Your job contains 1 sequence.
>003400
MKQFFDHSSGPPKIPQLNIPKEVGGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNL
NAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLPDDEDELLAGIMDDFDLR
GLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGT
VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIR
AARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA
YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLML
QLNQELEQDESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSN
HMPGLASILHPQVSTLEKIAPIGKDQGRGSLMEHALTNTISANGASFQQSNSFSEPKIGL
YRGTVSSFGPSPSNGSGVETLSGPQFLWGSPSRYSEHSSSPAWQTSSMGHPFSSNGKIHG
LPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGS
FMVNMGSRASVNPGITVPRNLSDNGSSFRVMSSPRLSPVFLGNGPYPGLTPANIEGLYER
GRSRRIENNNGNQLDSKKQFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHK
GTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQ
GRAALVAHFQNSSLMNEDKRCRPILFHSEGPEAGDQVMQLTFP
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003400
(823 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2013583 - symbol:ML5 "MEI2-like protein 5" spe... 1582 1.7e-162 1
TAIR|locus:2156166 - symbol:ML1 "MEI2-like protein 1" spe... 722 4.5e-139 4
TAIR|locus:2182885 - symbol:ML4 "MEI2-like 4" species:370... 711 9.3e-131 3
TAIR|locus:2117706 - symbol:ML3 "MEI2-like 3" species:370... 1236 7.8e-126 1
TAIR|locus:2045605 - symbol:ML2 "MEI2-like 2" species:370... 1170 7.7e-119 1
TAIR|locus:2090350 - symbol:TEL1 "terminal EAR1-like 1" s... 263 6.9e-52 4
TAIR|locus:2008530 - symbol:TEL2 "terminal EAR1-like 2" s... 262 6.1e-45 3
POMBASE|SPAC27D7.03c - symbol:mei2 "RNA-binding protein i... 378 1.9e-39 3
DICTYBASE|DDB_G0279255 - symbol:DDB_G0279255 species:4468... 248 3.2e-34 3
GENEDB_PFALCIPARUM|PFF1125c - symbol:PFF1125c "RNA-bindin... 306 3.4e-25 1
UNIPROTKB|C6KT70 - symbol:PFF1125c "RNA-binding protein m... 306 3.4e-25 1
DICTYBASE|DDB_G0276005 - symbol:DDB_G0276005 species:4468... 193 1.1e-23 3
DICTYBASE|DDB_G0268266 - symbol:DDB_G0268266 "RNA recogni... 272 1.0e-19 2
DICTYBASE|DDB_G0286611 - symbol:DDB_G0286611 "sulphate an... 247 3.5e-16 2
TAIR|locus:2029647 - symbol:MCT1 "AT1G37140" species:3702... 200 6.8e-15 1
ASPGD|ASPL0000003579 - symbol:AN6494 species:162425 "Emer... 186 1.2e-10 2
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 181 3.4e-10 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 164 1.7e-08 1
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 163 2.0e-08 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 139 2.3e-08 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 164 2.4e-08 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 164 2.4e-08 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 161 2.6e-08 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 162 3.8e-08 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 162 3.8e-08 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 162 3.8e-08 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 136 4.9e-08 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 136 4.9e-08 1
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 150 5.6e-08 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 153 9.9e-08 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 140 1.6e-07 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 140 1.6e-07 2
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 156 1.8e-07 1
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 151 1.8e-07 1
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 151 1.8e-07 1
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 151 1.8e-07 1
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 151 1.9e-07 1
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 151 1.9e-07 1
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 151 1.9e-07 1
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 151 1.9e-07 1
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 151 1.9e-07 1
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 151 1.9e-07 1
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 130 2.1e-07 1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 130 2.1e-07 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 155 2.3e-07 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 155 2.3e-07 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 155 2.3e-07 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 155 2.3e-07 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 148 2.4e-07 1
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 150 2.4e-07 1
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 150 2.5e-07 1
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 150 2.5e-07 1
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 150 2.5e-07 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 149 3.2e-07 1
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 145 3.6e-07 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 148 4.4e-07 1
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p... 146 4.5e-07 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 148 4.5e-07 1
ASPGD|ASPL0000061066 - symbol:AN0421 species:162425 "Emer... 110 5.6e-07 3
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 157 6.1e-07 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 126 6.9e-07 2
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 150 7.9e-07 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 149 1.0e-06 1
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 146 1.1e-06 1
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 146 1.1e-06 1
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 146 1.2e-06 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 143 1.2e-06 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 136 1.3e-06 2
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 133 1.3e-06 2
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 147 1.4e-06 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 147 1.4e-06 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 147 1.4e-06 1
DICTYBASE|DDB_G0279639 - symbol:DDB_G0279639 "RNA-binding... 154 2.0e-06 2
TAIR|locus:2039975 - symbol:RS31a "arginine/serine-rich s... 137 2.4e-06 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 141 2.6e-06 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 155 2.6e-06 2
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 141 3.1e-06 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 136 3.2e-06 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 139 3.3e-06 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 140 3.3e-06 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 143 3.3e-06 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 144 3.6e-06 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 143 3.7e-06 1
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 118 4.1e-06 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 142 4.6e-06 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 127 5.1e-06 2
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 143 5.9e-06 2
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 135 6.4e-06 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 134 7.9e-06 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 125 8.2e-06 2
UNIPROTKB|F1RUT8 - symbol:RBM4B "RNA-binding protein 4B" ... 136 8.5e-06 1
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 120 8.6e-06 2
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 120 8.6e-06 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 120 8.6e-06 2
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 143 9.5e-06 1
UNIPROTKB|C9IZL7 - symbol:NONO "Non-POU domain-containing... 128 1.2e-05 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 135 1.2e-05 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 135 1.3e-05 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 139 1.3e-05 2
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 116 1.4e-05 2
WARNING: Descriptions of 160 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 1582 (562.0 bits), Expect = 1.7e-162, P = 1.7e-162
Identities = 348/676 (51%), Positives = 429/676 (63%)
Query: 17 LNIPKEVGGGSCGRIXXXXXXXX-XXXXXXXXXXXPVLPHEKLNLNAMGLGRQSVDDISS 75
++IP E G+ G + PV P KL L+ G +DD +
Sbjct: 1 MDIPHEAEAGAWGILPGFGRHHHPSSDATLFSSSLPVFPRGKLQLSDNRDGFSLIDD--T 58
Query: 76 GLSKVHHGVASDDPLEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIF 135
+S+ + S D E + +IGN LPD+ED LL G+MDD DL LP D +DYD+F
Sbjct: 59 AVSRTNKFNESADDFE---SHSIGNLLPDEED-LLTGMMDDLDLGELP----DADDYDLF 110
Query: 136 GSGGGMELEGEPQEXXXXXXXXXXXXXXXXGNGLLHYSVPNGAGTVAGEHPYGEHPSRTL 195
GSGGGMEL+ + ++ GN + +++PNGAGTVAGEHPYGEHPSRTL
Sbjct: 111 GSGGGMELDADFRDNLSMSGPPRLSLSSLGGNAIPQFNIPNGAGTVAGEHPYGEHPSRTL 170
Query: 196 FVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 255
FVRNINSNVEDSEL ALFEQYGDIRTLYT CKHRGFVMISYYDIR+AR AMR+LQNKPLR
Sbjct: 171 FVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPLR 230
Query: 256 RRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRH 315
RRKLDIHFSIPKDNPS+KD+NQGTLVVFNLDPS+SN+DL IFGA+GE+KEIRETPHKRH
Sbjct: 231 RRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRH 290
Query: 316 HKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMXXXXXXXXXXXSRILQ 375
HKF+EFYDVR AEAALK+LNR +IAGKRIK+EPSRPGGARR+LM L
Sbjct: 291 HKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSRPGGARRSLMLQLNQDLENDDLHYLP 350
Query: 376 HQVGSPITNSPP--GNWVQFSSPIEHNPLQTI-SKSPNFRNMSPTTSNHMPGLASILHPQ 432
+GSP+ NSPP GNW +SP+E +PLQ++ S+SP F +SPT + H+ GLAS L+ Q
Sbjct: 351 -MIGSPMANSPPMQGNW-PLNSPVEGSPLQSVLSRSPVF-GLSPTRNGHLSGLASALNSQ 407
Query: 433 VSTLEKIAPIGKDQGRGSLMEHALTNTISANGASFQQSNS-FSEPKI-GLYRGTVXXXXX 490
+ K+APIG+ Q I +NG FQQS+ F EPK+ Y G +
Sbjct: 408 GPS-SKLAPIGRGQ-------------IGSNG--FQQSSHLFQEPKMDNKYTGNLSPSGP 451
Query: 491 XXXXXXXVETLSGPQFLWGXXXXXXXXXXXPAWQTSSMGHPFSSNGKIHGLPYSGRQGSF 550
+ETLSG +FLWG W TSS G+P S +P+ + +
Sbjct: 452 LISNGGGIETLSGSEFLWGSPNARSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQ 511
Query: 551 LGSSQHHHVGSAPSGVPLERRFGFLPESPETS-FMNPVAFCGM-GIGQNDGSFMVNMGSR 608
S H HVGSAPSGVPLE+ FGF+PES + + FMN V GM G+G N GSF M +
Sbjct: 512 SRSHHHFHVGSAPSGVPLEKHFGFVPESSKDALFMNTVGLQGMSGMGLNGGSFSSKMANN 571
Query: 609 ASVNPGITVPRNLSDNGSSFRVMSSPRLSPVFLGNGPYPGLTPANIEGLYERGRSRRIEN 668
+N G ++ N SS+R+MSSPR SP+FL +G PG + + LYE GR RR+EN
Sbjct: 572 GIINSG-SMAEN---GFSSYRMMSSPRFSPMFLSSGLNPGRFASGFDSLYENGRPRRVEN 627
Query: 669 NNGNQLDSKK-QFQLE 683
N+ K+ Q LE
Sbjct: 628 NSNQVESRKQFQLDLE 643
Score = 1055 (376.4 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
Identities = 233/447 (52%), Positives = 296/447 (66%)
Query: 378 VGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLE 437
+GSP+ NSPP +Q + P+ ++P++ S + + SP GL+ + +S L
Sbjct: 352 IGSPMANSPP---MQGNWPL-NSPVEG-SPLQSVLSRSPVF-----GLSPTRNGHLSGL- 400
Query: 438 KIAPIGKDQGRGSLMEHALTNTISANGASFQQSNS-FSEPKI-GLYRGTVXXXXXXXXXX 495
A QG S + I +NG FQQS+ F EPK+ Y G +
Sbjct: 401 --ASALNSQGPSSKLAPIGRGQIGSNG--FQQSSHLFQEPKMDNKYTGNLSPSGPLISNG 456
Query: 496 XXVETLSGPQFLWGXXXXXXXXXXXPAWQTSSMGHPFSSNGKIHGLPYSGRQGSFLGSSQ 555
+ETLSG +FLWG W TSS G+P S +P+ + + S
Sbjct: 457 GGIETLSGSEFLWGSPNARSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQSRSHH 516
Query: 556 HHHVGSAPSGVPLERRFGFLPESPETS-FMNPVAFCGM-GIGQNDGSFMVNMGSRASVNP 613
H HVGSAPSGVPLE+ FGF+PES + + FMN V GM G+G N GSF M + +N
Sbjct: 517 HFHVGSAPSGVPLEKHFGFVPESSKDALFMNTVGLQGMSGMGLNGGSFSSKMANNGIINS 576
Query: 614 GITVPRNLSDNG-SSFRVMSSPRLSPVFLGNGPYPGLTPANIEGLYERGRSRRIENNNGN 672
G ++++NG SS+R+MSSPR SP+FL +G PG + + LYE GR RR+ENN+ N
Sbjct: 577 G-----SMAENGFSSYRMMSSPRFSPMFLSSGLNPGRFASGFDSLYENGRPRRVENNS-N 630
Query: 673 QLDSKKQFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDF 732
Q++S+KQFQL+LEKI +GED+RTTLMIKNIPNKYTSKMLLAAIDE ++GTY+FLYLPIDF
Sbjct: 631 QVESRKQFQLDLEKILNGEDSRTTLMIKNIPNKYTSKMLLAAIDEKNQGTYNFLYLPIDF 690
Query: 733 KNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGRAALVAHFQNS 792
KNKCNVGYAFINML+P IIPFYEAFNGKKWEKFNSEKVASLAYARIQG++AL+AHFQNS
Sbjct: 691 KNKCNVGYAFINMLNPELIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNS 750
Query: 793 SLMNEDKRCRPILFHS-EGPEAGDQVM 818
SLMNED RCRPI+F + PE+ +QV+
Sbjct: 751 SLMNEDMRCRPIIFDTPNNPESVEQVV 777
Score = 40 (19.1 bits), Expect = 9.1e-109, Sum P(2) = 9.1e-109
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 8 SSGPPKIPQLNIPKEVG 24
S G IPQ NIP G
Sbjct: 138 SLGGNAIPQFNIPNGAG 154
>TAIR|locus:2156166 [details] [associations]
symbol:ML1 "MEI2-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048507 "meristem development" evidence=IGI] [GO:0045836
"positive regulation of meiosis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:D86122
EMBL:AB022212 EMBL:AY062536 EMBL:BT008806 EMBL:AK316683
IPI:IPI00533512 RefSeq:NP_001032122.1 RefSeq:NP_568946.1
UniGene:At.340 ProteinModelPortal:Q8W4I9 SMR:Q8W4I9 IntAct:Q8W4I9
PaxDb:Q8W4I9 PRIDE:Q8W4I9 EnsemblPlants:AT5G61960.1
EnsemblPlants:AT5G61960.2 GeneID:836317 KEGG:ath:AT5G61960
TAIR:At5g61960 eggNOG:NOG262869 HOGENOM:HOG000030212
InParanoid:Q8W4I9 OMA:HEDIHIT PhylomeDB:Q8W4I9
ProtClustDB:CLSN2687061 Genevestigator:Q8W4I9 GO:GO:0048507
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 Uniprot:Q8W4I9
Length = 915
Score = 722 (259.2 bits), Expect = 4.5e-139, Sum P(4) = 4.5e-139
Identities = 153/270 (56%), Positives = 193/270 (71%)
Query: 553 SSQHHHVGSAPS-GVPL-ERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRAS 610
S HHH+GSAP P +RR ++ ES E+S + + MGI + S +++GS +
Sbjct: 603 SPVHHHIGSAPVLNSPFWDRRQAYVAESLESSGFHIGSHGSMGIPGSSPSHPMDIGSHKT 662
Query: 611 VNPGITVPRNLSDNGSSFRVMSSPR-LSPVFLGNGPYPGLTPANIEGLYERGRS---RRI 666
+ G N D S V+ SP+ LS +F G P G P + + ER R+ RR
Sbjct: 663 FSVG----GNRMDVNSQNAVLRSPQQLSHLFPGRSPM-GSMPGSFDSPNERYRNLSHRRS 717
Query: 667 ENNNGNQLDSKKQFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFL 726
E+++ N KK ++L++++I GED RTTLMIKNIPNKYTSKMLL+AIDE+ KGTYDFL
Sbjct: 718 ESSSSNA--DKKLYELDVDRILRGEDRRTTLMIKNIPNKYTSKMLLSAIDEHCKGTYDFL 775
Query: 727 YLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGRAALV 786
YLPIDFKNKCNVGYAFIN++ P I+PF++AFNGKKWEKFNSEKVA+L YARIQG+ AL+
Sbjct: 776 YLPIDFKNKCNVGYAFINLIEPEKIVPFFKAFNGKKWEKFNSEKVATLTYARIQGKTALI 835
Query: 787 AHFQNSSLMNEDKRCRPILFHSEGPEAGDQ 816
AHFQNSSLMNEDKRCRPILFH++GP AGDQ
Sbjct: 836 AHFQNSSLMNEDKRCRPILFHTDGPNAGDQ 865
Score = 530 (191.6 bits), Expect = 4.5e-139, Sum P(4) = 4.5e-139
Identities = 106/185 (57%), Positives = 135/185 (72%)
Query: 171 HYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG 230
H + G GE GE PSRTL V NI+SNVED EL+ LFEQ+GDI+ L+TACK+RG
Sbjct: 195 HRNGERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRG 254
Query: 231 FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVS 290
F+M+SY DIRAA+ A RALQNK LR KLDI +SI K+NPS KD ++G L+V NLD S+S
Sbjct: 255 FIMVSYCDIRAAQNAARALQNKLLRGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSIS 314
Query: 291 NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350
N++L ++ +YGEVKEIR T H +IEF+DVRAA AAL LN ++AGK+++L P+
Sbjct: 315 NQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTY 374
Query: 351 PGGAR 355
P G R
Sbjct: 375 PEGTR 379
Score = 116 (45.9 bits), Expect = 4.5e-139, Sum P(4) = 4.5e-139
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 66 GRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSS 125
G + +S+ H + LE + IGN LPD ED+L A + + + ++
Sbjct: 109 GSDMLSTMSANTVVTHREEEPSESLEEIEAQTIGNLLPD-EDDLFAEVTGEVGRKSRANT 167
Query: 126 LEDLEDYDIFGSGGGMELEGE 146
++L+++D+F S GGMEL+G+
Sbjct: 168 GDELDEFDLFSSVGGMELDGD 188
Score = 42 (19.8 bits), Expect = 1.1e-84, Sum P(3) = 1.1e-84
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 435 TLEKIAPIGKDQGRGSLMEHALTNTISANGASFQQSNSFSEPK 477
++ K P KD +G+L+ + L ++IS N + S+ E K
Sbjct: 288 SISKENPSQKDTSKGALLVNNLDSSIS-NQELNRLVKSYGEVK 329
Score = 40 (19.1 bits), Expect = 4.5e-139, Sum P(4) = 4.5e-139
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 372 RILQHQVGSPITNSPPGNWVQFSSPIEHNPLQ---TISKSPNFRNMSPTTSNHMPGLASI 428
R++ + +GSP+ NS S PI P + SK + N G+ S+
Sbjct: 425 RVIHNSIGSPV-NSFIERHRSLSIPIGFPPSANGISASKPVGLQEHGHHFDNSNMGIQSM 483
Query: 429 --LHP 431
LHP
Sbjct: 484 PNLHP 488
>TAIR|locus:2182885 [details] [associations]
symbol:ML4 "MEI2-like 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
[GO:0048507 "meristem development" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL163652 GO:GO:0003723
eggNOG:NOG262869 HOGENOM:HOG000030212 ProtClustDB:CLSN2687061
GO:GO:0048507 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AK226960 IPI:IPI00536095 PIR:T48500 RefSeq:NP_196346.1
UniGene:At.5054 ProteinModelPortal:Q9LYN7 SMR:Q9LYN7 PaxDb:Q9LYN7
PRIDE:Q9LYN7 EnsemblPlants:AT5G07290.1 GeneID:830620
KEGG:ath:AT5G07290 TAIR:At5g07290 InParanoid:Q9LYN7 OMA:HEDIRIT
PhylomeDB:Q9LYN7 Genevestigator:Q9LYN7 Uniprot:Q9LYN7
Length = 907
Score = 711 (255.3 bits), Expect = 9.3e-131, Sum P(3) = 9.3e-131
Identities = 153/270 (56%), Positives = 190/270 (70%)
Query: 553 SSQHHHVGSAPS-GVPL-ERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRAS 610
S HHH+GSAP P +RR ++ ESPE+S + + MG + S ++ GS
Sbjct: 600 SPVHHHIGSAPVLNSPFWDRRQAYVAESPESSGFHLGSPGSMGFPGSSPSHPMDFGSHKV 659
Query: 611 VNPGITVPRNLSDNGSSFRVMSSPRLSP-VFLGNGPYPGLTPANIEGLYERGRS---RRI 666
+ V N + S V+ S R P +F G P ++ + + ER R+ RR
Sbjct: 660 FSH---VGGNRMEANSKNAVLRSSRQMPHLFTGRSPMLSVS-GSFDLPNERYRNLSHRRS 715
Query: 667 ENNNGNQLDSKKQFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFL 726
E+N+ N KK ++L++++I GED+RTTLMIKNIPNKYTSKMLLAAIDE KGTYDFL
Sbjct: 716 ESNSSNA--EKKLYELDVDRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEYCKGTYDFL 773
Query: 727 YLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGRAALV 786
YLPIDFKNKCNVGYAFIN++ P +I+PFY+AFNGKKWEKFNSEKVASLAY RIQG++AL+
Sbjct: 774 YLPIDFKNKCNVGYAFINLIEPENIVPFYKAFNGKKWEKFNSEKVASLAYGRIQGKSALI 833
Query: 787 AHFQNSSLMNEDKRCRPILFHSEGPEAGDQ 816
AHFQNSSLMNEDKRCRPILFH+ GP AGDQ
Sbjct: 834 AHFQNSSLMNEDKRCRPILFHTAGPNAGDQ 863
Score = 501 (181.4 bits), Expect = 9.3e-131, Sum P(3) = 9.3e-131
Identities = 97/178 (54%), Positives = 133/178 (74%)
Query: 176 NGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMIS 235
+ TVA EHP GE SR LFVRN++S++ED EL LF+Q+GD+R L+TA K+RGF+M+S
Sbjct: 195 SNVSTVA-EHPQGEILSRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVS 253
Query: 236 YYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLR 295
YYDIRAA+ A RAL + LR RKLDI +SIPK+NP + ++G L V NLD S+SNE+L
Sbjct: 254 YYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPKENS-SEGALWVNNLDSSISNEELH 312
Query: 296 QIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
IF +YGE++E+R T H+ +IEF+DVR A+ AL+ LN ++AG+++KL P+ P G
Sbjct: 313 GIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCPEG 370
Score = 106 (42.4 bits), Expect = 9.3e-131, Sum P(3) = 9.3e-131
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 88 DPLEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGE 146
+ LE + IGN LPD ED+L A ++ + + + +DL+D D+F S GGMEL+G+
Sbjct: 124 ESLEEMEAQTIGNLLPD-EDDLFAEVVGEGVHKSRANGGDDLDDCDLFSSVGGMELDGD 181
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 294/642 (45%), Positives = 382/642 (59%)
Query: 51 PVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVAS--DDPLEGVMNPAIGNSLPDDEDE 108
P++ H+ N+N QSVD+++SGL G+ + DD G +P IGN LPDDE+E
Sbjct: 28 PLIQHQ--NINPRDSYHQSVDEMASGLDHFSGGIGNMLDD---GDSHP-IGNMLPDDEEE 81
Query: 109 LLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQEXXXXXXXXXXXXXXXXGNG 168
L +G+MDD +L LP++L+DLEDYD+FGSGGG+ELE +P + N
Sbjct: 82 LFSGLMDDLNLSSLPATLDDLEDYDLFGSGGGLELETDPYDSLNKGFSRMGFADSNVDNV 141
Query: 169 LLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKH 228
+ NG G++AGEHPYGEHPSRTLFVRNINSNVEDSEL+ALFEQYG IRTLYTACK
Sbjct: 142 MPQNIFQNGVGSIAGEHPYGEHPSRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQ 201
Query: 229 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPS 288
RGFVM+SY DIRA+R AMRALQ K L++RKLDIHFSIPKDNPS+KD+NQGTLVVFNL PS
Sbjct: 202 RGFVMVSYNDIRASRAAMRALQGKLLKKRKLDIHFSIPKDNPSEKDVNQGTLVVFNLAPS 261
Query: 289 VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348
VSN DL IFG YGE+KEIRETP+KRHHKF+EF+DVR+A+AALK+LNR++IAGKRIKLE
Sbjct: 262 VSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEH 321
Query: 349 SRPGGARRNLMXXXXXXXXXXXSRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKS 408
SRPGGARRN+M S + V SP+ +SP GNW +SPI+H PLQ+ SKS
Sbjct: 322 SRPGGARRNMMLQMNPELEQDDSYSYLNHVESPLASSPIGNWR--NSPIDH-PLQSFSKS 378
Query: 409 PNFRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQ-GRG-SLMEHALTNTISANGAS 466
P F N+SPT + I +P+ S K A + DQ GR S ++H +++ S N AS
Sbjct: 379 PIFGNLSPTKN--------IRYPEFSM--KTASVNNDQEGRRFSHLDHLFSSS-SYNNAS 427
Query: 467 FQQSNSFSEPKIGLYRGTVXXXXXXXXXXXXVETLSGPQFLWGXXXXXXXXXXXPAWQTS 526
+ S +F +P+ G+V VETLSG +FLWG +
Sbjct: 428 HKAS-TFQQPQSF---GSVSSFGSLNSHPSHVETLSGSEFLWGSPSSSAWPVNPFSSNRE 483
Query: 527 SMGHPFSS-NGKIHGLPYSGR--QGSFLGSSQHHHVGS-----APSGVPLERRFGFLPES 578
+ P+S+ NG +H L + G G F S + +GS A + +R L E+
Sbjct: 484 NHRFPYSAQNGSLHQLHHIGSAPSGFFPRSPETSSMGSVAFRGASGNMNAQRN---LRET 540
Query: 579 PETSFMNPVAFCGMGIGQNDGSFMVNMGSRASVNPGITVPRN--LSDNGSS--FRVMSSP 634
+F A + +GS++ + S++ + N NG+ ++
Sbjct: 541 SSPNFKMLSAPRRSQLFTGNGSYLWPAATMVSIDDPLEDGSNQQFDSNGNQADIKIQFQL 600
Query: 635 RLSPVFLGNGPYPGLTPANIEGLYERGRS-RRIENNNGNQLD 675
LS + G P L NI Y R I+ N D
Sbjct: 601 DLSKIMRGEDPRTTLMIKNIPNKYTRNMLLAAIDEKNSGTYD 642
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 137/215 (63%), Positives = 165/215 (76%)
Query: 604 NMGSRA--SVNPGITVPRNLSDNGS-SFRVMSSPRLSPVFLGNGPY--PGLTPANIEGLY 658
+MGS A + + RNL + S +F+++S+PR S +F GNG Y P T +I+
Sbjct: 518 SMGSVAFRGASGNMNAQRNLRETSSPNFKMLSAPRRSQLFTGNGSYLWPAATMVSIDDPL 577
Query: 659 ERGRSRRIENNNGNQLDSKKQFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDEN 718
E G +++ ++N GNQ D K QFQL+L KI GED RTTLMIKNIPNKYT MLLAAIDE
Sbjct: 578 EDGSNQQFDSN-GNQADIKIQFQLDLSKIMRGEDPRTTLMIKNIPNKYTRNMLLAAIDEK 636
Query: 719 HKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYAR 778
+ GTYDFLYLPIDFKNKCNVGYAFINM+SP I YEAFNGKKW+KFNSEKVASLAYAR
Sbjct: 637 NSGTYDFLYLPIDFKNKCNVGYAFINMVSPKFTIALYEAFNGKKWDKFNSEKVASLAYAR 696
Query: 779 IQGRAALVAHFQNSSLMNEDKRCRPILFHSEGPEA 813
IQG+AAL+AHFQNSSLMNED+RC+PI+F +G E+
Sbjct: 697 IQGKAALIAHFQNSSLMNEDRRCQPIVF--DGSES 729
>TAIR|locus:2045605 [details] [associations]
symbol:ML2 "MEI2-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 GO:GO:0045927 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HOGENOM:HOG000030212
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AF101056
EMBL:AC006580 EMBL:AC006931 EMBL:AF367316 EMBL:AY143940
IPI:IPI00546291 PIR:E84859 RefSeq:NP_565990.1 UniGene:At.25505
ProteinModelPortal:Q9SJG8 SMR:Q9SJG8 STRING:Q9SJG8 PaxDb:Q9SJG8
PRIDE:Q9SJG8 EnsemblPlants:AT2G42890.1 GeneID:818890
KEGG:ath:AT2G42890 TAIR:At2g42890 eggNOG:NOG266727
InParanoid:Q9ASS1 OMA:DANDHEQ PhylomeDB:Q9SJG8
ProtClustDB:CLSN2688901 Genevestigator:Q9SJG8 Uniprot:Q9SJG8
Length = 843
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 263/587 (44%), Positives = 342/587 (58%)
Query: 51 PVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLPDDEDELL 110
P L HEKLN+ S D+ S L+K+ G + D LE V A+ LP+DE+ELL
Sbjct: 57 PTLFHEKLNMTDSD-SWLSFDESSPNLNKLVIGNSEKDSLEDVEPDALEILLPEDENELL 115
Query: 111 AGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQEXXXXXXXXXXXXXXXXGNGLL 170
G++D+ + GLP L+DLE+ D+F +GGGMEL+ E Q+ N +
Sbjct: 116 PGLIDELNFTGLPDELDDLEECDVFCTGGGMELDVESQDNHAVDASGMQISDRGAANAFV 175
Query: 171 HYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG 230
PN AG V+ EHP GEHPSRTLFVRNINS+VEDSEL ALFE +G+IR+LYTACK RG
Sbjct: 176 PRKRPNTAGRVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRG 235
Query: 231 FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVS 290
FVMISYYDIRAA AMRALQN LR+R LDIHFSIPK+NPS+KD+NQGTLV+FN+D +VS
Sbjct: 236 FVMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVS 295
Query: 291 NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350
N++L Q+FGAYGE++EIRETP++R H+FIE+YDVR AE ALK+LNRS+I GK IKLE SR
Sbjct: 296 NDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSR 355
Query: 351 PGGARRNLMXXXXXXXXXXXSRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPN 410
PGGARR + +QVGS + NSPPGNW SP++ +P ++
Sbjct: 356 PGGARRLSVPSQSQDLERTEVTNFYNQVGSHVANSPPGNW-PIGSPVKGSPSHAFTRPHG 414
Query: 411 FRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQGRGSLMEHALTNTISANGASFQQS 470
+ P S++MPGLASIL S+ +P+ DQG + + N + S+ Q
Sbjct: 415 LGMVRPVNSDNMPGLASILPAHPSSFHGFSPVSNDQGLLNHSNQTILNKGLMHNISYGQP 474
Query: 471 NSFSEPKIGLYRGTVXXXXXXXXXXXXVETLSGPQFLWGX--XXXXXXXXXXPAWQTSSM 528
+S E G G T S ++ WG + +SS
Sbjct: 475 HSLPEHITG---GISNSMRFIAPHSSGFGTSSDHRYRWGSPPQHMNYPGYTGVSSSSSST 531
Query: 529 GHPFSSNGKIHGLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVA 588
PF+ HG P++ RQ S LG QHH VGSAPS + + SPE P+
Sbjct: 532 ERPFTVR---HGFPFAERQASLLGKYQHH-VGSAPSSIHFNTQMNCYTGSPEI----PLG 583
Query: 589 FCGMGIGQNDGSFMVNMGSRASVNPGITVPRNLSDNG-SSFRVMSSP 634
F MGI +N S + N G+++P N S+ + F + S P
Sbjct: 584 FSDMGINRNYNS------AHGKANLGVSLPGNSSEQDFTGFGMSSMP 624
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 134/279 (48%), Positives = 176/279 (63%)
Query: 539 HGLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQND 598
HG P++ RQ S LG QHH VGSAPS + + SPE P+ F MGI +N
Sbjct: 539 HGFPFAERQASLLGKYQHH-VGSAPSSIHFNTQMNCYTGSPEI----PLGFSDMGINRNY 593
Query: 599 GSFMVNMGSRASVNPGITVPRNLSDNG-SSFRVMSSPRLSPVFLGNGPYPGLTPANIEGL 657
S + N G+++P N S+ + F + S P + P F G+ GL E
Sbjct: 594 NS------AHGKANLGVSLPGNSSEQDFTGFGMSSMPTV-P-FGGSR---GLQSVRPEPF 642
Query: 658 YERGRSRRIENNNGNQLDSKKQFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDE 717
E+GR E++N NQ ++ ++L++I SG++ RTTL+IKNIPNKYT KML+A IDE
Sbjct: 643 AEQGRIHNHESHNQNQFIDGGRYHIDLDRIASGDEIRTTLIIKNIPNKYTYKMLVAEIDE 702
Query: 718 NHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYA 777
HKG YDFL LP DFKNKCN+G+AFINM+SPLHI+PF + FNGK WEKFNS KVASLAYA
Sbjct: 703 KHKGDYDFLCLPTDFKNKCNMGHAFINMVSPLHIVPFQQTFNGKIWEKFNSGKVASLAYA 762
Query: 778 RIQGRAALVAHFQNSSLMNEDKRCRP-ILFHSEGPEAGD 815
IQG++AL ++ Q S M E K+ P + +H +G +A D
Sbjct: 763 EIQGKSALASYMQTPSSMKEQKQLFPEVSYHDDGQDAND 801
>TAIR|locus:2090350 [details] [associations]
symbol:TEL1 "terminal EAR1-like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
IPI:IPI00518069 RefSeq:NP_189242.1 UniGene:At.53499
ProteinModelPortal:F4JBE2 SMR:F4JBE2 PRIDE:F4JBE2
EnsemblPlants:AT3G26120.1 GeneID:822211 KEGG:ath:AT3G26120
OMA:NSRKICQ ArrayExpress:F4JBE2 Uniprot:F4JBE2
Length = 615
Score = 263 (97.6 bits), Expect = 6.9e-52, Sum P(4) = 6.9e-52
Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 322
F +P + NQGTLV+FNLDP VS+ LRQIF YG +KE+RETP+K+H +F+EFY
Sbjct: 198 FVVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFY 257
Query: 323 DVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355
DVR A A +N +I GK++ +E SRPGG +
Sbjct: 258 DVRDAARAFDRMNGKEIGGKQVVIEFSRPGGIK 290
Score = 249 (92.7 bits), Expect = 6.9e-52, Sum P(4) = 6.9e-52
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 716 DENHK--GTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 773
+ +H+ +YDF+YLP+DF NKCNVGY F+NM SP FY+AF+G++WE FNS K+
Sbjct: 447 ESHHQPYSSYDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVFNSHKICQ 506
Query: 774 LAYARIQGRAALVAHFQNSSLMNEDKRCRPILFHSEGPEAGDQVMQ 819
+ YAR+QG L HF++S E + P++F P G Q+ +
Sbjct: 507 ITYARVQGLEDLKEHFKSSKFPCEAELYLPVVFSP--PRDGKQLTE 550
Score = 99 (39.9 bits), Expect = 6.9e-52, Sum P(4) = 6.9e-52
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 679 QFQLELEKIR--SGEDTRTTLMIKNIPNKYTSKMLLAAIDEN 718
QF + E + S D RTTLMIKNIPNKY+ K+LL +D++
Sbjct: 390 QFLISEETMEDPSCRDPRTTLMIKNIPNKYSQKLLLDMLDKH 431
Score = 96 (38.9 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC--KHRGFVMISYYDIRAARTAMRALQN 251
TL + N++ V LR +F+ YG I+ L KH+ FV +YD+R A A +
Sbjct: 214 TLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFV--EFYDVRDAARAFDRMNG 271
Query: 252 KPLRRRKLDIHFSIP 266
K + +++ I FS P
Sbjct: 272 KEIGGKQVVIEFSRP 286
Score = 95 (38.5 bits), Expect = 6.9e-52, Sum P(4) = 6.9e-52
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 250
P+R+L + ++ +V +S +R E YGD+R + G V + +YDIR A+ A+R +
Sbjct: 104 PTRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVC 163
Query: 251 NKPLRRR 257
+ ++++
Sbjct: 164 GRHMQQQ 170
Score = 56 (24.8 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 21/110 (19%), Positives = 48/110 (43%)
Query: 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338
+L + ++ V+ +R+ YG+V+ ++ + FYD+R A+ A++ +
Sbjct: 107 SLSLISVPRDVTESTVRRDLEVYGDVRGVQMERISEGIVTVHFYDIRDAKRAVR-----E 161
Query: 339 IAGKRIKLEPSRPGGARRNLMXXXXXXXXXXXSRILQHQVGSPITNSPPG 388
+ G+ ++ + +R G + R + Q P T++ PG
Sbjct: 162 VCGRHMQ-QQARGGSVWSS--PSTSSARGFVSGRPVWAQFVVPATSAVPG 208
Score = 39 (18.8 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 381 PITNSPPGNWVQFSSPIEHN 400
P+ SPP + Q + P+ N
Sbjct: 536 PVVFSPPRDGKQLTEPVSIN 555
>TAIR|locus:2008530 [details] [associations]
symbol:TEL2 "terminal EAR1-like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201 Pfam:PF04059
