_A Cytidylate kinase; P-lo 92.0 0.07 2.4E-06 53.6 2.9 23 180-202 27-49 (252)
347 1e6c_A Shikimate kinase; phosp 92.0 0.057 2E-06 50.5 2.1 22 181-202 3-24 (173)
348 3tlx_A Adenylate kinase 2; str 91.9 0.085 2.9E-06 52.7 3.5 24 179-202 28-51 (243)
349 2f1r_A Molybdopterin-guanine d 91.9 0.055 1.9E-06 50.7 1.9 23 180-202 2-24 (171)
350 2plr_A DTMP kinase, probable t 91.9 0.079 2.7E-06 51.4 3.2 22 181-202 5-26 (213)
351 2pt5_A Shikimate kinase, SK; a 91.9 0.077 2.6E-06 49.3 2.9 21 182-202 2-22 (168)
352 3p32_A Probable GTPase RV1496/ 91.9 0.11 3.8E-06 55.1 4.5 37 166-202 65-101 (355)
353 2p5t_B PEZT; postsegregational 91.9 0.1 3.5E-06 52.4 4.0 37 166-202 15-54 (253)
354 2f6r_A COA synthase, bifunctio 91.8 0.09 3.1E-06 53.8 3.6 23 179-201 74-96 (281)
355 2jeo_A Uridine-cytidine kinase 91.8 0.089 3E-06 52.6 3.4 23 180-202 25-47 (245)
356 1ls1_A Signal recognition part 91.8 0.27 9.1E-06 50.6 7.1 36 180-217 98-133 (295)
357 3ney_A 55 kDa erythrocyte memb 91.8 0.076 2.6E-06 50.8 2.7 23 180-202 19-41 (197)
358 1z6g_A Guanylate kinase; struc 91.8 0.062 2.1E-06 52.7 2.2 23 180-202 23-45 (218)
359 2cdn_A Adenylate kinase; phosp 91.7 0.081 2.8E-06 51.0 2.9 23 180-202 20-42 (201)
360 3vr4_D V-type sodium ATPase su 91.7 0.078 2.7E-06 57.2 2.9 91 182-276 153-259 (465)
361 2vli_A Antibiotic resistance p 91.7 0.067 2.3E-06 50.6 2.2 23 180-202 5-27 (183)
362 2ewv_A Twitching motility prot 91.6 0.23 7.9E-06 52.9 6.6 110 180-307 136-248 (372)
363 1sky_E F1-ATPase, F1-ATP synth 91.6 0.16 5.5E-06 55.2 5.3 49 182-234 153-203 (473)
364 2pbr_A DTMP kinase, thymidylat 91.6 0.086 2.9E-06 50.3 2.9 21 182-202 2-22 (195)
365 3tif_A Uncharacterized ABC tra 91.4 0.15 5.2E-06 50.5 4.6 23 180-202 31-53 (235)
366 1gtv_A TMK, thymidylate kinase 91.4 0.055 1.9E-06 52.7 1.3 21 182-202 2-22 (214)
367 2z0h_A DTMP kinase, thymidylat 91.4 0.17 5.9E-06 48.3 4.9 21 182-202 2-22 (197)
368 1rj9_A FTSY, signal recognitio 91.4 0.096 3.3E-06 54.1 3.2 23 180-202 102-124 (304)
369 2pez_A Bifunctional 3'-phospho 91.4 0.1 3.5E-06 49.1 3.2 23 180-202 5-27 (179)
370 3b85_A Phosphate starvation-in 91.3 0.13 4.5E-06 49.8 3.9 22 181-202 23-44 (208)
371 1g8p_A Magnesium-chelatase 38 91.3 0.042 1.4E-06 58.2 0.4 44 157-202 24-67 (350)
372 1nn5_A Similar to deoxythymidy 91.3 0.11 3.7E-06 50.6 3.3 23 180-202 9-31 (215)
373 1s96_A Guanylate kinase, GMP k 91.3 0.089 3.1E-06 51.5 2.7 23 180-202 16-38 (219)
374 2i3b_A HCR-ntpase, human cance 91.3 0.08 2.7E-06 50.5 2.3 21 182-202 3-23 (189)
375 2wwf_A Thymidilate kinase, put 91.2 0.098 3.4E-06 50.7 2.9 23 180-202 10-32 (212)
376 2pcj_A ABC transporter, lipopr 91.1 0.11 3.6E-06 51.2 3.1 22 181-202 31-52 (224)
377 3gfo_A Cobalt import ATP-bindi 91.1 0.16 5.6E-06 51.5 4.6 22 181-202 35-56 (275)
378 1g41_A Heat shock protein HSLU 91.1 0.1 3.5E-06 56.6 3.2 46 157-202 15-72 (444)
379 1vht_A Dephospho-COA kinase; s 91.1 0.12 4.1E-06 50.5 3.4 23 180-202 4-26 (218)
380 3nwj_A ATSK2; P loop, shikimat 91.1 0.08 2.7E-06 53.0 2.2 22 181-202 49-70 (250)
381 1zd8_A GTP:AMP phosphotransfer 91.0 0.11 3.7E-06 51.2 3.1 23 180-202 7-29 (227)
382 3l0o_A Transcription terminati 91.0 0.27 9.1E-06 51.7 6.0 35 167-202 163-197 (427)
383 1m7g_A Adenylylsulfate kinase; 91.0 0.12 4E-06 50.3 3.2 23 180-202 25-47 (211)
384 1b0u_A Histidine permease; ABC 90.9 0.17 6E-06 51.0 4.6 23 180-202 32-54 (262)
385 3lnc_A Guanylate kinase, GMP k 90.9 0.078 2.7E-06 52.4 1.9 23 180-202 27-50 (231)
386 2onk_A Molybdate/tungstate ABC 90.9 0.11 3.7E-06 51.7 2.9 22 181-202 25-46 (240)
387 3b9q_A Chloroplast SRP recepto 90.9 0.12 4.2E-06 53.3 3.4 23 180-202 100-122 (302)
388 1sq5_A Pantothenate kinase; P- 90.8 0.13 4.5E-06 53.3 3.6 24 179-202 79-102 (308)
389 2ehv_A Hypothetical protein PH 90.8 0.11 3.8E-06 51.9 2.9 23 180-202 30-52 (251)
390 3upu_A ATP-dependent DNA helic 90.8 0.48 1.7E-05 52.1 8.4 42 158-202 22-67 (459)
391 3umf_A Adenylate kinase; rossm 90.7 0.14 4.8E-06 49.9 3.5 25 178-202 27-51 (217)
392 1aky_A Adenylate kinase; ATP:A 90.7 0.12 4E-06 50.7 2.9 23 180-202 4-26 (220)
393 3dm5_A SRP54, signal recogniti 90.6 0.55 1.9E-05 50.8 8.3 24 179-202 99-122 (443)
394 1np6_A Molybdopterin-guanine d 90.6 0.12 4.1E-06 48.4 2.8 23 180-202 6-28 (174)
395 3d3q_A TRNA delta(2)-isopenten 90.6 0.13 4.4E-06 53.7 3.2 22 181-202 8-29 (340)
396 2v54_A DTMP kinase, thymidylat 90.5 0.12 4E-06 49.9 2.7 23 180-202 4-26 (204)
397 3fb4_A Adenylate kinase; psych 90.5 0.12 4.2E-06 50.3 2.9 21 182-202 2-22 (216)
398 2yhs_A FTSY, cell division pro 90.5 0.21 7.2E-06 54.7 4.9 24 179-202 292-315 (503)
399 2ff7_A Alpha-hemolysin translo 90.5 0.21 7.1E-06 49.9 4.6 22 181-202 36-57 (247)
400 1zak_A Adenylate kinase; ATP:A 90.5 0.11 3.8E-06 50.9 2.6 23 180-202 5-27 (222)
401 2cbz_A Multidrug resistance-as 90.5 0.13 4.4E-06 51.1 3.0 24 180-203 31-54 (237)
402 3ake_A Cytidylate kinase; CMP 90.4 0.13 4.4E-06 49.7 3.0 21 182-202 4-24 (208)
403 1vpl_A ABC transporter, ATP-bi 90.4 0.21 7.2E-06 50.1 4.6 23 180-202 41-63 (256)
404 3dl0_A Adenylate kinase; phosp 90.3 0.13 4.5E-06 50.1 2.9 21 182-202 2-22 (216)
405 1ji0_A ABC transporter; ATP bi 90.2 0.14 4.7E-06 51.0 3.0 22 181-202 33-54 (240)
406 1mv5_A LMRA, multidrug resista 90.2 0.15 5E-06 50.9 3.2 23 180-202 28-50 (243)
407 1cr0_A DNA primase/helicase; R 90.2 0.32 1.1E-05 50.0 6.0 52 180-237 35-87 (296)
408 3cmu_A Protein RECA, recombina 90.2 0.37 1.3E-05 61.6 7.5 99 168-275 1414-1515(2050)
409 2ixe_A Antigen peptide transpo 90.2 0.22 7.7E-06 50.4 4.6 23 180-202 45-67 (271)
410 1g6h_A High-affinity branched- 90.1 0.14 4.8E-06 51.5 3.0 22 181-202 34-55 (257)
411 2olj_A Amino acid ABC transpor 90.1 0.14 4.8E-06 51.6 3.0 23 180-202 50-72 (263)
412 1sgw_A Putative ABC transporte 90.1 0.12 4.1E-06 50.3 2.4 22 181-202 36-57 (214)
413 2r9v_A ATP synthase subunit al 90.1 0.3 1E-05 53.3 5.7 91 181-277 176-279 (515)
414 4g1u_C Hemin import ATP-bindin 90.1 0.14 4.8E-06 51.8 3.0 23 180-202 37-59 (266)
415 2pze_A Cystic fibrosis transme 90.0 0.15 5E-06 50.4 3.0 22 181-202 35-56 (229)
416 4a1f_A DNAB helicase, replicat 90.0 0.57 1.9E-05 48.9 7.6 54 180-239 46-99 (338)
417 1yrb_A ATP(GTP)binding protein 90.0 0.16 5.4E-06 51.2 3.3 24 179-202 13-36 (262)
418 2yz2_A Putative ABC transporte 89.9 0.24 8.2E-06 50.1 4.6 23 180-202 33-55 (266)
419 3llm_A ATP-dependent RNA helic 89.9 1.5 5.2E-05 43.1 10.4 104 166-276 66-187 (235)
420 2d2e_A SUFC protein; ABC-ATPas 89.9 0.15 5.1E-06 51.1 3.0 22 181-202 30-51 (250)
421 2wji_A Ferrous iron transport 89.9 0.18 6.1E-06 46.6 3.3 23 181-203 4-26 (165)
422 2zej_A Dardarin, leucine-rich 89.9 0.15 5.1E-06 48.2 2.9 22 182-203 4-25 (184)
423 3r20_A Cytidylate kinase; stru 89.9 0.15 5.2E-06 50.2 2.9 23 180-202 9-31 (233)
424 1tue_A Replication protein E1; 89.9 0.18 6.1E-06 48.2 3.3 36 166-202 45-80 (212)
425 2qi9_C Vitamin B12 import ATP- 89.8 0.21 7.2E-06 49.9 4.0 22 181-202 27-48 (249)
426 3end_A Light-independent proto 89.8 0.17 5.7E-06 52.5 3.4 24 179-202 40-63 (307)
427 1oix_A RAS-related protein RAB 89.8 0.17 5.6E-06 48.3 3.1 24 180-203 29-52 (191)
428 2og2_A Putative signal recogni 89.7 0.17 5.9E-06 53.4 3.4 23 180-202 157-179 (359)
429 2zu0_C Probable ATP-dependent 89.7 0.16 5.4E-06 51.5 2.9 23 180-202 46-68 (267)
430 1fx0_A ATP synthase alpha chai 89.6 0.34 1.2E-05 52.9 5.6 91 181-277 164-267 (507)
431 2ghi_A Transport protein; mult 89.6 0.16 5.6E-06 51.1 3.0 23 180-202 46-68 (260)
432 3a8t_A Adenylate isopentenyltr 89.6 0.18 6.2E-06 52.4 3.3 23 180-202 40-62 (339)
433 3be4_A Adenylate kinase; malar 89.5 0.17 6E-06 49.3 3.1 22 181-202 6-27 (217)
434 2afh_E Nitrogenase iron protei 89.5 0.19 6.5E-06 51.5 3.5 23 180-202 2-24 (289)
435 1e4v_A Adenylate kinase; trans 89.4 0.18 6.1E-06 49.1 3.1 21 182-202 2-22 (214)
436 1cp2_A CP2, nitrogenase iron p 89.4 0.19 6.4E-06 50.9 3.3 35 181-217 2-36 (269)
437 2nq2_C Hypothetical ABC transp 89.4 0.17 5.9E-06 50.7 2.9 22 181-202 32-53 (253)
438 2ihy_A ABC transporter, ATP-bi 89.4 0.17 5.9E-06 51.5 3.0 22 181-202 48-69 (279)
439 3k1j_A LON protease, ATP-depen 89.3 0.26 9E-06 56.4 4.8 42 157-202 41-82 (604)
440 2xb4_A Adenylate kinase; ATP-b 89.3 0.18 6E-06 49.5 2.9 21 182-202 2-22 (223)
441 2v3c_C SRP54, signal recogniti 89.2 0.19 6.6E-06 54.5 3.4 23 180-202 99-121 (432)
442 1fzq_A ADP-ribosylation factor 89.1 0.26 8.9E-06 46.3 3.9 25 179-203 15-39 (181)
443 2vp4_A Deoxynucleoside kinase; 89.1 0.15 5.1E-06 50.4 2.2 24 179-202 19-42 (230)
444 4eaq_A DTMP kinase, thymidylat 89.1 0.3 1E-05 48.1 4.4 23 180-202 26-48 (229)
445 3crm_A TRNA delta(2)-isopenten 89.1 0.2 6.7E-06 51.9 3.2 22 181-202 6-27 (323)
446 3bgw_A DNAB-like replicative h 89.0 1.2 4.1E-05 48.6 9.6 64 167-237 185-248 (444)
447 2dyk_A GTP-binding protein; GT 88.9 0.22 7.6E-06 45.4 3.2 23 181-203 2-24 (161)
448 2f9l_A RAB11B, member RAS onco 88.9 0.18 6.3E-06 48.2 2.7 24 180-203 5-28 (199)
449 2qe7_A ATP synthase subunit al 88.8 0.49 1.7E-05 51.6 6.1 91 181-277 163-266 (502)
450 1svm_A Large T antigen; AAA+ f 88.8 0.32 1.1E-05 51.7 4.6 35 168-202 157-191 (377)
451 3gqb_B V-type ATP synthase bet 88.7 0.15 5E-06 55.0 2.0 94 181-276 148-262 (464)
452 2wjg_A FEOB, ferrous iron tran 88.7 0.26 8.7E-06 46.5 3.6 24 180-203 7-30 (188)
453 1ltq_A Polynucleotide kinase; 88.7 0.21 7.3E-06 51.5 3.2 22 181-202 3-24 (301)
454 2c61_A A-type ATP synthase non 88.7 0.18 6.2E-06 54.7 2.6 93 181-275 153-259 (469)
455 1a7j_A Phosphoribulokinase; tr 88.6 0.14 4.7E-06 52.6 1.6 23 180-202 5-27 (290)
456 2eyu_A Twitching motility prot 88.6 0.22 7.6E-06 50.1 3.2 112 180-307 25-137 (261)
457 1ak2_A Adenylate kinase isoenz 88.5 0.21 7.3E-06 49.3 2.9 23 180-202 16-38 (233)
458 1tq4_A IIGP1, interferon-induc 88.5 0.21 7.1E-06 53.8 3.0 24 179-202 68-91 (413)
459 3nh6_A ATP-binding cassette SU 88.5 0.2 6.8E-06 51.6 2.8 23 180-202 80-102 (306)
460 3exa_A TRNA delta(2)-isopenten 88.5 0.23 7.9E-06 50.9 3.2 23 180-202 3-25 (322)
461 3mfy_A V-type ATP synthase alp 88.5 0.46 1.6E-05 52.3 5.6 59 168-233 216-275 (588)
462 1f6b_A SAR1; gtpases, N-termin 88.4 0.39 1.3E-05 45.9 4.7 34 169-203 15-48 (198)
463 2pjz_A Hypothetical protein ST 88.4 0.23 7.7E-06 50.1 3.0 22 181-202 31-52 (263)
464 2dr3_A UPF0273 protein PH0284; 88.3 0.23 7.8E-06 49.3 3.0 36 180-217 23-58 (247)
465 2ce2_X GTPase HRAS; signaling 88.3 0.23 7.9E-06 45.4 2.9 22 182-203 5-26 (166)
466 2v9p_A Replication protein E1; 88.3 0.22 7.6E-06 51.2 2.9 24 179-202 125-148 (305)
467 1q3t_A Cytidylate kinase; nucl 88.3 0.24 8.1E-06 49.1 3.1 24 179-202 15-38 (236)
468 3sop_A Neuronal-specific septi 88.2 0.24 8.1E-06 50.2 3.0 21 182-202 4-24 (270)
469 2p67_A LAO/AO transport system 88.2 0.41 1.4E-05 50.4 5.0 25 178-202 54-78 (341)
470 1nlf_A Regulatory protein REPA 88.1 0.24 8.2E-06 50.5 3.1 23 180-202 30-52 (279)
471 2j37_W Signal recognition part 88.1 0.37 1.2E-05 53.3 4.7 24 179-202 100-123 (504)
472 3q72_A GTP-binding protein RAD 88.1 0.25 8.5E-06 45.4 3.0 22 182-203 4-25 (166)
473 2nzj_A GTP-binding protein REM 88.1 0.24 8.2E-06 45.9 2.9 24 180-203 4-27 (175)
474 2gj8_A MNME, tRNA modification 88.1 0.25 8.6E-06 46.0 3.0 23 181-203 5-27 (172)
475 1nij_A Hypothetical protein YJ 87.9 0.26 8.9E-06 51.3 3.2 24 179-202 3-26 (318)
476 2bbs_A Cystic fibrosis transme 87.9 0.26 8.9E-06 50.4 3.1 23 180-202 64-86 (290)
477 3zvl_A Bifunctional polynucleo 87.8 0.23 7.8E-06 53.9 2.8 24 179-202 257-280 (416)
478 1q57_A DNA primase/helicase; d 87.8 2.1 7.1E-05 47.6 10.8 55 179-239 241-296 (503)
479 1z2a_A RAS-related protein RAB 87.7 0.25 8.6E-06 45.4 2.7 24 180-203 5-28 (168)
480 3con_A GTPase NRAS; structural 87.7 0.25 8.4E-06 46.8 2.7 23 181-203 22-44 (190)
481 3hjn_A DTMP kinase, thymidylat 87.7 0.54 1.8E-05 45.0 5.1 34 182-217 2-35 (197)
482 2lkc_A Translation initiation 87.7 0.35 1.2E-05 45.0 3.7 25 179-203 7-31 (178)
483 2qm8_A GTPase/ATPase; G protei 87.6 0.44 1.5E-05 50.0 4.7 34 169-202 44-77 (337)
484 2erx_A GTP-binding protein DI- 87.5 0.27 9.2E-06 45.3 2.8 23 181-203 4-26 (172)
485 2r6a_A DNAB helicase, replicat 87.5 1.5 5.1E-05 48.1 9.2 51 179-235 202-253 (454)
486 3kta_A Chromosome segregation 87.5 0.29 1E-05 46.0 3.1 21 182-202 28-48 (182)
487 3fvq_A Fe(3+) IONS import ATP- 87.5 0.44 1.5E-05 50.1 4.7 22 181-202 31-52 (359)
488 3cmu_A Protein RECA, recombina 87.4 1.1 3.7E-05 57.5 8.8 108 159-275 361-471 (2050)
489 3foz_A TRNA delta(2)-isopenten 87.4 0.3 1E-05 50.0 3.2 23 180-202 10-32 (316)
490 3sr0_A Adenylate kinase; phosp 87.3 0.29 1E-05 47.2 3.0 21 182-202 2-22 (206)
491 2ocp_A DGK, deoxyguanosine kin 87.2 0.33 1.1E-05 48.1 3.5 23 180-202 2-24 (241)
492 2qmh_A HPR kinase/phosphorylas 87.2 0.34 1.2E-05 46.0 3.2 23 180-202 34-56 (205)
493 3tui_C Methionine import ATP-b 87.1 0.28 9.7E-06 51.7 2.9 23 180-202 54-76 (366)
494 3cf2_A TER ATPase, transitiona 87.1 0.34 1.2E-05 56.6 3.9 46 157-202 477-533 (806)
495 1z08_A RAS-related protein RAB 87.0 0.3 1E-05 45.0 2.8 24 180-203 6-29 (170)
496 1pui_A ENGB, probable GTP-bind 87.0 0.22 7.4E-06 48.1 1.8 24 180-203 26-49 (210)
497 1u8z_A RAS-related protein RAL 86.9 0.3 1E-05 44.8 2.7 24 180-203 4-27 (168)
498 3q85_A GTP-binding protein REM 86.9 0.4 1.4E-05 44.1 3.6 22 181-202 3-24 (169)
499 3ez2_A Plasmid partition prote 86.8 1.3 4.3E-05 47.7 8.0 26 177-202 105-131 (398)
500 3cbq_A GTP-binding protein REM 86.8 0.28 9.5E-06 46.9 2.5 24 179-202 22-45 (195)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-44 Score=415.43 Aligned_cols=284 Identities=18% Similarity=0.192 Sum_probs=227.3
Q ss_pred CeEeccccHHHHHHHHHcC-CCCeEEEEEEecCCchHHHHHHHHhC--CcccccCcceeEEEeCCCCCCC--CHHHHHHH
Q 003399 158 DTVGLDDRMEELLDLLIEG-PPQLSVVVILDSIGLDKTAFAGEAYN--SSYVKHYFDCHAWISEPYSNEY--DADQIVDI 232 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~vs~~~--~~~~~~~~ 232 (823)
..|||++++++|.++|..+ +...++|+|+||||+||||||+++|+ |.+++.+|+.++||+ +++.+ +..++++.
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~--vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK--DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE--CCCCSTTHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE--ECCCCCCCHHHHHHH
Confidence 3359999999999999765 44689999999999999999999998 678999999999999 99985 89999999
Q ss_pred HHHHhCCCCC---CcccccCCHHHHHHHHHHHhcCC-cEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh-
Q 003399 233 IIKFLMPSSR---LSEIEDKNYEMKKIILHEYIMTK-RYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT- 307 (823)
Q Consensus 233 i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~- 307 (823)
|+.+++.... .+..+..+.+.++..+++.|++| ||||||||||+.+++ .+.. .+||+||||||++.|+.
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9999987532 11123445677899999999996 999999999998865 2221 16999999999999886
Q ss_pred c------c------------cccCC---CCCCCChhhhHHhHHHHcCCcceeeeeeccc----ccc--------cccCCc
Q 003399 308 S------F------------QLEDG---ENIRLDLVPTGGPLRATYKGWPFFILYHGSI----SLE--------ENIGEA 354 (823)
Q Consensus 308 ~------~------------~f~~~---~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~----~~~--------~~~~~~ 354 (823)
+ + +|... ...++.+.+++++|+++|+|+||||++.+.. .|+ ++....
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL 360 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCS
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccH
Confidence 1 1 22221 1223677889999999999999999992221 111 111145
Q ss_pred CCHHHHHHhcccCCCCCCchhHhh-----------hhcccCCCcccchhHHHHHHHhc--CCCCC-----ChHHHHHHHH
Q 003399 355 VEIPLVLRYFKYCSLPFCLKPCFL-----------YLSVFTAHLEISTRQLYQLWIAE--GFIPD-----NSEATAESYL 416 (823)
Q Consensus 355 ~~i~~~l~~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~-----~~~~~~~~~~ 416 (823)
.++.++| .+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.. ..+++++ ||
T Consensus 361 ~~i~~~l-~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 361 VGVECIT-PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp STTCCCS-SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHH-hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 6789999 9999999999999999 999999999999 8999999 99975 4677777 99
Q ss_pred HHHHhcCceeeeecCCCCcEeeEEcCcchHHHHHhcCCcCCe
Q 003399 417 EQLIKEGFVEAKKRKAGGTINTCSIPGCWRPVLLLVPPEVEF 458 (823)
Q Consensus 417 ~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~a~~~~~~~~~ 458 (823)
++|+++||++....+ ...+|+|||++|++|++++.++++
T Consensus 435 ~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 999999999987643 336899999999999999987664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.7e-36 Score=380.23 Aligned_cols=280 Identities=18% Similarity=0.184 Sum_probs=222.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccc-ccCc-ceeEEEeCCCCCCCC--HHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYV-KHYF-DCHAWISEPYSNEYD--ADQIVDI 232 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~vs~~~~--~~~~~~~ 232 (823)
..||||++++++|.++|...+...++|+|+||||+||||||+++|++.+. ..+| +.++||+ +++..+ ....+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS--IGKQDKSGLLMKLQN 201 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE--CCSCCHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE--ECCcCchHHHHHHHH
Confidence 67999999999999999877667999999999999999999999997544 5555 5777999 998654 4455777
Q ss_pred HHHHhCCCCCCcccccCCHHHHHHHHHHHhcCC--cEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh-cc
Q 003399 233 IIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTK--RYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT-SF 309 (823)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~-~~ 309 (823)
++..+............+.+++...++..+.++ |+||||||||+.++|..+ ++||+||||||++.|+. +.
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 888887644322223567788999999999887 999999999999877653 57999999999999984 11
Q ss_pred -------------------cccCC-CCCCCChhhhHHhHHHHcCCcceeeeeeccc-----------cccc--------c
Q 003399 310 -------------------QLEDG-ENIRLDLVPTGGPLRATYKGWPFFILYHGSI-----------SLEE--------N 350 (823)
Q Consensus 310 -------------------~f~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~-----------~~~~--------~ 350 (823)
+|... ....+.+.+.+++|+++|+|+||||++.... ...+ .
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~ 354 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIR 354 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSS
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcc
Confidence 22111 1334566788999999999999999991110 0011 1
Q ss_pred c---CCcCCHHHHHHhcccCCCCCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceee
Q 003399 351 I---GEAVEIPLVLRYFKYCSLPFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEA 427 (823)
Q Consensus 351 ~---~~~~~i~~~l~~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~~ 427 (823)
. ...+.+..+| .+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++.
T Consensus 355 ~~~~~~~~~~~~~l-~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 355 KSSSYDYEALDEAM-SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp CTTCTTHHHHHHHH-HHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEE
T ss_pred cccccchHHHHHHH-HHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEE
Confidence 1 1224589999 999999999999999999999999999999999999765 4668999999999999997
Q ss_pred eecCCCCcEeeEEcCcchHHHHHhcCCcC
Q 003399 428 KKRKAGGTINTCSIPGCWRPVLLLVPPEV 456 (823)
Q Consensus 428 ~~~~~~g~~~~~~mHdlv~d~a~~~~~~~ 456 (823)
... ++..+|+||+++|++++..+.++
T Consensus 427 ~~~---~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRN---GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EES---SSSEEEECCHHHHHHHHHHTGGG
T ss_pred ecC---CCceEEEecHHHHHHHHhhhhHH
Confidence 653 34467999999999999987765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.9e-35 Score=340.90 Aligned_cols=268 Identities=17% Similarity=0.156 Sum_probs=204.0
Q ss_pred CeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcce-eEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 158 DTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDC-HAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|++ +++.++...++..|++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs--Vs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE--CCCSSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE--eCCCCCHHHHHHHHHHH
Confidence 45999999999999998643 4899999999999999999999987788999986 99999 99999998888888775
Q ss_pred hCCCC-----CCc--ccccCCHHHHHHHHHHHh---cCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhh
Q 003399 237 LMPSS-----RLS--EIEDKNYEMKKIILHEYI---MTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMV 306 (823)
Q Consensus 237 l~~~~-----~~~--~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~ 306 (823)
++... ... .....+.+++...+++.| .+||+||||||||+.++|+.+. +||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHH
Confidence 43210 000 001123456677777766 6899999999999999998763 699999999999987
Q ss_pred h---c---c--c-------ccCCC-------CCCCChhhhHHhHHHHcCCcceeeeeecccc------ccccc-CCcCCH
Q 003399 307 T---S---F--Q-------LEDGE-------NIRLDLVPTGGPLRATYKGWPFFILYHGSIS------LEENI-GEAVEI 357 (823)
Q Consensus 307 ~---~---~--~-------f~~~~-------~~~~~~~~~~~~i~~~c~GlPLai~~~~~~~------~~~~~-~~~~~i 357 (823)
. . + - |..++ .......++..+ .|+|+||||++..... +..+. .....+
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I 355 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHH
Confidence 4 1 1 0 11000 000112233333 4999999999822111 11111 234679
Q ss_pred HHHHHhcccCCCCCCc-hhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCcE
Q 003399 358 PLVLRYFKYCSLPFCL-KPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVEAKKRKAGGTI 436 (823)
Q Consensus 358 ~~~l~~~sy~~L~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~g~~ 436 (823)
..+| ++||+.||++. |+||+|||+||+++.|+.+.++.+|+++| ++.++.++++|+++||++... ..
T Consensus 356 ~aaL-elSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~ 423 (1221)
T 1vt4_I 356 TTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KE 423 (1221)
T ss_dssp HHHH-HHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SS
T ss_pred HHHH-HHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CC
Confidence 9999 99999999999 99999999999999999999999999987 245889999999999999842 22
Q ss_pred eeEEcCcchHHHHH
Q 003399 437 NTCSIPGCWRPVLL 450 (823)
Q Consensus 437 ~~~~mHdlv~d~a~ 450 (823)
..|+|||++++++.
T Consensus 424 ~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 424 STISIPSIYLELKV 437 (1221)
T ss_dssp SEEBCCCHHHHHHH
T ss_pred CEEEehHHHHHHhc
Confidence 57999999999764
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=313.41 Aligned_cols=277 Identities=18% Similarity=0.203 Sum_probs=210.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccc-ccCc-ceeEEEeCCCCCCCCHHHHHHH--
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYV-KHYF-DCHAWISEPYSNEYDADQIVDI-- 232 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~vs~~~~~~~~~~~-- 232 (823)
+.||||+.++++|.++|.......++|+|+||||+||||||+++|++.++ +.+| +.++|++ +++. +...+...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~--~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS--VGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE--EESC-CHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE--CCCC-chHHHHHHHH
Confidence 68999999999999999865556899999999999999999999997666 7889 5899999 8776 33344433
Q ss_pred -HHHHhCCCCCCcccccCCHHHHHHHHHHHhcC--CcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhhc-
Q 003399 233 -IIKFLMPSSRLSEIEDKNYEMKKIILHEYIMT--KRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVTS- 308 (823)
Q Consensus 233 -i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~- 308 (823)
++..++...........+.+.....+.+.+.+ +++||||||||+..+++.+ ++|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 34455532111112345677888888888876 7999999999997765432 568999999999987651
Q ss_pred ----c---------------cccCC-CCCCCChhhhHHhHHHHcCCcceeeeeec------ccccc-----ccc------
Q 003399 309 ----F---------------QLEDG-ENIRLDLVPTGGPLRATYKGWPFFILYHG------SISLE-----ENI------ 351 (823)
Q Consensus 309 ----~---------------~f~~~-~~~~~~~~~~~~~i~~~c~GlPLai~~~~------~~~~~-----~~~------ 351 (823)
+ .|... ........+.+.+|+++|+|+|||+++.. ...|. +..
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~ 353 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRI 353 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCS
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHh
Confidence 1 12111 11122345788999999999999999811 10111 110
Q ss_pred -----CCcCCHHHHHHhcccCCCCCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCcee
Q 003399 352 -----GEAVEIPLVLRYFKYCSLPFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQLIKEGFVE 426 (823)
Q Consensus 352 -----~~~~~i~~~l~~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~L~~~sll~ 426 (823)
.....+..++ ..||+.||++.|.||++||+||+++.|+.+.+..+|.++ .+.+..++++|+++||++
T Consensus 354 ~~~~~~~~~~l~~~l-~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 354 RKSSSYDYEALDEAM-SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLF 425 (591)
T ss_dssp SCCCSSCCHHHHHHH-HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSE
T ss_pred hhccccchHHHHHHH-HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeE
Confidence 1234689999 999999999999999999999999999999999999654 345789999999999998
Q ss_pred eeecCCCCcEeeEEcCcchHHHHHhcCC
Q 003399 427 AKKRKAGGTINTCSIPGCWRPVLLLVPP 454 (823)
Q Consensus 427 ~~~~~~~g~~~~~~mHdlv~d~a~~~~~ 454 (823)
.... +....|+||+++|++++....
T Consensus 426 ~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 426 CDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp EEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred EecC---CCccEEEEcHHHHHHHHhhhh
Confidence 6542 344689999999999998743
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.9e-25 Score=242.74 Aligned_cols=290 Identities=17% Similarity=0.162 Sum_probs=194.8
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
.++++.|.+.++.. ..++..+|..+++|++|+|+++.+..++ ..+..+.+|++|++++|.+..+|+..++++++|
T Consensus 44 l~~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 56666666665543 2344455666666666666666666544 356666666666666666666655533666666
Q ss_pred cEEeCCCCcccccchh-hcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccc
Q 003399 570 YTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLS 648 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~ 648 (823)
++|++++|.+..+|.. +.++++|++|++++|.+.......++++++|+.+++..+...-.. ++.+++|+.|+++++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~- 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL- 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSC-
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccc-
Confidence 6666666666666655 356666666666666655433335566666666666532221112 4556666666666553
Q ss_pred cchhhHHHhhcCCCCCcEEEeecCC-------CCCCCcEEeeCCc--------CcccCccEeEeecccCCCCCcccccCC
Q 003399 649 YNQSLLSKSLCRLSCLESLKLANES-------KMPRLSKIALAEY--------LFPHSLTHLSFSNTVLMDDPMPTLEKL 713 (823)
Q Consensus 649 ~~~~~l~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l 713 (823)
.. .+...++|+.|+++++. ..++|+.|.+.++ ..+++|++|++++|.+....+..++.+
T Consensus 198 --l~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 198 --LS----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp --CS----EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred --cc----ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 11 12233455666655532 2345555555554 567899999999999877777889999
Q ss_pred CCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEE
Q 003399 714 PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFD 793 (823)
Q Consensus 714 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~ 793 (823)
++|+.|+|++|.+.+ ++.....+++|+.|++++| .+..++.....+++|+.|++++|+ +..+| +..+++|+.|+
T Consensus 272 ~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 272 QRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLT 345 (390)
T ss_dssp SSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEE
T ss_pred ccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEE
Confidence 999999999888765 4555678999999999998 577888778889999999999997 56666 67899999999
Q ss_pred ecCCC
Q 003399 794 CWWPQ 798 (823)
Q Consensus 794 l~~c~ 798 (823)
++++|
T Consensus 346 l~~N~ 350 (390)
T 3o6n_A 346 LSHND 350 (390)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 99987
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=9.9e-25 Score=255.66 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=104.9
Q ss_pred CCCCceEEEEEEcCCcccccc-cc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCcc
Q 003399 468 SGKNAKRLNAVERWDDFACLD-DY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLF 543 (823)
Q Consensus 468 ~~~~~r~l~sl~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~ 543 (823)
.+..++++ .+.++....... .. +++|++|.+.++... ...+..|.++++|++|+|++|.+..+ |..++++.
T Consensus 30 ~~~~l~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNI-DLSFNPLKILKSYSFSNFSELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEE-ECCCCCcCEeChhhccCCccCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 55778888 888776654433 22 889999999887652 34556788999999999999998866 78899999
Q ss_pred ccceeeccCCCCcccchhhhhcCCCccEEeCCCCccc--ccchhhcCCCCCceeeccCcccCC
Q 003399 544 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYID--HTADEFWKMNKLRHLNFGSITLPA 604 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~ 604 (823)
+|++|++++|.+..+|+..++++++|++|++++|.+. .+|..++++++|++|++++|.+..
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9999999999988887433489999999999999887 468889999999999998886654
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.8e-25 Score=255.29 Aligned_cols=290 Identities=17% Similarity=0.161 Sum_probs=224.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
.++++.+.+.++.. ..++..+|.++++|++|+|++|.+..+| ..++.+.+|++|+|++|.+..+|+..++++++|
T Consensus 50 l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 67788888777654 2455677788888888888888887654 478888888888888888888877665888888
Q ss_pred cEEeCCCCcccccchh-hcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccc
Q 003399 570 YTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLS 648 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~ 648 (823)
++|+|++|.+..+|.. ++++++|++|++++|.+....+..++++.+|+.+++..+...-.. ++.+++|+.|+++++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~- 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL- 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSC-
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCc-
Confidence 8888888888888766 478888888888888776644446777888888888743322223 6677888888887763
Q ss_pred cchhhHHHhhcCCCCCcEEEeecCC-------CCCCCcEEeeCCc--------CcccCccEeEeecccCCCCCcccccCC
Q 003399 649 YNQSLLSKSLCRLSCLESLKLANES-------KMPRLSKIALAEY--------LFPHSLTHLSFSNTVLMDDPMPTLEKL 713 (823)
Q Consensus 649 ~~~~~l~~~l~~l~~L~~L~l~~~~-------~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l 713 (823)
.. .+....+|+.|++++|. .+++|+.|.+.++ ..+++|+.|+|++|.+....+..++.+
T Consensus 204 --l~----~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 204 --LS----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp --CS----EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred --cc----cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 11 23344567777777653 3356777777665 567899999999999887778889999
Q ss_pred CCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEE
Q 003399 714 PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFD 793 (823)
Q Consensus 714 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~ 793 (823)
++|+.|+|++|.+.+ ++.....+|+|+.|+|++|. +..+|..++.+++|+.|++++|. +..+| +..+++|+.|+
T Consensus 278 ~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~ 351 (597)
T 3oja_B 278 QRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLT 351 (597)
T ss_dssp SSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEE
T ss_pred cCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEE
Confidence 999999999888776 56666779999999999984 66788788899999999999997 55565 67889999999
Q ss_pred ecCCC
Q 003399 794 CWWPQ 798 (823)
Q Consensus 794 l~~c~ 798 (823)
++++|
T Consensus 352 l~~N~ 356 (597)
T 3oja_B 352 LSHND 356 (597)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 99987
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=4.3e-25 Score=265.10 Aligned_cols=344 Identities=16% Similarity=0.079 Sum_probs=167.3
Q ss_pred CCceEEEEEEcCCcc-cccccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc-cccccccCcc-c
Q 003399 470 KNAKRLNAVERWDDF-ACLDDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-QYPSGIENLF-L 544 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~-~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-~lp~~i~~L~-~ 544 (823)
...+++ .+..+... ..+... +++|++|.+.++... ..++...+.++++|++|++++|.+. .+|..+.++. +
T Consensus 294 ~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~---~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 294 DTLTGL-DLSGNHFYGAVPPFFGSCSLLESLALSSNNFS---GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp TTCSEE-ECCSSEEEECCCGGGGGCTTCCEEECCSSEEE---EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred CcCCEE-ECcCCcCCCccchHHhcCCCccEEECCCCccc---CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 456666 66655443 222222 677777777766542 1234455777777888888777765 6666666665 5
Q ss_pred cceeeccCCCCc-ccchhhhhc--CCCccEEeCCCCccc-ccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceee
Q 003399 545 LRYLKLNIPSLK-SLPSSLLSN--LLNLYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFIS 620 (823)
Q Consensus 545 Lr~L~L~~~~i~-~lp~~i~~~--L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~ 620 (823)
|++|++++|.+. .+|+.+ +. +.+|++|++++|.+. .+|..+.++++|++|++++|.+....+..++++++|+.++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp CSEEECCSSEEEEECCTTT-TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CcEEEccCCCcCCCcChhh-hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 666666665544 233333 33 444555555555444 3344455555555555555544433333444444444444
Q ss_pred ccCCC--cccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC----------CCCCCcEEeeCCc--
Q 003399 621 ALHPC--CCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES----------KMPRLSKIALAEY-- 686 (823)
Q Consensus 621 ~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~L~l~~~-- 686 (823)
+..+. ..++..++.+++|+.|+++++. ....+|..+.++++|+.|++++|. ..++|+.|.+.++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCc--ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 44211 1222224444444444444442 222334444444444444444432 1233444444433
Q ss_pred --------CcccCccEeEeecccCCCCCcc--------------------------------------------------
Q 003399 687 --------LFPHSLTHLSFSNTVLMDDPMP-------------------------------------------------- 708 (823)
Q Consensus 687 --------~~~~~L~~L~L~~~~l~~~~~~-------------------------------------------------- 708 (823)
..+++|+.|++++|.+.+..+.
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 2344555555555544322221
Q ss_pred --------------------cccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEE
Q 003399 709 --------------------TLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECL 768 (823)
Q Consensus 709 --------------------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L 768 (823)
.++.+++|+.|+|++|.+.+ .+|..++.+++|+.|+|++|.....+|..++.+++|+.|
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccc-cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 12234555566666555554 345555556666666666654334555556666666666
Q ss_pred EeecCCCCCCCchhccCCCCCcEEEecCCC---------------------------HHHHHHhcccCCcceeeeecccC
Q 003399 769 IINPCAYLKKMPEQLWCIKSLNKFDCWWPQ---------------------------PELRQKLREFEDKEQYGVQLYPY 821 (823)
Q Consensus 769 ~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~---------------------------~~~~~~~~~~~~~~~~~i~~ip~ 821 (823)
++++|.....+|..+.++++|+.|++++|+ ..+ ..+....+++|++|+|+|+
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~~~~~~~~~~~~~~~ 764 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDPSNADGYAHHQRSHH 764 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCSCC------------
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCCCccCCCCCCCCccc
Confidence 666665555566666666666666665542 111 1345567999999999997
Q ss_pred C
Q 003399 822 G 822 (823)
Q Consensus 822 ~ 822 (823)
+
T Consensus 765 ~ 765 (768)
T 3rgz_A 765 H 765 (768)
T ss_dssp -
T ss_pred c
Confidence 5
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=3.1e-24 Score=256.17 Aligned_cols=276 Identities=17% Similarity=0.174 Sum_probs=129.1
Q ss_pred HHhcCCCcceEEEccCCC-Cc--cccccccCcc-------ccceeeccCCCCcccch--hhhhcCCCccEEeCCCCcccc
Q 003399 514 KIYGMFKLLRVLDLGSLV-LI--QYPSGIENLF-------LLRYLKLNIPSLKSLPS--SLLSNLLNLYTLDMPFSYIDH 581 (823)
Q Consensus 514 ~~~~~~~~LrvL~L~~~~-l~--~lp~~i~~L~-------~Lr~L~L~~~~i~~lp~--~i~~~L~~L~~L~L~~~~l~~ 581 (823)
..|.++++|++|+|++|. +. .+|..++++. +|++|+|++|.+..+|. .+ +++++|++|+|++|.+..
T Consensus 509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCB
T ss_pred HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCccc
Confidence 344455555555555554 44 2444444443 55555555555555554 44 555555555555554444
Q ss_pred cchhhcCCCCCceeeccCcccCCCCCCCcCCCcc-cceeeccC-CCcccccccCCCC--ccceEEeecccccc-hhhHHH
Q 003399 582 TADEFWKMNKLRHLNFGSITLPAHPGKYCGSLEN-LNFISALH-PCCCTEDILGRLP--NLRNLRIQGDLSYN-QSLLSK 656 (823)
Q Consensus 582 lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~-L~~l~~~~-~~~~~~~~l~~l~--~L~~L~i~~~~~~~-~~~l~~ 656 (823)
+| .++++++|++|++++|.+. ..+..++++.. |+.+++.. ....++..+..++ +|+.|+++++.-.. ...++.
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 44 4455555555555555444 11114444444 44444441 1112222233332 24555554442000 001111
Q ss_pred hhc--CCCCCcEEEeecCC----------CCCCCcEEeeCCc----------C-------cccCccEeEeecccCCCCCc
Q 003399 657 SLC--RLSCLESLKLANES----------KMPRLSKIALAEY----------L-------FPHSLTHLSFSNTVLMDDPM 707 (823)
Q Consensus 657 ~l~--~l~~L~~L~l~~~~----------~~~~L~~L~l~~~----------~-------~~~~L~~L~L~~~~l~~~~~ 707 (823)
.+. .+++|+.|++++|. .+++|+.|.+.++ . .+++|+.|+|++|.+. ..+
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 111 12245555555432 2344555555443 0 1115666666666554 344
Q ss_pred cccc--CCCCCCeEEeecCccCCccccccCCCCCcccEEeeec------CCCCcceeecccccccccEEEeecCCCCCCC
Q 003399 708 PTLE--KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKS------MLWLEEWTMGNAAMPKLECLIINPCAYLKKM 779 (823)
Q Consensus 708 ~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~l 779 (823)
..+. .+++|+.|+|++|.+.+ ++..+..+++|+.|+|++ |.....+|..++.+++|+.|++++|.. +.+
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~I 821 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKV 821 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred HHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Ccc
Confidence 4444 56666666666555554 444455566666666654 222334455555566666666666653 555
Q ss_pred chhccCCCCCcEEEecCCC
Q 003399 780 PEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 780 p~~l~~l~~L~~L~l~~c~ 798 (823)
|..+. ++|+.|++++|+
T Consensus 822 p~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 822 DEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CSCCC--SSSCEEECCSCT
T ss_pred CHhhc--CCCCEEECCCCC
Confidence 55433 466666666665
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=238.42 Aligned_cols=300 Identities=20% Similarity=0.193 Sum_probs=233.0
Q ss_pred cccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhh
Q 003399 486 CLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLS 564 (823)
Q Consensus 486 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 564 (823)
.+....++++.|.+.++... ...+..|.++++|++|+|++|.+..+ |..++++.+|++|+|++|.+..+|...++
T Consensus 26 ip~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 26 VPEGIPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp CCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCCCCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 33444778899999887763 34456789999999999999998865 77899999999999999999999987668
Q ss_pred cCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-Cc-ccccccCCCCccceE
Q 003399 565 NLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CC-CTEDILGRLPNLRNL 641 (823)
Q Consensus 565 ~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~-~~~~~l~~l~~L~~L 641 (823)
++++|++|+|++|.+..+ |..+.++++|++|++++|.+.......++++.+|+.+++..+ .. .....+..+++|+.|
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 999999999999988877 567899999999999999877654447777888888887732 12 222337888999999
Q ss_pred EeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEe
Q 003399 642 RIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKL 721 (823)
Q Consensus 642 ~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 721 (823)
++.++. .....+..+..+++|+.|+++++ +.+..+.... ....+|++|++++|.+.......+..+++|+.|+|
T Consensus 182 ~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~---~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 182 RLRHLN--INAIRDYSFKRLYRLKVLEISHW---PYLDTMTPNC-LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp EEESCC--CCEECTTCSCSCTTCCEEEEECC---TTCCEECTTT-TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred eCCCCc--CcEeChhhcccCcccceeeCCCC---ccccccCccc-ccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence 998875 22223346778889999999854 2333332221 23458999999999987655567899999999999
Q ss_pred ecCccCCccccccCCCCCcccEEeeecCCCCcce-eecccccccccEEEeecCCCCCCCch-hccCCCCCcEEEecCCC
Q 003399 722 KQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-TMGNAAMPKLECLIINPCAYLKKMPE-QLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L~~L~l~~c~ 798 (823)
++|.+.. ..+..+..+++|+.|+|+++. +..+ +..+..+++|+.|++++|. ++.+|. .+..+++|+.|+++++|
T Consensus 256 s~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 256 SYNPIST-IEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CSSCCCE-ECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CCCcCCc-cChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 9888765 334456789999999999985 5544 5667889999999999996 666665 57889999999998765
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.4e-23 Score=250.35 Aligned_cols=273 Identities=14% Similarity=0.126 Sum_probs=201.5
Q ss_pred hcCCCcceEEEccCCCCc-cccccccCccccceeeccCCC-Ccc--cchhhhhcCC-------CccEEeCCCCcccccch
Q 003399 516 YGMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPS-LKS--LPSSLLSNLL-------NLYTLDMPFSYIDHTAD 584 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~-~lp~~i~~L~~Lr~L~L~~~~-i~~--lp~~i~~~L~-------~L~~L~L~~~~l~~lp~ 584 (823)
|.++++|++|+|++|.+. .+|..++++++|++|+|++|. +.. +|..+ +++. +|++|+|++|.+..+|.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCC
Confidence 338888888888888744 778888888888888888887 774 78776 6665 88888888888888887
Q ss_pred --hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccC-CCcccccccCCCCc-cceEEeecccccchhhHHHhhcC
Q 003399 585 --EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALH-PCCCTEDILGRLPN-LRNLRIQGDLSYNQSLLSKSLCR 660 (823)
Q Consensus 585 --~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~-L~~L~i~~~~~~~~~~l~~~l~~ 660 (823)
.+.++++|++|++++|.+. .+|.++++.+|+.+++.. ....++..+..+++ |+.|+++++. ...+|..+..
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~---L~~lp~~~~~ 640 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK---LKYIPNIFNA 640 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC---CCSCCSCCCT
T ss_pred hhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC---CCcCchhhhc
Confidence 7888888888888888877 344777888888888873 23345545777887 8888888874 3356666665
Q ss_pred CCC--CcEEEeecCC---------------CCCCCcEEeeCCc----------CcccCccEeEeecccCCCCCccccc--
Q 003399 661 LSC--LESLKLANES---------------KMPRLSKIALAEY----------LFPHSLTHLSFSNTVLMDDPMPTLE-- 711 (823)
Q Consensus 661 l~~--L~~L~l~~~~---------------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~-- 711 (823)
++. |+.|++++|. ..++|+.|.+.++ ..+++|+.|+|++|.+. ..+..+.
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~ 719 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP 719 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcc
Confidence 543 8888888753 1136777777776 24678888888888775 3333332
Q ss_pred ------CCCCCCeEEeecCccCCccccccCC--CCCcccEEeeecCCCCcceeecccccccccEEEeec------CCCCC
Q 003399 712 ------KLPLLQVLKLKQNSYSGRKLTCGSY--GFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINP------CAYLK 777 (823)
Q Consensus 712 ------~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~------C~~l~ 777 (823)
++++|+.|+|++|.+. .++..+. .+++|+.|+|++|. +..+|..++.+++|+.|++++ |....
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccc
Confidence 2348888888888776 3555555 78888888888874 556777778888888888876 44456
Q ss_pred CCchhccCCCCCcEEEecCCC
Q 003399 778 KMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 778 ~lp~~l~~l~~L~~L~l~~c~ 798 (823)
.+|..+.++++|+.|++++|.
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSC
T ss_pred cChHHHhcCCCCCEEECCCCC
Confidence 778888888888888888876
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=7.4e-24 Score=248.51 Aligned_cols=263 Identities=18% Similarity=0.244 Sum_probs=153.4
Q ss_pred CcceEEEccCCCCccccc--cccCccccceeeccCCCCc-ccchhhhhcCCCccEEeCCCCcccccchhhcCCCC-Ccee
Q 003399 520 KLLRVLDLGSLVLIQYPS--GIENLFLLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNK-LRHL 595 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~--~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~-L~~L 595 (823)
++|++|++++|.+..+|. .++++.+|++|++++|.+. .+| .+ +++++|++|++++|.+..+|..+..+++ |++|
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEE
Confidence 444555555444444444 4444455555555544444 444 33 4444555555555544444444445554 5555
Q ss_pred eccCcccCCCCCCCcCC--CcccceeeccCCC--cccccccC-------CCCccceEEeecccccchhhHHHh-hcCCCC
Q 003399 596 NFGSITLPAHPGKYCGS--LENLNFISALHPC--CCTEDILG-------RLPNLRNLRIQGDLSYNQSLLSKS-LCRLSC 663 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~--L~~L~~l~~~~~~--~~~~~~l~-------~l~~L~~L~i~~~~~~~~~~l~~~-l~~l~~ 663 (823)
++++|.+.. .+..++. +.+|+.+++..+. ...+..+. .+++|+.|+++++. ...+|.. +..+++
T Consensus 383 ~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~---l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 383 SFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ---ISKFPKELFSTGSP 458 (636)
T ss_dssp ECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC---CCSCCTHHHHTTCC
T ss_pred EccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc---cCcCCHHHHccCCC
Confidence 555544441 1112222 2244444444211 11111122 34455555555442 1122222 223455
Q ss_pred CcEEEeecCCCCCCCcEEeeCCc-------CcccCccEeEeecccCCCCCccccc--CCCCCCeEEeecCccCCcccccc
Q 003399 664 LESLKLANESKMPRLSKIALAEY-------LFPHSLTHLSFSNTVLMDDPMPTLE--KLPLLQVLKLKQNSYSGRKLTCG 734 (823)
Q Consensus 664 L~~L~l~~~~~~~~L~~L~l~~~-------~~~~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~ 734 (823)
|+.|++++| .+..+....+ ..+++|+.|+|++|.+. ..+..+. .+++|+.|+|++|.+.+ +|..
T Consensus 459 L~~L~Ls~N----~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~ 531 (636)
T 4eco_A 459 LSSINLMGN----MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQ 531 (636)
T ss_dssp CSEEECCSS----CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCG
T ss_pred CCEEECCCC----CCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChh
Confidence 555555443 1221111111 12238999999999986 5667776 99999999999998886 6777
Q ss_pred CCCCCcccEEeeec------CCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 735 SYGFPNLKVLHLKS------MLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 735 ~~~~~~L~~L~L~~------~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+..+++|+.|+|++ +.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 78899999999954 444567788888999999999999985 88998755 899999999996
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=244.99 Aligned_cols=325 Identities=19% Similarity=0.112 Sum_probs=209.6
Q ss_pred CCCCceEEEEEEcCCcccccc-cc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCcc
Q 003399 468 SGKNAKRLNAVERWDDFACLD-DY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLF 543 (823)
Q Consensus 468 ~~~~~r~l~sl~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~ 543 (823)
.+..+++| .+.++....... .. +++|++|.+.++... .+.+..|.++++|++|+|++|.+..+| ..++++.
T Consensus 26 l~~~l~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNL-DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEE-ECCSCCCCEECTTTTTTCSSCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEE-EccCCccCccChhHhhCCCCceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 45567888 777766544322 22 788888888877642 344566778888888888888877554 5677888
Q ss_pred ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccc--cchhhcCCCCCceeeccCcccCCCCCCCcCC---------
Q 003399 544 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHLNFGSITLPAHPGKYCGS--------- 612 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~--------- 612 (823)
+|++|++++|.+..+|...++++++|++|++++|.+.. +|..++++++|++|++++|.+.......++.
