Query 003400
Match_columns 823
No_of_seqs 686 out of 3326
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 22:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003400.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003400hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 1.4E-74 3.1E-79 637.3 25.3 495 130-808 2-501 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 2.2E-46 4.8E-51 337.6 10.5 97 694-790 1-97 (97)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-31 4.2E-36 295.3 24.2 241 114-354 3-351 (352)
4 KOG0117 Heterogeneous nuclear 100.0 1.2E-29 2.7E-34 273.8 26.7 244 106-356 75-335 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 3.4E-30 7.3E-35 303.3 24.3 292 18-357 39-369 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1E-29 2.2E-34 299.3 24.0 265 116-380 2-311 (562)
7 KOG0145 RNA-binding protein EL 100.0 1.1E-29 2.4E-34 257.6 14.3 213 189-427 38-268 (360)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3E-27 6.5E-32 261.9 32.5 159 191-353 2-172 (352)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.6E-28 3.4E-33 284.3 22.5 235 111-354 55-309 (578)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-27 2.4E-32 276.8 22.3 262 115-380 3-420 (481)
11 KOG0148 Apoptosis-promoting RN 100.0 4.9E-27 1.1E-31 240.2 20.5 215 114-355 6-241 (321)
12 KOG0145 RNA-binding protein EL 99.9 9.3E-28 2E-32 243.6 12.8 246 90-352 37-358 (360)
13 TIGR01659 sex-lethal sex-letha 99.9 1.1E-26 2.3E-31 256.6 20.3 163 188-354 103-277 (346)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 8.1E-26 1.7E-30 261.3 23.1 163 190-352 273-480 (481)
15 KOG0110 RNA-binding protein (R 99.9 3.3E-27 7.1E-32 267.5 10.4 326 21-379 246-638 (725)
16 TIGR01622 SF-CC1 splicing fact 99.9 6E-25 1.3E-29 252.2 24.1 238 114-351 89-447 (457)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.2E-24 2.6E-29 253.0 22.4 237 113-351 174-501 (509)
18 TIGR01645 half-pint poly-U bin 99.9 2.1E-24 4.5E-29 250.5 19.9 163 191-353 106-285 (612)
19 KOG0144 RNA-binding protein CU 99.9 1.7E-23 3.8E-28 225.4 23.2 164 190-356 32-210 (510)
20 KOG0127 Nucleolar protein fibr 99.9 3.7E-23 8.1E-28 227.8 17.1 242 115-356 6-382 (678)
21 TIGR01622 SF-CC1 splicing fact 99.9 8.2E-23 1.8E-27 234.6 19.6 163 188-351 85-265 (457)
22 KOG0144 RNA-binding protein CU 99.9 1.5E-23 3.2E-28 225.9 12.1 241 114-354 34-506 (510)
23 TIGR01648 hnRNP-R-Q heterogene 99.9 3.6E-22 7.7E-27 231.6 18.6 178 191-378 57-257 (578)
24 TIGR01645 half-pint poly-U bin 99.9 2.8E-21 6E-26 224.6 23.2 154 112-265 105-282 (612)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-21 2.8E-26 227.6 19.2 164 187-352 170-375 (509)
26 KOG0117 Heterogeneous nuclear 99.9 3E-21 6.5E-26 209.2 15.9 180 191-380 82-285 (506)
27 KOG0123 Polyadenylate-binding 99.9 1.5E-20 3.2E-25 209.1 19.1 229 116-355 3-249 (369)
28 KOG0131 Splicing factor 3b, su 99.8 5E-21 1.1E-25 186.8 11.6 162 191-355 8-180 (203)
29 KOG0109 RNA-binding protein LA 99.8 7E-21 1.5E-25 196.9 9.9 148 193-352 3-150 (346)
30 KOG0123 Polyadenylate-binding 99.8 2.5E-20 5.3E-25 207.4 13.2 276 24-356 40-353 (369)
31 KOG0127 Nucleolar protein fibr 99.8 8.9E-20 1.9E-24 201.4 15.3 161 193-353 6-197 (678)
32 KOG0110 RNA-binding protein (R 99.8 1.8E-19 4E-24 205.0 14.1 161 194-354 517-695 (725)
33 KOG0148 Apoptosis-promoting RN 99.8 3E-18 6.4E-23 176.1 11.7 161 189-379 3-189 (321)
34 KOG0124 Polypyrimidine tract-b 99.7 6E-18 1.3E-22 179.0 10.8 156 192-349 113-287 (544)
35 TIGR01659 sex-lethal sex-letha 99.7 1.3E-17 2.9E-22 184.6 14.0 153 114-266 107-274 (346)
36 KOG4206 Spliceosomal protein s 99.7 5.7E-17 1.2E-21 164.3 15.8 162 189-350 6-220 (221)
37 KOG0146 RNA-binding protein ET 99.7 6.7E-18 1.5E-22 172.7 8.1 166 191-356 18-369 (371)
38 KOG0147 Transcriptional coacti 99.7 1.1E-16 2.3E-21 178.6 14.1 237 114-350 179-526 (549)
39 KOG4212 RNA-binding protein hn 99.7 4.7E-14 1E-18 152.8 30.0 159 192-350 44-292 (608)
40 KOG0124 Polypyrimidine tract-b 99.7 9.6E-16 2.1E-20 162.5 13.9 239 111-349 110-532 (544)
41 KOG1190 Polypyrimidine tract-b 99.6 3.8E-15 8.2E-20 160.5 16.7 239 115-353 29-374 (492)
42 KOG0105 Alternative splicing f 99.6 2.1E-15 4.6E-20 147.5 12.4 149 190-340 4-176 (241)
43 KOG0147 Transcriptional coacti 99.6 2.8E-16 6.2E-21 175.2 5.7 163 187-350 174-356 (549)
44 KOG4205 RNA-binding protein mu 99.6 2.4E-15 5.1E-20 162.8 9.8 161 191-353 5-177 (311)
45 KOG1190 Polypyrimidine tract-b 99.5 8.4E-13 1.8E-17 142.6 17.8 161 192-352 297-491 (492)
46 KOG0109 RNA-binding protein LA 99.5 5.7E-14 1.2E-18 146.1 7.4 145 114-268 2-151 (346)
47 KOG1457 RNA binding protein (c 99.5 3.6E-13 7.9E-18 135.5 11.7 150 191-340 33-274 (284)
48 KOG0106 Alternative splicing f 99.4 8.4E-14 1.8E-18 142.6 6.4 150 193-348 2-167 (216)
49 PLN03134 glycine-rich RNA-bind 99.4 7.3E-13 1.6E-17 129.6 10.3 78 276-353 33-115 (144)
50 PLN03134 glycine-rich RNA-bind 99.4 9.4E-13 2E-17 128.8 10.9 81 189-269 31-116 (144)
51 KOG1456 Heterogeneous nuclear 99.4 2.2E-11 4.8E-16 130.3 17.6 232 115-352 32-363 (494)
52 KOG1548 Transcription elongati 99.4 1.3E-11 2.7E-16 131.6 15.7 163 190-352 132-352 (382)
53 KOG4212 RNA-binding protein hn 99.3 5.1E-11 1.1E-15 129.6 17.2 70 278-349 537-608 (608)
54 PF00076 RRM_1: RNA recognitio 99.3 1.1E-11 2.3E-16 104.4 8.1 66 280-345 1-70 (70)
55 KOG0107 Alternative splicing f 99.3 7.1E-12 1.5E-16 122.5 6.9 77 277-353 10-86 (195)
56 PF00076 RRM_1: RNA recognitio 99.2 1.2E-11 2.6E-16 104.2 6.8 66 195-260 1-70 (70)
57 KOG0107 Alternative splicing f 99.2 1.1E-11 2.3E-16 121.3 6.0 77 191-267 9-85 (195)
58 KOG0120 Splicing factor U2AF, 99.2 1.3E-10 2.9E-15 131.9 14.9 162 190-351 287-491 (500)
59 KOG4205 RNA-binding protein mu 99.2 6E-11 1.3E-15 128.8 10.2 157 114-271 6-180 (311)
60 COG0724 RNA-binding proteins ( 99.2 1.4E-10 3.1E-15 120.5 12.0 119 192-310 115-258 (306)
61 KOG0131 Splicing factor 3b, su 99.2 3.5E-11 7.6E-16 118.4 6.3 155 115-269 10-179 (203)
62 KOG4211 Splicing factor hnRNP- 99.2 2.4E-10 5.3E-15 126.9 13.6 157 192-351 10-181 (510)
63 KOG0125 Ataxin 2-binding prote 99.2 7.9E-11 1.7E-15 124.8 9.0 99 250-352 73-174 (376)
64 KOG0122 Translation initiation 99.1 1.2E-10 2.6E-15 119.3 8.7 77 276-352 188-269 (270)
65 KOG4660 Protein Mei2, essentia 99.1 5.5E-11 1.2E-15 133.7 6.8 163 188-353 71-251 (549)
66 KOG0122 Translation initiation 99.1 1.6E-10 3.4E-15 118.5 9.1 78 190-267 187-269 (270)
67 KOG1456 Heterogeneous nuclear 99.1 8E-10 1.7E-14 118.6 14.8 171 183-354 22-201 (494)
68 KOG0121 Nuclear cap-binding pr 99.1 7.7E-11 1.7E-15 109.8 6.2 76 189-264 33-113 (153)
69 KOG0114 Predicted RNA-binding 99.1 1.9E-10 4.1E-15 103.6 8.4 78 190-267 16-95 (124)
70 PLN03120 nucleic acid binding 99.1 2E-10 4.3E-15 120.9 9.7 74 277-351 4-79 (260)
71 KOG0114 Predicted RNA-binding 99.1 2.4E-10 5.3E-15 102.9 8.8 81 277-357 18-100 (124)
72 KOG0121 Nuclear cap-binding pr 99.1 1.2E-10 2.5E-15 108.6 6.1 76 276-351 35-115 (153)
73 PLN03120 nucleic acid binding 99.1 3.1E-10 6.7E-15 119.5 9.4 76 192-268 4-81 (260)
74 smart00362 RRM_2 RNA recogniti 99.1 5.3E-10 1.1E-14 92.9 8.5 69 279-347 1-72 (72)
75 PF14259 RRM_6: RNA recognitio 99.1 4.3E-10 9.3E-15 95.5 7.6 66 280-345 1-70 (70)
76 KOG0125 Ataxin 2-binding prote 99.1 3.9E-10 8.5E-15 119.6 8.6 79 189-267 93-174 (376)
77 PF14259 RRM_6: RNA recognitio 99.0 4.5E-10 9.8E-15 95.4 7.0 66 195-260 1-70 (70)
78 PF13893 RRM_5: RNA recognitio 99.0 8.1E-10 1.8E-14 90.1 7.9 56 294-349 1-56 (56)
79 KOG1365 RNA-binding protein Fu 99.0 1.9E-09 4.1E-14 116.1 11.2 160 192-352 161-362 (508)
80 smart00362 RRM_2 RNA recogniti 99.0 1.3E-09 2.7E-14 90.6 7.9 69 194-262 1-72 (72)
81 PLN03213 repressor of silencin 99.0 7.7E-10 1.7E-14 121.9 8.3 77 276-352 9-88 (759)
82 KOG0113 U1 small nuclear ribon 99.0 1.6E-09 3.6E-14 113.7 9.8 92 263-354 87-183 (335)
83 KOG0105 Alternative splicing f 99.0 6.5E-10 1.4E-14 109.5 6.1 78 276-353 5-84 (241)
84 KOG4207 Predicted splicing fac 99.0 7.5E-10 1.6E-14 110.8 6.4 80 187-266 8-92 (256)
85 KOG0149 Predicted RNA-binding 99.0 9.6E-10 2.1E-14 112.4 7.3 77 188-265 8-89 (247)
86 KOG4207 Predicted splicing fac 98.9 7.3E-10 1.6E-14 110.9 5.4 76 277-352 13-93 (256)
87 KOG4211 Splicing factor hnRNP- 98.9 9E-09 1.9E-13 114.6 13.2 229 115-345 11-351 (510)