EMBL:AC008113 HSSP:P09012 EMBL:DQ446408 IPI:IPI00539717
RefSeq:NP_176943.1 UniGene:At.52426 ProteinModelPortal:Q9FXE0
SMR:Q9FXE0 PRIDE:Q9FXE0 EnsemblPlants:AT1G67770.1 GeneID:843102
KEGG:ath:AT1G67770 TAIR:At1g67770 eggNOG:NOG320075
HOGENOM:HOG000090865 InParanoid:Q9FXE0 OMA:NEIRYRH PhylomeDB:Q9FXE0
ProtClustDB:CLSN2914477 Genevestigator:Q9FXE0 Uniprot:Q9FXE0
Length = 527
Score = 262 (97.3 bits), Expect = 6.1e-45, Sum P(3) = 6.1e-45
Identities = 59/132 (44%), Positives = 78/132 (59%)
Query: 692 DTRTTLMIKNIPNKYTSKMLLAAID------------ENHK---GTYDFLYLPIDFKNKC 736
D RTT+MIKNIPNKYT K+LL +D E +K +YDF+YLPIDF NK
Sbjct: 334 DGRTTVMIKNIPNKYTQKLLLKMLDTHCKDCNQSVIKEGNKTPMSSYDFVYLPIDFSNKS 393
Query: 737 NVGYAFINMLSPLHIIPFYEAFNGKKWEKFNS-EKVASLAYARIQGRAALVAHFQNSSLM 795
NVGY F+NM SP + Y++F+ + W F + K+ + YARIQG +L HF+N L
Sbjct: 394 NVGYGFVNMTSPEAVWRLYKSFHNQHWRDFTTTRKICEVTYARIQGLESLREHFKNVRLA 453
Query: 796 N-EDKRCRPILF 806
E P++F
Sbjct: 454 GVEIDEYMPVVF 465
Score = 246 (91.7 bits), Expect = 6.1e-45, Sum P(3) = 6.1e-45
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 262 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEF 321
HF P+ N + NQG+LV+ NL+P+VS+ LR IF YGEVK++RETP KR +F+EF
Sbjct: 167 HFVFPQLNAVPEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEF 226
Query: 322 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNL 358
+DVR A AL+ +N I+GK + ++ SRPGG + L
Sbjct: 227 FDVRDAAKALRVMNGKVISGKPMVIQFSRPGGLTKKL 263
Score = 108 (43.1 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACKHRGFVMISYYDIRAART 244
P G + +L + N+ V S LR +F+ YG+++ + T CK R + ++D+R A
Sbjct: 177 PEGNNQG-SLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCK-REQRFVEFFDVRDAAK 234
Query: 245 AMRALQNKPLRRRKLDIHFSIP 266
A+R + K + + + I FS P
Sbjct: 235 ALRVMNGKVISGKPMVIQFSRP 256
Score = 86 (35.3 bits), Expect = 6.1e-45, Sum P(3) = 6.1e-45
Identities = 16/78 (20%), Positives = 41/78 (52%)
Query: 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTA 245
P P+R + + + + V ++ LR E +G++R + H G V+ +Y++ ++ A
Sbjct: 73 PTSVTPTRAVMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIFHFYNLINSQRA 132
Query: 246 MRALQNKPLRRRKLDIHF 263
++ + +++++ HF
Sbjct: 133 FNEIRYRHMQQQEQQQHF 150
Score = 40 (19.1 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIR-ETPHKRHHKFIEFYDVRAAEAALKSL 334
+++ + +V+ LR+ +GEV+ ++ E H+ F FY++ ++ A +
Sbjct: 82 VMLLQVPATVTETSLRRDMELFGEVRGVQMERAHEGIVIF-HFYNLINSQRAFNEI 136
>POMBASE|SPAC27D7.03c [details] [associations]
symbol:mei2 "RNA-binding protein involved in meiosis
Mei2" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=IDA] [GO:0004860 "protein kinase inhibitor
activity" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007127 "meiosis I" evidence=TAS] [GO:0033620
"Mei2 nuclear dot" evidence=IDA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IDA] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC27D7.03c GO:GO:0005829
EMBL:CU329670 GO:GO:0006950 GenomeReviews:CU329670_GR GO:GO:0000166
GO:GO:0004860 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0007127
eggNOG:NOG262869 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:X07180 PIR:S00391 RefSeq:NP_594609.1 ProteinModelPortal:P08965
STRING:P08965 EnsemblFungi:SPAC27D7.03c.1 GeneID:2542080
KEGG:spo:SPAC27D7.03c OMA:IMETESP OrthoDB:EOG41ZJK1
NextBio:20803153 GermOnline:SPAC27D7.03c GO:GO:0033620
GO:GO:0034064 Uniprot:P08965
Length = 750
Score = 378 (138.1 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 76/142 (53%), Positives = 98/142 (69%)
Query: 682 LELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYA 741
++ +I SG DTRTT+MIKNIPNK+T +ML ID +KGTYDFLYL IDF NKCNVGYA
Sbjct: 584 VDYAQIASGIDTRTTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYA 643
Query: 742 FINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGRAALVAHFQNSSLMNEDKRC 801
FIN + P II F +A G +W F+SEK+ ++YA IQG+ L+ F+NS +M+E+
Sbjct: 644 FINFIEPQSIITFGKARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDENPAY 703
Query: 802 RPILFHSEGPEAGDQVMQLTFP 823
RP +F S GP G M+ FP
Sbjct: 704 RPKIFVSHGPNRG---MEEPFP 722
Score = 120 (47.3 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 44/161 (27%), Positives = 78/161 (48%)
Query: 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHR-GFVMISYYDIRAARTAMRA 248
H SR LFV N+ V + L LF + GD++ + T+ G +++++DIR A A ++
Sbjct: 192 HASRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKS 251
Query: 249 LQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPS-------------VSNEDLR 295
L+++ +L ++F + + K +NQG + F LD + +S L+
Sbjct: 252 LRSQRFFNDRL-LYFQFCQRSSIQKMINQGATIQF-LDDNEGQLLLNMQGGSVLSILQLQ 309
Query: 296 QIFGAYGEVKEIRETPHKRHHKFI-EFYDVRAAEAALKSLN 335
I +G + ++ + + I EFYD R A AL L+
Sbjct: 310 SILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELD 350
Score = 61 (26.5 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 30/110 (27%), Positives = 42/110 (38%)
Query: 239 IRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGT---LVVFNLDPSVSNEDLR 295
I ++ A +AL KP S N D D+ L V NL V L
Sbjct: 156 ISSSEQAAQALTRKP---SVTGFRSSSLNSNSDDIDIFSHASRYLFVTNLPRIVPYATLL 212
Query: 296 QIFGAYGEVKEIRETPHKRHHK-FIEFYDVRAAEAALKSLNRSDIAGKRI 344
++F G+VK I + + F+D+R A A KSL R+
Sbjct: 213 ELFSKLGDVKGIDTSSLSTDGICIVAFFDIRQAIQAAKSLRSQRFFNDRL 262
Score = 42 (19.8 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 380 SPITNSPPGNWVQFSSPIEHNPLQTISKSPN---FRNMS 415
S ++ SPP N +Q Q +++ P+ FR+ S
Sbjct: 141 SVLSESPPQNGIQSYISSSEQAAQALTRKPSVTGFRSSS 179
Score = 41 (19.5 bits), Expect = 1.9e-39, Sum P(3) = 1.9e-39
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 378 VGSPITNSPPGNWVQFSSPIEHNPL--QTISKS---P--NFRNMSPTTSNHMPGLASILH 430
VG+ + S P N + F+S H+ T+S S P N + +PT H S+ +
Sbjct: 528 VGANASCSNPTN-LSFASLTLHDSKADSTLSASSLNPDLNLQRYTPTVEKHASDRNSVDY 586
Query: 431 PQVST 435
Q+++
Sbjct: 587 AQIAS 591
Score = 38 (18.4 bits), Expect = 4.0e-39, Sum P(3) = 4.0e-39
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 455 ALTNTISANGASFQQSNSFSEPKIG 479
A + +S G+S+ SN+F +G
Sbjct: 410 AASCAVSRIGSSYGMSNNFGSVPLG 434
>DICTYBASE|DDB_G0279255 [details] [associations]
symbol:DDB_G0279255 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0279255
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR007201
Pfam:PF04059 EMBL:AAFI02000030 RefSeq:XP_641754.1
ProteinModelPortal:Q54X23 EnsemblProtists:DDB0205680 GeneID:8621952
KEGG:ddi:DDB_G0279255 InParanoid:Q54X23 ProtClustDB:CLSZ2846744
Uniprot:Q54X23
Length = 1698
Score = 248 (92.4 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 48/102 (47%), Positives = 67/102 (65%)
Query: 685 EKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFIN 744
E I SG DTRT+LMI+NIPN+ T + L A IDE K TYDFL +P+D K + GYAFIN
Sbjct: 1564 ENIISGVDTRTSLMIRNIPNRLTQQTLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFIN 1623
Query: 745 MLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGRAALV 786
+++ F++ F +W+ +N +K+ + YA IQG AL+
Sbjct: 1624 FKDHMNVYRFHQKFFHTRWKNYNHDKICEINYAIIQGEEALL 1665
Score = 231 (86.4 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 67/225 (29%), Positives = 114/225 (50%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG-FVMISYYDIRAARTAMR 247
E PSR LF+++I + + ++ E G I ++Y + K++G F++ISY DIR + A
Sbjct: 911 ESPSRYLFIKSIRG-INHNLFKSKIESIGQINSVYGSIKNKGGFLIISYLDIRHSIEAFN 969
Query: 248 ALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVV-FNLDPSVSNEDLRQIFGAYGEVKE 306
LQ KL +++ KD DK GTL+ F+ D + N + F +GE+K+
Sbjct: 970 ELQKVDFGS-KLIVNYCFDKDQTVDK----GTLIATFSNDDQIKN--IVNDFSKFGEIKD 1022
Query: 307 IRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMXXXXXXX 366
IR++P+K KF+EFY++ + A+ +LN SD +IK+ S GG+ ++L+
Sbjct: 1023 IRDSPNKPLQKFVEFYNINSTLKAINNLN-SD----KIKVAFSHHGGSSKDLIKLNSTEA 1077
Query: 367 XXXXSRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNF 411
+ H + S+P + +I+KSP+F
Sbjct: 1078 F----NVTTHYFNGTYLPTTTTTTATASTPTS-TQVNSITKSPSF 1117
Score = 51 (23.0 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 22/75 (29%), Positives = 33/75 (44%)
Query: 612 NPGITVPRNLSDNGSSFRVMSS--PRLSPVFLG--NGPY-PGLTPANIEGLYERGRSRRI 666
N G +N ++N SF ++ S ++SP N Y P TP S I
Sbjct: 15 NDGNNNNKN-NNNSRSFGIIGSGLSQVSPSSSTSTNRHYSPSSTPPQNNNDKINNVSGGI 73
Query: 667 ENNNGNQLDSKKQFQ 681
NNNGN + ++ +Q
Sbjct: 74 NNNNGNTIKNQTNYQ 88
Score = 46 (21.3 bits), Expect = 3.8e-15, Sum P(3) = 3.8e-15
Identities = 16/69 (23%), Positives = 24/69 (34%)
Query: 223 YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVV 282
Y+ G ++ ++I R + NK L H+ P S LN V
Sbjct: 272 YSPKNSNGSGALNNHEIEQKRNSYDGFGNKTLFSSSTSTHYQSPSSLSSAGSLNSPKSQV 331
Query: 283 FNLDPSVSN 291
L S +N
Sbjct: 332 SRLSSSDNN 340
Score = 42 (19.8 bits), Expect = 9.8e-15, Sum P(3) = 9.8e-15
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 380 SPITNSPPGNWVQF---SSPIEHNPLQTISKSPNFRNMSPTTSNH 421
SP + P N + S I +N TI N++N + + SN+
Sbjct: 53 SPSSTPPQNNNDKINNVSGGINNNNGNTIKNQTNYQNNNNSNSNN 97
Score = 39 (18.8 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 668 NNNGNQLDSKKQFQLELEKIRSGEDTRTTLMIKN 701
NNN N ++++Q Q + +K + + +++N
Sbjct: 1453 NNNNNNNNNQQQQQQQQQKHQYNQTAYEVSILEN 1486
Score = 38 (18.4 bits), Expect = 3.2e-34, Sum P(3) = 3.2e-34
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 668 NNNGNQLDSKKQFQLE 683
NNN N L++K Q + +
Sbjct: 1393 NNNYNNLNNKNQHRFK 1408
Score = 37 (18.1 bits), Expect = 4.8e-15, Sum P(3) = 4.8e-15
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 667 ENNNGNQLDSKKQFQLELE-KIRS 689
E+NN N +++ + +L+ E KI S
Sbjct: 723 ESNNNNNINTNEIIKLKNELKISS 746
>GENEDB_PFALCIPARUM|PFF1125c [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0045836 "positive
regulation of meiosis" evidence=ISS] InterPro:IPR012677
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836
InterPro:IPR007201 Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 306 (112.8 bits), Expect = 3.4e-25, P = 3.4e-25
Identities = 57/115 (49%), Positives = 79/115 (68%)
Query: 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPF 754
TT+M++NIPNKYT ML+ ++E+ KG YDF YLPIDF+NKCNVGYAFIN + P + F
Sbjct: 290 TTVMLRNIPNKYTQNMLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELF 349
Query: 755 YEAFNGKKWEKFNSEKVASLAYARIQGRAALVAHFQNSSLMNED-KRCRPILFHS 808
+ FN K F S KV S+ + R+QG A + H++NS++M + +PILF +
Sbjct: 350 IKFFNNYKLNAFKSNKVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILFQN 404
>UNIPROTKB|C6KT70 [details] [associations]
symbol:PFF1125c "RNA-binding protein mei2 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003723
"RNA binding" evidence=ISS] [GO:0045836 "positive regulation of
meiosis" evidence=ISS] InterPro:IPR012677 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045836 InterPro:IPR007201
Pfam:PF04059 EMBL:AL844505 RefSeq:XP_966216.1
ProteinModelPortal:C6KT70 EnsemblProtists:PFF1125c:mRNA
GeneID:3885870 KEGG:pfa:PFF1125c EuPathDB:PlasmoDB:PF3D7_0623400
HOGENOM:HOG000281591 ProtClustDB:CLSZ2497402 Uniprot:C6KT70
Length = 427
Score = 306 (112.8 bits), Expect = 3.4e-25, P = 3.4e-25
Identities = 57/115 (49%), Positives = 79/115 (68%)
Query: 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPF 754
TT+M++NIPNKYT ML+ ++E+ KG YDF YLPIDF+NKCNVGYAFIN + P + F
Sbjct: 290 TTVMLRNIPNKYTQNMLMDVMNEHFKGLYDFFYLPIDFRNKCNVGYAFINFIHPYYAELF 349
Query: 755 YEAFNGKKWEKFNSEKVASLAYARIQGRAALVAHFQNSSLMNED-KRCRPILFHS 808
+ FN K F S KV S+ + R+QG A + H++NS++M + +PILF +
Sbjct: 350 IKFFNNYKLNAFKSNKVCSVTWGRVQGLKANIEHYRNSAIMTIPIPQYKPILFQN 404
>DICTYBASE|DDB_G0276005 [details] [associations]
symbol:DDB_G0276005 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 dictyBase:DDB_G0276005
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
RefSeq:XP_643375.1 ProteinModelPortal:Q552K7
EnsemblProtists:DDB0217746 GeneID:8620259 KEGG:ddi:DDB_G0276005
eggNOG:NOG269978 InParanoid:Q552K7 OMA:NNMNHPN
ProtClustDB:CLSZ2846869 Uniprot:Q552K7
Length = 1984
Score = 193 (73.0 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 59/179 (32%), Positives = 94/179 (52%)
Query: 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG--FVMISYYDIRAAR 243
P+G SR L ++ N+N++ L F+++G+I+++Y G V+ISY+DIR +
Sbjct: 1411 PHGGKASRNLLIKT-NANIDLRNLICKFKEHGEIKSVYQNITRSGTMHVVISYFDIRNSV 1469
Query: 244 TAMRA--------------LQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV 289
A+ A N + +L I++ + KD P D GTLV+FN D
Sbjct: 1470 FALSANCNSSSCSNNSSTNKNNNDIINDRLSIYYCLNKD-PID----HGTLVLFNFDAVF 1524
Query: 290 S-NEDLRQIFGA---YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
S N + + A +G+++EIRE K KFIEFYD+R A AA+ +L + GK++
Sbjct: 1525 STNSNTHMLTSALNQFGQIREIREDL-KNKLKFIEFYDIRDAIAAVNALKKQVFFGKKL 1582
Score = 189 (71.6 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 45/120 (37%), Positives = 68/120 (56%)
Query: 682 LELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYA 741
+ L+ IRSG + +TT+MIKNIP K+T + L + + H YD+LY+P D K + GY
Sbjct: 1778 INLDDIRSGVNQKTTVMIKNIPYKFTH-LNLDTMFKKHNLAYDYLYMPTDPITKAHYGYT 1836
Query: 742 FINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQG---RAALVAHFQNSSLMNED 798
F+N ++ II +N KK N K + YAR+QG +A VA+ N++ N +
Sbjct: 1837 FVNFVNYQDIIQLCSLYNNKKLG--NHPKFCEITYARLQGFPQTSATVANNNNNNNNNNN 1894
Score = 88 (36.0 bits), Expect = 6.8e-13, Sum P(3) = 6.8e-13
Identities = 34/107 (31%), Positives = 52/107 (48%)
Query: 189 EHPSRTLF----VRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAART 244
+H + LF V + NSN L + Q+G IR + K++ I +YDIR A
Sbjct: 1511 DHGTLVLFNFDAVFSTNSNTH--MLTSALNQFGQIREIREDLKNK-LKFIEFYDIRDAIA 1567
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSN 291
A+ AL+ + +KL + S+ D+ S K N T VFN+ S+
Sbjct: 1568 AVNALKKQVFFGKKLLVRLSV-LDH-SKKSQNNTT--VFNVSDQFSD 1610
Score = 65 (27.9 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 38/124 (30%), Positives = 51/124 (41%)
Query: 549 SFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSR 608
SF S +HH PS E + ES + SF N N+GSF N GS
Sbjct: 598 SF-NSYNNHHRYKEPSH---EAQVFNDSESIKNSFNNSNHSNNGSFSNNNGSFSNNNGSF 653
Query: 609 ASVNPGITVPRNLSDNGSSFRVMSSPRLSPVFLGNGPYPGLTPANIEGLYERGRSRRIEN 668
S N G N ++NGS F +S R + NG + + +N Y + N
Sbjct: 654 NSFNNGQNNSINNNNNGS-FNSYNSNRNN-----NGSFN--SHSNSFNNYNNNNNN--SN 703
Query: 669 NNGN 672
NNG+
Sbjct: 704 NNGS 707
Score = 43 (20.2 bits), Expect = 3.8e-08, Sum P(4) = 3.8e-08
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 597 NDGSFMVNMGSRASVNPGITVPRNLSDN 624
N+G+ N G+ S N G + N +DN
Sbjct: 1037 NNGNGNGNSGNNNSNNDGYNINNNDNDN 1064
Score = 42 (19.8 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 383 TNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSN 420
+NS GN S+ +N L SPNF + + +T+N
Sbjct: 479 SNSNIGNSGGNSNNGSNNQLLIQKVSPNFNSNNVSTNN 516
Score = 42 (19.8 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 23/116 (19%), Positives = 41/116 (35%)
Query: 566 VPLERRFG-FLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRASVNPGITVPRNLSDN 624
VPL + L + ++ P+ D N S + NP + N
Sbjct: 272 VPLPDTYSPLLHSNTHHNYRPPIPI-SKNYSNTDSKPKSNPNSNPNSNPNSNPSSFTNSN 330
Query: 625 GSSFRVMSSPRL--SPVFLGNGPYPGLTPANIEGLYERGRSRRIENNNGNQLDSKK 678
+S+ +L SP +G P +T + ++ NNN N +++ K
Sbjct: 331 PNSYNGFEEDQLKDSPKSSASGS-PTVTIGFSPS--KNSKNTNSNNNNNNNINTNK 383
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 376 HQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSN 420
H PI S N+ S + NP + +PN S T SN
Sbjct: 288 HNYRPPIPISK--NYSNTDSKPKSNPNSNPNSNPNSNPSSFTNSN 330
Score = 38 (18.4 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 648 GLTPANIEGLYERGRSRRIENNNGNQLDSKKQFQ 681
G+ P N+ LY +S ++ + D ++Q Q
Sbjct: 1716 GIPPLNVSQLYNNSKSSPTQSPRYSH-DQQQQQQ 1748
Score = 37 (18.1 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 544 SGRQGSFLGSSQHH--HVGSAPSGV 566
SG GSF G+ H ++ SGV
Sbjct: 1763 SGSSGSFEGTDDSHIINLDDIRSGV 1787
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 658 YERGRSRRIENNNGNQLDS 676
+ G++ I NNN +S
Sbjct: 656 FNNGQNNSINNNNNGSFNS 674
>DICTYBASE|DDB_G0268266 [details] [associations]
symbol:DDB_G0268266 "RNA recognition motif-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0030587
"sorocarp development" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0268266 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AAFI02000003 GO:GO:0003676 GO:GO:0030587
eggNOG:NOG321849 RefSeq:XP_647083.1 ProteinModelPortal:Q55GV1
EnsemblProtists:DDB0202068 GeneID:8615887 KEGG:ddi:DDB_G0268266
InParanoid:Q55GV1 OMA:FSIPKEE Uniprot:Q55GV1
Length = 689
Score = 272 (100.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 64/178 (35%), Positives = 99/178 (55%)
Query: 174 VPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVM 233
+ + G V GE E RTLFVRN+ ++++ ++ A+F + G+I+ ++ + RG
Sbjct: 170 IKDNNGKVIGEK---EKLGRTLFVRNVAYSIKEVDIPAIFAKIGEIKKTFSLLESRGIAF 226
Query: 234 ISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNED 293
ISYYD+R A A +Q L R +DIHFSIPK+ +D N G + V N D + NE
Sbjct: 227 ISYYDLRDAERAKNEIQGTTLDGRSIDIHFSIPKEESGLED-NAGFIHVKNRDVPL-NE- 283
Query: 294 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351
+R F +YG++K++ E R +EFYD+RA E AL N + + + L+ P
Sbjct: 284 VRIFFSSYGDIKDVTE--FNRDQVLVEFYDLRACEKALAEANGVKLGDQTLDLDYYTP 339
Score = 44 (20.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 28/159 (17%), Positives = 55/159 (34%)
Query: 597 NDGSFMVNMGSRASVNPGITVPRNLSDNGSSFRVMSSPRLSPVFLGNGPYPGLTPANIEG 656
N+ +N S + N G + N++ N +S ++ NG + +N
Sbjct: 493 NNSHNNMNQNSYYNDNSGGGIYNNMNSNFNSNNNNNNNNSGSNSNTNGGWNN-NNSNSNN 551
Query: 657 LYERGRSRRIENNNGNQLDSKKQFQLE--LEKIRSGEDTRTTLMIKNIPNKYTSKMLLAA 714
+ + + NN N +++ + + + + M N N +
Sbjct: 552 MNNMNMNNNMNNNMNNNMNNNMNNNMNNNMNNMNKNMNNNNNNMNNNNNNNNMNNSNNMG 611
Query: 715 IDENHKGTYDFLYLPI-----DFKNKCNVGYAFINMLSP 748
++ Y+F Y I +F N N +FIN P
Sbjct: 612 YGNSNNSNYNFNYNNISNPSNNFNNN-NYNNSFINYSEP 649
Score = 42 (19.8 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 650 TPANIEGLYERGRSRRIENNNGNQLDSKKQ 679
TP I + + R+ NNN N ++ +
Sbjct: 338 TPKEIPAIIDAYEGRKQNNNNSNNSNNNNR 367
Score = 38 (18.4 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 653 NIEGLYERGRSRRIENNNGN 672
N G+ R R +NNN N
Sbjct: 366 NRGGMNNRNNYNRRDNNNNN 385
Score = 37 (18.1 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 640 FLGNGPYPGLTPANIEGLYERGRSRRIENNNGNQLDSKK 678
F +GP + + Y R N+N N +S+K
Sbjct: 415 FNKSGPIRNVYQTDRNPDYRRRDDNNYNNSNSNNNNSRK 453
>DICTYBASE|DDB_G0286611 [details] [associations]
symbol:DDB_G0286611 "sulphate anion transporter
family protein" species:44689 "Dictyostelium discoideum"
[GO:0055085 "transmembrane transport" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0015116 "sulfate transmembrane transporter
activity" evidence=IEA] [GO:0008272 "sulfate transport"
evidence=IEA] [GO:0008271 "secondary active sulfate transmembrane
transporter activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001902
InterPro:IPR011547 InterPro:IPR012677 InterPro:IPR018045
Pfam:PF00916 PROSITE:PS01130 SMART:SM00360 dictyBase:DDB_G0286611
GO:GO:0016021 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000089 GO:GO:0008272 InterPro:IPR007201 Pfam:PF04059
GO:GO:0008271 Gene3D:3.30.750.24 InterPro:IPR002645 SUPFAM:SSF52091
PROSITE:PS50801 Pfam:PF01740 eggNOG:COG0659 TIGRFAMs:TIGR00815
RefSeq:XP_001733021.1 ProteinModelPortal:B0G157
EnsemblProtists:DDB0237857 GeneID:8625706 KEGG:ddi:DDB_G0286611
OMA:ILFRIEN ProtClustDB:CLSZ2846953 Uniprot:B0G157
Length = 1221
Score = 247 (92.0 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 48/102 (47%), Positives = 67/102 (65%)
Query: 685 EKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFIN 744
E I SG DTRT+LMI+NIPN+ T + L A IDE K TYDFL +P+D K + GYAFIN
Sbjct: 1087 ENIISGVDTRTSLMIRNIPNRLTQQNLTALIDEEFKDTYDFLNMPLDPHTKVSRGYAFIN 1146
Query: 745 MLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGRAALV 786
+++ F++ F +W+ +N +K+ + YA IQG AL+
Sbjct: 1147 FKDHMNVYRFHQKFFHTRWKNYNHDKICEINYAIIQGEEALL 1188
Score = 44 (20.5 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 254 LRRRKLDIHFSIPKDNPSDKDLNQGTL 280
L RR+ ++ I + K+ N GTL
Sbjct: 1030 LERRRKELESEIQQQKAQQKNQNNGTL 1056
Score = 40 (19.1 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 641 LGNGPYPGLTPANIEGLYERGRSRRIENNNGNQLDS 676
L +GP TP + + ++NN+ + DS
Sbjct: 94 LKSGPLIEETPLTFSSFLTKLNKKNLQNNSNIESDS 129
>TAIR|locus:2029647 [details] [associations]
symbol:MCT1 "AT1G37140" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR012677 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
InterPro:IPR007201 Pfam:PF04059 EMBL:DQ056481 IPI:IPI00521142
RefSeq:NP_174902.1 UniGene:At.51989 ProteinModelPortal:Q4PT05
SMR:Q4PT05 EnsemblPlants:AT1G37140.1 GeneID:840631
KEGG:ath:AT1G37140 TAIR:At1g37140 HOGENOM:HOG000124801
InParanoid:Q4PT05 OMA:ICEITVA PhylomeDB:Q4PT05
ProtClustDB:CLSN2682263 ArrayExpress:Q4PT05 Genevestigator:Q4PT05
Uniprot:Q4PT05
Length = 233
Score = 200 (75.5 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 42/105 (40%), Positives = 58/105 (55%)
Query: 694 RTTLMIKNIPNKYTSKMLLAAIDE-----NHKGTYDFLYLPIDFKNKCNVGYAFINMLSP 748
RT++M+KNIPN LL +D N K +YDFLYLP+DF + N+GYAF+N S
Sbjct: 83 RTSVMVKNIPNCLGRMDLLRILDNHCRKHNEKSSYDFLYLPMDFGKRANLGYAFVNFTSS 142
Query: 749 LHIIPFYEAFNGKKWEKFN-SEKVASLAYARIQGRAALVAHFQNS 792
L F F W+ +K+ + A+ QG+ L HF+NS
Sbjct: 143 LAAERFRREFENFSWDNIGFRKKICEITVAKYQGKEELTRHFRNS 187
>ASPGD|ASPL0000003579 [details] [associations]
symbol:AN6494 species:162425 "Emericella nidulans"
[GO:0045836 "positive regulation of meiosis" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034064 "Tor2-Mei2-Ste11
complex" evidence=IEA] [GO:0033620 "Mei2 nuclear dot" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004860 "protein kinase
inhibitor activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001301 InterPro:IPR007201 Pfam:PF04059
EnsemblFungi:CADANIAT00007260 HOGENOM:HOG000200448 OMA:VDETSHG
Uniprot:C8V0B7
Length = 669
Score = 186 (70.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 50/142 (35%), Positives = 72/142 (50%)
Query: 679 QFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDF---KNK 735
Q +++E+IR G D RTT+M++NIPNK ML A +DE G YDF+YL I +
Sbjct: 438 QNAVDVERIRLGLDVRTTIMLRNIPNKIDQTMLKAIVDETSHGKYDFMYLRIVLAMLSST 497
Query: 736 CNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGRAALVAHFQNSSLM 795
+ Y ++ H + +G S+K QG+ LV F+NSS+M
Sbjct: 498 SKIVYTYVIQSLSKH----EQGAHGTASTAIRSQK------CHTQGKDCLVQKFRNSSVM 547
Query: 796 NEDKRCRPILFHS-EGPEAGDQ 816
E RP +FH+ GP AG +
Sbjct: 548 LEHPSFRPKIFHTGTGPLAGKE 569
Score = 47 (21.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 27/128 (21%), Positives = 59/128 (46%)
Query: 229 RGFVMISYYDIRAARTAM---RALQNK----PLRRRKLDIHFS---IPKDNPSDKDLNQG 278
+G V +S+ D R A+ A+ R L+ + PL R+ H +P+ + + L
Sbjct: 208 KGNVYVSFTDCREAKKAIEKVRLLRPEWRVFPLTPREYVQHLDPALLPQTSNYEGQL-LA 266
Query: 279 TLVVFNLDPSVSNE----DLRQIFGAYGEVKEIRETPHKRHH--KF-IEFYDVRAAEAAL 331
T+ + +P ++ L + +G+++ + + +F IE+++ R AE +
Sbjct: 267 TVYYDSRNPGLNQHTVARSLETLAMTFGDIQAFTPLLSSQENISEFHIEYFNTRDAENVM 326
Query: 332 KSLNRSDI 339
+LN + +
Sbjct: 327 TTLNGTSV 334
Score = 45 (20.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 431 PQVS-TLEKIAPIGKDQGRGSLMEHALTNTISANGASFQQSNS 472
PQ+S T PIG + H +T +S + S ++S
Sbjct: 80 PQLSPTAASFTPIGLTDSASANRAHFMTKDVSPSNISLLTADS 122
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 181 (68.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 51/177 (28%), Positives = 86/177 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LYTACKHRGFVMISYYDIRAARTAMR 247
E +RTLFV+N+ ++ +LR +F+Q DIR + RG I + A A+
Sbjct: 376 ERDARTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALE 435
Query: 248 ALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGT--LVVFNLDPSVSNEDLRQIFGAYGEVK 305
Q ++ R + + F+ K + + LVV NL S S + L+ +F ++
Sbjct: 436 EAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAVSIR 495
Query: 306 EIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS-----RPGGARRN 357
+ + + F+EF +V ++ AL++ N +DI G+ I+LE S R GG R N
Sbjct: 496 IPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGGGRGN 552
Score = 131 (51.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 46/170 (27%), Positives = 81/170 (47%)
Query: 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQ-- 250
+LF+ N+N+N + EL++ ++ L + G Y D + +AL+
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALELN 350
Query: 251 NKPLRRRKLDIHFSIPKDNPSD--KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK-EI 307
K L + + + + K+N + K+ + TL V NL S++ +DLR+IF +++ +
Sbjct: 351 GKKLLGQPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQAVDIRVPM 410
Query: 308 RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE----PSRPGG 353
T R +IEF AE AL+ SD+ G+ I ++ SR GG
Sbjct: 411 GNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGG 460
Score = 125 (49.1 bits), Expect = 0.00039, P = 0.00039
Identities = 35/168 (20%), Positives = 81/168 (48%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
S+ L V N+ + + L+++FE+ IR + +G+ + + ++ ++ A+ N
Sbjct: 467 SKVLVVNNLAFSASEDSLQSVFEKAVSIRIPQNNGRPKGYAFVEFENVEDSKEALENCNN 526
Query: 252 KPLRRRKLDIHFSI-PKDNPSDKDLNQG---TLVVFNLDPSVSNEDLRQIF-GAYG-EVK 305
+ R + + +S ++ N G TL V L +++ L+ F GA +
Sbjct: 527 TDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSFDGAIAARIA 586
Query: 306 EIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
R+T + F++F + + +AA ++++ +I G ++ L+ ++P G
Sbjct: 587 TDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYAKPKG 634
Score = 46 (21.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 633 SPRLSPVFLGNGPYPGLTPANIEGLYERGRSRRIENNNGNQLDSKKQFQLELEKIRSGED 692
+P S V + N + +++ ++E+ S RI NNG K +E E + ED
Sbjct: 463 APSASKVLVVNNLAFSASEDSLQSVFEKAVSIRIPQNNGRP---KGYAFVEFENV---ED 516
Query: 693 TRTTL 697
++ L
Sbjct: 517 SKEAL 521
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 164 (62.8 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
+RTL +N++ N+ + EL+ +FE +IR + + +G I + A + Q
Sbjct: 250 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQG 309
Query: 252 KPLRRRKLDIHFSIPKDNPSDKDLNQGT-------LVVFNLDPSVSNEDLRQIFGAYGEV 304
+ R + ++++ K ++ T LV+ NL S + E L+++F +
Sbjct: 310 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 369
Query: 305 KEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354
K + + PH + + FIEF A+ AL S N+ +I G+ I+LE P G+
Sbjct: 370 K-VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 420
Score = 135 (52.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 40/188 (21%), Positives = 85/188 (45%)
Query: 170 LHYSVPNGAGTV-AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-K 227
L+Y+ G G++ S+TL + N++ + + L+ +FE+ I+ K
Sbjct: 319 LYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK 378
Query: 228 HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDP 287
+G+ I + A+ A+ + + R + + P+ +P+ + TL V L
Sbjct: 379 SKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSE 438
Query: 288 SVSNEDLRQIF-GAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ E L++ F G+ + RET + F++F A+ A +++ +I G ++
Sbjct: 439 DTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVT 498
Query: 346 LEPSRPGG 353
L+ ++P G
Sbjct: 499 LDWAKPKG 506
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 163 (62.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 46/156 (29%), Positives = 79/156 (50%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
S L+V ++ +S+L LF +YGDI + T RGF I Y + A A ALQ
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRI-TVYSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 252 KPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP 311
L ++ I ++ P P +L V + P+VS +DL + F +G++++ R
Sbjct: 76 ANLNGSQIKIEYARPA-KPCK------SLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFL- 127
Query: 312 HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347
+R FI++Y++ A A KS+N + G ++++
Sbjct: 128 RERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVD 162
Score = 53 (23.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 24/96 (25%), Positives = 43/96 (44%)
Query: 377 QVGSPITNSPPG-NWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVST 435
Q+ P + PP N ++S + H +Q S+S N +SP + MP ++ Q S+
Sbjct: 719 QLPPPPSRYPPASNNPNYTSGMVHGNMQYQSQSVNMPQLSPLPN--MPHNNYSMYTQGSS 776
Query: 436 LEKIAPIGKDQGRGSLMEHALTNTISANGASFQQSN 471
P+ + + E ++ N S+QQ+N
Sbjct: 777 NH---PVSQPMVQQYQPEASMPNQNYGPIPSYQQAN 809
Score = 52 (23.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 32/123 (26%), Positives = 48/123 (39%)
Query: 576 PESPETSFMNPVAFCGMGIGQNDGSFMVN---MGSRASVNPGITVPRNLSDNGSSFR--V 630
PE +TSF + + + ND SF+ + G S+ P + S NG+ + V
Sbjct: 285 PEQDDTSFYSGMKRSRTDMFNNDPSFVSSPHSTGIPGSMRP-LRGTNERSYNGAEYNDVV 343
Query: 631 MSSPRLS-PVFLGNGPYPGLTPANIEGLYERGRSRRIENNNGNQLDSKKQFQLELEKIRS 689
P P G G P T I +G +RR +N + + QL E R+
Sbjct: 344 GKEPNWRRPSANGTGILPSPTGPGILPSPAQG-TRRPMRSNPDSWEGYDPAQLVRESKRT 402
Query: 690 GED 692
D
Sbjct: 403 RRD 405
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 139 (54.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 45/150 (30%), Positives = 71/150 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
+ F+ A A++ L+ ++ G+ I
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGRII 141
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 164 (62.8 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