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 88888888888777776323788888888888887764 5777888888888888777554321111111
Q ss_pred --------------------------------------------------------------------------------
Q 003399 613 -------------------------------------------------------------------------------- 612 (823)
Q Consensus 613 -------------------------------------------------------------------------------- 612 (823)
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence
Q ss_pred --------------------CcccceeeccC-CCccccccc---------------------------------------
Q 003399 613 --------------------LENLNFISALH-PCCCTEDIL--------------------------------------- 632 (823)
Q Consensus 613 --------------------L~~L~~l~~~~-~~~~~~~~l--------------------------------------- 632 (823)
+..|+.+.+.. ....++..+
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 11111111110 000011101
Q ss_pred ---CCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC---------CCCCCcEEeeCCc-----------Ccc
Q 003399 633 ---GRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES---------KMPRLSKIALAEY-----------LFP 689 (823)
Q Consensus 633 ---~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~---------~~~~L~~L~l~~~-----------~~~ 689 (823)
..+++|+.|+++++.-......+..+..+++|++|++++|. ..++|+.|.+.++ ..+
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 12223333333332111111113455566666666666542 4566777776654 345
Q ss_pred cCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce-eecccccccccEE
Q 003399 690 HSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-TMGNAAMPKLECL 768 (823)
Q Consensus 690 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~lp~L~~L 768 (823)
++|++|++++|.+....+..+..+++|+.|+|++|.+.+..++..+..+++|+.|++++|. +..+ |..++.+++|+.|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEE
Confidence 7788888888877666777788889999999988877644567778889999999999985 4544 6677889999999
Q ss_pred EeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 769 IINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 769 ~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
++++|......|..+.++++|+.|+++++|
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999996444334568899999999999854
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.7e-23 Score=224.54 Aligned_cols=299 Identities=16% Similarity=0.143 Sum_probs=219.2
Q ss_pred CCceEEEEEEcCCcccccccc-CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCcccccee
Q 003399 470 KNAKRLNAVERWDDFACLDDY-DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 548 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L 548 (823)
..++++ .+.++.....+... +++|++|.+.++.... .. . +..+++|++|++++|.+..+| .+..+.+|++|
T Consensus 44 ~~L~~L-~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~----~~-~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKL-VVAGEKVASIQGIEYLTNLEYLNLNGNQITD----IS-P-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp TTCSEE-ECCSSCCCCCTTGGGCTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred ccccEE-EEeCCccccchhhhhcCCccEEEccCCcccc----ch-h-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 456777 77766554443323 8888888888876532 22 2 788888888888888888775 48888888888
Q ss_pred eccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccC-CCcc
Q 003399 549 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALH-PCCC 627 (823)
Q Consensus 549 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~-~~~~ 627 (823)
++++|.+..+|. + ..+++|++|++++|.....+..+..+++|++|++++|.+.. .+.++++++|+.+++.. ....
T Consensus 116 ~l~~n~i~~~~~-~-~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 116 YLNEDNISDISP-L-ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp ECTTSCCCCCGG-G-TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECTTSCCCC
T ss_pred ECcCCcccCchh-h-ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC--chhhccCCCCCEEEccCCcccc
Confidence 888888888877 5 88888888888888443344448888888888888887654 22366777788887773 2334
Q ss_pred cccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCc
Q 003399 628 TEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPM 707 (823)
Q Consensus 628 ~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~ 707 (823)
+.. +..+++|+.|.++++. ...++. +..+++|+.|++++| .+..+.. ...+++|++|++++|.+.. .
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~---l~~~~~-~~~~~~L~~L~l~~n----~l~~~~~--~~~l~~L~~L~l~~n~l~~--~ 258 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQ---ITDITP-VANMTRLNSLKIGNN----KITDLSP--LANLSQLTWLEIGTNQISD--I 258 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSC---CCCCGG-GGGCTTCCEEECCSS----CCCCCGG--GTTCTTCCEEECCSSCCCC--C
T ss_pred ccc-ccCCCccceeecccCC---CCCCch-hhcCCcCCEEEccCC----ccCCCcc--hhcCCCCCEEECCCCccCC--C
Confidence 444 7778888888888774 222222 677788888888765 2222221 3568899999999998754 3
Q ss_pred ccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCC
Q 003399 708 PTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIK 787 (823)
Q Consensus 708 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~ 787 (823)
+.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|......+..++.+|+|+.|++++|+ +..++. +..++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~ 333 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLS 333 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCT
T ss_pred hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhh
Confidence 6788999999999998877762 346778999999999986444445557789999999999998 555554 78899
Q ss_pred CCcEEEecCCC
Q 003399 788 SLNKFDCWWPQ 798 (823)
Q Consensus 788 ~L~~L~l~~c~ 798 (823)
+|+.|++++|+
T Consensus 334 ~L~~L~l~~N~ 344 (347)
T 4fmz_A 334 KMDSADFANQV 344 (347)
T ss_dssp TCSEESSSCC-
T ss_pred ccceeehhhhc
Confidence 99999999987
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.3e-23 Score=233.73 Aligned_cols=322 Identities=15% Similarity=0.102 Sum_probs=245.9
Q ss_pred CCCCceEEEEEEcCCcccc-cccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCcc
Q 003399 468 SGKNAKRLNAVERWDDFAC-LDDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLF 543 (823)
Q Consensus 468 ~~~~~r~l~sl~~~~~~~~-~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~ 543 (823)
.+..+++| .+.++..... +... +++|+.|.+.++... ..+.+..|.++++|++|+|++|.+..+ |..++++.
T Consensus 28 l~~~l~~L-~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYV-DLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEE-ECCSSCCCEECTTTTSSCTTCCEEECCCCSTT---CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEE-EecCCccCcCChhHhccCccccEEECcCCccc---ceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 55778999 8887766543 3333 899999999887652 234456789999999999999998855 78899999
Q ss_pred ccceeeccCCCCcc-cchh-hhhcCCCccEEeCCCCccccc-chh-hcCCCCCceeeccCcccCCCCCCCcCCC--cccc
Q 003399 544 LLRYLKLNIPSLKS-LPSS-LLSNLLNLYTLDMPFSYIDHT-ADE-FWKMNKLRHLNFGSITLPAHPGKYCGSL--ENLN 617 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~-lp~~-i~~~L~~L~~L~L~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~~~~i~~L--~~L~ 617 (823)
+|++|++++|.+.. .|.. .++++++|++|++++|.+..+ |.. +.++++|++|++++|.+.......++++ ..|.
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999999885 3333 238999999999999999887 555 8899999999999998877555455554 5677
Q ss_pred eeeccCCC-cccc---------cccCCCCccceEEeecccccchhhHHHhhcC---CCCCcEEEeecCC-----------
Q 003399 618 FISALHPC-CCTE---------DILGRLPNLRNLRIQGDLSYNQSLLSKSLCR---LSCLESLKLANES----------- 673 (823)
Q Consensus 618 ~l~~~~~~-~~~~---------~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~---l~~L~~L~l~~~~----------- 673 (823)
.+.+.... ..+. ..+..+++|+.|+++++. .....+..+.. .++|+.|+++.+.
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 77766221 1111 113456889999999885 33444444433 3778888877541
Q ss_pred -----------CCCCCcEEeeCCc----------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCcccc
Q 003399 674 -----------KMPRLSKIALAEY----------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLT 732 (823)
Q Consensus 674 -----------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 732 (823)
..++++.|.+.++ ..+++|+.|++++|.+....+..++.+++|+.|+|++|.+.+ ..+
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~ 340 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDS 340 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cCh
Confidence 1246777777665 567899999999999887777789999999999999888754 445
Q ss_pred ccCCCCCcccEEeeecCCCCcce-eecccccccccEEEeecCCCCCCCch-hccCCCCCcEEEecCCC
Q 003399 733 CGSYGFPNLKVLHLKSMLWLEEW-TMGNAAMPKLECLIINPCAYLKKMPE-QLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 733 ~~~~~~~~L~~L~L~~~~~l~~~-~~~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L~~L~l~~c~ 798 (823)
..+..+++|+.|+|++|. +..+ +..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++++
T Consensus 341 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 667889999999999985 5555 6678899999999999986 566665 56899999999998754
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=6.2e-24 Score=249.17 Aligned_cols=273 Identities=15% Similarity=0.147 Sum_probs=185.1
Q ss_pred CCCcceEEEccCCCCc-cccccccCccccceeeccCCC-Cc--ccchhhhhcC------CCccEEeCCCCcccccch--h
Q 003399 518 MFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPS-LK--SLPSSLLSNL------LNLYTLDMPFSYIDHTAD--E 585 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~-~lp~~i~~L~~Lr~L~L~~~~-i~--~lp~~i~~~L------~~L~~L~L~~~~l~~lp~--~ 585 (823)
++++|++|+|++|.+. .+|..++++++|++|++++|. +. .+|..+ +++ ++|++|++++|.+..+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 6677777777776644 566667777777777777766 65 366666 555 677777777776666666 6
Q ss_pred hcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-CcccccccCCCCc-cceEEeecccccchhhHHHhhcCCC-
Q 003399 586 FWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCCTEDILGRLPN-LRNLRIQGDLSYNQSLLSKSLCRLS- 662 (823)
Q Consensus 586 i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~-L~~L~i~~~~~~~~~~l~~~l~~l~- 662 (823)
++++++|++|++++|.+.+..+ .++++.+|+.+++..+ ...++..+..+++ |+.|+++++. ...+|..+..++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~---l~~lp~~~~~~~l 401 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK---LKYIPNIFDAKSV 401 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC---CSSCCSCCCTTCS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc---Ccccchhhhhccc
Confidence 6777777777777666653222 5555666666666522 2233333556666 6667666663 224555554433
Q ss_pred -CCcEEEeecCC-----------------CCCCCcEEeeCCc----------CcccCccEeEeecccCCCCCcccccC--
Q 003399 663 -CLESLKLANES-----------------KMPRLSKIALAEY----------LFPHSLTHLSFSNTVLMDDPMPTLEK-- 712 (823)
Q Consensus 663 -~L~~L~l~~~~-----------------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~-- 712 (823)
+|+.|++++|. ..++|+.|.+.++ ..+++|+.|+|++|.+.......+..
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 66666666542 1125556666554 34789999999999886333223332
Q ss_pred -----CCCCCeEEeecCccCCccccccCC--CCCcccEEeeecCCCCcceeecccccccccEEEeec------CCCCCCC
Q 003399 713 -----LPLLQVLKLKQNSYSGRKLTCGSY--GFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINP------CAYLKKM 779 (823)
Q Consensus 713 -----l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~------C~~l~~l 779 (823)
+++|+.|+|++|.+. .++.... .+++|+.|+|++|. +..+|..++.+++|+.|++++ |.....+
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred ccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccC
Confidence 339999999988887 3566665 89999999999985 566888888999999999954 5556788
Q ss_pred chhccCCCCCcEEEecCCC
Q 003399 780 PEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 780 p~~l~~l~~L~~L~l~~c~ 798 (823)
|..+.++++|+.|++++|.
T Consensus 559 p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CTTGGGCSSCCEEECCSSC
T ss_pred hHHHhcCCCCCEEECCCCc
Confidence 9999999999999999987
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=6.8e-23 Score=231.67 Aligned_cols=301 Identities=19% Similarity=0.174 Sum_probs=223.6
Q ss_pred CCceEEEEEEcCCcccccccc-CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCcccccee
Q 003399 470 KNAKRLNAVERWDDFACLDDY-DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 548 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L 548 (823)
..++++ .+.+......+... +++|+.|.+.++.... .. . +.++++|++|++++|.+..++. ++++.+|++|
T Consensus 46 ~~l~~L-~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~----~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTL-QADRLGIKSIDGVEYLNNLTQINFSNNQLTD----IT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEE-ECCSSCCCCCTTGGGCTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEE-ecCCCCCccCcchhhhcCCCEEECCCCccCC----ch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 457778 77766555443333 8888999888876532 22 2 7888889999998888887776 8888899999
Q ss_pred eccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-Ccc
Q 003399 549 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCC 627 (823)
Q Consensus 549 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~~ 627 (823)
++++|.+..+|+ + +++++|++|++++|.+..+|. +..+++|++|++++ .+.. .+.++++++|+.+++... ...
T Consensus 118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-cccC--chhhccCCCCCEEECcCCcCCC
Confidence 999888888876 5 888899999998888887764 88888999998863 3322 235777888888888733 333
Q ss_pred cccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC--------CCCCCcEEeeCCc--------CcccC
Q 003399 628 TEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES--------KMPRLSKIALAEY--------LFPHS 691 (823)
Q Consensus 628 ~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l~~~--------~~~~~ 691 (823)
+.. +..+++|+.|+++++. ...++. +..+++|+.|++++|. ..++|+.|.+.++ ..+++
T Consensus 192 ~~~-l~~l~~L~~L~l~~n~---l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 266 (466)
T 1o6v_A 192 ISV-LAKLTNLESLIATNNQ---ISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK 266 (466)
T ss_dssp CGG-GGGCTTCSEEECCSSC---CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred Chh-hccCCCCCEEEecCCc---cccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCC
Confidence 444 7888999999998874 222222 6678889999988763 4567788877765 45678
Q ss_pred ccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEee
Q 003399 692 LTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIIN 771 (823)
Q Consensus 692 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~ 771 (823)
|+.|++++|.+... +.+..+++|+.|++++|.+.+. +. +..+++|+.|++++|. +..++. ...+++|+.|+++
T Consensus 267 L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 267 LTELKLGANQISNI--SPLAGLTALTNLELNENQLEDI--SP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp CSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECC
T ss_pred CCEEECCCCccCcc--ccccCCCccCeEEcCCCcccCc--hh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECC
Confidence 88888888887543 2378888888888888877652 22 5678899999999884 554443 5788999999999
Q ss_pred cCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 772 PCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 772 ~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+|+ +..++ .+.++++|+.|++++|+
T Consensus 340 ~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 985 55554 57889999999999886
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.4e-23 Score=251.99 Aligned_cols=318 Identities=19% Similarity=0.148 Sum_probs=187.3
Q ss_pred CCceEEEEEEcCCcccccccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc-cccccccCccccc
Q 003399 470 KNAKRLNAVERWDDFACLDDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-QYPSGIENLFLLR 546 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-~lp~~i~~L~~Lr 546 (823)
.+.++| .+..+......... +++|+.|.+.++... ...+..+.++++|++|++++|.+. .+|.. .+.+|+
T Consensus 200 ~~L~~L-~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 200 VNLEFL-DVSSNNFSTGIPFLGDCSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCCEE-ECCSSCCCSCCCBCTTCCSCCEEECCSSCCC----SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred CcCCEE-ECcCCcCCCCCcccccCCCCCEEECcCCcCC----CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 445555 55554433221112 566666666665542 234455666666666666666654 22321 455555
Q ss_pred eeeccCCCCc-ccchhhhhc-CCCccEEeCCCCccc-ccchhhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeecc
Q 003399 547 YLKLNIPSLK-SLPSSLLSN-LLNLYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 622 (823)
Q Consensus 547 ~L~L~~~~i~-~lp~~i~~~-L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~ 622 (823)
+|++++|.+. .+|..+ .+ +++|++|++++|.+. .+|..++++++|++|++++|.+.+..+. .++++++|+.+++.
T Consensus 273 ~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp EEECCSSEEEESCCCCS-CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred EEECcCCccCCccCHHH-HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 5555555554 445444 33 255555555555444 3345555555555555555554422222 24445555555544
Q ss_pred CCCc--ccccccCCCC-ccceEEeecccccchhhHHHhhcC--CCCCcEEEeecCC----------CCCCCcEEeeCCc-
Q 003399 623 HPCC--CTEDILGRLP-NLRNLRIQGDLSYNQSLLSKSLCR--LSCLESLKLANES----------KMPRLSKIALAEY- 686 (823)
Q Consensus 623 ~~~~--~~~~~l~~l~-~L~~L~i~~~~~~~~~~l~~~l~~--l~~L~~L~l~~~~----------~~~~L~~L~l~~~- 686 (823)
.+.. .++..+..++ +|+.|+++++. ....++..+.. +++|+.|++++|. ..++|+.|.+.++
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNN--FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSE--EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCC--cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 2211 1222233333 44444444442 11122222222 3444444444321 2234444444433
Q ss_pred ---------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee
Q 003399 687 ---------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM 757 (823)
Q Consensus 687 ---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 757 (823)
..+++|+.|++++|.+.+..+..++.+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.....+|.
T Consensus 430 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 456788888888888877788888888889999988888776 3566677889999999998875557788
Q ss_pred cccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 758 GNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 758 ~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
.++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 88889999999999998777888889999999999998764
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=5.8e-23 Score=235.94 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=81.8
Q ss_pred CCCceEEEEEEcCCcccccc-cc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCcccc
Q 003399 469 GKNAKRLNAVERWDDFACLD-DY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLL 545 (823)
Q Consensus 469 ~~~~r~l~sl~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~L 545 (823)
+..++++ .+.++....... .. +++|++|.+.++... ...+..|.++++|++|+|++|.+..+|.. .+.+|
T Consensus 20 ~~~L~~L-~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 20 SQKTTIL-NISQNYISELWTSDILSLSKLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp CTTCSEE-ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred cccccEE-ECCCCcccccChhhccccccccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 3567777 777665544322 22 677777777776552 34455677777777777777777777665 67777
Q ss_pred ceeeccCCCCcc--cchhhhhcCCCccEEeCCCCcccccchhhcCCCCC--ceeeccCccc
Q 003399 546 RYLKLNIPSLKS--LPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKL--RHLNFGSITL 602 (823)
Q Consensus 546 r~L~L~~~~i~~--lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L--~~L~l~~~~~ 602 (823)
++|++++|.+.. +|..+ +++++|++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 93 ~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred cEEeccCCccccccchhhh-ccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 777777777764 45565 777777777777776655 345566666 7777777666
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.6e-22 Score=228.58 Aligned_cols=302 Identities=19% Similarity=0.173 Sum_probs=218.7
Q ss_pred CCCceEEEEEEcCCcccccccc-CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccce
Q 003399 469 GKNAKRLNAVERWDDFACLDDY-DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 547 (823)
Q Consensus 469 ~~~~r~l~sl~~~~~~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~ 547 (823)
....++| .+.++.....+... +++|+.|.+.++.... .. . +.++++|++|++++|.+..+|. +.++++|++
T Consensus 67 l~~L~~L-~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~----~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 67 LNNLTQI-NFSNNQLTDITPLKNLTKLVDILMNNNQIAD----IT-P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp CTTCCEE-ECCSSCCCCCGGGTTCTTCCEEECCSSCCCC----CG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hcCCCEE-ECCCCccCCchhhhccccCCEEECCCCcccc----Ch-h-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 4578889 88877665544433 8999999999887642 22 2 8999999999999999998876 999999999
Q ss_pred eeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-Cc
Q 003399 548 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CC 626 (823)
Q Consensus 548 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~ 626 (823)
|++++|.+..+|. + +++++|+.|+++ +.+..++. +.++++|++|++++|.+.. .+.+.++.+|+.+++... ..
T Consensus 139 L~l~~n~l~~~~~-~-~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 139 LELSSNTISDISA-L-SGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEEEECCCGG-G-TTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred EECCCCccCCChh-h-ccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCccc
Confidence 9999999888764 4 777777777774 33444433 6667777777777766544 234555666666666522 22
Q ss_pred ccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC--------CCCCCcEEeeCCc--------Cccc
Q 003399 627 CTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES--------KMPRLSKIALAEY--------LFPH 690 (823)
Q Consensus 627 ~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--------~~~~L~~L~l~~~--------~~~~ 690 (823)
.... ++.+++|+.|+++++. ...+ ..+..+++|+.|++++|. .+++|+.|.+.++ ..++
T Consensus 213 ~~~~-~~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~ 287 (466)
T 1o6v_A 213 DITP-LGILTNLDELSLNGNQ---LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 287 (466)
T ss_dssp CCGG-GGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred cccc-ccccCCCCEEECCCCC---cccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCC
Confidence 2223 5566667777766653 1122 245566666666666542 3456666666654 4678
Q ss_pred CccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEe
Q 003399 691 SLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLII 770 (823)
Q Consensus 691 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i 770 (823)
+|+.|++++|.+... +.++.+++|+.|+|++|.+.+.. + ...+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus 288 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l 360 (466)
T 1o6v_A 288 ALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS-P--VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSA 360 (466)
T ss_dssp TCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG-G--GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEEC
T ss_pred ccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCch-h--hccCccCCEeECCCCc-cCCch-hhccCCCCCEEeC
Confidence 999999999998543 34889999999999999887632 2 5689999999999984 66554 5778999999999
Q ss_pred ecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 771 NPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 771 ~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
++|......| +..+++|+.|++++|+
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCCccCccch--hhcCCCCCEEeccCCc
Confidence 9997544444 8899999999999986
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.8e-23 Score=242.20 Aligned_cols=131 Identities=15% Similarity=0.023 Sum_probs=78.9
Q ss_pred CCCCceEEEEEEcCCccccc-ccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCcc
Q 003399 468 SGKNAKRLNAVERWDDFACL-DDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLF 543 (823)
Q Consensus 468 ~~~~~r~l~sl~~~~~~~~~-~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~ 543 (823)
.+..+++| .+.++...... ... +++|++|.+.++... ...+..|.++++|++|+|++|.+..+ |..++++.
T Consensus 31 l~~~l~~L-~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECL-EFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEE-ECTTCCCSEECTTTSTTCTTCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEE-EccCCccCcCChhHhccCccceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 45567777 77766554432 222 677777777776542 23445566777777777777766533 55666677
Q ss_pred ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc-hhhcCCCCCceeeccCcccC
Q 003399 544 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLP 603 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~ 603 (823)
+|++|++++|.+..+++..++++++|++|++++|.+..++ ..+..+++|++|++++|.+.
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 7777777777666653222266666666666666665542 22333666666666665444
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1e-22 Score=236.06 Aligned_cols=104 Identities=22% Similarity=0.186 Sum_probs=73.6
Q ss_pred ccCccEeEeecccCCCCCc-ccccCCCCCCeEEeecCccCCccccccCCCC-CcccEEeeecCCCCcceeeccccccccc
Q 003399 689 PHSLTHLSFSNTVLMDDPM-PTLEKLPLLQVLKLKQNSYSGRKLTCGSYGF-PNLKVLHLKSMLWLEEWTMGNAAMPKLE 766 (823)
Q Consensus 689 ~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~lp~L~ 766 (823)
+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+. .+ ..+ ++|+.|++++| .++.+|.....+++|+
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~---~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~ 476 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS-VF---RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQ 476 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG-GG---SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCS
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc-hh---hhhcCcCCEEECCCC-cCcccChhhcCCCCCC
Confidence 4556666666665544222 2355566666666666655432 11 233 68999999887 5778888778999999
Q ss_pred EEEeecCCCCCCCchh-ccCCCCCcEEEecCCC
Q 003399 767 CLIINPCAYLKKMPEQ-LWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 767 ~L~i~~C~~l~~lp~~-l~~l~~L~~L~l~~c~ 798 (823)
.|++++|. ++.+|.. +..+++|+.|+++++|
T Consensus 477 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 477 ELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 99999986 6688887 8899999999999865
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.2e-22 Score=237.90 Aligned_cols=135 Identities=20% Similarity=0.130 Sum_probs=113.4
Q ss_pred ccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCCCccc-ch
Q 003399 483 DFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSL-PS 560 (823)
Q Consensus 483 ~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~ 560 (823)
....+....+++++|.+.++... ...+..|.++++|++|+|++|.+..+ |..++++++|++|+|++|.+..+ |.
T Consensus 23 l~~ip~~~~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 23 LSKVPDDIPSSTKNIDLSFNPLK----ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred cccCCCCCCCCcCEEECCCCCcC----EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 33333444789999999988763 45556789999999999999999876 66799999999999999999988 55
Q ss_pred hhhhcCCCccEEeCCCCcccccc-hhhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeecc
Q 003399 561 SLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 622 (823)
Q Consensus 561 ~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~ 622 (823)
.+ +++++|++|++++|.+..+| ..++++++|++|++++|.+.....| .++++++|+.+++.
T Consensus 99 ~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 99 SF-SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp SS-TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred hc-CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 55 99999999999999999886 6799999999999999998875555 78888888777765
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.3e-22 Score=237.60 Aligned_cols=273 Identities=18% Similarity=0.133 Sum_probs=193.2
Q ss_pred cceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeecc
Q 003399 521 LLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFG 598 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~ 598 (823)
.|+.|+++++.+..++. .++.+++|++|++++|.+..+|..+ +++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 56667777776665544 3777888888888888888888877 8888888888888877776 4567888888888888
Q ss_pred CcccCCCCCC-CcCCCcccceeeccCCC-ccc---ccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC
Q 003399 599 SITLPAHPGK-YCGSLENLNFISALHPC-CCT---EDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES 673 (823)
Q Consensus 599 ~~~~~~~~~~-~i~~L~~L~~l~~~~~~-~~~---~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 673 (823)
+|.+....++ .++++++|+.+++..+. ... ...++.+++|+.|+++++. .....+..+..+++|+.|++++|.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCc
Confidence 8876654444 57778888888877322 221 2237788888888888774 333445667788888888887753
Q ss_pred -----------CCCCCcEEeeCCc----------CcccCccEeEeecccCCCC---CcccccCCCCCCeEEeecCccCCc
Q 003399 674 -----------KMPRLSKIALAEY----------LFPHSLTHLSFSNTVLMDD---PMPTLEKLPLLQVLKLKQNSYSGR 729 (823)
Q Consensus 674 -----------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~~~~~~~ 729 (823)
..++|+.|.+.++ ..+++|++|++++|.+.+. .+..++.+++|+.|+|++|.+.+
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~- 490 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS- 490 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-
Confidence 2356777777665 3467788888888776542 22456777888888888776654
Q ss_pred cccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 730 KLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 730 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
..+..+..+++|+.|++++|......+..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 334556778888888888875444445566777888 88888887555555667788888999988865
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.1e-22 Score=218.57 Aligned_cols=279 Identities=17% Similarity=0.180 Sum_probs=226.4
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
++++++|.+.++.... + ..+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+ .++++|+
T Consensus 43 l~~L~~L~l~~~~i~~----~--~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----I--QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL-QNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCCCC----C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG-TTCTTCS
T ss_pred cccccEEEEeCCcccc----c--hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH-cCCCcCC
Confidence 7899999999877643 1 237889999999999999998887 999999999999999999986 45 9999999
Q ss_pred EEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-CcccccccCCCCccceEEeeccccc
Q 003399 571 TLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIQGDLSY 649 (823)
Q Consensus 571 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~i~~~~~~ 649 (823)
+|++++|.+..+|. +..+++|++|++++|..... .+.++++.+|+.+.+... ...+.. +..+++|+.|+++++.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-- 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-- 188 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--
Confidence 99999999999887 89999999999999854432 335788888888888833 334444 7889999999999884
Q ss_pred chhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCc
Q 003399 650 NQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGR 729 (823)
Q Consensus 650 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 729 (823)
...++. +..+++|+.|+++++ .+..+.. ...+++|++|++++|.+... +.+..+++|+.|++++|.+...
T Consensus 189 -l~~~~~-~~~l~~L~~L~l~~n----~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 189 -IEDISP-LASLTSLHYFTAYVN----QITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp -CCCCGG-GGGCTTCCEEECCSS----CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred -cccccc-ccCCCccceeecccC----CCCCCch--hhcCCcCCEEEccCCccCCC--cchhcCCCCCEEECCCCccCCC
Confidence 333333 778899999999875 2222211 35688999999999997543 3389999999999999887762
Q ss_pred cccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 730 KLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 730 ~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
..+..+++|+.|++++| .+..++ .+..+++|+.|++++|+.....|..+..+++|+.|++++|+
T Consensus 259 ---~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ---hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 34678999999999998 466664 46789999999999998655667788999999999999997
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.1e-22 Score=224.36 Aligned_cols=271 Identities=14% Similarity=0.140 Sum_probs=226.8
Q ss_pred CCCcceEEEccCCCCcccccc-ccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc-hhhcCCCCCcee
Q 003399 518 MFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHL 595 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L 595 (823)
.+++|++|+++++.+..+|.. +..+++|++|++++|.+..+|+..++++++|++|++++|.+..+| ..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468899999999999999876 578999999999999999988744499999999999999999885 458999999999
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCC--cccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES 673 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 673 (823)
++++|.+.......++++.+|+.+++..+. ...+..++.+++|+.|+++++. ...+ .+..+++|+.|+++++.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR---LTHV--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC---CSBC--CGGGCTTCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc---CCcc--ccccccccceeeccccc
Confidence 999998875322246889999999998432 2223348899999999999885 2222 35677899999999864
Q ss_pred -----CCCCCcEEeeCCc-------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcc
Q 003399 674 -----KMPRLSKIALAEY-------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNL 741 (823)
Q Consensus 674 -----~~~~L~~L~l~~~-------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 741 (823)
.+++++.|.+.++ ..+++|+.|++++|.+.. .+.++.+++|+.|+|++|.+.+ ..+..+..+++|
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L 274 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRL 274 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSC
T ss_pred ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCC-cChhHccccccC
Confidence 4568899988876 346799999999999864 4789999999999999988775 346677889999
Q ss_pred cEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 742 KVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 742 ~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+.|+++++ .+..++.....+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 275 ~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 275 ERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 99999997 578888878889999999999995 77889888899999999999987
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=5.2e-23 Score=220.90 Aligned_cols=232 Identities=21% Similarity=0.183 Sum_probs=187.2
Q ss_pred CCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeec
Q 003399 518 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNF 597 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 597 (823)
....++.|+|+++.+..+|..++++.+|++|+|++|.+..+|..+ +++++|++|+|++|.+..+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 458899999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
++|......+..++.. .....++.+++|+.|+++++. ...+|..+.+
T Consensus 158 ~~n~~~~~~p~~~~~~-------------~~~~~~~~l~~L~~L~L~~n~---l~~lp~~l~~----------------- 204 (328)
T 4fcg_A 158 RACPELTELPEPLAST-------------DASGEHQGLVNLQSLRLEWTG---IRSLPASIAN----------------- 204 (328)
T ss_dssp EEETTCCCCCSCSEEE-------------C-CCCEEESTTCCEEEEEEEC---CCCCCGGGGG-----------------
T ss_pred CCCCCccccChhHhhc-------------cchhhhccCCCCCEEECcCCC---cCcchHhhcC-----------------
Confidence 9987654332222110 000114556667777776652 2234434433
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM 757 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 757 (823)
+++|++|+|++|.+. ..++.++.+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.....+|.
T Consensus 205 -----------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 205 -----------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp -----------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred -----------CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 455666666677664 355678899999999999888776 4677788899999999999988889998
Q ss_pred cccccccccEEEeecCCCCCCCchhccCCCCCcEEEecC
Q 003399 758 GNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWW 796 (823)
Q Consensus 758 ~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~ 796 (823)
.++.+++|+.|++++|+.++.+|..+.++++|+.+.+..
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 899999999999999999999999999999999998764
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.5e-22 Score=226.54 Aligned_cols=302 Identities=14% Similarity=0.096 Sum_probs=237.8
Q ss_pred cCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc-cc-cccccCccccceeeccCCCCccc-chhhhhcC
Q 003399 490 YDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-QY-PSGIENLFLLRYLKLNIPSLKSL-PSSLLSNL 566 (823)
Q Consensus 490 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~~L 566 (823)
..++++.|.+.++... ...+..|.++++|++|+|++|.+. .+ |..+.++.+|++|+|++|.+..+ |..+ +++
T Consensus 28 l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l 102 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGL 102 (455)
T ss_dssp CCTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTC
T ss_pred CCCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCc
Confidence 3688999999988763 344577899999999999999976 55 56799999999999999999987 4455 999
Q ss_pred CCccEEeCCCCcccc-cchh--hcCCCCCceeeccCcccCCCCCCC-cCCCcccceeeccCCC--cccccccCCC--Ccc
Q 003399 567 LNLYTLDMPFSYIDH-TADE--FWKMNKLRHLNFGSITLPAHPGKY-CGSLENLNFISALHPC--CCTEDILGRL--PNL 638 (823)
Q Consensus 567 ~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~~~~-i~~L~~L~~l~~~~~~--~~~~~~l~~l--~~L 638 (823)
++|++|++++|.+.. +|.. +..+++|++|++++|.+....+.. ++++++|+.+++..+. ...+..+..+ .+|
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 999999999998886 3544 899999999999999987754443 7889999999988322 1122224444 678
Q ss_pred ceEEeecccccchh------hHHHhhcCCCCCcEEEeecCC-------------CCCCCcEEeeCCcC------------
Q 003399 639 RNLRIQGDLSYNQS------LLSKSLCRLSCLESLKLANES-------------KMPRLSKIALAEYL------------ 687 (823)
Q Consensus 639 ~~L~i~~~~~~~~~------~l~~~l~~l~~L~~L~l~~~~-------------~~~~L~~L~l~~~~------------ 687 (823)
+.|+++++.-.... .....+..+++|++|++++|. ..++++.|.+.++.
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 89998887521111 111234466899999999863 23788888887651
Q ss_pred ----------cccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce-e
Q 003399 688 ----------FPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-T 756 (823)
Q Consensus 688 ----------~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~ 756 (823)
..++|+.|++++|.+....+..++.+++|+.|+|++|.+.+ ..+..+..+++|+.|++++|. +..+ +
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 340 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQNF-LGSIDS 340 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSC-CCEECG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCCCc-cCCcCh
Confidence 13689999999999987778889999999999999888775 345567889999999999985 5555 5
Q ss_pred ecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 757 MGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 757 ~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
..++.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 567889999999999997544457789999999999999986
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.7e-22 Score=231.99 Aligned_cols=321 Identities=17% Similarity=0.154 Sum_probs=191.7
Q ss_pred CCCceEEEEEEcCCccccc-ccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccccc-ccCccc
Q 003399 469 GKNAKRLNAVERWDDFACL-DDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSG-IENLFL 544 (823)
Q Consensus 469 ~~~~r~l~sl~~~~~~~~~-~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~-i~~L~~ 544 (823)
+..++++ .+.++...... ... +++|++|.+.++... ...+..|.++++|++|+|++|.+..+|.. ++++.+
T Consensus 25 ~~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSL-DLSFNKITYIGHGDLRACANLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEE-ECCSSCCCEECSSTTSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCccEE-ECcCCccCccChhhhhcCCcccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 3456666 66655543321 222 666777776666542 23345566667777777777766655443 666777
Q ss_pred cceeeccCCCCccc--chhhhhcCCCccEEeCCCCc-ccccc-hhhcCCCCCceeeccCcccCCCCCCCcCCCcccceee
Q 003399 545 LRYLKLNIPSLKSL--PSSLLSNLLNLYTLDMPFSY-IDHTA-DEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFIS 620 (823)
Q Consensus 545 Lr~L~L~~~~i~~l--p~~i~~~L~~L~~L~L~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~ 620 (823)
|++|++++|.+..+ |..+ +++++|++|++++|. +..+| ..+..+++|++|++++|.+....+..+++++.|+.++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CcEEECCCCcccccchhhhh-hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 77777777666633 4444 666777777776664 55554 3566677777777766666544344666666666666
Q ss_pred ccCC-Cccccc-ccCCCCccceEEeecccccch-----------------------------hhHHHhhcCCCCCcEEEe
Q 003399 621 ALHP-CCCTED-ILGRLPNLRNLRIQGDLSYNQ-----------------------------SLLSKSLCRLSCLESLKL 669 (823)
Q Consensus 621 ~~~~-~~~~~~-~l~~l~~L~~L~i~~~~~~~~-----------------------------~~l~~~l~~l~~L~~L~l 669 (823)
+... ...++. .++.+++|+.|+++++.-... ..++..+..+++|+.|++
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 5522 111211 123466666666666531000 011222233344444444
Q ss_pred ecCC----------------CCCCCcEEeeCCc---------------CcccCccEeEeecccCCCCCcccc-cCCCCCC
Q 003399 670 ANES----------------KMPRLSKIALAEY---------------LFPHSLTHLSFSNTVLMDDPMPTL-EKLPLLQ 717 (823)
Q Consensus 670 ~~~~----------------~~~~L~~L~l~~~---------------~~~~~L~~L~L~~~~l~~~~~~~l-~~l~~L~ 717 (823)
.++. ..++++.+.+.++ ..+++|+.|++++|.+. ..+..+ +.+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcccc
Confidence 4321 1233444443332 11246778888887764 344444 5788999
Q ss_pred eEEeecCccCCccc--cccCCCCCcccEEeeecCCCCccee---ecccccccccEEEeecCCCCCCCchhccCCCCCcEE
Q 003399 718 VLKLKQNSYSGRKL--TCGSYGFPNLKVLHLKSMLWLEEWT---MGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKF 792 (823)
Q Consensus 718 ~L~L~~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L 792 (823)
.|++++|.+.+... +.....+++|+.|++++|. +..++ ..+..+++|+.|++++|. ++.+|..+..+++|+.|
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEE
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEE
Confidence 99999888765322 2235678899999999874 55554 236788899999999884 66888888888888888
Q ss_pred EecCCC
Q 003399 793 DCWWPQ 798 (823)
Q Consensus 793 ~l~~c~ 798 (823)
++++|.
T Consensus 416 ~Ls~N~ 421 (549)
T 2z81_A 416 NLSSTG 421 (549)
T ss_dssp ECTTSC
T ss_pred ECCCCC
Confidence 888876
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.4e-22 Score=234.20 Aligned_cols=271 Identities=14% Similarity=0.138 Sum_probs=228.0
Q ss_pred CCCcceEEEccCCCCcccccc-ccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCcee
Q 003399 518 MFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHL 595 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 595 (823)
.++++++|+++++.+..+|.. +..+++|++|+|++|.+..+|+..++++++|++|+|++|.+..+|. .++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988876 5789999999999999999887444999999999999999999865 47999999999
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCC--cccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES 673 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 673 (823)
++++|.+.......++++.+|+.+++..+. ...+..++.+++|+.|+++++. ...+ .+..+++|+.|++++|.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~--~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR---LTHV--DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC---CSBC--CGGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC---CCCc--ChhhhhhhhhhhcccCc
Confidence 999998885333356889999999998432 2233348899999999999884 2222 25678899999999864
Q ss_pred -----CCCCCcEEeeCCc-------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcc
Q 003399 674 -----KMPRLSKIALAEY-------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNL 741 (823)
Q Consensus 674 -----~~~~L~~L~l~~~-------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 741 (823)
.+++|+.|.+.++ ..+++|+.|+|++|.+.+ ++.++.+++|+.|+|++|.+.+ ..+..+..+++|
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L 280 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRL 280 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EESGGGTTCSSC
T ss_pred cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC-CCHHHhcCccCC
Confidence 5668999998877 345789999999999865 5789999999999999988876 456678899999
Q ss_pred cEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 742 KVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 742 ~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+.|+|++| .+..++...+.+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 281 ~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 281 ERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 99999997 578888888889999999999997 66899889999999999999987
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=225.37 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=102.7
Q ss_pred eEEEEEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeecc
Q 003399 473 KRLNAVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLN 551 (823)
Q Consensus 473 r~l~sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~ 551 (823)
+++ .+.++.....+....++++.|.+.++... ...+..|.++++|++|+|++|.+..+ |..++++.+|++|+|+
T Consensus 3 ~~l-~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLV-DRSKNGLIHVPKDLSQKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEE-ECTTSCCSSCCCSCCTTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceE-ecCCCCcccccccccccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 344 45555444444434789999999988763 34567889999999999999999866 7789999999999999
Q ss_pred CCCCcccchhhhhcCCCccEEeCCCCcccc--cchhhcCCCCCceeeccCcccCC
Q 003399 552 IPSLKSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHLNFGSITLPA 604 (823)
Q Consensus 552 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~ 604 (823)
+|.+..+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+..
T Consensus 78 ~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 78 HNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp SSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred CCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 9999999975 79999999999998886 47889999999999999988764
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=3.2e-22 Score=231.44 Aligned_cols=322 Identities=16% Similarity=0.107 Sum_probs=220.2
Q ss_pred CCCceEEEEEEcCCccccc-ccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc--cccccccCcc
Q 003399 469 GKNAKRLNAVERWDDFACL-DDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI--QYPSGIENLF 543 (823)
Q Consensus 469 ~~~~r~l~sl~~~~~~~~~-~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~--~lp~~i~~L~ 543 (823)
....++| .+.++...... ... +++|++|.+.++... ...+..|.++++|++|++++|.+. ..|..++++.
T Consensus 49 l~~L~~L-~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 49 CANLQVL-ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS----SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp CTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECTTSCCC----SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT
T ss_pred CCcccEE-ECCCCCcCccChhhccccccCCEEECCCCccC----ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC
Confidence 4568888 88877665443 233 899999999988763 455677899999999999999988 4577899999
Q ss_pred ccceeeccCCC-CcccchhhhhcCCCccEEeCCCCcccc-cchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeec
Q 003399 544 LLRYLKLNIPS-LKSLPSSLLSNLLNLYTLDMPFSYIDH-TADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISA 621 (823)
Q Consensus 544 ~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~ 621 (823)
+|++|++++|. +..+|+..++++++|++|++++|.+.. .|..+.++++|++|+++.|.........++.+.+|+.+++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 99999999998 778886434999999999999998886 4888999999999999988764311002234666666665
Q ss_pred cCCC-ccc--------------------------------ccccCCCCccceEEeecccc--------------------
Q 003399 622 LHPC-CCT--------------------------------EDILGRLPNLRNLRIQGDLS-------------------- 648 (823)
Q Consensus 622 ~~~~-~~~--------------------------------~~~l~~l~~L~~L~i~~~~~-------------------- 648 (823)
..+. ... ...+..+++|+.|.+.+|.-
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 5211 000 00011112222222222110
Q ss_pred ------------------------------------cchhhHHHhh-cCCCCCcEEEeecCC-------------CCCCC
Q 003399 649 ------------------------------------YNQSLLSKSL-CRLSCLESLKLANES-------------KMPRL 678 (823)
Q Consensus 649 ------------------------------------~~~~~l~~~l-~~l~~L~~L~l~~~~-------------~~~~L 678 (823)
.....+|..+ ..+++|+.|++++|. ..++|
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L 363 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccC
Confidence 0112234333 357778888887653 24677
Q ss_pred cEEeeCCc------------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCcc--cc------------
Q 003399 679 SKIALAEY------------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRK--LT------------ 732 (823)
Q Consensus 679 ~~L~l~~~------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~------------ 732 (823)
+.|.+.++ ..+++|+.|++++|.+. ..+..++.+++|+.|++++|.+..-. ++
T Consensus 364 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN 442 (549)
T ss_dssp CEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSC
T ss_pred cEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCC
Confidence 77777665 34678888888888775 45566777777777777776654210 00
Q ss_pred --ccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 733 --CGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 733 --~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
.....+++|+.|++++| .+..+|. ...+++|+.|++++|......|..+..+++|+.|++++||
T Consensus 443 l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 443 LDSFSLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CSCCCCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred hhhhcccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 01236788889999887 4667775 4678999999999986444444568999999999998876
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=233.33 Aligned_cols=131 Identities=19% Similarity=0.147 Sum_probs=112.3
Q ss_pred cccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcC
Q 003399 488 DDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNL 566 (823)
Q Consensus 488 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L 566 (823)
....+.+++|.+.++... ......|.++++|++|+|++|.+..++ ..++++.+|++|+|++|.+..+|+..++++
T Consensus 24 ~~l~~~l~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 24 DNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSSCSSCCEEECCSCCCC----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccccccEEEccCCccC----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 333778999999988763 344567899999999999999998774 568999999999999999998886555999
Q ss_pred CCccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeecc
Q 003399 567 LNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 622 (823)
Q Consensus 567 ~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~ 622 (823)
++|++|++++|.+..+|. .++++++|++|++++|.+.....| .++++++|+.+++.
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 999999999999999876 599999999999999998876555 78888888888876
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.8e-21 Score=231.23 Aligned_cols=318 Identities=17% Similarity=0.081 Sum_probs=158.8
Q ss_pred CCCceEEEEEEcCCccccccc-c--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCccc
Q 003399 469 GKNAKRLNAVERWDDFACLDD-Y--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFL 544 (823)
Q Consensus 469 ~~~~r~l~sl~~~~~~~~~~~-~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~ 544 (823)
+.++++| .+.++.....+.. . +++|++|.+.++... ...+..|.++++|++|+|++|.+..+|. .++++.+
T Consensus 24 ~~~l~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVL-NLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEE-ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEE-ECCCCCCCCcCHHHHhCCCcCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 3455666 5555444332221 2 556666666554432 2233455556666666666666555554 3556666
Q ss_pred cceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcccCCCCCCC--cCCCcccceeec
Q 003399 545 LRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKY--CGSLENLNFISA 621 (823)
Q Consensus 545 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~--i~~L~~L~~l~~ 621 (823)
|++|++++|.+..+|+..++++++|++|++++|.+..+ |..+.++++|++|++++|.+....... ...+.+|+.+++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 66666666665555543225666666666666655544 334555666666666655544322111 223445555555
Q ss_pred cCCC--cccccccCCCCccceEEeeccccc--chhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcc--cCccEe
Q 003399 622 LHPC--CCTEDILGRLPNLRNLRIQGDLSY--NQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFP--HSLTHL 695 (823)
Q Consensus 622 ~~~~--~~~~~~l~~l~~L~~L~i~~~~~~--~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~--~~L~~L 695 (823)
..+. ...+..++.+++|+.|.+.++.-. ....++..+ ..++|+.|+++++. +..........+ ++|+.|
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~----l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQ----LSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSC----CCEECTTTTGGGGGSCCCEE
T ss_pred CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCc----ccccChhHhhccCcCCCCEE
Confidence 4211 111222444555555555444310 011111111 23456666655431 111111111222 237777
Q ss_pred EeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCc-----ceee----ccccccccc
Q 003399 696 SFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLE-----EWTM----GNAAMPKLE 766 (823)
Q Consensus 696 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~~~~----~~~~lp~L~ 766 (823)
++++|.+....+..++.+++|+.|++++|.+.+ ..+..+.++++|+.|+++++..-. .+|. .+..+++|+
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 777776655555566677777777777665554 234445666677777666532111 1221 345566666
Q ss_pred EEEeecCCCCCCCchhccCCCCCcEEEecCC
Q 003399 767 CLIINPCAYLKKMPEQLWCIKSLNKFDCWWP 797 (823)
Q Consensus 767 ~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c 797 (823)
.|++++|......|..+..+++|++|++++|
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 6666666543333445566666666666655
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=2.8e-21 Score=216.81 Aligned_cols=252 Identities=18% Similarity=0.119 Sum_probs=127.3
Q ss_pred hcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCcee
Q 003399 516 YGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 595 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 595 (823)
+..+++|++|++++|.+..+| ++++.+|++|++++|.+..+| + +++++|++|++++|.++.+| ++.+++|++|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L 153 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTEL 153 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEE
T ss_pred cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEE
Confidence 444455555555555544443 444555555555555554443 2 44555555555555444443 4445555555
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 675 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 675 (823)
++++|...... .++.+.+|+.+++......-.. ++.+++|+.|+++++. ...+ .+..+++|+.|++++|
T Consensus 154 ~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~---l~~~--~l~~l~~L~~L~Ls~N--- 222 (457)
T 3bz5_A 154 DCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNN---ITKL--DLNQNIQLTFLDCSSN--- 222 (457)
T ss_dssp ECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSC---CSCC--CCTTCTTCSEEECCSS---
T ss_pred ECCCCCccccc--ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCc---CCee--ccccCCCCCEEECcCC---
Confidence 55544221111 2334444444444421111111 4444555555554442 1111 2444455555555443
Q ss_pred CCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEE----------eecCccCCccccccCCCCCcccEEe
Q 003399 676 PRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLK----------LKQNSYSGRKLTCGSYGFPNLKVLH 745 (823)
Q Consensus 676 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----------L~~~~~~~~~~~~~~~~~~~L~~L~ 745 (823)
.+..+. ...+++|+.|++++|.+.... ++.+++|+.|. +++|.+.+ .++ ...+++|+.|+
T Consensus 223 -~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~-~~~--~~~l~~L~~L~ 292 (457)
T 3bz5_A 223 -KLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLI-YFQ--AEGCRKIKELD 292 (457)
T ss_dssp -CCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCC-EEE--CTTCTTCCCCC
T ss_pred -cccccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCC-ccc--ccccccCCEEE
Confidence 222221 134667777777777765543 33344444443 33333333 122 35678888888
Q ss_pred eecCCCCcceee--------cccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 746 LKSMLWLEEWTM--------GNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 746 L~~~~~l~~~~~--------~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+++|..+..+|. .+..+|+|+.|++++|. ++.+| +.++++|+.|+++++.
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred CCCCcccceeccCCCcceEechhhcccCCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 888876666653 13455667777776665 44454 7788888888887765
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2.1e-21 Score=230.54 Aligned_cols=321 Identities=17% Similarity=0.078 Sum_probs=208.5
Q ss_pred CCceEEEEEEcCCccccc-ccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCcccc
Q 003399 470 KNAKRLNAVERWDDFACL-DDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLL 545 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~~-~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~L 545 (823)
...++| .+..+...... ... +++|++|.+.++... .++...|.++++|++|+|++|.+..+| ..++++.+|
T Consensus 49 ~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 49 SQLTSL-DVGFNTISKLEPELCQKLPMLKVLNLQHNELS----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp TTCSEE-ECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CcCcEE-ECCCCccCccCHHHHhcccCcCEEECCCCccC----ccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 467888 88776554432 223 899999999988653 344557899999999999999998776 679999999
Q ss_pred ceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-h--cCCCCCceeeccCcccCCCCCCCcCCCcccc-----
Q 003399 546 RYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-F--WKMNKLRHLNFGSITLPAHPGKYCGSLENLN----- 617 (823)
Q Consensus 546 r~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~----- 617 (823)
++|++++|.+...++..++++++|++|++++|.+..++.. + ..+++|++|++++|.+....+..++.+..|.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 9999999999877655448999999999999999888653 4 3568999999999987764433444443333
Q ss_pred ----------------------eeeccCCC--cccccccCCCC--ccceEEeecccccchhhHHHhhcCCCCCcEEEeec
Q 003399 618 ----------------------FISALHPC--CCTEDILGRLP--NLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLAN 671 (823)
Q Consensus 618 ----------------------~l~~~~~~--~~~~~~l~~l~--~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 671 (823)
.+.+.... ...+..+..++ +|+.|+++++. .....+..+..+++|+.|++++
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC--CCEECTTTTTTCTTCCEEECCS
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC--cCccCcccccCcccccEeeCCC
Confidence 33333111 01112244443 37777777764 2223345567777888888776
Q ss_pred CC----------CCCCCcEEeeCC-------------------cCcccCccEeEeecccCCCCCcccccCCCCCCeEEee
Q 003399 672 ES----------KMPRLSKIALAE-------------------YLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLK 722 (823)
Q Consensus 672 ~~----------~~~~L~~L~l~~-------------------~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 722 (823)
|. ..++|+.|.+.+ ...+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 361 (680)
T 1ziw_A 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361 (680)
T ss_dssp CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECT
T ss_pred CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECC
Confidence 52 345666666653 2456788999999988877666778888888888888
Q ss_pred cCccCCccc---------------------------cccCCCCCcccEEeeecCCCCccee-ecccccccccEEEeecCC
Q 003399 723 QNSYSGRKL---------------------------TCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCA 774 (823)
Q Consensus 723 ~~~~~~~~~---------------------------~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~lp~L~~L~i~~C~ 774 (823)
+|.+....+ +..+..+++|+.|++++|.....++ ..+..+++|+.|++++|.
T Consensus 362 ~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 765332211 1223334455555555443222232 233445555555555554
Q ss_pred CCCCCchhccCCCCCcEEEecCC
Q 003399 775 YLKKMPEQLWCIKSLNKFDCWWP 797 (823)
Q Consensus 775 ~l~~lp~~l~~l~~L~~L~l~~c 797 (823)
.....|..+..+++|+.|++++|
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTS
T ss_pred cceeChhhhhcCcccccchhccc
Confidence 32223334555556666665554
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3.3e-21 Score=218.76 Aligned_cols=271 Identities=17% Similarity=0.116 Sum_probs=220.0
Q ss_pred CcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeec
Q 003399 520 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 597 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 597 (823)
+.|++|+|++|.+..+ |..+.++.+|++|+|++|.+..+++..++++++|++|+|++|.+..+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5899999999999976 56899999999999999999988544349999999999999999999865 789999999999
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCC-c-ccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPC-C-CTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 675 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~-~-~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 675 (823)
++|.+.......+.++.+|+.+++..+. . .....+..+++|+.|+++++. .....+..+.++++|+.|++.++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n--- 186 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHL--- 186 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESC---
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCC---
Confidence 9998876544478889999999887432 2 223348899999999999984 22333456889999999999975
Q ss_pred CCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce
Q 003399 676 PRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW 755 (823)
Q Consensus 676 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 755 (823)
.+..+.......+++|+.|++++|......++.....++|+.|+|++|.+.. .....+..+++|+.|+|+++. +..+
T Consensus 187 -~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~ 263 (477)
T 2id5_A 187 -NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP-ISTI 263 (477)
T ss_dssp -CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC-CCEE
T ss_pred -cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc-CCcc
Confidence 4555555555778999999999998766666666677799999999988775 222456789999999999985 5555
Q ss_pred e-ecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 756 T-MGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 756 ~-~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+ ..+..+++|+.|++++|......|..+..+++|+.|++++|.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 4 346789999999999997555557789999999999999885
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=4.9e-21 Score=232.24 Aligned_cols=317 Identities=21% Similarity=0.164 Sum_probs=200.5
Q ss_pred CCCCceEEEEEEcCCcccc-cccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCcc
Q 003399 468 SGKNAKRLNAVERWDDFAC-LDDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLF 543 (823)
Q Consensus 468 ~~~~~r~l~sl~~~~~~~~-~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~ 543 (823)
.+..+++| .+..+.+... +... +++|+.|.+.++... ..+.+..|.++++|++|+|++|.+..+ |..++++.
T Consensus 22 lp~~l~~L-dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERL-LLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEE-EEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEE-ECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 56788888 8887766543 2233 889999999887432 234456788999999999999998855 78899999
Q ss_pred ccceeeccCCCCcc-cchh--hhhcCCCccEEeCCCCcccccc--hhhcCCCCCceeeccCcccCCCCCCCcCCC--ccc
Q 003399 544 LLRYLKLNIPSLKS-LPSS--LLSNLLNLYTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLPAHPGKYCGSL--ENL 616 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~-lp~~--i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L--~~L 616 (823)
+|++|+|++|.+.. +|.. + +++++|++|+|++|.+..++ ..++++++|++|++++|.+.......++.+ .+|
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYF-RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCC-SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred ccCEeeCcCCCCCcccccCccc-cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 99999999998875 4544 5 88999999999999887763 568899999999999988766544455544 566
Q ss_pred ceeeccCCC--cccccccCCCCc------cceEEeecccccchhhHHHhhc---CCCCCcEEEeecCC------------
Q 003399 617 NFISALHPC--CCTEDILGRLPN------LRNLRIQGDLSYNQSLLSKSLC---RLSCLESLKLANES------------ 673 (823)
Q Consensus 617 ~~l~~~~~~--~~~~~~l~~l~~------L~~L~i~~~~~~~~~~l~~~l~---~l~~L~~L~l~~~~------------ 673 (823)
+.+.+..+. ...+..++.+++ |+.|+++++. .....+..+. ....+..|.+..+.
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 666665221 111111344443 7888887763 1111111111 11334444433100
Q ss_pred ---------CCCCCcEEeeCCc----------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCcccccc
Q 003399 674 ---------KMPRLSKIALAEY----------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCG 734 (823)
Q Consensus 674 ---------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 734 (823)
..++++.|.+.++ ..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.+ ..+..
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~ 333 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSN 333 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC-CCSCS
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc-cCHHH
Confidence 1133444444332 446677777777777665555666777777777777666544 23445
Q ss_pred CCCCCcccEEeeecCCCCcceee-cccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 735 SYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 735 ~~~~~~L~~L~L~~~~~l~~~~~-~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+..+++|+.|++++|. +..++. .+..+++|+.|++++|. ++.++. +++|+.|+++++.