88 cd00590 RRM RRM (RNA recogniti 98.9 5.5E-09 1.2E-13 87.2 8.9 70 279-348 1-74 (74)
89 PLN03121 nucleic acid binding 98.9 3.9E-09 8.5E-14 109.6 9.3 73 277-350 5-79 (243)
90 PLN03213 repressor of silencin 98.9 2.9E-09 6.3E-14 117.5 8.5 78 190-267 8-88 (759)
91 smart00360 RRM RNA recognition 98.9 4.5E-09 9.8E-14 86.8 7.6 66 282-347 1-71 (71)
92 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.4E-14 110.4 4.2 80 276-355 9-93 (298)
93 KOG0113 U1 small nuclear ribon 98.9 4.3E-09 9.2E-14 110.7 8.3 78 188-265 97-179 (335)
94 PF13893 RRM_5: RNA recognitio 98.9 3.4E-09 7.3E-14 86.5 5.9 56 209-264 1-56 (56)
95 cd00590 RRM RRM (RNA recogniti 98.9 7.4E-09 1.6E-13 86.4 7.9 70 194-263 1-74 (74)
96 PLN03121 nucleic acid binding 98.9 6E-09 1.3E-13 108.3 8.6 73 192-265 5-79 (243)
97 KOG0149 Predicted RNA-binding 98.8 3.5E-09 7.5E-14 108.4 6.3 77 276-353 11-92 (247)
98 smart00360 RRM RNA recognition 98.8 7E-09 1.5E-13 85.6 6.9 66 197-262 1-71 (71)
99 KOG0130 RNA-binding protein RB 98.8 5E-09 1.1E-13 98.6 6.2 80 274-353 69-153 (170)
100 KOG0111 Cyclophilin-type pepti 98.8 2.1E-09 4.6E-14 108.3 3.9 81 190-270 8-93 (298)
101 COG0724 RNA-binding proteins ( 98.8 1.3E-08 2.9E-13 105.7 9.2 75 277-351 115-194 (306)
102 KOG0129 Predicted RNA-binding 98.8 5.2E-08 1.1E-12 109.3 12.9 157 189-349 256-451 (520)
103 KOG0112 Large RNA-binding prot 98.7 5.2E-09 1.1E-13 123.0 4.3 159 189-354 369-533 (975)
104 KOG0108 mRNA cleavage and poly 98.7 1.8E-08 3.8E-13 114.2 8.0 79 278-356 19-102 (435)
105 KOG0146 RNA-binding protein ET 98.7 2.5E-08 5.4E-13 103.2 6.9 97 256-356 2-105 (371)
106 KOG0108 mRNA cleavage and poly 98.7 2.2E-08 4.8E-13 113.4 6.8 76 193-268 19-99 (435)
107 KOG0126 Predicted RNA-binding 98.7 2.9E-09 6.4E-14 104.8 -0.3 76 275-350 33-113 (219)
108 KOG4206 Spliceosomal protein s 98.7 3.3E-08 7.1E-13 101.1 7.2 76 278-353 10-91 (221)
109 smart00361 RRM_1 RNA recogniti 98.6 6.7E-08 1.5E-12 82.8 7.1 56 291-346 2-69 (70)
110 KOG0130 RNA-binding protein RB 98.6 3.8E-08 8.3E-13 92.7 5.5 78 190-267 70-152 (170)
111 KOG0126 Predicted RNA-binding 98.6 4.1E-09 8.9E-14 103.8 -1.1 76 190-265 33-113 (219)
112 KOG0120 Splicing factor U2AF, 98.6 7.6E-08 1.7E-12 109.8 8.6 165 189-355 172-372 (500)
113 KOG0132 RNA polymerase II C-te 98.6 6.1E-08 1.3E-12 112.5 7.2 77 192-269 421-497 (894)
114 KOG0132 RNA polymerase II C-te 98.5 1.7E-07 3.6E-12 109.0 8.3 80 276-356 420-499 (894)
115 smart00361 RRM_1 RNA recogniti 98.5 2.9E-07 6.2E-12 78.9 6.0 56 206-261 2-69 (70)
116 KOG0153 Predicted RNA-binding 98.4 3.1E-07 6.7E-12 98.7 7.0 83 183-266 219-302 (377)
117 KOG4454 RNA binding protein (R 98.4 2.4E-07 5.1E-12 94.0 4.9 143 190-346 7-157 (267)
118 KOG0128 RNA-binding protein SA 98.4 7.1E-08 1.5E-12 113.3 0.4 140 192-352 667-815 (881)
119 KOG0153 Predicted RNA-binding 98.4 6.9E-07 1.5E-11 96.1 7.6 78 273-351 224-302 (377)
120 KOG0415 Predicted peptidyl pro 98.3 6.3E-07 1.4E-11 96.2 5.6 77 276-352 238-319 (479)
121 KOG4210 Nuclear localization s 98.3 1.2E-06 2.6E-11 95.0 6.5 164 190-354 86-266 (285)
122 KOG0226 RNA-binding proteins [ 98.2 1E-06 2.3E-11 91.2 4.3 129 225-353 136-271 (290)
123 KOG0415 Predicted peptidyl pro 98.2 1.5E-06 3.2E-11 93.4 5.1 78 189-266 236-318 (479)
124 KOG0106 Alternative splicing f 98.2 2.2E-06 4.7E-11 88.5 6.0 148 114-264 1-168 (216)
125 KOG1548 Transcription elongati 98.2 1.5E-05 3.4E-10 85.8 11.9 153 111-264 131-349 (382)
126 KOG4208 Nucleolar RNA-binding 98.2 5.2E-06 1.1E-10 84.0 7.8 78 275-352 47-130 (214)
127 KOG4208 Nucleolar RNA-binding 98.1 7E-06 1.5E-10 83.1 7.5 79 188-266 45-129 (214)
128 KOG1457 RNA binding protein (c 98.0 1.5E-05 3.3E-10 81.3 8.1 79 277-355 34-121 (284)
129 KOG0129 Predicted RNA-binding 98.0 4.6E-05 1E-09 86.2 12.2 150 98-248 244-432 (520)
130 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.1E-05 2.3E-10 91.0 6.9 75 278-352 406-485 (940)
131 KOG2193 IGF-II mRNA-binding pr 98.0 6.5E-07 1.4E-11 97.9 -2.7 149 193-350 2-155 (584)
132 KOG4661 Hsp27-ERE-TATA-binding 97.9 2E-05 4.2E-10 89.0 7.9 76 190-265 403-483 (940)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 97.9 8.6E-06 1.9E-10 82.5 3.9 90 692-781 5-99 (176)
134 KOG0112 Large RNA-binding prot 97.9 3.1E-05 6.6E-10 92.1 8.1 152 114-267 372-531 (975)
135 KOG0533 RRM motif-containing p 97.9 3.1E-05 6.7E-10 81.7 7.4 77 190-266 81-161 (243)
136 KOG0533 RRM motif-containing p 97.8 4.4E-05 9.6E-10 80.5 8.3 78 276-353 82-163 (243)
137 KOG0151 Predicted splicing reg 97.8 3.9E-05 8.5E-10 89.0 8.0 81 186-266 168-256 (877)
138 KOG0151 Predicted splicing reg 97.8 2.7E-05 5.9E-10 90.2 6.1 78 274-351 171-256 (877)
139 KOG0116 RasGAP SH3 binding pro 97.7 3.7E-05 8E-10 87.1 5.4 73 192-265 288-365 (419)
140 KOG1365 RNA-binding protein Fu 97.7 0.00039 8.5E-09 75.9 12.3 143 190-333 58-225 (508)
141 PF11608 Limkain-b1: Limkain b 97.7 0.00016 3.4E-09 63.7 7.5 68 193-265 3-75 (90)
142 PF04059 RRM_2: RNA recognitio 97.7 0.00015 3.3E-09 66.2 7.7 73 193-265 2-85 (97)
143 PF11608 Limkain-b1: Limkain b 97.6 0.0002 4.3E-09 63.1 7.7 70 278-352 3-77 (90)
144 KOG0116 RasGAP SH3 binding pro 97.6 8.2E-05 1.8E-09 84.3 6.7 75 278-353 289-368 (419)
145 KOG4209 Splicing factor RNPS1, 97.6 9.4E-05 2E-09 78.0 5.6 79 273-352 97-180 (231)
146 KOG4676 Splicing factor, argin 97.5 3.7E-05 8.1E-10 83.9 1.6 157 193-351 8-225 (479)
147 KOG4307 RNA binding protein RB 97.4 0.00026 5.7E-09 82.0 6.5 161 191-352 310-514 (944)
148 KOG4454 RNA binding protein (R 97.2 0.00018 3.8E-09 73.6 2.9 75 276-351 8-86 (267)
149 KOG4209 Splicing factor RNPS1, 97.2 0.00038 8.1E-09 73.5 4.9 77 188-265 97-178 (231)
150 KOG0226 RNA-binding proteins [ 97.2 0.00055 1.2E-08 71.5 5.7 75 190-264 188-267 (290)
151 PF08777 RRM_3: RNA binding mo 97.1 0.00089 1.9E-08 62.3 6.3 71 279-350 3-78 (105)
152 KOG4210 Nuclear localization s 97.0 0.00077 1.7E-08 73.4 5.4 170 95-268 72-265 (285)
153 COG5175 MOT2 Transcriptional r 96.8 0.0038 8.3E-08 67.4 8.0 76 277-352 114-203 (480)
154 KOG0128 RNA-binding protein SA 96.8 0.00049 1.1E-08 81.9 1.5 141 114-266 667-814 (881)
155 KOG2193 IGF-II mRNA-binding pr 96.4 0.0028 6.2E-08 70.1 4.2 101 278-381 2-107 (584)
156 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0078 1.7E-07 48.9 5.6 53 192-246 1-53 (53)
157 COG5175 MOT2 Transcriptional r 96.4 0.0048 1E-07 66.6 5.4 75 191-265 113-201 (480)
158 KOG1855 Predicted RNA-binding 96.2 0.006 1.3E-07 68.0 5.5 66 272-337 226-309 (484)
159 KOG0115 RNA-binding protein p5 96.2 0.0071 1.5E-07 63.5 5.6 86 240-336 5-94 (275)
160 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.0087 1.9E-07 48.7 5.0 52 278-331 2-53 (53)
161 PF08777 RRM_3: RNA binding mo 96.2 0.012 2.6E-07 54.8 6.5 59 193-252 2-60 (105)
162 KOG1995 Conserved Zn-finger pr 96.1 0.0048 1E-07 67.6 4.1 78 276-353 65-155 (351)
163 KOG3152 TBP-binding protein, a 95.9 0.0047 1E-07 64.8 2.8 68 191-258 73-157 (278)
164 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.019 4E-07 53.0 6.3 72 277-350 6-90 (100)
165 KOG1855 Predicted RNA-binding 95.9 0.0077 1.7E-07 67.2 4.5 75 188-262 227-319 (484)
166 KOG1295 Nonsense-mediated deca 95.8 0.0046 9.9E-08 68.4 2.3 73 692-765 5-79 (376)
167 KOG1995 Conserved Zn-finger pr 95.7 0.011 2.4E-07 64.8 4.4 77 189-265 63-152 (351)
168 KOG2314 Translation initiation 95.5 0.025 5.4E-07 65.1 6.6 73 276-348 57-140 (698)
169 KOG3152 TBP-binding protein, a 95.5 0.0072 1.6E-07 63.4 2.1 68 276-343 73-157 (278)
170 KOG4307 RNA binding protein RB 95.4 0.034 7.4E-07 65.2 7.2 70 279-348 869-943 (944)
171 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.051 1.1E-06 50.1 5.5 72 191-264 5-89 (100)
172 PF07576 BRAP2: BRCA1-associat 94.8 0.18 3.9E-06 47.4 9.0 85 693-780 11-96 (110)
173 PF08952 DUF1866: Domain of un 94.8 0.084 1.8E-06 51.7 6.9 75 275-353 25-108 (146)
174 KOG2202 U2 snRNP splicing fact 94.7 0.015 3.2E-07 61.3 1.8 61 292-352 83-148 (260)
175 KOG0804 Cytoplasmic Zn-finger 94.3 0.14 3E-06 57.9 8.3 81 694-778 74-154 (493)
176 KOG1996 mRNA splicing factor [ 94.3 0.08 1.7E-06 56.7 6.0 61 291-351 300-366 (378)
177 KOG2314 Translation initiation 94.2 0.083 1.8E-06 60.9 6.4 70 192-261 58-138 (698)
178 KOG2202 U2 snRNP splicing fact 93.7 0.031 6.7E-07 59.0 1.5 58 207-264 83-145 (260)