+RTL +N++ N+ + EL+ +FE +IR + + +G I + A + Q
Sbjct: 396 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQG 455
Query: 252 KPLRRRKLDIHFSIPKDNPSDKDLNQGT-------LVVFNLDPSVSNEDLRQIFGAYGEV 304
+ R + ++++ K ++ T LV+ NL S + E L+++F +
Sbjct: 456 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 515
Query: 305 KEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354
K + + PH + + FIEF A+ AL S N+ +I G+ I+LE P G+
Sbjct: 516 K-VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 566
Score = 139 (54.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/188 (21%), Positives = 86/188 (45%)
Query: 170 LHYSVPNGAGTV-AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-K 227
L+Y+ G G++ S+TL + N++ + + L+ +FE+ I+ K
Sbjct: 465 LYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK 524
Query: 228 HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDP 287
+G+ I + A+ A+ + + R + + P+ +P+ + TL V L
Sbjct: 525 SKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSE 584
Query: 288 SVSNEDLRQIF-GAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ E L++ F G+ + RET + F++F A+AA +++ +I G ++
Sbjct: 585 DTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 644
Query: 346 LEPSRPGG 353
L+ ++P G
Sbjct: 645 LDWAKPKG 652
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 164 (62.8 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 45/172 (26%), Positives = 83/172 (48%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
+RTL +N++ N+ + EL+ +FE +IR + + +G I + A + Q
Sbjct: 397 ARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQG 456
Query: 252 KPLRRRKLDIHFSIPKDNPSDKDLNQGT-------LVVFNLDPSVSNEDLRQIFGAYGEV 304
+ R + ++++ K ++ T LV+ NL S + E L+++F +
Sbjct: 457 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 516
Query: 305 KEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354
K + + PH + + FIEF A+ AL S N+ +I G+ I+LE P G+
Sbjct: 517 K-VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 567
Score = 139 (54.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/188 (21%), Positives = 86/188 (45%)
Query: 170 LHYSVPNGAGTV-AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-K 227
L+Y+ G G++ S+TL + N++ + + L+ +FE+ I+ K
Sbjct: 466 LYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGK 525
Query: 228 HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDP 287
+G+ I + A+ A+ + + R + + P+ +P+ + TL V L
Sbjct: 526 SKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSE 585
Query: 288 SVSNEDLRQIF-GAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ E L++ F G+ + RET + F++F A+AA +++ +I G ++
Sbjct: 586 DTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 645
Query: 346 LEPSRPGG 353
L+ ++P G
Sbjct: 646 LDWAKPKG 653
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 161 (61.7 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 43/166 (25%), Positives = 81/166 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E +TL+V N++S+V + L ALF G +++ + G + I Y + +AA TA
Sbjct: 3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSC-KIIREPGNDPYAFIEYSNYQAATTA 61
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGT-LVVFNLDPSVSNEDLRQIFGAYGEV 304
+ A+ + +++ ++++ N D++ + V +L P + E LR+ F +GE+
Sbjct: 62 LTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEI 121
Query: 305 KEIR--ETPHKRHHK---FIEFYDVRAAEAALKSLNRSDIAGKRIK 345
R PH K F+ F AE A++++N I + I+
Sbjct: 122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIR 167
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 162 (62.1 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 49/176 (27%), Positives = 84/176 (47%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLYTACKHRGFVMISYYDIRAARTAMR 247
E +RTLFV+N+ V + E++ +FE ++R L +G I + A A+
Sbjct: 365 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 424
Query: 248 ALQNKPLRRRKLDIHFSIPKDNP-SDK---DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 303
Q + R + I ++ K S K + TL+V NL + S E L+++F
Sbjct: 425 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATS 484
Query: 304 VKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNL 358
+K + + + + F+EF A+ AL S N ++I G+ I+LE S P + N+
Sbjct: 485 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNM 540
Score = 142 (55.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 44/175 (25%), Positives = 83/175 (47%)
Query: 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAM 246
GE S+TL V N++ + L+ LF++ I+ + +G+ + + A+ A+
Sbjct: 454 GERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 513
Query: 247 RALQNKPLRRRKLDIHFSIP---KDNPSDKD-LNQG--TLVVFNLDPSVSNEDLRQIF-G 299
+ N + R + + FS P K N + + NQ TL V L + E LR+ F G
Sbjct: 514 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEG 573
Query: 300 AYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+ + R+T + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 574 SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKG 628
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 162 (62.1 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 49/176 (27%), Positives = 84/176 (47%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLYTACKHRGFVMISYYDIRAARTAMR 247
E +RTLFV+N+ V + E++ +FE ++R L +G I + A A+
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 248 ALQNKPLRRRKLDIHFSIPKDNP-SDK---DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 303
Q + R + I ++ K S K + TL+V NL + S E L+++F
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATS 486
Query: 304 VKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNL 358
+K + + + + F+EF A+ AL S N ++I G+ I+LE S P + N+
Sbjct: 487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNM 542
Score = 142 (55.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 44/175 (25%), Positives = 83/175 (47%)
Query: 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAM 246
GE S+TL V N++ + L+ LF++ I+ + +G+ + + A+ A+
Sbjct: 456 GERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 515
Query: 247 RALQNKPLRRRKLDIHFSIP---KDNPSDKD-LNQG--TLVVFNLDPSVSNEDLRQIF-G 299
+ N + R + + FS P K N + + NQ TL V L + E LR+ F G
Sbjct: 516 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEG 575
Query: 300 AYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+ + R+T + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 576 SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKG 630
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 162 (62.1 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 49/176 (27%), Positives = 84/176 (47%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLYTACKHRGFVMISYYDIRAARTAMR 247
E +RTLFV+N+ V + E++ +FE ++R L +G I + A A+
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426
Query: 248 ALQNKPLRRRKLDIHFSIPKDNP-SDK---DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 303
Q + R + I ++ K S K + TL+V NL + S E L+++F
Sbjct: 427 EKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATS 486
Query: 304 VKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNL 358
+K + + + + F+EF A+ AL S N ++I G+ I+LE S P + N+
Sbjct: 487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNM 542
Score = 142 (55.0 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 44/175 (25%), Positives = 83/175 (47%)
Query: 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAM 246
GE S+TL V N++ + L+ LF++ I+ + +G+ + + A+ A+
Sbjct: 456 GERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEAL 515
Query: 247 RALQNKPLRRRKLDIHFSIP---KDNPSDKD-LNQG--TLVVFNLDPSVSNEDLRQIF-G 299
+ N + R + + FS P K N + + NQ TL V L + E LR+ F G
Sbjct: 516 NSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEG 575
Query: 300 AYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+ + R+T + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 576 SISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKG 630
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 136 (52.9 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 44/147 (29%), Positives = 69/147 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAG 341
+ F+ A A++ L+ ++ G
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQG 138
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 136 (52.9 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 44/147 (29%), Positives = 69/147 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAG 341
+ F+ A A++ L+ ++ G
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQG 138
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 150 (57.9 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 153 (58.9 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 41/180 (22%), Positives = 86/180 (47%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E RTL+V N++ +V ++ + +F Q G ++ G + + +Y+ R A A
Sbjct: 5 EDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAAA 64
Query: 246 MRALQNKPLRRRKLDIHF-SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV 304
+ A+ + + + + +++ S P D N + V +L P +S +D+R F +G++
Sbjct: 65 LAAMNGRKILGKDMKVNWASTPSSQKKDTS-NHFHVFVGDLSPEISTDDVRAAFAPFGKI 123
Query: 305 KEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE--PSRPGGARRN 357
+ R T + + FI F + AE+A++ +N + G++I+ +P + N
Sbjct: 124 SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSN 183
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 140 (54.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/151 (25%), Positives = 71/151 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQ 250
+FV+N++ ++++ L F +G+I + A K + + + Y D +A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 310
L + + + I K + D L V N SV+ LRQ+F YGE+ +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVK 225
Query: 311 PHKRHHKF--IEFYDVRAAEAALKSLNRSDI 339
++ KF I + D +A+ A+ +LN I
Sbjct: 226 MDNKNRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 132 (51.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 39/172 (22%), Positives = 82/172 (47%)
Query: 190 HPS---RTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC------KHRGFVMISYYDIR 240
HPS +L+V ++N +V ++ L +F G + ++ C K G+ ++Y+++
Sbjct: 10 HPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSI-RVCRDSVTRKSLGYAYVNYHNLA 68
Query: 241 AARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA 300
A A+ L ++ + + +S +D PS + G + V NLD S+ N+ L F
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 301 YGEVKEIR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348
+G + + E + + F+ + D +A+ A++ +N + K + + P
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 76 (31.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 32/107 (29%), Positives = 43/107 (40%)
Query: 659 ERGRSRRIENNNGNQLDSKKQFQLELEKI--RSGEDTR-TTLMIKNIPNKYTSKMLLAAI 715
E IE NG QL SK + K R+ DT+ T L +KN P+ T L
Sbjct: 154 EESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLF 213
Query: 716 DENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKK 762
N G + + +D KN+ + FIN + NGKK
Sbjct: 214 --NPYGEITSMIVKMDNKNR---KFCFINYADAESAKNAMDNLNGKK 255
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 140 (54.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/151 (25%), Positives = 71/151 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQ 250
+FV+N++ ++++ L F +G+I + A K + + + Y D +A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 310
L + + + I K + D L V N SV+ LRQ+F YGE+ +
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVK 225
Query: 311 PHKRHHKF--IEFYDVRAAEAALKSLNRSDI 339
++ KF I + D +A+ A+ +LN I
Sbjct: 226 MDNKNRKFCFINYADAESAKNAMDNLNGKKI 256
Score = 132 (51.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 39/172 (22%), Positives = 82/172 (47%)
Query: 190 HPS---RTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC------KHRGFVMISYYDIR 240
HPS +L+V ++N +V ++ L +F G + ++ C K G+ ++Y+++
Sbjct: 10 HPSFSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSI-RVCRDSVTRKSLGYAYVNYHNLA 68
Query: 241 AARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA 300
A A+ L ++ + + +S +D PS + G + V NLD S+ N+ L F
Sbjct: 69 DAERALDTLNYTNIKGQPARLMWS-HRD-PSLRKSGTGNIFVKNLDKSIDNKALFDTFSM 126
Query: 301 YGEVKEIR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348
+G + + E + + F+ + D +A+ A++ +N + K + + P
Sbjct: 127 FGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 76 (31.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 32/107 (29%), Positives = 43/107 (40%)
Query: 659 ERGRSRRIENNNGNQLDSKKQFQLELEKI--RSGEDTR-TTLMIKNIPNKYTSKMLLAAI 715
E IE NG QL SK + K R+ DT+ T L +KN P+ T L
Sbjct: 154 EESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLF 213
Query: 716 DENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKK 762
N G + + +D KN+ + FIN + NGKK
Sbjct: 214 --NPYGEITSMIVKMDNKNR---KFCFINYADAESAKNAMDNLNGKK 255
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 156 (60.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 45/171 (26%), Positives = 81/171 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
+RTL +N++ N+ + EL+ +FE +IR + K +G I + A + Q
Sbjct: 393 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 452
Query: 252 KPLRRRKLDIHFSIPKDNPSDKDLNQGT-------LVVFNLDPSVSNEDLRQIFGAYGEV 304
+ R + ++++ K ++ T LV+ NL S + E L+++F +
Sbjct: 453 AEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI 512
Query: 305 KEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354
K + K + + FIEF A+ AL S N+ +I G+ I+LE P G+
Sbjct: 513 KVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS 563
Score = 139 (54.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/188 (21%), Positives = 86/188 (45%)
Query: 170 LHYSVPNGAGTV-AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-K 227
L+Y+ G G++ S+TL + N++ + + L+ +FE+ I+ K
Sbjct: 462 LYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGK 521
Query: 228 HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDP 287
+G+ I + A+ A+ + + R + + P+ +P+ + TL V L
Sbjct: 522 SKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSE 581
Query: 288 SVSNEDLRQIF-GAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ E L++ F G+ + RET + F++F A+AA +++ +I G ++
Sbjct: 582 DTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 641
Query: 346 LEPSRPGG 353
L+ ++P G
Sbjct: 642 LDWAKPKG 649
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 151 (58.2 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 151 (58.2 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 151 (58.2 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSD 338
+ F+ A A++ L+ ++
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTE 135
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 130 (50.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 43/144 (29%), Positives = 68/144 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSD 338
+ F+ A A++ L+ ++
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTE 135
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 155 (59.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 50/181 (27%), Positives = 82/181 (45%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ E +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 383 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADA 442
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSD----KDLN-QG---TLVVFNLDPSVSNEDL 294
Q + R + ++++ K D K+ G TLV+ NL S + E L
Sbjct: 443 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 502
Query: 295 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+++F +K + K + + FIEF A+ AL S N+ +I G+ I+LE P G
Sbjct: 503 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 562
Query: 354 A 354
+
Sbjct: 563 S 563
Score = 141 (54.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 36/165 (21%), Positives = 78/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--R 308
+ + R + + P+ +P+ + TL V L + E L++ F + + R
Sbjct: 545 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 604
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 605 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 649
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 155 (59.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 50/181 (27%), Positives = 82/181 (45%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ E +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 384 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADA 443
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSD----KDLN-QG---TLVVFNLDPSVSNEDL 294
Q + R + ++++ K D K+ G TLV+ NL S + E L
Sbjct: 444 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 503
Query: 295 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+++F +K + K + + FIEF A+ AL S N+ +I G+ I+LE P G
Sbjct: 504 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 563
Query: 354 A 354
+
Sbjct: 564 S 564
Score = 141 (54.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 36/165 (21%), Positives = 78/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--R 308
+ + R + + P+ +P+ + TL V L + E L++ F + + R
Sbjct: 546 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 605
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 606 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 650
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 155 (59.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 50/181 (27%), Positives = 82/181 (45%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ E +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 385 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADA 444
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSD----KDLN-QG---TLVVFNLDPSVSNEDL 294
Q + R + ++++ K D K+ G TLV+ NL S + E L
Sbjct: 445 EKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 504
Query: 295 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+++F +K + K + + FIEF A+ AL S N+ +I G+ I+LE P G
Sbjct: 505 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 564
Query: 354 A 354
+
Sbjct: 565 S 565
Score = 141 (54.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 36/165 (21%), Positives = 78/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 546
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--R 308
+ + R + + P+ +P+ + TL V L + E L++ F + + R
Sbjct: 547 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 606
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 607 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 651
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 155 (59.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ + +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 393 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADA 452
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSD----KDLN-QG---TLVVFNLDPSVSNEDL 294
+ Q + R + ++++ K D K+ G TLV+ NL S + E L
Sbjct: 453 EKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETL 512
Query: 295 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+++F +K + K + + FIEF A+ AL S N+ +I G+ I+LE P G
Sbjct: 513 QEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 572
Query: 354 A 354
+
Sbjct: 573 S 573
Score = 143 (55.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 37/165 (22%), Positives = 79/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 554
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF-GAY-GEVKEIR 308
+ + R + + P+ +P+ + TL V L + E L++ F G+ + R
Sbjct: 555 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 614
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 615 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 659
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 148 (57.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 39/173 (22%), Positives = 82/173 (47%)
Query: 184 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAA 242
+H GE S+TL + N++ + + L+ +FE+ I+ K +G+ I + A
Sbjct: 104 QHVLGE--SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDA 161
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
+ A+ + + + R + + P+ +P+ + TL V L + E L++ F
Sbjct: 162 KEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV 221
Query: 303 EVKEI--RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+ + RET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 222 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 274
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 150 (57.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 150 (57.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 150 (57.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 150 (57.9 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 49/158 (31%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F YG V E +
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ F+ A A++ L+ ++ GKR ++L SR
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 149
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 149 (57.5 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ + +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 37 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADA 96
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSD----KDLN-QG---TLVVFNLDPSVSNEDL 294
+ Q + R + ++++ K D K+ G TLV+ NL S + E L
Sbjct: 97 EKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETL 156
Query: 295 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+++F +K + K + + FIEF A+ AL S N+ +I G+ I+LE P G
Sbjct: 157 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 216
Query: 354 A 354
+
Sbjct: 217 S 217
Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 37/165 (22%), Positives = 78/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N+ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 139 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 198
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF-GAY-GEVKEIR 308
+ + R + + P+ +P+ + TL V L + E L++ F G+ + R
Sbjct: 199 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDR 258
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 259 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 303
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 145 (56.1 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 47/165 (28%), Positives = 79/165 (47%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 252
R +FV N S+L LF++YG + + G+ + + D R A A+R L N
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLDNF 58
Query: 253 PL--RRRKLDIHFSI-----PK-DNPSDKDLNQG-TLVVFNLDPSVSNE-DLRQIFGAYG 302
P +R+L + ++ P+ D + +L TL V N DP + E D+ + F YG
Sbjct: 59 PFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYG 118
Query: 303 EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347
+V +R +R+ F++F A AL++ RS I + + +E
Sbjct: 119 KVTNVRI---RRNFSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 148 (57.2 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/161 (21%), Positives = 79/161 (49%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 249
RTL+V N++ +V + + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR- 308
+ + +++ ++++ + N + V +L P ++ ED++ F +G++ + R
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 309 ----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
T + + F+ FY+ AE A+ + + G++I+
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 146 (56.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 47/155 (30%), Positives = 75/155 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHHKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N +LR F YG V E +
Sbjct: 61 HGVCINVEASKNKSKASTK------LHVGNISPTCTNLELRAKFEEYGPVIECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349
+ F+ A A++ L+ ++ GKR++++ S
Sbjct: 112 DYAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLS 146
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 148 (57.2 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 34/161 (21%), Positives = 79/161 (49%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 249
RTL+V N++ +V + + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR- 308
+ + +++ ++++ + N + V +L P ++ ED++ F +G++ + R
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARV 128
Query: 309 ----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
T + + F+ FY+ AE A+ + + G++I+
Sbjct: 129 VKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
>ASPGD|ASPL0000061066 [details] [associations]
symbol:AN0421 species:162425 "Emericella nidulans"
[GO:0030686 "90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0034462
"small-subunit processome assembly" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
EMBL:AACD01000007 GO:GO:0003723 GO:GO:0030529 GO:GO:0006364
eggNOG:NOG323716 KO:K14787 RefSeq:XP_658025.1
ProteinModelPortal:Q5BGA9 STRING:Q5BGA9
EnsemblFungi:CADANIAT00002277 GeneID:2876194 KEGG:ani:AN0421.2
HOGENOM:HOG000211156 OMA:SHKGADA OrthoDB:EOG4J40R3 Uniprot:Q5BGA9
Length = 819
Score = 110 (43.8 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 267 KDNPSDKDLNQGT-LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK-----RHHKFIE 320
K++ + K + T +++ NL + +D+R +FGAYG+++ +R P K R F +
Sbjct: 685 KEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVR-VPKKFDRSARGFGFAD 743
Query: 321 FYDVRAAEAALKSLNRSDIAGKRIKLE 347
F R AE A+ +L + + G+R+ LE
Sbjct: 744 FVSAREAENAMDALKNTHLLGRRLVLE 770
Score = 96 (38.9 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 27/75 (36%), Positives = 37/75 (49%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHR-----GFVMISYYDIRAARTAM 246
S LFVRN++ ++SEL +F +G I ++ A R GF + Y D AA A
Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353
Query: 247 RALQNKPLRRRKLDI 261
R L K + R L I
Sbjct: 354 RNLDGKIFQGRLLHI 368
Score = 41 (19.5 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 652 ANIEGLYERGRSRRIENNNGNQLDSKK 678
AN E + +RIE G QLD K
Sbjct: 772 ANEEAIDAEEEIQRIEKKVGEQLDRVK 798
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 157 (60.3 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 44/165 (26%), Positives = 79/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
+RTL +N++ N+ + EL+ +FE +IR + K +G I + A + Q
Sbjct: 394 ARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 453
Query: 252 KPLRRRKLDIHFSIPKDNPSDKDLNQGT-------LVVFNLDPSVSNEDLRQIFGAYGEV 304
+ R + ++++ K ++ T LV+ NL S + E L ++F +
Sbjct: 454 AEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFI 513
Query: 305 KEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347
K + + PH + + FIEF A+ AL S N+ +I G+ I+LE
Sbjct: 514 K-VPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE 557
Score = 42 (19.8 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 669 NNGNQLDSK-KQFQLELEKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLY 727
N+ N+++ + + +LEL+ S TL +K + T + L E+ +G+
Sbjct: 542 NSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETL----KESFEGSVR-AR 596
Query: 728 LPIDFKNKCNVGYAFINMLS 747
+ D + + G+ F++ S
Sbjct: 597 IVTDRETGSSKGFGFVDFNS 616
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 126 (49.4 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 45/164 (27%), Positives = 79/164 (48%)
Query: 194 TLFVRNINSNVEDSELRALFE---QYGDIRTLYTACKHR--GFVMISYYDIRAARTAMRA 248
+L+V +++ NV DS+L F Q +R A + G+ ++Y + A AM+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 249 LQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR 308
L L + + I +S +D+ + + G L V NLD SV N+ L + F G + +
Sbjct: 107 LNYSYLNGKMIRITYS-SRDSSARRS-GVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCK 164
Query: 309 -ETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348
T H R + F++F +A+ A++ LN + K+I + P
Sbjct: 165 VATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
Score = 73 (30.8 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 29/111 (26%), Positives = 45/111 (40%)
Query: 659 ERGRSRRIENNNGNQLDSKKQFQ---LELEKIRSGEDTR--TTLMIKNIPNKYTSKMLLA 713
E IE NG L+ K+ F L E+ S D T + +KN+ T L
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKT 243
Query: 714 AIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWE 764
+ + + D K++C + F+N +P EA NGKK++
Sbjct: 244 TFGQYGSISSAVVMRDGDGKSRC---FGFVNFENPEDAARAVEALNGKKFD 291
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 150 (57.9 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 49/181 (27%), Positives = 82/181 (45%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ + +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 388 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADA 447
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSD----KDLN-QG---TLVVFNLDPSVSNEDL 294
Q + R + ++++ K D K+ G TLV+ NL S + E L
Sbjct: 448 EKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWSGESKTLVLSNLSYSATEETL 507
Query: 295 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+++F +K + K + + FIEF A+ AL S N+ +I G+ I+LE P G
Sbjct: 508 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 567
Query: 354 A 354
+
Sbjct: 568 S 568
Score = 141 (54.7 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 36/165 (21%), Positives = 78/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 490 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 549
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--R 308
+ + R + + P+ +P+ + TL V L + E L++ F + + R
Sbjct: 550 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 609
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 610 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 654