T Consensus 334 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp CSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred hcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 5667777777777663 444432 35567777777777765 343332 5566666666554
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=235.22 Aligned_cols=300 Identities=21% Similarity=0.232 Sum_probs=233.5
Q ss_pred cCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCC-Cccc-cccccCccccceeeccCCCCcccchhhhhcCC
Q 003399 490 YDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLV-LIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLL 567 (823)
Q Consensus 490 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~ 567 (823)
..+++++|.+.++... ...+..|.++++|++|+|++|. +..+ |..++++.+|++|+|++|.+..+++..+++++
T Consensus 22 lp~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 5789999999988763 3445678999999999999996 4466 78899999999999999999987444349999
Q ss_pred CccEEeCCCCcccc-cchh--hcCCCCCceeeccCcccCCCCCC-CcCCCcccceeeccCCC--cccccccCCC--Cccc
Q 003399 568 NLYTLDMPFSYIDH-TADE--FWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALHPC--CCTEDILGRL--PNLR 639 (823)
Q Consensus 568 ~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~~~~--~~~~~~l~~l--~~L~ 639 (823)
+|++|+|++|.+.. +|.. +.++++|++|++++|.+....++ .++++++|+.+++..+. ...+..++.+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 99999999998876 4654 89999999999999998876655 78889999999887432 1122225555 7899
Q ss_pred eEEeecccccchhhHHHhhcCCC------CCcEEEeecCC-------------CCCCCcEEeeCCc--------------
Q 003399 640 NLRIQGDLSYNQSLLSKSLCRLS------CLESLKLANES-------------KMPRLSKIALAEY-------------- 686 (823)
Q Consensus 640 ~L~i~~~~~~~~~~l~~~l~~l~------~L~~L~l~~~~-------------~~~~L~~L~l~~~-------------- 686 (823)
.|.++.+. .....+..+..+. .|+.|++++|. ....+..+.+...
T Consensus 178 ~L~L~~n~--l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 178 FFSLAANS--LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CCEECCSB--SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred eEECCCCc--cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 99998875 2233333344443 39999998762 2245566655411
Q ss_pred -------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce-eec
Q 003399 687 -------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-TMG 758 (823)
Q Consensus 687 -------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~~~ 758 (823)
...++|+.|++++|.+....+..++.+++|+.|+|++|.+.+ ..+..+.++++|+.|+|++|. +..+ +..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 333 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNL-LGELYSSN 333 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCC-CSCCCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCC-CCccCHHH
Confidence 113789999999999877777889999999999999888765 345567889999999999985 4444 667
Q ss_pred ccccccccEEEeecCCCCCCCc-hhccCCCCCcEEEecCCC
Q 003399 759 NAAMPKLECLIINPCAYLKKMP-EQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 759 ~~~lp~L~~L~i~~C~~l~~lp-~~l~~l~~L~~L~l~~c~ 798 (823)
+..+++|+.|++++|. +..+| ..+.++++|+.|++++|.
T Consensus 334 ~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred hcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 8899999999999996 55555 468899999999999986
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.7e-21 Score=224.08 Aligned_cols=315 Identities=17% Similarity=0.137 Sum_probs=204.7
Q ss_pred eEEEEEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeecc
Q 003399 473 KRLNAVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLN 551 (823)
Q Consensus 473 r~l~sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~ 551 (823)
+++ .+.++.....+....++++.|.+.++... ...+..|.++++|++|+|++|.+..+ |..++++++|++|+|+
T Consensus 34 ~~l-~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMV-DYSNRNLTHVPKDLPPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEE-ECTTSCCCSCCTTSCTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEE-EcCCCCCccCCCCCCCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 667 77666655554444789999999998864 34557889999999999999999976 6789999999999999
Q ss_pred CCCCcccchhhhhcCCCccEEeCCCCcccccc--hhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCc---
Q 003399 552 IPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCC--- 626 (823)
Q Consensus 552 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~--- 626 (823)
+|.+..+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+.......+.+| .|+.+++..+..
T Consensus 109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIK 184 (562)
T ss_dssp TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCC
T ss_pred CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeeccccccc
Confidence 9999999985 8999999999999998864 789999999999999998876433355555 447666652111
Q ss_pred -----cccc----------------------ccCCCCccceEEeecccc------------------------------c
Q 003399 627 -----CTED----------------------ILGRLPNLRNLRIQGDLS------------------------------Y 649 (823)
Q Consensus 627 -----~~~~----------------------~l~~l~~L~~L~i~~~~~------------------------------~ 649 (823)
.+.. .+..+++|+.|+++++.. .
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 1110 122344555555554310 0
Q ss_pred chhhHHHhhcCCCCCcEEEeecCC-----C--C----------------------------------CCCcEEeeCCc--
Q 003399 650 NQSLLSKSLCRLSCLESLKLANES-----K--M----------------------------------PRLSKIALAEY-- 686 (823)
Q Consensus 650 ~~~~l~~~l~~l~~L~~L~l~~~~-----~--~----------------------------------~~L~~L~l~~~-- 686 (823)
....++..+ ..++|++|+++++. + . .+++.|.+.++
T Consensus 265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 001111111 11244555544421 0 0 12333433333
Q ss_pred ------CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCc-cccccCCCCCcccEEeeecCCCCcceeec-
Q 003399 687 ------LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGR-KLTCGSYGFPNLKVLHLKSMLWLEEWTMG- 758 (823)
Q Consensus 687 ------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~~~~~- 758 (823)
..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+. ..+..+..+++|+.|++++|.....+|..
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 3456777777777776665666677777777777776665541 22334556666666666665422213321
Q ss_pred cc---------------------cc-ccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 759 NA---------------------AM-PKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 759 ~~---------------------~l-p~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
.. .+ ++|+.|++++| .++.+|..+..+++|+.|+++++.
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC
Confidence 11 22 57777777777 366788777788888888888875
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.3e-21 Score=210.86 Aligned_cols=268 Identities=16% Similarity=0.159 Sum_probs=167.0
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
.++++.|.+.++... ...+..|.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|..+ . .+|
T Consensus 53 ~~~l~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~--~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNNDIS----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-P--SSL 125 (332)
T ss_dssp CTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-C--TTC
T ss_pred CCCCeEEECCCCcCC----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-c--ccC
Confidence 455666665555432 22334455666666666666665543 455566666666666666666665544 2 556
Q ss_pred cEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccc
Q 003399 570 YTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLS 648 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~ 648 (823)
++|++++|.+..+|. .+..+++|++|++++|.+... ......++.+ +|+.|+++++.
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~~~l-~L~~L~l~~n~- 183 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS--------------------GFEPGAFDGL-KLNYLRISEAK- 183 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG--------------------GSCTTSSCSC-CCSCCBCCSSB-
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccC--------------------CCCcccccCC-ccCEEECcCCC-
Confidence 666666665555543 255566666666655544310 0111224445 67777777663
Q ss_pred cchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCC
Q 003399 649 YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSG 728 (823)
Q Consensus 649 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 728 (823)
...+|..+. ++|+.|++++| .+..+.......+++|+.|++++|.+....+..++.+++|+.|+|++|.+.
T Consensus 184 --l~~l~~~~~--~~L~~L~l~~n----~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 184 --LTGIPKDLP--ETLNELHLDHN----KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp --CSSCCSSSC--SSCSCCBCCSS----CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred --CCccCcccc--CCCCEEECCCC----cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 233443332 57788887765 344443334456788999999999887766667889999999999988776
Q ss_pred ccccccCCCCCcccEEeeecCCCCcceeec-cc------ccccccEEEeecCCCC--CCCchhccCCCCCcEEEecCCC
Q 003399 729 RKLTCGSYGFPNLKVLHLKSMLWLEEWTMG-NA------AMPKLECLIINPCAYL--KKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 729 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~------~lp~L~~L~i~~C~~l--~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
.++..+..+++|+.|+++++. +..++.. +. .+++|+.|++.+|+.. ...|..+..+++|+.|+++++.
T Consensus 255 -~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 -RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 366667788999999999874 5655432 11 2578999999999854 3456678889999999998874
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=6.5e-21 Score=213.88 Aligned_cols=269 Identities=16% Similarity=0.068 Sum_probs=213.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
+++|++|.+.++.... . + .+..+++|++|+|++|.+..+| ++.+.+|++|++++|.+..+| + +++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~----~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----M-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC----C-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCC
T ss_pred cCCCCEEEccCCCccc----C-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCC
Confidence 8999999999887643 2 2 5789999999999999999886 899999999999999999986 5 9999999
Q ss_pred EEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC--CcccccccCCCCccceEEeecccc
Q 003399 571 TLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIQGDLS 648 (823)
Q Consensus 571 ~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~i~~~~~ 648 (823)
+|++++|.+..+| ++.+++|++|++++|.+... .++++..|+.+++..+ ...+ . ++.+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~-~~~l~~L~~L~ls~n~- 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-D-VTPQTQLTTLDCSFNK- 181 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-C-CTTCTTCCEEECCSSC-
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-c-cccCCcCCEEECCCCc-
Confidence 9999999999887 88999999999999988763 3677888888888743 2222 3 8889999999999884
Q ss_pred cchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCC
Q 003399 649 YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSG 728 (823)
Q Consensus 649 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 728 (823)
...++ +..+++|+.|++++| .+..+. ...+++|+.|++++|.+.. . + ++.+++|+.|++++|.+.+
T Consensus 182 --l~~l~--l~~l~~L~~L~l~~N----~l~~~~---l~~l~~L~~L~Ls~N~l~~-i-p-~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 182 --ITELD--VSQNKLLNRLNCDTN----NITKLD---LNQNIQLTFLDCSSNKLTE-I-D-VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp --CCCCC--CTTCTTCCEEECCSS----CCSCCC---CTTCTTCSEEECCSSCCSC-C-C-CTTCTTCSEEECCSSCCSC
T ss_pred --cceec--cccCCCCCEEECcCC----cCCeec---cccCCCCCEEECcCCcccc-c-C-ccccCCCCEEEeeCCcCCC
Confidence 33344 778899999999876 344443 3558999999999999866 3 3 8899999999999998877
Q ss_pred ccccccCCCCCcccE----------EeeecCCCCcceeecccccccccEEEeecCCCCCCCchh--------ccCCCCCc
Q 003399 729 RKLTCGSYGFPNLKV----------LHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQ--------LWCIKSLN 790 (823)
Q Consensus 729 ~~~~~~~~~~~~L~~----------L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~--------l~~l~~L~ 790 (823)
. + ...|++|+. |++++|..+..+| .+.+++|+.|++++|+.++.+|.. +.++++|+
T Consensus 248 ~--~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 248 L--D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp C--C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred c--C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 3 2 345665554 4555555555555 467899999999999988777642 45567778
Q ss_pred EEEecCCC
Q 003399 791 KFDCWWPQ 798 (823)
Q Consensus 791 ~L~l~~c~ 798 (823)
.|+++++.
T Consensus 322 ~L~L~~N~ 329 (457)
T 3bz5_A 322 YLYLNNTE 329 (457)
T ss_dssp EEECTTCC
T ss_pred EEECCCCc
Confidence 88777664
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=5.8e-21 Score=205.58 Aligned_cols=268 Identities=16% Similarity=0.154 Sum_probs=155.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
.++++.|.+.++... ......|.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|..+ . ++|
T Consensus 51 ~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~--~~L 123 (330)
T 1xku_A 51 PPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-P--KTL 123 (330)
T ss_dssp CTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-C--TTC
T ss_pred CCCCeEEECCCCcCC----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-c--ccc
Confidence 455666666555442 22333456666666666666665544 555666666666666666666666544 2 566
Q ss_pred cEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccc
Q 003399 570 YTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLS 648 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~ 648 (823)
++|++++|.+..++. .+.++++|++|++++|.+... ......+..+++|+.|+++++.
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~~~l~~L~~L~l~~n~- 182 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS--------------------GIENGAFQGMKKLSYIRIADTN- 182 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG--------------------GBCTTGGGGCTTCCEEECCSSC-
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc--------------------CcChhhccCCCCcCEEECCCCc-
Confidence 666666666665543 355666666666665544310 0111225566677777776663
Q ss_pred cchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCC
Q 003399 649 YNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSG 728 (823)
Q Consensus 649 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 728 (823)
...+|..+. ++|+.|++++| .+..+.......+++|+.|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus 183 --l~~l~~~~~--~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 183 --ITTIPQGLP--PSLTELHLDGN----KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp --CCSCCSSCC--TTCSEEECTTS----CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred --cccCCcccc--ccCCEEECCCC----cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 223333322 56777777654 344443334455677777777777766555556777777777777777665
Q ss_pred ccccccCCCCCcccEEeeecCCCCcceeecc-------cccccccEEEeecCCCCC--CCchhccCCCCCcEEEecCC
Q 003399 729 RKLTCGSYGFPNLKVLHLKSMLWLEEWTMGN-------AAMPKLECLIINPCAYLK--KMPEQLWCIKSLNKFDCWWP 797 (823)
Q Consensus 729 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~-------~~lp~L~~L~i~~C~~l~--~lp~~l~~l~~L~~L~l~~c 797 (823)
.++..+..+++|+.|++++|. +..++... ...++|+.|++.+++... ..|..+..+++|+.++++++
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -cCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 355556677777777777763 55443221 124677778887777432 33456777777877777654
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=5.2e-22 Score=211.78 Aligned_cols=248 Identities=17% Similarity=0.198 Sum_probs=144.4
Q ss_pred CCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccC-CCCc-cccccccCccccceeeccCCCCc-ccchhhhhcCCC
Q 003399 492 SQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGS-LVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPSSLLSNLLN 568 (823)
Q Consensus 492 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~-~~l~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 568 (823)
.+++.|.+.++.... ....+..+.++++|++|+|++ +.+. .+|..++++++|++|++++|.+. .+|..+ +++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence 466777776665421 002334566777777777774 5554 56667777777777777777766 566665 77777
Q ss_pred ccEEeCCCCccc-ccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCC-ccceEEeecc
Q 003399 569 LYTLDMPFSYID-HTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLP-NLRNLRIQGD 646 (823)
Q Consensus 569 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~-~L~~L~i~~~ 646 (823)
|++|++++|.+. .+|..+..+++|++|++++|.+.. .++..++.++ +|+.|+++++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----------------------~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG----------------------AIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE----------------------ECCGGGGCCCTTCCEEECCSS
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC----------------------cCCHHHhhhhhcCcEEECcCC
Confidence 777777777666 456667777777777777665532 1112255555 6777777665
Q ss_pred cccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCcc
Q 003399 647 LSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSY 726 (823)
Q Consensus 647 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 726 (823)
. ....+|..+..++ |+.|++++|.+....+..++.+++|+.|+|++|.+
T Consensus 185 ~--l~~~~~~~~~~l~-----------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 185 R--LTGKIPPTFANLN-----------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp E--EEEECCGGGGGCC-----------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred e--eeccCChHHhCCc-----------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 3 2223344444333 44555555555445555566666666666666655
Q ss_pred CCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 727 SGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 727 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
.+. .+ .+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|.. .++++|+.+++.++|
T Consensus 234 ~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 234 AFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCB-GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eee-cC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 432 12 2445566666666665433345555566666666666666544455543 556666666666554
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.7e-21 Score=207.89 Aligned_cols=222 Identities=15% Similarity=0.133 Sum_probs=156.9
Q ss_pred CCceEEEEEEcCCccc---ccccc--CCCccEEEeec-CCCCCCCccchHHHhcCCCcceEEEccCCCCc-cccccccCc
Q 003399 470 KNAKRLNAVERWDDFA---CLDDY--DSQLHSFLCCS-PESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-QYPSGIENL 542 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~---~~~~~--~~~LrsL~~~~-~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-~lp~~i~~L 542 (823)
..++++ .+.++.... .+... +++|++|.+.+ +... ...+..|.++++|++|+|++|.+. .+|..++++
T Consensus 50 ~~l~~L-~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNL-DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEE-EEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEE-ECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 578899 888876642 33444 89999999985 5432 234466899999999999999998 889999999
Q ss_pred cccceeeccCCCCc-ccchhhhhcCCCccEEeCCCCccc-ccchhhcCCC-CCceeeccCcccCCCCCCCcCCCccccee
Q 003399 543 FLLRYLKLNIPSLK-SLPSSLLSNLLNLYTLDMPFSYID-HTADEFWKMN-KLRHLNFGSITLPAHPGKYCGSLENLNFI 619 (823)
Q Consensus 543 ~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~~~~~i~~L~~L~~l 619 (823)
++|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..+..++ +|++|++++|.+...
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-------------- 189 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-------------- 189 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE--------------
T ss_pred CCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc--------------
Confidence 99999999999998 788887 99999999999999998 7899999998 999999999976531
Q ss_pred eccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeec
Q 003399 620 SALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSN 699 (823)
Q Consensus 620 ~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~ 699 (823)
++..++.++ |+.|+++++. .....+..+..+++|+.|++++|. +... +.....+++|++|++++
T Consensus 190 --------~~~~~~~l~-L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~----l~~~-~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 190 --------IPPTFANLN-LAFVDLSRNM--LEGDASVLFGSDKNTQKIHLAKNS----LAFD-LGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp --------CCGGGGGCC-CSEEECCSSE--EEECCGGGCCTTSCCSEEECCSSE----ECCB-GGGCCCCTTCCEEECCS
T ss_pred --------CChHHhCCc-ccEEECcCCc--ccCcCCHHHhcCCCCCEEECCCCc----eeee-cCcccccCCCCEEECcC
Confidence 112255666 9999999885 333456666777777777766431 1100 00012344555555555
Q ss_pred ccCCCCCcccccCCCCCCeEEeecCccC
Q 003399 700 TVLMDDPMPTLEKLPLLQVLKLKQNSYS 727 (823)
Q Consensus 700 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 727 (823)
|.+.+..+..+..+++|+.|+|++|.+.
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CcccCcCChHHhcCcCCCEEECcCCccc
Confidence 5544444444445555555555544444
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=5.7e-20 Score=216.31 Aligned_cols=325 Identities=16% Similarity=0.084 Sum_probs=215.6
Q ss_pred CCCCCceEEEEEEcCCcccccc-cc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCc
Q 003399 467 GSGKNAKRLNAVERWDDFACLD-DY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENL 542 (823)
Q Consensus 467 ~~~~~~r~l~sl~~~~~~~~~~-~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L 542 (823)
..|..+++| .+..+.+...+. .. +++|+.|.+.++... .+.+..|.++++|++|+|++|.++.+|. .|.+|
T Consensus 49 ~lp~~~~~L-dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 49 NLPFSTKNL-DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SSCTTCCEE-ECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCcCCCEE-EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 356789999 998887766543 23 899999999988763 4556789999999999999999998875 57899
Q ss_pred cccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccc--cchhhcCCCCCceeeccCcccCCCCCCCcC---------
Q 003399 543 FLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHLNFGSITLPAHPGKYCG--------- 611 (823)
Q Consensus 543 ~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~--------- 611 (823)
.+|++|+|++|.+..+|+..++++++|++|++++|.+.. +|..+..+++|++|++++|.+.......+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999999999999988655999999999999998875 477889999999999998865431100000
Q ss_pred ------------------C-------------------------Ccccce------------------------------
Q 003399 612 ------------------S-------------------------LENLNF------------------------------ 618 (823)
Q Consensus 612 ------------------~-------------------------L~~L~~------------------------------ 618 (823)
. +..++.
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 0 000000
Q ss_pred ---------------------------eeccCC-Cccccc----------------------------------------
Q 003399 619 ---------------------------ISALHP-CCCTED---------------------------------------- 630 (823)
Q Consensus 619 ---------------------------l~~~~~-~~~~~~---------------------------------------- 630 (823)
+..... ...+..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 000000 000000
Q ss_pred --ccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC----------------------------------C
Q 003399 631 --ILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES----------------------------------K 674 (823)
Q Consensus 631 --~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------------------------------~ 674 (823)
....+++|+.|.++.+.-......+.....+.+|+.|++..+. .
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 0112334444444433211111122233333444444443321 1
Q ss_pred CCCCcEEeeCCc----------CcccCccEeEeecccCCC-CCcccccCCCCCCeEEeecCccCCccccccCCCCCcccE
Q 003399 675 MPRLSKIALAEY----------LFPHSLTHLSFSNTVLMD-DPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKV 743 (823)
Q Consensus 675 ~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 743 (823)
.+++..+.+..+ ..+++|+.|++++|.... ..+..+..+++|+.|+|++|.+.+ ..+..+.++++|+.
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCE
Confidence 223333333332 346778888888876433 345568889999999999887765 34566788999999
Q ss_pred EeeecCCCCccee-ecccccccccEEEeecCCCCCCCchhccCC-CCCcEEEecCCC
Q 003399 744 LHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPEQLWCI-KSLNKFDCWWPQ 798 (823)
Q Consensus 744 L~L~~~~~l~~~~-~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l-~~L~~L~l~~c~ 798 (823)
|+|++| .+..++ ..+..+++|+.|++++|......|..+.++ ++|+.|+++++|
T Consensus 523 L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 523 LNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999988 466664 457789999999999998555556678887 689999998743
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=8.3e-20 Score=196.52 Aligned_cols=264 Identities=18% Similarity=0.177 Sum_probs=172.4
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccC
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGS 599 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~ 599 (823)
.|++++++++.+..+|..+. .+|++|++++|.+..+|+..++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45555555555555554433 3455555555555555443225555555555555555544 44455555555555555
Q ss_pred cccCCCCCCCcCCCcccceeeccCC--CcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 600 ITLPAHPGKYCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 600 ~~~~~~~~~~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
|.+.... ..+. ++|+.+++..+ .......+..+++|+.|+++++.-......+..+.++++|+.|+++++ .
T Consensus 110 n~l~~l~-~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n----~ 182 (330)
T 1xku_A 110 NQLKELP-EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----N 182 (330)
T ss_dssp SCCSBCC-SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS----C
T ss_pred CcCCccC-hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC----c
Confidence 5444211 1111 33444444311 111223378899999999998853223345667888999999999876 2
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM 757 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 757 (823)
+..+.. ..+++|++|++++|.+....+..+..+++|+.|+|++|.+.+ ..+..+..+++|+.|++++| .+..+|.
T Consensus 183 l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 183 ITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp CCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred cccCCc---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCC-cCccCCh
Confidence 333221 224899999999999877777889999999999999888765 23335677999999999998 5778888
Q ss_pred cccccccccEEEeecCCCCCCCchh-c------cCCCCCcEEEecCCCH
Q 003399 758 GNAAMPKLECLIINPCAYLKKMPEQ-L------WCIKSLNKFDCWWPQP 799 (823)
Q Consensus 758 ~~~~lp~L~~L~i~~C~~l~~lp~~-l------~~l~~L~~L~l~~c~~ 799 (823)
.+..+++|+.|++++|+ ++.+|.. + ...++|+.|+++++|-
T Consensus 258 ~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 88999999999999997 5656542 2 1357899999999983
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.5e-20 Score=201.65 Aligned_cols=222 Identities=18% Similarity=0.196 Sum_probs=173.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
.++++.|.+.++.... + +..+.++++|++|+|++|.+..+|..++++.+|++|+|++|.+..+|..+ +++++|+
T Consensus 80 ~~~l~~L~L~~n~l~~----l-p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ----F-PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCSS----C-CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCC
T ss_pred ccceeEEEccCCCchh----c-ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCC
Confidence 4677777777766532 2 23456699999999999999999999999999999999999999999998 9999999
Q ss_pred EEeCCCC-cccccchhhcC---------CCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccce
Q 003399 571 TLDMPFS-YIDHTADEFWK---------MNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRN 640 (823)
Q Consensus 571 ~L~L~~~-~l~~lp~~i~~---------L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~ 640 (823)
+|++++| .+..+|..+.. +++|++|++++|.+.. ++..++.+++|+.
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-----------------------LPASIANLQNLKS 210 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-----------------------CCGGGGGCTTCCE
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-----------------------chHhhcCCCCCCE
Confidence 9999998 56677887765 9999999999987652 1223778889999
Q ss_pred EEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEE
Q 003399 641 LRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLK 720 (823)
Q Consensus 641 L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 720 (823)
|+++++. ...+|..+..+ ++|+.|++++|.+....+..++.+++|+.|+
T Consensus 211 L~L~~N~---l~~l~~~l~~l----------------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 211 LKIRNSP---LSALGPAIHHL----------------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp EEEESSC---CCCCCGGGGGC----------------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred EEccCCC---CCcCchhhccC----------------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 9999873 22344444444 4555555556666666677788888888888
Q ss_pred eecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecC
Q 003399 721 LKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPC 773 (823)
Q Consensus 721 L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C 773 (823)
|++|...+ .++..+..+++|+.|+|++|..+..+|..++.+++|+.+.+...
T Consensus 260 L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 260 LKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88777665 45666778888899999888888888888888888888877644
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.1e-19 Score=195.63 Aligned_cols=262 Identities=18% Similarity=0.190 Sum_probs=167.6
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccC
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGS 599 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~ 599 (823)
.|++++++++.+..+|..+. .+|++|++++|.+..+++..++++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 34555555555555554442 3555555555555544432225555555555555555544 34455555555555555
Q ss_pred cccCCCCCCCcCCCcccceeeccCC-Cc-ccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 600 ITLPAHPGKYCGSLENLNFISALHP-CC-CTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 600 ~~~~~~~~~~i~~L~~L~~l~~~~~-~~-~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
|.+... ++.+. ++|+.+++..+ .. .....+..+++|+.|+++++.-......+..+..+ +|+.|++++| .
T Consensus 112 n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n----~ 183 (332)
T 2ft3_A 112 NHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA----K 183 (332)
T ss_dssp SCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS----B
T ss_pred CcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC----C
Confidence 544421 11111 33444444311 11 11223788999999999887522223445566666 8899988865 2
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM 757 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 757 (823)
+..+.. ..+++|++|++++|.+....+..+..+++|+.|+|++|.+.+ ..+..+..+++|+.|++++| .+..+|.
T Consensus 184 l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 258 (332)
T 2ft3_A 184 LTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNN-KLSRVPA 258 (332)
T ss_dssp CSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred CCccCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCC-cCeecCh
Confidence 332221 224799999999999887777889999999999999988776 23445678999999999998 5778888
Q ss_pred cccccccccEEEeecCCCCCCCch-hccC------CCCCcEEEecCCC
Q 003399 758 GNAAMPKLECLIINPCAYLKKMPE-QLWC------IKSLNKFDCWWPQ 798 (823)
Q Consensus 758 ~~~~lp~L~~L~i~~C~~l~~lp~-~l~~------l~~L~~L~l~~c~ 798 (823)
.+..+++|+.|++++|+ ++.+|. .+.. .++|+.|++.++|
T Consensus 259 ~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp TGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 88999999999999997 565653 2222 5789999999998
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=5.8e-19 Score=197.84 Aligned_cols=290 Identities=19% Similarity=0.160 Sum_probs=180.8
Q ss_pred CCCCceEEEEEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccce
Q 003399 468 SGKNAKRLNAVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 547 (823)
Q Consensus 468 ~~~~~r~l~sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~ 547 (823)
.+...+++ .+..+.....+ ...++|+.|.+.++....+. ...+.|++|++++|.+..+| .++++.+|++
T Consensus 89 ~~~~L~~L-~l~~n~l~~lp-~~~~~L~~L~l~~n~l~~l~--------~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 LPPHLESL-VASCNSLTELP-ELPQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCTTCSEE-ECCSSCCSSCC-CCCTTCCEEECCSSCCSCCC--------SCCTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CcCCCCEE-EccCCcCCccc-cccCCCcEEECCCCccCccc--------CCCCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 34567777 77666554432 22577888888776553211 11267888888888888777 5888888888
Q ss_pred eeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccC-CCc
Q 003399 548 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALH-PCC 626 (823)
Q Consensus 548 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~-~~~ 626 (823)
|++++|.+..+|..+ .+|++|++++|.+..+| .++.+++|++|++++|.+.. .|.+ ..+|+.+++.. ...
T Consensus 158 L~l~~N~l~~lp~~~----~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~--l~~~--~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP----PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK--LPDL--PLSLESIVAGNNILE 228 (454)
T ss_dssp EECCSSCCSCCCCCC----TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCCC--CTTCCEEECCSSCCS
T ss_pred EECCCCcCcccCCCc----ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc--CCCC--cCcccEEECcCCcCC
Confidence 888888888777543 47888888888887777 57888888888888887664 2211 13555666652 223
Q ss_pred ccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC------CCCCCcEEeeCCc------CcccCccE
Q 003399 627 CTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES------KMPRLSKIALAEY------LFPHSLTH 694 (823)
Q Consensus 627 ~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l~~~------~~~~~L~~ 694 (823)
.+++ ++.+++|+.|+++++. ...+|. ..++|+.|++++|. .+++|+.|.+.++ ..+++|+.
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred cccc-cCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCE
Confidence 4455 7778888888887763 222332 23577777777653 2346667766665 22357777
Q ss_pred eEeecccCCCCCcccccCC-CCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecC
Q 003399 695 LSFSNTVLMDDPMPTLEKL-PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPC 773 (823)
Q Consensus 695 L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C 773 (823)
|++++|.+.. +..+ ++|+.|++++|.+.+ ++. .+++|+.|++++| .+..+|. .+++|+.|++++|
T Consensus 302 L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp~---~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 302 LNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LPA---LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp EECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred EECcCCcCCc-----ccCCcCcCCEEECCCCcccc--ccc---cCCcCCEEECCCC-ccccccc---hhhhccEEECCCC
Confidence 7777776543 2334 478888888776664 332 3677888888876 4566665 4678888888887
Q ss_pred CCCC--CCchhccCC-------------CCCcEEEecCCC
Q 003399 774 AYLK--KMPEQLWCI-------------KSLNKFDCWWPQ 798 (823)
Q Consensus 774 ~~l~--~lp~~l~~l-------------~~L~~L~l~~c~ 798 (823)
+... .+|..+.++ ++|+.|++++++
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 6544 566666666 678888877765
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=193.35 Aligned_cols=225 Identities=20% Similarity=0.177 Sum_probs=128.2
Q ss_pred CcceEEEccCCCCcccccc-ccCccccceeeccCCCCccc---chhhhhcCCCccEEeCCCCcccccchhhcCCCCCcee
Q 003399 520 KLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSL---PSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 595 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 595 (823)
+.|++|+|+++.+..+|.. +.++++|++|++++|.+..+ |..+ ..+.+|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 4666777777666666654 46666777777776666544 4554 56667777777777666666666667777777
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 675 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 675 (823)
++++|.+..... . ..+..+++|+.|+++++. .....+..+..+
T Consensus 107 ~l~~n~l~~~~~--------------------~-~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l-------------- 149 (306)
T 2z66_A 107 DFQHSNLKQMSE--------------------F-SVFLSLRNLIYLDISHTH--TRVAFNGIFNGL-------------- 149 (306)
T ss_dssp ECTTSEEESSTT--------------------T-TTTTTCTTCCEEECTTSC--CEECSTTTTTTC--------------
T ss_pred ECCCCccccccc--------------------c-hhhhhccCCCEEECCCCc--CCccchhhcccC--------------
Confidence 666665443110 0 115556666666666653 112222333344
Q ss_pred CCCcEEeeCCcCcccCccEeEeecccCCC-CCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcc
Q 003399 676 PRLSKIALAEYLFPHSLTHLSFSNTVLMD-DPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE 754 (823)
Q Consensus 676 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 754 (823)
++|++|++++|.+.. ..+..+..+++|+.|+|++|.+.+ ..+..+..+++|+.|++++|. +..
T Consensus 150 --------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~ 213 (306)
T 2z66_A 150 --------------SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNN-FFS 213 (306)
T ss_dssp --------------TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSC-CSB
T ss_pred --------------cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCc-cCc
Confidence 445555555555433 234455566666666666655543 223445556666666666653 333
Q ss_pred ee-ecccccccccEEEeecCCCCCCCchhccCCC-CCcEEEecCCC
Q 003399 755 WT-MGNAAMPKLECLIINPCAYLKKMPEQLWCIK-SLNKFDCWWPQ 798 (823)
Q Consensus 755 ~~-~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~-~L~~L~l~~c~ 798 (823)
++ ..+..+++|+.|++++|......|..+..++ +|+.|++++++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 32 2345566777777777764444555566663 67777776644
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=197.18 Aligned_cols=252 Identities=15% Similarity=0.160 Sum_probs=173.6
Q ss_pred CcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeec
Q 003399 520 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 597 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 597 (823)
+.|++|++++|.+..+|. .+.++++|++|++++|.+..+++..++++++|++|++++|.+..+|.. +.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 578888998888887765 688888899999988888877655348888899999988888888765 788888999988
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
++|.+...... ..+..+++|+.|+++++.. .....+..+.++++|+.|++++| .
T Consensus 132 ~~n~l~~l~~~---------------------~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~l~~L~~L~l~~n----~ 185 (353)
T 2z80_A 132 LGNPYKTLGET---------------------SLFSHLTKLQILRVGNMDT-FTKIQRKDFAGLTFLEELEIDAS----D 185 (353)
T ss_dssp TTCCCSSSCSS---------------------CSCTTCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEET----T
T ss_pred CCCCCcccCch---------------------hhhccCCCCcEEECCCCcc-ccccCHHHccCCCCCCEEECCCC----C
Confidence 88876542110 1256677777777777620 11122345667777888887765 3
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccc--cCCCCCcccEEeeecCCCC---
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTC--GSYGFPNLKVLHLKSMLWL--- 752 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~l--- 752 (823)
+..........+++|++|++++|.+.......+..+++|+.|++++|.+.+..... .....+.++.+.+.++..-
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 44444444456778888888888764332233445788888888877766522111 1223566777777766321
Q ss_pred -cceeecccccccccEEEeecCCCCCCCchhc-cCCCCCcEEEecCCC
Q 003399 753 -EEWTMGNAAMPKLECLIINPCAYLKKMPEQL-WCIKSLNKFDCWWPQ 798 (823)
Q Consensus 753 -~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l-~~l~~L~~L~l~~c~ 798 (823)
..+|..+..+++|+.|++++|. ++.+|..+ ..+++|++|+++++|
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 1345556778899999999885 66788764 788999999998865
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2.6e-18 Score=198.54 Aligned_cols=254 Identities=18% Similarity=0.085 Sum_probs=161.2
Q ss_pred ceEEEEEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeecc
Q 003399 472 AKRLNAVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLN 551 (823)
Q Consensus 472 ~r~l~sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~ 551 (823)
.+.+ .+.++.....+....++|+.|.+.++.... ++ ..+++|++|+|++|.++.+|. .+.+|++|+++
T Consensus 42 l~~L-~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~----lp----~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVL-NVGESGLTTLPDCLPAHITTLVIPDNNLTS----LP----ALPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEE-ECCSSCCSCCCSCCCTTCSEEEECSCCCSC----CC----CCCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CcEE-EecCCCcCccChhhCCCCcEEEecCCCCCC----CC----CcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 4556 666655554444446788888888776532 11 156788888888888888876 67788888888
Q ss_pred CCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccc
Q 003399 552 IPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDI 631 (823)
Q Consensus 552 ~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~ 631 (823)
+|.+..+|. .+.+|++|++++|.+..+|.. +++|++|++++|.+... |
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l--~----------------------- 157 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL--P----------------------- 157 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC--C-----------------------
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCc--C-----------------------
Confidence 888888876 467788888888888888764 47888888888876541 1
Q ss_pred cCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCccccc
Q 003399 632 LGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLE 711 (823)
Q Consensus 632 l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~ 711 (823)
..+++|+.|+++++. ...+| ..+++|+.|++++| .+..+. ..+++|+.|++++|.+.. .+.
T Consensus 158 -~~~~~L~~L~L~~N~---l~~l~---~~~~~L~~L~Ls~N----~l~~l~----~~~~~L~~L~L~~N~l~~-l~~--- 218 (622)
T 3g06_A 158 -ALPSELCKLWAYNNQ---LTSLP---MLPSGLQELSVSDN----QLASLP----TLPSELYKLWAYNNRLTS-LPA--- 218 (622)
T ss_dssp -CCCTTCCEEECCSSC---CSCCC---CCCTTCCEEECCSS----CCSCCC----CCCTTCCEEECCSSCCSS-CCC---
T ss_pred -CccCCCCEEECCCCC---CCCCc---ccCCCCcEEECCCC----CCCCCC----CccchhhEEECcCCcccc-cCC---
Confidence 123445555555552 22233 33456666666654 122211 124566677777766542 221
Q ss_pred CCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCCCCCCchhccCCCCCcE
Q 003399 712 KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNK 791 (823)
Q Consensus 712 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~ 791 (823)
.+++|+.|+|++|.+.+ ++ ..+++|+.|++++| .+..+|. .+++|+.|++++|. ++.+|..+.++++|+.
T Consensus 219 ~~~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS--LP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETT 288 (622)
T ss_dssp CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCE
T ss_pred CCCCCCEEEccCCccCc--CC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCE
Confidence 24667777777666554 22 45567777777766 4555554 56677777777764 5566766777777777
Q ss_pred EEecCCC
Q 003399 792 FDCWWPQ 798 (823)
Q Consensus 792 L~l~~c~ 798 (823)
|++++|+
T Consensus 289 L~L~~N~ 295 (622)
T 3g06_A 289 VNLEGNP 295 (622)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 7777765
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.8e-19 Score=190.21 Aligned_cols=240 Identities=20% Similarity=0.172 Sum_probs=170.7
Q ss_pred EEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc---cccccCccccceeeccCC
Q 003399 477 AVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY---PSGIENLFLLRYLKLNIP 553 (823)
Q Consensus 477 sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l---p~~i~~L~~Lr~L~L~~~ 553 (823)
...+......+....++++.|.+.++... .++...|.++++|++|+|++|.+..+ |..+..+.+|++|++++|
T Consensus 13 ~c~~~~l~~ip~~~~~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 13 RCNSKGLTSVPTGIPSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp ECCSSCCSSCCSCCCTTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EcCCCCcccCCCCCCCCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 33333333343444789999999988763 34556789999999999999998754 677888999999999999
Q ss_pred CCcccchhhhhcCCCccEEeCCCCcccccch--hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccc
Q 003399 554 SLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDI 631 (823)
Q Consensus 554 ~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~ 631 (823)
.+..+|..+ .++++|++|++++|.+..+|. .+..+++|++|++++|.+... ....
T Consensus 89 ~i~~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~ 145 (306)
T 2z66_A 89 GVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----------------------FNGI 145 (306)
T ss_dssp SEEEEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC----------------------STTT
T ss_pred ccccChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc----------------------chhh
Confidence 999999987 999999999999999998864 689999999999999876431 1122
Q ss_pred cCCCCccceEEeecccccchh-hHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccc
Q 003399 632 LGRLPNLRNLRIQGDLSYNQS-LLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTL 710 (823)
Q Consensus 632 l~~l~~L~~L~i~~~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l 710 (823)
+..+++|+.|+++++. ... .+|..+..+++|+.|++++| .+..+.......+++|+.|++++|.+.......+
T Consensus 146 ~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp TTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred cccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEECCCC----CcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 7788999999999874 222 35566777777777777654 3444433344455666666666666655444456
Q ss_pred cCCCCCCeEEeecCccCCccccccCCCCC-cccEEeeecCC
Q 003399 711 EKLPLLQVLKLKQNSYSGRKLTCGSYGFP-NLKVLHLKSML 750 (823)
Q Consensus 711 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~ 750 (823)
..+++|+.|+|++|.+.+ ..+..+..+| +|+.|++++++
T Consensus 220 ~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTCTTCCEEECTTSCCCB-CSSSSCCCCCTTCCEEECTTCC
T ss_pred cCcccCCEeECCCCCCcc-cCHHHHHhhhccCCEEEccCCC
Confidence 666666666666665544 2233344443 56666666553
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.1e-18 Score=196.43 Aligned_cols=223 Identities=19% Similarity=0.204 Sum_probs=118.8
Q ss_pred CcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeec
Q 003399 520 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 597 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 597 (823)
++|++|+|++|.+..+ |..+.++.+|++|+|++|.+..+++..+.++.+|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 3455555555555533 34455555555555555555555433335555555555555555555433 455555555555
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
++|.+... ....+..+++|+.|+++++. .
T Consensus 155 ~~N~l~~~----------------------~~~~~~~l~~L~~L~l~~~~-----------------------------~ 183 (452)
T 3zyi_A 155 RNNPIESI----------------------PSYAFNRVPSLMRLDLGELK-----------------------------K 183 (452)
T ss_dssp CSCCCCEE----------------------CTTTTTTCTTCCEEECCCCT-----------------------------T
T ss_pred CCCCccee----------------------CHhHHhcCCcccEEeCCCCC-----------------------------C
Confidence 55543210 00114455555555555432 2
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce-e
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-T 756 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~ 756 (823)
+..+....+..+++|+.|+|++|.+.. .+.+..+++|+.|+|++|.+.+ ..+..+..+++|+.|+|+++. +..+ +
T Consensus 184 l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 259 (452)
T 3zyi_A 184 LEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLKKLWVMNSQ-VSLIER 259 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSS--CCCCTTCTTCCEEECTTSCCSE-ECGGGGTTCTTCCEEECTTSC-CCEECT
T ss_pred ccccChhhccCCCCCCEEECCCCcccc--cccccccccccEEECcCCcCcc-cCcccccCccCCCEEEeCCCc-CceECH
Confidence 333322223345556666666665533 2345666666666666665554 234455666666777666653 3333 3
Q ss_pred ecccccccccEEEeecCCCCCCCch-hccCCCCCcEEEecCCC
Q 003399 757 MGNAAMPKLECLIINPCAYLKKMPE-QLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 757 ~~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L~~L~l~~c~ 798 (823)
..+..+++|+.|++++|. ++.+|. .+..+++|+.|+++++|
T Consensus 260 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 345566777777777664 444443 35566777777776644
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=194.63 Aligned_cols=263 Identities=17% Similarity=0.087 Sum_probs=171.1
Q ss_pred CccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCCCcccch
Q 003399 482 DDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPS 560 (823)
Q Consensus 482 ~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~ 560 (823)
.....+....+++++|.+.++... .+....|.++++|++|++++|.+..+ |..++++.+|++|++++|.+..+|.
T Consensus 42 ~l~~iP~~~~~~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 42 SLNSIPSGLTEAVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TCSSCCTTCCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred CcccccccccccCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 333343444789999999988763 34555789999999999999999866 5679999999999999999999999
Q ss_pred hhhhcCCCccEEeCCCCcccccch--hhcCCCCCceeeccCcc-cCCCCCCCcCCCcccceeeccCCCcccccccCCCCc
Q 003399 561 SLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRHLNFGSIT-LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPN 637 (823)
Q Consensus 561 ~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~-~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~ 637 (823)
..++++++|++|++++|.+..+|. .+.++++|++|++++|. +....... ++.+++
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----------------------~~~l~~ 175 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD----------------------FAGLTF 175 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT----------------------TTTCCE
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH----------------------ccCCCC
Confidence 855999999999999999999987 68999999999999984 33211113 444555
Q ss_pred cceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccc---cCCC
Q 003399 638 LRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTL---EKLP 714 (823)
Q Consensus 638 L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l---~~l~ 714 (823)
|+.|+++++. .....+..+..+++|++|++++|. +..+.-.....+++|+.|++++|.+....+..+ ...+
T Consensus 176 L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 176 LEELEIDASD--LQSYEPKSLKSIQNVSHLILHMKQ----HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp EEEEEEEETT--CCEECTTTTTTCSEEEEEEEECSC----STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCEEECCCCC--cCccCHHHHhccccCCeecCCCCc----cccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 5555555442 112223444555555555555431 111110001224556666666665544332222 2355
Q ss_pred CCCeEEeecCccCCc---cccccCCCCCcccEEeeecCCCCcceeecc-cccccccEEEeecCCCCC
Q 003399 715 LLQVLKLKQNSYSGR---KLTCGSYGFPNLKVLHLKSMLWLEEWTMGN-AAMPKLECLIINPCAYLK 777 (823)
Q Consensus 715 ~L~~L~L~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~-~~lp~L~~L~i~~C~~l~ 777 (823)
.++.++|.++.+.+. .++..+..+++|+.|++++| .+..+|... +.+++|+.|++++|+...
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 666666766554432 13334556777777777776 355666553 667777777777776444
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=193.59 Aligned_cols=223 Identities=19% Similarity=0.218 Sum_probs=114.9
Q ss_pred CcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeec
Q 003399 520 KLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNF 597 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l 597 (823)
+++++|+|++|.+..++ ..+.++.+|++|+|++|.+..+++..+.++.+|++|+|++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45566666666655443 455566666666666666665554433566666666666666665543 3555666666666
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
++|.+... ....+..+++|+.|+++++. .
T Consensus 144 ~~N~i~~~----------------------~~~~~~~l~~L~~L~l~~~~-----------------------------~ 172 (440)
T 3zyj_A 144 RNNPIESI----------------------PSYAFNRIPSLRRLDLGELK-----------------------------R 172 (440)
T ss_dssp CSCCCCEE----------------------CTTTTTTCTTCCEEECCCCT-----------------------------T
T ss_pred CCCccccc----------------------CHHHhhhCcccCEeCCCCCC-----------------------------C
Confidence 55544310 01114556666666665542 2
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce-e
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-T 756 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-~ 756 (823)
+..+....+..+++|+.|+|++|.+.. .+.+..+++|+.|+|++|.+.+ ..+..+..+++|+.|+|+++. +..+ +
T Consensus 173 l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 248 (440)
T 3zyj_A 173 LSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQ-IQVIER 248 (440)
T ss_dssp CCEECTTTTTTCSSCCEEECTTSCCSS--CCCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCC-CCEECT
T ss_pred cceeCcchhhcccccCeecCCCCcCcc--ccccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCc-eeEECh
Confidence 222222222334455555555555432 2245555566666666554443 223444555666666666553 3333 2
Q ss_pred ecccccccccEEEeecCCCCCCCch-hccCCCCCcEEEecCCC
Q 003399 757 MGNAAMPKLECLIINPCAYLKKMPE-QLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 757 ~~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L~~L~l~~c~ 798 (823)
..+..+++|+.|++++|. ++.+|. .+..+++|+.|+++++|
T Consensus 249 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 334556666666666664 334433 34556666666665543
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.8e-18 Score=203.44 Aligned_cols=133 Identities=19% Similarity=0.137 Sum_probs=115.6
Q ss_pred cccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhh
Q 003399 486 CLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLS 564 (823)
Q Consensus 486 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 564 (823)
.|....+.++.|.+.++... .+.+..|.++++|++|+|++|.++.+|. .|.+|++|++|+|++|+++.+|+..|+
T Consensus 46 vP~~lp~~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CCSSSCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred cCCCCCcCCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 33444678999999998763 4566789999999999999999998865 689999999999999999999988769
Q ss_pred cCCCccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeecc
Q 003399 565 NLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISAL 622 (823)
Q Consensus 565 ~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~ 622 (823)
+|++|++|+|++|+++.+|. .++++++|++|++++|.+.....| .++++..|+.+++.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999999999999999976 489999999999999998876666 77778888888876
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=3.8e-20 Score=197.81 Aligned_cols=247 Identities=15% Similarity=0.072 Sum_probs=155.3
Q ss_pred chHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCC
Q 003399 511 DWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKM 589 (823)
Q Consensus 511 ~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L 589 (823)
.+...+..+++|++|+|++|.+..++ ..+.++.+|++|+|++|.+..+++ + +.+++|++|++++|.+..+|. +
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~----~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----G 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE----C
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC----C
Confidence 34466777788888888888887654 578888888888888888877665 5 888888888888888877663 3
Q ss_pred CCCceeeccCcccCCCCCCCcCCCcccceeeccCC-Cccc-ccccCCCCccceEEeecccccchhhHHHhh-cCCCCCcE
Q 003399 590 NKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCCT-EDILGRLPNLRNLRIQGDLSYNQSLLSKSL-CRLSCLES 666 (823)
Q Consensus 590 ~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~~~-~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l-~~l~~L~~ 666 (823)
++|++|++++|.+..... ..+++|+.+++..+ ...+ +..++.+++|+.|+++++. .....+..+ ..+++|+.
T Consensus 99 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEH 173 (317)
T ss_dssp TTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCE
T ss_pred CCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCE
Confidence 788888888887654221 12344555555421 1111 2225566777777777664 112222233 35667777
Q ss_pred EEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEee
Q 003399 667 LKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHL 746 (823)
Q Consensus 667 L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L 746 (823)
|++++| .+..+. +...+++|+.|++++|.+.. .++.+..+++|+.|+|++|.+.. ++..+..+++|+.|++
T Consensus 174 L~L~~N----~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 174 LNLQYN----FIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDL 244 (317)
T ss_dssp EECTTS----CCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEEC
T ss_pred EECCCC----cCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEc
Confidence 777654 344432 22346677777777776643 33446667777777777666553 4555566677777777
Q ss_pred ecCCCC-cceeecccccccccEEEeecCCCCC
Q 003399 747 KSMLWL-EEWTMGNAAMPKLECLIINPCAYLK 777 (823)
Q Consensus 747 ~~~~~l-~~~~~~~~~lp~L~~L~i~~C~~l~ 777 (823)
++|+.. ..++...+.+++|+.|.+.+|+.++
T Consensus 245 ~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 776533 2444555666777777776665544
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.9e-19 Score=190.99 Aligned_cols=258 Identities=13% Similarity=0.090 Sum_probs=136.8
Q ss_pred CcceEEEccCCCCcccccc-ccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeecc
Q 003399 520 KLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFG 598 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 598 (823)
..+++++++.+.+...+.. +..+++|++|+|++|.+..+++..++++++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 4567788888877654443 4457799999999999998886545999999999999999988765 8999999999999
Q ss_pred CcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCC
Q 003399 599 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 678 (823)
Q Consensus 599 ~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 678 (823)
+|.+.. +..+.+|+.+.+..+...-.. ...+++|+.|+++++. .....+..+..+++|+.|++++| .+
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l 156 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLN----EI 156 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTS----CC
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCC----CC
Confidence 997653 111234444444421111111 2234445555555442 11111223344444444444432 23
Q ss_pred cEEeeCCc-CcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee
Q 003399 679 SKIALAEY-LFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM 757 (823)
Q Consensus 679 ~~L~l~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~ 757 (823)
..+..... ..+++|+.|++++|.+... +....+++|+.|+|++|.+.+ ++..+..+++|+.|++++| .+..+|.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCC-cccchhh
Confidence 33322222 1234444444444443221 222234444444444444332 2222334444444444444 2334444
Q ss_pred cccccccccEEEeecCCCC-CCCchhccCCCCCcEEEec
Q 003399 758 GNAAMPKLECLIINPCAYL-KKMPEQLWCIKSLNKFDCW 795 (823)
Q Consensus 758 ~~~~lp~L~~L~i~~C~~l-~~lp~~l~~l~~L~~L~l~ 795 (823)
.+..+++|+.|++++|+.. ..+|..+..+++|+.|++.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 4444444444444444433 2334444444444444443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=3.4e-18 Score=192.27 Aligned_cols=239 Identities=21% Similarity=0.191 Sum_probs=169.5
Q ss_pred EEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCC
Q 003399 477 AVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSL 555 (823)
Q Consensus 477 sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i 555 (823)
...+......+....++++.|.+.++... .+.+..|.++++|++|+|++|.+..++ ..+.++.+|++|+|++|.+
T Consensus 60 ~c~~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 60 VCTRRGLSEVPQGIPSNTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCccCCCCCCCccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 44433334443444788999999888763 345567899999999999999988664 6788999999999999999
Q ss_pred cccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeeccC-CCccccccc
Q 003399 556 KSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALH-PCCCTEDIL 632 (823)
Q Consensus 556 ~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~~-~~~~~~~~l 632 (823)
..+|+..+.++++|++|+|++|.+..+|. .+.++++|++|++++|.......+ .+.++.+|+.+++.. ....++. +
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~ 214 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-L 214 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-c
Confidence 99998865899999999999999998875 588999999999998654333333 566677777777662 2333444 6
Q ss_pred CCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccC
Q 003399 633 GRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEK 712 (823)
Q Consensus 633 ~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 712 (823)
..+++|+.|+++++. .....+..+.++++|+.|++++| .+..+.......+++|+.|+|++|.+.......+..
T Consensus 215 ~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 215 TPLVGLEELEMSGNH--FPEIRPGSFHGLSSLKKLWVMNS----QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp TTCTTCCEEECTTSC--CSEECGGGGTTCTTCCEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred cccccccEEECcCCc--CcccCcccccCccCCCEEEeCCC----cCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 677777777777764 23333556667777777777654 455554444455667777777777766555555666
Q ss_pred CCCCCeEEeecCcc
Q 003399 713 LPLLQVLKLKQNSY 726 (823)
Q Consensus 713 l~~L~~L~L~~~~~ 726 (823)
+++|+.|+|++|.+
T Consensus 289 l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 289 LRYLVELHLHHNPW 302 (452)
T ss_dssp CTTCCEEECCSSCE
T ss_pred ccCCCEEEccCCCc
Confidence 77777777776543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=8.9e-19 Score=184.22 Aligned_cols=249 Identities=19% Similarity=0.162 Sum_probs=147.1
Q ss_pred CCcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCc-cccc-chhhcCCCCCcee
Q 003399 519 FKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSY-IDHT-ADEFWKMNKLRHL 595 (823)
Q Consensus 519 ~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L 595 (823)
.+.|++|+++++.+..+| ..+..+.+|++|++++|.+..+++..++++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 356777777777777555 356777777777777777776633333777777777777774 6666 4567777777777
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKM 675 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 675 (823)
++++|.+.... +..+..+++|+.|+++++. .....+..+..+++|+.|++++|
T Consensus 111 ~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n--- 163 (285)
T 1ozn_A 111 HLDRCGLQELG----------------------PGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGN--- 163 (285)
T ss_dssp ECTTSCCCCCC----------------------TTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSS---
T ss_pred ECCCCcCCEEC----------------------HhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCC---
Confidence 77777654321 1225566677777776663 11112234566677777777654
Q ss_pred CCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce
Q 003399 676 PRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW 755 (823)
Q Consensus 676 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 755 (823)
.+..+.......+++|+.|++++|.+....+..++.+++|+.|++++|.+.+ ..+..+..+++|+.|++++++..-..
T Consensus 164 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 164 -RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred -cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCC
Confidence 3444443334556777777777777766666677777788888887776665 22334566777777777776521111
Q ss_pred eecccccccccEEEeecCCCCCCCchhccC--CCCCcEEEecCC
Q 003399 756 TMGNAAMPKLECLIINPCAYLKKMPEQLWC--IKSLNKFDCWWP 797 (823)
Q Consensus 756 ~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~--l~~L~~L~l~~c 797 (823)
+ ....+..|+.+........-..|..+.. +..+...++.+|
T Consensus 242 ~-~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 242 R-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp G-GHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred C-cHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 1 0011223444444443333344544322 344555555555
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=8.5e-18 Score=188.35 Aligned_cols=306 Identities=19% Similarity=0.134 Sum_probs=193.5
Q ss_pred CCCceEEEEEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCcccccee
Q 003399 469 GKNAKRLNAVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYL 548 (823)
Q Consensus 469 ~~~~r~l~sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L 548 (823)
....+++ .+..+...... ...++|++|.+.++.... ++ .|.++++|++|++++|.+..+|..+ .+|++|
T Consensus 110 ~~~L~~L-~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~----lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L 178 (454)
T 1jl5_A 110 PQSLKSL-LVDNNNLKALS-DLPPLLEYLGVSNNQLEK----LP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFI 178 (454)
T ss_dssp CTTCCEE-ECCSSCCSCCC-SCCTTCCEEECCSSCCSS----CC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred cCCCcEE-ECCCCccCccc-CCCCCCCEEECcCCCCCC----Cc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEE
Confidence 3678888 88766554321 124789999998887642 22 3889999999999999998888654 489999
Q ss_pred eccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-Ccc
Q 003399 549 KLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCC 627 (823)
Q Consensus 549 ~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-~~~ 627 (823)
++++|.+..+| ++ +++++|++|++++|.+..+|... ++|++|++++|.+.. .|.++++..|+.+++..+ ...