179 PF15023 DUF4523: Protein of u 92.8 0.31 6.8E-06 47.4 6.8 75 187-264 81-159 (166)
180 KOG4849 mRNA cleavage factor I 92.0 0.14 3.1E-06 55.9 3.7 70 192-261 80-156 (498)
181 PF15023 DUF4523: Protein of u 91.8 0.6 1.3E-05 45.5 7.3 75 274-351 83-161 (166)
182 KOG2416 Acinus (induces apopto 91.7 0.12 2.5E-06 60.1 2.8 67 187-254 439-506 (718)
183 KOG1996 mRNA splicing factor [ 91.5 0.31 6.8E-06 52.3 5.6 75 191-265 280-365 (378)
184 KOG2135 Proteins containing th 91.5 0.25 5.3E-06 56.2 5.0 73 279-353 374-447 (526)
185 PF08675 RNA_bind: RNA binding 91.1 0.75 1.6E-05 41.0 6.6 54 278-335 10-63 (87)
186 KOG2591 c-Mpl binding protein, 91.0 0.35 7.6E-06 55.9 5.7 78 183-262 166-247 (684)
187 PF08675 RNA_bind: RNA binding 90.9 0.98 2.1E-05 40.3 7.2 55 193-251 10-64 (87)
188 KOG2591 c-Mpl binding protein, 90.6 0.52 1.1E-05 54.6 6.6 70 276-347 174-247 (684)
189 PF04847 Calcipressin: Calcipr 89.3 0.66 1.4E-05 47.6 5.6 63 290-353 8-72 (184)
190 PF10309 DUF2414: Protein of u 89.1 1.5 3.3E-05 37.0 6.6 53 278-334 6-62 (62)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 89.1 0.41 8.8E-06 48.7 3.9 77 190-266 5-97 (176)
192 KOG4849 mRNA cleavage factor I 89.0 0.38 8.2E-06 52.7 3.7 73 277-349 80-159 (498)
193 KOG2416 Acinus (induces apopto 88.8 0.31 6.8E-06 56.7 3.1 77 276-353 443-523 (718)
194 PF08952 DUF1866: Domain of un 88.7 0.75 1.6E-05 45.2 5.2 72 191-266 26-106 (146)
195 KOG4676 Splicing factor, argin 88.3 0.46 1E-05 52.9 3.9 71 278-349 8-86 (479)
196 PF10309 DUF2414: Protein of u 88.0 2.2 4.8E-05 36.0 6.8 53 193-249 6-62 (62)
197 KOG4285 Mitotic phosphoprotein 86.1 2.5 5.5E-05 45.8 7.8 73 277-352 197-270 (350)
198 KOG2068 MOT2 transcription fac 83.6 0.66 1.4E-05 51.0 2.2 77 277-353 77-164 (327)
199 KOG2068 MOT2 transcription fac 82.4 0.79 1.7E-05 50.4 2.2 75 192-266 77-162 (327)
200 PF04847 Calcipressin: Calcipr 78.1 2.4 5.1E-05 43.5 3.9 61 205-266 8-70 (184)
201 KOG2135 Proteins containing th 78.0 1.2 2.6E-05 50.8 1.9 79 188-268 368-447 (526)
202 KOG4574 RNA-binding protein (c 77.3 1.6 3.5E-05 53.0 2.7 73 279-352 300-374 (1007)
203 KOG4285 Mitotic phosphoprotein 77.2 3.3 7.1E-05 45.0 4.7 63 192-257 197-259 (350)
204 KOG0115 RNA-binding protein p5 76.8 2.4 5.2E-05 45.1 3.5 59 193-251 32-94 (275)
205 PF14111 DUF4283: Domain of un 75.1 3.8 8.3E-05 39.8 4.3 103 204-310 29-138 (153)
206 PF03880 DbpA: DbpA RNA bindin 72.1 13 0.00028 32.2 6.4 58 288-349 12-74 (74)
207 PF07576 BRAP2: BRCA1-associat 71.2 26 0.00057 33.0 8.6 66 191-256 12-81 (110)
208 PF11767 SET_assoc: Histone ly 70.2 10 0.00023 32.4 5.2 55 203-261 11-65 (66)
209 KOG2253 U1 snRNP complex, subu 69.1 3.5 7.5E-05 49.1 2.8 69 276-348 39-107 (668)
210 KOG4574 RNA-binding protein (c 67.6 2.8 6E-05 51.1 1.7 73 194-267 300-374 (1007)
211 PF07292 NID: Nmi/IFP 35 domai 66.6 4.3 9.4E-05 36.7 2.3 67 232-299 1-74 (88)
212 KOG2253 U1 snRNP complex, subu 62.0 5.5 0.00012 47.5 2.7 70 190-263 38-107 (668)
213 KOG4019 Calcineurin-mediated s 61.1 12 0.00027 38.0 4.6 74 279-353 12-91 (193)
214 PF10567 Nab6_mRNP_bdg: RNA-re 59.9 88 0.0019 34.4 10.9 145 190-335 13-212 (309)
215 PF11767 SET_assoc: Histone ly 59.8 25 0.00053 30.2 5.5 55 288-346 11-65 (66)
216 PF03880 DbpA: DbpA RNA bindin 52.5 39 0.00084 29.2 5.8 59 202-264 11-74 (74)
217 KOG0804 Cytoplasmic Zn-finger 47.7 38 0.00082 39.1 6.1 65 277-341 74-142 (493)
218 KOG2318 Uncharacterized conser 41.8 74 0.0016 37.9 7.4 78 186-263 168-304 (650)
219 KOG4410 5-formyltetrahydrofola 34.1 58 0.0013 35.4 4.7 48 192-240 330-378 (396)
220 KOG2318 Uncharacterized conser 29.3 1.6E+02 0.0034 35.3 7.4 74 276-349 173-305 (650)
221 KOG4483 Uncharacterized conser 28.5 1.2E+02 0.0025 34.7 6.0 55 277-333 391-446 (528)
222 PRK14548 50S ribosomal protein 26.5 1.2E+02 0.0026 27.3 4.6 56 279-334 22-81 (84)
223 KOG4410 5-formyltetrahydrofola 24.3 1.7E+02 0.0037 32.0 6.1 47 278-325 331-378 (396)
224 TIGR03636 L23_arch archaeal ri 24.2 1.5E+02 0.0032 26.3 4.7 56 279-334 15-74 (77)
225 PRK14548 50S ribosomal protein 24.2 1.4E+02 0.0031 26.8 4.7 54 195-248 23-80 (84)
226 KOG2891 Surface glycoprotein [ 23.7 31 0.00067 37.2 0.5 98 279-376 151-292 (445)
227 COG5594 Uncharacterized integr 23.4 1.7E+02 0.0037 36.6 6.6 32 189-220 205-237 (827)
228 PF15513 DUF4651: Domain of un 21.7 1.3E+02 0.0029 25.5 3.7 18 207-224 9-26 (62)
229 PF07292 NID: Nmi/IFP 35 domai 20.4 56 0.0012 29.7 1.4 26 189-214 49-74 (88)
230 PF03468 XS: XS domain; Inter 20.4 1E+02 0.0022 29.3 3.2 47 194-240 10-67 (116)
231 TIGR03636 L23_arch archaeal ri 20.1 2E+02 0.0044 25.4 4.8 54 195-248 16-73 (77)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-74 Score=637.33 Aligned_cols=495 Identities=53% Similarity=0.807 Sum_probs=374.6
Q ss_pred HHHHhhcCCCcEEEeccCccCcccceeEeeecCccccccccccccCCCCccccCCCCCCCCCCcEEEEcCCCCCCCHHHH
Q 003400 130 EDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSEL 209 (823)
Q Consensus 130 el~dlFs~~G~v~V~~d~~es~~~g~~~v~~~e~~~a~~~~~~~l~n~~~~~~~~~~~~e~~srtLfV~NLP~~vteeeL 209 (823)
+++++|...|++++..+....... + -...+..+.+..++|..+ +++ +| .+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~---~--------------~~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV---R--------------NSDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh---c--------------ccccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 457889999999776664433221 1 122255667788888877 666 77 788
Q ss_pred HHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeecCCCCC
Q 003400 210 RALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV 289 (823)
Q Consensus 210 r~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v 289 (823)
..+|+.| ++++. .+.+.+++.++++|+|.|||.++
T Consensus 53 ~a~f~~~---------------------------------------~~p~~------~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPF---------------------------------------NKPLR------PDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred Hhhhhcc---------------------------------------CCCCC------cCCCCcccCccceEEEEecCCcC
Confidence 8899888 11111 15566677889999999999999
Q ss_pred CHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccchhhhccccccCHH
Q 003400 290 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQD 369 (823)
Q Consensus 290 teedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~~~~~ql~~~~~~~ 369 (823)
++++|+++|+.||+|+.|+.+...+|..||+|+|+.+|++|+++||+.+|.|++|+ ++++.++..+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999998 77777776665554
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccCCCCCCCCccccccCCCCCCCCCCCcCCCCCCCcccCCCCCCcccccccCCCCcCcc
Q 003400 370 ESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQGRG 449 (823)
Q Consensus 370 ~l~~~f~~~GsP~a~spP~~~~~~~~p~~~~~~q~~~~~p~~~~~sP~~~~~~~g~~s~~p~~~s~~~~~~~~~~~~~~~ 449 (823)
..+..++++|.++++|+.|.+ .+.++.++|...... +...++ +-....+...+.-
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~~---------------~~~~g~l~P~~s~~~-------~~~~~~-~~~~~~~~~~~~~ 212 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWPR---------------GQLFGMLSPTRSSIL-------LEHISS-VDGSSPGRETPLL 212 (549)
T ss_pred --chhhhhccchhhcCCCCCCcC---------------Ccceeeeccchhhhh-------hhcchh-ccCccccccccch
Confidence 567789999999999999951 123444666544322 222111 1111111233333
Q ss_pred cchhhhcccccccCCCcccccCCCCCCCCCccCCcccCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCCCCcccCCCCC
Q 003400 450 SLMEHALTNTISANGASFQQSNSFSEPKIGLYRGTVSSFGPSPSNGSGVETLSGPQFLWGSPSRYSEHSSSPAWQTSSMG 529 (823)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~w~~~~~~ 529 (823)
.| |.|.+ ....-+|+++++.. |..+++..++.+++++--+|
T Consensus 213 ~h--q~~~~------~~~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~--------------------- 253 (549)
T KOG4660|consen 213 NH--QRFVE------FADNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVW--------------------- 253 (549)
T ss_pred hh--hhhhh------hccccchhhcccCC----------ceecCCCCceEEecCCCccc---------------------
Confidence 33 33332 11224567777632 66667777888888874444
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCccccCcCCCCCCCccccccCCCCCCCCCcCCCCccccCCCCCCCCCccccccCCCc
Q 003400 530 HPFSSNGKIHGLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRA 609 (823)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 609 (823)
+++... ......+..+++||||+||+ ..+....+++++.+.++++.++.+.