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 149 (57.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ + +RTL +N+ V EL+ +FE +IR + K +G I + A
Sbjct: 396 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKGIAYIEFKTEADA 455
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSD----KDLN-QG---TLVVFNLDPSVSNEDL 294
+ Q + R + ++++ K D K+ G TLV+ NL S + E L
Sbjct: 456 EKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETL 515
Query: 295 RQIFGAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
+++F +K + K + + FIEF A+ AL S N+ +I G+ I+LE P G
Sbjct: 516 QEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 575
Query: 354 A 354
+
Sbjct: 576 S 576
Score = 138 (53.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/165 (22%), Positives = 78/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N+ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 498 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 557
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF-GAY-GEVKEIR 308
+ + R + + P+ +P+ + TL V L + E L++ F G+ + R
Sbjct: 558 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDR 617
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 618 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 662
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 146 (56.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/182 (29%), Positives = 88/182 (48%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NGL H P T+ P +H + LF+ I N+++ +L+ LFE++G I L T
Sbjct: 34 NGLSHS--PGNPSTI----PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVL 86
Query: 227 K------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKDNPSDKDLNQGT 279
K H+G ++Y + +A A AL + K L I P D+ S D
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK-PADSESRGDRK--- 142
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKE--IRETP--HKRHHKFIEFYDVRAAEAALKSLN 335
L V L+ S +D+R++F A+G ++E I P + + F+++ A+AA+ +L+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 336 RS 337
S
Sbjct: 203 GS 204
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 146 (56.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/182 (29%), Positives = 88/182 (48%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NGL H P T+ P +H + LF+ I N+++ +L+ LFE++G I L T
Sbjct: 34 NGLSHS--PGNPSTI----PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVL 86
Query: 227 K------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKDNPSDKDLNQGT 279
K H+G ++Y + +A A AL + K L I P D+ S D
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK-PADSESRGDRK--- 142
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKE--IRETP--HKRHHKFIEFYDVRAAEAALKSLN 335
L V L+ S +D+R++F A+G ++E I P + + F+++ A+AA+ +L+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 336 RS 337
S
Sbjct: 203 GS 204
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 146 (56.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 53/182 (29%), Positives = 88/182 (48%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NGL H P T+ P +H + LF+ I N+++ +L+ LFE++G I L T
Sbjct: 34 NGLSHS--PGNPSTI----PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVL 86
Query: 227 K------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKDNPSDKDLNQGT 279
K H+G ++Y + +A A AL + K L I P D+ S D
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK-PADSESRGDRK--- 142
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKE--IRETP--HKRHHKFIEFYDVRAAEAALKSLN 335
L V L+ S +D+R++F A+G ++E I P + + F+++ A+AA+ +L+
Sbjct: 143 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALH 202
Query: 336 RS 337
S
Sbjct: 203 GS 204
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 143 (55.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/159 (24%), Positives = 79/159 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KH--RGFVMISYYDIRAARTAMRALQN 251
+F++N+ ++++ L F +G+I + AC +H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + HF ++ ++ + L + V NL V + L+ +F +G+ V
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 305 KEIRETP-HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
K +R+ H R F+ F A+ A+ +N +++G+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 136 (52.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 42/180 (23%), Positives = 87/180 (48%)
Query: 178 AGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFV 232
AG A + + +L+V ++++ V DS+L F Q G + ++ T + G+
Sbjct: 30 AGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYG 89
Query: 233 MISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNE 292
++Y + A A+ L L R + + +S+ +D PS + G + + NLD S+ ++
Sbjct: 90 YVNYATPQDASRALNELNFMALNGRAIRVMYSV-RD-PSLRKSGVGNIFIKNLDKSIDHK 147
Query: 293 DLRQIFGAYGEVK--EIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348
L + F A+G + ++ P + + F+++ AA+ A+ LN + K++ + P
Sbjct: 148 ALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
Score = 60 (26.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 32/139 (23%), Positives = 57/139 (41%)
Query: 666 IENNNGNQLDSKK----QFQLELEKIRSGEDTR-TTLMIKNIPNKYTSKMLLAAIDENHK 720
I+ NG L+ K+ F +L++ SGE + T + +KN+ + + L E
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV 249
Query: 721 GTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARIQ 780
T + + K+K G+ F+N + +A NGK ++ + E A + +
Sbjct: 250 TTSCVIMRDGEGKSK---GFGFVNFENSDDAARAVDALNGKTFD--DKEWFVGKAQKKSE 304
Query: 781 GRAALVAHFQNSSLMNEDK 799
L F+ S DK
Sbjct: 305 RETELKQKFEQSLKEAADK 323
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 133 (51.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 269 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAE 328
N D D N T+ V LD +V++++L+ IFG +GE+ ++ P KR F+++ + +AE
Sbjct: 251 NAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG-FVQYANKASAE 309
Query: 329 AALKSLNRSDIAGKRIKLEPSR 350
AL LN + + G+ I+L R
Sbjct: 310 HALSVLNGTQLGGQSIRLSWGR 331
Score = 56 (24.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/93 (24%), Positives = 38/93 (40%)
Query: 176 NGAGTVAGEHPYG-EHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLY-----TACKH 228
N A AGE + E P T+FV ++ V D L F+ YG ++ T +
Sbjct: 136 NWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRS 195
Query: 229 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261
+G+ + + D AM + + R + I
Sbjct: 196 KGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 49/177 (27%), Positives = 82/177 (46%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ + +RTL +N+ V EL+ +FE +IR + K +G I+Y + +
Sbjct: 305 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 361
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLN-QG---TLVVFNLDPSVSNEDLRQIF 298
A + L+ K +D+ K+ G TLV+ NL S + E L+++F
Sbjct: 362 ADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 421
Query: 299 GAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354
+K + K + + FIEF A+ AL S N+ +I G+ I+LE P G+
Sbjct: 422 EKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 478
Score = 143 (55.4 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 37/165 (22%), Positives = 79/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 400 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 459
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF-GAY-GEVKEIR 308
+ + R + + P+ +P+ + TL V L + E L++ F G+ + R
Sbjct: 460 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 519
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 520 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 564
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 49/177 (27%), Positives = 82/177 (46%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ + +RTL +N+ V EL+ +FE +IR + K +G I+Y + +
Sbjct: 310 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 366
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLN-QG---TLVVFNLDPSVSNEDLRQIF 298
A + L+ K +D+ K+ G TLV+ NL S + E L+++F
Sbjct: 367 ADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 426
Query: 299 GAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354
+K + K + + FIEF A+ AL S N+ +I G+ I+LE P G+
Sbjct: 427 EKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 483
Score = 143 (55.4 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 37/165 (22%), Positives = 79/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 405 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF-GAY-GEVKEIR 308
+ + R + + P+ +P+ + TL V L + E L++ F G+ + R
Sbjct: 465 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 524
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 525 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 569
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 49/177 (27%), Positives = 82/177 (46%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
G+ + +RTL +N+ V EL+ +FE +IR + K +G I+Y + +
Sbjct: 310 GKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIRLVSKDGKSKG---IAYIEFKTE 366
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLN-QG---TLVVFNLDPSVSNEDLRQIF 298
A + L+ K +D+ K+ G TLV+ NL S + E L+++F
Sbjct: 367 ADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 426
Query: 299 GAYGEVKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354
+K + K + + FIEF A+ AL S N+ +I G+ I+LE P G+
Sbjct: 427 EKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 483
Score = 143 (55.4 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 37/165 (22%), Positives = 79/165 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQ 250
S+TL + N++ + + L+ +FE+ I+ K +G+ I + A+ A+ +
Sbjct: 405 SKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 464
Query: 251 NKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF-GAY-GEVKEIR 308
+ + R + + P+ +P+ + TL V L + E L++ F G+ + R
Sbjct: 465 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDR 524
Query: 309 ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
ET + F++F A+AA +++ +I G ++ L+ ++P G
Sbjct: 525 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 569
>DICTYBASE|DDB_G0279639 [details] [associations]
symbol:DDB_G0279639 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102 PROSITE:PS50800
SMART:SM00360 SMART:SM00513 dictyBase:DDB_G0279639 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 Gene3D:1.10.720.30
EMBL:AAFI02000032 eggNOG:NOG135032 RefSeq:XP_641568.1
ProteinModelPortal:Q54WI5 EnsemblProtists:DDB0220678 GeneID:8622143
KEGG:ddi:DDB_G0279639 InParanoid:Q54WI5 OMA:ENTNTNE Uniprot:Q54WI5
Length = 1009
Score = 154 (59.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 46/171 (26%), Positives = 87/171 (50%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHR-----GFVMISYYDIRAARTAMRAL 249
LFV N+ ++V +L+ +FE++G I + R G+ I Y A TA +L
Sbjct: 402 LFVGNLGNDVGKEQLKKMFEKHGTIDRIILIKNRRTGENKGYAFIDYRTKLQASTAKSSL 461
Query: 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIR 308
+ RR L + ++ ++ + + ++ T+ V L S ++ LR++F +G++K+
Sbjct: 462 GSIVFNRRTLRVDWA--ENCNTMESMHSKTIFVDRLPRSFADVPILRKVFSPFGKIKDCN 519
Query: 309 ETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE---PSRPG 352
P+ R FI++ +V AE A + +N D+ G +I++ PS+PG
Sbjct: 520 VVPNYYGQPRGFAFIDYNNVEDAEKAQRMMNEKDLKGYKIRVNFANPSKPG 570
Score = 44 (20.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 443 GKDQGRGSLMEHALTNTISANGASFQQSNSFSEPKIGLYRG 483
G+ S + +TIS N AS N+FS ++G
Sbjct: 888 GQMNNANSNKQTGAQSTISPNTASATNQNNFSHQSAANWQG 928
Score = 43 (20.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/87 (27%), Positives = 35/87 (40%)
Query: 531 PFSSNGKIH-----GLPYSGR---QGSFLG----SSQHHHVGSAPSGVPLERRFGFLPES 578
P +G+ H P+ GR +GS +G +SQH +GS G R G P
Sbjct: 577 PSQQSGRSHESVPSSSPFRGRGRGRGS-MGVPPPNSQHFGIGSVGGGFRGGRGVGGYPGD 635
Query: 579 PETSFMNPVAFCGMGIGQNDGSFMVNM 605
+ G G+G +GS + M
Sbjct: 636 HSGIYQGGRG--GRGVGGVNGSGPIAM 660
Score = 43 (20.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 401 PLQTISKSPNFRNMSPTTSNHMPGL---ASILHPQVSTLEKIAPI--GKDQGRGSLMEHA 455
P+Q+ P +MS SN+ P + A++ Q+++ + + K +G+ SL+ A
Sbjct: 724 PMQSQQGYPQVNSMSVPQSNNNPLINQQANLQAQQLASAQVQIQLMEQKLKGQESLIRAA 783
Query: 456 LTNTISANGASFQQSNSFSEPKIGLYR 482
+ A + QQ + + L R
Sbjct: 784 QQKVVQAQQQAQQQVQREKQQREALLR 810
Score = 41 (19.5 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 642 GNGPYPGLTPANIEGLYERGRSRR-IENNNGN 672
G G YPG + G+Y+ GR R + NG+
Sbjct: 628 GVGGYPG----DHSGIYQGGRGGRGVGGVNGS 655
Score = 38 (18.4 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 16/66 (24%), Positives = 23/66 (34%)
Query: 526 SSMGHPFSSNGKIHGLPYSGRQGSFLGSSQHHHVG---SAPSGVPLERRFGFLPESPETS 582
S M H FS H + QG+F H+ + G P +P+S
Sbjct: 688 SQMQHQFSQMQHQHYNEHQRNQGAFYPPPPPPHMNLPMQSQQGYPQVNSMS-VPQSNNNP 746
Query: 583 FMNPVA 588
+N A
Sbjct: 747 LINQQA 752
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 51/178 (28%), Positives = 83/178 (46%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 252
R ++V N + + S+L LF ++G ++ + G+ + + D R A A+R N
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58
Query: 253 PLR--RRKLDIH----FSIPKDNPSD-KDL-NQG---TLVVFNLDPSVSNE-DLRQIFGA 300
RRKL + F + P D K + NQ TL V N DP + E D+ + F
Sbjct: 59 TFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEP 118
Query: 301 YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS-RPGGARRN 357
YG+V +R +R+ F++F A AL S + S + K + +E + R G R +
Sbjct: 119 YGKVLNVRM---RRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEYALREAGERED 173
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 141 (54.7 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/165 (20%), Positives = 81/165 (49%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +Y+ R A +A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAASA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 305
+ A+ + + +++ ++++ + N + V +L P ++ ED++ F +G +
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 306 EIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ R T + + F+ F++ AE A++ + + G++I+
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 167
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 155 (59.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 47/182 (25%), Positives = 90/182 (49%)
Query: 173 SVPNGAGTVAGEHPYGEHP-SRTLFVRNINSNVEDSELRALFEQYG---DIRTLYTACKH 228
S P A +VA P G P S +L+V ++ +V ++ L LF G IR A
Sbjct: 61 STPTNASSVAT--PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTR 118
Query: 229 R--GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLD 286
R G+ ++++++ A+ L ++ R I +S + +PS + + G + + NLD
Sbjct: 119 RSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS--QRDPSLRKMGTGNVFIKNLD 176
Query: 287 PSVSNEDLRQIFGAYGEVKEIR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
P++ N+ L F A+G++ + E + + + F+ F V +A AA++ +N + K
Sbjct: 177 PAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDK 236
Query: 343 RI 344
++
Sbjct: 237 KV 238
Score = 37 (18.1 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 609 ASVNPGITVPRNLSDNGSSFRVMSSPRLSPVFLGNGPYPGLTPANIEG 656
A+VN G +P NG + P + F GP PG N G
Sbjct: 493 AAVN-GRGMPMVPGHNGP---MPMYPGMPTQFPAGGPAPGYPGMNARG 536
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 141 (54.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 325
P+ + D N T+ V LDP+V+ E LRQ+F YGE+ ++ KR F++F
Sbjct: 270 PQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCG-FVQFGTRA 328
Query: 326 AAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356
+AE AL SLN + + G+ I+L R +++
Sbjct: 329 SAEQALSSLNGTQLGGQSIRLSWGRSPSSKQ 359
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 41/158 (25%), Positives = 76/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHR--G----FVMISYYDIRAARTAMRA 248
L + + ++ +SEL LF ++G+IR +HR G + + Y R A A+
Sbjct: 43 LILNYLPQDMTESELHRLFSKFGEIRKA-KIIRHRRTGISCCYGFVDYVSERQAAAAVNG 101
Query: 249 LQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR 308
+ R ++L + F+ PS+ + +L V NL + + +R++F YG + ++
Sbjct: 102 MDGYETRGKRLKVAFA----RPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVN 157
Query: 309 ETPHKRHHK-----FIEFYDVRAAEAALKSLNRSDIAG 341
HK +++ F++F VR AE A ++R I G
Sbjct: 158 LLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEG 195
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 139 (54.0 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 51/197 (25%), Positives = 86/197 (43%)
Query: 174 VPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIR---TLYT--ACKH 228
V GA + E P ++ LFV N+ +V L LFEQ G + +Y +
Sbjct: 132 VSEGAVSERAEFPEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQS 190
Query: 229 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKD--LNQGTLVVF--N 284
RGF ++ + A TA+ L R L ++ + P+ + ++ + + V+ N
Sbjct: 191 RGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGN 250
Query: 285 LDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339
L V N L Q+F +G+V E R ET R F+ DV A+ +L+ ++
Sbjct: 251 LPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNL 310
Query: 340 AGKRIKLEPSRPGGARR 356
G+ I++ + RR
Sbjct: 311 EGRAIRVNVAEERPPRR 327
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 140 (54.3 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 41/161 (25%), Positives = 77/161 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L F +G I + +G+ + Y D RAA A+ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNG 159
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
K LR L + F KD ++ K + + N + +E LR +F YG+ V
Sbjct: 160 KLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSV 219
Query: 305 KEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
K +++ K + F+ F +AA+ A++ +N DI G+ I
Sbjct: 220 KVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 143 (55.4 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 40/170 (23%), Positives = 81/170 (47%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHR------GFVMISYYDIRAA 242
E+ S +L+V ++ +V ++ L +F G + ++ C+ G+ +++ D A
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSI-RVCRDAITKTSLGYAYVNFNDHEAG 92
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
R A+ L P++ R I +S + +PS + G + + NL P + N+ L F +G
Sbjct: 93 RKAIEQLNYTPIKGRLCRIMWS--QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG 150
Query: 303 EVKEIR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348
++ + E + F+ F + AA+ A+ +LN + G+ I + P
Sbjct: 151 DILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 144 (55.7 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 38/162 (23%), Positives = 81/162 (50%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH----RGFVMISYYDIRAARTAMRALQ 250
+F++N++S +++ L F +G+I + A +G+ + Y AA A++ +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 251 NKPLRRRKLDI-HFSIPKDNPS---DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE 306
L +K+ + H KD S + N + + N+DP V +E+ R++F +GE+
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITS 251
Query: 307 I---RETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
R++ K R F+ F +A+AA++ +N ++ +++
Sbjct: 252 ATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKL 293
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 143 (55.4 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 39/159 (24%), Positives = 79/159 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KH--RGFVMISYYDIRAARTAMRALQN 251
+F++N+ ++++ L F +G+I + AC +H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + HF ++ ++ + L + V NL V + L+ +F +G+ V
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 305 KEIRETP-HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
K +R+ H R F+ F A+ A+ +N +++G+
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGR 259
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 118 (46.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 24/115 (20%), Positives = 58/115 (50%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 249
RTL+V N++ +V + + LF Q G ++ +H + + +Y+ R A A+ A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV 304
+ + +++ ++++ + N + V +L P ++ ED++ F +G++
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Score = 97 (39.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPHKRH--HKFIEFYDVRAAEAALKSLN 335
TL V NL V+ + Q+F G K + T H + + F+EFY+ R A AAL ++N
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 69
Query: 336 RSDIAGKRIKLE-PSRPGGARRN 357
I GK +K+ + P +++
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKD 92
Score = 43 (20.2 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 418 TSNHMPGLASILHPQVSTLE---KIAPIGK 444
TSNH L P+++T + AP GK
Sbjct: 93 TSNHFHVFVGDLSPEITTEDIKSAFAPFGK 122
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 142 (55.0 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 38/174 (21%), Positives = 84/174 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACK-H--RGFVMISYYDIRAARTAMRALQN 251
+F++N+ ++++ L F +G+I + C H RGF + + AA+ A+R +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI 307
L RK+ + HF ++ ++ + L + V NL V L+ +F +G++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSV 220
Query: 308 R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRN 357
+ ++ H R F+ F A+ A+ +N +++G+ + + ++ R+N
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQN 274
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 127 (49.8 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 46/167 (27%), Positives = 77/167 (46%)
Query: 184 EHP-YGEHPSRTLFVRNINSNVEDSELRALFEQYG---DIRTLYTACKH----RGFVMIS 235
+HP + S +FV I + +LR LFE YG +I L ++ +G ++
Sbjct: 44 DHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVT 103
Query: 236 YYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDL 294
YY ++A A AL N K L I P D+ + + L V + + D+
Sbjct: 104 YYTRKSALEAQNALHNMKILPGMHHPIQMK-PADSEKNNAVEDRKLFVGMISKKCNENDI 162
Query: 295 RQIFGAYGEVKEIR--ETPH--KRHHKFIEFYDVRAAEAALKSLNRS 337
R +F YG+++E R P R F+ F + A++A+KS+++S
Sbjct: 163 RLMFSPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQS 209
Score = 61 (26.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 22/86 (25%), Positives = 39/86 (45%)
Query: 563 PSGVPLERRF-----GFLPESPETSFMNPVAFCG----MGIGQNDGSFMVNMGSRASVNP 613
PSG P + + G P S +S +NP+A G + G G M ++ S A++N
Sbjct: 330 PSGQPAQSAWDAYKAGSSPTSSTSSSVNPMASLGALQSLAAGAGAGLNMSSLASMAALNG 389
Query: 614 GITVPRNLSDNGSSFRVMSSPRLSPV 639
G+ + +GS+ ++ S +
Sbjct: 390 GLGSGGLSNGSGSTMEALTQAAYSGI 415
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 143 (55.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 47/174 (27%), Positives = 85/174 (48%)
Query: 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRT-LYTAC---------KHRGFVMISYYDIR 240
P+ LFV NI + E+ E++G + LY K+RGF + Y +
Sbjct: 243 PNLRLFVGNIPKSKGKDEI---LEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHK 299
Query: 241 AARTAMRALQNKPLRRRKLDI--HFSIPKDNPSDKDLNQ-GTLVVFNLDPSVSNEDLRQI 297
AA A R L ++ DI ++ P++ P ++ +++ L V NL VS + L++
Sbjct: 300 AASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQ 359
Query: 298 FGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351
F YG+V+ +++ + + FI F D +A A++ LN +I I++ ++P
Sbjct: 360 FEQYGKVERVKKI---KDYAFIHFEDRDSAVEAMRGLNGKEIGASNIEVSLAKP 410
Score = 47 (21.6 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 591 GMGIGQNDGSFMVNMGSRASVNPGITVPRNLSDNGSSFRVMSS-PRLSPVFLGNGPYPGL 649
G G G G V+ G+ ++ G + ++ S R +S P SP +G G G+
Sbjct: 515 GGGGGSGGGGGSVSGGTVLPLSAGGSQNSPMASGQRSARGSASGPSASPSLMGVGRGHGI 574
Query: 650 TPANIEGLYERGRSRRI 666
T + +RG R+
Sbjct: 575 TVPRGRVVGQRGSISRL 591
Score = 42 (19.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 534 SNGKIHGLPYSGRQGSFLGSSQHHHVGSA--PSGVP 567
S G + L G Q S + S Q GSA PS P
Sbjct: 528 SGGTVLPLSAGGSQNSPMASGQRSARGSASGPSASP 563
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 135 (52.6 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 33/165 (20%), Positives = 80/165 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 305
+ A+ + + +++ ++++ + N + V +L P ++ ED++ F +G +
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 306 EIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ R T + + F+ F++ AE A++ + + G++I+
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 167
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 134 (52.2 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 31/161 (19%), Positives = 78/161 (48%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 249
+TL+V N++ +V ++ + LF Q G + G + + +++ R A A+ A+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR- 308
+ + +++ ++++ + N + V +L P ++ ED++ F +G + + R
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 122
Query: 309 ----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
T + + F+ F++ AE A++ + + G++I+
Sbjct: 123 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 163
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 125 (49.1 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 38/165 (23%), Positives = 85/165 (51%)
Query: 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACK----HR--GFVMISYYDIRAARTAMR 247
+L+V +++ NV DS+L F Q G + T+ C+ R G+ +++ + + A A++
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTV-RVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 248 ALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI 307
L PL + + + +S +D PS + G + + NLD S+ ++ L F ++G +
Sbjct: 96 ELNYIPLYGKPIRVMYS-HRD-PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 308 R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348
+ + + + F+++ + +A+ A++ LN + K++ + P
Sbjct: 154 KVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 63 (27.2 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 659 ERGRSRRIENNNGNQLDSKK----QFQLELEKIRSGEDTR-TTLMIKNIPNKYTSKMLLA 713
E + IE NG L+ K+ F E+ + T+ T + +KN+ T L
Sbjct: 174 EESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
Query: 714 AIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWE 764
A E K T + + K+K G+ F+N + E+ NG K++
Sbjct: 234 AFGEYGKITSAVVMKDGEGKSK---GFGFVNFENADDAARAVESLNGHKFD 281
Score = 48 (22.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 642 GNGPYPGLTPANIEGLYERGRSRRIENNNGNQLDSKKQFQLELEKIRSGEDTRTTLM--- 698
G G G N E + R+ +E+ NG++ D K+ + +K +S +T +
Sbjct: 250 GEGKSKGFGFVNFENADDAARA--VESLNGHKFDDKEWYVGRAQK-KSERETELRVRYEQ 306
Query: 699 -IKNIPNKYTSKML 711
+K +K+ S L
Sbjct: 307 NLKEAADKFQSSNL 320
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 136 (52.9 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 50/158 (31%), Positives = 77/158 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+++ S K S K L V N+ P+ +N++LR F AYG + +R K+
Sbjct: 61 HGVNINVEASKNKSKASTK------LHVGNISPTCTNQELRAKFEAYGGL--LR-CFLKK 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKR--IKLEPSR 350
+ FI + A + L+ + GKR ++L SR
Sbjct: 112 DYIFIHLEREQPACLRVPGLDGTQAQGKRMHVQLSTSR 149
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 120 (47.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 42/154 (27%), Positives = 71/154 (46%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NGL H P T+ P +H + LF+ I N+++ +L+ LFE++G I L T
Sbjct: 34 NGLSHS--PGNPSTI----PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVL 86
Query: 227 K------HRGFVMISYYDIRAARTAMRALQNK---PLRRRKLDIHFSIPKDNPSDKDLNQ 277
K H+G ++Y + +A A AL + P R + + + + L Q
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQ 146
Query: 278 GT-----LVVFNLDPSVSNEDLRQIFGAYGEVKE 306
L V L+ S +D+R++F A+G ++E
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Score = 65 (27.9 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 318 FIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356
F+ F + +A+ A++++N I KR+K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 120 (47.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 42/154 (27%), Positives = 71/154 (46%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NGL H P T+ P +H + LF+ I N+++ +L+ LFE++G I L T
Sbjct: 34 NGLSHS--PGNPSTI----PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVL 86
Query: 227 K------HRGFVMISYYDIRAARTAMRALQNK---PLRRRKLDIHFSIPKDNPSDKDLNQ 277
K H+G ++Y + +A A AL + P R + + + + L Q
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQ 146
Query: 278 GT-----LVVFNLDPSVSNEDLRQIFGAYGEVKE 306
L V L+ S +D+R++F A+G ++E
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Score = 65 (27.9 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 318 FIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356
F+ F + +A+ A++++N I KR+K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 120 (47.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 42/154 (27%), Positives = 71/154 (46%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NGL H P T+ P +H + LF+ I N+++ +L+ LFE++G I L T
Sbjct: 34 NGLSHS--PGNPSTI----PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVL 86
Query: 227 K------HRGFVMISYYDIRAARTAMRALQNK---PLRRRKLDIHFSIPKDNPSDKDLNQ 277
K H+G ++Y + +A A AL + P R + + + + L Q
Sbjct: 87 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQ 146
Query: 278 GT-----LVVFNLDPSVSNEDLRQIFGAYGEVKE 306
L V L+ S +D+R++F A+G ++E
Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEE 180
Score = 65 (27.9 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 318 FIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356
F+ F + +A+ A++++N I KR+K++ RP A R
Sbjct: 446 FVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 143 (55.4 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 50/178 (28%), Positives = 90/178 (50%)