T Consensus 179 ~L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~--lp~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 179 AAGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEE--LPELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp ECCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSS
T ss_pred ECcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCc--ccccCCCCCCCEEECCCCcCCc
Confidence 99999999988 56 99999999999999988887643 589999999998873 456888999999988842 222
Q ss_pred cccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC------CCCCCcEEeeCCc------CcccCccEe
Q 003399 628 TEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES------KMPRLSKIALAEY------LFPHSLTHL 695 (823)
Q Consensus 628 ~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~------~~~~L~~L~l~~~------~~~~~L~~L 695 (823)
++. .+++|+.|+++++. ...+|.. .++|+.|++++|. .+++++.|.+.++ ..+++|+.|
T Consensus 252 l~~---~~~~L~~L~l~~N~---l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L 322 (454)
T 1jl5_A 252 LPD---LPPSLEALNVRDNY---LTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 322 (454)
T ss_dssp CCS---CCTTCCEEECCSSC---CSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEE
T ss_pred ccc---cccccCEEECCCCc---ccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEE
Confidence 332 35789999998874 2233332 3789999998863 2368888888776 223699999
Q ss_pred EeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCc--ceeeccccc-----------
Q 003399 696 SFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLE--EWTMGNAAM----------- 762 (823)
Q Consensus 696 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~~~~~~~~l----------- 762 (823)
++++|.+.. .+. .+++|+.|++++|.+.. ++. .+++|+.|++++|.... .+|..++.+
T Consensus 323 ~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~ 393 (454)
T 1jl5_A 323 NVSNNKLIE-LPA---LPPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393 (454)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred ECCCCcccc-ccc---cCCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence 999999864 332 26899999999888774 443 57999999999986433 456666666
Q ss_pred --ccccEEEeecCCCCC--CCchhccCCCCCcEEEecCCC-----HHHHHHhcccCCcceeee
Q 003399 763 --PKLECLIINPCAYLK--KMPEQLWCIKSLNKFDCWWPQ-----PELRQKLREFEDKEQYGV 816 (823)
Q Consensus 763 --p~L~~L~i~~C~~l~--~lp~~l~~l~~L~~L~l~~c~-----~~~~~~~~~~~~~~~~~i 816 (823)
++|+.|++++|+... .+|. +|+.|.+.+|. +.+.+.+.+.....|...
T Consensus 394 ~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450 (454)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHhhhccchhhhhc
Confidence 899999999998544 5564 34455555543 234445555444444433
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=3.9e-18 Score=191.09 Aligned_cols=241 Identities=17% Similarity=0.195 Sum_probs=166.8
Q ss_pred EEEEEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccC
Q 003399 474 RLNAVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNI 552 (823)
Q Consensus 474 ~l~sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~ 552 (823)
.+ ...+......+....++++.|.+.++... .+....|.++++|++|+|++|.+..++ ..+.++.+|++|+|++
T Consensus 47 ~v-~c~~~~l~~iP~~~~~~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 47 KV-ICVRKNLREVPDGISTNTRLLNLHENQIQ----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp EE-ECCSCCCSSCCSCCCTTCSEEECCSCCCC----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred EE-EeCCCCcCcCCCCCCCCCcEEEccCCcCC----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44 44444444444444788899999887763 344567889999999999999988665 6788999999999999
Q ss_pred CCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeeccC-CCcccc
Q 003399 553 PSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALH-PCCCTE 629 (823)
Q Consensus 553 ~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~~-~~~~~~ 629 (823)
|.+..+|+..+..+++|++|+|++|.+..+|. .+.++++|++|++++|.......+ .+.++.+|+.+++.. ....++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99999988655899999999999999988865 588899999999988654333333 456666666666662 233444
Q ss_pred cccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCccc
Q 003399 630 DILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPT 709 (823)
Q Consensus 630 ~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~ 709 (823)
. +..+++|+.|+++++. .....+..+.++++|+.|++++| .+..+....+..+++|+.|+|++|.+.......
T Consensus 202 ~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNH--LSAIRPGSFQGLMHLQKLWMIQS----QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp C-CTTCSSCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTC----CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred c-cCCCcccCEEECCCCc--cCccChhhhccCccCCEEECCCC----ceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 4 6666777777777663 22233455666677777776654 455554444455666777777777665555555
Q ss_pred ccCCCCCCeEEeecCcc
Q 003399 710 LEKLPLLQVLKLKQNSY 726 (823)
Q Consensus 710 l~~l~~L~~L~L~~~~~ 726 (823)
+..+++|+.|+|++|.+
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 66667777777766543
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3e-19 Score=202.22 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=137.2
Q ss_pred CCCcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceee
Q 003399 518 MFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLN 596 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 596 (823)
.+++|++|+|++|.+..+ |..++.+++|++|+|++|.+...++ + +.+++|++|+|++|.+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 444888888888888765 4678888888888888888887665 5 888888888888888887764 37888888
Q ss_pred ccCcccCCCCCCCcCCCcccceeeccCCC--cccccccCCCCccceEEeecccccchhhHHHhhc-CCCCCcEEEeecCC
Q 003399 597 FGSITLPAHPGKYCGSLENLNFISALHPC--CCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLC-RLSCLESLKLANES 673 (823)
Q Consensus 597 l~~~~~~~~~~~~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~~ 673 (823)
+++|.+..... ..+.+|..+++..+. ...+..++.+++|+.|+++++. .....|..+. .+++|+.|++++|
T Consensus 106 L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls~N- 179 (487)
T 3oja_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYN- 179 (487)
T ss_dssp CCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTS-
T ss_pred CcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecCCC-
Confidence 88887754221 123344444444211 1112224556666666666553 2222333333 4566666666544
Q ss_pred CCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCC-
Q 003399 674 KMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL- 752 (823)
Q Consensus 674 ~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l- 752 (823)
.+..+. +...+++|+.|+|++|.+.. .++.++.+++|+.|+|++|.+.+ ++..+..+++|+.|++++|+..
T Consensus 180 ---~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 180 ---FIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp ---CCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCH
T ss_pred ---cccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcC
Confidence 233331 11235566666666666543 33345566666666666555553 4444555566666666665432
Q ss_pred cceeecccccccccEEEee
Q 003399 753 EEWTMGNAAMPKLECLIIN 771 (823)
Q Consensus 753 ~~~~~~~~~lp~L~~L~i~ 771 (823)
..+|...+.++.|+.|.+.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 1334444555555555554
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=2e-20 Score=211.24 Aligned_cols=306 Identities=18% Similarity=0.077 Sum_probs=175.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcc-cccccc-Ccc----ccceeeccCCCCc-----ccc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQ-YPSGIE-NLF----LLRYLKLNIPSLK-----SLP 559 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~-lp~~i~-~L~----~Lr~L~L~~~~i~-----~lp 559 (823)
+++|++|.+.++.........+...+..+++|++|+|++|.+.. .+..+. .+. +|++|++++|.+. .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 67777777777664210111234556677777777777777652 222222 233 5777777777766 345
Q ss_pred hhhhhcCCCccEEeCCCCccccc-chhhc-----CCCCCceeeccCcccCCCCC---C-CcCCCcccceeeccCCCcc--
Q 003399 560 SSLLSNLLNLYTLDMPFSYIDHT-ADEFW-----KMNKLRHLNFGSITLPAHPG---K-YCGSLENLNFISALHPCCC-- 627 (823)
Q Consensus 560 ~~i~~~L~~L~~L~L~~~~l~~l-p~~i~-----~L~~L~~L~l~~~~~~~~~~---~-~i~~L~~L~~l~~~~~~~~-- 627 (823)
..+ .++++|++|++++|.+... +..+. .+++|++|++++|.+..... + .+.++++|+.+++..+...
T Consensus 107 ~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 555 7777777777777766532 22221 24567777777776554221 1 2333566666666532210
Q ss_pred -ccc---cc-CCCCccceEEeecccc--cchhhHHHhhcCCCCCcEEEeecCC---------------CCCCCcEEeeCC
Q 003399 628 -TED---IL-GRLPNLRNLRIQGDLS--YNQSLLSKSLCRLSCLESLKLANES---------------KMPRLSKIALAE 685 (823)
Q Consensus 628 -~~~---~l-~~l~~L~~L~i~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~---------------~~~~L~~L~l~~ 685 (823)
... .+ ..+++|+.|++++|.- .....++..+..+++|++|++++|. ..++|+.|.+.+
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 111 01 1345677777777641 1122456666677777777777642 246677777766
Q ss_pred c--------------CcccCccEeEeecccCCCCCcccccC-----CCCCCeEEeecCccCCcc---ccccCCCCCcccE
Q 003399 686 Y--------------LFPHSLTHLSFSNTVLMDDPMPTLEK-----LPLLQVLKLKQNSYSGRK---LTCGSYGFPNLKV 743 (823)
Q Consensus 686 ~--------------~~~~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~ 743 (823)
+ ..+++|++|++++|.+....+..+.. .++|+.|+|++|.+.+.. ++..+..+++|+.
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 5 12567777777777664433333322 257777777777665432 2333445677777
Q ss_pred EeeecCCCCcce-eeccc-----ccccccEEEeecCCCCC----CCchhccCCCCCcEEEecCCC
Q 003399 744 LHLKSMLWLEEW-TMGNA-----AMPKLECLIINPCAYLK----KMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 744 L~L~~~~~l~~~-~~~~~-----~lp~L~~L~i~~C~~l~----~lp~~l~~l~~L~~L~l~~c~ 798 (823)
|++++|. +... +..+. ..++|+.|++++|..-. .+|..+..+++|++|++++|+
T Consensus 346 L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 346 LQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp EECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred EEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 7777763 3322 11111 25677888887775322 566677777778888777776
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=9.6e-19 Score=198.01 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=124.8
Q ss_pred cccccccCcc----ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCC
Q 003399 534 QYPSGIENLF----LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKY 609 (823)
Q Consensus 534 ~lp~~i~~L~----~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~ 609 (823)
.+|..+..+. +|++|+|++|.+..+|+..++++++|++|+|++|.+..+++ +..+++|++|++++|.+...
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---- 95 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---- 95 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE----
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC----
Confidence 4555555544 89999999999998876544999999999999999987765 99999999999999987541
Q ss_pred cCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcC-c
Q 003399 610 CGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYL-F 688 (823)
Q Consensus 610 i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~-~ 688 (823)
....+|+.+++..+...-.. ...+++|+.|+++++. .....|..+..+++|+.|++++| .+......... .
T Consensus 96 -~~~~~L~~L~L~~N~l~~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~l~~~ 167 (487)
T 3oja_A 96 -LVGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLN----EIDTVNFAELAAS 167 (487)
T ss_dssp -EECTTCCEEECCSSCCCCEE-ECCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTS----CCCEEEGGGGGGG
T ss_pred -CCCCCcCEEECcCCcCCCCC-ccccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCC----CCCCcChHHHhhh
Confidence 11233444444421111111 2234445555554442 11222333444444444444433 23332222221 3
Q ss_pred ccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEE
Q 003399 689 PHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECL 768 (823)
Q Consensus 689 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L 768 (823)
+++|+.|+|++|.+... +.+..+++|+.|+|++|.+.+ ++..+..+++|+.|+|++| .+..+|..++.+++|+.|
T Consensus 168 l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHF 242 (487)
T ss_dssp TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEE
T ss_pred CCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEE
Confidence 34444444444443221 222334444444444444433 2222334444444444443 233344444444444444
Q ss_pred EeecCCCC-CCCchhccCCCCCcEEE
Q 003399 769 IINPCAYL-KKMPEQLWCIKSLNKFD 793 (823)
Q Consensus 769 ~i~~C~~l-~~lp~~l~~l~~L~~L~ 793 (823)
++++|+.. ..+|..+..+++|+.+.
T Consensus 243 ~l~~N~l~c~~~~~~~~~l~~L~~l~ 268 (487)
T 3oja_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVA 268 (487)
T ss_dssp ECTTCCBCHHHHHHHHTTCHHHHHHH
T ss_pred EcCCCCCcCcchHHHHHhCCCCcEEe
Confidence 44444432 23333344444444333
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=7.7e-19 Score=204.98 Aligned_cols=322 Identities=12% Similarity=0.030 Sum_probs=176.7
Q ss_pred CCceEEEEEEcCCcccc-cccc---CCC-ccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcc-----ccccc
Q 003399 470 KNAKRLNAVERWDDFAC-LDDY---DSQ-LHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQ-----YPSGI 539 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~-~~~~---~~~-LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~-----lp~~i 539 (823)
...++| .+..+..... .... +++ |+.|.+.++... ....+.....++++|++|+|++|.+.. ++..+
T Consensus 112 ~~L~~L-~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 112 RQLKSV-HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp TTCCEE-EEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCeE-EeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 346666 6665432211 1111 334 888888776531 122334555678888888888887542 34445
Q ss_pred cCccccceeeccCCCCc-----ccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCC--CC-CCcC
Q 003399 540 ENLFLLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAH--PG-KYCG 611 (823)
Q Consensus 540 ~~L~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~--~~-~~i~ 611 (823)
..+++|++|+++++.+. .++..+ .++++|++|++++|.+..+|..+..+++|++|+++.+..... .. ..++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 56788888888888775 344434 778888888888888888888888888888888875322111 11 1444
Q ss_pred CCcccceeeccC-CCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCC----------CCCCCcE
Q 003399 612 SLENLNFISALH-PCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANES----------KMPRLSK 680 (823)
Q Consensus 612 ~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~~~~L~~ 680 (823)
.+.+|+.+.+.. ....++..+..+++|++|++++|. .....+...+..+++|+.|++..+. .+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 455555555442 223334435556666666666654 2223333444555666666655321 2445555
Q ss_pred EeeCC----------c------------CcccCccEeEeecccCCCCCcccccC-CCCCCeEEee---------------
Q 003399 681 IALAE----------Y------------LFPHSLTHLSFSNTVLMDDPMPTLEK-LPLLQVLKLK--------------- 722 (823)
Q Consensus 681 L~l~~----------~------------~~~~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~--------------- 722 (823)
|.+.. + ..+++|++|+++.+.++...+..++. +++|+.|+++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 55552 2 12455555555444443333333333 4555555553
Q ss_pred ------------------cCc--cCCccccccCCCCCcccEEeeecCCCCc--ceeecccccccccEEEeecCCCCC--C
Q 003399 723 ------------------QNS--YSGRKLTCGSYGFPNLKVLHLKSMLWLE--EWTMGNAAMPKLECLIINPCAYLK--K 778 (823)
Q Consensus 723 ------------------~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~~~~~~~~lp~L~~L~i~~C~~l~--~ 778 (823)
+|. +.+..+......+++|+.|+|++|. +. .++.....+++|+.|++++|+ +. .
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHH
Confidence 222 1211111111235556666665553 22 122233556777777777777 33 2
Q ss_pred CchhccCCCCCcEEEecCCC
Q 003399 779 MPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 779 lp~~l~~l~~L~~L~l~~c~ 798 (823)
++..+..+++|+.|++++|.
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhcCccCeeECcCCc
Confidence 34445567777777777776
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=7.8e-18 Score=177.01 Aligned_cols=219 Identities=21% Similarity=0.207 Sum_probs=168.9
Q ss_pred EEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCC-
Q 003399 477 AVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPS- 554 (823)
Q Consensus 477 sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~- 554 (823)
..........+....++++.|.+.++... .+....|..+++|++|+|++|.+..+ |..+..+.+|++|++++|.
T Consensus 17 ~c~~~~l~~ip~~~~~~l~~L~l~~n~i~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 17 SCPQQGLQAVPVGIPAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp ECCSSCCSSCCTTCCTTCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EcCcCCcccCCcCCCCCceEEEeeCCcCC----ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 33333333333334788999999887763 34556789999999999999999866 7789999999999999997
Q ss_pred CcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccC
Q 003399 555 LKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILG 633 (823)
Q Consensus 555 i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~ 633 (823)
+..+++..+.++++|++|++++|.+..+ |..+.++++|++|++++|.+..... ..++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~ 150 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----------------------DTFR 150 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------TTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----------------------hHhc
Confidence 8888554449999999999999999888 5668999999999999987754211 1256
Q ss_pred CCCccceEEeecccccchhhHH-HhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccC
Q 003399 634 RLPNLRNLRIQGDLSYNQSLLS-KSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEK 712 (823)
Q Consensus 634 ~l~~L~~L~i~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 712 (823)
.+++|+.|+++++. ...++ ..+..+++|+.|++++| .+..+.......+++|+.|++++|.+....+..+..
T Consensus 151 ~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 151 DLGNLTHLFLHGNR---ISSVPERAFRGLHSLDRLLLHQN----RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp TCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred cCCCccEEECCCCc---ccccCHHHhcCccccCEEECCCC----cccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 67778888887763 22333 34777888888888865 455555555567889999999999987766667999
Q ss_pred CCCCCeEEeecCccCC
Q 003399 713 LPLLQVLKLKQNSYSG 728 (823)
Q Consensus 713 l~~L~~L~L~~~~~~~ 728 (823)
+++|+.|+|++|.+..
T Consensus 224 l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred CcccCEEeccCCCccC
Confidence 9999999999887664
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=4.4e-19 Score=200.27 Aligned_cols=303 Identities=16% Similarity=0.080 Sum_probs=212.3
Q ss_pred CCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc-----cccccccCccccceeeccCCCCccc-chhhhhc
Q 003399 492 SQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKSL-PSSLLSN 565 (823)
Q Consensus 492 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~~ 565 (823)
+++++|.+.++... ...+...+..+++|++|+|++|.+. .++..+..+++|++|++++|.+... +..++..
T Consensus 3 ~~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 56788888776642 2335566899999999999999987 5678888999999999999998753 3344345
Q ss_pred CC----CccEEeCCCCccc-----ccchhhcCCCCCceeeccCcccCCCCCC----C-cCCCcccceeeccCCCc-----
Q 003399 566 LL----NLYTLDMPFSYID-----HTADEFWKMNKLRHLNFGSITLPAHPGK----Y-CGSLENLNFISALHPCC----- 626 (823)
Q Consensus 566 L~----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~~~----~-i~~L~~L~~l~~~~~~~----- 626 (823)
+. +|++|++++|.+. .+|..+..+++|++|++++|.+....+. . ...+.+|+.+++.....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 66 7999999999887 4688899999999999999987542211 1 12245677777773321
Q ss_pred -ccccccCCCCccceEEeeccccc--chhhHHHhhc-CCCCCcEEEeecCC--------------CCCCCcEEeeCCc--
Q 003399 627 -CTEDILGRLPNLRNLRIQGDLSY--NQSLLSKSLC-RLSCLESLKLANES--------------KMPRLSKIALAEY-- 686 (823)
Q Consensus 627 -~~~~~l~~l~~L~~L~i~~~~~~--~~~~l~~~l~-~l~~L~~L~l~~~~--------------~~~~L~~L~l~~~-- 686 (823)
.+...+..+++|+.|+++++.-. ....+...+. ..++|++|++++|. ..++|+.|.+.++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 12344677899999999988511 1122333332 35699999998863 3478888888876
Q ss_pred -------------CcccCccEeEeecccCCCC----CcccccCCCCCCeEEeecCccCCccc---ccc-CCCCCcccEEe
Q 003399 687 -------------LFPHSLTHLSFSNTVLMDD----PMPTLEKLPLLQVLKLKQNSYSGRKL---TCG-SYGFPNLKVLH 745 (823)
Q Consensus 687 -------------~~~~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~---~~~-~~~~~~L~~L~ 745 (823)
..+++|++|++++|.++.. .+..+..+++|+.|+|++|.+.+... ... ....++|+.|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 1367899999999987553 34556678999999999887654211 111 12346899999
Q ss_pred eecCCCCcc----eeecccccccccEEEeecCCCCCCC-ch----hccC-CCCCcEEEecCCC
Q 003399 746 LKSMLWLEE----WTMGNAAMPKLECLIINPCAYLKKM-PE----QLWC-IKSLNKFDCWWPQ 798 (823)
Q Consensus 746 L~~~~~l~~----~~~~~~~lp~L~~L~i~~C~~l~~l-p~----~l~~-l~~L~~L~l~~c~ 798 (823)
+++|..-.. ++..+..+++|+.|++++|. +... +. .+.. .++|++|++++|.
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 998853221 34445567899999999985 4322 22 2332 6799999999986
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=8.6e-17 Score=185.83 Aligned_cols=232 Identities=20% Similarity=0.133 Sum_probs=164.4
Q ss_pred CcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccC
Q 003399 520 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 599 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 599 (823)
..+++|+++++.++.+|..+. .+|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 357777777777777776665 677777777777777775 35677777777777777776 667777777777
Q ss_pred cccCCCCCCCcCCCcccceeeccCC-CcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCC
Q 003399 600 ITLPAHPGKYCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 678 (823)
Q Consensus 600 ~~~~~~~~~~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 678 (823)
|.+... |. .+.+|+.+++..+ ...++ ..+++|+.|++++|. ...+|. .+++|+.|++++| .+
T Consensus 111 N~l~~l--~~--~l~~L~~L~L~~N~l~~lp---~~l~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~N----~l 173 (622)
T 3g06_A 111 NPLTHL--PA--LPSGLCKLWIFGNQLTSLP---VLPPGLQELSVSDNQ---LASLPA---LPSELCKLWAYNN----QL 173 (622)
T ss_dssp CCCCCC--CC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCSS----CC
T ss_pred CcCCCC--CC--CCCCcCEEECCCCCCCcCC---CCCCCCCEEECcCCc---CCCcCC---ccCCCCEEECCCC----CC
Confidence 766542 21 3445555555522 12222 235889999998884 333332 3467888888865 33
Q ss_pred cEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeec
Q 003399 679 SKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG 758 (823)
Q Consensus 679 ~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~ 758 (823)
..+. ..+++|+.|++++|.+.. .+. .+++|+.|++++|.+.. ++ ..+++|+.|++++| .+..+|
T Consensus 174 ~~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N-~L~~lp-- 237 (622)
T 3g06_A 174 TSLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS--LP---ALPSGLKELIVSGN-RLTSLP-- 237 (622)
T ss_dssp SCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCSS-CCSCCC--
T ss_pred CCCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc--cC---CCCCCCCEEEccCC-ccCcCC--
Confidence 3332 347899999999998754 222 35899999999887764 33 34689999999998 577776
Q ss_pred ccccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 759 NAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 759 ~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
..+++|+.|++++|. ++.+|. .+++|+.|++++|.
T Consensus 238 -~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 238 -VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp -CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred -CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCC
Confidence 567999999999995 778887 67899999999986
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=8.1e-18 Score=196.29 Aligned_cols=305 Identities=16% Similarity=0.059 Sum_probs=203.3
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCC----cccchhhhhcC
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSL----KSLPSSLLSNL 566 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i----~~lp~~i~~~L 566 (823)
+++|++|.+..+.........+...+.++++|+.|++++|.+..+|..+..+++|++|+++.... ...+..+ ..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL-VFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC-CCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh-hcc
Confidence 56666666655544222223344556666777777777766666666666667777777664321 1333344 666
Q ss_pred CCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeeccCC--CcccccccCCCCccceEEe
Q 003399 567 LNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRI 643 (823)
Q Consensus 567 ~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~i 643 (823)
.+|+.|+++++....+|..+..+++|++|++++|.+...... .++++++|+.+.+... ...+......+++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 677777777665667777788899999999998875433222 3456777777766521 1223343467889999999
Q ss_pred ec----------ccccchhhHHHhhcCCCCCcEEEeecCC-----------CCCCCcEEeeCCc----------------
Q 003399 644 QG----------DLSYNQSLLSKSLCRLSCLESLKLANES-----------KMPRLSKIALAEY---------------- 686 (823)
Q Consensus 644 ~~----------~~~~~~~~l~~~l~~l~~L~~L~l~~~~-----------~~~~L~~L~l~~~---------------- 686 (823)
.+ |.......+......+++|++|+++.+. .+++|+.|.+.++
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 94 4433444555556678899999996542 3678999988531
Q ss_pred ---CcccCccEeEeeccc--CCCCCccccc-CCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcc--eeec
Q 003399 687 ---LFPHSLTHLSFSNTV--LMDDPMPTLE-KLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE--WTMG 758 (823)
Q Consensus 687 ---~~~~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--~~~~ 758 (823)
..+++|++|+++.|. ++...+..++ .+++|+.|+|++|.+++..++....++++|+.|+|++|+ +.. ++..
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~ 508 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAA 508 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHH
Confidence 237899999998764 4444444554 489999999998887765566666789999999999997 442 3434
Q ss_pred ccccccccEEEeecCCCCCC-CchhccCCCCCcEEEecCC
Q 003399 759 NAAMPKLECLIINPCAYLKK-MPEQLWCIKSLNKFDCWWP 797 (823)
Q Consensus 759 ~~~lp~L~~L~i~~C~~l~~-lp~~l~~l~~L~~L~l~~c 797 (823)
...+|+|+.|++++|..... +......+|.|....+...
T Consensus 509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 46799999999999983222 2223356788877777654
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.5e-18 Score=185.04 Aligned_cols=105 Identities=18% Similarity=0.057 Sum_probs=57.0
Q ss_pred ccCccEeEeecccCCC--CCc-ccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccc
Q 003399 689 PHSLTHLSFSNTVLMD--DPM-PTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKL 765 (823)
Q Consensus 689 ~~~L~~L~L~~~~l~~--~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L 765 (823)
+++|++|++++|.+.. ..+ ..+..+++|+.|+|++|.+.+.........+++|+.|++++|. ++.+|.... ++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L 276 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKL 276 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCc
Confidence 3445555555554431 111 1223556666666666655542211223345666666666653 445554433 667
Q ss_pred cEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 766 ECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 766 ~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+.|++++|. ++.+|. +..+++|+.|++++++
T Consensus 277 ~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 277 SVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred eEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 777777664 555555 6667777777776655
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=7.6e-18 Score=179.47 Aligned_cols=247 Identities=17% Similarity=0.207 Sum_probs=188.8
Q ss_pred HHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCc--ccchhhhh-------cCCCccEEeCCCCccc-ccc
Q 003399 514 KIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLK--SLPSSLLS-------NLLNLYTLDMPFSYID-HTA 583 (823)
Q Consensus 514 ~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~--~lp~~i~~-------~L~~L~~L~L~~~~l~-~lp 583 (823)
.++..++.|+.|+++++.+ .+|..+... |++|+|+++.+. .+|..+ . ++++|++|++++|.+. .+|
T Consensus 37 ~~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3456778899999999999 888877765 999999999885 477666 5 7999999999999988 568
Q ss_pred hhh--cCCCCCceeeccCcccCCCCCCCcCCC-----cccceeeccCC-Cc-ccccccCCCCccceEEeecccccchhhH
Q 003399 584 DEF--WKMNKLRHLNFGSITLPAHPGKYCGSL-----ENLNFISALHP-CC-CTEDILGRLPNLRNLRIQGDLSYNQSLL 654 (823)
Q Consensus 584 ~~i--~~L~~L~~L~l~~~~~~~~~~~~i~~L-----~~L~~l~~~~~-~~-~~~~~l~~l~~L~~L~i~~~~~~~~~~l 654 (823)
..+ ..+++|++|++++|.+... +..++.+ .+|+.+++..+ .. ..+..++.+++|+.|+++++.-.....+
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 776 8999999999999998875 3345544 78888888732 22 2224488999999999998852122234
Q ss_pred HHhh--cCCCCCcEEEeecCCCCCCCcEE---eeCCcCcccCccEeEeecccCCCCCc-ccccCCCCCCeEEeecCccCC
Q 003399 655 SKSL--CRLSCLESLKLANESKMPRLSKI---ALAEYLFPHSLTHLSFSNTVLMDDPM-PTLEKLPLLQVLKLKQNSYSG 728 (823)
Q Consensus 655 ~~~l--~~l~~L~~L~l~~~~~~~~L~~L---~l~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~L~~~~~~~ 728 (823)
+..+ ..+++|++|++++| .+..+ ...-...+++|+.|++++|.+....+ +.+..+++|+.|+|++|.+..
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N----~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNA----GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTS----CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred HHHHHhccCCCCCEEECCCC----cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 5555 78899999999876 23321 11111346899999999999877553 566778999999999998873
Q ss_pred ccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCCC
Q 003399 729 RKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAY 775 (823)
Q Consensus 729 ~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~ 775 (823)
++.... ++|+.|++++| .++.+|. +..+++|+.|++++++.
T Consensus 268 --ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 268 --VPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp --CCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred --hhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence 454433 89999999998 5777766 88999999999999873
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.7e-16 Score=168.54 Aligned_cols=189 Identities=21% Similarity=0.235 Sum_probs=102.6
Q ss_pred CCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeec
Q 003399 518 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNF 597 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 597 (823)
.++.|+.|+++++.+..+| .+..+.+|++|++++|.+..+|+ + .++++|++|++++|.+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 4566677777777666665 46667777777777777766666 4 67777777777777666665 4666777777777
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
++|.+... +. +..+++|+.|+++++. ...++. +..+++|+.|++++| .
T Consensus 115 ~~n~l~~~-----------------------~~-l~~l~~L~~L~l~~n~---l~~~~~-l~~l~~L~~L~l~~n----~ 162 (308)
T 1h6u_A 115 TSTQITDV-----------------------TP-LAGLSNLQVLYLDLNQ---ITNISP-LAGLTNLQYLSIGNA----Q 162 (308)
T ss_dssp TTSCCCCC-----------------------GG-GTTCTTCCEEECCSSC---CCCCGG-GGGCTTCCEEECCSS----C
T ss_pred CCCCCCCc-----------------------hh-hcCCCCCCEEECCCCc---cCcCcc-ccCCCCccEEEccCC----c
Confidence 66655431 11 4445555555555542 111111 444455555555443 1
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecC
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSM 749 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 749 (823)
+..+. ....+++|+.|++++|.+... +.+..+++|+.|+|++|.+.+.. .+..+++|+.|+++++
T Consensus 163 l~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 163 VSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp CCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEE
T ss_pred CCCCh--hhcCCCCCCEEECCCCccCcC--hhhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCC
Confidence 11111 023345555555555554321 22555556666666555554321 2445555555555554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.7e-16 Score=165.47 Aligned_cols=208 Identities=20% Similarity=0.213 Sum_probs=105.4
Q ss_pred cCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCcee
Q 003399 517 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHL 595 (823)
Q Consensus 517 ~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 595 (823)
..++.|+.|+++++.+..++. +..+++|++|++++|.+..++ .+ +++++|++|++++|.+..+|.. +..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345566666666666655543 566666666666666666554 34 6666666666666666665443 4566666666
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHH-HhhcCCCCCcEEEeecCCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLS-KSLCRLSCLESLKLANESK 674 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~ 674 (823)
++++|.+..... ..++.+++|+.|+++++. ...++ ..+..
T Consensus 115 ~L~~n~l~~~~~----------------------~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~-------------- 155 (272)
T 3rfs_A 115 VLVENQLQSLPD----------------------GVFDKLTNLTYLNLAHNQ---LQSLPKGVFDK-------------- 155 (272)
T ss_dssp ECTTSCCCCCCT----------------------TTTTTCTTCCEEECCSSC---CCCCCTTTTTT--------------
T ss_pred ECCCCcCCccCH----------------------HHhccCCCCCEEECCCCc---cCccCHHHhcc--------------
Confidence 666665432110 113445555555555442 11111 11222
Q ss_pred CCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcc
Q 003399 675 MPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEE 754 (823)
Q Consensus 675 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 754 (823)
+++|+.|++++|.+....+..++.+++|+.|++++|.+.+ ..+..+..+++|+.|++++|+.
T Consensus 156 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~--- 217 (272)
T 3rfs_A 156 --------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPW--- 217 (272)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB---
T ss_pred --------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEccCCCc---
Confidence 3344444444444443333334555555555555555443 1222234455555555555531
Q ss_pred eeecccccccccEEEeecCCCCCCCchhccCCCC
Q 003399 755 WTMGNAAMPKLECLIINPCAYLKKMPEQLWCIKS 788 (823)
Q Consensus 755 ~~~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~ 788 (823)
.+.+|+|+.|.+..+.....+|..+..++.
T Consensus 218 ----~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 ----DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ----CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ----cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 134555555555555544455554444433
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=5.3e-16 Score=161.48 Aligned_cols=80 Identities=25% Similarity=0.232 Sum_probs=47.2
Q ss_pred ceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccCc
Q 003399 522 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSI 600 (823)
Q Consensus 522 LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 600 (823)
++.++++++.++.+|..+. .+|++|++++|.+..+|+..++++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4566666666666665443 4566666666666666553336666666666666666666544 355666666666665
Q ss_pred ccC
Q 003399 601 TLP 603 (823)
Q Consensus 601 ~~~ 603 (823)
.+.
T Consensus 96 ~l~ 98 (270)
T 2o6q_A 96 KLQ 98 (270)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=5.4e-16 Score=162.97 Aligned_cols=200 Identities=20% Similarity=0.149 Sum_probs=112.7
Q ss_pred hcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCcee
Q 003399 516 YGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHL 595 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 595 (823)
+.++++|+.++++++.++.+|..+. .+|++|+|++|.+..+++..+.++++|++|+|++|.+..+|.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 3556667777777777776666554 4677777777777666544346777777777777776666553 567777777
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHH-HhhcCCCCCcEEEeecCCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLS-KSLCRLSCLESLKLANESK 674 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~ 674 (823)
++++|.+.. .| ..+..+++|+.|+++++. ...++ ..+..+++|+.|++++|
T Consensus 83 ~Ls~N~l~~--l~---------------------~~~~~l~~L~~L~l~~N~---l~~l~~~~~~~l~~L~~L~L~~N-- 134 (290)
T 1p9a_G 83 DLSHNQLQS--LP---------------------LLGQTLPALTVLDVSFNR---LTSLPLGALRGLGELQELYLKGN-- 134 (290)
T ss_dssp ECCSSCCSS--CC---------------------CCTTTCTTCCEEECCSSC---CCCCCSSTTTTCTTCCEEECTTS--
T ss_pred ECCCCcCCc--Cc---------------------hhhccCCCCCEEECCCCc---CcccCHHHHcCCCCCCEEECCCC--
Confidence 777665542 11 113444555555555442 11121 33445555555555443
Q ss_pred CCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCC
Q 003399 675 MPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML 750 (823)
Q Consensus 675 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 750 (823)
.+..+....+..+++|+.|+|++|.+.......+..+++|+.|+|++|.+.. ++.....+++|+.|.|.+++
T Consensus 135 --~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 135 --ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred --CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCC
Confidence 2222222222345566666666666654444445566666666666665553 44445555666666666554
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=5.6e-17 Score=174.81 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=118.3
Q ss_pred ceEEEccCCCCccccccccCc--cccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccc--cchhhcCCCCCceeec
Q 003399 522 LRVLDLGSLVLIQYPSGIENL--FLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDH--TADEFWKMNKLRHLNF 597 (823)
Q Consensus 522 LrvL~L~~~~l~~lp~~i~~L--~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l 597 (823)
++.|+++++.+. |..+..+ .++++|+++++.+...++.+ .++++|++|++++|.+.. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 445555544433 2333333 44555555555544444444 445555555555554432 3444455555555555
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
++|.+.. .....++.+++|+.|++++|.......++..+.++++|++|++++|. .
T Consensus 126 ~~~~l~~----------------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~---~ 180 (336)
T 2ast_B 126 EGLRLSD----------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF---D 180 (336)
T ss_dssp TTCBCCH----------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT---T
T ss_pred cCcccCH----------------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC---C
Confidence 5443321 01111344455555555544212222344444455555555554321 1
Q ss_pred CcEEeeC-CcCccc-CccEeEeecc--cCC-CCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCC
Q 003399 678 LSKIALA-EYLFPH-SLTHLSFSNT--VLM-DDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL 752 (823)
Q Consensus 678 L~~L~l~-~~~~~~-~L~~L~L~~~--~l~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 752 (823)
+....+. ....++ +|++|++++| .++ ...+..+..+|+|+.|++++|.......+..+..+++|+.|++++|..+
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 1111000 012345 6666666676 333 2234556789999999999888333234556678899999999998643
Q ss_pred cce-eecccccccccEEEeecC
Q 003399 753 EEW-TMGNAAMPKLECLIINPC 773 (823)
Q Consensus 753 ~~~-~~~~~~lp~L~~L~i~~C 773 (823)
... ...++.+|+|+.|++++|
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHHHHhcCCCCCEEeccCc
Confidence 321 124677999999999999
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=3.6e-17 Score=176.31 Aligned_cols=243 Identities=17% Similarity=0.161 Sum_probs=160.4
Q ss_pred HHhcCC--CcceEEEccCCCCccccccccCccccceeeccCCCCcc--cchhhhhcCCCccEEeCCCCccc-ccchhhcC
Q 003399 514 KIYGMF--KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS--LPSSLLSNLLNLYTLDMPFSYID-HTADEFWK 588 (823)
Q Consensus 514 ~~~~~~--~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~--lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~ 588 (823)
..+..+ +.+++|+++++.+...+..+..+.+|++|++++|.+.. +|..+ ..+++|++|++++|.+. ..|..+..
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 445555 77888888888877666667788888888888887763 66555 88888888888888776 45677888
Q ss_pred CCCCceeeccCc-ccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCC-CCcE
Q 003399 589 MNKLRHLNFGSI-TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLS-CLES 666 (823)
Q Consensus 589 L~~L~~L~l~~~-~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~-~L~~ 666 (823)
+++|++|++++| .+.. ..++..+..+++|+.|++++|.......++..+..++ +|++
T Consensus 141 ~~~L~~L~L~~~~~l~~---------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSE---------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CTTCSEEECTTCBSCCH---------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCCCCEEECCCCCCCCH---------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 888888888887 3321 1122335667778888887773233334666677777 8888
Q ss_pred EEeecCCCCCCCcEEeeC-CcCcccCccEeEeeccc-CCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEE
Q 003399 667 LKLANESKMPRLSKIALA-EYLFPHSLTHLSFSNTV-LMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVL 744 (823)
Q Consensus 667 L~l~~~~~~~~L~~L~l~-~~~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 744 (823)
|++++|. ..+..-.+. ....+++|++|++++|. ++...+..++.+++|+.|+|++|..........+..+++|+.|
T Consensus 200 L~l~~~~--~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 200 LNLSGYR--KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EECCSCG--GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEeCCCc--ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 8887541 011100000 11346788888888887 6666777889999999999998852222222345679999999
Q ss_pred eeecCCCCcceeeccccc-ccccEEEeecCCCCCCCchhcc
Q 003399 745 HLKSMLWLEEWTMGNAAM-PKLECLIINPCAYLKKMPEQLW 784 (823)
Q Consensus 745 ~L~~~~~l~~~~~~~~~l-p~L~~L~i~~C~~l~~lp~~l~ 784 (823)
++++| +..- ....+ .+|..|++.+|......|..+.
T Consensus 278 ~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 99988 2211 11223 3466677876654445555444
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.2e-17 Score=194.84 Aligned_cols=321 Identities=13% Similarity=0.069 Sum_probs=183.8
Q ss_pred CceEEEEEEcCCcccc-cccc---CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcc-----ccccccC
Q 003399 471 NAKRLNAVERWDDFAC-LDDY---DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQ-----YPSGIEN 541 (823)
Q Consensus 471 ~~r~l~sl~~~~~~~~-~~~~---~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~-----lp~~i~~ 541 (823)
..++| .+..+..... .... +++|++|.+.++.... ...+..++.++++|++|+|++|.+.. ++.....
T Consensus 106 ~L~~L-~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 106 WLEEI-RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TCCEE-EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCeE-EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 46667 6665432211 1111 6888888887764311 12244566688888888888887542 3333346
Q ss_pred ccccceeeccCCC--Cc--ccchhhhhcCCCccEEeCCCC-cccccchhhcCCCCCceeeccCcccC-------------
Q 003399 542 LFLLRYLKLNIPS--LK--SLPSSLLSNLLNLYTLDMPFS-YIDHTADEFWKMNKLRHLNFGSITLP------------- 603 (823)
Q Consensus 542 L~~Lr~L~L~~~~--i~--~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~------------- 603 (823)
+++|++|++++|. +. .++.-+ .++++|++|++++| .+..+|..+.++++|++|+++.+...
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 6788888888876 22 222222 56788888888888 67777777888888888876654210
Q ss_pred -------------CCC---CC-CcCCCcccceeeccCCCc---ccccccCCCCccceEEeecccccchhhHHHhhcCCCC
Q 003399 604 -------------AHP---GK-YCGSLENLNFISALHPCC---CTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSC 663 (823)
Q Consensus 604 -------------~~~---~~-~i~~L~~L~~l~~~~~~~---~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~ 663 (823)
... .+ .+..+.+|+.+++..... .+...+..+++|+.|.+.++. ....++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHHHHhCCC
Confidence 000 01 011244555555542211 122224566777777776652 33334444445667
Q ss_pred CcEEEeec--------C-C-----------CCCCCcEEeeCCc-----------CcccCccEeEee--c---c-cCCCCC
Q 003399 664 LESLKLAN--------E-S-----------KMPRLSKIALAEY-----------LFPHSLTHLSFS--N---T-VLMDDP 706 (823)
Q Consensus 664 L~~L~l~~--------~-~-----------~~~~L~~L~l~~~-----------~~~~~L~~L~L~--~---~-~l~~~~ 706 (823)
|++|++.. + . .+++|+.|.+... ..+++|+.|+++ + | .++...
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 77776632 0 0 2456666644322 135677777777 2 2 222111
Q ss_pred c-----ccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeec-ccccccccEEEeecCCCCCC-C
Q 003399 707 M-----PTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMG-NAAMPKLECLIINPCAYLKK-M 779 (823)
Q Consensus 707 ~-----~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~-~~~lp~L~~L~i~~C~~l~~-l 779 (823)
. ..+..+++|+.|+|++ .+.+..+..-...+++|+.|+|++|.....-... ...+|+|+.|++++|+.... +
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 1 1145567777777764 3333222221223788888888887532211111 25689999999999996222 2
Q ss_pred chhccCCCCCcEEEecCCC
Q 003399 780 PEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 780 p~~l~~l~~L~~L~l~~c~ 798 (823)
+..+..+++|+.|++++|+
T Consensus 499 ~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHTGGGGGGSSEEEEESSC
T ss_pred HHHHHhCCCCCEEeeeCCC
Confidence 2345678999999999998
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=9e-16 Score=160.36 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=35.3
Q ss_pred cceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc-hhhcCCCCCceeecc
Q 003399 521 LLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFG 598 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~ 598 (823)
.|++|+++++.+..++. .+.++.+|++|++++|.+..+++..+.++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444443332 3444444444444444444444322244444444444444444443 234444444444444
Q ss_pred Cc
Q 003399 599 SI 600 (823)
Q Consensus 599 ~~ 600 (823)
+|
T Consensus 109 ~n 110 (276)
T 2z62_A 109 ET 110 (276)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1e-16 Score=167.03 Aligned_cols=200 Identities=17% Similarity=0.141 Sum_probs=141.6
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCc
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSI 600 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~ 600 (823)
.+..+++..+.+.... ....+.+|+.|+++++.+..++. + +.+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCTT-G-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCccccccc-ccccccceeeeeeCCCCcccccc-c-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence 4445566666655443 35678888888888888887764 5 78888888888888887765 6788888888888888
Q ss_pred ccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcE
Q 003399 601 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSK 680 (823)
Q Consensus 601 ~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 680 (823)
.+.... ...++.+++|+.|+++++. +..
T Consensus 96 ~l~~~~----------------------~~~~~~l~~L~~L~L~~n~------------------------------l~~ 123 (272)
T 3rfs_A 96 QLQSLP----------------------NGVFDKLTNLKELVLVENQ------------------------------LQS 123 (272)
T ss_dssp CCCCCC----------------------TTTTTTCTTCCEEECTTSC------------------------------CCC
T ss_pred ccCccC----------------------hhHhcCCcCCCEEECCCCc------------------------------CCc
Confidence 665311 1115566677777776652 111
Q ss_pred EeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee-cc
Q 003399 681 IALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GN 759 (823)
Q Consensus 681 L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~ 759 (823)
+.......+++|++|++++|.+....+..++.+++|+.|++++|.+.+ ..+..+..+++|+.|++++|. +..++. .+
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 201 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVF 201 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc-CCccCHHHH
Confidence 111112345677777788888766666668899999999999998875 333446789999999999985 555554 46
Q ss_pred cccccccEEEeecCCCCCC
Q 003399 760 AAMPKLECLIINPCAYLKK 778 (823)
Q Consensus 760 ~~lp~L~~L~i~~C~~l~~ 778 (823)
+.+++|+.|++.+|+....
T Consensus 202 ~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 202 DRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp TTCTTCCEEECCSSCBCCC
T ss_pred hCCcCCCEEEccCCCcccc
Confidence 8899999999999975543
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.1e-15 Score=159.56 Aligned_cols=207 Identities=20% Similarity=0.179 Sum_probs=145.6
Q ss_pred cCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCC
Q 003399 490 YDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 568 (823)
Q Consensus 490 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 568 (823)
..+++++|.+.++... ......|.++++|++|++++|.+..++. .+.++.+|++|++++|.+..+++..+.++++
T Consensus 26 l~~~l~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp SCTTCCEEECTTCCCC----EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCCccEEECCCCccc----ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 3678999999887763 3444578889999999999999887654 6889999999999999999888654489999
Q ss_pred ccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccc
Q 003399 569 LYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 569 L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
|++|++++|.+..++. .+..+++|++|++++|.+..... +..++.+++|+.|+++++.
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l---------------------~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL---------------------PEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC---------------------CGGGGGCTTCCEEECCSSC
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC---------------------chhhccCCCCCEEECCCCC
Confidence 9999999998888865 68899999999999987754221 1226677788888887774
Q ss_pred ccchhhHHHhhcCCCCCc----EEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeec
Q 003399 648 SYNQSLLSKSLCRLSCLE----SLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQ 723 (823)
Q Consensus 648 ~~~~~~l~~~l~~l~~L~----~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 723 (823)
.....+..+..+++|+ +|++++| .+..+.... ....+|+.|++++|.+.......+..+++|+.|+|++
T Consensus 161 --l~~~~~~~~~~l~~L~~l~l~L~ls~n----~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 161 --IQSIYCTDLRVLHQMPLLNLSLDLSLN----PMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp --CCEECGGGGHHHHTCTTCCEEEECCSS----CCCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred --CCcCCHHHhhhhhhccccceeeecCCC----cccccCccc-cCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 1111122333333333 6666654 344333222 1233677788887777655555567777788887777
Q ss_pred CccCC
Q 003399 724 NSYSG 728 (823)
Q Consensus 724 ~~~~~ 728 (823)
|.+..
T Consensus 234 N~~~c 238 (276)
T 2z62_A 234 NPWDC 238 (276)
T ss_dssp SCBCC
T ss_pred Ccccc
Confidence 76543
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1e-15 Score=160.80 Aligned_cols=201 Identities=19% Similarity=0.169 Sum_probs=126.6
Q ss_pred cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcccCCCCCCCcCCCccc
Q 003399 538 GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENL 616 (823)
Q Consensus 538 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L 616 (823)
.++++.+|++++++++.+..+|..+ . .+|++|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------ 69 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------ 69 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------
T ss_pred cccccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------
Confidence 4678889999999999999999876 3 7899999999999888 4679999999999999987643
Q ss_pred ceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeE
Q 003399 617 NFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLS 696 (823)
Q Consensus 617 ~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~ 696 (823)
+.. .+.+++|+.|+++++. ...+|..+..+++|+.|++++| .+..+....+..+++|+.|+
T Consensus 70 -----------~~~-~~~l~~L~~L~Ls~N~---l~~l~~~~~~l~~L~~L~l~~N----~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 70 -----------LQV-DGTLPVLGTLDLSHNQ---LQSLPLLGQTLPALTVLDVSFN----RLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp -----------EEC-CSCCTTCCEEECCSSC---CSSCCCCTTTCTTCCEEECCSS----CCCCCCSSTTTTCTTCCEEE
T ss_pred -----------ccC-CCCCCcCCEEECCCCc---CCcCchhhccCCCCCEEECCCC----cCcccCHHHHcCCCCCCEEE
Confidence 112 3567888888888773 3345555556666666666544 23333322234455555555
Q ss_pred eecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEeecCC
Q 003399 697 FSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLIINPCA 774 (823)
Q Consensus 697 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~ 774 (823)
|++|.+....+..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|+++ .+..+|.....+++|+.|.+.+++
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 55555544444444555555555555554443 11122344555555555554 244455444455555555555444
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.3e-15 Score=156.62 Aligned_cols=125 Identities=26% Similarity=0.280 Sum_probs=92.0
Q ss_pred CccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccE
Q 003399 493 QLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYT 571 (823)
Q Consensus 493 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 571 (823)
..+++.+.+.....+ +.. -.+.|+.|+|+++.+..+|. .+.++.+|++|++++|.+..+|..++.++++|++
T Consensus 17 ~~~~l~~~~~~l~~i----p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI----PSN---IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCSSC----CSC---CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCCcc----CCC---CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 456666665554321 111 12578999999999887764 6888999999999999999998887688999999
Q ss_pred EeCCCCcccccchh-hcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecc
Q 003399 572 LDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGD 646 (823)
Q Consensus 572 L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~ 646 (823)
|++++|.+..+|.. +..+++|++|++++|.+..... ..++.+++|+.|+++++
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP----------------------RVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT----------------------TTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH----------------------HHhCcCcCCCEEECCCC
Confidence 99999988888754 6889999999998887654211 11556677777777666
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1e-15 Score=162.47 Aligned_cols=209 Identities=20% Similarity=0.228 Sum_probs=163.1
Q ss_pred EccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCC
Q 003399 526 DLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAH 605 (823)
Q Consensus 526 ~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~ 605 (823)
.+..+.+.... ....+.+|++|+++++.+..+| .+ ..+++|++|++++|.+..+|. +..+++|++|++++|.+..
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-
Confidence 44555555432 2567899999999999999998 56 999999999999999999987 9999999999999987653
Q ss_pred CCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCC
Q 003399 606 PGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAE 685 (823)
Q Consensus 606 ~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~ 685 (823)
++. +..+++|+.|+++++. ...++ .+..+++|++|++++| .+..+. .
T Consensus 100 ----------------------~~~-~~~l~~L~~L~l~~n~---l~~~~-~l~~l~~L~~L~l~~n----~l~~~~--~ 146 (308)
T 1h6u_A 100 ----------------------VSA-IAGLQSIKTLDLTSTQ---ITDVT-PLAGLSNLQVLYLDLN----QITNIS--P 146 (308)
T ss_dssp ----------------------CGG-GTTCTTCCEEECTTSC---CCCCG-GGTTCTTCCEEECCSS----CCCCCG--G
T ss_pred ----------------------chh-hcCCCCCCEEECCCCC---CCCch-hhcCCCCCCEEECCCC----ccCcCc--c
Confidence 123 7788999999999884 33344 3888999999999876 233221 1
Q ss_pred cCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccc
Q 003399 686 YLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKL 765 (823)
Q Consensus 686 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L 765 (823)
...+++|+.|++++|.+.. .+.+..+++|+.|++++|.+.+. +. +..+++|+.|++++|. +..++ .+..+++|
T Consensus 147 l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N~-l~~~~-~l~~l~~L 219 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDI--SP-LASLPNLIEVHLKNNQ-ISDVS-PLANTSNL 219 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECTTSC-CCBCG-GGTTCTTC
T ss_pred ccCCCCccEEEccCCcCCC--ChhhcCCCCCCEEECCCCccCcC--hh-hcCCCCCCEEEccCCc-cCccc-cccCCCCC
Confidence 3568899999999998754 33388999999999998887752 22 6779999999999984 66665 37889999
Q ss_pred cEEEeecCCCCCCCc
Q 003399 766 ECLIINPCAYLKKMP 780 (823)
Q Consensus 766 ~~L~i~~C~~l~~lp 780 (823)
+.|++++|+ +...|
T Consensus 220 ~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 220 FIVTLTNQT-ITNQP 233 (308)
T ss_dssp CEEEEEEEE-EECCC
T ss_pred CEEEccCCe-eecCC
Confidence 999999987 34444
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=1.3e-17 Score=183.44 Aligned_cols=244 Identities=17% Similarity=0.124 Sum_probs=171.9
Q ss_pred HHHhcCCCcceEEEccCCCCcc-----ccccccCccccceeeccCCCCcc----cchhh------hhcCCCccEEeCCCC
Q 003399 513 EKIYGMFKLLRVLDLGSLVLIQ-----YPSGIENLFLLRYLKLNIPSLKS----LPSSL------LSNLLNLYTLDMPFS 577 (823)
Q Consensus 513 ~~~~~~~~~LrvL~L~~~~l~~-----lp~~i~~L~~Lr~L~L~~~~i~~----lp~~i------~~~L~~L~~L~L~~~ 577 (823)
...+..+++|++|+|++|.+.. ++..+.++++|++|+|++|.+.. +|..+ +.++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 3567888999999999998772 45557789999999999976553 34443 268899999999999
Q ss_pred cccc-----cchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCC---------CccceEEe
Q 003399 578 YIDH-----TADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRL---------PNLRNLRI 643 (823)
Q Consensus 578 ~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l---------~~L~~L~i 643 (823)
.+.. +|..+.++++|++|++++|.+.... ...+...+..+ ++|+.|++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~------------------~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA------------------GAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH------------------HHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH------------------HHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 8876 7888999999999999998764210 00111113333 89999999
Q ss_pred ecccc--cchhhHHHhhcCCCCCcEEEeecCCCCCCCcE-----EeeCCcCcccCccEeEeecccCC----CCCcccccC
Q 003399 644 QGDLS--YNQSLLSKSLCRLSCLESLKLANESKMPRLSK-----IALAEYLFPHSLTHLSFSNTVLM----DDPMPTLEK 712 (823)
Q Consensus 644 ~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~-----L~l~~~~~~~~L~~L~L~~~~l~----~~~~~~l~~ 712 (823)
++|.- .....+...+..+++|++|++++| .+.. +.-.....+++|+.|+|++|.++ ...+..+..
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n----~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQN----GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSS----CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCC----CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 98852 123334467778889999999875 2221 11113356788999999998874 344566788
Q ss_pred CCCCCeEEeecCccCCcc---ccccC--CCCCcccEEeeecCCCCcc-----eeecc-cccccccEEEeecCCCCCCC
Q 003399 713 LPLLQVLKLKQNSYSGRK---LTCGS--YGFPNLKVLHLKSMLWLEE-----WTMGN-AAMPKLECLIINPCAYLKKM 779 (823)
Q Consensus 713 l~~L~~L~L~~~~~~~~~---~~~~~--~~~~~L~~L~L~~~~~l~~-----~~~~~-~~lp~L~~L~i~~C~~l~~l 779 (823)
+++|+.|+|++|.+.+.. ++..+ ..+++|+.|+|++|. +.. ++... ..+|+|+.|++++|+.-...