T Consensus 254 n~~~~~---------r~~~~~~~~~~~~hi~~~Ps------------------~~~l~~~~~~~f~~~s~~~~~~~~~-- 304 (549)
T KOG4660|consen 254 NPFPSR---------RQRQNSSSSHYEHHIGSAPS------------------MHHLLSRISVGFNGGSGALEMNSNG-- 304 (549)
T ss_pred CCcccc---------ccccccCcccccCccCCCcc------------------cccccccCccccCCCCCCccccccc--
Confidence 112111 11122344567999999996 1222335566777777776554222
Q ss_pred cCCCC-ccCCCCCCCCCCc-ccccCCCCCCCcccCCCCCCCCCCCccccccc---cccccccccCCCCccccccccccch
Q 003400 610 SVNPG-ITVPRNLSDNGSS-FRVMSSPRLSPVFLGNGPYPGLTPANIEGLYE---RGRSRRIENNNGNQLDSKKQFQLEL 684 (823)
Q Consensus 610 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~r~rr~~~~~~~~~~~~~~~~~~~ 684 (823)
..|-| .+..+++.+..+. +++.+.++..+.|-+++.+. ...+...+ ..+.||.+. ...+ ...+++.+|+
T Consensus 305 ~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~----~~~~~~~~~~~~~~~~Rtt~-~i~n-i~n~~~~~dl 378 (549)
T KOG4660|consen 305 QANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT----SQNDYPVELILNYRDRRTTV-MIKN-IPNKYGQLDL 378 (549)
T ss_pred cCCCCccccCcccccccCCCccccccCCCCcccccccccc----cccccccccccccccchhhh-hhhc-cccchhHHHH
Confidence 23444 4578899888886 99999999999999888653 33444444 777788886 3333 3489999999
Q ss_pred hhHhcCCCcceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCccc
Q 003400 685 EKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWE 764 (823)
Q Consensus 685 ~~i~~g~d~rTt~MirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~ 764 (823)
.+|.+|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+||||||||||++|++|++||++|||++|+
T Consensus 379 ~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 379 LRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred HHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEeeecccHHHHHHHhccCccCCCCCCccceEEcC
Q 003400 765 KFNSEKVASLAYARIQGRAALVAHFQNSSLMNEDKRCRPILFHS 808 (823)
Q Consensus 765 ~~~s~k~~~~~~A~iQg~~~l~~~~~~s~~~~~~~~~~p~~f~~ 808 (823)
+|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++
T Consensus 458 ~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p 501 (549)
T KOG4660|consen 458 KFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP 501 (549)
T ss_pred hhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC
Confidence 99999999999999999999999999999999999999999997
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=2.2e-46 Score=337.58 Aligned_cols=97 Identities=67% Similarity=1.202 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003400 694 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 773 (823)
Q Consensus 694 rTt~MirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 773 (823)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||++++++.+|+++|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccHHHHHHHhc
Q 003400 774 LAYARIQGRAALVAHFQ 790 (823)
Q Consensus 774 ~~~A~iQg~~~l~~~~~ 790 (823)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=1.9e-31 Score=295.35 Aligned_cols=241 Identities=18% Similarity=0.291 Sum_probs=199.3
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 186 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~ 186 (823)
.++++|++||.+++|.++.++|+.+|.| .|..|..++..+|++++.|.+.+.|. .+++..+.+....+....+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 3689999999999999999999999986 67778888889999999999876664 4566666666555544333
Q ss_pred CC-CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccc--cc
Q 003400 187 YG-EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 258 (823)
Q Consensus 187 ~~-e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g--r~ 258 (823)
.. ....++|||+|||.++++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|++.|+|..+.| .+
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 32 235679999999999999999999999999988874 35678999999999999999999999998876 56
Q ss_pred ccccccCCCCCCCC----------------C-------------------------------------------------
Q 003400 259 LDIHFSIPKDNPSD----------------K------------------------------------------------- 273 (823)
Q Consensus 259 L~V~~a~pk~~~~~----------------~------------------------------------------------- 273 (823)
|.|.|+........ .
T Consensus 163 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR01661 163 ITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQ 242 (352)
T ss_pred EEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccc
Confidence 77777643220000 0
Q ss_pred -----------------------CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHH
Q 003400 274 -----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVR 325 (823)
Q Consensus 274 -----------------------~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e 325 (823)
.....+|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~ 322 (352)
T TIGR01661 243 RASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYD 322 (352)
T ss_pred cCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHH
Confidence 000125999999999999999999999999999986 5678999999999999
Q ss_pred HHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 326 AAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 326 ~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
+|.+|+..|||..|+|+.|+|.|..++..
T Consensus 323 ~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 323 EAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999987753
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=273.84 Aligned_cols=244 Identities=20% Similarity=0.313 Sum_probs=208.6
Q ss_pred hhHhhhcCccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCC
Q 003400 106 EDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGA 178 (823)
Q Consensus 106 ~d~l~~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~ 178 (823)
++......-+|+||++||.++.|++|+.||+..|.| +|++|+.++.++|++||+|.....|+ .++++.+..+.
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 455555678999999999999999999999999987 89999999999999999999987665 56777776552
Q ss_pred ccccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEE------eCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 003400 179 GTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLY------TACKHRGFVMISYYDIRAARTAMRALQN 251 (823)
Q Consensus 179 ~~~~~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~------~~~ksrG~AFV~F~~~e~A~~Ai~~Lng 251 (823)
..- ......+++|||+|||.+.++++|++.|++.++ |..|. -..++||||||+|++...|..|.++|-.
T Consensus 155 ~ig----vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 155 LLG----VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred EeE----EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 111 112346799999999999999999999999985 55554 2567999999999999999999998854
Q ss_pred --CccccccccccccCCCCCCCCCCC-CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHH
Q 003400 252 --KPLRRRKLDIHFSIPKDNPSDKDL-NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAE 328 (823)
Q Consensus 252 --~~l~gr~L~V~~a~pk~~~~~~~~-~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~ 328 (823)
..+.|..+.|.||.|...+..+.. .-+.|||+||+.++|+|.|+++|+.||.|..|+.. +.||||.|.++++|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~dav 307 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAV 307 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHH
Confidence 446799999999999887655433 23689999999999999999999999999999864 679999999999999
Q ss_pred HHHHHhCCCccCCceEEEEecCCCcccc
Q 003400 329 AALKSLNRSDIAGKRIKLEPSRPGGARR 356 (823)
Q Consensus 329 kAl~~LnG~~i~Gr~I~V~~s~~~~~r~ 356 (823)
+|++.+||++|+|..|.|.+++|..+++
T Consensus 308 kAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999999999987654
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=3.4e-30 Score=303.25 Aligned_cols=292 Identities=18% Similarity=0.274 Sum_probs=227.5
Q ss_pred CCCCcccccceeecCCcccccccCCCceeeccCCccccccccccccCCCCCcccccCCCccccCCCCCCCCCcccccCCC
Q 003400 18 NIPKEVGGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPA 97 (823)
Q Consensus 18 ~~~~~~~~~t~~~p~~a~~~~~~~d~~~fs~~l~~l~~~k~~~~~~~~~~~~~d~~~~~~kk~~~eee~~k~~ee~e~~~ 97 (823)
...++.++.+|.-+++|.+|+..+++..+.|+-+.|.-.+. +.. ..+
T Consensus 39 ~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~-------------~~~--~~~------------------ 85 (562)
T TIGR01628 39 RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR-------------DPS--LRR------------------ 85 (562)
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc-------------ccc--ccc------------------
Confidence 34556888999999999999999998877776554433110 000 000
Q ss_pred CCCCCCcchhHhhhcCccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----ccc
Q 003400 98 IGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLL 170 (823)
Q Consensus 98 i~n~LP~d~d~l~~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~ 170 (823)
.. ...++|++|+.++++.+++++|+.+|.| .|..+ ..+..++++++.|.+.+.+. .++
T Consensus 86 ------~~--------~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 86 ------SG--------VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred ------cC--------CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 01 2468999999999999999999999987 33333 35667899999999886665 333
Q ss_pred ccccCCCCccccCCC------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHH
Q 003400 171 HYSVPNGAGTVAGEH------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIR 240 (823)
Q Consensus 171 ~~~l~n~~~~~~~~~------~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e 240 (823)
+..+.+....+.... .......++|||+|||.++|+++|+++|++||+|.++.+ .++++|||||+|.+.+
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e 230 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHE 230 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 333333322221111 112334578999999999999999999999999999874 4567899999999999
Q ss_pred HHHHHHHHhcCCccc----cccccccccCCCCCCC--------------CCCCCccceeeecCCCCCCHHHHHHHhcccC
Q 003400 241 AARTAMRALQNKPLR----RRKLDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302 (823)
Q Consensus 241 ~A~~Ai~~Lng~~l~----gr~L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG 302 (823)
+|.+|++.|++..+. |+.|.|.++..+.... .......+|||+||+.++|+++|+++|++||
T Consensus 231 ~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G 310 (562)
T TIGR01628 231 DAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECG 310 (562)
T ss_pred HHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcC
Confidence 999999999999999 9999998876554321 0122345899999999999999999999999
Q ss_pred ceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccch
Q 003400 303 EVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRN 357 (823)
Q Consensus 303 ~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~~ 357 (823)
.|++|++ ++.++|||||+|.+.++|.+|++.|||..+.|++|.|.++.++..++.
T Consensus 311 ~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~ 369 (562)
T TIGR01628 311 EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRA 369 (562)
T ss_pred CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHH
Confidence 9999976 467899999999999999999999999999999999999998876654
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1e-29 Score=299.25 Aligned_cols=265 Identities=19% Similarity=0.338 Sum_probs=217.9
Q ss_pred ccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCcccccc----ccccccCCCCccccCC--CC
Q 003400 116 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGE--HP 186 (823)
Q Consensus 116 el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~----~~~~~l~n~~~~~~~~--~~ 186 (823)
.++|++|+.+++|.+|+++|+.+|.| .|..|..+..++|++++.|.+...|.. ++...+.+...++... .+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 58999999999999999999999986 667777778889999999999876652 3333343333333211 11
Q ss_pred -CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 -YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 -~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
......++|||+|||.++++++|+++|++||.|.+|++ .++++|||||+|.+.++|++|++.|+|..+.++.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 12223568999999999999999999999999999874 4568999999999999999999999999999999999
Q ss_pred cccCCCCCCC-CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 003400 262 HFSIPKDNPS-DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (823)
Q Consensus 262 ~~a~pk~~~~-~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG 336 (823)
....++.... ......++|||+||+.++|+++|+++|+.||.|.++++ .++++|||||+|.+.++|.+|++.|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 8765544331 22334568999999999999999999999999999876 345789999999999999999999999
Q ss_pred CccC----CceEEEEecCCCccc----------------------chhhhccccccCHHHHHHHHhhcCC
Q 003400 337 SDIA----GKRIKLEPSRPGGAR----------------------RNLMLQLNQELEQDESRILQHQVGS 380 (823)
Q Consensus 337 ~~i~----Gr~I~V~~s~~~~~r----------------------~~~~~ql~~~~~~~~l~~~f~~~Gs 380 (823)
..+. |+.|.|.+++.+..+ ..++.++...++.++++.+|.+||.
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~ 311 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE 311 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC
Confidence 9999 999999988766544 1356778888999999999999984
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.1e-29 Score=257.57 Aligned_cols=213 Identities=25% Similarity=0.420 Sum_probs=177.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
++..++|+|..||.++|++|||.+|...|+|++|+ +++.+.||+||.|.+++||++|+..|+|.+++.+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44568899999999999999999999999999998 5889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 003400 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (823)
Q Consensus 264 a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (823)
++|.. ..+...+|||++||+.+|..||+++|++||.|+..|+ ++.+||.|||+|+.+.+|++||+.|||..
T Consensus 118 ARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 98754 4566789999999999999999999999999988764 67899999999999999999999999998
Q ss_pred cCC--ceEEEEecCCCcccchhhhccccccCHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCcccccc------CCCC
Q 003400 339 IAG--KRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTIS------KSPN 410 (823)
Q Consensus 339 i~G--r~I~V~~s~~~~~r~~~~~ql~~~~~~~~l~~~f~~~GsP~a~spP~~~~~~~~p~~~~~~q~~~------~~p~ 410 (823)
..| .+|.|+|+....++..... +. +-|++|. +++++|++| +.|++. +...