Query: 194 TLFVRNINSNVEDSELRALFEQYGDIRTL-YTACK---HRGFVMISYYDIRAARTAMRAL 249
TLFV N +++ +R LF +YG+I + + + K HR F + + AA +A+ AL
Sbjct: 906 TLFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFCYLQFKTSVAAHSAL-AL 964
Query: 250 QNKPLRRRKLDIHFSIPKDNPSDK-DLN----QGTLV-VFNLDPSVSNEDLRQIFGAYGE 303
+ +H + +PS K D N +G + V N++ S S +DL+++F +G
Sbjct: 965 DGSAVGN---GLHLVVKISDPSRKQDRNGPIYEGREIHVSNVNWSASEDDLKELFSRFGT 1021
Query: 304 VKEIRETPHK-----RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356
V+ +R P K + ++ F A AAL +++ + G+ + ++ S P GA+R
Sbjct: 1022 VELVR-LPRKVDGGSKGFGYVVFSSKEEATAAL-AMHEQEFRGRPLHVKVSAPQGAKR 1077
>UNIPROTKB|C9IZL7 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590762 HGNC:HGNC:7871 HOGENOM:HOG000231095
IPI:IPI00645966 ProteinModelPortal:C9IZL7 SMR:C9IZL7 STRING:C9IZL7
PRIDE:C9IZL7 Ensembl:ENST00000454976 ArrayExpress:C9IZL7
Bgee:C9IZL7 Uniprot:C9IZL7
Length = 207
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 303 EVK 305
+V+
Sbjct: 173 QVE 175
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/165 (20%), Positives = 80/165 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 305
+ A+ + + +++ ++++ + N + V +L P ++ ED++ F +G +
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 306 EIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ R T + + F+ F++ AE A++ + + G++I+
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 167
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/165 (19%), Positives = 81/165 (49%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G ++ G + + +++ R A +
Sbjct: 5 EQP-KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHAAAS 63
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 305
+ A+ + + +++ ++++ + N + V +L P ++ +D+R F +G +
Sbjct: 64 LAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRIS 123
Query: 306 EIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ R T + + F+ F++ AE A++ + + G++I+
Sbjct: 124 DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 168
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 139 (54.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 39/155 (25%), Positives = 78/155 (50%)
Query: 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHR-----GFVMISYYDIRAART 244
HP+ +L+ +++ V ++ L LF+ ++ ++ C+ + G+ I++ + A
Sbjct: 46 HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSV-RVCRDQNRRSLGYAYINFSNPNDAYR 104
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV 304
AM AL PL R + I S +PS + +G + + NLD S+ N+ L + F ++G +
Sbjct: 105 AMEALNYTPLFDRPIRIMLS--NRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTI 162
Query: 305 KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLN 335
+ T + + F++F +A+AA+ LN
Sbjct: 163 LSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 548 GSFLGSSQHHHVG-SAPSGVPLER-RFGFLPESPETSFMNPVAFCGMGIGQNDGSFMV 603
G G QH +VG + S VP + +GF P+ FM P GM G G+F+V
Sbjct: 439 GPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQ-----FM-P----GMRPGSGPGNFIV 486
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 116 (45.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 27/100 (27%), Positives = 53/100 (53%)
Query: 178 AGTVAGEHPY--GEHPSRTLFVRNINSNVEDSEL----RALFEQYGDIRTL--YTACKHR 229
A V G P G P+ T+++ N+N ++ EL RA+F Q+G I + + KH+
Sbjct: 6 AAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHK 65
Query: 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269
G + + D+ +A A++++Q+ P + + I ++ K +
Sbjct: 66 GQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSD 105
Score = 57 (25.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 334
L V NL + L+ +F Y KE+R K F+E+ D A AA+ L
Sbjct: 181 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHL 235
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 116 (45.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 27/100 (27%), Positives = 53/100 (53%)
Query: 178 AGTVAGEHPY--GEHPSRTLFVRNINSNVEDSEL----RALFEQYGDIRTL--YTACKHR 229
A V G P G P+ T+++ N+N ++ EL RA+F Q+G I + + KH+
Sbjct: 6 AAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHK 65
Query: 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269
G + + D+ +A A++++Q+ P + + I ++ K +
Sbjct: 66 GQAWVVFEDVASATEALKSMQDFPFHNKPMRIQYAKTKSD 105
Score = 57 (25.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 334
L V NL + L+ +F Y KE+R K F+E+ D A AA+ L
Sbjct: 181 LFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHL 235
>POMBASE|SPBC8D2.09c [details] [associations]
symbol:msl1 "U2 snRNP-associated protein Msl1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0030620 "U2 snRNA binding"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC8D2.09c GO:GO:0005829 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AB004538 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG317159 OrthoDB:EOG4TB7MM GO:GO:0030620
PANTHER:PTHR10501 PIR:T40754 RefSeq:NP_595571.1
ProteinModelPortal:Q7LL14 IntAct:Q7LL14 STRING:Q7LL14
EnsemblFungi:SPBC8D2.09c.1 GeneID:2541219 KEGG:spo:SPBC8D2.09c
OMA:LYLYCTQ NextBio:20802331 Uniprot:Q7LL14
Length = 111
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 275 LNQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEI--RETPHKRHHKFIEFYDVRAAE 328
+NQ TL V NL+ ++ DLR +F YG V +I +TP R + F+D AA
Sbjct: 1 MNQNTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAA 60
Query: 329 AALKSLNRSDIAGKRIKLE 347
A+K+L GK +K++
Sbjct: 61 IAMKALKNFIFFGKEMKIQ 79
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 135 (52.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 44/177 (24%), Positives = 81/177 (45%)
Query: 195 LFVRNINSNVEDSELRALFEQYGD-------IRTLYTACKHRGFVMISYYDIRAARTAMR 247
LF+ NI N + E R + E G I+ ++RGF + YY+ A + +
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 248 AL--QNKPLRRRKLDIHFSIPKDNP--SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 303
+ N L + ++ PK +P S L V N+ + S E L+++F +GE
Sbjct: 258 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGE 317
Query: 304 VKEIRETPHK---RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRN 357
V +I P K R F+ + + +A A+K R ++ G+ +++ ++P R++
Sbjct: 318 VTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKH 374
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 42/161 (26%), Positives = 78/161 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
+FV N+ S + ELRALFE+YG + K+ GFV + + AA+ A+ AL +
Sbjct: 4 IFVGNVASATTEDELRALFEKYGAVSDC-DILKNYGFVHMD--EEEAAQKAVSALHKHEV 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
++ + ++ K + K + V N+ V+ ++++F +G+V E +
Sbjct: 61 NGSRITVEYATTKVRNATK------IYVGNVPEGVAAAKIKELFQPFGKVVECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355
++ F+ A A+ LN S + G++I + SR +R
Sbjct: 112 NYAFVHMQRENEALDAIAKLNHSKVDGQKIFVSLSRSNPSR 152
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 124 (48.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 236 YYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLR 295
Y R RT A KPL + + + N + D T+ V +D SV+ +DL+
Sbjct: 239 YCSSRPMRTGPAA-NKKPLTMQPAS--YQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLK 295
Query: 296 QIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350
+FG +GE+ ++ P + F+++ + AE AL LN + + G+ I+L R
Sbjct: 296 SVFGQFGELVHVK-IPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGR 349
Score = 55 (24.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 176 NGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQ-YGDIR 220
N A AGE E P T+FV ++ +V D L F+ Y ++
Sbjct: 156 NWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVK 201
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 133 (51.9 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 39/160 (24%), Positives = 79/160 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L LF +G+I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 252 KPLRRRKLDI-HFSIPKDNPSD-KDLNQGTLV-VF--NLDPSVSNEDLRQIFGAYG---E 303
L R++ + F P++ ++ + ++ T VF N + +E L++IF YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTES 227
Query: 304 VKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
VK IR+ K + F+ + AA+ A+ L+ I GK
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGK 267
>ZFIN|ZDB-GENE-040426-1938 [details] [associations]
symbol:rbm4.3 "RNA binding motif protein 4.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0004672 "protein kinase activity" evidence=IEA]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1938
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 EMBL:AL928799 EMBL:BC067153 IPI:IPI00493442
RefSeq:NP_998482.1 UniGene:Dr.5277 SMR:Q6NXC1 STRING:Q6NXC1
Ensembl:ENSDART00000037817 Ensembl:ENSDART00000135207 GeneID:406277
KEGG:dre:406277 CTD:406277 InParanoid:Q6NXC1 OMA:RPYDAER
OrthoDB:EOG4J9N12 NextBio:20817910 Uniprot:Q6NXC1
Length = 341
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 49/163 (30%), Positives = 81/163 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
+F+ N+ E EL++LF QYG + T K+ FV + D R ++A +A++N L
Sbjct: 4 IFIGNLPQQAEVDELKSLFSQYGTV-TECAIIKNFAFV---HMDDR--KSATKAIKNLHL 57
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGT--LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
+ +H P + + + NQG L V N++ +E LR +F YG V E
Sbjct: 58 YK----LH-GTPINVEASRGKNQGPVKLHVANVEKGTDDE-LRALFEDYGTVAECAII-- 109
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI--KLEPSRPGG 353
++ F+ + A A+K L+ ++ GKRI ++ SRP G
Sbjct: 110 -KNFAFVHMNNSDEAMDAIKGLDNTEFQGKRIHVQISKSRPRG 151
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 135 (52.6 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 39/169 (23%), Positives = 83/169 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRAL 249
++V +I + + +R F +G I+++ KH+GF + Y AA+ A+ +
Sbjct: 95 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQM 154
Query: 250 QNKPLRRRKLDIH--FSIPKDNPSDKDLNQ-----GTLVVFNLDPSVSNEDLRQIFGAYG 302
+ L R + + +I + P L + + V ++ P +S++D++ +F A+G
Sbjct: 155 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFG 214
Query: 303 EVKE--IRETPHKRHHK---FIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
+K + P HK FIE+ ++A+ A+ S+N D+ G+ +++
Sbjct: 215 RIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRV 263
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/120 (19%), Positives = 59/120 (49%)
Query: 231 FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVS 290
+ + +Y+ R A A+ A+ + + +++ ++++ + N + V +L P ++
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 291 NEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
ED++ F +G++ + R T + + F+ FY+ AE A+ + + G++I+
Sbjct: 71 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 132 (51.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 38/160 (23%), Positives = 80/160 (50%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L LF +G+I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 252 KPLRRRKLDI-HFSIPKDNPSD-KDLNQGTLV-VF--NLDPSVSNEDLRQIFGAYG---E 303
L R++ + F P++ ++ + ++ T VF N+ + +E L+++F YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTES 227
Query: 304 VKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
VK IR+ K + F+ + AA+ A+ L+ I GK
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 132 (51.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 38/160 (23%), Positives = 79/160 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L LF +G+I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 252 KPLRRRKLDI-HFSIPKDNPSD-KDLNQGTLV-VF--NLDPSVSNEDLRQIFGAYG---E 303
L R++ + F P++ ++ + ++ T VF N + +E L+++F YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTES 227
Query: 304 VKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
VK IR+ K + F+ + AA+ A+ L+ I GK
Sbjct: 228 VKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGK 267
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 139 (54.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 37/154 (24%), Positives = 73/154 (47%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC------KHRGFVMISYYDIRAARTA 245
S +L+V +N +V ++ L +F G + ++ C K G+ ++Y+ A
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSI-RVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 305
+ L P+ R I +S + +PS + G + + NL P++ N+ L F A+G++
Sbjct: 110 IEELNYNPIEGRPCRIMWS--QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 167
Query: 306 EIR----ETPHKRHHKFIEFYDVRAAEAALKSLN 335
+ E + F+ + AAEAA++++N
Sbjct: 168 SCKVATDEFGQSKCFGFVHYETAEAAEAAIENVN 201
Score = 43 (20.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 642 GNGPYPGLTP 651
GN PYPG P
Sbjct: 463 GNAPYPGPNP 472
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 132 (51.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 46/198 (23%), Positives = 90/198 (45%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI---RTLY 223
N +H + G G G RTL+V N++S V + + LF Q G + + ++
Sbjct: 23 NARMHSKLAEREGFHLGN---GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIF 79
Query: 224 TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI-PKDNPSDKDLNQGTLV- 281
+ + + + D A A++ + + L R++ +++++ P S D + V
Sbjct: 80 DG-SNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVF 138
Query: 282 VFNLDPSVSNEDLRQIFGAYGEV---KEIRET--PHKRHHKFIEFYDVRAAEAALKSLNR 336
V +L V N+ LR+ F +G+V K IR+T + + F+ + AE A++ +N
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 198
Query: 337 SDIAGKRIKLE--PSRPG 352
+ + I+ +PG
Sbjct: 199 QWLGRRTIRTNWATRKPG 216
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 135 (52.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 46/171 (26%), Positives = 79/171 (46%)
Query: 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 250
P++ ++ NIN + E+R LF Q+G ++ + ++ I++ D+ A A L
Sbjct: 175 PTKIVWAGNINPESTEEEVRHLFSQFGYLQAI-KIIPNKQCAFITFADVNCAIQAQFNLN 233
Query: 251 NKPLRRRKLDIHF----SIPKDN-----------PSDKDLNQGTLVVFNLDPSVSNEDLR 295
R L + F + P+ N P ++ L + N++ +VS E L+
Sbjct: 234 GTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYELLK 293
Query: 296 QIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
QIF +G V IR H R F+ F+ V +A AA LN + + G +K+
Sbjct: 294 QIFDQFGNVDTIRIL-HGRGCAFVNFFTVESAAAARNGLNGTMVCGMPLKI 343
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 135 (52.6 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 48/221 (21%), Positives = 88/221 (39%)
Query: 142 ELEGEPQEXXXXXXXXXXXXXXXXGNGLLHYSVP-NGAGTVAGE----HPYGEHPSRTLF 196
+L+ P + + S P + T + P E RT+F
Sbjct: 210 DLQNSPTTSTSSTSSSNTTTNKESSSSSISTSTPPTSSSTTSSSSTLPEPDEESDQRTVF 269
Query: 197 VRNINSNVEDSELRALFEQYG---DIRTLYTACKHR----GFVMISYYDI--RAARTAMR 247
V ++ N+ + +L LF Q G ++R + R G+V S ++ +A +
Sbjct: 270 VSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAIALSGS 329
Query: 248 ALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK-- 305
L + + + + K N + + + V + SV+ E +R IF YG++
Sbjct: 330 VLDGQQILVHSIQPEKKVIKSNSTGSSGGESRIYVGYIHLSVAEEQIRVIFQPYGDIDFI 389
Query: 306 EIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
I P + FI+F +A+ A+ LN ++ GK +KL
Sbjct: 390 NIHTKPGISKYAFIQFKTQESAKRAITELNGYELMGKNLKL 430
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 109 (43.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAA 330
++G L V L + + L Q+F YG++ E+ RET R F+ F ++ A+ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 331 LKSLNRSDIAGKRIKLE-PSRP 351
+ ++N + G++I+++ P RP
Sbjct: 64 MMAMNGKSVDGRQIRVDQPLRP 85
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 103 (41.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P++T+++ N+N ++ EL+ A+F Q+G DI L T K RG + + +I +A
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTL-KMRGQAFVIFKEIGSAS 63
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R +Q P + + I +S
Sbjct: 64 NALRTMQGFPFYDKPMQIAYS 84
Score = 64 (27.6 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 264 SIPKDNPSDKDLNQGTLVVF--NLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIE 320
S NP+ + ++F NL P +NE L +F + KE+R P++ F+E
Sbjct: 126 SAENSNPNAQTEQPPNQILFLTNL-PEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 184
Query: 321 FYDVRAAEAALKSL 334
F + AA ++L
Sbjct: 185 FTTELQSNAAKEAL 198
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 134 (52.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 40/163 (24%), Positives = 76/163 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH----RGFVMISYYDIRAARTAMRALQ 250
+F++N++ +++ L F +G+I + A +G+ + Y AA A++ +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 210
Query: 251 NKPLRRRKLDIHFSIPK-DNPSDKD---LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE 306
L +K+ + IPK D S D N + V N++P V++++ R +F YG+V
Sbjct: 211 GMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTS 270
Query: 307 I-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
+ET R F+ F A A++ LN + G+ +
Sbjct: 271 SSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNL 313
Score = 127 (49.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 41/166 (24%), Positives = 77/166 (46%)
Query: 190 HP--SRTLFVRNINSNVEDSELRALFEQYGD---IRTLYTACKHR--GFVMISYYDIRAA 242
HP S +L+V ++ +V ++ L LF Q G IR A R G+ ++Y
Sbjct: 56 HPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADG 115
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A+ L ++ R I +S + +P+ + QG + + NLD ++ N+ L F A+G
Sbjct: 116 EKALEELNYTLIKGRPCRIMWS--QRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFG 173
Query: 303 EVKEIR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
+ + E + + + F+ + AA A+K +N + K++
Sbjct: 174 NILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV 219
Score = 49 (22.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 637 SPVFLGNGPYPG-LTPANIEGL-YERG 661
+PVF G G PG + PA G+ Y +G
Sbjct: 506 APVFYGPGSQPGFMPPAGGRGMPYPQG 532
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 540 GLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPE 577
G P + RQ G+ + G AP+G P R PE
Sbjct: 628 GFPPNARQQG-PGAGRGAAAGRAPAGAPAGARGAGAPE 664
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 138 (53.6 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 50/182 (27%), Positives = 87/182 (47%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NG+ H P T+ P +H + LF+ I N+++ +LR LFE++G I L T
Sbjct: 25 NGISHTHSPASCATI----PMKDHDAIKLFIGQIPRNLDEKDLRPLFEEFGKIYEL-TVL 79
Query: 227 K------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKDNPSDKDLNQGT 279
K H+G ++Y +A A AL + K L I P D+ S + +
Sbjct: 80 KDRFTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVK-PADSESRGEDRK-- 136
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKE--IRETP--HKRHHKFIEFYDVRAAEAALKSLN 335
L V L+ +D+R++F ++G ++E I P + + F+++ A+AA+ +L+
Sbjct: 137 LFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALH 196
Query: 336 RS 337
S
Sbjct: 197 GS 198
Score = 40 (19.1 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 775 AYARIQGRAALVA 787
AYA++Q +AAL+A
Sbjct: 246 AYAQVQQQAALMA 258
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 132 (51.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 39/169 (23%), Positives = 84/169 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRAL 249
++V +I + + +R F +G I+++ KH+GF + Y AA+ A+ +
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 147
Query: 250 QNKPLRRRKLDIHF--SIPKDNPSDKDLNQ-----GTLVVFNLDPSVSNEDLRQIFGAYG 302
+ L R + + SI + P + L + + V ++ P +S++D++ +F A+G
Sbjct: 148 NSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFG 207
Query: 303 EVKE--IRETPHKRHHK---FIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
++K + P HK FIE+ +++ A+ S+N D+ G+ +++
Sbjct: 208 KIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRV 256
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 108 (43.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 36/112 (32%), Positives = 54/112 (48%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 226
NGL H P GA T+ P +H + LF+ I N+++ +L+ LFE++G I L T
Sbjct: 27 NGLTHS--PGGAATI----PMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL-TVL 79
Query: 227 K------HRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKDNPS 271
K H+G ++Y + +A A AL + K L I P D+ S
Sbjct: 80 KDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK-PADSES 130
Score = 69 (29.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 318 FIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356
F+ F + +A+AA++++N I KR+K++ RP A R
Sbjct: 384 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 422
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 135 (52.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 37/159 (23%), Positives = 77/159 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACK-H--RGFVMISYYDIRAARTAMRALQN 251
+F++N+ ++++ L F +G+I + C H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + HF ++ + + + + V NL V + L+ +F +G+ V
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSV 220
Query: 305 KEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
K +R+ + H R F+ F A+ A+ +N +++G+
Sbjct: 221 KVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGR 259
Score = 45 (20.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 606 GSRASVNPGITVPRNLSDNGSS--FRVMSSPRLSPVFLGNGP--------YPGLTP 651
G AS++ G V R+ + GSS +S P S V GP YPG TP
Sbjct: 464 GLPASLSAGGHVLRSTAWEGSSQDLDCLSGPATSHVAAPPGPGQQCQAGLYPGATP 519
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 102 (41.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 190 HPSRTLFVRNINSNVEDSEL-RAL---FEQYGDIRTLYTACKH--RGFVMISYYDIRAAR 243
+P+ T++V N+N V+ EL R+L F Q+G+I L + K RG I + ++ +A
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSAS 64
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+RALQ P + + I ++
Sbjct: 65 NALRALQGFPFYGKPMRIQYA 85
Score = 64 (27.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 270 PSDKD---LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRA 326
P + D L L N+ E ++ IF + ++E+R P+ + FIE+
Sbjct: 132 PQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDL 191
Query: 327 AEAALKSLN 335
+E A ++L+
Sbjct: 192 SEPARQALD 200
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 102 (41.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 190 HPSRTLFVRNINSNVEDSEL-RAL---FEQYGDIRTLYTACKH--RGFVMISYYDIRAAR 243
+P+ T++V N+N V+ EL R+L F Q+G+I L + K RG I + ++ +A
Sbjct: 5 NPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSSAS 64
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+RALQ P + + I ++
Sbjct: 65 NALRALQGFPFYGKPMRIQYA 85
Score = 64 (27.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 270 PSDKD---LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRA 326
P + D L L N+ E ++ IF + ++E+R P+ + FIE+
Sbjct: 132 PQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDL 191
Query: 327 AEAALKSLN 335
+E A ++L+
Sbjct: 192 SEPARQALD 200
>UNIPROTKB|E9PTC9 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00781602 Ensembl:ENSRNOT00000054844 ArrayExpress:E9PTC9
Uniprot:E9PTC9
Length = 615
Score = 132 (51.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 195 LFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253
+FV N++ ++ EL ALF YG T+ + + F + + A A+ AL
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYG---TVMSCAVMKQFAFVHMRENAGAVRAIEALHGHE 59
Query: 254 LRR-RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
LR R L + S P+ P LN + V N+ + ++++LR +F G V E
Sbjct: 60 LRPGRALVVEMSRPR--P----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-- 111
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352
+ + F AE A LNRS+++GKRI +E S G
Sbjct: 112 -KVYSFAHLDKQADAEPACMCLNRSEVSGKRINVELSTKG 150
>UNIPROTKB|E9PTZ4 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306891 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003676 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
IPI:IPI00948500 Ensembl:ENSRNOT00000026621 ArrayExpress:E9PTZ4
Uniprot:E9PTZ4
Length = 667
Score = 132 (51.5 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 195 LFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253
+FV N++ ++ EL ALF YG T+ + + F + + A A+ AL
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYG---TVMSCAVMKQFAFVHMRENAGAVRAIEALHGHE 59
Query: 254 LRR-RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
LR R L + S P+ P LN + V N+ + ++++LR +F G V E
Sbjct: 60 LRPGRALVVEMSRPR--P----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-- 111
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352
+ + F AE A LNRS+++GKRI +E S G
Sbjct: 112 -KVYSFAHLDKQADAEPACMCLNRSEVSGKRINVELSTKG 150
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 130 (50.8 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 56/187 (29%), Positives = 88/187 (47%)
Query: 172 YSVPNGAGTVAG-EHPYG-----EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA 225
+S N +G V G HP G +H + LFV I N+E+S+L+ LFE++G I L T
Sbjct: 22 FSTAN-SGRVNGLSHPPGAIAMKDHDAIKLFVGQIPRNLEESDLKPLFEEFGRIYEL-TV 79
Query: 226 CK------HRGFVMISYYDIRAARTAMRAL-QNKPLRR----RKLDIHFSIPKDNPSDKD 274
K H+G ++Y +A A AL + K L R+L P + S
Sbjct: 80 LKDRFTGMHKGCAFLTYCARDSALKAQSALHEQKTLPGVSDGRELGRGLGWPPADSSALP 139
Query: 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--IRETPH--KRHHKFIEFYDVRAAEAA 330
L V L S +D+R++F +G+++E I P + F+++ A+AA
Sbjct: 140 PEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAA 199
Query: 331 LKSLNRS 337
+ SL+ S
Sbjct: 200 ISSLHGS 206
>FB|FBgn0004227 [details] [associations]
symbol:nonA "no on or off transient A" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA]
[GO:0045433 "male courtship behavior, veined wing generated song
production" evidence=NAS;IMP;TAS] [GO:0007601 "visual perception"
evidence=NAS;IMP;TAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS]
[GO:0007632 "visual behavior" evidence=NAS] [GO:0042331
"phototaxis" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0007601
GO:GO:0042331 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0045433 GO:GO:0007632
InterPro:IPR012975 Pfam:PF08075 EMBL:M33496 EMBL:X55902
EMBL:AY119651 PIR:JH0162 PIR:JH0163 RefSeq:NP_001014747.1
RefSeq:NP_523367.2 UniGene:Dm.179 ProteinModelPortal:Q04047
SMR:Q04047 MINT:MINT-810524 STRING:Q04047 PaxDb:Q04047
EnsemblMetazoa:FBtr0074232 GeneID:32603 KEGG:dme:Dmel_CG4211
CTD:32603 FlyBase:FBgn0004227 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 InParanoid:Q04047 KO:K13219
OrthoDB:EOG4GTHVF GenomeRNAi:32603 NextBio:779385 Bgee:Q04047
GermOnline:CG4211 Uniprot:Q04047
Length = 700
Score = 132 (51.5 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 45/146 (30%), Positives = 71/146 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKP 253
L+V N+ +++ D ELR +F+ YG+I +++ K+ F+ + Y+ A A RAL
Sbjct: 304 LYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHP--NAEKAKRALDGSM 361
Query: 254 LRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK 313
+ R+L + F+ P N L V NL P VSNE L + F +G ++ T
Sbjct: 362 RKGRQLRVRFA-P---------NATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDD 411
Query: 314 R-HHK---FIEFYDVRAAEAALKSLN 335
R H +EF +A A L+ N
Sbjct: 412 RGKHMGEGIVEFAKKSSASACLRMCN 437
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 128 (50.1 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 37/160 (23%), Positives = 79/160 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L LF +G I + C +G+ + + + AA A+ +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 252 KPLRRRKLDI-HFSIPKDNPSD-KDLNQGTLV-VF--NLDPSVSNEDLRQIFGAYG---E 303
L R++ + F P++ ++ + ++ T VF N + ++ L+++F YG
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTES 227
Query: 304 VKEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
VK IR++ K + F+ + AA+ A+ L+ I GK
Sbjct: 228 VKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGK 267
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 122 (48.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 37/177 (20%), Positives = 85/177 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV----------VF--NLDPSVSNED 293
+ A+ + + +++ ++++ + KD + T+V VF +L P ++ ED
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 294 LRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
++ F +G + + R T + + F+ F++ AE A++ + + G++I+
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 86 (35.3 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339
L++ N+ V+ + L QIF A+ +E+R P +R F+E+ R A A +
Sbjct: 176 LLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSL 235
Query: 340 AGKRIKLEPSR 350
+G +IK+ +R
Sbjct: 236 SGNQIKVTFAR 246
Score = 83 (34.3 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 191 PSRTLFVRNINSNVEDSELRA----LFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
PS TL++RNI + + L+ LF YG D++ T + RG + + ++ A
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTL-RMRGQAFVVFDNLENAS 82
Query: 244 TAMRALQNKPLRRRKLDIHFSIPKDN 269
A++ LQ PL + + I +S K +
Sbjct: 83 RALKDLQGYPLYGKPMMIQYSKSKSD 108
>UNIPROTKB|E2RS43 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016575 "histone deacetylation"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003676
GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
GeneTree:ENSGT00390000020883 CTD:10432 KO:K13189 OMA:SLTSYGA
EMBL:AAEX03011624 EMBL:AAEX03011625 RefSeq:XP_852283.2
ProteinModelPortal:E2RS43 Ensembl:ENSCAFT00000019697 GeneID:610639
KEGG:cfa:610639 NextBio:20896193 Uniprot:E2RS43
Length = 669
Score = 131 (51.2 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 46/160 (28%), Positives = 75/160 (46%)