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 899999999988776521 22333 348889999999875 443 55555 56799999999998755444
No 89
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.64 E-value=2.4e-16 Score=138.62 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHhhcccccccchhchhhHHHHHHHHHHHHHHHHhchhhhhhhhhhhccCccCCChhHHHHHHHHHHHhh
Q 003399 3 INFRLFFERLGRVLAGEEVTLPDAAKQPIQNLHAESEIVTSWLREFEDDISCLLMQKIGEVEIDDPDLGNIMDEINFFTY 82 (823)
Q Consensus 3 ~~v~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~ 82 (823)
|+|+++++||++++. +|+.+..++++++++|+++|++|+++|.||+. +. .+..++.++.|+++||++||
T Consensus 1 a~v~~ll~KL~~ll~-~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~------~~----~~~~d~~vk~W~~~vrdlaY 69 (115)
T 3qfl_A 1 AAISNLIPKLGELLT-EEFKLHKGVKKNIEDLGKELESMNAALIKIGE------VP----REQLDSQDKLWADEVRELSY 69 (115)
T ss_dssp CTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SC----GGGCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH------hc----cccCCHHHHHHHHHHHHHHH
Confidence 688999999999999 99999999999999999999999999999998 62 01689999999999999999
Q ss_pred hhHHHHhHhHhhhhc
Q 003399 83 ESEKVIDTFINSISE 97 (823)
Q Consensus 83 d~ed~ld~~~~~~~~ 97 (823)
|+||++|+|.++...
T Consensus 70 D~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 70 VIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998865
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.62 E-value=4e-17 Score=190.51 Aligned_cols=302 Identities=16% Similarity=0.098 Sum_probs=166.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCC-CccccccccCccccceeeccCC-------CCcccchhh
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIP-------SLKSLPSSL 562 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~-l~~lp~~i~~L~~Lr~L~L~~~-------~i~~lp~~i 562 (823)
+++|++|.+..+. ..++...+..++.++++|++|++++|. +..+|..+..+++|++|++..+ .+..++..+
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 5566666665554 111223334444556666667666663 4455555666666666664433 122344443
Q ss_pred hhcCCCccEE-eCCCCcccccchhhcCCCCCceeeccCcccCCCCCC-CcCCCcccceeeccCCC--cccccccCCCCcc
Q 003399 563 LSNLLNLYTL-DMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGK-YCGSLENLNFISALHPC--CCTEDILGRLPNL 638 (823)
Q Consensus 563 ~~~L~~L~~L-~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~-~i~~L~~L~~l~~~~~~--~~~~~~l~~l~~L 638 (823)
+++++|+.| .+.+.....+|..+..+++|++|++++|.+...... .+.++++|+.+.+.... ..+......+++|
T Consensus 262 -~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 262 -SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340 (594)
T ss_dssp -HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred -hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCC
Confidence 455555555 333333334444444566666666666653321111 13344555555544211 1122212346666
Q ss_pred ceEEeecc--------cccchhhHHHhhcCCCCCcEEEeecCC-----------CCCCCcEEeeC--C---c--------
Q 003399 639 RNLRIQGD--------LSYNQSLLSKSLCRLSCLESLKLANES-----------KMPRLSKIALA--E---Y-------- 686 (823)
Q Consensus 639 ~~L~i~~~--------~~~~~~~l~~~l~~l~~L~~L~l~~~~-----------~~~~L~~L~l~--~---~-------- 686 (823)
+.|++..+ .......+......+++|++|.+..+. .+++|+.|.+. + +
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 66666331 111222222222335566666554422 24566666665 1 1
Q ss_pred --------CcccCccEeEeecccCCCCCcccccC-CCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce--
Q 003399 687 --------LFPHSLTHLSFSNTVLMDDPMPTLEK-LPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW-- 755 (823)
Q Consensus 687 --------~~~~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~-- 755 (823)
..+++|+.|+|++ .++...+..++. +++|+.|+|++|.+++..+.....++++|+.|+|++|+. ...
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~ 498 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKAL 498 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHH
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHH
Confidence 3467899999977 555555566665 899999999988876544433335699999999999975 322
Q ss_pred eecccccccccEEEeecCCCCCCCchhc-cCCCCCcEEEecC
Q 003399 756 TMGNAAMPKLECLIINPCAYLKKMPEQL-WCIKSLNKFDCWW 796 (823)
Q Consensus 756 ~~~~~~lp~L~~L~i~~C~~l~~lp~~l-~~l~~L~~L~l~~ 796 (823)
......+|+|+.|++++|+........+ ..+|+|+...+..
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 2234568999999999998622211222 4567776655543
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.61 E-value=9e-17 Score=176.76 Aligned_cols=257 Identities=14% Similarity=0.069 Sum_probs=161.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCc----cccccc-------cCccccceeeccCCCCcc--
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI----QYPSGI-------ENLFLLRYLKLNIPSLKS-- 557 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~----~lp~~i-------~~L~~Lr~L~L~~~~i~~-- 557 (823)
+++|++|.+.++.........+...+.++++|++|+|++|.+. .+|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 6788888888775421001112344678888888888887544 334444 678888888888888775
Q ss_pred ---cchhhhhcCCCccEEeCCCCcccc-----cchhhcCC---------CCCceeeccCcccCCCCCCCcCCCcccceee
Q 003399 558 ---LPSSLLSNLLNLYTLDMPFSYIDH-----TADEFWKM---------NKLRHLNFGSITLPAHPGKYCGSLENLNFIS 620 (823)
Q Consensus 558 ---lp~~i~~~L~~L~~L~L~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~ 620 (823)
+|..+ .++++|++|+|++|.+.. ++..+..+ ++|++|++++|.+... .
T Consensus 111 ~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---------~----- 175 (386)
T 2ca6_A 111 QEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---------S----- 175 (386)
T ss_dssp HHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------G-----
T ss_pred HHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------H-----
Confidence 66666 888888888888887753 33344445 8888888888765420 0
Q ss_pred ccCCCcccccccCCCCccceEEeeccccc--chhhHHH-hhcCCCCCcEEEeecCCCCCCCc-----EEeeCCcCcccCc
Q 003399 621 ALHPCCCTEDILGRLPNLRNLRIQGDLSY--NQSLLSK-SLCRLSCLESLKLANESKMPRLS-----KIALAEYLFPHSL 692 (823)
Q Consensus 621 ~~~~~~~~~~~l~~l~~L~~L~i~~~~~~--~~~~l~~-~l~~l~~L~~L~l~~~~~~~~L~-----~L~l~~~~~~~~L 692 (823)
...+...+..+++|+.|++++|.-. ....+.. .+..+++|+.|+|++|. +. .+ ......+++|
T Consensus 176 ----~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~----l~~~g~~~l-~~~l~~~~~L 246 (386)
T 2ca6_A 176 ----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT----FTHLGSSAL-AIALKSWPNL 246 (386)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC----CHHHHHHHH-HHHGGGCTTC
T ss_pred ----HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC----CCcHHHHHH-HHHHccCCCc
Confidence 1111123667788888888887521 1112333 77788888888887652 21 11 0112456788
Q ss_pred cEeEeecccCCCC----Ccccc--cCCCCCCeEEeecCccCCc---cccccC-CCCCcccEEeeecCCCCccee---ecc
Q 003399 693 THLSFSNTVLMDD----PMPTL--EKLPLLQVLKLKQNSYSGR---KLTCGS-YGFPNLKVLHLKSMLWLEEWT---MGN 759 (823)
Q Consensus 693 ~~L~L~~~~l~~~----~~~~l--~~l~~L~~L~L~~~~~~~~---~~~~~~-~~~~~L~~L~L~~~~~l~~~~---~~~ 759 (823)
++|+|++|.+... .+..+ +.+++|+.|+|++|.+... .++..+ ..+++|+.|++++|+.-...+ ...
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 326 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHH
Confidence 8888888887543 23444 3488888888888876652 233333 457888888888875332221 112
Q ss_pred cccccccEEEee
Q 003399 760 AAMPKLECLIIN 771 (823)
Q Consensus 760 ~~lp~L~~L~i~ 771 (823)
..+|+++.+.+.
T Consensus 327 ~~l~~~~~~~l~ 338 (386)
T 2ca6_A 327 EVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHTCCEEC
T ss_pred HHhhhcCcchhh
Confidence 346666655543
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.1e-15 Score=153.86 Aligned_cols=208 Identities=18% Similarity=0.263 Sum_probs=119.3
Q ss_pred CccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCc-ccccch-hhcCCCCCceeeccC-cccCCCCCC
Q 003399 532 LIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSY-IDHTAD-EFWKMNKLRHLNFGS-ITLPAHPGK 608 (823)
Q Consensus 532 l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~l~~-~~~~~~~~~ 608 (823)
++.+|. +.. +|++|++++|.+..+|+..++++++|++|++++|. +..+|. .+..+++|++|++++ |.+....
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-- 97 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-- 97 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC--
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC--
Confidence 555665 332 67777777777776666433667777777777774 666654 466677777777665 4443200
Q ss_pred CcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCc
Q 003399 609 YCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLF 688 (823)
Q Consensus 609 ~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~ 688 (823)
...+..+++|+.|+++++. ...+|. +..+++|+
T Consensus 98 --------------------~~~f~~l~~L~~L~l~~n~---l~~lp~-~~~l~~L~----------------------- 130 (239)
T 2xwt_C 98 --------------------PDALKELPLLKFLGIFNTG---LKMFPD-LTKVYSTD----------------------- 130 (239)
T ss_dssp --------------------TTSEECCTTCCEEEEEEEC---CCSCCC-CTTCCBCC-----------------------
T ss_pred --------------------HHHhCCCCCCCEEeCCCCC---Cccccc-cccccccc-----------------------
Confidence 0114455666666666552 111221 22222222
Q ss_pred ccCccEeEeecc-cCCCCCcccccCCCCCC-eEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee-ccccc-cc
Q 003399 689 PHSLTHLSFSNT-VLMDDPMPTLEKLPLLQ-VLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAM-PK 764 (823)
Q Consensus 689 ~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~l-p~ 764 (823)
.|+.|++++| .+.......+..+++|+ .|++++|.+.. ++......++|+.|++++|+.++.++. .+..+ ++
T Consensus 131 --~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 131 --IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp --SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred --cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 1225555555 54443344566677777 77777666542 232222236788888877755666643 35566 78
Q ss_pred ccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 765 LECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 765 L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
|+.|++++++ ++.+|.. .+++|+.|++.++.
T Consensus 207 L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 207 PSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 8888888765 5666654 67778888877764
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.7e-15 Score=154.50 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=70.6
Q ss_pred CcceEEEccCCCCccccc-cccCccccceeeccCCC-CcccchhhhhcCCCccEEeCCC-Ccccccch-hhcCCCCCcee
Q 003399 520 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPS-LKSLPSSLLSNLLNLYTLDMPF-SYIDHTAD-EFWKMNKLRHL 595 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~-~i~~L~~L~~L 595 (823)
+.|++|+++++.++.+|. .+..+++|++|++++|. +..+|+..++++++|++|++++ +.+..+|. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999999887766 68889999999999996 8888875458899999999998 78888864 57889999999
Q ss_pred eccCcccCC
Q 003399 596 NFGSITLPA 604 (823)
Q Consensus 596 ~l~~~~~~~ 604 (823)
++++|.+..
T Consensus 111 ~l~~n~l~~ 119 (239)
T 2xwt_C 111 GIFNTGLKM 119 (239)
T ss_dssp EEEEECCCS
T ss_pred eCCCCCCcc
Confidence 998887654
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=4.5e-15 Score=160.66 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=47.7
Q ss_pred CccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccccccccEEEe
Q 003399 691 SLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAAMPKLECLII 770 (823)
Q Consensus 691 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~lp~L~~L~i 770 (823)
.++.|++++|.+.. +++.....++|+.|.+.+++.........+..+++|+.|+++++ .++.+|. +.+.+|+.|.+
T Consensus 155 ~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~ 230 (350)
T 4ay9_X 155 ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRA 230 (350)
T ss_dssp SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEEC
T ss_pred hhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhh
Confidence 34455555555432 22222334455555554333322221223345555555555554 3444443 33555555555
Q ss_pred ecCCCCCCCchhccCCCCCcEEEec
Q 003399 771 NPCAYLKKMPEQLWCIKSLNKFDCW 795 (823)
Q Consensus 771 ~~C~~l~~lp~~l~~l~~L~~L~l~ 795 (823)
.+|..++.+|. +..+++|+.+++.
T Consensus 231 l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 231 RSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp TTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred ccCCCcCcCCC-chhCcChhhCcCC
Confidence 55555555553 4555555555554
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=2.5e-15 Score=163.56 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=60.7
Q ss_pred hHHHhcCCCcceEEEccCCCCcccc-----ccccCcc-ccceeeccCCCCcccchhhhhcC-----CCccEEeCCCCccc
Q 003399 512 WEKIYGMFKLLRVLDLGSLVLIQYP-----SGIENLF-LLRYLKLNIPSLKSLPSSLLSNL-----LNLYTLDMPFSYID 580 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~~l~~lp-----~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L-----~~L~~L~L~~~~l~ 580 (823)
.+.++...++|+.|+|++|.+...+ ..+.++. +|++|+|++|.+.......+..+ ++|++|+|++|.+.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 4455666666788888877776544 5566676 77888888777775533322554 77888888877776
Q ss_pred ccc-hh----hcCC-CCCceeeccCcccCC
Q 003399 581 HTA-DE----FWKM-NKLRHLNFGSITLPA 604 (823)
Q Consensus 581 ~lp-~~----i~~L-~~L~~L~l~~~~~~~ 604 (823)
..+ .. +..+ ++|++|++++|.+..
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 553 32 3344 677888777776643
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.8e-14 Score=151.39 Aligned_cols=170 Identities=22% Similarity=0.245 Sum_probs=96.7
Q ss_pred cCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceee
Q 003399 517 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLN 596 (823)
Q Consensus 517 ~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 596 (823)
..++.|+.|++++|.+..++. +..+.+|++|++++|.+..+++ + +++++|++|++++|.+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 356667777777777766653 6677777777777777777766 4 777777777777777766654 67777777777
Q ss_pred ccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCC
Q 003399 597 FGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMP 676 (823)
Q Consensus 597 l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 676 (823)
+++|.+.. +.. +..+++|+.|+++++. ...+ ..+..+++|+.|++++|
T Consensus 119 L~~n~i~~-----------------------~~~-l~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~L~~N---- 166 (291)
T 1h6t_A 119 LEHNGISD-----------------------ING-LVHLPQLESLYLGNNK---ITDI-TVLSRLTKLDTLSLEDN---- 166 (291)
T ss_dssp CTTSCCCC-----------------------CGG-GGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSS----
T ss_pred CCCCcCCC-----------------------Chh-hcCCCCCCEEEccCCc---CCcc-hhhccCCCCCEEEccCC----
Confidence 77765543 112 4555666666666553 1111 23444555555555443
Q ss_pred CCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCcc
Q 003399 677 RLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSY 726 (823)
Q Consensus 677 ~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 726 (823)
.+..+.. ...+++|+.|++++|.+.. .+.+..+++|+.|++++|.+
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEE
T ss_pred ccccchh--hcCCCccCEEECCCCcCCC--ChhhccCCCCCEEECcCCcc
Confidence 1111110 2334455555555555432 23355555555555555443
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=4.3e-14 Score=145.24 Aligned_cols=176 Identities=23% Similarity=0.313 Sum_probs=106.2
Q ss_pred CcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeecc
Q 003399 520 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFG 598 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~ 598 (823)
...+.++++++.+..+|..+. .+|++|+|++|.+..+++..++++++|++|+|++|.+..++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456788888888888887765 588888888888887777544888888888888888887754 47888888888888
Q ss_pred CcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHH-hhcCCCCCcEEEeecCCCCCC
Q 003399 599 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSK-SLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 599 ~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~ 677 (823)
+|.+..... ..++.+++|+.|+++++. ...++. .+..+++|+.|++++| .
T Consensus 92 ~n~l~~~~~----------------------~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N----~ 142 (251)
T 3m19_A 92 NNQLASLPL----------------------GVFDHLTQLDKLYLGGNQ---LKSLPSGVFDRLTKLKELRLNTN----Q 142 (251)
T ss_dssp TSCCCCCCT----------------------TTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSS----C
T ss_pred CCcccccCh----------------------hHhcccCCCCEEEcCCCc---CCCcChhHhccCCcccEEECcCC----c
Confidence 887653211 114566667777766653 112221 2344445555554433 2
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCcc
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSY 726 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 726 (823)
+..+.......+++|+.|+|++|.+....+..+..+++|+.|+|++|.+
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 2222211223344455555555554433333444555555555554444
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=1.9e-15 Score=164.41 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=65.2
Q ss_pred EEEccCCCCc-cccccccCccccceeeccCCCCcccch----hhhhcCC-CccEEeCCCCccccc-chhhcCC-----CC
Q 003399 524 VLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLKSLPS----SLLSNLL-NLYTLDMPFSYIDHT-ADEFWKM-----NK 591 (823)
Q Consensus 524 vL~L~~~~l~-~lp~~i~~L~~Lr~L~L~~~~i~~lp~----~i~~~L~-~L~~L~L~~~~l~~l-p~~i~~L-----~~ 591 (823)
+++++++.+. .+|..+....+|++|+|++|.+...+. ..+.+++ +|++|+|++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888887 455555566679999999999998875 4347888 999999999988876 5556665 99
Q ss_pred CceeeccCcccCC
Q 003399 592 LRHLNFGSITLPA 604 (823)
Q Consensus 592 L~~L~l~~~~~~~ 604 (823)
|++|++++|.+..
T Consensus 82 L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 82 VTSLNLSGNFLSY 94 (362)
T ss_dssp CCEEECCSSCGGG
T ss_pred ccEEECcCCcCCh
Confidence 9999999998765
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=153.97 Aligned_cols=204 Identities=16% Similarity=0.122 Sum_probs=124.1
Q ss_pred CCCcceEEEccCCCCc-cccccc--cCccccceeeccCCCCcccc-----hhhhhcCCCccEEeCCCCcccccc-hhhcC
Q 003399 518 MFKLLRVLDLGSLVLI-QYPSGI--ENLFLLRYLKLNIPSLKSLP-----SSLLSNLLNLYTLDMPFSYIDHTA-DEFWK 588 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~-~lp~~i--~~L~~Lr~L~L~~~~i~~lp-----~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~ 588 (823)
.++.|+.|++++|.+. ..|..+ ..+.+|++|+|++|.+.... ..+ ..+++|++|++++|.+..+| ..+..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCCCcchhhHHHhcc
Confidence 3466999999999977 667777 88999999999999887522 233 57889999999999888775 56888
Q ss_pred CCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHh-hcCCCCCcEE
Q 003399 589 MNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKS-LCRLSCLESL 667 (823)
Q Consensus 589 L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~-l~~l~~L~~L 667 (823)
+++|++|++++|.+.... . ......++.+++|+.|++++|.-......+.. +..+++|++|
T Consensus 168 l~~L~~L~Ls~N~l~~~~-----------~-------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGER-----------G-------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp CTTCCEEECCSCTTCHHH-----------H-------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSE
T ss_pred CCCCCEEECCCCCCccch-----------h-------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEE
Confidence 999999999988753200 0 00011145778888888888742111222222 3455566666
Q ss_pred EeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCC---CCCCeEEeecCccCCccccccCCCCCcccEE
Q 003399 668 KLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKL---PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVL 744 (823)
Q Consensus 668 ~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l---~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 744 (823)
++++ |.+....++.+..+ ++|+.|+|++|.+.. ++... +++|+.|
T Consensus 230 ~Ls~----------------------------N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L 277 (310)
T 4glp_A 230 DLSH----------------------------NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVL 277 (310)
T ss_dssp ECTT----------------------------SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCE
T ss_pred ECCC----------------------------CCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEE
Confidence 5554 44333333333333 455555555554442 22222 2556666
Q ss_pred eeecCCCCcceeecccccccccEEEeecCC
Q 003399 745 HLKSMLWLEEWTMGNAAMPKLECLIINPCA 774 (823)
Q Consensus 745 ~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~ 774 (823)
+|++| .+..+|. ...+|+|+.|++++++
T Consensus 278 ~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSSN-RLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSC-CCCSCCC-TTSCCCCSCEECSSTT
T ss_pred ECCCC-cCCCCch-hhhCCCccEEECcCCC
Confidence 66555 2444433 3455666666666554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=2.2e-14 Score=165.46 Aligned_cols=82 Identities=21% Similarity=0.172 Sum_probs=44.2
Q ss_pred CCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeec
Q 003399 518 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNF 597 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 597 (823)
.++.|+.|++++|.+..+| .+..|.+|++|+|++|.+..+|+ + +.+++|+.|+|++|.+..+| .+..+++|++|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 4455555555555555544 35555555555555555555554 3 55555555555555555544 3555555555555
Q ss_pred cCcccC
Q 003399 598 GSITLP 603 (823)
Q Consensus 598 ~~~~~~ 603 (823)
++|.+.
T Consensus 117 s~N~l~ 122 (605)
T 1m9s_A 117 EHNGIS 122 (605)
T ss_dssp TTSCCC
T ss_pred cCCCCC
Confidence 555443
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=1.7e-14 Score=166.46 Aligned_cols=189 Identities=20% Similarity=0.179 Sum_probs=115.7
Q ss_pred CcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccC
Q 003399 520 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 599 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 599 (823)
..+..+.+..+.+..++. +..|.+|++|++++|.+..+| .+ +.|++|+.|+|++|.+..+|. +..+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 345556777777665543 678999999999999999998 46 999999999999999999987 99999999999999
Q ss_pred cccCCCCCCCcCCCcccceeeccC-CCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCC
Q 003399 600 ITLPAHPGKYCGSLENLNFISALH-PCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRL 678 (823)
Q Consensus 600 ~~~~~~~~~~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L 678 (823)
|.+.. ++.++++++|+.|++.. ....++. +..|++|+.|++++|. ...+ ..+..+++|+.|+|+.| .+
T Consensus 97 N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~---l~~l-~~l~~l~~L~~L~Ls~N----~l 165 (605)
T 1m9s_A 97 NKIKD--LSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNK---ITDI-TVLSRLTKLDTLSLEDN----QI 165 (605)
T ss_dssp SCCCC--CTTSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSC---CCCC-GGGGSCTTCSEEECCSS----CC
T ss_pred CCCCC--ChhhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCc---cCCc-hhhcccCCCCEEECcCC----cC
Confidence 98765 33455555555555552 2222333 5555555555555542 1111 23444555555555443 11
Q ss_pred cEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccC
Q 003399 679 SKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYS 727 (823)
Q Consensus 679 ~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 727 (823)
..+.. ...+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEEE
T ss_pred CCchh--hccCCCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcCc
Confidence 11111 2334455555555554432 234445555555555544433
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=155.08 Aligned_cols=104 Identities=18% Similarity=0.119 Sum_probs=79.1
Q ss_pred cccCccEeEeecccCCCCCcc----cccCCCCCCeEEeecCccCCccccccCCCC---CcccEEeeecCCCCcceeeccc
Q 003399 688 FPHSLTHLSFSNTVLMDDPMP----TLEKLPLLQVLKLKQNSYSGRKLTCGSYGF---PNLKVLHLKSMLWLEEWTMGNA 760 (823)
Q Consensus 688 ~~~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~l~~~~~~~~ 760 (823)
.+++|++|+|++|.++. ... .++.+++|++|+|++|.+.+. .|.....+ ++|+.|++++|. ++.+|...
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~- 270 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL- 270 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC-
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhccCcCcCCEEECCCCC-CCchhhhh-
Confidence 35677777777887632 122 246889999999999988763 24334444 799999999984 66777654
Q ss_pred ccccccEEEeecCCCCCCCchhccCCCCCcEEEecCCC
Q 003399 761 AMPKLECLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 761 ~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~l~~c~ 798 (823)
+++|+.|++++|. ++.+|. +..+++|+.|++++++
T Consensus 271 -~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 271 -PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred -cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 4899999999997 666765 6889999999999886
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=1.2e-13 Score=145.26 Aligned_cols=186 Identities=24% Similarity=0.216 Sum_probs=135.7
Q ss_pred ceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcc
Q 003399 522 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSIT 601 (823)
Q Consensus 522 LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 601 (823)
+..+.+....+..++ .+..+.+|++|++++|.+..+|. + +.+++|++|++++|.+..++. +.++++|++|++++|.
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccChh-H-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 344456666665443 25678999999999999999975 5 899999999999999999987 9999999999999987
Q ss_pred cCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEE
Q 003399 602 LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKI 681 (823)
Q Consensus 602 ~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L 681 (823)
+.. ++. ++.+++|+.|+++++. ...+ ..+..+++|+.|++++| .+..+
T Consensus 102 l~~-----------------------~~~-l~~l~~L~~L~L~~n~---i~~~-~~l~~l~~L~~L~l~~n----~l~~~ 149 (291)
T 1h6t_A 102 VKD-----------------------LSS-LKDLKKLKSLSLEHNG---ISDI-NGLVHLPQLESLYLGNN----KITDI 149 (291)
T ss_dssp CCC-----------------------GGG-GTTCTTCCEEECTTSC---CCCC-GGGGGCTTCCEEECCSS----CCCCC
T ss_pred CCC-----------------------Chh-hccCCCCCEEECCCCc---CCCC-hhhcCCCCCCEEEccCC----cCCcc
Confidence 643 223 7788899999998874 2223 35677788888888765 23332
Q ss_pred eeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCC
Q 003399 682 ALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSML 750 (823)
Q Consensus 682 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 750 (823)
.....+++|+.|++++|.+.... .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++++
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEE
T ss_pred --hhhccCCCCCEEEccCCccccch--hhcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCc
Confidence 23355777888888888764432 27777888888887776654 22 35667777777777764
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=7.3e-14 Score=159.37 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=63.0
Q ss_pred CcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccC
Q 003399 520 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 599 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 599 (823)
.+|++|+|+++.+..+|..+. .+|++|+|++|.|..+| . .+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP-E---LPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 388999999998888888764 78999999999999888 3 47889999999998888887 655 899999888
Q ss_pred cccCC
Q 003399 600 ITLPA 604 (823)
Q Consensus 600 ~~~~~ 604 (823)
|.+..
T Consensus 130 N~l~~ 134 (571)
T 3cvr_A 130 NQLTM 134 (571)
T ss_dssp SCCSC
T ss_pred CcCCC
Confidence 87654
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=3.2e-13 Score=134.41 Aligned_cols=180 Identities=21% Similarity=0.264 Sum_probs=110.5
Q ss_pred eEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccCcc
Q 003399 523 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSIT 601 (823)
Q Consensus 523 rvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 601 (823)
+.++++++.+..+|..+ ..+|++|+++++.+..+|+..++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45667777777777555 34788888888888877776557788888888888877777654 5778888888887776
Q ss_pred cCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEE
Q 003399 602 LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKI 681 (823)
Q Consensus 602 ~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L 681 (823)
+.... ...++.+++|+.|+++++. ...++.
T Consensus 88 l~~~~----------------------~~~~~~l~~L~~L~L~~N~---l~~~~~------------------------- 117 (208)
T 2o6s_A 88 LQSLP----------------------NGVFDKLTQLKELALNTNQ---LQSLPD------------------------- 117 (208)
T ss_dssp CCCCC----------------------TTTTTTCTTCCEEECCSSC---CCCCCT-------------------------
T ss_pred CCccC----------------------HhHhcCccCCCEEEcCCCc---CcccCH-------------------------
Confidence 54311 0114455566666655542 111110
Q ss_pred eeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceeecccc
Q 003399 682 ALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTMGNAA 761 (823)
Q Consensus 682 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 761 (823)
.....+++|+.|++++|.+.......+..+++|+.|+|++|.+.+ .+++|+.|.++.+..-..+|..++.
T Consensus 118 --~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 118 --GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp --TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred --hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 011224455555666666554444456677777777777664432 4567777777666544566665555
Q ss_pred ccc
Q 003399 762 MPK 764 (823)
Q Consensus 762 lp~ 764 (823)
++.
T Consensus 188 l~~ 190 (208)
T 2o6s_A 188 VAP 190 (208)
T ss_dssp BCT
T ss_pred ccC
Confidence 554
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=8.6e-13 Score=135.48 Aligned_cols=168 Identities=19% Similarity=0.178 Sum_probs=106.2
Q ss_pred EEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCC
Q 003399 477 AVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSL 555 (823)
Q Consensus 477 sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i 555 (823)
.+.+......+....+.++.|.+.++... ...+..|.++++|++|+|++|.+..++ ..+..+.+|++|+|++|.+
T Consensus 20 ~~~~~~l~~~p~~~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 20 DCQGKSLDSVPSGIPADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp ECTTCCCSSCCSCCCTTCCEEECTTSCCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ecCCCCccccCCCCCCCCCEEEccCCCcC----ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 44444333333333567777777776653 233455677788888888888777554 3467778888888888888
Q ss_pred cccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCC
Q 003399 556 KSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGR 634 (823)
Q Consensus 556 ~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~ 634 (823)
..+|+..+..+++|++|+|++|.+..+|.. +..+++|++|++++|.+....... ++.
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------------------~~~ 153 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA----------------------FDK 153 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------------TTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH----------------------cCc
Confidence 777766557788888888888877777654 577888888888877665422212 455
Q ss_pred CCccceEEeecccccchhhHHHhhcCCCCCcEEEeecC
Q 003399 635 LPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANE 672 (823)
Q Consensus 635 l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 672 (823)
+++|+.|+++++. .....+..+..+++|+.|++++|
T Consensus 154 l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 154 LTNLQTLSLSTNQ--LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSC
T ss_pred CcCCCEEECCCCc--CCccCHHHHhCCCCCCEEEeeCC
Confidence 5666666666553 11112234555666666666654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=1.1e-13 Score=143.18 Aligned_cols=170 Identities=18% Similarity=0.195 Sum_probs=104.4
Q ss_pred CCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeec
Q 003399 518 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNF 597 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 597 (823)
.+..+..|+++++.+..++ .+..+.+|++|++++|.+..+| .+ +.+++|++|++++|.+..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3455666777777777666 5677777888888777777777 45 777778888887777777766 777777888877
Q ss_pred cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCC
Q 003399 598 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPR 677 (823)
Q Consensus 598 ~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~ 677 (823)
++|.+... + . +.. ++|+.|+++++. ...++ .+..+++|+.|++++| .
T Consensus 93 ~~N~l~~l--~---------------------~-~~~-~~L~~L~L~~N~---l~~~~-~l~~l~~L~~L~Ls~N----~ 139 (263)
T 1xeu_A 93 NRNRLKNL--N---------------------G-IPS-ACLSRLFLDNNE---LRDTD-SLIHLKNLEILSIRNN----K 139 (263)
T ss_dssp CSSCCSCC--T---------------------T-CCC-SSCCEEECCSSC---CSBSG-GGTTCTTCCEEECTTS----C
T ss_pred CCCccCCc--C---------------------c-ccc-CcccEEEccCCc---cCCCh-hhcCcccccEEECCCC----c
Confidence 77765431 1 1 222 556666666653 11222 3555555666655543 2
Q ss_pred CcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCC
Q 003399 678 LSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSG 728 (823)
Q Consensus 678 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 728 (823)
++.+ .....+++|+.|++++|.+... ..+..+++|+.|++++|.+..
T Consensus 140 i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 140 LKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 2222 1223456666666666665443 556666677777776665544
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=7.7e-13 Score=143.05 Aligned_cols=219 Identities=16% Similarity=0.116 Sum_probs=146.3
Q ss_pred CcceEEEccCCCCccccc-cccCccccceeeccCCCCc-ccchhhhhcCCCccE-EeCCCCcccccc-hhhcCCCCCcee
Q 003399 520 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLK-SLPSSLLSNLLNLYT-LDMPFSYIDHTA-DEFWKMNKLRHL 595 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~-L~L~~~~l~~lp-~~i~~L~~L~~L 595 (823)
++++.|+|++|.|+.+|. .|.++++|++|+|++|.+. .+|...|.++.+|+. +.+.++++..+| ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 578888899888888875 5788889999999888864 566665578888765 445556888884 457888899999
Q ss_pred eccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHH-HhhcCC-CCCcEEEeecCC
Q 003399 596 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLS-KSLCRL-SCLESLKLANES 673 (823)
Q Consensus 596 ~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~-~~l~~l-~~L~~L~l~~~~ 673 (823)
++++|.+....... +....++..|.+..+. ....++ ..+..+ ..++.|++++|
T Consensus 110 ~l~~n~l~~~~~~~----------------------~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~~N- 164 (350)
T 4ay9_X 110 LISNTGIKHLPDVH----------------------KIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKN- 164 (350)
T ss_dssp EEEEECCSSCCCCT----------------------TCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECCSS-
T ss_pred cccccccccCCchh----------------------hcccchhhhhhhcccc--ccccccccchhhcchhhhhhccccc-
Confidence 88888765422111 1222334444444332 111222 122333 35677777654
Q ss_pred CCCCCcEEeeCCcCcccCccEeEeecc-cCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCC
Q 003399 674 KMPRLSKIALAEYLFPHSLTHLSFSNT-VLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWL 752 (823)
Q Consensus 674 ~~~~L~~L~l~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 752 (823)
.++.+.-.. ....+|++|.+.++ .+.......++.+++|+.|+|++|.+.. ++. ..|.+|+.|.+.++.++
T Consensus 165 ---~i~~i~~~~-f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~--lp~--~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 165 ---GIQEIHNSA-FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LPS--YGLENLKKLRARSTYNL 236 (350)
T ss_dssp ---CCCEECTTS-STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC--CCS--SSCTTCCEEECTTCTTC
T ss_pred ---cccCCChhh-ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc--cCh--hhhccchHhhhccCCCc
Confidence 455543222 23457888888764 4433334567899999999999887764 332 56888999998888888
Q ss_pred cceeecccccccccEEEeec
Q 003399 753 EEWTMGNAAMPKLECLIINP 772 (823)
Q Consensus 753 ~~~~~~~~~lp~L~~L~i~~ 772 (823)
+.+|. ...+++|+.+++.+
T Consensus 237 ~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 237 KKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCC-TTTCCSCCEEECSC
T ss_pred CcCCC-chhCcChhhCcCCC
Confidence 88884 67899999998864
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=8.2e-13 Score=130.17 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=69.2
Q ss_pred cCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCccccee
Q 003399 540 ENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFI 619 (823)
Q Consensus 540 ~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l 619 (823)
..+.+|++|++++|.+..+| .+ ..+++|++|++++|.+..++ .+..+++|++|++++|.+....
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~------------- 104 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDK------------- 104 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGG-------------
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCccc-------------
Confidence 34445555555555555444 33 45555555555555443333 3444555555555554432100
Q ss_pred eccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeec
Q 003399 620 SALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSN 699 (823)
Q Consensus 620 ~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~ 699 (823)
... ++.+++|+.|+++++. .....+..+..+++|++|++++|. .+..+ .....+++|+.|++++
T Consensus 105 --------~~~-l~~l~~L~~L~Ls~n~--i~~~~~~~l~~l~~L~~L~L~~n~---~i~~~--~~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 105 --------IPN-LSGLTSLTLLDISHSA--HDDSILTKINTLPKVNSIDLSYNG---AITDI--MPLKTLPELKSLNIQF 168 (197)
T ss_dssp --------SCC-CTTCTTCCEEECCSSB--CBGGGHHHHTTCSSCCEEECCSCT---BCCCC--GGGGGCSSCCEEECTT
T ss_pred --------Chh-hcCCCCCCEEEecCCc--cCcHhHHHHhhCCCCCEEEccCCC---Ccccc--HhhcCCCCCCEEECCC
Confidence 011 4444455555555442 222234445555555555554331 01111 1123345555556656
Q ss_pred ccCCCCCcccccCCCCCCeEEeecCcc
Q 003399 700 TVLMDDPMPTLEKLPLLQVLKLKQNSY 726 (823)
Q Consensus 700 ~~l~~~~~~~l~~l~~L~~L~L~~~~~ 726 (823)
|.+.. .+.+..+++|+.|++++|.+
T Consensus 169 n~i~~--~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 169 DGVHD--YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp BCCCC--CTTGGGCSSCCEEEECBC--
T ss_pred CCCcC--hHHhccCCCCCEEEeeCccc
Confidence 65533 22555666666666665544
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.40 E-value=2.4e-13 Score=134.07 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=45.1
Q ss_pred cCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccc-cchhhcCCCCCcee
Q 003399 517 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDH-TADEFWKMNKLRHL 595 (823)
Q Consensus 517 ~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 595 (823)
..++.|+.|+++++.+..+| .+..+++|++|++++|.+..++ .+ ..+++|++|++++|.+.. .|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34455555555555555555 4555555555555555554443 33 555555555555555543 34455555555555
Q ss_pred eccCccc
Q 003399 596 NFGSITL 602 (823)
Q Consensus 596 ~l~~~~~ 602 (823)
++++|.+
T Consensus 118 ~Ls~n~i 124 (197)
T 4ezg_A 118 DISHSAH 124 (197)
T ss_dssp ECCSSBC
T ss_pred EecCCcc
Confidence 5555544
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=9e-13 Score=131.14 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=95.4
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccccc-ccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
.++++.|.+.++... .+....|..+++|++|++++|.+..+|.. +..+.+|++|++++|.+..+|+..++++++|
T Consensus 27 ~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 677888888777653 33445678888888999988888877654 5788888899988888888887755888888
Q ss_pred cEEeCCCCcccccchh-hcCCCCCceeeccCcccCCCCCCCcCCCcccceeecc
Q 003399 570 YTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISAL 622 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~ 622 (823)
++|++++|.+..+|.. +.++++|++|++++|.+.......+.++.+|+.+++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 9999888888888654 6788888888888887764322234455555555554
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=1.9e-12 Score=147.70 Aligned_cols=187 Identities=19% Similarity=0.172 Sum_probs=135.6
Q ss_pred ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccC
Q 003399 544 LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALH 623 (823)
Q Consensus 544 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~ 623 (823)
+|++|++++|.+..+|..+ +++|++|+|++|.+..+| ..+++|++|++++|.+.. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip--------------- 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LP--------------- 116 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CC---------------
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cc---------------
Confidence 8999999999999999877 378999999999999999 568999999999998764 11
Q ss_pred CCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCC
Q 003399 624 PCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLM 703 (823)
Q Consensus 624 ~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~ 703 (823)
. +.. +|+.|+++++. ...+|. .+++|+.|++++| .+..+.- .+++|+.|+|++|.++
T Consensus 117 ------~-l~~--~L~~L~Ls~N~---l~~lp~---~l~~L~~L~Ls~N----~l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 117 ------E-LPA--SLKHLDVDNNQ---LTMLPE---LPALLEYINADNN----QLTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ------C-CCT--TCCEEECCSSC---CSCCCC---CCTTCCEEECCSS----CCSCCCC----CCTTCCEEECCSSCCS
T ss_pred ------h-hhc--CCCEEECCCCc---CCCCCC---cCccccEEeCCCC----ccCcCCC----cCCCcCEEECCCCCCC
Confidence 1 222 67788887763 223444 5677888888765 2332211 3678888899888875
Q ss_pred CCCcccccCCCCCCeEEeecCccCCccccccCCCCCcc-------cEEeeecCCCCcceeecccccccccEEEeecCCCC
Q 003399 704 DDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNL-------KVLHLKSMLWLEEWTMGNAAMPKLECLIINPCAYL 776 (823)
Q Consensus 704 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~l~~~~~~~~~lp~L~~L~i~~C~~l 776 (823)
. .+. +. ++|+.|+|++|.+.. ++. +.. +| +.|+|++| .+..+|..+..+++|+.|++++|+..
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~~--lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLES--LPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCSS--CCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred C-cch-hh--CCCCEEECcCCCCCc--hhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCC
Confidence 5 344 55 889999998887763 333 222 66 88888887 46778877777888888888888866
Q ss_pred CCCchhccCC
Q 003399 777 KKMPEQLWCI 786 (823)
Q Consensus 777 ~~lp~~l~~l 786 (823)
..+|..+..+
T Consensus 244 ~~~p~~l~~l 253 (571)
T 3cvr_A 244 SRIRESLSQQ 253 (571)
T ss_dssp HHHHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 6666655544
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=9.5e-13 Score=136.00 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=116.3
Q ss_pred HhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCce
Q 003399 515 IYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRH 594 (823)
Q Consensus 515 ~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 594 (823)
.+..++.|++|++++|.+..+| .+..+.+|++|++++|.+..+|+ + +++++|++|++++|.+..+|.... ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 3577889999999999998888 68899999999999999999887 5 899999999999999888876433 89999
Q ss_pred eeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCC
Q 003399 595 LNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESK 674 (823)
Q Consensus 595 L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 674 (823)
|++++|.+.. ++. ++.+++|+.|+++++. ...++ .+..+++|+.|++++|
T Consensus 111 L~L~~N~l~~-----------------------~~~-l~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~N-- 160 (263)
T 1xeu_A 111 LFLDNNELRD-----------------------TDS-LIHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHGN-- 160 (263)
T ss_dssp EECCSSCCSB-----------------------SGG-GTTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTTS--
T ss_pred EEccCCccCC-----------------------Chh-hcCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCCC--
Confidence 9999887653 122 6677778888877763 22333 5677788888888765
Q ss_pred CCCCcEEeeCCcCcccCccEeEeecccCCCC
Q 003399 675 MPRLSKIALAEYLFPHSLTHLSFSNTVLMDD 705 (823)
Q Consensus 675 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~ 705 (823)
.+..+ .....+++|+.|++++|.+...
T Consensus 161 --~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 161 --EITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --CCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred --cCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 23333 3345678888888888877554
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=2.5e-14 Score=164.03 Aligned_cols=201 Identities=19% Similarity=0.183 Sum_probs=130.9
Q ss_pred cCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCc-cc-------------ccchhhcCCCCCceee-ccCcccCC
Q 003399 540 ENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSY-ID-------------HTADEFWKMNKLRHLN-FGSITLPA 604 (823)
Q Consensus 540 ~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~-------------~lp~~i~~L~~L~~L~-l~~~~~~~ 604 (823)
..+++|+.|+|++|.+..+|.++ ++|++|+.|++++|. +. ..|..++.+++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~--- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY--- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH---
T ss_pred ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc---
Confidence 45667777777777777777776 777777777775552 11 2233444455555543 22221
Q ss_pred CCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeC
Q 003399 605 HPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALA 684 (823)
Q Consensus 605 ~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~ 684 (823)
+.+|+.+.+.++ ....++. ..|+.|++++| .++.+ .
T Consensus 422 ------------------------------~~~L~~l~l~~n---~i~~l~~-----~~L~~L~Ls~n----~l~~l--p 457 (567)
T 1dce_A 422 ------------------------------LDDLRSKFLLEN---SVLKMEY-----ADVRVLHLAHK----DLTVL--C 457 (567)
T ss_dssp ------------------------------HHHHHHHHHHHH---HHHHHHH-----TTCSEEECTTS----CCSSC--C
T ss_pred ------------------------------cchhhhhhhhcc---cccccCc-----cCceEEEecCC----CCCCC--c
Confidence 112222222222 1222221 24778888765 23332 1
Q ss_pred CcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcce--eeccccc
Q 003399 685 EYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEW--TMGNAAM 762 (823)
Q Consensus 685 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~l 762 (823)
....+++|+.|+|++|.+. ..|..++.+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++| .+..+ |..++.+
T Consensus 458 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l 532 (567)
T 1dce_A 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSC 532 (567)
T ss_dssp CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcC
Confidence 2456788999999999886 667789999999999999888876 45 6788999999999987 46666 7788899
Q ss_pred ccccEEEeecCCCCCCCchh----ccCCCCCcEEEe
Q 003399 763 PKLECLIINPCAYLKKMPEQ----LWCIKSLNKFDC 794 (823)
Q Consensus 763 p~L~~L~i~~C~~l~~lp~~----l~~l~~L~~L~l 794 (823)
++|+.|++++|+ +..+|.. +..+|+|+.|++
T Consensus 533 ~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 533 PRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 999999999987 4444432 344788888863
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.5e-14 Score=165.98 Aligned_cols=177 Identities=21% Similarity=0.219 Sum_probs=112.5
Q ss_pred cCCCcceEEEccCCCCccccccccCccccceeeccCCC-------------Cc-ccchhhhhcCCCccEEe-CCCCcccc
Q 003399 517 GMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPS-------------LK-SLPSSLLSNLLNLYTLD-MPFSYIDH 581 (823)
Q Consensus 517 ~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~-------------i~-~lp~~i~~~L~~L~~L~-L~~~~l~~ 581 (823)
..++.|+.|+|+++.++.+|..|++|.+|+.|+++++. +. ..|..+ ++|.+|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l-~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL-QYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHH-HHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHH-HHHHhcccCcchhhcccch
Confidence 56889999999999999999999999999999987653 23 344455 8999999998 66555444
Q ss_pred cch------hhcC--CCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhh
Q 003399 582 TAD------EFWK--MNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSL 653 (823)
Q Consensus 582 lp~------~i~~--L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~ 653 (823)
++. .+.. ...|+.|++++|.+.. ++. ++.+++|+.|+++++ ....
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----------------------lp~-~~~l~~L~~L~Ls~N---~l~~ 477 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----------------------LCH-LEQLLLVTHLDLSHN---RLRA 477 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----------------------CCC-GGGGTTCCEEECCSS---CCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-----------------------CcC-ccccccCcEeecCcc---cccc
Confidence 432 1222 1258888888876643 223 666777888888777 3335
Q ss_pred HHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCC-cccccCCCCCCeEEeecCccC
Q 003399 654 LSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDP-MPTLEKLPLLQVLKLKQNSYS 727 (823)
Q Consensus 654 l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~ 727 (823)
+|..++.+++|+.|+|++| .++.+. +...+++|+.|+|++|.+.... +..++.+++|+.|+|++|.+.
T Consensus 478 lp~~~~~l~~L~~L~Ls~N----~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDN----ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCGGGGGCTTCCEEECCSS----CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cchhhhcCCCCCEEECCCC----CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 6666666666666666644 222211 2334455555555555554433 445555555555555555443
No 116
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.34 E-value=1.3e-12 Score=144.68 Aligned_cols=279 Identities=13% Similarity=0.072 Sum_probs=161.5
Q ss_pred CCeEeccccHHHHHHHH-Hc---C-CCCeEEEEE--EecCCchHHHHHHHHhCCcccccC-----cc-eeEEEeCCCCCC
Q 003399 157 RDTVGLDDRMEELLDLL-IE---G-PPQLSVVVI--LDSIGLDKTAFAGEAYNSSYVKHY-----FD-CHAWISEPYSNE 223 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L-~~---~-~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~~-----F~-~~~wv~~~vs~~ 223 (823)
..++||+++++.+.+++ .. + ......+.| +|++|+||||||+++++ +.... |+ .++|+. +...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~ 97 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVN--AFNA 97 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEE--GGGC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEE--CCCC
Confidence 68999999999999998 42 2 012445555 99999999999999998 44332 22 467887 7777
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCCh--------hhHHHHHhcCCCC---
Q 003399 224 YDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTI--------RMWDVIREILPDN--- 290 (823)
Q Consensus 224 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~--------~~~~~l~~~~~~~--- 290 (823)
.+...++..++.+++.... ....+..+....+.+.+. +++++||+||+|.. +.+..+...+...
T Consensus 98 ~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 7888999999999976432 122345566677777775 68999999999764 2333333222111
Q ss_pred C--CCcEEEEeeCcchhh-------h----c----c------------cccC----CCCCCCChhhhHHhHHHHcC----
Q 003399 291 Q--NGSRVLITLTDIEMV-------T----S----F------------QLED----GENIRLDLVPTGGPLRATYK---- 333 (823)
Q Consensus 291 ~--~gs~IivTTR~~~v~-------~----~----~------------~f~~----~~~~~~~~~~~~~~i~~~c~---- 333 (823)
+ ....||+|||...+. . . + .|.. ......--.+....|++.|+
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 345588888765422 1 0 1 1110 00001112456778889999
Q ss_pred --Ccceeeee-eccc--------cccccc-----CCcCCH-HHHHHhcccCCCCCCchhHhhhhcccC--CCcccchhHH
Q 003399 334 --GWPFFILY-HGSI--------SLEENI-----GEAVEI-PLVLRYFKYCSLPFCLKPCFLYLSVFT--AHLEISTRQL 394 (823)
Q Consensus 334 --GlPLai~~-~~~~--------~~~~~~-----~~~~~i-~~~l~~~sy~~L~~~~k~cfl~~s~fp--~~~~i~~~~l 394 (823)
|.|..+.. .... .+.+.. ...... ...+ .-++..||++.+.++..++.+. .+..++..++
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~-~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~ 333 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQ-THELEALSIHELIILRLIAEATLGGMEWINAGLL 333 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchH-HHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 99954332 1100 000100 000011 2345 5677889998999988888654 3334555555
Q ss_pred HHHHH--h---cCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCcEeeEEcCcch
Q 003399 395 YQLWI--A---EGFIPDNSEATAESYLEQLIKEGFVEAKKRKAGGTINTCSIPGCW 445 (823)
Q Consensus 395 i~~w~--a---~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv 445 (823)
...+. + .|. ..........+++.|.+.+++...... .|+...|++|++.
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~~-~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 334 RQRYEDASLTMYNV-KPRGYTQYHIYLKHLTSLGLVDAKPSG-RGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHTTSEEEECC--------CCEEEEC
T ss_pred HHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhCCCEEeeccc-CCCCCceeEEEeC
Confidence 54432 2 121 111234467899999999999876432 2222345555544
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=5.4e-12 Score=126.56 Aligned_cols=151 Identities=20% Similarity=0.274 Sum_probs=98.4
Q ss_pred eEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcc
Q 003399 523 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSIT 601 (823)
Q Consensus 523 rvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~ 601 (823)
+.++++++.++.+|..+. .+|++|++++|.|..+|+..+..+++|++|+|++|.+..+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 577888888888887665 6788888888888888875448888888888888888877 6678888888888888887
Q ss_pred cCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEE
Q 003399 602 LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKI 681 (823)
Q Consensus 602 ~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L 681 (823)
+.... ...+..+++|+.|+++++. .....+..+
T Consensus 92 l~~l~----------------------~~~f~~l~~L~~L~L~~N~--l~~~~~~~~----------------------- 124 (220)
T 2v9t_B 92 ITELP----------------------KSLFEGLFSLQLLLLNANK--INCLRVDAF----------------------- 124 (220)
T ss_dssp CCCCC----------------------TTTTTTCTTCCEEECCSSC--CCCCCTTTT-----------------------
T ss_pred CCccC----------------------HhHccCCCCCCEEECCCCC--CCEeCHHHc-----------------------
Confidence 65311 1114455666666665552 111111122
Q ss_pred eeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccC
Q 003399 682 ALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYS 727 (823)
Q Consensus 682 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 727 (823)
..+++|+.|+|++|.+.......+..+++|+.|+|++|.+.
T Consensus 125 -----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 125 -----QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -----TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred -----CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 22445555555566555444455666677777777666543
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=1.4e-12 Score=141.50 Aligned_cols=174 Identities=21% Similarity=0.246 Sum_probs=92.9
Q ss_pred eEEEccCCCCccccccccCccccceeeccCCCCcccchhhhh-cCCCccEEeCCCCcccccch-hhcCCCCCceeeccCc
Q 003399 523 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLS-NLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSI 600 (823)
Q Consensus 523 rvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~-~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 600 (823)
++++++++.+..+|..+. ..+++|+|++|.|..+|...+. ++.+|++|+|++|.+..+|. .+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665443 2466666666666666655434 66666666666666666643 4666666666666666
Q ss_pred ccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcE
Q 003399 601 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSK 680 (823)
Q Consensus 601 ~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 680 (823)
.+..... ..+..+++|+.|+++++. .....+..+..+++|+.|+|++| .+..
T Consensus 99 ~l~~~~~----------------------~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N----~l~~ 150 (361)
T 2xot_A 99 HLHTLDE----------------------FLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQN----QISR 150 (361)
T ss_dssp CCCEECT----------------------TTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSS----CCCS
T ss_pred cCCcCCH----------------------HHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCC----cCCe
Confidence 5432111 113444555555555442 11112334445555555555543 1222
Q ss_pred EeeC---CcCcccCccEeEeecccCCCCCcccccCCCC--CCeEEeecCcc
Q 003399 681 IALA---EYLFPHSLTHLSFSNTVLMDDPMPTLEKLPL--LQVLKLKQNSY 726 (823)
Q Consensus 681 L~l~---~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~ 726 (823)
+... +...+++|+.|+|++|.+.......+..++. |+.|+|.+|.+
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 2111 1133567777777777765554455666665 36777776654
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=7.4e-13 Score=156.71 Aligned_cols=132 Identities=18% Similarity=0.140 Sum_probs=81.8
Q ss_pred CCceEEEEEEcCCcccccccc--CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccce
Q 003399 470 KNAKRLNAVERWDDFACLDDY--DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRY 547 (823)
Q Consensus 470 ~~~r~l~sl~~~~~~~~~~~~--~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~ 547 (823)
..++++ .+..+......... ..+|+.+.+.......-....++..|..++.|++|+|++|.+..+|..+.++.+|++
T Consensus 173 ~~~~~l-~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKI-ELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceE-EeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 446666 66544433322222 344444443332211101124567789999999999999999999999999999999
Q ss_pred eeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccC
Q 003399 548 LKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLP 603 (823)
Q Consensus 548 L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~ 603 (823)
|+|++|.|..+|..+ ++|.+|++|+|++|.|+.+|..+++|++|++|+|++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 252 LYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC
T ss_pred EEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC
Confidence 999999999999998 9999999999999999999999999999999999999775
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=7.3e-12 Score=125.62 Aligned_cols=132 Identities=18% Similarity=0.236 Sum_probs=98.7
Q ss_pred cCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCC
Q 003399 490 YDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 568 (823)
Q Consensus 490 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 568 (823)
..++++.|.+.++... .+....|..+++|++|+|++|.+..+ |..+..+.+|++|+|++|.|..+|+.++.++++
T Consensus 30 l~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 30 LPETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CCTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 3567888888777652 34445678888888888888888755 677888888888888888888888876678888
Q ss_pred ccEEeCCCCccccc-chhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccc
Q 003399 569 LYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 569 L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
|++|+|++|.+..+ |..+..+++|++|++++|.+...... .+..+++|+.|+++++.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG----------------------TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT----------------------TTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH----------------------HHhCCCCCCEEEeCCCC
Confidence 88888888888877 45678888888888888877642211 25566677777776653
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=9.2e-12 Score=125.75 Aligned_cols=138 Identities=21% Similarity=0.252 Sum_probs=107.3
Q ss_pred cccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccccc-ccCccccceeeccCCCCcccchhh
Q 003399 484 FACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSL 562 (823)
Q Consensus 484 ~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i 562 (823)
...+....++|+.|.+.++... ...+..|..+++|++|+|++|.+..+|.. +..+.+|++|+|++|.+..+|+..
T Consensus 32 ~~ip~~~~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 32 ASVPAGIPTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp SSCCSCCCTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCCCCCCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 3333334788899998887763 33456788899999999999998887754 578999999999999999988876
Q ss_pred hhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEE
Q 003399 563 LSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLR 642 (823)
Q Consensus 563 ~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~ 642 (823)
+..+.+|++|+|++|.+..+|..+..+++|++|++++|.+..... ..+..+++|+.|+
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~----------------------~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH----------------------GAFDRLSSLTHAY 165 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT----------------------TTTTTCTTCCEEE
T ss_pred hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH----------------------HHHhCCCCCCEEE
Confidence 688999999999999999999889999999999999987764221 1255667777777
Q ss_pred eeccc
Q 003399 643 IQGDL 647 (823)
Q Consensus 643 i~~~~ 647 (823)
+.++.