T Consensus 194 P~g~tepItVKFannPsq~t~~a~----------ls---~ly~sp~--------rr~~Gp~hh-~~~r~r~~~~~~~~~~ 251 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQAL----------LS---QLYQSPA--------RRYGGPMHH-QAQRFRLDNLLNPHAA 251 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhh----------hH---HhhcCcc--------ccCCCcccc-hhhhhccccccchhhh
Confidence 887 6899999988755443211 11 1233332 567889888 555542 2223
Q ss_pred CCCCCCCcCCCCCCCcc
Q 003400 411 FRNMSPTTSNHMPGLAS 427 (823)
Q Consensus 411 ~~~~sP~~~~~~~g~~s 427 (823)
..+|||++.+++.|+++
T Consensus 252 ~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 252 QARFSPMTIDGMSGLAG 268 (360)
T ss_pred hccCCCccccccceeee
Confidence 45888888888777643
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3e-27 Score=261.87 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=143.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 5789999999999999999999999999999874 46789999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (823)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 6543 234568999999999999999999999999988865 3457899999999999999999999999998
Q ss_pred C--ceEEEEecCCCc
Q 003400 341 G--KRIKLEPSRPGG 353 (823)
Q Consensus 341 G--r~I~V~~s~~~~ 353 (823)
| .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678888887654
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.6e-28 Score=284.33 Aligned_cols=235 Identities=21% Similarity=0.316 Sum_probs=193.2
Q ss_pred hcCccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCc-ccc
Q 003400 111 AGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAG-TVA 182 (823)
Q Consensus 111 ~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~-~~~ 182 (823)
....+++||++||.+++|.+|+++|+.+|.| .|..| .++.+++++++.|.+.+.+. .++.+.+.++.. .+.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 3356899999999999999999999999976 67677 77889999999999887665 344455543311 111
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEEe------CCCcccEEEEEeCCHHHHHHHHHHhcC--Cc
Q 003400 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMRALQN--KP 253 (823)
Q Consensus 183 ~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~------~~ksrG~AFV~F~~~e~A~~Ai~~Lng--~~ 253 (823)
.....++|||+|||.++++++|++.|++++. |..+.+ ..+++|||||+|.+.++|.+|++.|.. ..
T Consensus 134 -----~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 134 -----ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred -----ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 1234689999999999999999999999964 333322 346899999999999999999998864 35
Q ss_pred cccccccccccCCCCCCCCCC-CCccceeeecCCCCCCHHHHHHHhccc--CceEEEEeCCCcccEEEEEEcCHHHHHHH
Q 003400 254 LRRRKLDIHFSIPKDNPSDKD-LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAA 330 (823)
Q Consensus 254 l~gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~~vteedL~~~Fs~f--G~I~~iri~~~srG~aFVeF~d~e~A~kA 330 (823)
+.|+.|.|.|+.++....... ...++|||+||+.++++++|+++|++| |+|++|++. ++||||+|.+.++|++|
T Consensus 209 l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKA 285 (578)
T ss_pred ecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHH
Confidence 789999999998765443322 234689999999999999999999999 999999764 67999999999999999
Q ss_pred HHHhCCCccCCceEEEEecCCCcc
Q 003400 331 LKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 331 l~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
++.|||.+|.|+.|+|+|+++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999988653
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=1.1e-27 Score=276.78 Aligned_cols=262 Identities=18% Similarity=0.233 Sum_probs=197.5
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcEE-EeccCccCcccceeEeeecCcccccccc------ccccCCCCccccCC---
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGME-LEGEPQESLSMSMSKISISDSASGNGLL------HYSVPNGAGTVAGE--- 184 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v~-V~~d~~es~~~g~~~v~~~e~~~a~~~~------~~~l~n~~~~~~~~--- 184 (823)
..++|++||.+++|.+++++|+.||.|. +.+- ..++++++.|.+.+.|.... ...+.+....+...
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~----~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMML----PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE----CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 5689999999999999999999999982 2111 13578888888876665322 22333332222111
Q ss_pred ---CCC-------CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCC-cccEEEEEeCCHHHHHHHHHHhcCCc
Q 003400 185 ---HPY-------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNKP 253 (823)
Q Consensus 185 ---~~~-------~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k-srG~AFV~F~~~e~A~~Ai~~Lng~~ 253 (823)
.+. ......+|||+||+..+|+++|+++|+.||+|.+|.+..+ .+++|||+|.+.++|.+|++.|+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 000 0112247999999999999999999999999999986433 34799999999999999999999999
Q ss_pred ccc--ccccccccCCCCC-------CC----------C------------------------------------------
Q 003400 254 LRR--RKLDIHFSIPKDN-------PS----------D------------------------------------------ 272 (823)
Q Consensus 254 l~g--r~L~V~~a~pk~~-------~~----------~------------------------------------------ 272 (823)
|.+ +.|+|.|+.+... .. +
T Consensus 159 i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGG 238 (481)
T ss_pred ccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccc
Confidence 965 4777777654210 00 0
Q ss_pred --------------------------------CCCCccceeeecCCC-CCCHHHHHHHhcccCceEEEEeCCCcccEEEE
Q 003400 273 --------------------------------KDLNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFI 319 (823)
Q Consensus 273 --------------------------------~~~~~~tLfV~NLp~-~vteedL~~~Fs~fG~I~~iri~~~srG~aFV 319 (823)
......+|||+||+. .+|+++|+++|+.||.|.+|++...++|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV 318 (481)
T TIGR01649 239 DRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALI 318 (481)
T ss_pred ccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEE
Confidence 001235899999998 69999999999999999999987667899999
Q ss_pred EEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc-----------------------------------------cchh
Q 003400 320 EFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA-----------------------------------------RRNL 358 (823)
Q Consensus 320 eF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~-----------------------------------------r~~~ 358 (823)
+|.+.++|.+|++.|||..|.|++|+|.+++.... +..+
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~ 398 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLH 398 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEE
Confidence 99999999999999999999999999998854210 1123
Q ss_pred hhccccccCHHHHHHHHhhcCC
Q 003400 359 MLQLNQELEQDESRILQHQVGS 380 (823)
Q Consensus 359 ~~ql~~~~~~~~l~~~f~~~Gs 380 (823)
+.++...+++++++.+|..+|.
T Consensus 399 v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 399 LSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred EecCCCCCCHHHHHHHHHhcCC
Confidence 5566667788888888888773
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.9e-27 Score=240.20 Aligned_cols=215 Identities=18% Similarity=0.346 Sum_probs=177.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccccccccccCCCCccccCCCCC-CC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPY-GE 189 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~~~~~~l~n~~~~~~~~~~~-~e 189 (823)
.+.|||++|...++|+-+..||.+.|.| .|.+|.. ++ .++.. .+.+.. ..
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~--------~v-----~wa~~-------------p~nQsk~t~ 59 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL--------KV-----NWATA-------------PGNQSKPTS 59 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhhh--------cc-----ccccC-------------cccCCCCcc
Confidence 4679999999999999999999999987 4555510 01 00000 011110 11
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...-.+||+.|...++-++||+.|.+||+|.++++ +.++|||+||.|.+.++|++||..|+|..|.+|.|+-.|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 12457999999999999999999999999998873 7899999999999999999999999999999999999999
Q ss_pred CCCCCCCC------------CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHH
Q 003400 265 IPKDNPSD------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALK 332 (823)
Q Consensus 265 ~pk~~~~~------------~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~ 332 (823)
..|..... .....++|||+|++.-+||++|++.|++||.|.+||+.+ -+||+||+|++.|+|.+||.
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHH
Confidence 76542211 123457999999999999999999999999999999974 57999999999999999999
Q ss_pred HhCCCccCCceEEEEecCCCccc
Q 003400 333 SLNRSDIAGKRIKLEPSRPGGAR 355 (823)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s~~~~~r 355 (823)
.+|+.+|.|+.+++.|.+.....
T Consensus 219 ~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999876543
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9.3e-28 Score=243.59 Aligned_cols=246 Identities=19% Similarity=0.305 Sum_probs=204.5
Q ss_pred cccccCCCCCCCCCcchhHhhhcCccccccccCCCCCChHHHHHhhcCCCcEEEeccCccCcccceeEeeecCccccc--
Q 003400 90 LEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN-- 167 (823)
Q Consensus 90 ~ee~e~~~i~n~LP~d~d~l~~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v~V~~d~~es~~~g~~~v~~~e~~~a~-- 167 (823)
.++.+...|.|+||.. |++..++.||.+++|+|.+++.+ |..++.+.|+.|+.+.+..++.
T Consensus 37 t~~skTNLIvNYLPQ~--------MTqdE~rSLF~SiGeiEScKLvR---------DKitGqSLGYGFVNYv~p~DAe~A 99 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQN--------MTQDELRSLFGSIGEIESCKLVR---------DKITGQSLGYGFVNYVRPKDAEKA 99 (360)
T ss_pred cCcccceeeeeecccc--------cCHHHHHHHhhcccceeeeeeee---------ccccccccccceeeecChHHHHHH
Confidence 3456678899999988 78878888888888888766654 5678888899999998876554
Q ss_pred --cccccccCCCCccccCCCCCCC-CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCH
Q 003400 168 --GLLHYSVPNGAGTVAGEHPYGE-HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDI 239 (823)
Q Consensus 168 --~~~~~~l~n~~~~~~~~~~~~e-~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~ 239 (823)
.+++..+.++.++++..+|..+ ....+|||.+||..+|..||+.+|++||.|..-+ +++.+||.+||.|...
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 6788889999999999888754 4567999999999999999999999999987654 5788999999999999
Q ss_pred HHHHHHHHHhcCCcccc--ccccccccCCCCCCCC------------------------C--------------------
Q 003400 240 RAARTAMRALQNKPLRR--RKLDIHFSIPKDNPSD------------------------K-------------------- 273 (823)
Q Consensus 240 e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk~~~~~------------------------~-------------------- 273 (823)
++|+.||+.|+|..-.| .+|.|+|+........ +
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~ 259 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMT 259 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcc
Confidence 99999999999988665 4788888643211100 0
Q ss_pred ---------------CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 003400 274 ---------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 274 ---------------~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~ 333 (823)
.....+|||.||.++.+|.-|+++|++||.|..|++ +.+.+|||||.+.+.++|..||..
T Consensus 260 ~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~s 339 (360)
T KOG0145|consen 260 IDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 339 (360)
T ss_pred ccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHH
Confidence 001148999999999999999999999999999875 467899999999999999999999
Q ss_pred hCCCccCCceEEEEecCCC
Q 003400 334 LNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 334 LnG~~i~Gr~I~V~~s~~~ 352 (823)
|||..+++|.|.|.|...+
T Consensus 340 LNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 340 LNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred hcCccccceEEEEEEecCC
Confidence 9999999999999997554
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=1.1e-26 Score=256.65 Aligned_cols=163 Identities=23% Similarity=0.419 Sum_probs=145.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
.....++|||+|||+++|+++|+++|+.||+|++|++ +++++|||||+|.++++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3446799999999999999999999999999999874 56788999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003400 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (823)
Q Consensus 263 ~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (823)
|+.+... .....+|||.|||.++|+++|+++|++||.|+.|++ ++++++||||+|.+.++|++||+.||+.
T Consensus 183 ~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 183 YARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 9876432 234568999999999999999999999999999875 4567899999999999999999999999
Q ss_pred ccCC--ceEEEEecCCCcc
Q 003400 338 DIAG--KRIKLEPSRPGGA 354 (823)
Q Consensus 338 ~i~G--r~I~V~~s~~~~~ 354 (823)
.+.| ++|+|++++....