Query: 195 LFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253
+FV N++ ++ EL ALF YG T+ + + F + + A A+ AL
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYG---TVMSCAVMKQFAFVHMRENAGALRAIEALHGHE 59
Query: 254 LRR-RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
LR R L + S P+ P LN + V N+ + ++++LR +F G V E
Sbjct: 60 LRPGRALVVEMSRPR--P----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-- 111
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352
+ + F+ A+AA+ LN ++ GKRI +E S G
Sbjct: 112 -KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>UNIPROTKB|Q96PK6 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IPI] [GO:0016592 "mediator complex"
evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0016575 "histone deacetylation" evidence=IPI] [GO:0009725
"response to hormone stimulus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=NAS]
[GO:0042921 "glucocorticoid receptor signaling pathway"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006310
"DNA recombination" evidence=NAS] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0005667
"transcription factor complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0042921 GO:GO:0000166 GO:GO:0006260 GO:GO:0006281
EMBL:CH471076 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0030674
GO:GO:0003723 GO:GO:0005667 GO:GO:0006310 GO:GO:0009725
GO:GO:0030529 GO:GO:0030520 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 EMBL:AP001157 GO:GO:0016592 GO:GO:0001104 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
EMBL:AF315632 EMBL:AF315633 EMBL:AF080561 EMBL:AK021768
EMBL:AK222830 EMBL:BC000488 EMBL:BE885635 EMBL:CR749306
IPI:IPI00013174 IPI:IPI00644837 IPI:IPI01009009
RefSeq:NP_001185765.1 RefSeq:NP_001185775.1 RefSeq:NP_006319.1
UniGene:Hs.533712 PDB:2DNP PDBsum:2DNP ProteinModelPortal:Q96PK6
SMR:Q96PK6 IntAct:Q96PK6 MINT:MINT-2798129 STRING:Q96PK6
PhosphoSite:Q96PK6 DMDM:73913750 PaxDb:Q96PK6 PRIDE:Q96PK6
DNASU:10432 Ensembl:ENST00000310137 Ensembl:ENST00000393979
Ensembl:ENST00000500635 GeneID:100526737 GeneID:10432
KEGG:hsa:10432 UCSC:uc001oit.3 UCSC:uc009yri.3 CTD:100526737
GeneCards:GC11P066384 HGNC:HGNC:14219 HPA:HPA006628 MIM:612409
neXtProt:NX_Q96PK6 PharmGKB:PA34263 InParanoid:Q96PK6 OMA:SLTSYGA
PhylomeDB:Q96PK6 ChiTaRS:RBM14 ChiTaRS:RBM14-RBM4
EvolutionaryTrace:Q96PK6 GenomeRNAi:10432 NextBio:39542
ArrayExpress:Q96PK6 Bgee:Q96PK6 Genevestigator:Q96PK6
GermOnline:ENSG00000173959 Uniprot:Q96PK6
Length = 669
Score = 131 (51.2 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 46/160 (28%), Positives = 75/160 (46%)
Query: 195 LFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253
+FV N++ ++ EL ALF YG T+ + + F + + A A+ AL
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYG---TVMSCAVMKQFAFVHMRENAGALRAIEALHGHE 59
Query: 254 LRR-RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
LR R L + S P+ P LN + V N+ + ++++LR +F G V E
Sbjct: 60 LRPGRALVVEMSRPR--P----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-- 111
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352
+ + F+ A+AA+ LN ++ GKRI +E S G
Sbjct: 112 -KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 132 (51.5 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 42/168 (25%), Positives = 78/168 (46%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAART 244
E R L+V +++ V + LR +FE G ++ + K + + Y D AA
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADR 140
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKD--LNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
AM+ L + + + ++ ++++ + K+ N + V +L V++E L Q F +G
Sbjct: 141 AMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFG 200
Query: 303 EVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
V E R +T R + F+ F D AE AL S++ + + I+
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIR 248
Score = 42 (19.8 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 29/119 (24%), Positives = 45/119 (37%)
Query: 566 VPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNM-GSRASVNP-GITVPRNLSD 623
VPL + FG++ ES + AF M +N + + G + P + ++ +
Sbjct: 319 VPLFQNFGYVVESRFQADRG-FAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDKNS 377
Query: 624 NGSSFRVMSSPRLSPVFLGNGPYPGLTPANIEGLYERGRSRRIENNNG-NQLDSKKQFQ 681
S SP G +PG TP+ Y G+ + N G N S FQ
Sbjct: 378 TNPQGNFDPSQAFSPQSAGGPGFPG-TPSTYFPQYG-GQFSGPQGNFGPNSAQSPAGFQ 434
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 127 (49.8 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 38/177 (21%), Positives = 85/177 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +Y+ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV----------VF--NLDPSVSNED 293
+ A+ + + +++ ++++ + KD + T+V VF +L P ++ ED
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 294 LRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
++ F +G + + R T + + F+ F++ AE A++ + + G++I+
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 127 (49.8 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 38/177 (21%), Positives = 85/177 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +Y+ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV----------VF--NLDPSVSNED 293
+ A+ + + +++ ++++ + KD + T+V VF +L P ++ ED
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 294 LRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
++ F +G + + R T + + F+ F++ AE A++ + + G++I+
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 127 (49.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 48/159 (30%), Positives = 74/159 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRA-ARTAMRALQNKP 253
+FV N++ N E+R+LF QYG I K+ GFV + D ++ A A++ L +
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISEC-DIVKNFGFV---HMDSKSEADEAIQNLHHYM 59
Query: 254 LRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK 313
L +++ S K S K L V N+ S +N++LR F YG V E
Sbjct: 60 LNGMAMNVEMSKGKPKTSTK------LHVGNISSSCTNQELRAKFEEYGPVVECDIV--- 110
Query: 314 RHHKFIEFYDVRAAEAALKSLNRSDIAGK--RIKLEPSR 350
+ + F+ V A A+ L+ + GK +KL SR
Sbjct: 111 KDYAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSR 149
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/93 (22%), Positives = 34/93 (36%)
Query: 578 SPETSFMNPVAFCGMGIGQNDGSFMVNMGSRASVNPGITVPRNLSD-NGSSFRV----MS 632
+P F + G G+ G F MG G+ +++ GS M+
Sbjct: 222 APSHGFTRGAGYAVPGYGRGAG-FESAMGYGMPAGYGVGADNSMAPVYGSEAAYGTSGMA 280
Query: 633 SPRLSPVF-LGNGPYPGLTPANIEGLYERGRSR 664
P P + + PY P + YE+ R+R
Sbjct: 281 YPGALPAYPIRRPPYEERDPYGVVDFYEKYRAR 313
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 128 (50.1 bits), Expect = 0.00010, P = 0.00010
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 127 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 185
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 186 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 242
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 243 EIEIVLAKPPDKKR 256
>UNIPROTKB|F1MI47 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
Length = 669
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 46/160 (28%), Positives = 75/160 (46%)
Query: 195 LFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253
+FV N++ ++ EL ALF YG T+ + + F + + A A+ AL
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYG---TVMSCAVMKQFAFVHMRENAGAVRAIEALHGHE 59
Query: 254 LRR-RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
LR R L + S P+ P LN + V N+ + ++++LR +F G V E
Sbjct: 60 LRPGRALVVEMSRPR--P----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-- 111
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352
+ + F+ A+AA+ LN ++ GKRI +E S G
Sbjct: 112 -KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>UNIPROTKB|Q5EA36 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
Length = 669
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 46/160 (28%), Positives = 75/160 (46%)
Query: 195 LFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253
+FV N++ ++ EL ALF YG T+ + + F + + A A+ AL
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYG---TVMSCAVMKQFAFVHMRENAGAVRAIEALHGHE 59
Query: 254 LRR-RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
LR R L + S P+ P LN + V N+ + ++++LR +F G V E
Sbjct: 60 LRPGRALVVEMSRPR--P----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-- 111
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352
+ + F+ A+AA+ LN ++ GKRI +E S G
Sbjct: 112 -KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>MGI|MGI:1929092 [details] [associations]
symbol:Rbm14 "RNA binding motif protein 14" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
Length = 669
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 46/160 (28%), Positives = 75/160 (46%)
Query: 195 LFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253
+FV N++ ++ EL ALF YG T+ + + F + + A A+ AL
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYG---TVMSCAVMKQFAFVHMRENAGAVRAIEALHGHE 59
Query: 254 LRR-RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH 312
LR R L + S P+ P LN + V N+ + ++++LR +F G V E
Sbjct: 60 LRPGRALVVEMSRPR--P----LNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-- 111
Query: 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352
+ + F+ A+AA+ LN ++ GKRI +E S G
Sbjct: 112 -KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 150
>UNIPROTKB|Q9GRX4 [details] [associations]
symbol:nonA "Protein no-on-transient A" species:47316
"Drosophila littoralis" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0007601
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0050896 InterPro:IPR012975
Pfam:PF08075 EMBL:AJ296178 ProteinModelPortal:Q9GRX4 PRIDE:Q9GRX4
FlyBase:FBgn0043410 Uniprot:Q9GRX4
Length = 698
Score = 130 (50.8 bits), Expect = 0.00011, P = 0.00011
Identities = 46/146 (31%), Positives = 73/146 (50%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKP 253
L+V N+ +++ D ELR +F+ YG+I +++ K+ F+ + Y+ I A + A RAL
Sbjct: 283 LYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKVDYH-INAEK-AKRALDGSM 340
Query: 254 LRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK 313
+ R+L + F+ P N L V NL P VSNE L + F +G ++ T
Sbjct: 341 RKGRQLRVRFA-P---------NATILRVSNLTPFVSNELLYKSFEIFGPIERASITVDD 390
Query: 314 R--H--HKFIEFYDVRAAEAALKSLN 335
R H +EF +A A L+ N
Sbjct: 391 RGKHLGEGTVEFAKKSSASACLRLCN 416
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 131 (51.2 bits), Expect = 0.00012, P = 0.00012
Identities = 43/153 (28%), Positives = 74/153 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 249
+FV I +++ LR +FEQ+G + TL RG ++YY +AA A AL
Sbjct: 297 MFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQDAL 356
Query: 250 QNKPLRRRKLD-IHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-- 306
N + LD +H I ++ N+ L V L+ + D+RQ+F +G ++E
Sbjct: 357 HNI----KTLDGMHHPIQMKPADSENRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECT 412
Query: 307 -IRETP-HKRHHKFIEFYDVRAAEAALKSLNRS 337
+R+ + F+ F + A A+K+L++S
Sbjct: 413 VLRDQAGQSKGCAFVTFATKQNAIGAIKALHQS 445
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 104 (41.7 bits), Expect = 0.00013, P = 0.00013
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRAL 249
LFV I+ +++ L +F +GDIR + T K+RGF + Y ++ A+ A+ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 250 QNKPLRRRKLDIHFSIPK 267
N L +++ +++S K
Sbjct: 70 NNFELNGKRIHVNYSKTK 87
Score = 96 (38.9 bits), Expect = 0.00093, P = 0.00093
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 276 NQGTLVVF--NLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAE 328
N T ++F +D ++ + L IF ++G+++ I T R F+E+ +V A+
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK 63
Query: 329 AALKSLNRSDIAGKRIKLEPSR 350
AL ++N ++ GKRI + S+
Sbjct: 64 HALYNMNNFELNGKRIHVNYSK 85
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 104 (41.7 bits), Expect = 0.00013, P = 0.00013
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRAL 249
LFV I+ +++ L +F +GDIR + T K+RGF + Y ++ A+ A+ +
Sbjct: 10 LFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNM 69
Query: 250 QNKPLRRRKLDIHFSIPK 267
N L +++ +++S K
Sbjct: 70 NNFELNGKRIHVNYSKTK 87
Score = 96 (38.9 bits), Expect = 0.00093, P = 0.00093
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 276 NQGTLVVF--NLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAE 328
N T ++F +D ++ + L IF ++G+++ I T R F+E+ +V A+
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK 63
Query: 329 AALKSLNRSDIAGKRIKLEPSR 350
AL ++N ++ GKRI + S+
Sbjct: 64 HALYNMNNFELNGKRIHVNYSK 85
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 104 (41.7 bits), Expect = 0.00013, P = 0.00013
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEA 329
++Q + V +L V+ ++L+ FG YGE++E RET + FI + AA+
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 330 ALKSLNRSDIAGKRIKLEPSRPG-GARR 356
A+ N D+ G++I++ +R G RR
Sbjct: 75 AVSKANGIDLQGRKIRVNIARENTGDRR 102
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 104 (41.7 bits), Expect = 0.00013, P = 0.00013
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEA 329
++Q + V +L V+ ++L+ FG YGE++E RET + FI + AA+
Sbjct: 15 MSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 330 ALKSLNRSDIAGKRIKLEPSRPG-GARR 356
A+ N D+ G++I++ +R G RR
Sbjct: 75 AVSKANGIDLQGRKIRVNIARENTGDRR 102
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 104 (41.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAART 244
P+ T+++ N+N ++ EL+ ALF Q+G I + + RG + + ++ AA
Sbjct: 14 PNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSAATN 73
Query: 245 AMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 74 ALRQLQGFPFYNKPMRIQYA 93
Score = 59 (25.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/71 (33%), Positives = 32/71 (45%)
Query: 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323
IP DNP + L + NL P +NE L +F + KE+R P K F+EF
Sbjct: 148 IP-DNPPNY-----ILFLNNL-PEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFES 200
Query: 324 VRAAEAALKSL 334
A A +L
Sbjct: 201 EAQAGVAKDAL 211
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 129 (50.5 bits), Expect = 0.00013, P = 0.00013
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 315 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 373
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 374 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMNEMNGKEIEGE 430
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 431 EIEIVLAKPPDKKR 444
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 49/173 (28%), Positives = 81/173 (46%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRA- 248
RT++V +I++ V + +L +LF G + ++ F I + D AR+A+R
Sbjct: 137 RTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRKS 196
Query: 249 ---LQNKPLR--RRKLDIHFSIPKDNPSDKD-LNQ-G-TLVVFNLDPSVSNEDLRQIFGA 300
+ P+R K I P P KD L + G T+ N+D V+ +L F
Sbjct: 197 GTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVYCTNIDKEVTKMELENFFKT 256
Query: 301 Y-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKR-IKLEPSR 350
GEV +R H I F + + AE+A+ +LN S + G+ I++ PS+
Sbjct: 257 VCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISALNCSGVVLGELPIRVSPSK 309
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 99 (39.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P+ T+++ NIN ++ EL+ ALF Q+G DI L T K RG + + ++ ++
Sbjct: 5 PNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTM-KMRGQAFVIFKELGSST 63
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 64 NALRQLQGFPFYGKPMRIQYA 84
Score = 64 (27.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 264 SIPKDNPSDKDL--NQGTLVVF-NLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFI 319
S P +P ++ + N ++F N P +NE L +F + KE+R P + F+
Sbjct: 134 SAPGTSPQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFV 193
Query: 320 EFYDVRAAEAALKSL 334
EF + A AA +L
Sbjct: 194 EFENECQAGAARDAL 208
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 137 (53.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 39/174 (22%), Positives = 86/174 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KH--RGFVMISYYDIRAARTAMRALQN 251
+F++N+ ++++ L F +G+I + C +H RGF + + AA+ A+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + HF ++ + + + + V NL V + L+ +F +G+ V
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSV 220
Query: 305 KEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRN 357
K +R+ + H R F+ F A+ A+ ++N +++G+ + + ++ R+N
Sbjct: 221 KVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQN 274
Score = 38 (18.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 381 PITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASI 428
P + PPG V + + PL + S P H +A+I
Sbjct: 440 PSSAYPPGASVVRPAAMSRRPLTPVGSSRQVSTHVPHLVPHTQRVANI 487
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 249 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 307
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 308 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 364
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 365 EIEIVLAKPPDKKR 378
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 345
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 346 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 403 EIEIVLAKPPDKKR 416
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 33/129 (25%), Positives = 69/129 (53%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 256 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 314
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 315 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 371
Query: 343 RIKLEPSRP 351
I++ ++P
Sbjct: 372 EIEIVLAKP 380
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 68/272 (25%), Positives = 109/272 (40%)
Query: 173 SVPNGAGTVAGEHPYGEHPSRT-LFVRNINSNVEDSELRALFEQYGDI------RTLYTA 225
SV N T E P G S+T L V + N+ EL++LF G+I R T
Sbjct: 48 SVSNTC-TSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG 106
Query: 226 CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNL 285
+ G+ ++Y + + A A+ L L+ + + + ++ PS + L V L
Sbjct: 107 -QSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGL 161
Query: 286 DPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRA-AEAALKSLNRSDI 339
+++ ++L Q+F +G + R T R FI F D R AE A+K LN
Sbjct: 162 PKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRF-DRRVEAEEAIKGLN---- 216
Query: 340 AGKRIKLEPSRPGGARRNLMXXXXXXXXXXXSRILQHQVGSPITNSPPGNWVQFSSPIEH 399
G++ P PG + +L H SP PG Q +
Sbjct: 217 -GQK----P--PGATEPITVKFANNPSQKSSQALLSHLYQSP-NRRYPGPLAQQAQRFRL 268
Query: 400 NPLQTISKSPNFRNMSPTTSNHMPGLASILHP 431
+ L ++ + + SP T + + LA I P
Sbjct: 269 DNL--LNMAYGVKRFSPMTIDGVTSLAGINLP 298
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 345
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 346 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 403 EIEIVLAKPPDKKR 416
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 345
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 346 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 403 EIEIVLAKPPDKKR 416
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 345
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 346 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 403 EIEIVLAKPPDKKR 416
>UNIPROTKB|E2RE36 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
Uniprot:E2RE36
Length = 633
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 345
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 346 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 403 EIEIVLAKPPDKKR 416
>UNIPROTKB|O43390 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
Ensembl:ENST00000302271 Ensembl:ENST00000374612
Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
Uniprot:O43390
Length = 633
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 34/134 (25%), Positives = 71/134 (52%)
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKDNPSDKDLNQGTLVVF- 283
K+RGF + Y D ++A A R L + ++ + + ++ P + P D ++ V+F
Sbjct: 287 KNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEP-DPEVMAKVKVLFV 345
Query: 284 -NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
NL +V+ E L + F +G+++ +++ + + F+ F D AA A+ +N +I G+
Sbjct: 346 RNLATTVTEEILEKSFSEFGKLERVKKL---KDYAFVHFEDRGAAVKAMDEMNGKEIEGE 402
Query: 343 RIKLEPSRPGGARR 356
I++ ++P +R
Sbjct: 403 EIEIVLAKPPDKKR 416
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 35/169 (20%), Positives = 85/169 (50%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMRAL 249
++V +I+ +++ +R F +G I+++ + KH+GF + Y A+ A+ +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 250 QNKPLRRRKLDIH--FSIPK-----DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
+ R + + ++P+ D ++ + + V ++ P +S ED++ +F A+G
Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFG 251
Query: 303 EVK--EIRETPHKRHHK---FIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
+ ++ + HK FIE+ + +A + A+ S+N D+ G+ +++
Sbjct: 252 PILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRV 300
>UNIPROTKB|Q2KJ42 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=ISS]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0042802 GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004 CTD:4841
HOGENOM:HOG000231095 HOVERGEN:HBG009801 KO:K13214 OrthoDB:EOG4ZCT50
EMBL:DAAA02072840 EMBL:BC105532 IPI:IPI00699994
RefSeq:NP_001040019.1 UniGene:Bt.37860 SMR:Q2KJ42
Ensembl:ENSBTAT00000016122 GeneID:615175 KEGG:bta:615175
InParanoid:Q2KJ42 NextBio:20899485 Uniprot:Q2KJ42
Length = 470
Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 303 EVK 305
+V+
Sbjct: 172 QVE 174
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 323 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 355
>UNIPROTKB|F1PTP3 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 CTD:4841 KO:K13214
OMA:NQQYHKE EMBL:AAEX03026487 RefSeq:XP_849110.1
ProteinModelPortal:F1PTP3 Ensembl:ENSCAFT00000027037 GeneID:612773
KEGG:cfa:612773 Uniprot:F1PTP3
Length = 470
Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 303 EVK 305
+V+
Sbjct: 172 QVE 174
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 323 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 355
>UNIPROTKB|F1Q0F6 [details] [associations]
symbol:F1Q0F6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03010245
ProteinModelPortal:F1Q0F6 Ensembl:ENSCAFT00000005152 OMA:LEFEMES
Uniprot:F1Q0F6
Length = 470
Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 65 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 121
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 122 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 171
Query: 303 EVK 305
+V+
Sbjct: 172 QVE 174
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 323 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 355
>UNIPROTKB|Q15233 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0042382 "paraspeckles"
evidence=IDA] [GO:0005634 "nucleus" evidence=TAS] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0016363 "nuclear
matrix" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0016607 GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0006310 GO:GO:0016363
EMBL:CH471132 Pathway_Interaction_DB:circadianpathway GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586 EMBL:L14599
EMBL:U89867 EMBL:Y11289 EMBL:Y11290 EMBL:Y11291 EMBL:Y11292
EMBL:Y11293 EMBL:Y11294 EMBL:Y11295 EMBL:Y11296 EMBL:Y11297
EMBL:Y11298 EMBL:U02493 EMBL:AK297144 EMBL:CR456761 EMBL:AL590762
EMBL:BC002364 EMBL:BC003129 EMBL:BC012141 EMBL:BC028299
EMBL:BC069616 EMBL:BC069639 IPI:IPI00304596 IPI:IPI00922367
PIR:G01211 PIR:S29769 PIR:S41768 RefSeq:NP_001138880.1
RefSeq:NP_001138881.1 RefSeq:NP_001138882.1 RefSeq:NP_031389.3
UniGene:Hs.533282 UniGene:Hs.700344 PDB:3SDE PDBsum:3SDE
ProteinModelPortal:Q15233 SMR:Q15233 DIP:DIP-29951N IntAct:Q15233
MINT:MINT-1131452 STRING:Q15233 PhosphoSite:Q15233 DMDM:67469924
REPRODUCTION-2DPAGE:IPI00304596 SWISS-2DPAGE:Q15233 PaxDb:Q15233
PeptideAtlas:Q15233 PRIDE:Q15233 DNASU:4841 Ensembl:ENST00000276079
Ensembl:ENST00000373841 Ensembl:ENST00000373856
Ensembl:ENST00000535149 GeneID:4841 KEGG:hsa:4841 UCSC:uc004dzn.3
CTD:4841 GeneCards:GC0XP070503 HGNC:HGNC:7871 HPA:CAB022069
MIM:300084 neXtProt:NX_Q15233 PharmGKB:PA31680 HOGENOM:HOG000231095
HOVERGEN:HBG009801 InParanoid:Q15233 KO:K13214 OMA:NQQYHKE
OrthoDB:EOG4ZCT50 PhylomeDB:Q15233 GenomeRNAi:4841 NextBio:18654
PMAP-CutDB:Q15233 ArrayExpress:Q15233 Bgee:Q15233 CleanEx:HS_NONO
Genevestigator:Q15233 GermOnline:ENSG00000147140 Uniprot:Q15233
Length = 471
Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 303 EVK 305
+V+
Sbjct: 173 QVE 175
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 324 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 356
>UNIPROTKB|I3LSU1 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE Ensembl:ENSSSCT00000031783
Uniprot:I3LSU1
Length = 471
Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 172
Query: 303 EVK 305
+V+
Sbjct: 173 QVE 175
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 324 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 356
>MGI|MGI:1855692 [details] [associations]
symbol:Nono "non-POU-domain-containing, octamer binding
protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0042802 "identical protein binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1855692 GO:GO:0005730 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0016607
GO:GO:0006281 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0006310 GO:GO:0016363 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOVERGEN:HBG009801 KO:K13214
OrthoDB:EOG4ZCT50 EMBL:S64860 EMBL:AK004830 EMBL:AK013444
EMBL:AK028338 EMBL:BC005465 EMBL:BC083074 IPI:IPI00320016
IPI:IPI00471251 RefSeq:NP_001239447.1 RefSeq:NP_075633.2
UniGene:Mm.280069 PDB:2CPJ PDB:2RS8 PDBsum:2CPJ PDBsum:2RS8
ProteinModelPortal:Q99K48 SMR:Q99K48 IntAct:Q99K48 STRING:Q99K48
PhosphoSite:Q99K48 PaxDb:Q99K48 PRIDE:Q99K48
Ensembl:ENSMUST00000033673 GeneID:53610 KEGG:mmu:53610
UCSC:uc009txr.2 InParanoid:Q99K48 ChiTaRS:NONO
EvolutionaryTrace:Q99K48 NextBio:310319 Bgee:Q99K48
Genevestigator:Q99K48 GermOnline:ENSMUSG00000031311 Uniprot:Q99K48
Length = 473
Score = 128 (50.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 68 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 124
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 125 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 174
Query: 303 EVK 305
+V+
Sbjct: 175 QVE 177
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 326 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 358
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 91 (37.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD----IRTLYTACKHRGFVMISYYDIRAART 244
E S LFV N++ NV + L FEQ+G+ I T + RGF + + + A
Sbjct: 273 EGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAK 332
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKD 274
A A++ + RK+++ ++ + P++KD
Sbjct: 333 AYEAMKEHEIDGRKINLDYATGR--PANKD 360
Score = 83 (34.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 279 TLVVFNLDPSVSNED-LRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALK 332
TL V NL P +NED + ++FG G V IR E+ + ++++ V A A
Sbjct: 385 TLFVGNL-PFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYN 443
Query: 333 SLNRSDIAGKRIKLEPSRP 351
L ++I G+ I+L+ S P
Sbjct: 444 ELQGAEIDGRPIRLDFSTP 462
>RGD|1549738 [details] [associations]
symbol:Nono "non-POU domain containing, octamer-binding"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA;ISO]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1549738 GO:GO:0005730 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006310 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:BC089880 IPI:IPI00205912 RefSeq:NP_001012356.1 UniGene:Rn.8381
ProteinModelPortal:Q5FVM4 SMR:Q5FVM4 IntAct:Q5FVM4 STRING:Q5FVM4
PhosphoSite:Q5FVM4 PRIDE:Q5FVM4 Ensembl:ENSRNOT00000004911
GeneID:317259 KEGG:rno:317259 UCSC:RGD:1549738 InParanoid:Q5FVM4
NextBio:671515 Genevestigator:Q5FVM4 GermOnline:ENSRNOG00000003689
Uniprot:Q5FVM4
Length = 476
Score = 128 (50.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 71 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 127
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 128 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 177
Query: 303 EVK 305
+V+
Sbjct: 178 QVE 180
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 329 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 361
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 102 (41.0 bits), Expect = 0.00021, P = 0.00021
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAA 330
++G L V L + + L Q+F YG++ E+ RET R F+ F ++ A+ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 331 LKSLNRSDIAGKRIKLEPSRPGGARRN 357
+ ++N + G++I+++ + R+
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRS 90
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 122 (48.0 bits), Expect = 0.00021, P = 0.00021
Identities = 47/174 (27%), Positives = 81/174 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYG---DIR-TLYTACKHRGFVMISYYDIRAARTAMRALQ 250
L +N+ ++R+LFE+YG DI +++ ++RG V I A TA+++L+
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 155