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 76653
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=9.3e-12 Score=124.82 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=100.4
Q ss_pred eEEEccCCCCccccccccCccccceeeccCCCCcccch-hhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCc
Q 003399 523 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPS-SLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSI 600 (823)
Q Consensus 523 rvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 600 (823)
+.++++++.++.+|..+.. .+++|+|++|.+..+++ ..++++++|++|+|++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5788888888888876653 56889999988888743 434888899999999888888865 6888888888888888
Q ss_pred ccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcE
Q 003399 601 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSK 680 (823)
Q Consensus 601 ~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~ 680 (823)
.+.... ...++.+++|+.|+++++. .....+..+
T Consensus 92 ~l~~~~----------------------~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~---------------------- 125 (220)
T 2v70_A 92 RLENVQ----------------------HKMFKGLESLKTLMLRSNR--ITCVGNDSF---------------------- 125 (220)
T ss_dssp CCCCCC----------------------GGGGTTCSSCCEEECTTSC--CCCBCTTSS----------------------
T ss_pred ccCccC----------------------HhHhcCCcCCCEEECCCCc--CCeECHhHc----------------------
Confidence 764311 1125556666666666552 111111122
Q ss_pred EeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCC
Q 003399 681 IALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSG 728 (823)
Q Consensus 681 L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 728 (823)
..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+..
T Consensus 126 ------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 126 ------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ------TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ------CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 234555556666666655555666777777777777665543
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=9.9e-12 Score=125.51 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=53.1
Q ss_pred eEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccCcc
Q 003399 523 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSIT 601 (823)
Q Consensus 523 rvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 601 (823)
..++.+++.+..+|..+. .+|++|+|++|.+..+++..+.++.+|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456666666777776554 6777777777777766444336777777777777777777643 5667777777777766
Q ss_pred cC
Q 003399 602 LP 603 (823)
Q Consensus 602 ~~ 603 (823)
+.
T Consensus 100 l~ 101 (229)
T 3e6j_A 100 LT 101 (229)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=5.6e-12 Score=120.68 Aligned_cols=84 Identities=24% Similarity=0.152 Sum_probs=57.1
Q ss_pred CCCcceEEEccCCCCc--cccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccc-cchhhcCCCCCce
Q 003399 518 MFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDH-TADEFWKMNKLRH 594 (823)
Q Consensus 518 ~~~~LrvL~L~~~~l~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~ 594 (823)
..+.|+.|++++|.+. .+|..+..+.+|++|++++|.+..+ ..+ +.+++|++|++++|.+.. +|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777777766 6666667777777777777776666 444 677777777777776666 5555666777777
Q ss_pred eeccCcccC
Q 003399 595 LNFGSITLP 603 (823)
Q Consensus 595 L~l~~~~~~ 603 (823)
|++++|.+.
T Consensus 100 L~Ls~N~l~ 108 (168)
T 2ell_A 100 LNLSGNKLK 108 (168)
T ss_dssp EECBSSSCC
T ss_pred EeccCCccC
Confidence 777776654
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=5e-12 Score=118.32 Aligned_cols=128 Identities=20% Similarity=0.121 Sum_probs=90.8
Q ss_pred cCCCcceEEEccCCCCc--cccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccc-cchhhcCCCCCc
Q 003399 517 GMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDH-TADEFWKMNKLR 593 (823)
Q Consensus 517 ~~~~~LrvL~L~~~~l~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~ 593 (823)
...+.|+.|++++|.+. .+|..++.+.+|++|++++|.+..+ ..+ +++++|++|++++|.+.. +|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34567888888888877 7787778888888888888888777 455 788888888888888777 677677788888
Q ss_pred eeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHH----HhhcCCCCCcEEEe
Q 003399 594 HLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLS----KSLCRLSCLESLKL 669 (823)
Q Consensus 594 ~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~----~~l~~l~~L~~L~l 669 (823)
+|++++|.+.... .... ++.+++|+.|+++++. ...++ ..+..+++|+.|++
T Consensus 92 ~L~ls~N~i~~~~--------------------~~~~-~~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNKIKDLS--------------------TIEP-LKKLENLKSLDLFNCE---VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSCCCSHH--------------------HHGG-GGGCTTCCEEECTTCG---GGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCcCCChH--------------------HHHH-HhhCCCCCEEeCcCCc---ccchHHHHHHHHHHCCCcccccC
Confidence 8888887654310 0112 6677778888887773 22222 35666777777765
Q ss_pred e
Q 003399 670 A 670 (823)
Q Consensus 670 ~ 670 (823)
+
T Consensus 148 ~ 148 (149)
T 2je0_A 148 Y 148 (149)
T ss_dssp B
T ss_pred C
Confidence 4
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.27 E-value=2.2e-11 Score=122.11 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=92.0
Q ss_pred EEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCccccceeeccCCCC
Q 003399 477 AVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSL 555 (823)
Q Consensus 477 sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i 555 (823)
.+.++.....+....+.++.|.+.++.... ......|..+++|++|+|++|.+..++. .+..+.+|++|+|++|.+
T Consensus 17 ~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~---~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 17 DCSNQKLNKIPEHIPQYTAELRLNNNEFTV---LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCE---ECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCcccCccCCCCCCCEEEcCCCcCCc---cCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 444443333333335556667666665421 1122346677777777777777775544 577777777777777777
Q ss_pred cccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCC
Q 003399 556 KSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGR 634 (823)
Q Consensus 556 ~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~ 634 (823)
..+|+..++++++|++|+|++|.+..+ |..+..+++|++|++++|.+.... +..+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~ 151 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA----------------------PGAFDT 151 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC----------------------TTTTTT
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC----------------------HHHhcC
Confidence 777766447777777777777777766 455777777777777777665421 222666
Q ss_pred CCccceEEeeccc
Q 003399 635 LPNLRNLRIQGDL 647 (823)
Q Consensus 635 l~~L~~L~i~~~~ 647 (823)
+++|+.|+++++.
T Consensus 152 l~~L~~L~L~~N~ 164 (220)
T 2v70_A 152 LHSLSTLNLLANP 164 (220)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEecCcC
Confidence 7777777777764
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=3.5e-11 Score=130.57 Aligned_cols=124 Identities=18% Similarity=0.063 Sum_probs=87.3
Q ss_pred EEEcCCccccccccCCCccEEEeecCCCCCCCccchHHHhc-CCCcceEEEccCCCCcccc-ccccCccccceeeccCCC
Q 003399 477 AVERWDDFACLDDYDSQLHSFLCCSPESRHIDPIDWEKIYG-MFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPS 554 (823)
Q Consensus 477 sl~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~-~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~ 554 (823)
...+......+....+.++.|.+.++... .+....|. .+++|++|+|++|.+..++ ..+..+.+|++|+|++|.
T Consensus 24 ~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 24 SCSKQQLPNVPQSLPSYTALLDLSHNNLS----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp ECCSSCCSSCCSSCCTTCSEEECCSSCCC----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCcCccCccCCCCCCEEECCCCCCC----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 44444444343444666777777777652 33444555 7888888888888877665 457788888888888888
Q ss_pred CcccchhhhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCcccCC
Q 003399 555 LKSLPSSLLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITLPA 604 (823)
Q Consensus 555 i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~ 604 (823)
+..+|+..+.++.+|++|+|++|.+..+ |..+..+++|++|+|++|.+..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 8877776557888888888888877777 4567788888888888877664
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=2.6e-11 Score=117.02 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=41.4
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch--hhcCCCCCceeecc
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD--EFWKMNKLRHLNFG 598 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~ 598 (823)
+|++|++++|.+..+ ..++.+.+|++|++++|.+..+|+.+++.+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 555555555555444 345555555555555555555554433455555555555555555544 44555555555555
Q ss_pred Cccc
Q 003399 599 SITL 602 (823)
Q Consensus 599 ~~~~ 602 (823)
+|.+
T Consensus 122 ~N~i 125 (176)
T 1a9n_A 122 RNPV 125 (176)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 5443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=2.1e-11 Score=114.01 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=89.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcc-cchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-LPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 569 (823)
.++++.|.+.++.... ...+..+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..+ +++++|
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence 5678888887776530 12334678899999999999998877 678899999999999999998 66555 789999
Q ss_pred cEEeCCCCcccccc--hhhcCCCCCceeeccCcccCC
Q 003399 570 YTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLPA 604 (823)
Q Consensus 570 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~ 604 (823)
++|++++|.+..+| ..+..+++|++|++++|.+..
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 99999999998875 778999999999999987764
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=4.9e-11 Score=114.01 Aligned_cols=133 Identities=20% Similarity=0.185 Sum_probs=100.3
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcc-cchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-LPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 569 (823)
.++++.|.+.++.... ..++..+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..+ +++++|
T Consensus 23 ~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTC
T ss_pred cccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCC
Confidence 5778888887776530 12334578889999999999998877 778889999999999999887 55554 789999
Q ss_pred cEEeCCCCcccccc--hhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccc
Q 003399 570 YTLDMPFSYIDHTA--DEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 570 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
++|++++|.+..+| ..+..+++|++|++++|.+..... .....+..+++|+.|++.++.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-------------------~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND-------------------YRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-------------------HHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH-------------------HHHHHHHhCccCcEecCCCCC
Confidence 99999999988876 678899999999999987754211 000126677777777777763
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=5e-12 Score=149.60 Aligned_cols=119 Identities=14% Similarity=0.066 Sum_probs=80.1
Q ss_pred ccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccCcccCCCC
Q 003399 527 LGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHP 606 (823)
Q Consensus 527 L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~ 606 (823)
++.+.+...|..+..+.+|+.|+|++|.+..+|..+ .++.+|++|+|++|.++.+|..+++|++|++|+|++|.+..
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-- 284 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-- 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--
Confidence 333444456778889999999999999999999998 79999999999999999999999999999999999998763
Q ss_pred CCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecC
Q 003399 607 GKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANE 672 (823)
Q Consensus 607 ~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 672 (823)
+| ..++.|++|+.|+++++ ....+|..+.++++|+.|+|++|
T Consensus 285 lp---------------------~~~~~l~~L~~L~L~~N---~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 285 LP---------------------AELGSCFQLKYFYFFDN---MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CC---------------------SSGGGGTTCSEEECCSS---CCCCCCSSTTSCTTCCCEECTTS
T ss_pred cC---------------------hhhcCCCCCCEEECCCC---CCCccChhhhcCCCccEEeCCCC
Confidence 22 11455556666666655 22344555555555555555543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=7.2e-11 Score=113.81 Aligned_cols=128 Identities=17% Similarity=0.190 Sum_probs=90.6
Q ss_pred hcCCCcceEEEccCCCCccccccccCcc-ccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhh-cCCCCCc
Q 003399 516 YGMFKLLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEF-WKMNKLR 593 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~ 593 (823)
+..+..|+.|++++|.+..+|. +..+. +|++|++++|.+..+ +.+ +++++|++|++++|.+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4667889999999999888865 55655 899999999998888 455 88999999999999999888665 8899999
Q ss_pred eeeccCcccCCCCC-CCcCCCcccceeeccCC-Cccccc----ccCCCCccceEEeecc
Q 003399 594 HLNFGSITLPAHPG-KYCGSLENLNFISALHP-CCCTED----ILGRLPNLRNLRIQGD 646 (823)
Q Consensus 594 ~L~l~~~~~~~~~~-~~i~~L~~L~~l~~~~~-~~~~~~----~l~~l~~L~~L~i~~~ 646 (823)
+|++++|.+..... ..++.+++|+.+++..+ ...++. .+..+++|+.|+++.+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 99999988754221 13445556666655522 112222 1445555555555554
No 133
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.11 E-value=7.2e-11 Score=127.46 Aligned_cols=266 Identities=12% Similarity=0.075 Sum_probs=152.8
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCC------CHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEY------DADQIV 230 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~------~~~~~~ 230 (823)
..++||+++++.+.+++..+ +++.|+|++|+|||||++++++. . . .+|+. +.... +...+.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~--~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILID--CRELYAERGHITREELI 78 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEE--HHHHHHTTTCBCHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEE--eecccccccCCCHHHHH
Confidence 68999999999999998763 68999999999999999999973 2 1 67777 54332 555666
Q ss_pred HHHHHHhCCC--------------CCCcccccCCHHHHHHHHHHHhcC-CcEEEEEecCCChhh---------HHHHHhc
Q 003399 231 DIIIKFLMPS--------------SRLSEIEDKNYEMKKIILHEYIMT-KRYLIVIDDVWTIRM---------WDVIREI 286 (823)
Q Consensus 231 ~~i~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw~~~~---------~~~l~~~ 286 (823)
..+...+... .........+..++...+.+.... ++++||+||++.... +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 6666655320 000001224556666677666653 499999999976432 3333322
Q ss_pred CCCCCCCcEEEEeeCcchh-h------h---------c--c---cccCC-----------CCCCCChhhhHHhHHHHcCC
Q 003399 287 LPDNQNGSRVLITLTDIEM-V------T---------S--F---QLEDG-----------ENIRLDLVPTGGPLRATYKG 334 (823)
Q Consensus 287 ~~~~~~gs~IivTTR~~~v-~------~---------~--~---~f~~~-----------~~~~~~~~~~~~~i~~~c~G 334 (823)
... .++.++|+|++...+ . . . + .|... ......-.+...+|+..|+|
T Consensus 159 ~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDG 237 (350)
T ss_dssp HHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTT
T ss_pred HHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 221 247889999886532 1 1 0 0 01000 00001123467789999999
Q ss_pred cceeeeeeccccc---cccc---CCcCCHHHHHHhcccCCC---CCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCC
Q 003399 335 WPFFILYHGSISL---EENI---GEAVEIPLVLRYFKYCSL---PFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIP 405 (823)
Q Consensus 335 lPLai~~~~~~~~---~~~~---~~~~~i~~~l~~~sy~~L---~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~ 405 (823)
.|+++.......+ .... ...+.+...+ .-.+..+ ++..+..+..+|. + .++...+........ -
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~- 310 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI-MGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG-T- 310 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-C-
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH-HHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-C-
Confidence 9998876211111 0000 0001111111 1112222 6668888888887 2 234455544432211 0
Q ss_pred CChHHHHHHHHHHHHhcCceeeeecCCCCcEeeEEc-CcchHHHHH
Q 003399 406 DNSEATAESYLEQLIKEGFVEAKKRKAGGTINTCSI-PGCWRPVLL 450 (823)
Q Consensus 406 ~~~~~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~m-Hdlv~d~a~ 450 (823)
.........+++.|.+.+++.... ..|++ |.+++.+.+
T Consensus 311 ~~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 311 KIPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATVLR 349 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHHHc
Confidence 112345678999999999998652 23554 667777653
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=8.4e-12 Score=123.00 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=98.0
Q ss_pred hHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCC
Q 003399 512 WEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNK 591 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~ 591 (823)
++..+..+++|++|++++|.+..+| .+..+.+|++|++++|.+..+|..+ +.+++|++|++++|.+..+| .+..+++
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 3457788889999999988888888 7888889999999998888888776 77888999999988888877 5888889
Q ss_pred CceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHH----------HhhcCC
Q 003399 592 LRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLS----------KSLCRL 661 (823)
Q Consensus 592 L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~----------~~l~~l 661 (823)
|++|++++|.+... ..+.. +..+++|+.|+++++. .....| ..+..+
T Consensus 117 L~~L~l~~N~i~~~--------------------~~~~~-l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 117 LRVLYMSNNKITNW--------------------GEIDK-LAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SSEEEESEEECCCH--------------------HHHHH-HTTTTTCSEEEECSCH--HHHHHHTTTTHHHHHHHHHHHC
T ss_pred CCEEECCCCcCCch--------------------hHHHH-HhcCCCCCEEEecCCc--cccccccccchHHHHHHHHHhC
Confidence 99998888876430 11122 7778888888888774 211111 235666
Q ss_pred CCCcEEE
Q 003399 662 SCLESLK 668 (823)
Q Consensus 662 ~~L~~L~ 668 (823)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 6777665
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=4.9e-10 Score=119.84 Aligned_cols=283 Identities=13% Similarity=0.031 Sum_probs=167.7
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcC-CCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhc----
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGM-FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSN---- 565 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~-~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~---- 565 (823)
.++++.|.+.+.-. .... ..+.. +++|++|||+++.+..+...-+.+..++++.+..+ .+|+..|.+
T Consensus 24 ~~~l~~L~l~g~i~----~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN----AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC----HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred hCceeEEEEecccc----HHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence 45677777765422 1112 23333 88899999999987722211223333455555544 556665577
Q ss_pred ----CCCccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCC-----Cccc-ccccCC
Q 003399 566 ----LLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHP-----CCCT-EDILGR 634 (823)
Q Consensus 566 ----L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~-----~~~~-~~~l~~ 634 (823)
+.+|+.|+|.+ .++.++. .+..+++|+.|+++++.+.......+..+.++..+..... ...+ ...+.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 88888888888 7888864 4788888888888887655322224444444444433310 0000 111334
Q ss_pred CCccc-eEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCc-CcccCccEeEeecccCCCCCcccccC
Q 003399 635 LPNLR-NLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEY-LFPHSLTHLSFSNTVLMDDPMPTLEK 712 (823)
Q Consensus 635 l~~L~-~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~ 712 (823)
+.+|+ .+.+..... ....+...-....++..+.+.+.. ........ ..+++|+.|+|++|.+.......+..
T Consensus 175 ~~~L~~~i~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~l-----~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 175 GEPLETTIQVGAMGK-LEDEIMKAGLQPRDINFLTIEGKL-----DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp SCCCEEEEEECTTCC-HHHHHHHTTCCGGGCSEEEEEECC-----CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred ccccceeEEecCCCc-HHHHHhhcccCccccceEEEeeee-----cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 45555 344433210 111111111133455555554321 00000000 13678999999988876666677899
Q ss_pred CCCCCeEEeecCccCCccccccCCCCCccc-EEeeecCCCCccee-ecccccccccEEEeecCCCCCCCch-hccCCCCC
Q 003399 713 LPLLQVLKLKQNSYSGRKLTCGSYGFPNLK-VLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPE-QLWCIKSL 789 (823)
Q Consensus 713 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~-~~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L 789 (823)
+++|+.|.|.++ ... .-...+.++++|+ .|.+.+ .++.++ ..+..+++|+.|.+.++. ++.++. .+.++++|
T Consensus 249 ~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPS 323 (329)
T ss_dssp CTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCC
T ss_pred CCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcch
Confidence 999999999865 322 3344567888999 999987 577775 456788999999987664 666665 68899999
Q ss_pred cEEE
Q 003399 790 NKFD 793 (823)
Q Consensus 790 ~~L~ 793 (823)
+.|.
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 9886
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=4.2e-10 Score=110.08 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=47.8
Q ss_pred eEEEccCCCCccccccccCccccceeeccCCCCcccchh-hhhcCCCccEEeCCCCccccc-chhhcCCCCCceeeccCc
Q 003399 523 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSS-LLSNLLNLYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSI 600 (823)
Q Consensus 523 rvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~ 600 (823)
++++++++.+..+|..+.. +|++|++++|.+..+|+. +++++++|++|+|++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4566666666666655543 666666666666666543 126666666666666666655 445666666666666666
Q ss_pred ccC
Q 003399 601 TLP 603 (823)
Q Consensus 601 ~~~ 603 (823)
.+.
T Consensus 89 ~l~ 91 (192)
T 1w8a_A 89 KIK 91 (192)
T ss_dssp CCC
T ss_pred cCC
Confidence 554
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=5.2e-10 Score=107.87 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccccc-ccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
.++++.|.+.++... .+....|..+++|++|++++|.+..+|.. +..+.+|++|++++|.+..+|+..+.++++|
T Consensus 27 ~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 27 PSSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 556666666665542 23334556667777777777766655543 4666777777777777776666544666777
Q ss_pred cEEeCCCCcccccchh-hcCCCCCceeeccCcccC
Q 003399 570 YTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITLP 603 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~ 603 (823)
++|++++|.+..+|.. +..+++|++|++++|.+.
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 7777777766666654 355677777777666543
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=7.3e-10 Score=108.40 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=59.6
Q ss_pred CcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeecc
Q 003399 520 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFG 598 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~ 598 (823)
+.|++|+|++|.+..+|..+..+.+|++|+|++|.|..+++..+.++.+|++|+|++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46777777777777777777777777777777777777766544777777777777777777653 46777777777777
Q ss_pred CcccC
Q 003399 599 SITLP 603 (823)
Q Consensus 599 ~~~~~ 603 (823)
+|.+.
T Consensus 111 ~N~l~ 115 (193)
T 2wfh_A 111 GNDIS 115 (193)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77654
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=9.5e-10 Score=107.58 Aligned_cols=122 Identities=25% Similarity=0.304 Sum_probs=93.1
Q ss_pred eEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc-hhhcCCCCCceeeccCcc
Q 003399 523 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSIT 601 (823)
Q Consensus 523 rvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 601 (823)
++++++++.+..+|..+. .+|++|++++|.|..+|..+ .++.+|++|+|++|.++.++ ..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998765 58999999999999999877 99999999999999999996 459999999999999998
Q ss_pred cCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHH-hhcCCCCCcEEEeecC
Q 003399 602 LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSK-SLCRLSCLESLKLANE 672 (823)
Q Consensus 602 ~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~ 672 (823)
+....... +..+++|+.|+++++. ...++. .+..+++|+.|++++|
T Consensus 90 l~~i~~~~----------------------f~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 90 LRCIPPRT----------------------FDGLKSLRLLSLHGND---ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCBCCTTT----------------------TTTCTTCCEEECCSSC---CCBCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHH----------------------hCCCCCCCEEECCCCC---CCeeChhhhhcCccccEEEeCCC
Confidence 76533223 4555566666665552 222222 3555666666666654
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.05 E-value=3.5e-10 Score=110.66 Aligned_cols=108 Identities=21% Similarity=0.243 Sum_probs=58.7
Q ss_pred CCCccEEEeecCCCCCCCccchH-HHhcCCCcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCC
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWE-KIYGMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 568 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~-~~~~~~~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 568 (823)
.++++.|.+.++.... +.. ..|..+++|++|+|++|.++.+ |..+..+.+|++|+|++|.+..+|+..+.++++
T Consensus 28 ~~~l~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 103 (192)
T 1w8a_A 28 PLHTTELLLNDNELGR----ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ 103 (192)
T ss_dssp CTTCSEEECCSCCCCS----BCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred CCCCCEEECCCCcCCc----cCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence 3455555555554321 111 2355556666666666665544 445556666666666666666555543355666
Q ss_pred ccEEeCCCCccccc-chhhcCCCCCceeeccCccc
Q 003399 569 LYTLDMPFSYIDHT-ADEFWKMNKLRHLNFGSITL 602 (823)
Q Consensus 569 L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 602 (823)
|++|+|++|.+..+ |..+..+++|++|++++|.+
T Consensus 104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66666666655554 44455566666666655544
No 141
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=4e-10 Score=121.92 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=143.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCC-----CCHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNE-----YDADQIVD 231 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~-----~~~~~~~~ 231 (823)
..++||+++++.+.+ +.. +++.|+|++|+|||||++++.+ +... ..+|+. +... .+...+..
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~--~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLD--LRKFEERNYISYKDFLL 79 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEE--GGGGTTCSCCCHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEE--chhhccccCCCHHHHHH
Confidence 689999999999998 643 5999999999999999999997 3332 257887 6532 34455554
Q ss_pred HHHHHhC-------------CC-CCC--c----cc-----ccCCHHHHHHHHHHHhcCCcEEEEEecCCChh-----hHH
Q 003399 232 IIIKFLM-------------PS-SRL--S----EI-----EDKNYEMKKIILHEYIMTKRYLIVIDDVWTIR-----MWD 281 (823)
Q Consensus 232 ~i~~~l~-------------~~-~~~--~----~~-----~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~-----~~~ 281 (823)
.+.+.+. .. ... + .. .......+...+.+.-+ ++++||+||++..+ +|.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 4444331 00 000 0 00 12234555555554433 49999999996532 232
Q ss_pred HHHhcCCCCCCCcEEEEeeCcchhh-------h--------c---c---cccCC----------CCCCCChhhhHHhHHH
Q 003399 282 VIREILPDNQNGSRVLITLTDIEMV-------T--------S---F---QLEDG----------ENIRLDLVPTGGPLRA 330 (823)
Q Consensus 282 ~l~~~~~~~~~gs~IivTTR~~~v~-------~--------~---~---~f~~~----------~~~~~~~~~~~~~i~~ 330 (823)
.+...+.+..++.++|+|+|..... . . + .|... ......... ...|+.
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~ 237 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYE 237 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHH
Confidence 2222222122467899999975421 0 0 0 00000 000000111 278899
Q ss_pred HcCCcceeeeeeccccc------ccccCCcCC----HHHHHHhcccC--CCCCCchhHhhhhcccCCCcccchhHHHHHH
Q 003399 331 TYKGWPFFILYHGSISL------EENIGEAVE----IPLVLRYFKYC--SLPFCLKPCFLYLSVFTAHLEISTRQLYQLW 398 (823)
Q Consensus 331 ~c~GlPLai~~~~~~~~------~~~~~~~~~----i~~~l~~~sy~--~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w 398 (823)
.|+|.|+++.......+ .......+. +...+..+.++ .||+..+..+..+|+-+ +...+....
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~-----~~~~l~~~~ 312 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSKCG-----KWSDVKRAL 312 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB-----CHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-----CHHHHHHHH
Confidence 99999998866211100 000000001 11122122222 57778888898888722 444444322
Q ss_pred H-hcCC-CCCChHHHHHHHHHHHHhcCceeeeecCCCCcEeeEE-cCcchHHHH
Q 003399 399 I-AEGF-IPDNSEATAESYLEQLIKEGFVEAKKRKAGGTINTCS-IPGCWRPVL 449 (823)
Q Consensus 399 ~-a~g~-i~~~~~~~~~~~~~~L~~~sll~~~~~~~~g~~~~~~-mHdlv~d~a 449 (823)
. ..|. + .......+++.|.+.+++.... ..|+ .|++++++.
T Consensus 313 ~~~~g~~~---~~~~~~~~L~~L~~~gli~~~~-------~~y~f~~~~~~~~l 356 (357)
T 2fna_A 313 ELEEGIEI---SDSEIYNYLTQLTKHSWIIKEG-------EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHCSCC---CHHHHHHHHHHHHHTTSEEESS-------SCEEESSHHHHHHT
T ss_pred HHhcCCCC---CHHHHHHHHHHHHhCCCEEecC-------CEEEecCHHHHHhh
Confidence 1 1231 1 1345678999999999998653 2355 567777653
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=2.4e-09 Score=102.70 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=60.6
Q ss_pred CcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeec
Q 003399 520 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 597 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 597 (823)
+.|++|+|++|.+..+ |..+.++.+|++|+|++|.|..+|+.++.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 6677777777777755 45677777777777777777777776556777777777777777777654 677777777777
Q ss_pred cCcccC
Q 003399 598 GSITLP 603 (823)
Q Consensus 598 ~~~~~~ 603 (823)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 777554
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.94 E-value=4.8e-09 Score=101.01 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=53.3
Q ss_pred CcceEEEccCCCCcccccc-ccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeec
Q 003399 520 KLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 597 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 597 (823)
+.|+.|+++++.+..+|.. ++.+.+|++|++++|.+..+|+..++++.+|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4666666666666655443 45666666666666666666665446666666666666666666543 456666666666
Q ss_pred cCcccC
Q 003399 598 GSITLP 603 (823)
Q Consensus 598 ~~~~~~ 603 (823)
++|.+.
T Consensus 108 ~~N~l~ 113 (177)
T 2o6r_A 108 DTNQLK 113 (177)
T ss_dssp CSSCCS
T ss_pred cCCcce
Confidence 666554
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=4.6e-09 Score=100.38 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=49.1
Q ss_pred CcceEEEccCCCCccc-cccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeec
Q 003399 520 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNF 597 (823)
Q Consensus 520 ~~LrvL~L~~~~l~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l 597 (823)
+.|++|+|++|.+..+ |..+..+.+|++|+|++|.|..+|+..+.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4556666666666544 44455666666666666666666655445666666666666666666543 555666666666
Q ss_pred cCccc
Q 003399 598 GSITL 602 (823)
Q Consensus 598 ~~~~~ 602 (823)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 66544
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=2e-10 Score=113.10 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=86.0
Q ss_pred ceEEEccCC--CCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCceeeccC
Q 003399 522 LRVLDLGSL--VLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLRHLNFGS 599 (823)
Q Consensus 522 LrvL~L~~~--~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 599 (823)
|+.+.+.++ .++.+|..++.+.+|++|++++|.+..+| .+ +++++|++|++++|.+..+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 344444443 34456668888999999999998888888 66 888999999999998888888788888899998888
Q ss_pred cccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHH--HhhcCCCCCcEEEeec
Q 003399 600 ITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLS--KSLCRLSCLESLKLAN 671 (823)
Q Consensus 600 ~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~--~~l~~l~~L~~L~l~~ 671 (823)
|.+.. ++. ++.+++|+.|+++++. ...++ ..+..+++|++|++++
T Consensus 103 N~l~~-----------------------l~~-~~~l~~L~~L~l~~N~---i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 103 NQIAS-----------------------LSG-IEKLVNLRVLYMSNNK---ITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EECCC-----------------------HHH-HHHHHHSSEEEESEEE---CCCHHHHHHHTTTTTCSEEEECS
T ss_pred CcCCc-----------------------CCc-cccCCCCCEEECCCCc---CCchhHHHHHhcCCCCCEEEecC
Confidence 87643 122 6667788888888773 22222 2455555555555553
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.86 E-value=8.3e-09 Score=98.95 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=72.7
Q ss_pred ceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccCc
Q 003399 522 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSI 600 (823)
Q Consensus 522 LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~ 600 (823)
-+.++++++.+..+|..+. .+|++|+|++|.|..+++..++++++|++|+|++|.+..+|.. +.++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3689999999999998775 8999999999999999765559999999999999999999876 589999999999999
Q ss_pred ccCC
Q 003399 601 TLPA 604 (823)
Q Consensus 601 ~~~~ 604 (823)
.+..
T Consensus 92 ~l~~ 95 (174)
T 2r9u_A 92 HLKS 95 (174)
T ss_dssp CCCC
T ss_pred ccce
Confidence 8764
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=7.3e-09 Score=98.97 Aligned_cols=103 Identities=19% Similarity=0.255 Sum_probs=84.6
Q ss_pred cceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccC
Q 003399 521 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGS 599 (823)
Q Consensus 521 ~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~ 599 (823)
..++|+++++.++.+|..+. .+|++|+|++|.|..+++..+.++.+|++|+|++|.+..+|.. +..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35789999999999998774 8999999999999999666559999999999999999999875 68999999999999
Q ss_pred cccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccc
Q 003399 600 ITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 600 ~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
|.+..... ..+..+++|+.|+++++.
T Consensus 88 N~l~~~~~----------------------~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPR----------------------GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCT----------------------TTTTTCTTCCEEECCSSC
T ss_pred CccCEeCH----------------------HHhcCCCCCCEEEeCCCC
Confidence 98765221 125566677777777663
No 148
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.82 E-value=6.7e-09 Score=113.54 Aligned_cols=264 Identities=14% Similarity=-0.002 Sum_probs=150.4
Q ss_pred CCeEeccccHHHHHHHHHc--CCCCeEEEEEEecCCchHHHHHHHHhCCcccccC--------cceeEEEeCCCCCCC-C
Q 003399 157 RDTVGLDDRMEELLDLLIE--GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY--------FDCHAWISEPYSNEY-D 225 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------F~~~~wv~~~vs~~~-~ 225 (823)
..++||+++++++.+++.. .....+.+.|+|++|+||||||+.+++ ..... ....+|+. .+... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~--~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVN--CREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEE--HHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEE--CccCCCC
Confidence 5899999999999988865 233456899999999999999999998 43222 23567777 66666 7
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChhh---HHH-HHhcCCCCCCCcEEEEeeC
Q 003399 226 ADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIRM---WDV-IREILPDNQNGSRVLITLT 301 (823)
Q Consensus 226 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~~---~~~-l~~~~~~~~~gs~IivTTR 301 (823)
...+...++.++.+.... ....+.......+.+.+..++.+|||||++.... .+. +...+... .+..||+||+
T Consensus 96 ~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVP--KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHHHCSCCC--SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCCCC--CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 888889999888432110 1233446677788888887777999999976532 222 22222222 6788999998
Q ss_pred cchhhh----------cc--------------cccC----CCCCCCChhhhHHhHHHHcC---Ccce-eeeeecccc---
Q 003399 302 DIEMVT----------SF--------------QLED----GENIRLDLVPTGGPLRATYK---GWPF-FILYHGSIS--- 346 (823)
Q Consensus 302 ~~~v~~----------~~--------------~f~~----~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~~--- 346 (823)
...... +. .+.. .-....--.+....+++.++ |.|- |+.+.+...
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 763211 10 1110 00001111234556667776 7664 333211000
Q ss_pred cccccCCcCCHH--------HHHHhcccCCCCCCchhHhhhhcccCCCcccchhHHHHHHHhcCCCCCChHHHHHHHHHH
Q 003399 347 LEENIGEAVEIP--------LVLRYFKYCSLPFCLKPCFLYLSVFTAHLEISTRQLYQLWIAEGFIPDNSEATAESYLEQ 418 (823)
Q Consensus 347 ~~~~~~~~~~i~--------~~l~~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 418 (823)
..-..-..+.+. ..+ ..++..|+++.+..+..++....+-.+. +......-..| ...........+++.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~~~~-~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~ 329 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQERL-IEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISE 329 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHH-HHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhcchH-HHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHH
Confidence 000001111122 233 4556778877666655555511101111 11112222233 222334567889999
Q ss_pred HHhcCceeeeec
Q 003399 419 LIKEGFVEAKKR 430 (823)
Q Consensus 419 L~~~sll~~~~~ 430 (823)
|..++++.....
T Consensus 330 L~~~gli~~~~~ 341 (384)
T 2qby_B 330 LDMFGIVKIRII 341 (384)
T ss_dssp HHHTTSEEEEEE
T ss_pred HHhCCCEEEEec
Confidence 999999987654
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.80 E-value=2.5e-07 Score=101.13 Aligned_cols=273 Identities=11% Similarity=0.067 Sum_probs=172.7
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
+..+.++.+-+.-. .+....|.++ .|+.+.|..+ +..++. .|.+ .+|+.+.+.. .+..++...|.+|.+|
T Consensus 112 ~~~l~~i~ip~~i~-----~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNSVK-----SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTTCC-----EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCccC-----EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 45556665544321 3344566665 6888888765 665544 3444 4688888876 6777777666888999
Q ss_pred cEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccccc
Q 003399 570 YTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSY 649 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~ 649 (823)
+.+++.++++..+|...-...+|+.+.+..+ +.... ...+.++++|+.+.+...-
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~----------------------~~aF~~~~~L~~l~l~~~l-- 237 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIG----------------------SQAFLKTSQLKTIEIPENV-- 237 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEEC----------------------TTTTTTCTTCCCEECCTTC--
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc-hheeh----------------------hhHhhCCCCCCEEecCCCc--
Confidence 9999988888888766444688888876543 21100 0115566667766665431
Q ss_pred chhhHH-HhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCC-----CCCcccccCCCCCCeEEeec
Q 003399 650 NQSLLS-KSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLM-----DDPMPTLEKLPLLQVLKLKQ 723 (823)
Q Consensus 650 ~~~~l~-~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~ 723 (823)
..+. ..+.+ .+|+.+.+.. +++.+.-..+..+++|+.+.+.++.+. ......+..|++|+.+.|.
T Consensus 238 --~~I~~~aF~~-~~L~~i~lp~-----~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 238 --STIGQEAFRE-SGITTVKLPN-----GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp --CEECTTTTTT-CCCSEEEEET-----TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred --cCcccccccc-CCccEEEeCC-----CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 1111 12333 5788888752 566665555567788888888877643 1234567889999999998
Q ss_pred CccCCccccccCCCCCcccEEeeecCCCCcceee-cccccccccEEEeecCCCCCCCc-hhccCCC-CCcEEEecCCCHH
Q 003399 724 NSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMP-EQLWCIK-SLNKFDCWWPQPE 800 (823)
Q Consensus 724 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~lp~L~~L~i~~C~~l~~lp-~~l~~l~-~L~~L~l~~c~~~ 800 (823)
+.... .-...+.++++|+.+.|.. ++..+.. .+..+ +|+.|.+.++. +..++ ..+..++ ++..|.+. ..
T Consensus 309 ~~i~~-I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp---~~ 380 (401)
T 4fdw_A 309 ESIRI-LGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVP---AE 380 (401)
T ss_dssp TTCCE-ECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEEC---GG
T ss_pred CceEE-EhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeC---HH
Confidence 33322 2234566789999999965 4666643 45567 99999999885 33343 3455663 78888864 44
Q ss_pred HHHHhcccCCcceeee
Q 003399 801 LRQKLREFEDKEQYGV 816 (823)
Q Consensus 801 ~~~~~~~~~~~~~~~i 816 (823)
..+.++.. ..|...
T Consensus 381 ~~~~y~~a--~~W~~f 394 (401)
T 4fdw_A 381 SVEKYKNA--NGWRDF 394 (401)
T ss_dssp GHHHHHHS--TTGGGG
T ss_pred HHHHhhhc--cchhhh
Confidence 55555543 335443
No 150
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.77 E-value=1.3e-08 Score=111.33 Aligned_cols=264 Identities=13% Similarity=0.043 Sum_probs=152.8
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCcccccC------cceeEEEeCCCCCCCCHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY------FDCHAWISEPYSNEYDADQ 228 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~vs~~~~~~~ 228 (823)
..++||+++++.+..++... ....+.+.|+|++|+||||+|+.+++ ..... --..+|+. .....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~--~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVN--ARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEE--TTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEE--CCcCCCHHH
Confidence 58999999999999988543 33467899999999999999999998 44222 12467788 788888889
Q ss_pred HHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCChhh----HHHHH---hcCCCC--CCCcEEE
Q 003399 229 IVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTIRM----WDVIR---EILPDN--QNGSRVL 297 (823)
Q Consensus 229 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~~~----~~~l~---~~~~~~--~~gs~Ii 297 (823)
+...++.+++.... ....+..+....+.+.+. +++.+|||||++.... .+.+. ...... ..+..+|
T Consensus 95 ~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 95 VASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 99999999976432 233445666777777774 4689999999986532 22232 222111 4456788
Q ss_pred EeeCcchhhh---------c----cccc------------CC-C---CCCCChhhhHHhHHHHcC---Ccc-eeeeeecc
Q 003399 298 ITLTDIEMVT---------S----FQLE------------DG-E---NIRLDLVPTGGPLRATYK---GWP-FFILYHGS 344 (823)
Q Consensus 298 vTTR~~~v~~---------~----~~f~------------~~-~---~~~~~~~~~~~~i~~~c~---GlP-Lai~~~~~ 344 (823)
.||+...... + +.|. .. . ....--.+..+.+++.++ |.| .|+.+.+.
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 8887763321 1 0000 00 0 000111234456666666 877 33322110
Q ss_pred ccc-----ccccCCcCCHH--------HHHHhcccCCCCCCchhHhhhhc-ccCCCcccchhHHHHHH----HhcCCCCC
Q 003399 345 ISL-----EENIGEAVEIP--------LVLRYFKYCSLPFCLKPCFLYLS-VFTAHLEISTRQLYQLW----IAEGFIPD 406 (823)
Q Consensus 345 ~~~-----~~~~~~~~~i~--------~~l~~~sy~~L~~~~k~cfl~~s-~fp~~~~i~~~~li~~w----~a~g~i~~ 406 (823)
... .-.....+.+. ..+ .-++..||.+.+..++.++ ++-....+...++.+.. -..| ...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~-~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIERDRV-SEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH 329 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHHHHHH-HHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHhhchH-HHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC
Confidence 000 00000111122 223 4455778877776655555 33222244444333322 2233 222
Q ss_pred ChHHHHHHHHHHHHhcCceeeee
Q 003399 407 NSEATAESYLEQLIKEGFVEAKK 429 (823)
Q Consensus 407 ~~~~~~~~~~~~L~~~sll~~~~ 429 (823)
........+++.|...+++....
T Consensus 330 ~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 330 VTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCeEEEe
Confidence 34566788999999999999864
No 151
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.74 E-value=4.5e-08 Score=107.11 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=156.9
Q ss_pred CCeEeccccHHHHHHHHHcC----CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc-ceeEEEeCCCCCCCCHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG----PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF-DCHAWISEPYSNEYDADQIVD 231 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~vs~~~~~~~~~~ 231 (823)
+.++||+++++.+..++... .+..+.+.|+|.+|+||||||+.+++ ...... ..++|+. .+...+...+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~--~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYIN--GFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEE--TTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEe--CccCCCHHHHHH
Confidence 57999999999999988762 22334899999999999999999997 443331 2567788 778888889999
Q ss_pred HHHHHhCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCCh--hhHHHHHhcCCCCC----CCcEEEEeeCcc
Q 003399 232 IIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTI--RMWDVIREILPDNQ----NGSRVLITLTDI 303 (823)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~--~~~~~l~~~~~~~~----~gs~IivTTR~~ 303 (823)
.++..++.... ....+..+....+.+.+. +++.+||||+++.. .....+...+.... .+..||+||+..
T Consensus 93 ~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 93 EIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 99998865432 123345666666666664 56899999999764 45556655554321 467888888876
Q ss_pred hhhhc-------------ccccC------------C----CCCCCChhhhHHhHHHHc---------CCcceee-eeecc
Q 003399 304 EMVTS-------------FQLED------------G----ENIRLDLVPTGGPLRATY---------KGWPFFI-LYHGS 344 (823)
Q Consensus 304 ~v~~~-------------~~f~~------------~----~~~~~~~~~~~~~i~~~c---------~GlPLai-~~~~~ 344 (823)
..... +.|.. . .....--.+....+++.+ +|.|-.+ .....
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 43320 00100 0 000111234556777787 6765322 22110
Q ss_pred ccc-----ccccCCcCCHHHHHH-------hcccCCCCCCchhHhhhhcccC---CCcccchhHHHHHHHh----cCCCC
Q 003399 345 ISL-----EENIGEAVEIPLVLR-------YFKYCSLPFCLKPCFLYLSVFT---AHLEISTRQLYQLWIA----EGFIP 405 (823)
Q Consensus 345 ~~~-----~~~~~~~~~i~~~l~-------~~sy~~L~~~~k~cfl~~s~fp---~~~~i~~~~li~~w~a----~g~i~ 405 (823)
... .......+.+..++. .-.+..||.+.+..+..++.+. .+-.+....+...+.. .|..
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~- 328 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER- 328 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC-
Confidence 000 000001112222220 1113456766776666666554 2224555555554433 2321
Q ss_pred CChHHHHHHHHHHHHhcCceeeeec
Q 003399 406 DNSEATAESYLEQLIKEGFVEAKKR 430 (823)
Q Consensus 406 ~~~~~~~~~~~~~L~~~sll~~~~~ 430 (823)
.-.......++++|..++++.....
T Consensus 329 ~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 329 PRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeee
Confidence 1123456789999999999998654
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.71 E-value=7.4e-09 Score=113.20 Aligned_cols=142 Identities=13% Similarity=0.130 Sum_probs=96.6
Q ss_pred CCeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCcccccCc---ceeEEEeCCCCCCCCHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF---DCHAWISEPYSNEYDADQIVD 231 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~vs~~~~~~~~~~ 231 (823)
..++||+++++.+.+++... ......+.|+|++|+||||||+.+++ .....| ...+|+. .....+...+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~--~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYIN--TRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEE--HHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEE--CCCCCCHHHHHH
Confidence 68999999999999988752 33467899999999999999999998 444432 2466777 666667778888
Q ss_pred HHHHHhCCCCCCcccccCCHHHHHHHHHHHhc--CCcEEEEEecCCCh------hhHHHHHhcCCC-CCCCcEEEEeeCc
Q 003399 232 IIIKFLMPSSRLSEIEDKNYEMKKIILHEYIM--TKRYLIVIDDVWTI------RMWDVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdvw~~------~~~~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
.++.+++.... ....+..+....+.+.+. +++.+||+|+++.. +.+..+...+.. ...+..+|+||+.
T Consensus 96 ~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 96 DLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88887755322 123345566666766665 45899999999753 233344333211 2335677888887
Q ss_pred chh
Q 003399 303 IEM 305 (823)
Q Consensus 303 ~~v 305 (823)
...
T Consensus 173 ~~~ 175 (386)
T 2qby_A 173 VKF 175 (386)
T ss_dssp GGG
T ss_pred CCh
Confidence 643
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=6.4e-08 Score=103.25 Aligned_cols=261 Identities=13% Similarity=-0.009 Sum_probs=156.9
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccC--------ccccceeeccCCCCcccchhh
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIEN--------LFLLRYLKLNIPSLKSLPSSL 562 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~--------L~~Lr~L~L~~~~i~~lp~~i 562 (823)
+++|++|.+.++.... .... ...++.++.+.+..+.+. +..|.+ +.+|+.|.|+. .++.+++..
T Consensus 48 l~~L~~LdLs~n~i~~--~~~~---~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM--YSGK---AGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECC--EEES---SSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEE--ecCc---cccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 5788888888765421 0000 112222445555444322 123445 88888888888 788888777
Q ss_pred hhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCccc----CCCCCCCcCCCcccc-eeeccCCCccccc----cc
Q 003399 563 LSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITL----PAHPGKYCGSLENLN-FISALHPCCCTED----IL 632 (823)
Q Consensus 563 ~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~----~~~~~~~i~~L~~L~-~l~~~~~~~~~~~----~l 632 (823)
|.+|.+|+.|++.++.+..++. .+..+.++..+.+..... .......+.++..|+ .+.+... ..+++ .-
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~-~~l~~~~~~~~ 198 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAG 198 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT-CCHHHHHHHTT
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC-CcHHHHHhhcc
Confidence 6888888888888887777754 466777777775544211 000000122233333 1111111 11111 01
Q ss_pred CCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccC
Q 003399 633 GRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEK 712 (823)
Q Consensus 633 ~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 712 (823)
-...++..+.+.+.- ....+......+++|+.|++..+ +++.+.-..+..+++|+.|+|.++ +.......+.+
T Consensus 199 ~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n----~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~ 271 (329)
T 3sb4_A 199 LQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKT----NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN 271 (329)
T ss_dssp CCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTB----CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCC----CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC
Confidence 235566777776653 22222222234789999998743 477776666677889999999887 55555667889
Q ss_pred CCCCC-eEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee-cccccccccEEEe
Q 003399 713 LPLLQ-VLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLII 770 (823)
Q Consensus 713 l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~lp~L~~L~i 770 (823)
+++|+ .+.+.+ .... .-...+.++++|+.|.+.++ .+..++. .+..+++|+.|+.
T Consensus 272 ~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 99999 999985 3322 22456778999999999765 5677754 4667888888753
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=1.1e-06 Score=96.04 Aligned_cols=239 Identities=13% Similarity=0.154 Sum_probs=160.4
Q ss_pred cCCCcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc-hhhcCCCCCce
Q 003399 517 GMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKMNKLRH 594 (823)
Q Consensus 517 ~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~ 594 (823)
..+..+..+.+-.. ++.++. .+.++ +|+.+.+..+ +..++...|.+ .+|+.+.+.. ++..++ ..+..+++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 44456666666543 444433 34453 7888888765 77787776566 4799999876 677775 45888899999
Q ss_pred eeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCC
Q 003399 595 LNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESK 674 (823)
Q Consensus 595 L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 674 (823)
++++.|.+..... ..+. +.+|+.+.+...- ..--...|.++++|+.+.+..
T Consensus 185 l~l~~n~l~~I~~----------------------~aF~-~~~L~~l~lp~~l---~~I~~~aF~~~~~L~~l~l~~--- 235 (401)
T 4fdw_A 185 ADLSKTKITKLPA----------------------STFV-YAGIEEVLLPVTL---KEIGSQAFLKTSQLKTIEIPE--- 235 (401)
T ss_dssp EECTTSCCSEECT----------------------TTTT-TCCCSEEECCTTC---CEECTTTTTTCTTCCCEECCT---
T ss_pred eecCCCcceEech----------------------hhEe-ecccCEEEeCCch---heehhhHhhCCCCCCEEecCC---
Confidence 9887765432110 1122 4567777665331 111123677889999999863
Q ss_pred CCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCC----ccccccCCCCCcccEEeeecCC
Q 003399 675 MPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSG----RKLTCGSYGFPNLKVLHLKSML 750 (823)
Q Consensus 675 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~ 750 (823)
+++.+.-..+.. .+|+.+.|.++ +.......+..+++|+.+.+.++.... ..-...+.++++|+.+.|.+
T Consensus 236 --~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 236 --NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp --TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--
T ss_pred --CccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--
Confidence 566665444444 68999999554 344445678899999999998765431 12234567889999999984
Q ss_pred CCcceee-cccccccccEEEeecCCCCCCCch-hccCCCCCcEEEecCCC
Q 003399 751 WLEEWTM-GNAAMPKLECLIINPCAYLKKMPE-QLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 751 ~l~~~~~-~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L~~L~l~~c~ 798 (823)
.++.++. .+..+++|+.+.+... ++.++. .+.++ +|+.|.+.+..
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 4777753 4567899999999543 666654 67888 99999998764
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=110.31 Aligned_cols=112 Identities=16% Similarity=0.091 Sum_probs=52.6
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhc-CCCcceEEEccCCCCcc--ccccccCccccceeeccCCCCcccchhhh----
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYG-MFKLLRVLDLGSLVLIQ--YPSGIENLFLLRYLKLNIPSLKSLPSSLL---- 563 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~-~~~~LrvL~L~~~~l~~--lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~---- 563 (823)
.+.+++|.+.++.........+...+. ..+.|+.|+|++|.+.. +..-...+.+|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 455556665555432100111112222 22566666666666541 11112234556666666666543222111
Q ss_pred -hcCCCccEEeCCCCcccc-----cchhhcCCCCCceeeccCccc
Q 003399 564 -SNLLNLYTLDMPFSYIDH-----TADEFWKMNKLRHLNFGSITL 602 (823)
Q Consensus 564 -~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~ 602 (823)
....+|++|+|++|.+.. ++..+..+++|++|+|++|.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 124556666666665542 334445566666666666544
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1e-07 Score=102.47 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=70.5
Q ss_pred hcCCCcceEEEccC-CCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccchhhcCCCCCc
Q 003399 516 YGMFKLLRVLDLGS-LVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTADEFWKMNKLR 593 (823)
Q Consensus 516 ~~~~~~LrvL~L~~-~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 593 (823)
+..+++|+.|+|++ |.+..+| ..|+.|.+|++|+|++|.|..+|+..|++|.+|+.|+|++|.|..+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 77888888888886 8888776 568888888899998888888877655888888889998888888876654444488
Q ss_pred eeeccCcccC
Q 003399 594 HLNFGSITLP 603 (823)
Q Consensus 594 ~L~l~~~~~~ 603 (823)
.|+|.+|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 8888887665
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=2.9e-07 Score=98.95 Aligned_cols=97 Identities=21% Similarity=0.076 Sum_probs=79.2
Q ss_pred EEEccCC-CCccccccccCccccceeeccC-CCCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCc
Q 003399 524 VLDLGSL-VLIQYPSGIENLFLLRYLKLNI-PSLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSI 600 (823)
Q Consensus 524 vL~L~~~-~l~~lp~~i~~L~~Lr~L~L~~-~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 600 (823)
.++++++ .+..+|. +..+.+|++|+|++ |.|..+|+..|++|.+|+.|+|++|.|..+|. .|.+|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 99999997655999999999999999999865 6899999999999999
Q ss_pred ccCCCCCCCcCCCcccceeecc
Q 003399 601 TLPAHPGKYCGSLENLNFISAL 622 (823)
Q Consensus 601 ~~~~~~~~~i~~L~~L~~l~~~ 622 (823)
.+.......+..+. |+.+.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECC
T ss_pred ccceeCHHHcccCC-ceEEEee
Confidence 88753222333333 5555554
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=6.8e-09 Score=112.44 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=75.9
Q ss_pred CCcceEEEccCCCCcc-----ccccccC-ccccceeeccCCCCccc-chhhhhcCCCccEEeCCCCcccccc-h----hh
Q 003399 519 FKLLRVLDLGSLVLIQ-----YPSGIEN-LFLLRYLKLNIPSLKSL-PSSLLSNLLNLYTLDMPFSYIDHTA-D----EF 586 (823)
Q Consensus 519 ~~~LrvL~L~~~~l~~-----lp~~i~~-L~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp-~----~i 586 (823)
++.|+.|+|++|.+.. +...+.. ..+|++|+|++|.+... ...+...+.+|+.|+|++|.+.... . .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4668888888888762 2222222 26788888888877632 2223245667888888888775432 2 22
Q ss_pred -cCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeecccc--cchhhHHHhhcCCCC
Q 003399 587 -WKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDLS--YNQSLLSKSLCRLSC 663 (823)
Q Consensus 587 -~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~~--~~~~~l~~~l~~l~~ 663 (823)
...++|++|+|++|.+.... ...+...+..+++|+.|++++|.- .....++..+...++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~------------------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAG------------------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHH------------------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred HhcCCccceeeCCCCCCChHH------------------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 24577888888777653200 011222245666777777777641 112334445555455
Q ss_pred CcEEEeec
Q 003399 664 LESLKLAN 671 (823)
Q Consensus 664 L~~L~l~~ 671 (823)
|+.|+|++
T Consensus 213 L~~L~Ls~ 220 (372)
T 3un9_A 213 LQELNVAY 220 (372)
T ss_dssp CCEEECCS
T ss_pred cCeEECCC
Confidence 55555543
No 159
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.48 E-value=1.4e-07 Score=94.14 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=78.1
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccC-cc-eeEEEeCCCCCCCCHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY-FD-CHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
.+++|+++.++.+.+++.... ...+.|+|.+|+||||+|+.+++ ..... +. ..+.+. .+...+...+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMN--ASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEE--TTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEec--cccccChHHHHHHHH
Confidence 578999999999999998764 33489999999999999999987 33222 22 233444 444333333222221
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
....... .-.+++.+||+||++.. ..++.+...+.....+.++|+||+...
T Consensus 91 ~~~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 91 EFARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HHHTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHhcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1111100 01257899999999764 345555555544456788999987653
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.48 E-value=3.9e-06 Score=91.75 Aligned_cols=281 Identities=13% Similarity=0.067 Sum_probs=142.7
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCC----------------
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIP---------------- 553 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~---------------- 553 (823)
|.+|+++.+...- ..+....|.+|++|+.++|..+ ++.++ ..+..+..|+.+.+..+
T Consensus 70 c~~L~~i~lp~~i-----~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 70 CRKVTEIKIPSTV-----REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp CTTEEEEECCTTC-----CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred CCCceEEEeCCCc-----cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 6777777774321 2344567788888888887543 44333 23455556665554332
Q ss_pred -----CCcccchhhhhcCCCccEEeCCCCcccccch-hhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcc
Q 003399 554 -----SLKSLPSSLLSNLLNLYTLDMPFSYIDHTAD-EFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCC 627 (823)
Q Consensus 554 -----~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~ 627 (823)
.+..+....|.++.+|+.+.+.++ +..++. .+..+.+|+.+++..+ +.......+.++..|+.+........