T Consensus 259 ~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ccCCCceeEEEEECCcccc
Confidence 8876 7899999886543
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=8.1e-26 Score=261.31 Aligned_cols=163 Identities=25% Similarity=0.330 Sum_probs=140.8
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 190 HPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 190 ~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
.++++|||+|||. .+|+++|+++|+.||+|.+|++....+|||||+|.+.++|++|++.|+|..|.|++|+|.++..+.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 3668999999998 699999999999999999999766678999999999999999999999999999999999875431
Q ss_pred CCCC------------C---------------------CCCccceeeecCCCCCCHHHHHHHhcccCc--eEEEEeCCC-
Q 003400 269 NPSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRETPH- 312 (823)
Q Consensus 269 ~~~~------------~---------------------~~~~~tLfV~NLp~~vteedL~~~Fs~fG~--I~~iri~~~- 312 (823)
.... + .....+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 353 ~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~ 432 (481)
T TIGR01649 353 VQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD 432 (481)
T ss_pred ccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC
Confidence 1000 0 012358999999999999999999999998 888877433
Q ss_pred --cccEEEEEEcCHHHHHHHHHHhCCCccCCce------EEEEecCCC
Q 003400 313 --KRHHKFIEFYDVRAAEAALKSLNRSDIAGKR------IKLEPSRPG 352 (823)
Q Consensus 313 --srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~------I~V~~s~~~ 352 (823)
++++|||+|.+.++|.+||..|||+.|.|+. |+|.|++++
T Consensus 433 ~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 433 NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999764
No 15
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=3.3e-27 Score=267.46 Aligned_cols=326 Identities=18% Similarity=0.184 Sum_probs=252.0
Q ss_pred CcccccceeecCCcccccccCCCceeeccCCccccccccccccCCCCCcccccCCCccccCCCCCCCCCcccccCCCCCC
Q 003400 21 KEVGGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGN 100 (823)
Q Consensus 21 ~~~~~~t~~~p~~a~~~~~~~d~~~fs~~l~~l~~~k~~~~~~~~~~~~~d~~~~~~kk~~~eee~~k~~ee~e~~~i~n 100 (823)
+.+++.+|++|++|+++|.++|+.+|+|||+|+++.+.+.+.. ...+.....||+ +++.+.+.....-..||
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~----~~~~~~~~~~k~----~ke~~rk~~~~~~~~wn 317 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAK----EDASELGSDYKK----EKELKRKAASASFHSWN 317 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhh----hhHhhcCCcHHH----HHHhccccchhcceecc
Confidence 3448899999999999999999999999999999998765433 223333344766 67777777777778999
Q ss_pred CCCcchhHhhhcCccccccccCCCCCChHHHHHhhcCCCcEEEeccCccCcccceeEeeecCccccccccccccCCCCcc
Q 003400 101 SLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGT 180 (823)
Q Consensus 101 ~LP~d~d~l~~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v~V~~d~~es~~~g~~~v~~~e~~~a~~~~~~~l~n~~~~ 180 (823)
.|..++++++..++.++.|.+. + +.+.+.... .+++.+.+......+..+...+++..
T Consensus 318 ~l~~~~~ava~~~a~k~~v~k~--------------~-------i~d~~~~gs-avr~al~etr~~~e~~~~~ee~gV~l 375 (725)
T KOG0110|consen 318 TLFMGANAVAGILAQKLGVEKS--------------R-------ILDGSLSGS-AVRLALGETRVVQEVRRFFEENGVKL 375 (725)
T ss_pred cccccccHHHHHHHHHhCCeee--------------e-------eechhhcch-HHHHHHHHhhhchhhhhhHHhhCccc
Confidence 9999999999988888888661 0 111111111 34555556666666666667776655
Q ss_pred ccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 181 VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 181 ~~~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
..... .++..+.|+|+|||..+..++|..+|..||+|..|.+ ....-.++|+|.+..+|++|++.|.+..+...+++
T Consensus 376 ~~F~~--~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvll-p~~G~~aiv~fl~p~eAr~Afrklaysr~k~~ply 452 (725)
T KOG0110|consen 376 DAFSQ--AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLL-PPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLY 452 (725)
T ss_pred ccchh--hhhhcceeeeccCccccccHHHHHHhhcccccceeec-CcccceeeeeecCccchHHHHHHhchhhhccCccc
Confidence 55544 6678899999999999999999999999999999944 44444599999999999999999999999999999
Q ss_pred ccccCCCCCC--------------------CC------------CC-------------CCc-cceeeecCCCCCCHHHH
Q 003400 261 IHFSIPKDNP--------------------SD------------KD-------------LNQ-GTLVVFNLDPSVSNEDL 294 (823)
Q Consensus 261 V~~a~pk~~~--------------------~~------------~~-------------~~~-~tLfV~NLp~~vteedL 294 (823)
+.|+....-. .. .+ ... ++|||.||++++|.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 8885211000 00 00 011 24999999999999999
Q ss_pred HHHhcccCceEEEEeCCC--------cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC--------CCc---c-
Q 003400 295 RQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR--------PGG---A- 354 (823)
Q Consensus 295 ~~~Fs~fG~I~~iri~~~--------srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~--------~~~---~- 354 (823)
..+|...|.|.++.|..+ ++|||||+|.+.++|+.|++.|+|+.|+|+.|.|+++. ++. .
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~ 612 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKK 612 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccc
Confidence 999999999999976322 45999999999999999999999999999999999998 111 1
Q ss_pred -cchhhhccccccCHHHHHHHHhhcC
Q 003400 355 -RRNLMLQLNQELEQDESRILQHQVG 379 (823)
Q Consensus 355 -r~~~~~ql~~~~~~~~l~~~f~~~G 379 (823)
.+.+++++.-+.+..+++..|..||
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhccc
Confidence 1346777877888899999999987
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=6e-25 Score=252.24 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=188.1
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc---cccccccCCCCccccC----
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVAG---- 183 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~---~~~~~~l~n~~~~~~~---- 183 (823)
...++|++||..+++.+|.++|+.+|.| .|..+..++..+|+++|.|.+...+. .+.+..+.+....+..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 4679999999999999999999999987 66677777888999999999876554 2333333322211110
Q ss_pred ---------CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHh
Q 003400 184 ---------EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 249 (823)
Q Consensus 184 ---------~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~L 249 (823)
.........++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|+..|
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 00111123689999999999999999999999999999874 3478899999999999999999999
Q ss_pred cCCccccccccccccCCCCCCC----------------------------------------------------------
Q 003400 250 QNKPLRRRKLDIHFSIPKDNPS---------------------------------------------------------- 271 (823)
Q Consensus 250 ng~~l~gr~L~V~~a~pk~~~~---------------------------------------------------------- 271 (823)
+|..|.|++|.|.|+.......
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999953110000
Q ss_pred -------C---------------------CCCCccceeeecCCCCCC----------HHHHHHHhcccCceEEEEeC-CC
Q 003400 272 -------D---------------------KDLNQGTLVVFNLDPSVS----------NEDLRQIFGAYGEVKEIRET-PH 312 (823)
Q Consensus 272 -------~---------------------~~~~~~tLfV~NLp~~vt----------eedL~~~Fs~fG~I~~iri~-~~ 312 (823)
. ......+|+|.||....+ .+||++.|++||.|+.|.+. +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~ 408 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN 408 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 0 002235788888855443 36899999999999999875 67
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 313 srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
..|++||+|.++++|.+|++.|||..++|+.|.|.+...
T Consensus 409 ~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 409 SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 789999999999999999999999999999999999754
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=1.2e-24 Score=252.99 Aligned_cols=237 Identities=16% Similarity=0.211 Sum_probs=175.8
Q ss_pred CccccccccCCCCCChHHHHHhhcCCC-----------cEEEeccCccCcccceeEeeecCcccccc---ccccccCCCC
Q 003400 113 IMDDFDLRGLPSSLEDLEDYDIFGSGG-----------GMELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGA 178 (823)
Q Consensus 113 v~~el~V~~Lp~~~~E~el~dlFs~~G-----------~v~V~~d~~es~~~g~~~v~~~e~~~a~~---~~~~~l~n~~ 178 (823)
.+.+|||++||.++++.+|.++|.+++ .+.+ +......++|+||.|.+.+.|.. +++..+.+..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~--~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVS--SVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceE--EEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 357899999999999999999999752 1111 11123346788888877655542 2222222221
Q ss_pred ccccCC------------------------------CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----
Q 003400 179 GTVAGE------------------------------HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---- 224 (823)
Q Consensus 179 ~~~~~~------------------------------~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---- 224 (823)
.++... ........++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 252 l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 331 (509)
T TIGR01642 252 LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI 331 (509)
T ss_pred eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence 111000 0001234589999999999999999999999999998863
Q ss_pred -CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCCC------------------------CCCCccc
Q 003400 225 -ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD------------------------KDLNQGT 279 (823)
Q Consensus 225 -~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~------------------------~~~~~~t 279 (823)
+++++|||||+|.+.++|..|+..|+|..|.|++|.|.++........ ......+
T Consensus 332 ~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v 411 (509)
T TIGR01642 332 ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKV 411 (509)
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceE
Confidence 467899999999999999999999999999999999999754321110 0113457
Q ss_pred eeeecCCCC--C--------CHHHHHHHhcccCceEEEEeCC--------CcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003400 280 LVVFNLDPS--V--------SNEDLRQIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (823)
Q Consensus 280 LfV~NLp~~--v--------teedL~~~Fs~fG~I~~iri~~--------~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (823)
|+|.|+... + ..++|+++|++||.|+.|++.. ...|++||+|.+.++|++|+..|||..|.|
T Consensus 412 ~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g 491 (509)
T TIGR01642 412 VQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND 491 (509)
T ss_pred EEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 899998532 1 2367999999999999998742 236899999999999999999999999999
Q ss_pred ceEEEEecCC
Q 003400 342 KRIKLEPSRP 351 (823)
Q Consensus 342 r~I~V~~s~~ 351 (823)
+.|.|.|...
T Consensus 492 r~v~~~~~~~ 501 (509)
T TIGR01642 492 RVVVAAFYGE 501 (509)
T ss_pred eEEEEEEeCH
Confidence 9999999754
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2.1e-24 Score=250.49 Aligned_cols=163 Identities=20% Similarity=0.402 Sum_probs=143.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4589999999999999999999999999999984 57899999999999999999999999999999999998654
Q ss_pred CCCCCC-------CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 003400 266 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 266 pk~~~~-------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~ 333 (823)
...... .......+|||+||+.++++++|+++|+.||.|++|++ ++.++|||||+|.+.++|.+||..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 221110 11123468999999999999999999999999999976 345799999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 003400 334 LNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 334 LnG~~i~Gr~I~V~~s~~~~ 353 (823)
|||..|+|+.|+|.++.++.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999987653
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.7e-23 Score=225.40 Aligned_cols=164 Identities=23% Similarity=0.437 Sum_probs=143.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCc-ccc--ccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDI 261 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~-l~g--r~L~V 261 (823)
.+.-+|||+-||..++|+|||++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.. |.| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4557899999999999999999999999999986 477899999999999999999999998855 444 68888
Q ss_pred cccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003400 262 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (823)
Q Consensus 262 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (823)
+|+....... ..+.+|||+-|++.+||.|++++|++||.|++|++ .+.+||||||+|.+.+.|..||++|||.
T Consensus 112 k~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 8886543322 34678999999999999999999999999999976 4678999999999999999999999996
Q ss_pred -ccCC--ceEEEEecCCCcccc
Q 003400 338 -DIAG--KRIKLEPSRPGGARR 356 (823)
Q Consensus 338 -~i~G--r~I~V~~s~~~~~r~ 356 (823)
.+.| .+|.|+|+++++.|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 6777 689999999887654
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.7e-23 Score=227.85 Aligned_cols=242 Identities=19% Similarity=0.294 Sum_probs=190.1
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccc------
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTV------ 181 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~------ 181 (823)
..|+|++||.++...++-++|+.+|+| +|..+...+..+||.+++|.-.+.++ +..+..+.+....+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 569999999999999999999999997 78788888888999999887554433 11111111110000
Q ss_pred -------cC-----CCCC---------CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEe
Q 003400 182 -------AG-----EHPY---------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISY 236 (823)
Q Consensus 182 -------~~-----~~~~---------~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F 236 (823)
.+ +.+. ...+.-+|+|+|||+.+.+.+|+.+|+.||.|..|.+ .++-+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 00 0111 1223678999999999999999999999999999985 345569999999
Q ss_pred CCHHHHHHHHHHhcCCccccccccccccCCCCCCCC-----------------------------------------C--
Q 003400 237 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD-----------------------------------------K-- 273 (823)
Q Consensus 237 ~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~-----------------------------------------~-- 273 (823)
....+|..|++.+++..|.|++|-|.||.++..-.. +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999865532100 0
Q ss_pred CC-------------------------------------------CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-
Q 003400 274 DL-------------------------------------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 309 (823)
Q Consensus 274 ~~-------------------------------------------~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri- 309 (823)
+. ...+|||+|||+++|+++|.++|++||.|.++.+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 00 0148999999999999999999999999999864
Q ss_pred ----CCCcccEEEEEEcCHHHHHHHHHHh-----CC-CccCCceEEEEecCCCcccc
Q 003400 310 ----TPHKRHHKFIEFYDVRAAEAALKSL-----NR-SDIAGKRIKLEPSRPGGARR 356 (823)
Q Consensus 310 ----~~~srG~aFVeF~d~e~A~kAl~~L-----nG-~~i~Gr~I~V~~s~~~~~r~ 356 (823)
++.++|.|||.|.+..+|..||... .| ..+.||.|+|..+-.+....