Query: 251 NKPLRRRKLDIHFS--------IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA-Y 301
+ R+L + ++ P++ PS + L V NL + L++ F A
Sbjct: 156 SCEYEGRRLKVDYAKTKKKKTYAPRETPSP--VPTFNLFVANLAFEARAKHLKEFFDADT 213
Query: 302 GEV--KEI--RETPHKRH-HKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350
G V E+ E P + + F+ F + AEAAL D G+ I+L S+
Sbjct: 214 GNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSK 267
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 96 (38.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P+ T+++ N+N ++ EL+ ALF Q+G DI L T K RG + + ++ ++
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM-KMRGQAFVIFKELGSST 63
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 64 NALRQLQGFPFYGKPMRIQYA 84
Score = 65 (27.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 269 NPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAA 327
NP D ++ N P +NE L +F + KE+R P + F+EF + A
Sbjct: 134 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 193
Query: 328 EAALKSL 334
AA +L
Sbjct: 194 GAARDAL 200
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 241
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 242 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSDKDLNQG 278
A A+ L K + R+++I F+ + P+ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 122 (48.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 44/156 (28%), Positives = 74/156 (47%)
Query: 192 SRT-LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHR-GFVMISYYDIRAARTA 245
S+T L V + N+ ELR+LF G++ + H G+ ++Y + A A
Sbjct: 32 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERA 91
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 305
+ L L+ + + + ++ P + S KD N L + L +++ +D+ ++FG YG +
Sbjct: 92 ISTLNGLRLQSKTIKVSYARPSSD-SIKDAN---LYISGLPKTMTQKDVEEMFGRYGRII 147
Query: 306 EIRETPHK-----RHHKFIEFYDVRA-AEAALKSLN 335
R + R FI F D RA AE A+K LN
Sbjct: 148 NSRVLVDQASGLSRGVAFIRF-DKRAEAEDAIKDLN 182
Score = 44 (20.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 392 QFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLEK---IAPIGKDQGR 448
+F P+ H ++ FR SP + +HM G++ + P S+ I +G+D
Sbjct: 220 RFGGPVHH-------QAQRFR-FSPMSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADE 271
Query: 449 GSLME 453
G L +
Sbjct: 272 GILWQ 276
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 48/211 (22%), Positives = 86/211 (40%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMR 247
R LFV ++ + LR+ F QYG++ T + RGF + + D T +
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL- 113
Query: 248 ALQNKPLRRRKLDIHFSIPKDN-PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE 306
A + L R +D PK P + + V + + +LR+ F +G V E
Sbjct: 114 ASRPHTLDGRNID-----PKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTE 168
Query: 307 I-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMXX 361
+ E R FI F D ++ + A+ +++ DI GK+++++ + P ++
Sbjct: 169 VVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPRDSKSQ--AP 225
Query: 362 XXXXXXXXXSRILQHQVGSPITNSPPGNWVQ 392
SR++ + PP W Q
Sbjct: 226 GQPGASQWGSRVVPNAANG-WAGQPPPTWQQ 255
>UNIPROTKB|Q5ZIZ5 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016363
GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:AADN02013229 EMBL:AADN02013230 EMBL:AJ720639 IPI:IPI00603370
RefSeq:NP_001026703.1 UniGene:Gga.4549 SMR:Q5ZIZ5
Ensembl:ENSGALT00000008838 GeneID:428701 KEGG:gga:428701
InParanoid:Q5ZIZ5 NextBio:20829624 Uniprot:Q5ZIZ5
Length = 473
Score = 129 (50.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 48/153 (31%), Positives = 72/153 (47%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 66 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 122
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 123 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQFVSNELLEEAFSVFG 172
Query: 303 EVKE---IRETPHKRHHK-FIEFYDVRAAEAAL 331
+V+ I + + K +EF AA AL
Sbjct: 173 QVERAVVIVDDRGRSSGKGIVEFSGKPAARKAL 205
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ ++ E E+ R E+ R
Sbjct: 324 RRMEELHNQEVQKRKQLEIRQEEERRRREEEMR 356
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 99 (39.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P++++++++IN ++ EL+ LF Q+G D+ L T K RG + + ++ AA
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTP-KLRGQAWVVFTEVTAAS 66
Query: 244 TAMRALQNKPLRRRKLDIHFSIPKDN 269
A+R +QN P + + I ++ K +
Sbjct: 67 NAVRQMQNFPFYDKPMRIQYAKSKSD 92
Score = 62 (26.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 265 IPKDNPSDKDLNQGTLVVF--NLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 322
+P PS +D ++F NL ++ L+ +F Y KEIR K F+E+
Sbjct: 140 VPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYE 199
Query: 323 DVRAAEAALKSL 334
D + A+++L
Sbjct: 200 DDVQSSMAMQAL 211
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 96 (38.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P+ T+++ N+N ++ EL+ ALF Q+G DI L T K RG + + ++ ++
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM-KMRGQAFVIFKELGSST 63
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 64 NALRQLQGFPFYGKPMRIQYA 84
Score = 65 (27.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 269 NPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAA 327
NP D ++ N P +NE L +F + KE+R P + F+EF + A
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 200
Query: 328 EAALKSL 334
AA +L
Sbjct: 201 GAARDAL 207
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 96 (38.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P+ T+++ N+N ++ EL+ ALF Q+G DI L T K RG + + ++ ++
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM-KMRGQAFVIFKELGSST 63
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 64 NALRQLQGFPFYGKPMRIQYA 84
Score = 65 (27.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 269 NPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAA 327
NP D ++ N P +NE L +F + KE+R P + F+EF + A
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 200
Query: 328 EAALKSL 334
AA +L
Sbjct: 201 GAARDAL 207
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 96 (38.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P+ T+++ N+N ++ EL+ ALF Q+G DI L T K RG + + ++ ++
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM-KMRGQAFVIFKELGSST 63
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 64 NALRQLQGFPFYGKPMRIQYA 84
Score = 65 (27.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 269 NPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAA 327
NP D ++ N P +NE L +F + KE+R P + F+EF + A
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 200
Query: 328 EAALKSL 334
AA +L
Sbjct: 201 GAARDAL 207
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 96 (38.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P+ T+++ N+N ++ EL+ ALF Q+G DI L T K RG + + ++ ++
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM-KMRGQAFVIFKELGSST 63
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 64 NALRQLQGFPFYGKPMRIQYA 84
Score = 65 (27.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 269 NPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAA 327
NP D ++ N P +NE L +F + KE+R P + F+EF + A
Sbjct: 141 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 200
Query: 328 EAALKSL 334
AA +L
Sbjct: 201 GAARDAL 207
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 124 (48.7 bits), Expect = 0.00025, P = 0.00025
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 271 SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 330
SD + T+ V +DP V +EDLRQ F +GEV ++ P + F++F D ++AE A
Sbjct: 314 SDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK-IPVGKGCGFVQFADRKSAEDA 372
Query: 331 LKSLNRSDIAGKRIKLEPSR 350
++SLN + I ++L R
Sbjct: 373 IESLNGTVIGKNTVRLSWGR 392
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 126 (49.4 bits), Expect = 0.00025, P = 0.00025
Identities = 38/174 (21%), Positives = 83/174 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDI---RTLYTACKHRGFVMISYYDIRAARTAMRALQN 251
+F++N+ +++++ L F +G I + +Y RGF + + AA+ A+ +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + HF + ++ + L + V NL + + L+ +F +G+ V
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSV 220
Query: 305 KEIRETP-HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRN 357
K +R++ R FI F A+ A+ +N +++G+ + + ++ R+N
Sbjct: 221 KVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQN 274
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 100 (40.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 280 LVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338
L+V NL+P V+ + L +FG YG+V+ ++ +K+ + +E D A+ A+ LN
Sbjct: 363 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHK 422
Query: 339 IAGKRIKLEPSR 350
+ GK +++ S+
Sbjct: 423 LHGKSVRITLSK 434
Score = 73 (30.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRAL 249
PSR + VR + S+V + E+ +L +G + L K++ F+ +S + AA T +
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEE--AANTMVNYY 113
Query: 250 QN-KP-LRRRKLDIHFSIPKDNPSDKDLNQ 277
+ P LR + + I FS K+ +D NQ
Sbjct: 114 TSVAPVLRGQPIYIQFSNHKELKTDSSPNQ 143
>UNIPROTKB|G3N361 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:NQQYHKE EMBL:DAAA02072840
Ensembl:ENSBTAT00000063337 Uniprot:G3N361
Length = 528
Score = 128 (50.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 40/123 (32%), Positives = 61/123 (49%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE + + SR LFV N+ ++ + E+R LFE+YG ++ K +GF I A
Sbjct: 123 GEKTFTQR-SR-LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLA 179
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L N PLR ++L + F+ + +L V NL VSNE L + F +G
Sbjct: 180 EIAKVELDNMPLRGKQLRVRFAC----------HSASLTVRNLPQYVSNELLEEAFSVFG 229
Query: 303 EVK 305
+V+
Sbjct: 230 QVE 232
Score = 43 (20.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDTR 694
RR+E + ++ +KQ +L E E+ R E+ R
Sbjct: 381 RRMEELHNQEVQKRKQLELRQEEERRRREEEMR 413
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 96 (38.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 243
P+ T+++ N+N ++ EL+ ALF Q+G DI L T K RG + + ++ ++
Sbjct: 15 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTM-KMRGQAFVIFKELGSST 73
Query: 244 TAMRALQNKPLRRRKLDIHFS 264
A+R LQ P + + I ++
Sbjct: 74 NALRQLQGFPFYGKPMRIQYA 94
Score = 65 (27.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 269 NPSDKDLNQGTLVVFNLDPSVSNED-LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAA 327
NP D ++ N P +NE L +F + KE+R P + F+EF + A
Sbjct: 146 NPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQA 205
Query: 328 EAALKSL 334
AA +L
Sbjct: 206 GAARDAL 212
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 44/157 (28%), Positives = 71/157 (45%)
Query: 192 SRT-LFVRNINSNVEDSELRALFEQYGDI------RTLYTACKHRGFVMISYYDIRAART 244
S+T L V + N+ EL++LF G+I R T + G+ ++Y D + A
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEK 95
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV 304
A+ L L+ + + + ++ PS + L V L +++ ++L Q+F YG +
Sbjct: 96 AINTLNGLRLQTKTIKVSYA----RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 151
Query: 305 KEIR-----ETPHKRHHKFIEFYDVRA-AEAALKSLN 335
R T R FI F D R AE A+K LN
Sbjct: 152 ITSRILVDQVTGISRGVGFIRF-DKRIEAEEAIKGLN 187
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 122 (48.0 bits), Expect = 0.00029, P = 0.00029
Identities = 45/179 (25%), Positives = 79/179 (44%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL---- 222
N L S+ +G P + + L V + ++ D EL ALF G I T
Sbjct: 101 NNLCGLSLGSGGSDDLMNDPRASNTN--LIVNYLPQDMTDRELYALFRAIGPINTCRIMR 158
Query: 223 -YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV 281
Y G+ + + ++ A++ L +R ++L + ++ P S KD N L
Sbjct: 159 DYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP-GGESIKDTN---LY 214
Query: 282 VFNLDPSVSNEDLRQIFGAYGEVKE---IRE--TPHKRHHKFIEFYDVRAAEAALKSLN 335
V NL +++++ L IFG YG + + +R+ T R F+ + A+ A+ +LN
Sbjct: 215 VTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 111 (44.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 35/112 (31%), Positives = 53/112 (47%)
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKDLN----QGTLVVFNLDPSVSNEDLRQIFGA 300
A + L+NK RK + S PK P K + L++ NL S +DL+ +F
Sbjct: 78 AKKKLKNKSKETRKNENSES-PKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTH 136
Query: 301 YGEVKEIRETPHK-----RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347
YG V E+ P K R FI+F ++ A ALK N +I G+ + ++
Sbjct: 137 YGTVLEVN-IPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVD 187
Score = 54 (24.1 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-------ACKHRGFVMISYY-DIRAA 242
TLFV + + +L LF Q G ++ + AC+ G+V S D++ A
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRA 61
Score = 53 (23.7 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 31/131 (23%), Positives = 57/131 (43%)
Query: 655 EGLYERGRSRRIENNNGNQLDSKKQFQL-ELEKIRSGED--TRTTLMIKNIP----NKYT 707
EGL G ++ E + + +++F+L + +K+++ ++T L + N+P +K
Sbjct: 435 EGLIRAG-TKAAEGVSAADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKSVDDKQL 493
Query: 708 SKMLLAAIDENHKGTY--------DFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFN 759
K+LL A KG D + K + ++GYAF+ H + FN
Sbjct: 494 RKLLLQATG-GEKGVRIKECRVMRDLKAVHGKMKGQ-SLGYAFVEFQKHEHALRALRHFN 551
Query: 760 GKKWEKFNSEK 770
E F +K
Sbjct: 552 NNP-ETFGPQK 561
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 43/182 (23%), Positives = 82/182 (45%)
Query: 175 PNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK-----HR 229
P + G+H + T++V +++ + + L LF Q G + +Y H+
Sbjct: 7 PGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGT-LVVFNLDPS 288
+ I Y A A++ L L + + ++ K + K L+ G L + NLDP
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVN----KASQDKKSLDVGANLFIGNLDPD 122
Query: 289 VSNEDLRQIFGAYGEV----KEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342
V + L F A+G + K +R+ T + R FI + A++AA++S+ ++ +
Sbjct: 123 VDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNR 182
Query: 343 RI 344
+I
Sbjct: 183 QI 184
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 96 (38.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 280 LVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338
L+V NL+P V+ + L +FG YG+V+ ++ +K+ + ++ D A+ A+ LN
Sbjct: 340 LLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGQK 399
Query: 339 IAGKRIKLEPSR 350
+ GK I++ S+
Sbjct: 400 LHGKPIRITLSK 411
Score = 76 (31.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRAL 249
PSR + VR + S+V ++E+ +L +G + L K++ F+ ++ + AA T +
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEE--AANTMVNYY 84
Query: 250 QN-KP-LRRRKLDIHFSIPKDNPSDKDLNQ-GTLVV 282
P LR + + I FS K+ +D NQ G LV+
Sbjct: 85 TTVTPVLRSQPIYIQFSNHKELKTDNSPNQAGCLVL 120
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 48/182 (26%), Positives = 77/182 (42%)
Query: 166 GNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI------ 219
G G ++PNG + G + + L V + N+ E ++LF GDI
Sbjct: 14 GGGPAGPALPNGP--LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71
Query: 220 RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGT 279
R T + G+ ++Y D A A+ L L+ + + + ++ PS +
Sbjct: 72 RDKITG-QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDAN 126
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRA-AEAALKS 333
L V L ++S +++ Q+F YG + R T R FI F D R AE A+K
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF-DKRIEAEEAIKG 185
Query: 334 LN 335
LN
Sbjct: 186 LN 187
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 48/182 (26%), Positives = 77/182 (42%)
Query: 166 GNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI------ 219
G G ++PNG + G + + L V + N+ E ++LF GDI
Sbjct: 14 GGGPAGPALPNGP--LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71
Query: 220 RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGT 279
R T + G+ ++Y D A A+ L L+ + + + ++ PS +
Sbjct: 72 RDKITG-QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDAN 126
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRA-AEAALKS 333
L V L ++S +++ Q+F YG + R T R FI F D R AE A+K
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRF-DKRIEAEEAIKG 185
Query: 334 LN 335
LN
Sbjct: 186 LN 187
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 115 (45.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 251 NKPLRRRKLDIHFSIPK-DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309
N P+ + L ++P+ D P DK + TL + L +V++ +LR F +GE++ I
Sbjct: 206 NDPVANKLLMRASTMPRLDVPDDKSIT--TLYIGGLGENVTDSELRNHFYQFGEIRTITI 263
Query: 310 TPHKRHHKFIEFYDVRAAE-AALKSLNRSDIAGKRIKLEPSRPGGAR 355
++ FI+F +AAE AA KS N+ I G+R+ ++ R AR
Sbjct: 264 V-QRQQCAFIQFATRQAAETAAEKSFNKLIINGRRLNVKWGRSQAAR 309
Score = 53 (23.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 593 GIGQNDGSFMVNMGSRASVNPGIT---VPRNLSDNGSS---FRVMSSPRLSPVFLGNGPY 646
G G+ DG + G R PG+ P +SD +S F + +P + + LG P
Sbjct: 310 GKGEKDG--VTESGIRLEPVPGLPGALPPPPVSDEDASTNYFNLAPTPSPAVMNLGLPPP 367
Query: 647 PGLT 650
PG+T
Sbjct: 368 PGVT 371
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 37/177 (20%), Positives = 85/177 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV----------VF--NLDPSVSNED 293
+ A+ + + +++ ++++ + KD + T+V VF +L P ++ ED
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 294 LRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
++ F +G + + R T + + F+ F++ AE A++ + + G++I+
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 37/177 (20%), Positives = 85/177 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV----------VF--NLDPSVSNED 293
+ A+ + + +++ ++++ + KD + T+V VF +L P ++ ED
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 294 LRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
++ F +G + + R T + + F+ F++ AE A++ + + G++I+
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 122 (48.0 bits), Expect = 0.00034, P = 0.00034
Identities = 37/177 (20%), Positives = 85/177 (48%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTA 245
E P +TL+V N++ +V ++ + LF Q G + G + + +++ R A A
Sbjct: 4 EMP-KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAA 62
Query: 246 MRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV----------VF--NLDPSVSNED 293
+ A+ + + +++ ++++ + KD + T+V VF +L P ++ ED
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 294 LRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
++ F +G + + R T + + F+ F++ AE A++ + + G++I+
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 100 (40.3 bits), Expect = 0.00035, P = 0.00035
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 285 LDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
L +V +D+++ F YG + EI K + F+EF D R A+ A+ LN ++ G+R+
Sbjct: 9 LSYNVREKDIQRFFSGYGRLLEI---DLKNGYGFVEFEDSRDADDAVYELNGKELCGERV 65
Query: 345 KLEPSRPGGARRN 357
+E +R G RR+
Sbjct: 66 IVEHAR--GPRRD 76
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 112 (44.5 bits), Expect = 0.00036, P = 0.00036
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 241
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 242 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSDKDLNQG 278
A A+ L K + R+++I F+ + P+ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>UNIPROTKB|E1C9H9 [details] [associations]
symbol:MANF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 OMA:KRDSERN GeneTree:ENSGT00530000063730
EMBL:AADN02056521 IPI:IPI00572917 ProteinModelPortal:E1C9H9
Ensembl:ENSGALT00000003739 Uniprot:E1C9H9
Length = 557
Score = 124 (48.7 bits), Expect = 0.00036, P = 0.00036
Identities = 41/165 (24%), Positives = 78/165 (47%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG----FVMISYYDIRAART 244
+ +R LF+ N++ NV + ELR FE+YG I + RG + + + ++ A
Sbjct: 6 QRATRNLFIGNLDHNVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHR 65
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV 304
A A+ + + R + I + K NP+ + L V L PS S L + F +G +
Sbjct: 66 AKVAMSGRVVGRNPIKIGYG--KANPTTR------LWVGGLGPSTSLAALAREFDRFGSI 117
Query: 305 KEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLE 347
+ I + +I++ + AA+AA + + G +R++++
Sbjct: 118 RTI-DYVKGDSFAYIQYESLDAAQAACAQMRGFPLGGPERRLRVD 161
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 123 (48.4 bits), Expect = 0.00037, P = 0.00037
Identities = 40/169 (23%), Positives = 79/169 (46%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAA 242
E R L+V ++ V + L+ +FE G + ++ K + + + D AA
Sbjct: 86 EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAA 145
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDL-NQGTLVVFNLDPSVSNEDLRQIFGAY 301
AM+ L + + + ++ ++++ + + +D N + V +L V++E L Q F A+
Sbjct: 146 ERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAF 205
Query: 302 GEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
G V E R +T R + F+ F + AE AL S++ + + I+
Sbjct: 206 GSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIR 254
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 49/211 (23%), Positives = 87/211 (41%)
Query: 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG----FVMISYYDIRA 241
P E P+ +FVRN+ + + L F QYG++ A RG F I + A
Sbjct: 67 PRQEQPNG-IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYFETPEA 125
Query: 242 ARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKD-LNQ------GTLVVFNLDPSVSNEDL 294
A+ A N R++++ I P ++D +NQ +L + N+ ++ L
Sbjct: 126 AQKACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERTPTSSLYIGNIPYESTDAAL 185
Query: 295 RQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349
+F +K++R T R +F DV +A A++ + ++ G+ ++++ S
Sbjct: 186 NNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKVKLMELMGRTLRVDYS 245
Query: 350 RPGGARRNLMXXXXXXXXXXXSRILQHQVGS 380
P R M SR + GS
Sbjct: 246 TPRVPRNERMQTASGSRDSRDSRDSRDSRGS 276
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 38/172 (22%), Positives = 78/172 (45%)
Query: 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK-----HRGFVMISY-YD 238
H Y + TL++ N+++ V++ L LF Q G+++ ++ H G+ + Y Y+
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 239 IRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF 298
A L L + L + + D N L + NLD V + L IF
Sbjct: 72 YECEYAA-NILNMTKLFGKALRCNKATQDKRSFDVGAN---LFIGNLDDEVDEKMLFDIF 127
Query: 299 GAYGEVKEIR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
++G++ ++ E + H FI + + +++ A++++N I K++ +
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHI 179
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 38/172 (22%), Positives = 78/172 (45%)
Query: 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK-----HRGFVMISY-YD 238
H Y + TL++ N+++ V++ L LF Q G+++ ++ H G+ + Y Y+
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 239 IRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF 298
A L L + L + + D N L + NLD V + L IF
Sbjct: 72 YECEYAA-NILNMTKLFGKALRCNKATQDKRSFDVGAN---LFIGNLDDEVDEKMLFDIF 127
Query: 299 GAYGEVKEIR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
++G++ ++ E + H FI + + +++ A++++N I K++ +
Sbjct: 128 SSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHI 179
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 124 (48.7 bits), Expect = 0.00039, P = 0.00039
Identities = 35/161 (21%), Positives = 77/161 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L F +G+I + C +G+ + + AA A+ +
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 89
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + F K+ ++ K + + N V +E+LR++F +G+ V
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 149
Query: 305 KEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
K +R+ K + F+ + A A++ +N +++GK I
Sbjct: 150 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 190
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 48/182 (26%), Positives = 77/182 (42%)
Query: 166 GNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI------ 219
G G ++PNG + G + + L V + N+ E ++LF GDI
Sbjct: 14 GGGPAGPALPNGP--LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLV 71
Query: 220 RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGT 279
R T + G+ ++Y D A A+ L L+ + + + ++ PS +
Sbjct: 72 RDKITG-QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDAN 126
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRA-AEAALKS 333
L V L ++S +++ Q+F YG + R T R FI F D R AE A+K
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF-DKRIEAEEAIKG 185
Query: 334 LN 335
LN
Sbjct: 186 LN 187
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 131 (51.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 34/161 (21%), Positives = 78/161 (48%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KH--RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L F +G+I + C +H RG+ + + AA A++ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI 307
L RK+ + HF ++ + K + + + N + ++ LR+IF A+G +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 308 R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
+ +T R F+ + + A+ A+ +N ++ G+ I
Sbjct: 221 KVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Score = 40 (19.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 606 GSRASVNPGI--TVP--------RNLSDNGSSFRVMSSPRLSPVFLGNGPYPGLTPANI 654
G+RA VNP I T+P RN+ G++ + + P L G P LT +++
Sbjct: 492 GARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQV--MEPAVLMQGQEP-LTASSL 547
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 121 (47.7 bits), Expect = 0.00043, P = 0.00043
Identities = 35/173 (20%), Positives = 83/173 (47%)
Query: 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG---FVMISYYDIRAARTAMRAL 249
+TL+V N++ +V ++ + LF Q G + G + + +++ R A A+ A+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLV----------VF--NLDPSVSNEDLRQI 297
+ + +++ ++++ + KD + T+V VF +L P ++ ED++
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 298 FGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
F +G + + R T + + F+ F++ AE A++ + + G++I+
Sbjct: 122 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 174
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 124 (48.7 bits), Expect = 0.00043, P = 0.00043
Identities = 35/161 (21%), Positives = 77/161 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L F +G+I + C +G+ + + AA A+ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + F K+ ++ K + + N V +E+LR++F +G+ V
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 305 KEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
K +R+ K + F+ + A A++ +N +++GK I
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 99 (39.9 bits), Expect = 0.00044, P = 0.00044
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSL 334
L V NL+ V + DL + F AYG VK R T R F+E + A+AA+ L
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 335 NRSDIAGKRIKLEPSRP 351
N ++ G+ + + +RP
Sbjct: 65 NGKEMDGRNLMVNEARP 81
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 124 (48.7 bits), Expect = 0.00046, P = 0.00046
Identities = 35/161 (21%), Positives = 77/161 (47%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L F +G+I + C +G+ + + AA A+ +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE---V 304
L RK+ + F K+ ++ K + + N V +E+LR++F +G+ V
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 305 KEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
K +R+ K + F+ + A A++ +N +++GK I
Sbjct: 221 KVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 123 (48.4 bits), Expect = 0.00048, P = 0.00048
Identities = 40/173 (23%), Positives = 80/173 (46%)
Query: 192 SRTLFVRNINSNVEDSELRALFEQYG---DIRTLYTACKHRG--FVMISYYDIRAARTAM 246
S +L+V ++ V + L +F Q G +IR R + ++YY+ A A+
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 247 RALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-- 304
L N P+R + I +S + +PS + G + + NLD + ++ L F A+G +
Sbjct: 69 DTLNNTPIRGKACRIMWS--QRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILS 126
Query: 305 -KEIRETPHK-RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355
K + + + + F+ + +A+ A+ +N I G+++ + P + R
Sbjct: 127 CKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKER 179
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 120 (47.3 bits), Expect = 0.00049, P = 0.00049
Identities = 37/108 (34%), Positives = 53/108 (49%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N+ + E+R+LFEQYG + K+ GFV I D AA A+R L + L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLEC-DIIKNYGFVHIE--DKTAAEDAIRNLHHYKL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
+++ S K S K L V N+ P+ +N+ LR F YG
Sbjct: 61 HGVNINVEASKNKSKTSTK------LHVGNISPTCTNKSLRSKFLCYG 102
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 65/274 (23%), Positives = 108/274 (39%)
Query: 173 SVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI------RTLYTAC 226
++PNG + G + + L V + N+ E ++LF GDI R T
Sbjct: 21 ALPNGP--LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG- 77
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLD 286
+ G+ ++Y D A A+ L L+ + + + ++ PS + L V L
Sbjct: 78 QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANLYVSGLP 133
Query: 287 PSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRA-AEAALKSLNRSDIA 340
++S +++ Q+F YG + R T R FI F D R AE A+K LN
Sbjct: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF-DKRIEAEEAIKGLNGQKPL 192
Query: 341 GKR----IKL--EPSRPGGARRNLMXXXXXXXXXXXSRILQHQVGSPITNSPPGNWVQFS 394
G +K PS+ G + L+ + L HQ N + +
Sbjct: 193 GAAEPITVKFANNPSQKTG--QALLTHLYQSSARRYAGPLHHQT----QRFRLDNLLNMA 246