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 111122222355666666666443 333432 3555666666655443 11100112333344444433322222
Q ss_pred cccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCc
Q 003399 628 TEDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPM 707 (823)
Q Consensus 628 ~~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~ 707 (823)
+.+......+|+.+.+..... ..-...+..+..|+.+.+.. ++..+.-..+..+..++.+.+....+. -
T Consensus 222 i~~~~~~~~~l~~i~ip~~~~---~i~~~~f~~~~~l~~~~~~~-----~~~~i~~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSFT---ELGKSVFYGCTDLESISIQN-----NKLRIGGSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTCC---EECSSTTTTCSSCCEEEECC-----TTCEECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred eehhhcccCCCceEEECCCce---ecccccccccccceeEEcCC-----CcceeeccccccccccceeccCceeec---c
Confidence 222233344555555543210 00012344556666666542 233333333344566666665544321 2
Q ss_pred ccccCCCCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCccee-ecccccccccEEEeecCCCCCCCch-hccC
Q 003399 708 PTLEKLPLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPE-QLWC 785 (823)
Q Consensus 708 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~lp~L~~L~i~~C~~l~~lp~-~l~~ 785 (823)
..+..+++|+.+.+..+ ... .-...+.++.+|+.+.|.+ .++.+. ..+..+.+|+.+.+... ++.++. .+.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 364 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKF-IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG 364 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCE-ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred ccccccccccccccccc-cce-echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence 34567778888887632 211 1123456677888888864 355563 23556778888877543 565544 5778
Q ss_pred CCCCcEEEecC
Q 003399 786 IKSLNKFDCWW 796 (823)
Q Consensus 786 l~~L~~L~l~~ 796 (823)
+++|+.+.+..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 88888888754
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.42 E-value=5.6e-07 Score=91.04 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=76.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.+++||+..++.+..++..+. ....+.|+|.+|+||||||+.+++ .....+... .......... ..+...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~------~~~~~~~~~~-~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGIT------ATPCGVCDNC-REIEQG 92 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSC------SSCCSCSHHH-HHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCC------CCCCcccHHH-HHHhcc
Confidence 579999999999999997653 235889999999999999999987 333222100 0000000000 011000
Q ss_pred hCCCC-CCcccccCCHHHHHHHHHHHh-----cCCcEEEEEecCCC--hhhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 237 LMPSS-RLSEIEDKNYEMKKIILHEYI-----MTKRYLIVIDDVWT--IRMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 237 l~~~~-~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdvw~--~~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
..... ..........+. ...+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp CCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00000 000000011111 22222222 34689999999965 4567777666655556788999987654
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=2.1e-07 Score=99.93 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=106.1
Q ss_pred cCCCCccceEEeeccccc-------chhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCC
Q 003399 632 LGRLPNLRNLRIQGDLSY-------NQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMD 704 (823)
Q Consensus 632 l~~l~~L~~L~i~~~~~~-------~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~ 704 (823)
+..+++|+.|.|...... ....+...+..+++|+.|.|.++. .+ .+.. ...++|++|+|..|.+..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~---~l---~l~~-~~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---NL---SIGK-KPRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB---TC---BCCS-CBCTTCSEEEEECSBCCH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC---Cc---eecc-ccCCCCcEEEEecCCCCh
Confidence 456789999988654210 112456677788899999998642 11 1111 126899999999998766
Q ss_pred CCccccc--CCCCCCeEEeecC--ccCCc----cc--cccCCCCCcccEEeeecCCCCccee---ecccccccccEEEee
Q 003399 705 DPMPTLE--KLPLLQVLKLKQN--SYSGR----KL--TCGSYGFPNLKVLHLKSMLWLEEWT---MGNAAMPKLECLIIN 771 (823)
Q Consensus 705 ~~~~~l~--~l~~L~~L~L~~~--~~~~~----~~--~~~~~~~~~L~~L~L~~~~~l~~~~---~~~~~lp~L~~L~i~ 771 (823)
.....++ .+|+|+.|.|+.+ .+.+. .+ ......||+|+.|.|.+|......+ .....+|+|++|+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 5555555 7999999999632 22221 11 1122469999999999876432221 122468999999998
Q ss_pred cCCCCCC-----CchhccCCCCCcEEEecCCC
Q 003399 772 PCAYLKK-----MPEQLWCIKSLNKFDCWWPQ 798 (823)
Q Consensus 772 ~C~~l~~-----lp~~l~~l~~L~~L~l~~c~ 798 (823)
.|. ++. ++.++.++++|+.|++++|.
T Consensus 288 ~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 288 AGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 765 543 45566788999999999886
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=9.6e-07 Score=93.72 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=76.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc-Ccc-eeEEEeCCCCCCCCHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH-YFD-CHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
.+++|++..++.+.+++..+. ...+.|+|++|+||||+|+.+++ .+.. .+. ..+++. .+.......+ ++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~--~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELN--ASDDRGIDVV-RNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEEC--TTSCCSHHHH-HTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEec--CccccChHHH-HHHH
Confidence 579999999999999998764 33389999999999999999997 4322 222 244455 4443332222 2222
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHHh-cCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEYI-MTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
..+.... ..+ .+++.+||+||++.. ..++.+...+.....++++|+||+...
T Consensus 94 ~~~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 94 KHFAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HHHHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 2221000 011 356899999999864 344545444444445788888887643
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=8.6e-07 Score=83.52 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=54.8
Q ss_pred CccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccccccCCC----CCcccEEeeecCCCCccee-ecccccccc
Q 003399 691 SLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKLTCGSYG----FPNLKVLHLKSMLWLEEWT-MGNAAMPKL 765 (823)
Q Consensus 691 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~l~~~~-~~~~~lp~L 765 (823)
+|++|++++|.++...+..+..+++|+.|+|++|....+.-...+.. .++|+.|+|++|++++.-. ..+..+|+|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 57788888887777777777778888888888775332221122222 2467777777776655321 123456777
Q ss_pred cEEEeecCCCCCC
Q 003399 766 ECLIINPCAYLKK 778 (823)
Q Consensus 766 ~~L~i~~C~~l~~ 778 (823)
++|++++|+.++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 7777777776664
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.17 E-value=5.5e-07 Score=96.63 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=16.2
Q ss_pred CCCCCeEEeecCccCCcc---ccccCCCCCcccEEeeecC
Q 003399 713 LPLLQVLKLKQNSYSGRK---LTCGSYGFPNLKVLHLKSM 749 (823)
Q Consensus 713 l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~L~~~ 749 (823)
+|+|+.|+|+.|.+.+.. +...+..+++|+.|+|++|
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 455555555544433211 1111123455555555554
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=4.9e-05 Score=82.97 Aligned_cols=267 Identities=11% Similarity=0.101 Sum_probs=144.1
Q ss_pred hHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcccccc-hhhcCC
Q 003399 512 WEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYIDHTA-DEFWKM 589 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L 589 (823)
-...|.+|++|+.+.|.. .++.++ ..+.++.+|+.+++..+ ++.++...+.++.+|+.+.+..+ +..+. ..+..+
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 346789999999999974 366664 45788999999999764 77777766688888888776543 22222 122222
Q ss_pred CCCceeeccCcccCCCCCCCcCCCcccceeeccCCCccc-ccccCCCCccceEEeecccccchhhHHHhhcCCCCCcEEE
Q 003399 590 NKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCT-EDILGRLPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLK 668 (823)
Q Consensus 590 ~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~-~~~l~~l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~ 668 (823)
..+.......... .....+.++..|+.+.+......+ ...+.++.+|+.+.+...-.. --...+.++..|+.+.
T Consensus 140 ~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~---I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 140 DFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKI---IRDYCFAECILLENME 214 (394)
T ss_dssp CCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCE---ECTTTTTTCTTCCBCC
T ss_pred cccccccCccccc--cchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCCceE---eCchhhccccccceee
Confidence 2222211111000 000022333444444433221111 111344445554444322100 0011223333333333
Q ss_pred eecCC--------CCCCC---------cEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCCCeEEeecCccCCccc
Q 003399 669 LANES--------KMPRL---------SKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLLQVLKLKQNSYSGRKL 731 (823)
Q Consensus 669 l~~~~--------~~~~L---------~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 731 (823)
+..+. ...++ ..+.-..+..+.+|+.+.+..+.. ......+..++.|+.+.+......
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---- 289 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---- 289 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC----
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec----
Confidence 32210 11223 333222235567788888766532 233445667888888877643221
Q ss_pred cccCCCCCcccEEeeecCCCCcceee-cccccccccEEEeecCCCCCCCch-hccCCCCCcEEEec
Q 003399 732 TCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPE-QLWCIKSLNKFDCW 795 (823)
Q Consensus 732 ~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L~~L~l~ 795 (823)
...+..+.+|+.+.+.+ .++.+.. .+..+++|+.+.|.+ .++.++. .+.++++|+.+.+.
T Consensus 290 ~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 22356788999999875 4666643 356788999998853 3666654 67889999999874
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.08 E-value=3.9e-06 Score=81.28 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=38.9
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++||++.++.+.+.+.... .+.+.|+|.+|+||||+|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 679999999999999987643 45678999999999999999987
No 168
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.05 E-value=9.5e-06 Score=84.52 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=76.9
Q ss_pred CeEeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhCCccccc--------CcceeEEEeCCCCCCCCHH
Q 003399 158 DTVGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH--------YFDCHAWISEPYSNEYDAD 227 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~wv~~~vs~~~~~~ 227 (823)
.+.||++++++|...|... ......+-|+|.+|.|||++|++|.+. ... .| ..+.|. .....+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~-~~v~IN--c~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIF-DYIHID--ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCE-EEEEEE--TTCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCce-EEEEEe--ccccCCHH
Confidence 4889999999999888653 335678899999999999999999983 322 23 345666 66667888
Q ss_pred HHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHh---cCCcEEEEEecCCCh
Q 003399 228 QIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYI---MTKRYLIVIDDVWTI 277 (823)
Q Consensus 228 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdvw~~ 277 (823)
.+...|++++.+... ......+.+.. +.+.+ +++++++|||+++..
T Consensus 96 ~~~~~I~~~L~g~~~---~~~~~~~~L~~-~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 96 ALYEKIWFAISKENL---CGDISLEALNF-YITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHHSCCC-----CCCCHHHHHH-HHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHHhcCCCC---CchHHHHHHHH-HHHHhhhccCCceEEEEecHHHh
Confidence 999999999976432 11122233333 33333 457899999999764
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.02 E-value=1.1e-06 Score=93.40 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=38.0
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|++..++.+..++... ......|.|+|.+|+||||+|+++++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 68999999999988887631 22346788999999999999999987
No 170
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=3e-06 Score=90.04 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=75.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccC-cc-eeEEEeCCCCCCCCHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHY-FD-CHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~-~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
.+++|+++.++.+.+++..+. ...+.++|.+|+||||+|+.+++ .+... +. ..+.+. .+.......+ ...+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELN--ASDERGINVI-REKV 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEE--TTCHHHHHTT-HHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEee--ccccCchHHH-HHHH
Confidence 579999999999999998764 34489999999999999999998 33221 11 233344 3321111111 1111
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
....... ....+++.++|+||++.. ..++.+...+.....++++|+||....
T Consensus 98 ~~~~~~~------------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 98 KEFARTK------------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp HHHHHSC------------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHhhC------------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 1100000 011257889999999764 455666555544456788999887653
No 171
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=3.9e-06 Score=81.01 Aligned_cols=117 Identities=12% Similarity=0.083 Sum_probs=83.3
Q ss_pred hHHHhcCCCcceEEEccCC-CCc-----cccccccCccccceeeccCCCCcc-----cchhhhhcCCCccEEeCCCCccc
Q 003399 512 WEKIYGMFKLLRVLDLGSL-VLI-----QYPSGIENLFLLRYLKLNIPSLKS-----LPSSLLSNLLNLYTLDMPFSYID 580 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~-~l~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~ 580 (823)
+...+...+.|+.|+|++| .+. .+...+....+|++|+|++|.|.. +...+ ...++|++|+|++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCC
Confidence 4567788899999999998 775 355667777889999999998763 44444 66788999999998776
Q ss_pred c-----cchhhcCCCCCceeec--cCcccCCCCCCCcCCCcccceeeccCCCcccccccCCCCccceEEeeccc
Q 003399 581 H-----TADEFWKMNKLRHLNF--GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIQGDL 647 (823)
Q Consensus 581 ~-----lp~~i~~L~~L~~L~l--~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~i~~~~ 647 (823)
. +...+...++|++|++ ++|.+.... ...+.+.+...++|+.|+++++.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g------------------~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNV------------------EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH------------------HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH------------------HHHHHHHHHhCCCcCEEeccCCC
Confidence 4 4566777888999988 667654210 11122335566778888887774
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=5e-06 Score=80.22 Aligned_cols=112 Identities=10% Similarity=0.004 Sum_probs=85.9
Q ss_pred CCCccEEEeecC-CCCCCCccchHHHhcCCCcceEEEccCCCCc-----cccccccCccccceeeccCCCCcc-----cc
Q 003399 491 DSQLHSFLCCSP-ESRHIDPIDWEKIYGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKS-----LP 559 (823)
Q Consensus 491 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp 559 (823)
.+.|++|.+.++ .........+...+...+.|++|+|++|.+. .+...+.....|++|+|++|.|.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 688999999877 5432111234566788899999999999986 355666677899999999999884 55
Q ss_pred hhhhhcCCCccEEeC--CCCcccc-----cchhhcCCCCCceeeccCcccC
Q 003399 560 SSLLSNLLNLYTLDM--PFSYIDH-----TADEFWKMNKLRHLNFGSITLP 603 (823)
Q Consensus 560 ~~i~~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~ 603 (823)
..+ ...++|++|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 555 77889999999 7787763 4556777899999999988653
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.94 E-value=0.00032 Score=76.36 Aligned_cols=285 Identities=12% Similarity=0.042 Sum_probs=164.7
Q ss_pred CccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCC---Ccccc-ccccCccccceeeccCCCCcccchhhhhcCCC
Q 003399 493 QLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLV---LIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLN 568 (823)
Q Consensus 493 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~---l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 568 (823)
.|+++.+-..- ..+-...|.+|++|+.+.+..+. ++.+. ..+..+..|+.+.+..+ +..++...+..+.+
T Consensus 65 ~L~sI~iP~sv-----t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDTV-----TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTTC-----CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTT
T ss_pred cCEEEEECCCe-----eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcc
Confidence 47888775432 23455789999999999997652 55553 34667888888887654 66777766688999
Q ss_pred ccEEeCCCCcccccc-hhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCCcc-cccccCCCCccceEEeecc
Q 003399 569 LYTLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPCCC-TEDILGRLPNLRNLRIQGD 646 (823)
Q Consensus 569 L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~~~-~~~~l~~l~~L~~L~i~~~ 646 (823)
|+.+.+... +..++ ..+..+.+|+.+.+..+ +.......+. ...|..+.+...... -...+..+.+|........
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCS
T ss_pred cccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceeccccc
Confidence 999999654 45554 34778888998877653 1111111111 123444444322111 1122556666665554332
Q ss_pred cccchhhHH-----------HhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCC
Q 003399 647 LSYNQSLLS-----------KSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPL 715 (823)
Q Consensus 647 ~~~~~~~l~-----------~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~ 715 (823)
......... ........+..+.+ +..+..+.-..+..+.+|+.+.+.... .......+.++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----p~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~ 289 (394)
T 4gt6_A 216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI-----PNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPA 289 (394)
T ss_dssp SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC-----CTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTT
T ss_pred ccccccceeecccccccccccccccccccceEEc-----CCcceEcccceeeecccccEEeccccc-ceecCcccccccc
Confidence 100000000 00001112222221 123333332333556778888776543 2223345677888
Q ss_pred CCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee-cccccccccEEEeecCCCCCCCch-hccCCCCCcEEE
Q 003399 716 LQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLIINPCAYLKKMPE-QLWCIKSLNKFD 793 (823)
Q Consensus 716 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~lp~L~~L~i~~C~~l~~lp~-~l~~l~~L~~L~ 793 (823)
|+.+.+. +.... .-...+.++.+|+.+.|.. .++.+.. .+..+.+|+.+.|-. .++.++. .+.+|++|+.+.
T Consensus 290 L~~i~l~-~~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 290 LQDIEFS-SRITE-LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CCEEECC-TTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEE
T ss_pred cccccCC-Ccccc-cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEE
Confidence 9988886 22221 1233456788999999874 4666643 456788999999853 3666654 688999999999
Q ss_pred ecCCC
Q 003399 794 CWWPQ 798 (823)
Q Consensus 794 l~~c~ 798 (823)
+.+..
T Consensus 364 ~~~~~ 368 (394)
T 4gt6_A 364 YSGSR 368 (394)
T ss_dssp ESSCH
T ss_pred ECCce
Confidence 98765
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=1.9e-05 Score=74.36 Aligned_cols=84 Identities=10% Similarity=0.050 Sum_probs=65.3
Q ss_pred CCCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee-cccc----cccccEEEeecCCCCCCC-chhccCCC
Q 003399 714 PLLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAA----MPKLECLIINPCAYLKKM-PEQLWCIK 787 (823)
Q Consensus 714 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~----lp~L~~L~i~~C~~l~~l-p~~l~~l~ 787 (823)
.+|+.|++++|.++...+. .+.++++|+.|+|++|..++.... .+.. .++|++|+|++|+.++.- -..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4799999999987765443 357899999999999988764421 1222 468999999999988731 12467899
Q ss_pred CCcEEEecCCC
Q 003399 788 SLNKFDCWWPQ 798 (823)
Q Consensus 788 ~L~~L~l~~c~ 798 (823)
+|+.|++++||
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999998
No 175
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.78 E-value=2.6e-05 Score=74.79 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=55.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccc--cCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVK--HYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
-..+.|+|..|+||||||+.+++ ... ..+ .+++++ ..++...+......... ....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~-~~~~~~--------~~~~~~~~~~~~~~~~~---------~~~~-- 95 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK--AIYEKKGI-RGYFFD--------TKDLIFRLKHLMDEGKD---------TKFL-- 95 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH--HHHHHSCC-CCCEEE--------HHHHHHHHHHHHHHTCC---------SHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHHHcCC-eEEEEE--------HHHHHHHHHHHhcCchH---------HHHH--
Confidence 46899999999999999999998 442 122 234444 34444444444332211 1111
Q ss_pred HHHHhcCCcEEEEEecCCC--hhhHH--HHHhcCCC-CCCCcEEEEeeCc
Q 003399 258 LHEYIMTKRYLIVIDDVWT--IRMWD--VIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~--~~~~~--~l~~~~~~-~~~gs~IivTTR~ 302 (823)
+.+. +.-+|||||++. .+.|. .+...+.. ...|..||+||..
T Consensus 96 --~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 96 --KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp --HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred --HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 2222 456899999983 23332 22222211 1246788888854
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.70 E-value=2.2e-05 Score=81.48 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=38.0
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.+.+... -...+-+.|+|.+|+||||||+++++
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 57999999999998877431 12356689999999999999999987
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.67 E-value=2.7e-05 Score=74.77 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=38.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++||+..++.+.+.+.... ...+.|+|.+|+||||+|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 579999999999999987643 45678999999999999999987
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.65 E-value=4.5e-05 Score=70.21 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=35.8
Q ss_pred CeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 158 DTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+++|+...++++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999888643222345779999999999999999973
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.62 E-value=0.0001 Score=79.74 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=38.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|++..++.+...+..+. ....+.|+|..|+||||+|+.+.+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999997654 234788999999999999999986
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=3.9e-05 Score=75.05 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=39.8
Q ss_pred CCeEeccc----cHHHHHHHHHcCCCC--eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 157 RDTVGLDD----RMEELLDLLIEGPPQ--LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 157 ~~~vGr~~----~~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
+++++.+. ..+.+.+++...... ...+.|+|.+|+||||||+++++ ........++|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~ 89 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVY 89 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 45666543 344455555543221 26889999999999999999998 5544445667777
No 181
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.57 E-value=6.1e-05 Score=76.45 Aligned_cols=81 Identities=22% Similarity=0.095 Sum_probs=62.2
Q ss_pred HHhcCCCcceEEEccCCCCccc---cccccCccccceeeccCCCCcccchhhhhcCC--CccEEeCCCCcccc-cc----
Q 003399 514 KIYGMFKLLRVLDLGSLVLIQY---PSGIENLFLLRYLKLNIPSLKSLPSSLLSNLL--NLYTLDMPFSYIDH-TA---- 583 (823)
Q Consensus 514 ~~~~~~~~LrvL~L~~~~l~~l---p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~--~L~~L~L~~~~l~~-lp---- 583 (823)
....+++.|+.|+|++|.+..+ |..+..+++|++|+|++|.|..+. .+ ..+. +|++|+|++|.+.. +|
T Consensus 164 i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 164 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred HHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhcccCCcceEEccCCcCccccCcchh
Confidence 3446788999999999998754 466778999999999999988773 34 5555 89999999997753 33
Q ss_pred ---hhhcCCCCCceee
Q 003399 584 ---DEFWKMNKLRHLN 596 (823)
Q Consensus 584 ---~~i~~L~~L~~L~ 596 (823)
..+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 2367789999885
No 182
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.56 E-value=2.4e-05 Score=82.64 Aligned_cols=120 Identities=15% Similarity=0.139 Sum_probs=74.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccc-ccCcc-eeEEEeCCCCCCCCHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYV-KHYFD-CHAWISEPYSNEYDADQIVDIII 234 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~vs~~~~~~~~~~~i~ 234 (823)
.+++|++..++.+.+++..+. ...+.++|.+|+||||+|+.+++ .+ ...+. ..+.+. .+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~--~~~~~~~~------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMN--ASDERGID------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEE--TTSTTCTT-------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEe--CccccChH-------
Confidence 568999999999888887654 33489999999999999999987 33 12221 223344 33321110
Q ss_pred HHhCCCCCCcccccCCHHHHHHHHHHH--h-cCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 235 KFLMPSSRLSEIEDKNYEMKKIILHEY--I-MTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
...+........ + .+++.++|+|++... ...+.+...+.....+.++|+||....
T Consensus 84 ---------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 84 ---------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp ---------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ---------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 001111111111 1 256889999999764 455666666666566788888887654
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.53 E-value=0.00013 Score=77.29 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=73.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKF 236 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~ 236 (823)
.+++|.++.++.+.+++..+. ...++-+.|..|+||||+|+.+.+ ... ...+.+. .+. .....+ ++.+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~---~~~~~i~--~~~-~~~~~i-~~~~~~ 95 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVN---ADMMFVN--GSD-CKIDFV-RGPLTN 95 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTT---EEEEEEE--TTT-CCHHHH-HTHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhC---CCEEEEc--ccc-cCHHHH-HHHHHH
Confidence 579999999999999998654 346777888899999999999987 332 2234455 333 222222 221111
Q ss_pred hCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChh---hHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 237 LMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIR---MWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~---~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
..... ...+++-+||+||+.... ..+.+...+.....+.++|+||....
T Consensus 96 ~~~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 96 FASAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHHBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred HHhhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 11100 012377899999998753 44444443333334678888887654
No 184
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.47 E-value=7.3e-05 Score=68.54 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=34.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.++|++..++++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 46899999999988887642112334779999999999999999983
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.46 E-value=0.00013 Score=74.42 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCeEeccccHHHHHHHHHc---CC-------CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE---GP-------PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.+++.. .+ ...+-|.|+|.+|+|||++|+++++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 6799999888888766532 11 2345688999999999999999998
No 186
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.43 E-value=0.0033 Score=68.27 Aligned_cols=284 Identities=10% Similarity=0.089 Sum_probs=160.5
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCcccc-ccccCccccceeeccCCCCcccchhhhhcCCCc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNL 569 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 569 (823)
|.+|+++.+..+....+ ..+....|..+..|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..++...+..+.+|
T Consensus 86 C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 86 CTSLKRVTIQDNKPSCV-KKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSL 162 (394)
T ss_dssp CTTCCEEEEGGGCCCCC-CEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC
T ss_pred CccCceEeecCCCCCee-eEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc-eeeeecccceeccccc
Confidence 89999999876432110 2344567889999988777544 44443 3467889999999975 3566666666889999
Q ss_pred cEEeCCCCcccccchhhcCCCCCceeeccCcccCCCCCCCcCCCcccceeeccCCC-cccccc--------------cCC
Q 003399 570 YTLDMPFSYIDHTADEFWKMNKLRHLNFGSITLPAHPGKYCGSLENLNFISALHPC-CCTEDI--------------LGR 634 (823)
Q Consensus 570 ~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~~~~i~~L~~L~~l~~~~~~-~~~~~~--------------l~~ 634 (823)
+.+.+..+ +..+....-...+|+.+.+..+... .....+..+..|......... ...... ...
T Consensus 163 ~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T 4gt6_A 163 HTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS 240 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT
T ss_pred ccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhccccceecccccccccccceeeccccccccccccccc
Confidence 99999765 5556544334467888876543211 001122333334333222100 000000 111
Q ss_pred CCccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCC
Q 003399 635 LPNLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLP 714 (823)
Q Consensus 635 l~~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~ 714 (823)
...+..+.+...- ...-...+..+..|+.+.+.. ++..+.-..+..+++|+.+.+... +.......+.+++
T Consensus 241 ~~~~~~~~ip~~v---~~i~~~aF~~c~~L~~i~lp~-----~~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~ 311 (394)
T 4gt6_A 241 QREDPAFKIPNGV---ARIETHAFDSCAYLASVKMPD-----SVVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCI 311 (394)
T ss_dssp TCCCSEEECCTTE---EEECTTTTTTCSSCCEEECCT-----TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccccceEEcCCcc---eEcccceeeecccccEEeccc-----ccceecCcccccccccccccCCCc-ccccCceeecCCC
Confidence 2222333322110 000123566778888888742 344444333456778888888543 2333345678899
Q ss_pred CCCeEEeecCccCCccccccCCCCCcccEEeeecCCCCccee-ecccccccccEEEeecCCCCCCCchhccCCCCCcEEE
Q 003399 715 LLQVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWT-MGNAAMPKLECLIINPCAYLKKMPEQLWCIKSLNKFD 793 (823)
Q Consensus 715 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~lp~L~~L~i~~C~~l~~lp~~l~~l~~L~~L~ 793 (823)
+|+.+.|..+ ... .-...+.++.+|+.+.|.. .++.+. ..+..+++|+.+.+.+.... ...+..+.+|+.|.
T Consensus 312 ~L~~i~lp~~-v~~-I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQ-ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLP 384 (394)
T ss_dssp TCCEEECCTT-CCE-ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----
T ss_pred CcCEEEeCCc-ccE-ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEE
Confidence 9999999633 221 1233466788999999964 356663 34667889999998765321 13455677788777
Q ss_pred ec
Q 003399 794 CW 795 (823)
Q Consensus 794 l~ 795 (823)
+.
T Consensus 385 i~ 386 (394)
T 4gt6_A 385 VA 386 (394)
T ss_dssp --
T ss_pred eC
Confidence 64
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.41 E-value=7.6e-05 Score=78.39 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=35.6
Q ss_pred CeEeccccHHHHHHHHHcC-------------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 158 DTVGLDDRMEELLDLLIEG-------------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.+..++.+.+++... ......+.|+|.+|+|||++|+.+++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5889998888888765421 23355789999999999999998877
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.35 E-value=0.00019 Score=75.76 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=37.6
Q ss_pred CCeEeccccHHHHHHHHHc----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.+.+.. .....+-|.++|.+|+|||+||+++++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999888731 112346789999999999999999998
No 189
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.33 E-value=0.00074 Score=69.29 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=35.9
Q ss_pred CCeEeccccHHHHHHH-------HHc-CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDL-------LIE-GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~-------L~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.....+.++.. +.. .......+.|+|.+|+|||++|+++++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 5688988887777663 322 134577899999999999999999998
No 190
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.30 E-value=4.2e-05 Score=76.98 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=38.2
Q ss_pred CCeEecc---ccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 157 RDTVGLD---DRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 157 ~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.+++|.+ ...+.+..+...+ ..+.+.|+|.+|+||||||+.+++ ........+.|+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~ 87 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIP 87 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 5677643 3344555555443 356788999999999999999998 4443344566777
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.29 E-value=0.00094 Score=70.31 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=37.3
Q ss_pred CCeEeccccHHHHHHHHHc---------C-CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE---------G-PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.+.+.. + ....+-|.++|.+|+|||+||+++++
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 5799999999988887642 1 12346789999999999999999998
No 192
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.27 E-value=0.00019 Score=79.16 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=68.2
Q ss_pred CCeE-ecccc--HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcc--eeEEEeCCCCCCCCHHHHHH
Q 003399 157 RDTV-GLDDR--MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD--CHAWISEPYSNEYDADQIVD 231 (823)
Q Consensus 157 ~~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~vs~~~~~~~~~~ 231 (823)
+.|| |.... ...+......... ...+.|+|.+|+||||||+.+++ .....|. .+++++ ...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~--------~~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT--------SEKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE--------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee--------HHHHHH
Confidence 3455 64433 2333333333322 67899999999999999999998 5544442 344555 223444
Q ss_pred HHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChh----hHHHHHhcCCC-CCCCcEEEEeeCc
Q 003399 232 IIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIR----MWDVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~----~~~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
++...+... . ...+.+.+..+.-+|++||+.... .-+.+...+.. ...|..||+||.+
T Consensus 174 ~~~~~~~~~---------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 174 DLVDSMKEG---------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHTT---------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHcc---------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 444444321 1 112333444467799999996532 22333333221 2346789999876
No 193
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=0.00029 Score=75.38 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccccc--Ccc-eeEEEeCCCCCCCCHHHHHHHH
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKH--YFD-CHAWISEPYSNEYDADQIVDII 233 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~-~~~wv~~~vs~~~~~~~~~~~i 233 (823)
.+++|+++.++.+..++..+. ...+.++|..|+||||+|+.+.+ .+.. .+. ....+. .+.......+. +.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~--~l~~~~~~~~~~~~~~--~~~~~~~~~~~-~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK--ELYGPDLMKSRILELN--ASDERGISIVR-EK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH--HHHHHHHHTTSEEEEC--SSSCCCHHHHT-TH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH--HhCCCcccccceEEEc--cccccchHHHH-HH
Confidence 579999999999999987764 22388999999999999999987 3321 121 223344 44433333222 22
Q ss_pred HHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcc
Q 003399 234 IKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDI 303 (823)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 303 (823)
+........ ...... .....-..++-+|++|++... ...+.+...+.......++|++|...
T Consensus 110 ~~~~~~~~~---~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 110 VKNFARLTV---SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HHHHHHSCC---CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHhhhcc---cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 221111000 000000 001111235679999998653 33444544443334456787777554
No 194
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.22 E-value=0.0021 Score=69.17 Aligned_cols=46 Identities=26% Similarity=0.243 Sum_probs=36.9
Q ss_pred CCeEeccccHHH---HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEE---LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|++..++. +.+.+..+....+.+.|+|.+|+|||++|+.+.+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 589999988776 4555555543346889999999999999999998
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.18 E-value=0.0018 Score=67.42 Aligned_cols=46 Identities=30% Similarity=0.312 Sum_probs=37.9
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.+++.. +-...+.|.++|.+|+||||||+++++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 5799999999988887753 112356789999999999999999998
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.15 E-value=0.0005 Score=72.60 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCeE-eccc--cHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHH
Q 003399 157 RDTV-GLDD--RMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDII 233 (823)
Q Consensus 157 ~~~v-Gr~~--~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i 233 (823)
++|| |... ....+..++.........+.|+|.+|+||||||+.+++ .....-..+++++ . ..+...+
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~--~------~~~~~~~ 80 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSS--A------DDFAQAM 80 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEE--H------HHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEE--H------HHHHHHH
Confidence 3554 5332 23344444444332456789999999999999999998 3422211344555 2 2333344
Q ss_pred HHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCChh----hHHHHHhcCCC-CCCCcEEEEeeCc
Q 003399 234 IKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTIR----MWDVIREILPD-NQNGSRVLITLTD 302 (823)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~~----~~~~l~~~~~~-~~~gs~IivTTR~ 302 (823)
...+... .... +.+.+. +.-+|++||+.... ..+.+...+.. ...|..||+||.+
T Consensus 81 ~~~~~~~---------~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 81 VEHLKKG---------TINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHHHT---------CHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHcC---------cHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3333211 1111 122222 36699999996542 12233332221 1235678888754
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.14 E-value=0.00033 Score=75.05 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=37.9
Q ss_pred CCeEeccccHHHHHHHHHc----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+.+.. .....+.|.|+|..|+|||+||+++++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999887753 112356789999999999999999987
No 198
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.10 E-value=0.00056 Score=69.90 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..++|.+..+.++.+.+..-......|-|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 57899999999988877642222356779999999999999999973
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.07 E-value=0.00026 Score=78.01 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=38.0
Q ss_pred CCeEeccccH---HHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRM---EELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++||.+..+ ..+...+..+. ...+.++|.+|+||||+|+.+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH
Confidence 5799988887 77778887765 57889999999999999999998
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.06 E-value=0.022 Score=61.31 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=27.0
Q ss_pred HHHhcCCCcceEEEccCCCCccccc-cccCccccceeeccCCCCcccchhhhhcCCCccEEeCCC
Q 003399 513 EKIYGMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPF 576 (823)
Q Consensus 513 ~~~~~~~~~LrvL~L~~~~l~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~ 576 (823)
...|.+|.+|+.+.|..+ ++.++. .+.++ .|..+.+.. .+..++...|.. .+|+.+.+..
T Consensus 62 ~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~-~~L~~i~lp~ 122 (379)
T 4h09_A 62 EANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQG-TDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTT-CCCSEEECCT
T ss_pred HHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceecc-CCcccccCCC
Confidence 345666666666666432 333332 23332 344444432 244444444222 3555555543
No 201
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.04 E-value=0.00069 Score=72.43 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCeEeccccHHHHHHHHHc----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.|.+.+.. .....+-|.++|.+|+|||+||+++++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999887632 111234588999999999999999998
No 202
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.00072 Score=72.37 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=35.3
Q ss_pred CCeEeccccHHHHHHHH-HcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLL-IEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+...+.+.+++ ..+. ... +.|+|..|+||||+|+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 56899998888888887 4433 233 89999999999999998765
No 203
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.02 E-value=0.00033 Score=71.80 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=36.0
Q ss_pred CCeEeccccHHHHHHHHHc----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.+.+.. +....+-+.|+|.+|+|||+||+++++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 6799999999888877652 111123477999999999999999998
No 204
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.00 E-value=0.00085 Score=75.67 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=39.3
Q ss_pred CCeEeccccHHHHHHHHHcC---------------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG---------------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|++..++++.+++... .+..+.+.|+|.+|+||||+|+.+++
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999751 01347899999999999999999998
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.99 E-value=0.00023 Score=72.15 Aligned_cols=62 Identities=27% Similarity=0.224 Sum_probs=48.1
Q ss_pred cCccccceeeccCCCCcccc---hhhhhcCCCccEEeCCCCcccccchhhcCCC--CCceeeccCcccC
Q 003399 540 ENLFLLRYLKLNIPSLKSLP---SSLLSNLLNLYTLDMPFSYIDHTADEFWKMN--KLRHLNFGSITLP 603 (823)
Q Consensus 540 ~~L~~Lr~L~L~~~~i~~lp---~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~ 603 (823)
.++.+|+.|+|++|.|..++ ..+ +.+++|++|+|++|.+..+. .+..+. +|+.|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 46788999999999887654 444 78999999999999888773 344444 8999988888764
No 206
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.97 E-value=0.00078 Score=73.11 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCeEeccccHHHHHHHHHcC----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+++... ....+-|.|+|..|+|||+||+++.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 57999999999998887321 11246789999999999999999987
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.95 E-value=0.001 Score=69.15 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCeEeccccHHHHHHHHHcC----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+.+.+... ....+.|.|+|.+|+||||+|+.+++
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 57999999999998877431 11256789999999999999999997
No 208
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.94 E-value=0.002 Score=71.11 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=37.5
Q ss_pred CCeEeccccHHHHHHHHHc----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.+.+.. .....+-|.++|.+|+|||+||+++++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999887731 012346789999999999999999998
No 209
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.92 E-value=0.001 Score=70.76 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.9
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|++..++.+..++... ......|.|+|.+|+|||++|+++.+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 57999999999999888753 23456689999999999999999987
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.0011 Score=67.30 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=34.7
Q ss_pred CCeEeccccHHHHHHHHHc---C-------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE---G-------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++++.+.+.. . ....+-|.|+|..|+||||||+.+++
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5799999888877665431 1 11234588999999999999999997
No 211
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.0017 Score=69.06 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+...+..+. ...+.++|..|+||||+|+.+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 467898888888888887764 33389999999999999999987
No 212
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.72 E-value=0.002 Score=71.55 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=38.0
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.+|||+.+++.+.+.|.... ..-+.++|.+|+|||++|+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 579999999999999997643 33457999999999999999987
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.70 E-value=0.0021 Score=70.85 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=34.9
Q ss_pred CCeEeccccHHHHHHHHHc---C-------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE---G-------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++++.+.+.. . ..-.+-|.++|.+|.||||||+++++
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 5799999888777765432 1 11234478999999999999999998
No 214
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.68 E-value=0.00091 Score=70.09 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=37.6
Q ss_pred CCeEeccccHHHHHHHHHcCC-------CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGP-------PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.+...+.... .....+.++|..|+||||+|+.+++
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence 468899999888888876531 1246899999999999999999997
No 215
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.68 E-value=0.0014 Score=60.35 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=26.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
-..++|+|..|+|||||++.+++ .....=..++++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~--~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA--QALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH--HHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEc
Confidence 46899999999999999999998 3322111256666
No 216
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.57 E-value=0.0021 Score=77.29 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=38.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.++||+++++.+++.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999997754 34568999999999999999987
No 217
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.57 E-value=0.094 Score=56.21 Aligned_cols=258 Identities=10% Similarity=0.015 Sum_probs=114.1
Q ss_pred CCCccEEEeecCCCCCCCccchHHHhcCCCcceEEEccCCCCccccccccCccccceeeccCCCCcccchhhhhcCCCcc
Q 003399 491 DSQLHSFLCCSPESRHIDPIDWEKIYGMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLY 570 (823)
Q Consensus 491 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~LrvL~L~~~~l~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 570 (823)
|.+|+++.+...- ..+....|.+++ |..+.+.. .+..++.......+|+.+.+..+ +..+....+.+. +|.
T Consensus 68 C~~L~~I~lp~~v-----~~Ig~~aF~~c~-l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~~~-~l~ 138 (379)
T 4h09_A 68 CYNMTKVTVASTV-----TSIGDGAFADTK-LQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA-TTEIGNYIFYNS-SVK 138 (379)
T ss_dssp CTTCCEEEECTTC-----CEECTTTTTTCC-CCEEEECT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCC
T ss_pred CCCCCEEEeCCcc-----eEechhhhcCCC-CceEECCc-eeeEeccceeccCCcccccCCCc-cccccccccccc-eee
Confidence 7889999885432 234456777774 55555543 24445444334457888888754 444444443333 455
Q ss_pred EEeCCCCcccccc-hhhcCCCCCceeeccCcccCCCC-----------CC-CcCCCcccceeeccCCCcc-cccccCCCC
Q 003399 571 TLDMPFSYIDHTA-DEFWKMNKLRHLNFGSITLPAHP-----------GK-YCGSLENLNFISALHPCCC-TEDILGRLP 636 (823)
Q Consensus 571 ~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~-----------~~-~i~~L~~L~~l~~~~~~~~-~~~~l~~l~ 636 (823)
.+.+..+ +..+. ..+..+.+|....+..+...... .. .+.....+..+.+...... ....+..+.
T Consensus 139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~ 217 (379)
T 4h09_A 139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGK 217 (379)
T ss_dssp EEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCS
T ss_pred eeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeeccccccc
Confidence 5544332 33332 23555666666655433211000 00 0111222222222211110 111133445
Q ss_pred ccceEEeecccccchhhHHHhhcCCCCCcEEEeecCCCCCCCcEEeeCCcCcccCccEeEeecccCCCCCcccccCCCCC
Q 003399 637 NLRNLRIQGDLSYNQSLLSKSLCRLSCLESLKLANESKMPRLSKIALAEYLFPHSLTHLSFSNTVLMDDPMPTLEKLPLL 716 (823)
Q Consensus 637 ~L~~L~i~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L 716 (823)
+|+.+.+...- ...-...+..+..|+.+.+.. +++.+.-..+..+.+|+.+.+... +.......+..+++|
T Consensus 218 ~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~-----~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 218 NLKKITITSGV---TTLGDGAFYGMKALDEIAIPK-----NVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp SCSEEECCTTC---CEECTTTTTTCSSCCEEEECT-----TCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccceeeeccce---eEEccccccCCccceEEEcCC-----CccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 55555443321 000112344555666665532 344443333344455555555433 122223345556666
Q ss_pred CeEEeecCccCCccccccCCCCCcccEEeeecCCCCcceee-cccccccccEEEe
Q 003399 717 QVLKLKQNSYSGRKLTCGSYGFPNLKVLHLKSMLWLEEWTM-GNAAMPKLECLII 770 (823)
Q Consensus 717 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~-~~~~lp~L~~L~i 770 (823)
+.+.+.++.... .-...+.++.+|+.+.|.. .++.+.. .+..+++|+.+.+
T Consensus 289 ~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 289 TKVVMDNSAIET-LEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CEEEECCTTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccce-ehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 666665333221 1122344556666666642 2444422 2334455555544
No 218
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.56 E-value=0.0091 Score=61.97 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=70.5
Q ss_pred eccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCc-ccc-cCcceeEEEeCCCCC-CCCHHHHHHHHHHHh
Q 003399 161 GLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSS-YVK-HYFDCHAWISEPYSN-EYDADQIVDIIIKFL 237 (823)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-~~F~~~~wv~~~vs~-~~~~~~~~~~i~~~l 237 (823)
|-++.++.+.+.+..+. ...+-++|..|+||||+|+.+.+.- ... .+.+ ..++. .+. ...+..+ +++++.+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~--~~~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEID--PEGENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEEC--CSSSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEc--CCcCCCCHHHH-HHHHHHH
Confidence 34556677777777665 6788999999999999999997621 011 1223 34555 432 3333333 3344444
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcc
Q 003399 238 MPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDI 303 (823)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~ 303 (823)
.... ..+++-++|+|++... ...+.+...+....+.+.+|++|.+.
T Consensus 75 ~~~p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 75 NYSP--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp TSCC--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred hhcc--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 3211 0245678899999764 45666666655555677888777554
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.56 E-value=0.0021 Score=71.43 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++++.+++... ....+-|.|+|.+|+|||++|+++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999999998877531 23355688999999999999999987
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.55 E-value=0.0028 Score=66.01 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=37.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|+...+.++.+.+..-......|-|+|..|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4689999999999988866332344577999999999999999987
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0039 Score=66.53 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++++ +....|
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 5688999998888776542 122356688999999999999999998 544444
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0049 Score=66.90 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=39.7
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||+++++ +....|
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~ 243 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF 243 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE
Confidence 4678999988888777642 123457788999999999999999998 444433
No 223
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.48 E-value=0.011 Score=62.36 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 164 DRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 164 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+..+.+.+.+..+. -...+-++|..|+||||+|+.+.+
T Consensus 9 ~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 9 PDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 44556666665543 345788999999999999998876
No 224
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.0058 Score=66.14 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=39.7
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|.++.+++|.+.+.- +-...+=|-++|.+|.|||+||+++++ +....|
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 4688999988888776432 223467788999999999999999998 554444
No 225
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.38 E-value=0.0063 Score=72.22 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=38.3
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++||+++++.+.+.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 579999999999999987653 44567999999999999999987
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.36 E-value=0.0092 Score=58.62 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=52.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-----Cc--c-cccCCH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-----LS--E-IEDKNY 251 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-----~~--~-~~~~~~ 251 (823)
-.++.|+|.+|+||||||..+.. ..-..++|++ ....++..++.. +.+..+.... .. . ....+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVD--TEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEE--SSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEE--CCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 46899999999999999999986 1124678888 666566655543 3333221100 00 0 011111
Q ss_pred HHHHHHHHHHhcCCcEEEEEecCCC
Q 003399 252 EMKKIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 252 ~~~~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
......++..++.+.-+||+|.+-.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 2344455555544567899998754
No 227
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.35 E-value=0.0035 Score=64.96 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=24.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHY 209 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 209 (823)
..+.+.++|.+|+|||+||+++++ .....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~--~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR--KMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH--HHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 456788999999999999999998 44433
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.33 E-value=0.0065 Score=67.36 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=34.6
Q ss_pred CCeEeccccHHHHHHHHH---cCC-------CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLI---EGP-------PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++++.+... ... .-.+=|.|+|..|+||||||+++++
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 679999988877766543 210 1122389999999999999999997
No 229
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.008 Score=64.40 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||.||+++++ +....|
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 4678899988888776542 113457789999999999999999998 444443
No 230
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.17 E-value=0.0037 Score=64.43 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=46.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCC--CCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPY--SNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 257 (823)
-+++.|+|++|+||||||.++... .-..++|++ . .+..+. -..+.+.....
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs--~~~eE~v~~--------------------~~~~le~~l~~ 175 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYAT--VRFGEPLSG--------------------YNTDFNVFVDD 175 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEE--EEBSCSSTT--------------------CBCCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEE--ecchhhhhh--------------------hhcCHHHHHHH
Confidence 456789999999999999999862 222456777 5 222110 01345666666
Q ss_pred HHHHhcCCcEEEEEecCCCh
Q 003399 258 LHEYIMTKRYLIVIDDVWTI 277 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~ 277 (823)
+.+.+.+.+ +||+|++...
T Consensus 176 i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 176 IARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHHHCS-EEEEECCTTT
T ss_pred HHHHHhhCC-EEEEeccccc
Confidence 777776666 9999999653
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.15 E-value=0.0061 Score=72.24 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=38.2
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.+|||+++++.+.+.|.... ..-+.++|.+|+||||+|+.+.+
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 579999999999999997743 33467999999999999999987
No 232
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.08 E-value=0.039 Score=58.22 Aligned_cols=101 Identities=21% Similarity=0.074 Sum_probs=62.9
Q ss_pred HHHHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCc-
Q 003399 167 EELLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLS- 244 (823)
Q Consensus 167 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~- 244 (823)
..+-..|. .+=..-+++.|+|.+|+||||||.++.. .....=..++|++ ....++.. .+++++......
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId--~E~s~~~~-----ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFID--AEHALDPV-----YAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEE--SSCCCCHH-----HHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEe--cccccchH-----HHHHcCCchhhhh
Confidence 34444444 2322357999999999999999999986 3332223578888 76666654 455555432100
Q ss_pred ccccCCHHHHHHHHHHHhc-CCcEEEEEecCCC
Q 003399 245 EIEDKNYEMKKIILHEYIM-TKRYLIVIDDVWT 276 (823)
Q Consensus 245 ~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw~ 276 (823)
-....+.++....+...++ .+.-++|+|.+-.
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 0234456666666666664 4556899998743
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.91 E-value=0.016 Score=59.33 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=33.3
Q ss_pred CCeEeccccHHHHHHHHHc--C-------C-CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE--G-------P-PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++++.+.... . + .-.+=+.|+|..|+||||||+.+.+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 5789988877776655432 0 0 0112289999999999999999997
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.78 E-value=0.0074 Score=62.87 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=34.5
Q ss_pred cHHHHHHHHHcCCC-CeEEEEEEecCCchHHHHHHHHhCCcccc-cCcceeEEEe
Q 003399 165 RMEELLDLLIEGPP-QLSVVVILDSIGLDKTAFAGEAYNSSYVK-HYFDCHAWIS 217 (823)
Q Consensus 165 ~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~ 217 (823)
..+.+.+++..... ....+.++|..|+|||+||+++++ ... ..-..+.+++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEE
Confidence 34445556654322 246788999999999999999998 444 3333456666
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0069 Score=65.60 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=40.1
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++++ +....|
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~ 234 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF 234 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe
Confidence 5688999999988876642 223456688999999999999999998 444433
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.59 E-value=0.0052 Score=72.86 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=37.6
Q ss_pred CCeEeccccHHHHHHHHHcCC-------CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGP-------PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.+...+.... .....+.++|..|+|||++|+++++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999888886421 1234799999999999999999987
No 237
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.50 E-value=0.069 Score=56.42 Aligned_cols=102 Identities=22% Similarity=0.076 Sum_probs=61.0
Q ss_pred HHHHHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCc
Q 003399 166 MEELLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLS 244 (823)
Q Consensus 166 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~ 244 (823)
...+-.+|. .+=..-+++.|+|.+|+||||||.++.. .....=..++|++ ....++.. .++.++...+..
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~--~E~~~~~~-----~a~~lG~~~~~l 116 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFID--AEHALDPE-----YAKKLGVDTDSL 116 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEE--SSCCCCHH-----HHHHTTCCGGGC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEE--CCCCcCHH-----HHHHcCCCHHHe
Confidence 334444444 2322356899999999999999999876 3332224688999 77766643 244454321100
Q ss_pred -ccccCCHHHHHHHHHHHhcC-CcEEEEEecCCC
Q 003399 245 -EIEDKNYEMKKIILHEYIMT-KRYLIVIDDVWT 276 (823)
Q Consensus 245 -~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw~ 276 (823)
-....+.++....+....+. +.-+||+|.+-.
T Consensus 117 ~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 117 LVSQPDTGEQALEIADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp EEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGG
T ss_pred EEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHh
Confidence 01233556666666655543 566999998743
No 238
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.49 E-value=0.018 Score=51.28 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=40.6
Q ss_pred EEEccCCCCc--cccccccCccccceeeccCCCCcccchhhhhcCCCccEEeCCCCcc
Q 003399 524 VLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPSSLLSNLLNLYTLDMPFSYI 579 (823)
Q Consensus 524 vL~L~~~~l~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 579 (823)
+++.++..++ .+|..+. .+|++|+|++|.|..+|...|..+.+|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6777777777 7776543 3688888888888888887767888888888887633
No 239
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.47 E-value=0.044 Score=58.01 Aligned_cols=101 Identities=18% Similarity=-0.002 Sum_probs=59.2
Q ss_pred HHHHHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC-
Q 003399 166 MEELLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL- 243 (823)
Q Consensus 166 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~- 243 (823)
...+-.+|. .+=+.-+++.|.|.+|+||||||.++.. .....=..++|++ ....++... +..++...+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid--~E~s~~~~~-----a~~~g~~~~~l 118 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFID--AEHALDPIY-----ARKLGVDIDNL 118 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE--SSCCCCHHH-----HHHTTCCGGGC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEe--CCCCccHHH-----HHHcCCChhhe
Confidence 344444443 2322346899999999999999998876 3333334688999 777776432 4444432110
Q ss_pred cccccCCHHHHHHHHHHHhc-CCcEEEEEecCC
Q 003399 244 SEIEDKNYEMKKIILHEYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw 275 (823)
.-....+.++....+....+ .+--+||+|.+-
T Consensus 119 ~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 119 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEEECGG
T ss_pred eeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHH
Confidence 00122345555555554443 445589999874
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.43 E-value=0.03 Score=65.42 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCeEeccccHHHHHHHHHc----C-------CCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC
Q 003399 157 RDTVGLDDRMEELLDLLIE----G-------PPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD 225 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~ 225 (823)
.++.|.++.+++|.+++.- . -...+-|-++|.+|.|||+||+++++ +...+| +.|. .+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~--~~---- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLIN--GP---- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEE--HH----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEE--hH----
Confidence 4688999999888887532 1 12457789999999999999999999 444333 3444 11
Q ss_pred HHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 003399 226 ADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 226 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
++.. . ........+........+..+.+|++|+++.
T Consensus 273 ------~l~s---k------~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 ------EIMS---K------LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ------HHHS---S------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred ------Hhhc---c------cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1111 1 0111122233333344456789999999964
No 241
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.0071 Score=65.54 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=39.7
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhCCcccccCc
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF 210 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 210 (823)
.++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||+++++ +....|
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f 243 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF 243 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE
Confidence 5788999999888776432 123467788999999999999999998 444433
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.33 E-value=0.026 Score=55.78 Aligned_cols=117 Identities=15% Similarity=-0.021 Sum_probs=61.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCc---c-----------
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLS---E----------- 245 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~---~----------- 245 (823)
-.+++|+|..|+|||||++.+.. .....=..++|+. ... ...++...+. .++...... .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~--~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVT--TEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEE--SSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEE--ccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 36899999999999999999985 2222122466666 333 3444443332 333211000 0
Q ss_pred -----cccCCHHHHHHHHHHHhcC-C--cEEEEEecCC-----ChhhHHHHHhcCCC--CCCCcEEEEeeCcc
Q 003399 246 -----IEDKNYEMKKIILHEYIMT-K--RYLIVIDDVW-----TIRMWDVIREILPD--NQNGSRVLITLTDI 303 (823)
Q Consensus 246 -----~~~~~~~~~~~~l~~~L~~-k--r~LlVlDdvw-----~~~~~~~l~~~~~~--~~~gs~IivTTR~~ 303 (823)
....+..+....+...+.. + ..+||+|..- +......+...+.. ...|..||+||...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 0112455665555555532 3 3499999986 22222222222211 12467888888765
No 243
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.32 E-value=0.036 Score=58.90 Aligned_cols=101 Identities=19% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHHHHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-C
Q 003399 166 MEELLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-L 243 (823)
Q Consensus 166 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~ 243 (823)
...|-.+|. .+=..-+++.|.|.+|+||||||..+.. .....=..++|++ ....++.. .++.++...+ .