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 7889999999999999999999976 24 67899999999987765443
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=8.2e-23 Score=234.59 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=143.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3567899999999999999999999999999999984 46789999999999999999997 89999999999998
Q ss_pred ccCCCCCCCC--------CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHH
Q 003400 263 FSIPKDNPSD--------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 329 (823)
Q Consensus 263 ~a~pk~~~~~--------~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~k 329 (823)
++........ ......+|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322110 11224789999999999999999999999999999763 4678999999999999999
Q ss_pred HHHHhCCCccCCceEEEEecCC
Q 003400 330 ALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 330 Al~~LnG~~i~Gr~I~V~~s~~ 351 (823)
|++.|||..|.|+.|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.5e-23 Score=225.92 Aligned_cols=241 Identities=18% Similarity=0.318 Sum_probs=194.0
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccccc-----cccccCCC--CccccC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL-----LHYSVPNG--AGTVAG 183 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~~-----~~~~l~n~--~~~~~~ 183 (823)
+-++||+.+|+.+.|.+++.+|+.||.| -|..|..+...+|++|+.+.....+.+. +...+++. ...+..
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 4679999999999999999999999987 5678888999999999999987655421 12223322 122222
Q ss_pred CCCCCC--CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCc-ccc
Q 003400 184 EHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRR 256 (823)
Q Consensus 184 ~~~~~e--~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~-l~g 256 (823)
.....+ ...++|||+-|++.+||.|++++|++||.|++|++ .+.+||||||.|.+.|.|..||++|+|.. ++|
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 222222 24789999999999999999999999999999984 56799999999999999999999999964 554
Q ss_pred --ccccccccCCCCCCCCCC------------------------------------------------------------
Q 003400 257 --RKLDIHFSIPKDNPSDKD------------------------------------------------------------ 274 (823)
Q Consensus 257 --r~L~V~~a~pk~~~~~~~------------------------------------------------------------ 274 (823)
.+|.|+|+.+++++..+.
T Consensus 194 cs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~ 273 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQ 273 (510)
T ss_pred CCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhH
Confidence 588888876654321000
Q ss_pred --------------------------------------------------------------------------------
Q 003400 275 -------------------------------------------------------------------------------- 274 (823)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (823)
T Consensus 274 ~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~ 353 (510)
T KOG0144|consen 274 LQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAG 353 (510)
T ss_pred HHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------CCccceeeecCC
Q 003400 275 --------------------------------------------------------------------LNQGTLVVFNLD 286 (823)
Q Consensus 275 --------------------------------------------------------------------~~~~tLfV~NLp 286 (823)
....+|||.+||
T Consensus 354 a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlP 433 (510)
T KOG0144|consen 354 AGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLP 433 (510)
T ss_pred ccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCc
Confidence 000379999999
Q ss_pred CCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 287 PSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 287 ~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
.+.-+.+|-..|..||.|++.++ ++-++.|+||.|++..+|..||..|||..|+.++++|...+.+.+
T Consensus 434 qefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 434 QEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred hhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999998753 667899999999999999999999999999999999998876543
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=3.6e-22 Score=231.63 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=153.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccc-cccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~-gr~L~V~~a~ 265 (823)
..++|||+|||.+++|++|+++|++||.|.+|++ +++++|||||+|.+.++|++||+.|++..+. ++.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4589999999999999999999999999999874 5789999999999999999999999999986 7788777653
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCc-eEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhCC--
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNR-- 336 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~-I~~iri------~~~srG~aFVeF~d~e~A~kAl~~LnG-- 336 (823)
..++|||+|||.++++++|.+.|++++. ++++.+ ..+++|||||+|.+.++|++|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 3468999999999999999999999863 443322 235689999999999999999998864
Q ss_pred CccCCceEEEEecCCCcc---------cchhhhccccccCHHHHHHHHhhc
Q 003400 337 SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQV 378 (823)
Q Consensus 337 ~~i~Gr~I~V~~s~~~~~---------r~~~~~ql~~~~~~~~l~~~f~~~ 378 (823)
..+.|+.|.|+|+.+... +..++.++...++++++..+|.++
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 367899999999987532 345788999999999999999999
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=2.8e-21 Score=224.58 Aligned_cols=154 Identities=13% Similarity=0.246 Sum_probs=126.4
Q ss_pred cCccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCC
Q 003400 112 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGE 184 (823)
Q Consensus 112 ~v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~ 184 (823)
..++++||++|+.+++|.+++++|+.||.| .+..|..++..+||+|+.|.+...+. .+++..+.+...++...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 357899999999999999999999999997 67778888899999999999886665 34455555443333211
Q ss_pred C------C------CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHH
Q 003400 185 H------P------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 247 (823)
Q Consensus 185 ~------~------~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~ 247 (823)
. + ......++|||+|||.++++++|+++|+.||+|.+|++ +++++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 1 0 11124579999999999999999999999999999874 45789999999999999999999
Q ss_pred HhcCCccccccccccccC
Q 003400 248 ALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 248 ~Lng~~l~gr~L~V~~a~ 265 (823)
.||+..+.|+.|+|.++.
T Consensus 265 amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HhCCCeeCCeEEEEEecC
Confidence 999999999999987754
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=1.3e-21 Score=227.56 Aligned_cols=164 Identities=16% Similarity=0.277 Sum_probs=136.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcC------------CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~f------------G~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l 254 (823)
......++|||+|||.++|+++|+++|.+| +.|..+. ..+.+|||||+|.+.++|..||. |+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345677999999999999999999999975 3445443 46789999999999999999995 999999
Q ss_pred ccccccccccCCCCCC------------C-------------CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe
Q 003400 255 RRRKLDIHFSIPKDNP------------S-------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (823)
Q Consensus 255 ~gr~L~V~~a~pk~~~------------~-------------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri 309 (823)
.|+.|+|......... . .......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999998743211100 0 00112358999999999999999999999999998865
Q ss_pred -----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 310 -----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 310 -----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 4668999999999999999999999999999999999998654
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=3e-21 Score=209.23 Aligned_cols=180 Identities=22% Similarity=0.351 Sum_probs=158.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccc-ccccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFS 264 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~-gr~L~V~~a 264 (823)
-.+-|||+.||.++.|+||.-+|++.|+|-.+++ ++.+||||||.|.+.++|++|++.||+.+|+ |+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 4589999999999999999999999999999983 6789999999999999999999999999996 899999876
Q ss_pred CCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCc-eEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhC-C
Q 003400 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLN-R 336 (823)
Q Consensus 265 ~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~-I~~iri------~~~srG~aFVeF~d~e~A~kAl~~Ln-G 336 (823)
. ..++|||+|||++.++++|.+.+++.++ |.+|.+ ..++||||||+|+++..|..|.+.|- |
T Consensus 162 v----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 162 V----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred e----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 4 4578999999999999999999999863 455533 34689999999999999999998774 4
Q ss_pred -CccCCceEEEEecCCCcc---------cchhhhccccccCHHHHHHHHhhcCC
Q 003400 337 -SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQVGS 380 (823)
Q Consensus 337 -~~i~Gr~I~V~~s~~~~~---------r~~~~~ql~~~~~~~~l~~~f~~~Gs 380 (823)
.++.|+.+.|+|+.+... +..|++++...++++.+...|.++|.
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred ceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 378899999999998653 24589999999999999999999873
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.5e-20 Score=209.15 Aligned_cols=229 Identities=15% Similarity=0.320 Sum_probs=187.2
Q ss_pred ccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCCCC
Q 003400 116 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYG 188 (823)
Q Consensus 116 el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~~~ 188 (823)
.++|+ .+++|..++++|+..|.+ .|..|. + +.|++++.|.+...+. .++...+.+...++.-.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s---- 72 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS---- 72 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh----
Confidence 36777 899999999999999986 787777 5 7889999999887665 34444444443333222
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
.++.+.|||+||+++++.++|.++|+.||+|.+|++ ..-++|| ||+|.+.++|++|+..++|..+.+++|.|....
T Consensus 73 ~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 73 QRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred ccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 223334999999999999999999999999999994 2338899 999999999999999999999999999998776
Q ss_pred CCCCCCCC----CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003400 266 PKDNPSDK----DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (823)
Q Consensus 266 pk~~~~~~----~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (823)
.+...... ...-.+++|.|++.+++++.|.+.|..||.|..+.+ .+++++|+||+|.+.++|..|++.|++.
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC
Confidence 55433221 122468999999999999999999999999999865 4557999999999999999999999999
Q ss_pred ccCCceEEEEecCCCccc
Q 003400 338 DIAGKRIKLEPSRPGGAR 355 (823)
Q Consensus 338 ~i~Gr~I~V~~s~~~~~r 355 (823)
.+.++.+.|..+..+..+
T Consensus 232 ~~~~~~~~V~~aqkk~e~ 249 (369)
T KOG0123|consen 232 IFGDKELYVGRAQKKSER 249 (369)
T ss_pred cCCccceeecccccchhh
Confidence 999999999988775444
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=5e-21 Score=186.77 Aligned_cols=162 Identities=24% Similarity=0.334 Sum_probs=143.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
...||||+||+..++++.|+++|-+.|+|..++ ++..++|||||+|.++|+|+-|++-|+...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 457999999999999999999999999999997 466799999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEE------EeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i------ri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i 339 (823)
. .........+|||+||++.+++..|.++|+.||.+... ..++.++++|||.|.+.+.+.+|+..+||..+
T Consensus 88 ~---~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l 164 (203)
T KOG0131|consen 88 A---HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYL 164 (203)
T ss_pred c---ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchh
Confidence 1 11222234799999999999999999999999988763 24678899999999999999999999999999
Q ss_pred CCceEEEEecCCCccc
Q 003400 340 AGKRIKLEPSRPGGAR 355 (823)
Q Consensus 340 ~Gr~I~V~~s~~~~~r 355 (823)
..++|+|.++..++.+
T Consensus 165 ~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 165 CNRPITVSYAFKKDTK 180 (203)
T ss_pred cCCceEEEEEEecCCC
Confidence 9999999999876644
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=7e-21 Score=196.92 Aligned_cols=148 Identities=28% Similarity=0.462 Sum_probs=137.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 272 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 272 (823)
-+|||+|||.++++.+|+.+|++||+|.+|.+ -|.||||..++...|+.|++.|++..|.|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 47999999999999999999999999999986 45799999999999999999999999999999999886553
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
....+|+|+||.+.++.+||+..|++||.|++|+|. ++|+||.|+-.++|..|++.|++.++.|++++|..+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 245689999999999999999999999999999986 689999999999999999999999999999999998764
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.5e-20 Score=207.42 Aligned_cols=276 Identities=22% Similarity=0.348 Sum_probs=215.4
Q ss_pred cccceeecCCcccccccCCCceeeccCCccccccccccccCCCCCcccccCCCccccCCCCCCCCCcccccCCCCCCCCC
Q 003400 24 GGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLP 103 (823)
Q Consensus 24 ~~~t~~~p~~a~~~~~~~d~~~fs~~l~~l~~~k~~~~~~~~~~~~~d~~~~~~kk~~~eee~~k~~ee~e~~~i~n~LP 103 (823)
|-..|.-|++|-+|+.+++-.++.|+..-|..+... .+ +
T Consensus 40 ~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd-------------~~--~-------------------------- 78 (369)
T KOG0123|consen 40 AYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD-------------PS--L-------------------------- 78 (369)
T ss_pred EEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-------------Cc--e--------------------------
Confidence 446677788888888888888777776655552211 01 0
Q ss_pred cchhHhhhcCccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCC
Q 003400 104 DDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPN 176 (823)
Q Consensus 104 ~d~d~l~~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n 176 (823)
++|.+|+.+++...++|+|+.+|.| .|..+..- .+|+ +|.|.+...|. .+++..+.+
T Consensus 79 -------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 79 -------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNG 142 (369)
T ss_pred -------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCC
Confidence 8999999999999999999999997 66555433 7888 99999887665 333333333
Q ss_pred CCccc-------cCCCCCCC--CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHH
Q 003400 177 GAGTV-------AGEHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAAR 243 (823)
Q Consensus 177 ~~~~~-------~~~~~~~e--~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~ 243 (823)
....+ ....+..+ ...+.++|+|++.++++++|.++|..||.|.++.+ .+++++|+||.|.+.++|.