Query: 395 SPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASI 428
++ +PL I++ SP + M GLA +
Sbjct: 247 YGVKSSPLSLIAR------FSPIAIDGMSGLAGV 274
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 120 (47.3 bits), Expect = 0.00052, P = 0.00052
Identities = 65/274 (23%), Positives = 108/274 (39%)
Query: 173 SVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI------RTLYTAC 226
++PNG + G + + L V + N+ E ++LF GDI R T
Sbjct: 21 ALPNGP--LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG- 77
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLD 286
+ G+ ++Y D A A+ L L+ + + + ++ PS + L V L
Sbjct: 78 QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANLYVSGLP 133
Query: 287 PSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRA-AEAALKSLNRSDIA 340
++S +++ Q+F YG + R T R FI F D R AE A+K LN
Sbjct: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF-DKRIEAEEAIKGLNGQKPL 192
Query: 341 GKR----IKL--EPSRPGGARRNLMXXXXXXXXXXXSRILQHQVGSPITNSPPGNWVQFS 394
G +K PS+ G + L+ + L HQ N + +
Sbjct: 193 GAAEPITVKFANNPSQKTG--QALLTQLYQSSARRYAGPLHHQT----QRFRLDNLLNMA 246
Query: 395 SPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASI 428
++ +PL I++ SP + M GLA +
Sbjct: 247 YGVKSSPLSLIAR------FSPIAIDGMSGLAGV 274
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 123 (48.4 bits), Expect = 0.00052, P = 0.00052
Identities = 52/196 (26%), Positives = 87/196 (44%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTL------YTACKHRGFVMISYYDIRAARTAMRA 248
LF+ I N+E+ +L+ LFEQ+G I L YT H+G ++Y +A A A
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGM-HKGCAFLTYCARESAIKAQNA 196
Query: 249 L-QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE- 306
L + K L I P D+ S + + L V L+ + ED+ ++F YG ++E
Sbjct: 197 LHEQKTLPGMTRPIQVK-PADSESRGEDRK--LFVGMLNKQQTEEDVYRLFEPYGVIEEC 253
Query: 307 -IRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMXXXX 363
+ P + + F++F A++A+ +L+ S + P GA +L+
Sbjct: 254 TVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTMPTGS--DSLLPQGASSSLVVKFA 311
Query: 364 XXXXXXXSRILQHQVG 379
R +Q VG
Sbjct: 312 DTDKERTIRRMQQMVG 327
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 112 (44.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 37/167 (22%), Positives = 72/167 (43%)
Query: 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAART 244
E R L+V N++ + + L+ F+ G I + K+ + + Y+ A
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANI 130
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAY--- 301
A++ L K + + I+++ S D L V +L+ +V +E LR F +
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN--LFVGDLNVNVDDETLRNAFKDFPSY 188
Query: 302 --GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
G V +T R + F+ F A+ A+ S+ D+ G+ +++
Sbjct: 189 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 235
Score = 55 (24.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 26/115 (22%), Positives = 47/115 (40%)
Query: 687 IRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINML 746
IRS TT I NIP+ + ++ L + +N DF + P K C + Y
Sbjct: 333 IRSAPPRVTTAYIGNIPH-FATEADLIPLFQNFGFILDFKHYPE--KGCCFIKYDTHEQA 389
Query: 747 SPLHIIPFYEAFNGKKWEK-FNSEKVASLAYARIQGRAALVAHFQNSSLMNEDKR 800
+ + F G+ + E+ + + QG L+ + Q +M+E ++
Sbjct: 390 AVCIVALANFPFQGRNLRTGWGKERSNFMPQQQQQGGQPLIMNDQQQPVMSEQQQ 444
>UNIPROTKB|F1LM18 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00562850
Ensembl:ENSRNOT00000044865 ArrayExpress:F1LM18 Uniprot:F1LM18
Length = 554
Score = 97 (39.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 280 LVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338
L+V NL+P V+ + L +FG YG+V+ ++ +K+ + ++ D A+ A+ LN
Sbjct: 362 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHK 421
Query: 339 IAGKRIKLEPSR 350
+ GK +++ S+
Sbjct: 422 LHGKSVRITLSK 433
Score = 73 (30.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRAL 249
PSR + VR + S+V + E+ +L +G + L K++ F+ +S + AA T +
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEE--AANTMVNYY 113
Query: 250 QN-KP-LRRRKLDIHFSIPKDNPSDKDLNQ 277
+ P LR + + I FS K+ +D NQ
Sbjct: 114 TSVAPVLRGQPIYIQFSNHKELKTDSSPNQ 143
>UNIPROTKB|Q6P736 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract binding protein 1,
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:62047 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474029 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ IPI:IPI00390239 UniGene:Rn.64440 EMBL:BC061858
RefSeq:NP_001257986.1 RefSeq:NP_071961.2 SMR:Q6P736 STRING:Q6P736
Ensembl:ENSRNOT00000030357 GeneID:29497 KEGG:rno:29497
InParanoid:Q6P736 Genevestigator:Q6P736 Uniprot:Q6P736
Length = 556
Score = 97 (39.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 280 LVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338
L+V NL+P V+ + L +FG YG+V+ ++ +K+ + ++ D A+ A+ LN
Sbjct: 364 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHK 423
Query: 339 IAGKRIKLEPSR 350
+ GK +++ S+
Sbjct: 424 LHGKSVRITLSK 435
Score = 73 (30.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRAL 249
PSR + VR + S+V + E+ +L +G + L K++ F+ +S + AA T +
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTEE--AANTMVNYY 113
Query: 250 QN-KP-LRRRKLDIHFSIPKDNPSDKDLNQ 277
+ P LR + + I FS K+ +D NQ
Sbjct: 114 TSVAPVLRGQPIYIQFSNHKELKTDSSPNQ 143
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 241
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 242 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSDKDLNQG 278
A A+ L K + R+++I F+ + P+ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
Identities = 28/98 (28%), Positives = 48/98 (48%)
Query: 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-----KHRGFVMISYYDIRA 241
Y P+ +LFVRN+ + +LR F +YG I +Y + RGF + + D+R
Sbjct: 4 YLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRD 63
Query: 242 ARTAMRALQNKPLRRRKLDIHFSI-PKDNPSDKDLNQG 278
A A+ L K + R+++I F+ + P+ +G
Sbjct: 64 AEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEG 101
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 119 (46.9 bits), Expect = 0.00056, P = 0.00056
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 267 KDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEF 321
K + D +Q ++ V N+ VS + +R IF G V I RET + + FIEF
Sbjct: 7 KSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEF 66
Query: 322 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353
D++ AE A+++LN +++G+ ++++ S GG
Sbjct: 67 PDIQTAEVAIRNLNGYELSGRILRVD-SAAGG 97
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 100 (40.3 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAART 244
P+ T+++ N+N ++ EL+ A+F Q+G I + + K RG + + ++ +A
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 245 AMRALQNKPLRRRKLDIHFS 264
A+R++Q P + + I ++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 61 (26.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNE-DLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323
+P P ++ L + NL P +NE L +F + KE+R P + F+EF +
Sbjct: 194 MPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDN 252
Query: 324 VRAAEAALKSL 334
A AA +L
Sbjct: 253 EVQAGAARDAL 263
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 98 (39.6 bits), Expect = 0.00057, P = 0.00057
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDV 324
P D + +L V NL S + LR++F YG V ++ R T R F+ F+D
Sbjct: 7 PPDVE-GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 325 RAAEAALKSLNRSDIAGKRIKLEPSRPG 352
R AE A+ +++ + + G+ ++++ +R G
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYG 93
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 98 (39.6 bits), Expect = 0.00057, P = 0.00057
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDV 324
P D + +L V NL S + LR++F YG V ++ R T R F+ F+D
Sbjct: 7 PPDVE-GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 65
Query: 325 RAAEAALKSLNRSDIAGKRIKLEPSRPG 352
R AE A+ +++ + + G+ ++++ +R G
Sbjct: 66 RDAEDAMDAMDGAVLDGRELRVQMARYG 93
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 100 (40.3 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAART 244
P+ T+++ N+N ++ EL+ A+F Q+G I + + K RG + + ++ +A
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 245 AMRALQNKPLRRRKLDIHFS 264
A+R++Q P + + I ++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 61 (26.5 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNE-DLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323
+P P ++ L + NL P +NE L +F + KE+R P + F+EF +
Sbjct: 195 MPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDN 253
Query: 324 VRAAEAALKSL 334
A AA +L
Sbjct: 254 EVQAGAARDAL 264
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 100 (40.3 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAART 244
P+ T+++ N+N ++ EL+ A+F Q+G I + + K RG + + ++ +A
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 245 AMRALQNKPLRRRKLDIHFS 264
A+R++Q P + + I ++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 61 (26.5 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNE-DLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323
+P P ++ L + NL P +NE L +F + KE+R P + F+EF +
Sbjct: 195 MPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDN 253
Query: 324 VRAAEAALKSL 334
A AA +L
Sbjct: 254 EVQAGAARDAL 264
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 100 (40.3 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAART 244
P+ T+++ N+N ++ EL+ A+F Q+G I + + K RG + + ++ +A
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 245 AMRALQNKPLRRRKLDIHFS 264
A+R++Q P + + I ++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYA 87
Score = 61 (26.5 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNE-DLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323
+P P ++ L + NL P +NE L +F + KE+R P + F+EF +
Sbjct: 195 MPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDN 253
Query: 324 VRAAEAALKSL 334
A AA +L
Sbjct: 254 EVQAGAARDAL 264
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 127 (49.8 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 38/172 (22%), Positives = 82/172 (47%)
Query: 182 AGEHPYGEHPS--RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG-FVMISYYD 238
+G P G PS R+++V NI++ V + L+ +F G + + K + + + Y+D
Sbjct: 46 SGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFD 105
Query: 239 IRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIF 298
R+A A+ +L + L + + ++++ D + + V +L P V++ L Q F
Sbjct: 106 RRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTS-SHFNIFVGDLSPEVTDATLYQSF 164
Query: 299 GAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345
+ + R +T R F+ F + + A+ A+ +N ++ ++I+
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216
Score = 38 (18.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 597 NDGSFMVNMGSRASVNPGITVPRNLSDNGSSFRVMSSPRLSP 638
+DG +V + + +S + T+ +N S F + L+P
Sbjct: 233 SDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAP 274
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 100 (40.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAART 244
P+ T+++ N+N ++ EL+ A+F Q+G I + + K RG + + ++ +A
Sbjct: 12 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 71
Query: 245 AMRALQNKPLRRRKLDIHFS 264
A+R++Q P + + I ++
Sbjct: 72 ALRSMQGFPFYDKPMRIQYA 91
Score = 61 (26.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNE-DLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323
+P P ++ L + NL P +NE L +F + KE+R P + F+EF +
Sbjct: 198 MPPAQPLSENPPNHILFLTNL-PEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDN 256
Query: 324 VRAAEAALKSL 334
A AA +L
Sbjct: 257 EVQAGAARDAL 267
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 122 (48.0 bits), Expect = 0.00060, P = 0.00060
Identities = 46/191 (24%), Positives = 84/191 (43%)
Query: 179 GTVAGEHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIR--TLY---TACKHRGF 231
G V P G +F+ +N D L+ F Q+G+++ T+ + RGF
Sbjct: 94 GPVGEPEPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGF 153
Query: 232 VMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSN 291
+++ D + T M ++ L + +D +IP+D +K + V + +
Sbjct: 154 GFLTFKDPKTVNTVM--VKEHYLDGKIIDPKRAIPRDE-QEKT---SKIFVGGVSQEATE 207
Query: 292 EDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346
+D +Q F +G V + ++T R F+ F A EAAL +I GK I++
Sbjct: 208 QDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALS--RPLEILGKTIEV 265
Query: 347 EPSRPGGARRN 357
+ ++P G R+
Sbjct: 266 KKAQPRGNLRD 276
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 108 (43.1 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 33/112 (29%), Positives = 53/112 (47%)
Query: 245 AMRALQNKPLRRRKLDIHFSIPKDNPSDKDLN----QGTLVVFNLDPSVSNEDLRQIFGA 300
A + L+NK RK + + PK P K + L++ NL S +DL+ +F
Sbjct: 78 AKKKLRNKSKETRKNE-NAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTH 136
Query: 301 YGEVKEIRETPHK-----RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347
YG V E+ P K R F++F ++ A ALK N +I G+ + ++
Sbjct: 137 YGTVLEVN-IPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVD 187
Score = 88 (36.0 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH----RGFVMISYYDIRAARTAMRALQ 250
L +RN++ + +L+A+F YG + + K RGF + + ++ A A++
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGAN 175
Query: 251 NKPLRRRKLDIHFSIPKDNPSD 272
K ++ R + + +++ KD D
Sbjct: 176 MKEIKGRTVAVDWAVAKDKYKD 197
Score = 73 (30.8 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 260 DIHFSIPKDNPSDKDLNQG-TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHH 316
D+ S K D+ +G T+ + NL E L ++ +G++K +R P H
Sbjct: 306 DVPVSEKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHS 365
Query: 317 KFIEFYDVRAAEAALKSLNRSDIA--GKRIKLE 347
K F EAA K L + + G +KL+
Sbjct: 366 KGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 398
Score = 54 (24.1 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-------ACKHRGFVMISYY-DIRAA 242
TLFV + + +L LF Q G ++ + AC+ G+V S D++ A
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRA 61
Score = 53 (23.7 bits), Expect = 0.00062, Sum P(3) = 0.00062
Identities = 33/130 (25%), Positives = 57/130 (43%)
Query: 655 EGLYERGRSRRIENNNGNQLDSKKQFQL-ELEKIRSGED--TRTTLMIKNIP----NKYT 707
EGL G ++ E + + +++F+L + +K+++ ++T L + N+P +K
Sbjct: 435 EGLIRAG-TKAAEGVSAADMAKRERFELLKHQKLKNQNIFVSQTRLCLHNLPKAVDDKQL 493
Query: 708 SKMLLAAIDENHKGT-YDFLYLPIDFKN---KC---NVGYAFINMLSPLHIIPFYEAFNG 760
K+LL A KG + D K K ++GYAF H + FN
Sbjct: 494 RKLLLEAT-RGEKGVRIKECRVMRDLKGVHGKMKGQSLGYAFAEFQKHEHALRALRHFNN 552
Query: 761 KKWEKFNSEK 770
E F S+K
Sbjct: 553 NP-EIFGSQK 561
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 107 (42.7 bits), Expect = 0.00068, P = 0.00068
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 187 YGEHPSRT-LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTA 245
YG + T ++V N+ + EL F YG +RT++ A GF + + D R A A
Sbjct: 4 YGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDA 63
Query: 246 MRALQNKPL--RRRKLDIHFSIPKDNPSDK 273
+R L K + R ++++ +P+ + D+
Sbjct: 64 VRGLDGKVICGSRVRVELSTGMPRRSRFDR 93
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 122 (48.0 bits), Expect = 0.00071, P = 0.00071
Identities = 31/161 (19%), Positives = 75/161 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH---RGFVMISYYDIRAARTAMRALQN 251
+F++N++ ++++ L F +GDI + C RG+ + + AA A++ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 252 KPLRRRKLDI-HFSIPKDNPSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI 307
L RK+ + HF ++ + K + + + N + ++ L++IF A+G +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 308 R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344
+ + R F+ + + A+ A+ +N ++ G+ +
Sbjct: 221 KVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
>ZFIN|ZDB-GENE-030131-9530 [details] [associations]
symbol:pspc1 "paraspeckle component 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-9530 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM
OrthoDB:EOG444KKN EMBL:BC116549 IPI:IPI00650514
RefSeq:NP_001038723.1 UniGene:Dr.75397 ProteinModelPortal:Q1JPY8
SMR:Q1JPY8 STRING:Q1JPY8 Ensembl:ENSDART00000102335 GeneID:692285
KEGG:dre:692285 InParanoid:Q1JPY8 NextBio:20902486
ArrayExpress:Q1JPY8 Bgee:Q1JPY8 Uniprot:Q1JPY8
Length = 512
Score = 116 (45.9 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 42/141 (29%), Positives = 61/141 (43%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LFV N+ S++ D + + LF +YGD + ++ + RGF I A A L L
Sbjct: 78 LFVGNLPSDMADEDFKKLFFKYGDAKEVFIN-RDRGFGFIRLETRTLAEIAKAELDGTVL 136
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE----IRET 310
R + I F+ + L V NL P VSNE L Q F +G V+ + +
Sbjct: 137 GNRPIRIRFAT----------HGAALTVRNLSPVVSNELLEQAFSQFGPVERAIVIVDDR 186
Query: 311 PHKRHHKFIEFYDVRAAEAAL 331
+EF + AA AL
Sbjct: 187 GRPTGKGIVEFANKPAARKAL 207
Score = 51 (23.0 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 664 RRIENNNGNQLDSKKQFQL--ELEKIRSGEDT---RTTLMIKNIPNKYTS 708
RR+E +L +KQ +L E E+ R ED R L I+ P+ + S
Sbjct: 326 RRLEELRNQELQKRKQIELRHEEERRRREEDMIRHREQLDIRRQPDGFKS 375
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 119 (46.9 bits), Expect = 0.00072, P = 0.00072
Identities = 40/155 (25%), Positives = 72/155 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
+F+ N++ +LR+LF ++G ++ K+ GFV + + A A+R L + L
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKEC-DVLKNYGFVHMD--SKKEAEAAIRKLHHYEL 60
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+ + +++ S K S K L V N+ +N++LR F YG V E +
Sbjct: 61 KGQAINVELSKGKPRGSTK------LHVSNISSGCTNQELRAKFEEYGPVVECDIV---K 111
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349
+ F+ + A A+ L + GK IK++ S
Sbjct: 112 DYAFVHMERMDDAMEAISGLENTTFQGKLIKVQLS 146
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 109 (43.4 bits), Expect = 0.00072, P = 0.00072
Identities = 23/88 (26%), Positives = 47/88 (53%)
Query: 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEA 329
L++G L+V L + + L Q+F YG++ E+ RET R F+ F ++ A+
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 330 ALKSLNRSDIAGKRIKLEPSRPGGARRN 357
A+ ++N + G++I+++ + R+
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSENRS 90
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 97 (39.2 bits), Expect = 0.00072, P = 0.00072
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 195 LFVRNINSNV-EDSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNK 252
+F+ N+N+ V + S++ A+F +YG I C H+GF + Y + R AR A+ +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKI----VGCSVHKGFAFVQYVNERNARAAVAGEDGR 73
Query: 253 PLRRRKLDIHFSI-PKDN 269
+ + LDI+ + PK N
Sbjct: 74 MIAGQVLDINLAAEPKVN 91
>UNIPROTKB|G3V3K6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V3K6 SMR:G3V3K6 Ensembl:ENST00000556226
ArrayExpress:G3V3K6 Bgee:G3V3K6 Uniprot:G3V3K6
Length = 121
Score = 97 (39.2 bits), Expect = 0.00072, P = 0.00072
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 195 LFVRNINSNV-EDSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNK 252
+F+ N+N+ V + S++ A+F +YG I C H+GF + Y + R AR A+ +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKI----VGCSVHKGFAFVQYVNERNARAAVAGEDGR 73
Query: 253 PLRRRKLDIHFSI-PKDN 269
+ + LDI+ + PK N
Sbjct: 74 MIAGQVLDINLAAEPKVN 91
>UNIPROTKB|G3V5X6 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V5X6 SMR:G3V5X6 Ensembl:ENST00000555176
ArrayExpress:G3V5X6 Bgee:G3V5X6 Uniprot:G3V5X6
Length = 117
Score = 97 (39.2 bits), Expect = 0.00072, P = 0.00072
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 195 LFVRNINSNV-EDSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNK 252
+F+ N+N+ V + S++ A+F +YG I C H+GF + Y + R AR A+ +
Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKI----VGCSVHKGFAFVQYVNERNARAAVAGEDGR 73
Query: 253 PLRRRKLDIHFSI-PKDN 269
+ + LDI+ + PK N
Sbjct: 74 MIAGQVLDINLAAEPKVN 91
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 119 (46.9 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 43/172 (25%), Positives = 80/172 (46%)
Query: 179 GTVAGEHP-YGEHPSRTLFVRNINSNVEDSELRALFEQYG---DIRTLYTACKH----RG 230
GT+ +HP + + +FV + + +LR LFEQYG +I L ++ +G
Sbjct: 3 GTL--DHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 231 FVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV 289
+++Y +AA A AL N K L I P D+ + + L + +
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMK-PADSEKNNAVEDRKLFIGMISKKC 119
Query: 290 SNEDLRQIFGAYGEVKEIR--ETPH--KRHHKFIEFYDVRAAEAALKSLNRS 337
+ D+R +F ++G+++E R P R F+ F A+ A+K+++++
Sbjct: 120 TENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 171
Score = 47 (21.6 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 32/142 (22%), Positives = 50/142 (35%)
Query: 498 VETLSGPQFLWGXXXXXXXXXXXPAWQTSSMGHPFSS-NG-KIHGLPYSGRQGSFLGSSQ 555
+ TL GPQ+L T S HP N ++ L S S+
Sbjct: 220 LNTL-GPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAVQLQNLAALAAAASAAQSTP 278
Query: 556 HHHVGSAPSGVPLE--RRFGFLPESPETSFMNPVAFCGMG---IGQNDGSFMVNMGSRAS 610
S PL G P S +S +NP+A G G G + ++ A+
Sbjct: 279 SGTSALTTSSSPLSVLTSSGSSPSSSSSSSVNPIASLGALQTLAGATAGLNVSSLAGMAA 338
Query: 611 VNPGITVPRNLSDNGSSFRVMS 632
+N G+ + GS+ ++
Sbjct: 339 LNGGLGSSGLSNGTGSTMEALT 360
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 99 (39.9 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 278 GTLVVFNL-DPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 336
G L+V NL D V+ + L +FG YG+V+ ++ +K+ I+ D A+ A+ LN
Sbjct: 345 GVLLVSNLNDEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMSDGNQAQLAMSHLNG 404
Query: 337 SDIAGKRIKLEPSR 350
+ GK I++ S+
Sbjct: 405 QKMYGKIIRVTLSK 418
Score = 69 (29.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 27/115 (23%), Positives = 47/115 (40%)
Query: 172 YSVPNGAGTVAG--------EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-L 222
YS PN + T G E PSR + +R + + V ++E+ AL +G + L
Sbjct: 25 YSSPNSSVTANGSDSKKLRVEDSMDSPPSRVIHIRKLPNEVSETEVIALGLPFGKVTNIL 84
Query: 223 YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQ 277
K++ F+ + + +R + I +S K+ +D LNQ
Sbjct: 85 MLKGKNQAFLELGTEEAAVTMVNYYTAVTPQVRNVPVFIQYSNHKELKTDSALNQ 139
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 118 (46.6 bits), Expect = 0.00079, P = 0.00079
Identities = 40/155 (25%), Positives = 72/155 (46%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254
LF+ N++ + +ELRALFE+YG + K+ GFV + + R A++ L L
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVEC-DVVKNYGFVHMETE--QQGRDAIQNLNGYTL 65
Query: 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314
+ + + + P+ + V NL ++R++F YG V E R
Sbjct: 66 NEFAIKVEAAKSRRAPNTPTTK---IFVGNLTDKTRAPEVRELFQKYGTVVECDIV---R 119
Query: 315 HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349
++ F+ V + A+K LN + G+ +K++ S
Sbjct: 120 NYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVS 154
>UNIPROTKB|E2RIS4 [details] [associations]
symbol:E2RIS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 EMBL:AAEX03026810
ProteinModelPortal:E2RIS4 Ensembl:ENSCAFT00000029021 OMA:NEREMPP
Uniprot:E2RIS4
Length = 663
Score = 126 (49.4 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 39/123 (31%), Positives = 63/123 (51%)
Query: 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAA 242
GE Y + R LFV N+ +++ + EL+ LF +YG+ ++ K +GF +I A
Sbjct: 245 GEKTYTQR-CR-LFVGNLPADITEDELKRLFAKYGEPGEVFIN-KGKGFGLIKLESRALA 301
Query: 243 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302
A L + P+R R+L + F+ +P+ L V NL P VSNE L + F +G
Sbjct: 302 EIAKAELDDTPMRGRQLRVRFAT---HPA-------ALSVRNLSPYVSNELLEEAFSQFG 351
Query: 303 EVK 305
++
Sbjct: 352 PIE 354
Score = 43 (20.2 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 664 RRIENNNGNQLDSKKQFQLELEKIR 688
RR+E + ++ +K+ QL+ E+ R
Sbjct: 503 RRMEELHNQEMQKRKEMQLKQEEER 527
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 118 (46.6 bits), Expect = 0.00082, P = 0.00082
Identities = 46/181 (25%), Positives = 74/181 (40%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI------R 220
NG S+PNG V + + L V + N+ E ++LF G+I R
Sbjct: 14 NGPSGTSLPNGP--VISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVR 71
Query: 221 TLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTL 280
T + G+ ++Y D A A+ L L+ + + + ++ PS + L
Sbjct: 72 DKITG-QSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANL 126
Query: 281 VVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK------RHHKFIEFYDVRAAEAALKSL 334
V L ++S +D+ Q+F YG + R + R FI F AE A+K L
Sbjct: 127 YVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGL 186
Query: 335 N 335
N
Sbjct: 187 N 187
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 121 (47.7 bits), Expect = 0.00082, P = 0.00082
Identities = 47/178 (26%), Positives = 78/178 (43%)
Query: 176 NG-AGTVAGEHPYGEHPSRT---LFVRNINSNVEDSELRALFEQYG---DIRTLYTACKH 228
NG AG + G + + P +FV I + + EL+ LFE YG I L ++
Sbjct: 94 NGTAGKMNGALEHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQN 153
Query: 229 ----RGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVF 283
+G +++Y +AA A AL N K L I P D+ + L +
Sbjct: 154 PPQSKGCCFVTFYTRKAALEAQNALHNIKTLTGMHHPIQMK-PADSEKSNAVEDRKLFIG 212
Query: 284 NLDPSVSNEDLRQIFGAYGEVKEIR--ETPH--KRHHKFIEFYDVRAAEAALKSLNRS 337
+ + D+R +F YG+++E R P R F+ F A+ A+K++++S
Sbjct: 213 MVSKKCNENDIRVMFSPYGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQS 270
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 87 (35.7 bits), Expect = 0.00083, Sum P(3) = 0.00082
Identities = 18/78 (23%), Positives = 41/78 (52%)
Query: 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTACKH----RGFVMISYYDIRAARTAMRALQ 250
L +RN++ + +L+ +F Q+G I + K RGF + + ++ A A++ +
Sbjct: 116 LIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMN 175
Query: 251 NKPLRRRKLDIHFSIPKD 268
K ++ R + + +++ KD
Sbjct: 176 MKEIKGRTVAVDWAVAKD 193
Score = 80 (33.2 bits), Expect = 0.00083, Sum P(3) = 0.00082
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 274 DLNQG-TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAA 330
D+N+G T+ + NL EDL ++ +G++K +R P H K F EAA
Sbjct: 327 DVNEGKTVFIRNLSFDSEEEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAA 386
Query: 331 LKSLNRS--DIAGKRIKLE 347
K L + + G +KL+
Sbjct: 387 QKCLEAASPEAEGGGLKLD 405
Score = 48 (22.0 bits), Expect = 0.00083, Sum P(3) = 0.00082
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 655 EGLYERGRSRRIENNNGNQLDSKKQFQL-ELEKIRSGED--TRTTLMIKNIPNKYTSKML 711
EGL G ++ E + + +++F+L + +K++ +RT L + N+P K L
Sbjct: 442 EGLIRAG-TKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQL 500
Query: 712 LAAIDENHKG 721
+ + +G
Sbjct: 501 RKLLLNSTRG 510
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 118 (46.6 bits), Expect = 0.00085, P = 0.00085
Identities = 46/175 (26%), Positives = 75/175 (42%)
Query: 173 SVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDI------RTLYTAC 226
++PNG + G + + L V + N+ E ++LF GDI R T
Sbjct: 21 ALPNGP--LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG- 77
Query: 227 KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLD 286
+ G+ ++Y D A A+ L L+ + + + ++ PS + L V L
Sbjct: 78 QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA----RPSSASIRDANLYVSGLP 133
Query: 287 PSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRA-AEAALKSLN 335
++S +++ Q+F YG + R T R FI F D R AE A+K LN
Sbjct: 134 KTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRF-DKRIEAEEAIKGLN 187
>MGI|MGI:1860489 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=ISO] [GO:2000177 "regulation
of neural precursor cell proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1860489 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
GO:GO:2000177 KO:K14948 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG ChiTaRS:PTBP2
EMBL:AF095718 EMBL:AK013734 EMBL:AK137348 EMBL:BC010255
EMBL:AY333752 EMBL:BK000527 IPI:IPI00136002 IPI:IPI00751759
RefSeq:NP_062423.1 UniGene:Mm.29966 ProteinModelPortal:Q91Z31
SMR:Q91Z31 IntAct:Q91Z31 STRING:Q91Z31 PhosphoSite:Q91Z31
PaxDb:Q91Z31 PRIDE:Q91Z31 Ensembl:ENSMUST00000029780 GeneID:56195
KEGG:mmu:56195 UCSC:uc008rdi.1 UCSC:uc008rdk.2 InParanoid:Q91Z31
OMA:QSQLAMS NextBio:312010 Bgee:Q91Z31 CleanEx:MM_PTBP2
Genevestigator:Q91Z31 GermOnline:ENSMUSG00000028134 Uniprot:Q91Z31
Length = 531
Score = 86 (35.3 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 280 LVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338
L+V NL+ V+ + L +FG YG+V+ ++ +K+ I+ D ++ A+ LN
Sbjct: 340 LLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQK 399
Query: 339 IAGKRIKLEPSR 350
+ GK I++ S+
Sbjct: 400 MYGKIIRVTLSK 411
Score = 82 (33.9 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 167 NGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LYTA 225
+G++ + N + GE PSR L +R + V ++E+ AL +G + L
Sbjct: 33 SGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK 92
Query: 226 CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVV 282
K++ F+ ++ + + LR + + I +S K+ +D LNQ VV
Sbjct: 93 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVV 149
WARNING: HSPs involving 10 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 823 754 0.00090 121 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 260
No. of states in DFA: 616 (65 KB)
Total size of DFA: 374 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.97u 0.12s 68.09t Elapsed: 00:00:03
Total cpu time: 68.01u 0.12s 68.13t Elapsed: 00:00:03
Start: Tue May 21 03:53:11 2013 End: Tue May 21 03:53:14 2013
WARNINGS ISSUED: 2