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~--~E~s~~~~-----~a~~~g~d~~~l 129 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFID--AEHALDPV-----YARALGVNTDEL 129 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEE--SSCCCCHH-----HHHHTTCCGGGC
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEE--CCCChhHH-----HHHHcCCCHHHc
Confidence 344444443 2312345888899999999999988876 3332234789999 77766644 2444443211 0
Q ss_pred cccccCCHHHHHHHHHHHhcC-CcEEEEEecCC
Q 003399 244 SEIEDKNYEMKKIILHEYIMT-KRYLIVIDDVW 275 (823)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdvw 275 (823)
.-....+.++....+....+. +--+||+|.+-
T Consensus 130 ~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 130 LVSQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp EEECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred eeecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 001234566666677666653 45589999884
No 244
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.30 E-value=0.016 Score=68.79 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=38.2
Q ss_pred CCeEeccccHHHHHHHHHc-----------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE-----------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++++.+++.. +-.....|.|+|.+|+||||||+.+.+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5689999999999888753 112346799999999999999999987
No 245
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.25 E-value=0.079 Score=54.34 Aligned_cols=87 Identities=7% Similarity=0.031 Sum_probs=55.8
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccC--cceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCc-ccccCCHHHH-HHH
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHY--FDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLS-EIEDKNYEMK-KII 257 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~-~~~ 257 (823)
++-|.|.+|+||||||.++.. ..... =..++||+ ....++.. .+++++...+.- -....+.++. ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId--~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYD--SEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEE--SSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEe--ccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHH
Confidence 789999999999999988776 33333 24688999 77777654 366776542210 0233455555 333
Q ss_pred HHHH--h-cCCcEEEEEecCCCh
Q 003399 258 LHEY--I-MTKRYLIVIDDVWTI 277 (823)
Q Consensus 258 l~~~--L-~~kr~LlVlDdvw~~ 277 (823)
+... + .++.-+||+|-|-..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHHHhhccCceEEEEeccccc
Confidence 3332 3 357789999998543
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.16 E-value=0.047 Score=54.34 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=53.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCccccc----CcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCC-----CCcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWISEPYSNEYDADQIVDIIIKFLMPSS-----RLSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~ 250 (823)
-.++.|+|.+|+|||||++.+........ .-..++|++ ....++..++. .+++.++... ...-....+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~--~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID--TEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE--SSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE--CCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 46899999999999999999876211111 135788988 66655555443 3444444321 000011222
Q ss_pred HHH---HHHHHHHHhc-CCcEEEEEecCCC
Q 003399 251 YEM---KKIILHEYIM-TKRYLIVIDDVWT 276 (823)
Q Consensus 251 ~~~---~~~~l~~~L~-~kr~LlVlDdvw~ 276 (823)
..+ ....+.+.+. .+.-+||+|.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 333 2333445554 4677899998854
No 247
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.15 E-value=0.053 Score=57.29 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=55.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhCCccccc----CcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-----Cccccc
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYNSSYVKH----YFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-----LSEIED 248 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~ 248 (823)
..-.++.|+|.+|+||||||..+........ .-..++|++ ....++..++.. ++..++.... ..-...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~--~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID--TENTFRPDRLRD-IADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE--SSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE--CCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeec
Confidence 3457999999999999999998876311111 224788999 777777766543 3444443210 000011
Q ss_pred CCHH---HHHHHHHHHhc---CCcEEEEEecCCC
Q 003399 249 KNYE---MKKIILHEYIM---TKRYLIVIDDVWT 276 (823)
Q Consensus 249 ~~~~---~~~~~l~~~L~---~kr~LlVlDdvw~ 276 (823)
.+.+ ++...+.+.++ .+--+||+|.+-.
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1222 33334444443 4556888888754
No 248
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.07 E-value=0.035 Score=56.62 Aligned_cols=46 Identities=26% Similarity=0.228 Sum_probs=32.9
Q ss_pred CCeEeccccHHHHHHHHHc---C-------C-CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE---G-------P-PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~---~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|.++.++++.+.+.. . + .-.+=+.++|..|.||||||+.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 5788988888888765431 0 0 1112299999999999999999997
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.00 E-value=0.018 Score=54.78 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=61.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCC---CCCHHHHHHHHHHHhCC------CCCCcc-----
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSN---EYDADQIVDIIIKFLMP------SSRLSE----- 245 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~---~~~~~~~~~~i~~~l~~------~~~~~~----- 245 (823)
-..|-|++-.|.||||.|-...- +...+=-.+.++. .-. .+....++.. +.. ......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQ--F~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQ--FIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEE--SSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEE--eeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcH
Confidence 34677777788999999987765 3333333455554 322 2233344333 320 000000
Q ss_pred cccCCHHHHHHHHHHHhcCCcE-EEEEecCCCh-----hhHHHHHhcCCCCCCCcEEEEeeCcc
Q 003399 246 IEDKNYEMKKIILHEYIMTKRY-LIVIDDVWTI-----RMWDVIREILPDNQNGSRVLITLTDI 303 (823)
Q Consensus 246 ~~~~~~~~~~~~l~~~L~~kr~-LlVlDdvw~~-----~~~~~l~~~~~~~~~gs~IivTTR~~ 303 (823)
.+..........+++.+.+.+| |||||++-.. ...+++...+........||+|+|..
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 0011123344556666665544 9999998432 22333443333333456899999985
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.97 E-value=0.019 Score=55.58 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=32.1
Q ss_pred ccccHHHHHHHHHcC-CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 162 LDDRMEELLDLLIEG-PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 162 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
|++.++.+.+.+... .....+|+|.|..|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445567777777653 23468999999999999999999876
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.95 E-value=0.013 Score=57.20 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443334578999999999999999999986
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.93 E-value=0.036 Score=58.17 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=55.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccC----cceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-----CcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHY----FDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-----LSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~ 250 (823)
-.++.|+|.+|+||||||.++......... -..++|++ ....++..++.. +++.++.... ..-....+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~--~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID--TEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE--SSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE--CCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCC
Confidence 468999999999999999988752111110 24789999 777777776653 4455543210 00011222
Q ss_pred HH---HHHHHHHHHhc--CCcEEEEEecCCC
Q 003399 251 YE---MKKIILHEYIM--TKRYLIVIDDVWT 276 (823)
Q Consensus 251 ~~---~~~~~l~~~L~--~kr~LlVlDdvw~ 276 (823)
.+ ++...+...++ .+.-+||+|.+-.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 23 23445555553 4566888888753
No 253
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.87 E-value=0.033 Score=62.93 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=34.3
Q ss_pred CeEeccccHHHHHHHHHc----CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 158 DTVGLDDRMEELLDLLIE----GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++|.++..+.+.+.+.- ......++.++|.+|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 478888777777555432 122356899999999999999999987
No 254
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.79 E-value=0.014 Score=57.36 Aligned_cols=113 Identities=17% Similarity=-0.013 Sum_probs=64.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIILH 259 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 259 (823)
-.++.|.|..|+||||++..+.+ +...+-..++.+. ... +.+ -...+++.++..... .......++...+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~--~~~--d~r-~~~~i~srlG~~~~~--~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFK--PKI--DTR-SIRNIQSRTGTSLPS--VEVESAPEILNYIM 82 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEE--ECC--CGG-GCSSCCCCCCCSSCC--EEESSTHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEE--ecc--Cch-HHHHHHHhcCCCccc--cccCCHHHHHHHHH
Confidence 46888999999999999988877 4443333344443 222 111 112344444432211 22234455666666
Q ss_pred HHhcCCcE-EEEEecCCCh--hhHHHHHhcCCCCCCCcEEEEeeCcch
Q 003399 260 EYIMTKRY-LIVIDDVWTI--RMWDVIREILPDNQNGSRVLITLTDIE 304 (823)
Q Consensus 260 ~~L~~kr~-LlVlDdvw~~--~~~~~l~~~~~~~~~gs~IivTTR~~~ 304 (823)
+.+.+.++ +||+|.+... ++.+.+...-. .|-.||+|-+..+
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 66655555 9999998642 34444433211 2678999988654
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.69 E-value=0.0092 Score=63.04 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCeEeccccHHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.+...+..+ ......+.++|..|+||||||+.+.+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 46788887777776666542 22346799999999999999999998
No 256
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.69 E-value=0.023 Score=68.18 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=36.6
Q ss_pred CeEeccccHHHHHHHHHcC-------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 158 DTVGLDDRMEELLDLLIEG-------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.+..++.+...+... ......+.|+|..|+|||++|+.+.+
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999998888887542 11236889999999999999999987
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.67 E-value=0.043 Score=57.48 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=57.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCccccc---------Cc-----ceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC--
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKH---------YF-----DCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-- 242 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-- 242 (823)
.-.++.|+|.+|+||||||.++........ .. ..++|++ ....++..++.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~--~e~~~~~~~l~~-~~~~~g~~~~~~ 173 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID--TEGTFRPERIMQ-MAEHAGIDGQTV 173 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE--SSSCCCHHHHHH-HHHHHTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE--CCCCCCHHHHHH-HHHHcCCCHHHH
Confidence 357999999999999999998875211111 11 4788999 888887777664 3455544210
Q ss_pred ---CcccccCCHH---HHHHHHHHHhcC--CcEEEEEecCCC
Q 003399 243 ---LSEIEDKNYE---MKKIILHEYIMT--KRYLIVIDDVWT 276 (823)
Q Consensus 243 ---~~~~~~~~~~---~~~~~l~~~L~~--kr~LlVlDdvw~ 276 (823)
..-....+.+ ++...+.+.++. +.-+||+|.+-.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0001122333 234445555543 456888998743
No 258
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.56 E-value=0.01 Score=61.80 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=37.2
Q ss_pred CCeEeccccHHHHHHHHHcC------------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG------------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.+...+... ......+.++|.+|+|||++|+.+.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 47899999999998887641 11245678999999999999999987
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.55 E-value=0.016 Score=54.41 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=18.8
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 003399 181 SVVVILDSIGLDKTAFAGEA 200 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v 200 (823)
.+|.|.|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 260
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.53 E-value=0.024 Score=54.18 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=17.7
Q ss_pred hcCCCcceEEEccCCCCc-----cccccccCccccceeeccCCCCc
Q 003399 516 YGMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK 556 (823)
Q Consensus 516 ~~~~~~LrvL~L~~~~l~-----~lp~~i~~L~~Lr~L~L~~~~i~ 556 (823)
+..-+.|+.|+|++|.+. .+-..+..-..|++|+|++|.|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344444555555544443 22223333344455555444443
No 261
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.47 E-value=0.02 Score=54.76 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|+|+.|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.39 E-value=0.034 Score=57.10 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=23.2
Q ss_pred CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 177 PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 177 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44678999999999999999999876
No 263
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.31 E-value=0.067 Score=51.07 Aligned_cols=88 Identities=7% Similarity=0.053 Sum_probs=66.3
Q ss_pred hHHHhcCCCcceEEEccCC-CCc-----cccccccCccccceeeccCCCCc-----ccchhhhhcCCCccEEeCCCCccc
Q 003399 512 WEKIYGMFKLLRVLDLGSL-VLI-----QYPSGIENLFLLRYLKLNIPSLK-----SLPSSLLSNLLNLYTLDMPFSYID 580 (823)
Q Consensus 512 ~~~~~~~~~~LrvL~L~~~-~l~-----~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~ 580 (823)
+...+.+-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++|.|. .+-..+ ..-+.|++|+|++|.|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCC
Confidence 4456677889999999986 665 35566667789999999999887 344444 66688999999999775
Q ss_pred -----ccchhhcCCCCCceeeccCc
Q 003399 581 -----HTADEFWKMNKLRHLNFGSI 600 (823)
Q Consensus 581 -----~lp~~i~~L~~L~~L~l~~~ 600 (823)
.+-+.+..-+.|++|+|+++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 33445666777999988764
No 264
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.26 E-value=0.05 Score=48.36 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=45.5
Q ss_pred ceeeccCCCCc--ccchhhhhcCCCccEEeCCCCcccccchh-hcCCCCCceeeccCccc
Q 003399 546 RYLKLNIPSLK--SLPSSLLSNLLNLYTLDMPFSYIDHTADE-FWKMNKLRHLNFGSITL 602 (823)
Q Consensus 546 r~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 602 (823)
..++-++.+++ .+|..+ -.+|++|+|++|.|+.+|.+ +..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47788888888 899755 45799999999999999765 78899999999998854
No 265
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.16 E-value=0.017 Score=54.51 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.11 E-value=0.021 Score=53.43 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 267
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.04 E-value=0.092 Score=57.20 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=58.8
Q ss_pred EEEEEEecCCchHHHHHHHHhCCccc-ccCcceeEEEeCCCCCCCC-HHHHHHHHHHHhCCC-------C--------CC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYV-KHYFDCHAWISEPYSNEYD-ADQIVDIIIKFLMPS-------S--------RL 243 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~-------~--------~~ 243 (823)
..++|+|-.|+|||+|++.+.+ .+ +.+-+.++++- +.+... +.++.+++.+.=... . +.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~--iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGG--VGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEE--ESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred CeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEE--cccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 4689999999999999998876 33 23457788888 888764 556777766542111 0 10
Q ss_pred cccccCCHHHHHHHHHHHhc---CCcEEEEEecCCCh
Q 003399 244 SEIEDKNYEMKKIILHEYIM---TKRYLIVIDDVWTI 277 (823)
Q Consensus 244 ~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdvw~~ 277 (823)
|...........-.+-++++ ++.+||++||+-..
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 10111122233344556664 58999999999543
No 268
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.92 E-value=0.023 Score=60.76 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=35.7
Q ss_pred CeEeccccHHHHHHHHHc-------------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 158 DTVGLDDRMEELLDLLIE-------------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 158 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.+..++.+...+.. .......|.++|.+|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 478998888888887731 111346789999999999999999997
No 269
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.91 E-value=0.024 Score=54.70 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 270
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.88 E-value=0.032 Score=61.66 Aligned_cols=46 Identities=22% Similarity=0.121 Sum_probs=35.9
Q ss_pred CCeEeccccHHHHHH---HHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLD---LLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~---~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++.+.. ++..+....+-+-++|.+|+|||++|+++.+
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 589999988876544 4444433345688999999999999999998
No 271
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.83 E-value=0.064 Score=58.17 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=60.4
Q ss_pred HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCccc-ccCcceeEEEeCCCCCCCC-HHHHHHHHHHHhCCC-----
Q 003399 168 ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYV-KHYFDCHAWISEPYSNEYD-ADQIVDIIIKFLMPS----- 240 (823)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~----- 240 (823)
++++.|..-. .=..++|+|..|+|||+|++.+.+ .+ +.+-+.++++- +.+... +.++.+++.+.=...
T Consensus 142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~--iGER~rEv~e~~~~~~~~~~l~~~~~~ 216 (482)
T 2ck3_D 142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAG--VGERTREGNDLYHEMIESGVINLKDAT 216 (482)
T ss_dssp HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEE--ESCCHHHHHHHHHHHHHHTSSCSSSSC
T ss_pred EEEecccccc-cCCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEE--CCCcchHHHHHHHHhhhccccccccCC
Confidence 3455554311 134789999999999999998876 33 23346677888 887753 556777776542221
Q ss_pred -CCCcccccCC--------HHHHHHHHHHHh---cCCcEEEEEecCCCh
Q 003399 241 -SRLSEIEDKN--------YEMKKIILHEYI---MTKRYLIVIDDVWTI 277 (823)
Q Consensus 241 -~~~~~~~~~~--------~~~~~~~l~~~L---~~kr~LlVlDdvw~~ 277 (823)
...--....+ .....-.+-+++ +++.+||++||+-..
T Consensus 217 ~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 217 SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1000000111 111222333444 469999999998543
No 272
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.81 E-value=0.027 Score=53.44 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999976
No 273
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.80 E-value=0.11 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|+|.+|+||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999876
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.78 E-value=0.031 Score=52.73 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.72 E-value=0.023 Score=53.28 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 276
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.68 E-value=0.029 Score=59.03 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=36.5
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|+++.++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 578999999999888887643 578899999999999999987
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.60 E-value=0.037 Score=51.96 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999998664
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.55 E-value=0.036 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|+|+.|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.53 E-value=0.036 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=21.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|.|+|+.|.||||+|+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.51 E-value=0.27 Score=50.49 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=26.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
..+|+++|.+|+||||++..+.. .....=..+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEe
Confidence 67999999999999999999886 3332223455555
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.48 E-value=0.05 Score=56.92 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=31.3
Q ss_pred EeccccHHHHHHHHHcC--CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 160 VGLDDRMEELLDLLIEG--PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 160 vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
|+.+.-.+++++.+... .+....|.|+|+.|+||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34445566666666432 33467799999999999999999887
No 282
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.44 E-value=0.045 Score=53.09 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|+|..|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 283
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.43 E-value=0.039 Score=52.67 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 284
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.40 E-value=0.034 Score=52.79 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+.|.|+|+.|+||||+|+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 285
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.31 E-value=0.044 Score=60.79 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=36.6
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.++.++.+...+..+. -|-++|.+|+|||+||+.+.+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHH
Confidence 578999999988888877653 678999999999999999998
No 286
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.28 E-value=0.042 Score=57.15 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.+||+|.|-|||||||.|..+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 479999999999999998876654
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.26 E-value=0.037 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|+|+.|+||||+++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.18 E-value=0.046 Score=52.17 Aligned_cols=22 Identities=9% Similarity=0.211 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 289
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.18 E-value=0.11 Score=55.06 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=53.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCc----ceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC-cc----ccc-
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYF----DCHAWISEPYSNEYDADQIVDIIIKFLMPSSRL-SE----IED- 248 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~-~~----~~~- 248 (823)
.-.++.|+|..|+|||||+..+.......... ..++|++ ....+...++ ..+++..+..... .+ ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~--~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID--TENTFRPERI-REIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE--SSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe--CCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecC
Confidence 45899999999999999999987621111111 2458988 5554544433 3344443321100 00 011
Q ss_pred --CCHHHHHHHHHHHhc------CCcEEEEEecCCCh
Q 003399 249 --KNYEMKKIILHEYIM------TKRYLIVIDDVWTI 277 (823)
Q Consensus 249 --~~~~~~~~~l~~~L~------~kr~LlVlDdvw~~ 277 (823)
....++...+...+. .+.=+||+|.+-..
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 112233444555554 46779999988654
No 290
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.13 E-value=0.042 Score=53.14 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|+|+|..|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999976
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.11 E-value=0.05 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|+|..|.|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999986
No 292
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.07 E-value=0.048 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.05 E-value=0.054 Score=51.72 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 294
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.05 E-value=0.046 Score=52.87 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 295
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.02 E-value=0.049 Score=54.81 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 296
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.99 E-value=0.26 Score=52.89 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=51.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccc----cCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCC-----CcccccCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVK----HYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSR-----LSEIEDKN 250 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~ 250 (823)
-.++.|+|..|+|||||+..+.-..... ..-..++|++ ....++..++. .+++.++.... ..-....+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid--~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID--TEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE--SSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe--CCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCC
Confidence 4699999999999999999664210111 1234688988 66666655543 35565554210 00011122
Q ss_pred HH---HHHHHHHHHhc-CCcEEEEEecCC
Q 003399 251 YE---MKKIILHEYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 251 ~~---~~~~~l~~~L~-~kr~LlVlDdvw 275 (823)
.+ +....+.+.+. .+.-+||+|.+-
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 22 22233333333 356788889864
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.97 E-value=0.056 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=22.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.96 E-value=0.038 Score=53.39 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.93 E-value=0.044 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 300
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.93 E-value=0.036 Score=52.83 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 301
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.89 E-value=0.049 Score=51.44 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|+|..|+|||||++.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 302
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.81 E-value=0.53 Score=48.87 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=37.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLM 238 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~ 238 (823)
.-.++.|.|.+|+||||+|..+... ....-..++|++ .. -+..++...++....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~s--lE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS--LE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEE--SS--SCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEE--CC--CCHHHHHHHHHHHHc
Confidence 3468999999999999999988753 221115677877 43 456677777766543
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.80 E-value=0.05 Score=52.50 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.78 E-value=0.053 Score=54.56 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++|.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999999976
No 305
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.78 E-value=0.04 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.|.|+.|+||||+|+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 306
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.73 E-value=0.082 Score=51.93 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+.+...+... ...+|.|+|.+|+|||||+..+..
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34444444332 478899999999999999999876
No 307
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.71 E-value=0.052 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.71 E-value=0.052 Score=52.52 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 309
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.70 E-value=0.33 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998876
No 310
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.68 E-value=0.051 Score=58.33 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=35.4
Q ss_pred CCeEeccccHHHHHHHHHc----------------------------CCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE----------------------------GPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.+...+.. .......|.++|..|+||||+|+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4688988888888877621 011234688999999999999999997
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.67 E-value=0.05 Score=52.91 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.67 E-value=0.053 Score=50.46 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 313
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.67 E-value=0.16 Score=52.50 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=47.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHH--HHHHHHHHHhCCCCCCcccccCCHHHH-H
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDAD--QIVDIIIKFLMPSSRLSEIEDKNYEMK-K 255 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~-~ 255 (823)
...+|+|+|.+|+||||++..+.. ..+..=..+.++. . ..+... +-+...++..+...- +.....+.... .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~--~-D~~r~~a~eqL~~~~~~~gl~~~-~~~s~~~~~~v~~ 176 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAA--A-DTFRAAAIEQLKIWGERVGATVI-SHSEGADPAAVAF 176 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEE--E-CTTCHHHHHHHHHHHHHHTCEEE-CCSTTCCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEc--c-ccccHHHHHHHHHHHHHcCCcEE-ecCCccCHHHHHH
Confidence 368999999999999999999886 3333222344544 2 222221 122334444443110 00112233322 2
Q ss_pred HHHHHHhcCCcEEEEEecCC
Q 003399 256 IILHEYIMTKRYLIVIDDVW 275 (823)
Q Consensus 256 ~~l~~~L~~kr~LlVlDdvw 275 (823)
..+...+..+.-++|+|-.-
T Consensus 177 ~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHhcCCCEEEEECCC
Confidence 23444444555578888663
No 314
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.67 E-value=0.051 Score=54.65 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCeEeccccHHHHHHHHHc--C-------C-CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIE--G-------P-PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.++.++++.+.... . + .-.+=+.|+|..|+||||||+.+++
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 5788988777766554431 1 0 0112289999999999999999997
No 315
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.67 E-value=0.058 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.|.|+.|+||||+++.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 316
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.64 E-value=0.37 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.|+|.||+||||++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998876
No 317
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.60 E-value=0.044 Score=51.56 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.|.|.|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.60 E-value=0.054 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|+|+|..|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.60 E-value=0.065 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 320
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.58 E-value=0.15 Score=53.79 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=65.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcc-eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCccc-ccCCHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD-CHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSEI-EDKNYEMKKII 257 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~ 257 (823)
-.+|+|+|..|.|||||.+.+.. .+..... .++.+.+++ .+.... ......+. ...........
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~t~ed~~--e~~~~~----------~~~~v~q~~~~~~~~~~~~~ 188 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHILTIEDPI--EFVHES----------KKCLVNQREVHRDTLGFSEA 188 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEEEEESSC--CSCCCC----------SSSEEEEEEBTTTBSCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEEEccCcH--Hhhhhc----------cccceeeeeeccccCCHHHH
Confidence 34999999999999999999876 3333222 233444211 110000 00000000 00111223447
Q ss_pred HHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 258 LHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 258 l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
+...|....=+|++|.+-+.+.++.+.... ..|.-|++||-..+.+.
T Consensus 189 La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 189 LRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 888888888899999999887766654442 23667999988776654
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.57 E-value=0.043 Score=53.14 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.|+|+.|+||||+++.+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 322
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.48 E-value=0.074 Score=52.04 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=29.6
Q ss_pred eccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 161 GLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 161 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.++..+.+.+.+... ...+|.|+|.+|+|||||+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3344455555555433 378999999999999999998876
No 323
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.46 E-value=0.062 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.123 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 324
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.45 E-value=0.047 Score=52.64 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++++|+|..|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.44 E-value=0.064 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 326
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.40 E-value=0.22 Score=53.84 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=26.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
..+|+|+|.+|+||||++..+.. .....=..+..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEee
Confidence 67999999999999999999886 3333322344554
No 327
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.38 E-value=0.071 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999976
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.37 E-value=0.06 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999984
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.36 E-value=0.065 Score=51.26 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 330
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.35 E-value=0.11 Score=53.17 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.32 E-value=0.068 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-..|.+.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.32 E-value=0.039 Score=52.40 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
|.|.|+|+.|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999976
No 333
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.31 E-value=0.069 Score=53.96 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999986
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.30 E-value=0.071 Score=55.35 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|+|..|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 367999999999999999999886
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.26 E-value=0.048 Score=51.75 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 336
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.25 E-value=0.078 Score=55.07 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.4
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
....+|||.|..|+||||+|+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999865
No 337
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.25 E-value=0.057 Score=51.31 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=18.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|+|..|+||||++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4778999999999999966554
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.24 E-value=0.061 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999875
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.24 E-value=0.17 Score=49.73 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=30.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCccc---cc-CcceeEEEeCCCCCCCCHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYV---KH-YFDCHAWISEPYSNEYDAD 227 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~~vs~~~~~~ 227 (823)
-.+++|+|..|+|||||++.+...... .. .-..++|+. -...+...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~--~~~~~~~~ 74 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID--TENTFRPE 74 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE--SSSCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE--CCCCCCHH
Confidence 479999999999999999999641111 11 234578887 44444433
No 340
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.15 E-value=0.075 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.-.+|+|.|+.|+||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999986
No 341
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.15 E-value=0.18 Score=53.04 Aligned_cols=40 Identities=8% Similarity=-0.144 Sum_probs=28.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCccccc---CcceeEEEeCCCCCCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKH---YFDCHAWISEPYSNEY 224 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~vs~~~ 224 (823)
-..++|+|..|+|||||++.+.+ .+.. .++ ++++- +.+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~-~I~~l--IGER~ 216 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCV-LMVLL--IDERP 216 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSE-EEEEE--ESSCH
T ss_pred CcEEEEecCCCCChhHHHHHHHH--HHhhcCCCee-EEEEE--ecCCh
Confidence 35899999999999999999876 3322 333 33566 67654
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.15 E-value=0.067 Score=51.35 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|+.|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.13 E-value=0.078 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|+.|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 344
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.07 E-value=0.14 Score=53.41 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=27.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
..++|+|+|.+|+||||++..+.. .....=..+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEe
Confidence 468999999999999999999886 3333323445555
No 345
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.05 E-value=0.097 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|+|..|+||||+++.+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999876
No 346
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.02 E-value=0.07 Score=53.62 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|+|+.|.||||+++.+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.99 E-value=0.057 Score=50.51 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|+.|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 348
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.95 E-value=0.085 Score=52.65 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999976
No 349
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.94 E-value=0.055 Score=50.69 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++++|+|..|.|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 350
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.94 E-value=0.079 Score=51.39 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.88 E-value=0.077 Score=49.34 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 352
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.88 E-value=0.11 Score=55.10 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+.+.+........+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445555554444678999999999999999998864
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.86 E-value=0.1 Score=52.42 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=27.2
Q ss_pred HHHHHHHHHcC---CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEG---PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+.+...+..+ .....+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444444433 23467899999999999999999976
No 354
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.82 E-value=0.09 Score=53.76 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=21.3
Q ss_pred CeEEEEEEecCCchHHHHHHHHh
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAY 201 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~ 201 (823)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999997
No 355
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.82 E-value=0.089 Score=52.60 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|..|.|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999875
No 356
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.82 E-value=0.27 Score=50.56 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=26.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.++|+|+|.+|+||||++..++. .....=..+.++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEec
Confidence 57999999999999999999986 3333222344555
No 357
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.80 E-value=0.076 Score=50.83 Aligned_cols=23 Identities=9% Similarity=0.302 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-++|+|+|..|+|||||++.+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 57899999999999999999986
No 358
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.79 E-value=0.062 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.73 E-value=0.081 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 360
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.69 E-value=0.078 Score=57.15 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=52.2
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccCcc----eeEEEeCCCCCCC-CHHHHHHHHHHHhCCC--------CCCccccc
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHYFD----CHAWISEPYSNEY-DADQIVDIIIKFLMPS--------SRLSEIED 248 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~ 248 (823)
.++|.|..|+|||||+.++.+.... +-+ .++++- +.+.. .+.++.+++.+.=... .+.+....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~--iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r 228 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAA--IGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIER 228 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEE--EEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEE--ecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHH
Confidence 4689999999999999999884332 223 566776 77654 3556666654431111 01000000
Q ss_pred CCHHHHHHHHHHHhc---CCcEEEEEecCCC
Q 003399 249 KNYEMKKIILHEYIM---TKRYLIVIDDVWT 276 (823)
Q Consensus 249 ~~~~~~~~~l~~~L~---~kr~LlVlDdvw~ 276 (823)
.-.....-.+-++++ ++.+||++||+-.
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 001112233455553 6899999999954
No 361
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.66 E-value=0.067 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=16.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 362
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.59 E-value=0.23 Score=52.92 Aligned_cols=110 Identities=13% Similarity=0.206 Sum_probs=60.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeE-EEeCCCCCCCCHHHHHHHHHHHhCCCCC-Cccc-ccCCHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHA-WISEPYSNEYDADQIVDIIIKFLMPSSR-LSEI-EDKNYEMKKI 256 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~vs~~~~~~~~~~~i~~~l~~~~~-~~~~-~~~~~~~~~~ 256 (823)
-.+|+|+|..|.||||+++.+.. .+.......+ ++.+++ .+. +..... .++. -..+......
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~--e~~-----------~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPI--EYV-----------FKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSC--CSC-----------CCCSSSEEEEEEBTTTBSCSHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccH--hhh-----------hccCceEEEeeecCCCHHHHHH
Confidence 56899999999999999999986 3333222333 444211 110 000000 0000 0001112345
Q ss_pred HHHHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 257 ILHEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 257 ~l~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
.+...|....=+|++|.+-+.+......... ..|.-|+.|+-..++..
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 6777777777789999998766544433322 23666888877655433
No 363
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.59 E-value=0.16 Score=55.16 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=33.2
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccCc-ceeEEEeCCCCCCCC-HHHHHHHHH
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHYF-DCHAWISEPYSNEYD-ADQIVDIII 234 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~vs~~~~-~~~~~~~i~ 234 (823)
.++|+|..|+|||||++.+.. .....+ +.++++- +.+... ..++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~--iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAG--VGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEE--ESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEee--eccCchHHHHHHHHhh
Confidence 589999999999999999887 333222 4556666 666642 344544443
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.59 E-value=0.086 Score=50.30 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 365
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.39 E-value=0.15 Score=50.47 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999986
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.38 E-value=0.055 Score=52.66 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999976
No 367
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.38 E-value=0.17 Score=48.27 Aligned_cols=21 Identities=10% Similarity=-0.062 Sum_probs=19.7
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|+|.|..|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.37 E-value=0.096 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|+|.+|+||||+++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999999875
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.36 E-value=0.1 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.013 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 370
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.34 E-value=0.13 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999999875
No 371
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.32 E-value=0.042 Score=58.21 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|.+..++.+...+.... ..-|-|+|..|+|||++|+.+.+
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 568998886665544443322 22388999999999999999987
No 372
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.31 E-value=0.11 Score=50.59 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 373
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.30 E-value=0.089 Score=51.50 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 374
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.29 E-value=0.08 Score=50.49 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++|+|..|+|||||++.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 689999999999999999876
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.15 E-value=0.098 Score=50.75 Aligned_cols=23 Identities=9% Similarity=-0.139 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 376
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.14 E-value=0.11 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.074 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.11 E-value=0.16 Score=51.48 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999975
No 378
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.11 E-value=0.1 Score=56.61 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=35.9
Q ss_pred CCeEeccccHHHHHHHHHcC------------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG------------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.++.++.+...+... ....+-|.++|++|+||||+|+.+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47899998888887766321 11245688999999999999999987
No 379
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.09 E-value=0.12 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999964
No 380
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.07 E-value=0.08 Score=52.95 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|+|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.02 E-value=0.11 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.|.|+.|+||||+|+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 382
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.99 E-value=0.27 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 167 EELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-++++.+..-. .-..++|+|..|+|||+|++.+.+
T Consensus 163 iraID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 163 TRLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred chhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 35566665422 134789999999999999999887
No 383
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.96 E-value=0.12 Score=50.35 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 384
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.93 E-value=0.17 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 385
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.92 E-value=0.078 Score=52.43 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=16.4
Q ss_pred eEEEEEEecCCchHHHHHHHHh-C
Q 003399 180 LSVVVILDSIGLDKTAFAGEAY-N 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~-~ 202 (823)
-.+|+|+|..|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 386
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.91 E-value=0.11 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999976
No 387
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.89 E-value=0.12 Score=53.26 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+++|+|..|+||||+++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999999875
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.83 E-value=0.13 Score=53.34 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|+|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999986
No 389
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.81 E-value=0.11 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998873
No 390
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.77 E-value=0.48 Score=52.11 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=28.4
Q ss_pred CeEeccccHHHHHH----HHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 158 DTVGLDDRMEELLD----LLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 158 ~~vGr~~~~~~l~~----~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+-+...+.++.+. .+..++ ..+.|.|.+|.||||++.++..
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence 34444444444444 444333 3899999999999999999887
No 391
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.73 E-value=0.14 Score=49.90 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...++|.|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999999986
No 392
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.70 E-value=0.12 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 393
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.59 E-value=0.55 Score=50.82 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 378999999999999999988875
No 394
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.58 E-value=0.12 Score=48.45 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++++|+|..|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999987
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.56 E-value=0.13 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 396
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.54 E-value=0.12 Score=49.86 Aligned_cols=23 Identities=13% Similarity=-0.058 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 397
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.53 E-value=0.12 Score=50.29 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 398
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.50 E-value=0.21 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.9
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 357999999999999999999986
No 399
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.46 E-value=0.21 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 400
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.46 E-value=0.11 Score=50.90 Aligned_cols=23 Identities=13% Similarity=-0.106 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 401
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.46 E-value=0.13 Score=51.09 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999873
No 402
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.45 E-value=0.13 Score=49.72 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=20.0
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 403
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.39 E-value=0.21 Score=50.10 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 404
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.28 E-value=0.13 Score=50.06 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 405
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.24 E-value=0.14 Score=51.00 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 406
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.23 E-value=0.15 Score=50.89 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.23 E-value=0.32 Score=49.99 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=34.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcc-eeEEEeCCCCCCCCHHHHHHHHHHHh
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFD-CHAWISEPYSNEYDADQIVDIIIKFL 237 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~vs~~~~~~~~~~~i~~~l 237 (823)
-.+++|+|.+|+|||||++.+.. .+...-. .++|+. ... +..++...+....
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~--~~~~~~G~~v~~~~--~e~--~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQAL--QWGTAMGKKVGLAM--LEE--SVEETAEDLIGLH 87 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH--HHHHTSCCCEEEEE--SSS--CHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HHHHHcCCeEEEEe--CcC--CHHHHHHHHHHHH
Confidence 45899999999999999999886 3332222 466766 332 3455555555544
No 408
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.22 E-value=0.37 Score=61.58 Aligned_cols=99 Identities=18% Similarity=0.013 Sum_probs=61.7
Q ss_pred HHHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCCcc-
Q 003399 168 ELLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMPSSRLSE- 245 (823)
Q Consensus 168 ~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~~~- 245 (823)
.+-.+|. .+=..-+.|-|+|.+|+||||||.++.. +...+=..++|++ +...++... ++.++.+-+.-.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~--~e~~~~~l~-----a~~~G~dl~~l~v 1484 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFID--AEHALDPIY-----ARKLGVDIDNLLC 1484 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEC--TTSCCCHHH-----HHHTTCCTTTCEE
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEE--cccccCHHH-----HHHcCCCchhcee
Confidence 3444454 2223467899999999999999999987 3333334678888 887776665 444542211000
Q ss_pred cccCCHHHHHHHHHHHhc-CCcEEEEEecCC
Q 003399 246 IEDKNYEMKKIILHEYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 246 ~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw 275 (823)
......++....+++..+ .+.-+||+|.+.
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 122234455566665554 467799999994
No 409
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.15 E-value=0.22 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999976
No 410
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.14 E-value=0.14 Score=51.53 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 411
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.13 E-value=0.14 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999976
No 412
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.12 E-value=0.12 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 413
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.12 E-value=0.3 Score=53.26 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=51.5
Q ss_pred EEEEEEecCCchHHHHH-HHHhCCcccccCcc-eeEEEeCCCCCCCC-HHHHHHHHHHHhCCC--------CCCcccccC
Q 003399 181 SVVVILDSIGLDKTAFA-GEAYNSSYVKHYFD-CHAWISEPYSNEYD-ADQIVDIIIKFLMPS--------SRLSEIEDK 249 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~--------~~~~~~~~~ 249 (823)
..++|+|-.|+|||+|| ..+.|. . .-+ .++++- +.+... +.++.+++...=... .+.|.....
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~--IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVA--IGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEE--ESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEE--cCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 46899999999999995 588883 2 244 346777 777653 455666655421111 110000000
Q ss_pred CHHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 250 NYEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 250 ~~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
-.....-.+-+++ +++.+||++||+-..
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 0011122334444 479999999998543
No 414
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.12 E-value=0.14 Score=51.77 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999976
No 415
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.03 E-value=0.15 Score=50.37 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 416
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.02 E-value=0.57 Score=48.88 Aligned_cols=54 Identities=22% Similarity=0.058 Sum_probs=37.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFLMP 239 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 239 (823)
-.++.|.|.+|+||||+|..+... ...+=..++|++ . +-+..++...++.....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fS--l--Ems~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFS--L--EMSAEQLALRALSDLTS 99 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEE--S--SSCHHHHHHHHHHHHHC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEe--C--CCCHHHHHHHHHHHhhC
Confidence 468899999999999999998763 222223566766 3 44567777777665443
No 417
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.02 E-value=0.16 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467889999999999999999874
No 418
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.95 E-value=0.24 Score=50.08 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999976
No 419
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.91 E-value=1.5 Score=43.07 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC-cccccCcc-eeEEEeCCCCCCCCHHHHHHHHHHHhCCCCCC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS-SYVKHYFD-CHAWISEPYSNEYDADQIVDIIIKFLMPSSRL 243 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~-~~~wv~~~vs~~~~~~~~~~~i~~~l~~~~~~ 243 (823)
.++++..+..+ +.+.|.|..|.||||+...+.-+ ........ ..+.+. .....-..++.+.+...++.....
T Consensus 66 q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~--~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 66 ESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVT--QPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp HHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEE--ESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred HHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEe--ccchHHHHHHHHHHHHHhccccCc
Confidence 44555556554 47899999999999866554321 11111221 222222 222222334444444443322100
Q ss_pred ----------------cccccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Q 003399 244 ----------------SEIEDKNYEMKKIILHEYIMTKRYLIVIDDVWT 276 (823)
Q Consensus 244 ----------------~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdvw~ 276 (823)
..+-..+...+...+...+.+- -+||+|.+..
T Consensus 140 ~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~ 187 (235)
T 3llm_A 140 SCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE 187 (235)
T ss_dssp SEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred eEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence 0011235566666666655444 3789999986
No 420
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.90 E-value=0.15 Score=51.09 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 421
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.89 E-value=0.18 Score=46.63 Aligned_cols=23 Identities=4% Similarity=0.112 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.88 E-value=0.15 Score=48.17 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.87 E-value=0.15 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 424
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.85 E-value=0.18 Score=48.20 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 166 MEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 166 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+..++.. -+..+.+.|+|.+|.||||+|.++++
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3445555543 22345799999999999999988887
No 425
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.82 E-value=0.21 Score=49.87 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 426
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.79 E-value=0.17 Score=52.49 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|+|+|-||+||||+|..+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHH
Confidence 578999999999999999988776
No 427
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.79 E-value=0.17 Score=48.28 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567999999999999999998763
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.74 E-value=0.17 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|+|..|+||||+++.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 57999999999999999999876
No 429
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.68 E-value=0.16 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 430
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.63 E-value=0.34 Score=52.92 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=50.4
Q ss_pred EEEEEEecCCchHHHHH-HHHhCCcccccCcc-eeEEEeCCCCCCCC-HHHHHHHHHHHhCC--------CCCCcccccC
Q 003399 181 SVVVILDSIGLDKTAFA-GEAYNSSYVKHYFD-CHAWISEPYSNEYD-ADQIVDIIIKFLMP--------SSRLSEIEDK 249 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~vs~~~~-~~~~~~~i~~~l~~--------~~~~~~~~~~ 249 (823)
..++|+|-.|+|||+|| ..+.|. .. -+ .++++- +.+... +.++.+++...=.. ..+.|.....
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~--iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVA--IGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEE--ESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEE--cCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 46799999999999995 688883 22 34 356677 777653 44444444332111 0111111111
Q ss_pred CHHHHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 250 NYEMKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 250 ~~~~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
-.....-.+-+++ +++.+||++||+-..
T Consensus 238 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 238 LAPYTGAALAEYFMYRERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 1111222233333 589999999998653
No 431
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.62 E-value=0.16 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 432
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.56 E-value=0.18 Score=52.36 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.|+|+.|+||||||..+.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.53 E-value=0.17 Score=49.32 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..|.|.|+.|+||||+|+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999976
No 434
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.47 E-value=0.19 Score=51.53 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 57899999999999999988876
No 435
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.45 E-value=0.18 Score=49.09 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 436
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.42 E-value=0.19 Score=50.89 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=24.6
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
++|+|.|-||+||||+|..+.. .....=..++-|+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEc
Confidence 6888999999999999988875 3332222445554
No 437
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.38 E-value=0.17 Score=50.70 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 438
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.38 E-value=0.17 Score=51.48 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 439
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.33 E-value=0.26 Score=56.37 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCeEeccccHHHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.+..++.+...+..+ ..+.|+|..|+||||||+.+.+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899888888887777765 3889999999999999999987
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.29 E-value=0.18 Score=49.53 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 441
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.17 E-value=0.19 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|.|+|.+|+||||+|..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999998876
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.14 E-value=0.26 Score=46.33 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999874
No 443
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.13 E-value=0.15 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999987
No 444
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.11 E-value=0.3 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+|.|.|+.|+||||+++.+.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.09 E-value=0.2 Score=51.90 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
++|.|+|+.|+||||||+.+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 446
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.97 E-value=1.2 Score=48.56 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHh
Q 003399 167 EELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFL 237 (823)
Q Consensus 167 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l 237 (823)
..+-+++ .+=..-.++.|.|.+|+||||+|..+..+ +...=..++|++ .. -+..++...++...
T Consensus 185 ~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fS--lE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 185 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHS--LE--MGKKENIKRLIVTA 248 (444)
T ss_dssp HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEEC--SS--SCTTHHHHHHHHHH
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEE--CC--CCHHHHHHHHHHHH
Confidence 3344444 33233468999999999999999988763 322223577766 33 33445555555443
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.93 E-value=0.22 Score=45.41 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 448
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.85 E-value=0.18 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999998764
No 449
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.81 E-value=0.49 Score=51.59 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=51.5
Q ss_pred EEEEEEecCCchHHHHH-HHHhCCcccccCcc-eeEEEeCCCCCCCC-HHHHHHHHHHHhCCCCCCcccccCC--HH---
Q 003399 181 SVVVILDSIGLDKTAFA-GEAYNSSYVKHYFD-CHAWISEPYSNEYD-ADQIVDIIIKFLMPSSRLSEIEDKN--YE--- 252 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~--~~--- 252 (823)
..++|+|-.|+|||+|| ..+.|. . .-+ .++++- +.+... +.++.+++.+.=......--....+ ..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~--iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVA--IGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEE--ESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEE--CCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 46799999999999995 578773 2 244 346777 777653 4556666654222111000000011 11
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEecCCCh
Q 003399 253 ---MKKIILHEYI--MTKRYLIVIDDVWTI 277 (823)
Q Consensus 253 ---~~~~~l~~~L--~~kr~LlVlDdvw~~ 277 (823)
...-.+-+++ +++.+||++||+-..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 1112334444 479999999998543
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.77 E-value=0.32 Score=51.72 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 168 ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++-+.-+-+.-.+++|+|..|.|||||++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33443433333457999999999999999999986
No 451
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=88.73 E-value=0.15 Score=55.02 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=51.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccc--------cCcc-eeEEEeCCCCCCC-CHHHHHHHHHHHhCCC--------CC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVK--------HYFD-CHAWISEPYSNEY-DADQIVDIIIKFLMPS--------SR 242 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~--------~~ 242 (823)
..++|.|..|+|||||+.++.+..... ++=+ .++++- +.+.. .+.++.+++.+.=... .+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~--iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAA--MGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEE--EEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEE--ecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 356899999999999999998743331 1111 566666 66654 3445555544321000 01
Q ss_pred CcccccCCHHHHHHHHHHHhc---CCcEEEEEecCCC
Q 003399 243 LSEIEDKNYEMKKIILHEYIM---TKRYLIVIDDVWT 276 (823)
Q Consensus 243 ~~~~~~~~~~~~~~~l~~~L~---~kr~LlVlDdvw~ 276 (823)
.+.....-.....-.+-++++ ++.+||++||+-.
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 000000011112233455553 6899999999954
No 452
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.73 E-value=0.26 Score=46.52 Aligned_cols=24 Identities=4% Similarity=0.079 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.69 E-value=0.21 Score=51.47 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 454
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.67 E-value=0.18 Score=54.67 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=52.7
Q ss_pred EEEEEEecCCchHHHHHHHHhCCcccccC--cceeEEEeCCCCCCC-CHHHHHHHHHHHhCCCC--------CCcccccC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNSSYVKHY--FDCHAWISEPYSNEY-DADQIVDIIIKFLMPSS--------RLSEIEDK 249 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~vs~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~ 249 (823)
..++|+|-.|+|||+|+.++.++....+. =+.++++- +.+.. .+.++.+++...=..+. +.|.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~--iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA--MGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE--EEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE--ccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 45788999999999999999875433211 13566776 67665 35566666654311110 10000000
Q ss_pred CHHHHHHHHHHHhc---CCcEEEEEecCC
Q 003399 250 NYEMKKIILHEYIM---TKRYLIVIDDVW 275 (823)
Q Consensus 250 ~~~~~~~~l~~~L~---~kr~LlVlDdvw 275 (823)
-.....-.+-++++ ++.+||++||+-
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11112233444554 699999999974
No 455
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.64 E-value=0.14 Score=52.64 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=18.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..+|+|.|..|+||||+|+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 456
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.62 E-value=0.22 Score=50.10 Aligned_cols=112 Identities=10% Similarity=0.180 Sum_probs=59.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEE-eCCCCCCCCHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHH
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWI-SEPYSNEYDADQIVDIIIKFLMPSSRLSEIEDKNYEMKKIIL 258 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~~~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 258 (823)
-.+++|+|..|.|||||++.+.. .+...+...+++ .+++...+.-. + .+-.... .. .+.......+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-----~--~~v~q~~---~g-l~~~~l~~~l 91 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-----K--SIVNQRE---VG-EDTKSFADAL 91 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-----S--SEEEEEE---BT-TTBSCHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-----c--eeeeHHH---hC-CCHHHHHHHH
Confidence 56999999999999999999886 333332344443 31121111000 0 0000000 00 0111234556
Q ss_pred HHHhcCCcEEEEEecCCChhhHHHHHhcCCCCCCCcEEEEeeCcchhhh
Q 003399 259 HEYIMTKRYLIVIDDVWTIRMWDVIREILPDNQNGSRVLITLTDIEMVT 307 (823)
Q Consensus 259 ~~~L~~kr~LlVlDdvw~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~ 307 (823)
...|..++=+|++|..-+.+....+.... ..|.-|++||-+.++..
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 66666566788889997655433333221 23667888888766543
No 457
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.52 E-value=0.21 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 458
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.48 E-value=0.21 Score=53.78 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=22.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 459
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.48 E-value=0.2 Score=51.64 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.48 E-value=0.23 Score=50.87 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.|.|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999986
No 461
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.48 E-value=0.46 Score=52.25 Aligned_cols=59 Identities=10% Similarity=0.107 Sum_probs=39.9
Q ss_pred HHHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCC-HHHHHHHH
Q 003399 168 ELLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYD-ADQIVDII 233 (823)
Q Consensus 168 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~-~~~~~~~i 233 (823)
++++.|..-. .=..++|.|..|+|||+|++.+.+. .+-+.++++- +.+... +.++.+++
T Consensus 216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~--iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIG--CGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEE--CCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEE--ecccHHHHHHHHHHH
Confidence 3455554311 1347899999999999999998762 2335788888 888765 44555554
No 462
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.39 E-value=0.39 Score=45.90 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=24.4
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhCC
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
+++.+.-... ..-|+|+|.+|+|||||...+.+.
T Consensus 15 ~l~~~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCC-CcEEEEECCCCCCHHHHHHHHhcC
Confidence 4444433222 345789999999999999999864
No 463
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.35 E-value=0.23 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 464
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.33 E-value=0.23 Score=49.34 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=26.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
-.++.|.|.+|+||||||.++.. .....=..++|++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE
Confidence 45899999999999999988765 2222223677777
No 465
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.31 E-value=0.23 Score=45.40 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 466
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.26 E-value=0.22 Score=51.18 Aligned_cols=24 Identities=4% Similarity=0.134 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999999986
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.25 E-value=0.24 Score=49.09 Aligned_cols=24 Identities=13% Similarity=0.003 Sum_probs=21.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999986
No 468
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.20 E-value=0.24 Score=50.22 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 469
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.16 E-value=0.41 Score=50.38 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=22.0
Q ss_pred CCeEEEEEEecCCchHHHHHHHHhC
Q 003399 178 PQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 178 ~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999999864
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.14 E-value=0.24 Score=50.48 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.++.|+|.+|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999998875
No 471
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.12 E-value=0.37 Score=53.32 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.6
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..++|.|+|.+|+||||++.++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999875
No 472
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.12 E-value=0.25 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHhCC
Q 003399 182 VVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998763
No 473
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.10 E-value=0.24 Score=45.95 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 446899999999999999999764
No 474
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.09 E-value=0.25 Score=46.04 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 475
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.91 E-value=0.26 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+.+++|.|+.|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999999985
No 476
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.89 E-value=0.26 Score=50.42 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999987
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.85 E-value=0.23 Score=53.94 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...+|.|+|+.|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999987
No 478
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.83 E-value=2.1 Score=47.62 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=38.0
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccC-cceeEEEeCCCCCCCCHHHHHHHHHHHhCC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWISEPYSNEYDADQIVDIIIKFLMP 239 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs~~~~~~~~~~~i~~~l~~ 239 (823)
.-.++.|.|.+|+||||||..+..+ .... =..++|++ ... +..++...++....+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~--~a~~~g~~vl~~s--~E~--s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQ--WGTAMGKKVGLAM--LEE--SVEETAEDLIGLHNR 296 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHH--HTTTSCCCEEEEE--SSS--CHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHH--HHHhcCCcEEEEe--ccC--CHHHHHHHHHHHHcC
Confidence 3568899999999999999988763 3322 23577777 433 466777777665443
No 479
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.73 E-value=0.25 Score=45.40 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 445789999999999999998753
No 480
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.71 E-value=0.25 Score=46.75 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998754
No 481
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.70 E-value=0.54 Score=44.99 Aligned_cols=34 Identities=9% Similarity=-0.074 Sum_probs=25.9
Q ss_pred EEEEEecCCchHHHHHHHHhCCcccccCcceeEEEe
Q 003399 182 VVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWIS 217 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 217 (823)
.|.|=|.-|+||||.++.+++ ..+..-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEE
Confidence 377889999999999999988 5555444455555
No 482
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.67 E-value=0.35 Score=45.00 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.7
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
....|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999998764
No 483
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.58 E-value=0.44 Score=50.00 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 169 LLDLLIEGPPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 169 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+++-+.-.-....+++|+|..|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3443433323468999999999999999999874
No 484
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.54 E-value=0.27 Score=45.33 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHhCC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999764
No 485
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.49 E-value=1.5 Score=48.05 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=34.4
Q ss_pred CeEEEEEEecCCchHHHHHHHHhCCcccccC-cceeEEEeCCCCCCCCHHHHHHHHHH
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYNSSYVKHY-FDCHAWISEPYSNEYDADQIVDIIIK 235 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~vs~~~~~~~~~~~i~~ 235 (823)
.-.++.|.|.+|+||||||..+... +... =..++|++ ... +..++...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~--~~~~~g~~Vl~~s--~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQN--VATKTNENVAIFS--LEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH--HHHHSSCCEEEEE--SSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH--HHHhCCCcEEEEE--CCC--CHHHHHHHHHH
Confidence 3468999999999999999998873 3221 12577776 333 34566665543
No 486
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.49 E-value=0.29 Score=46.01 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=19.3
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+.+|+|..|.|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999864
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.48 E-value=0.44 Score=50.12 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999976
No 488
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.42 E-value=1.1 Score=57.47 Aligned_cols=108 Identities=17% Similarity=-0.003 Sum_probs=67.6
Q ss_pred eEeccccHHHHHHHHH-cCCCCeEEEEEEecCCchHHHHHHHHhCCcccccCcceeEEEeCCCCCCCCHHHHHHHHHHHh
Q 003399 159 TVGLDDRMEELLDLLI-EGPPQLSVVVILDSIGLDKTAFAGEAYNSSYVKHYFDCHAWISEPYSNEYDADQIVDIIIKFL 237 (823)
Q Consensus 159 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~vs~~~~~~~~~~~i~~~l 237 (823)
+.+...-...+-.+|. .+=..-+++-|.|.+|+||||||.++.. .....=..++|++ ....++... ++.+
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis--~E~s~~~~~-----a~~l 431 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFID--AEHALDPIY-----ARKL 431 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEEC--TTSCCCHHH-----HHHT
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEE--cCCCHHHHH-----HHHc
Confidence 4444445556666664 3322357999999999999999999887 3333334688988 777666432 4555
Q ss_pred CCCCCCcc-cccCCHHHHHHHHHHHhc-CCcEEEEEecCC
Q 003399 238 MPSSRLSE-IEDKNYEMKKIILHEYIM-TKRYLIVIDDVW 275 (823)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~~l~~~L~-~kr~LlVlDdvw 275 (823)
+...+.-. .+..+.+++...++...+ .+.-+||+|-+.
T Consensus 432 Gvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 432 GVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred CCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 54321100 134456677666665543 456699999874
No 489
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.36 E-value=0.3 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++|.|.|..|+||||||..+.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999986
No 490
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.29 E-value=0.29 Score=47.23 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHhC
Q 003399 182 VVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 182 vi~I~G~gGiGKTtLa~~v~~ 202 (823)
+|.|.|++|+||+|.|+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999987
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.23 E-value=0.33 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999987
No 492
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.15 E-value=0.34 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-+.|.|.|..|+||||||.++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999987
No 493
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.14 E-value=0.28 Score=51.65 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHhC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
-.+++|+|..|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 35899999999999999999976
No 494
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.11 E-value=0.34 Score=56.59 Aligned_cols=46 Identities=28% Similarity=0.252 Sum_probs=35.0
Q ss_pred CCeEeccccHHHHHHHHHcC-----------CCCeEEEEEEecCCchHHHHHHHHhC
Q 003399 157 RDTVGLDDRMEELLDLLIEG-----------PPQLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 157 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
.++.|.++.++++.+.+.-. -...+-|-++|++|.|||.+|+++++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 46778888888877765421 12345578999999999999999998
No 495
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.05 E-value=0.3 Score=45.04 Aligned_cols=24 Identities=21% Similarity=0.095 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 446899999999999999998754
No 496
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.96 E-value=0.22 Score=48.11 Aligned_cols=24 Identities=13% Similarity=-0.051 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
-..|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999998864
No 497
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.93 E-value=0.3 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHhCC
Q 003399 180 LSVVVILDSIGLDKTAFAGEAYNS 203 (823)
Q Consensus 180 ~~vi~I~G~gGiGKTtLa~~v~~~ 203 (823)
..-|.|+|.+|+|||||...+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998754
No 498
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.86 E-value=0.4 Score=44.11 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEEEecCCchHHHHHHHHhC
Q 003399 181 SVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 181 ~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
--|.|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999864
No 499
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=86.85 E-value=1.3 Score=47.71 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=21.7
Q ss_pred CCCeEEEEEE-ecCCchHHHHHHHHhC
Q 003399 177 PPQLSVVVIL-DSIGLDKTAFAGEAYN 202 (823)
Q Consensus 177 ~~~~~vi~I~-G~gGiGKTtLa~~v~~ 202 (823)
....++|+|+ |-||+||||+|..+..
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAH 131 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHH
Confidence 3457899988 8899999999988775
No 500
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=86.83 E-value=0.28 Score=46.87 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.8
Q ss_pred CeEEEEEEecCCchHHHHHHHHhC
Q 003399 179 QLSVVVILDSIGLDKTAFAGEAYN 202 (823)
Q Consensus 179 ~~~vi~I~G~gGiGKTtLa~~v~~ 202 (823)
..--|.|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356789999999999999999854
Done!