T Consensus 143 kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 143 KKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred CeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHH
Confidence 21111 11111222 23468999999999999999999999999999873 5668999999999999999
Q ss_pred HHHHHhcCCccccccccccccCCCCCCC--------------CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe
Q 003400 244 TAMRALQNKPLRRRKLDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (823)
Q Consensus 244 ~Ai~~Lng~~l~gr~L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri 309 (823)
.|+..|++..+.+..+.|..+..+.... .......+|||.||+..++.+.|+++|+.||+|..+++
T Consensus 223 ~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv 302 (369)
T KOG0123|consen 223 KAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKV 302 (369)
T ss_pred HHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEE
Confidence 9999999999999999988775532111 11234569999999999999999999999999999876
Q ss_pred ----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccc
Q 003400 310 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (823)
Q Consensus 310 ----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~ 356 (823)
.+.++|++||+|...++|.+|+..+|+..+.++.|.|.++.....++
T Consensus 303 ~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 303 MVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred EeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 46789999999999999999999999999999999999988655444
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=8.9e-20 Score=201.41 Aligned_cols=161 Identities=22% Similarity=0.368 Sum_probs=143.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
.||||++||++++.++|.++|+.+|+|..|.+ ...++||+||.|.-.+++++|+..+.+..|.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999873 3468999999999999999999999999999999999998665
Q ss_pred CCCCC--------------------C--CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEE
Q 003400 268 DNPSD--------------------K--DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 321 (823)
Q Consensus 268 ~~~~~--------------------~--~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF 321 (823)
..... . +.....|.|+|||+.+...+|+.+|+.||.|.+|.|. ++-+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43220 0 1124589999999999999999999999999999873 44579999999
Q ss_pred cCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 322 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 322 ~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
.+..+|.+|++.+||..|+||+|-|.||-++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999998765
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.80 E-value=1.8e-19 Score=204.99 Aligned_cols=161 Identities=25% Similarity=0.459 Sum_probs=139.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCC--------CcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC--------KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~--------ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
+|||+||+.++|.++|..+|...|.|.++.+.. .+.|||||+|.+.++|+.|++.|+|+.|.|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 499999999999999999999999999996421 245999999999999999999999999999999999986
Q ss_pred CCCCC-----CCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCC-----cccEEEEEEcCHHHHHHHHHHhC
Q 003400 266 PKDNP-----SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALKSLN 335 (823)
Q Consensus 266 pk~~~-----~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~-----srG~aFVeF~d~e~A~kAl~~Ln 335 (823)
.+... .......+.|.|+|||+..+-.+++++|..||.|++||+..+ .+|||||+|-++++|..|+++|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 11110 011112358999999999999999999999999999998543 48999999999999999999999
Q ss_pred CCccCCceEEEEecCCCcc
Q 003400 336 RSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 336 G~~i~Gr~I~V~~s~~~~~ 354 (823)
.+.+.||+|.++|+.....
T Consensus 677 STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred ccceechhhheehhccchH
Confidence 9999999999999987654
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=3e-18 Score=176.12 Aligned_cols=161 Identities=24% Similarity=0.371 Sum_probs=130.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
+..-|||||+||..+|||+-|..||.+.|.|..+++... .|+|.|+....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh------------------------------hhccccccCcc
Confidence 345699999999999999999999999999999875322 55677765443
Q ss_pred CCCCCCCC-ccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003400 269 NPSDKDLN-QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (823)
Q Consensus 269 ~~~~~~~~-~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (823)
..+..... .--+||+.|...++.|+|++.|.+||+|.++|+ ++++||||||.|.+.++|+.||..|||.+|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 33332222 346999999999999999999999999999876 678999999999999999999999999999999
Q ss_pred eEEEEecCCCccc--------------------chhhhccccccCHHHHHHHHhhcC
Q 003400 343 RIKLEPSRPGGAR--------------------RNLMLQLNQELEQDESRILQHQVG 379 (823)
Q Consensus 343 ~I~V~~s~~~~~r--------------------~~~~~ql~~~~~~~~l~~~f~~~G 379 (823)
.|+-.|+.++... ..|+..++..++++.+++.|.+||
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 9999999876532 124455555677778888777776
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6e-18 Score=179.01 Aligned_cols=156 Identities=22% Similarity=0.473 Sum_probs=137.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
-++|||+.|...+.|+.||..|..||+|++|. ++.+++|||||+|+-+|.|+.|++.+||..+.||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 47999999999999999999999999999997 5899999999999999999999999999999999999984 3
Q ss_pred CCCCCCC---------CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003400 267 KDNPSDK---------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 332 (823)
Q Consensus 267 k~~~~~~---------~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~ 332 (823)
...+... ...-.+|||..+.++++++||+.+|+.||+|.+|.+ ....+||+||||.+...-.+||.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 3222111 112358999999999999999999999999999976 34568999999999999999999
Q ss_pred HhCCCccCCceEEEEec
Q 003400 333 SLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s 349 (823)
.||-..++|.-|+|..+
T Consensus 271 sMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hcchhhcccceEecccc
Confidence 99999999999998655
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.3e-17 Score=184.58 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=127.3
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 186 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~ 186 (823)
.++|+|++||.+++|.+|+++|+.+|.| .|..|..+...+++++|.|.+.+.|. .++...+.+...++....+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 5889999999999999999999999987 66677788889999999999876654 4555556555555544333
Q ss_pred C-CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccc--cc
Q 003400 187 Y-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 258 (823)
Q Consensus 187 ~-~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g--r~ 258 (823)
. .....++|||+|||.++|+++|+++|++||+|+.|++ +++++|||||+|.+.++|++|++.|++..+.+ ++
T Consensus 187 ~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~ 266 (346)
T TIGR01659 187 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQP 266 (346)
T ss_pred cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 2 2234678999999999999999999999999998873 56778999999999999999999999998865 68
Q ss_pred ccccccCC
Q 003400 259 LDIHFSIP 266 (823)
Q Consensus 259 L~V~~a~p 266 (823)
|.|.++..
T Consensus 267 l~V~~a~~ 274 (346)
T TIGR01659 267 LTVRLAEE 274 (346)
T ss_pred EEEEECCc
Confidence 88888764
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.73 E-value=5.7e-17 Score=164.27 Aligned_cols=162 Identities=27% Similarity=0.457 Sum_probs=142.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HhhcCCCEEEEE--eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRA----LFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~----lFs~fG~I~~v~--~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
..+..||||+||+..+..++|+. +|++||.|..|. .+.+.+|-|||.|.+.+.|-.|+++|+|..+.|++++|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34667999999999999999988 999999999987 377899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC----------------------------------------------CCCccceeeecCCCCCCHHHHHH
Q 003400 263 FSIPKDNPSDK----------------------------------------------DLNQGTLVVFNLDPSVSNEDLRQ 296 (823)
Q Consensus 263 ~a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~~vteedL~~ 296 (823)
||..+.+...+ ......|++.|||.+++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 98654321100 12335799999999999999999
Q ss_pred HhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecC
Q 003400 297 IFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSR 350 (823)
Q Consensus 297 ~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~ 350 (823)
+|.+|...++||......+.|||+|.+...|..|...|+|..|. ...++|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988778899999999999999999999999887 7888888875
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=6.7e-18 Score=172.74 Aligned_cols=166 Identities=23% Similarity=0.430 Sum_probs=138.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcc-cc--ccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL-RR--RKLDIHF 263 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l-~g--r~L~V~~ 263 (823)
+.|+|||+-|.+.-.|||++.+|..||.|.+|.+ .+.+||||||.|.+.-+|..||..|+|... .| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5689999999999999999999999999999974 577999999999999999999999998653 22 2344444
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 003400 264 SIPKDNPS------------------------------------------------------------------------ 271 (823)
Q Consensus 264 a~pk~~~~------------------------------------------------------------------------ 271 (823)
+...+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 32111000
Q ss_pred --------------------------------------------------------------------------------
Q 003400 272 -------------------------------------------------------------------------------- 271 (823)
Q Consensus 272 -------------------------------------------------------------------------------- 271 (823)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCH
Q 003400 272 ----------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 324 (823)
Q Consensus 272 ----------------------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~ 324 (823)
.+..+.++|||..||.+..+.||.++|-+||.|++.++ +..+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00012268999999999999999999999999998754 678999999999999
Q ss_pred HHHHHHHHHhCCCccCCceEEEEecCCCcccc
Q 003400 325 RAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (823)
Q Consensus 325 e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~ 356 (823)
.+|+.||.+|||..|+-|+|+|...+|++..|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999987655
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=1.1e-16 Score=178.56 Aligned_cols=237 Identities=19% Similarity=0.239 Sum_probs=179.1
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc---cccccccCCCCcccc-----
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVA----- 182 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~---~~~~~~l~n~~~~~~----- 182 (823)
...+++-.|......-+++++|+..|.| .+..|..+.+.+|++++.|.+...+. .+.+-.+..-...+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHH
Confidence 4567777777888899999999999986 67788889999999999999875443 222222221111110
Q ss_pred ----------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHH
Q 003400 183 ----------GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 247 (823)
Q Consensus 183 ----------~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~ 247 (823)
........|-+.|||+||-.++++++|+.+|+.||.|..|.+ ++.++||+||+|.+.++|++|+.
T Consensus 259 knr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 259 KNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALE 338 (549)
T ss_pred HHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHH
Confidence 000111334455999999999999999999999999999872 78899999999999999999999
Q ss_pred HhcCCccccccccccccCCCCCCCC-------------------------------------------------------
Q 003400 248 ALQNKPLRRRKLDIHFSIPKDNPSD------------------------------------------------------- 272 (823)
Q Consensus 248 ~Lng~~l~gr~L~V~~a~pk~~~~~------------------------------------------------------- 272 (823)
.|||..|.|+.|+|.....+-....
T Consensus 339 ~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~ 418 (549)
T KOG0147|consen 339 QLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASA 418 (549)
T ss_pred HhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchH
Confidence 9999999999998765321100000
Q ss_pred -------------CC-------CCccceeeecCC--CCCC--------HHHHHHHhcccCceEEEEeCCCcccEEEEEEc
Q 003400 273 -------------KD-------LNQGTLVVFNLD--PSVS--------NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 322 (823)
Q Consensus 273 -------------~~-------~~~~tLfV~NLp--~~vt--------eedL~~~Fs~fG~I~~iri~~~srG~aFVeF~ 322 (823)
.. +...++.++|+= .+.| .+|+.+.+.+||.|..|.+...+-|+.||.|.
T Consensus 419 ~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~ 498 (549)
T KOG0147|consen 419 AQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCP 498 (549)
T ss_pred HhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecC
Confidence 00 111245555552 2222 27788999999999999998888899999999
Q ss_pred CHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 323 DVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 323 d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
+.++|..|+++|||.+|.|+.|+..|-.
T Consensus 499 s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 499 SAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred cHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 9999999999999999999999998854
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.67 E-value=4.7e-14 Score=152.81 Aligned_cols=159 Identities=23% Similarity=0.379 Sum_probs=131.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhh-cCCCEEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFE-QYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
.|.+||.|||+++...+|++||. +.|+|+.|. ..++.+|||.|+|+++|.+++|++.|+...+.|++|.|+--..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46799999999999999999997 789999997 3789999999999999999999999999999999998864211
Q ss_pred CCC------------------------------------------CCCC-------------------------------
Q 003400 267 KDN------------------------------------------PSDK------------------------------- 273 (823)
Q Consensus 267 k~~------------------------------------------~~~~------------------------------- 273 (823)
... +.++
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 0000
Q ss_pred --------CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003400 274 --------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (823)
Q Consensus 274 --------~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (823)
......+||.||.+.+....|++.|.--|.|..|.+ .+.++|++.|+|+.+-+|..||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 001147899999999999999999999999988853 46789999999999999999999999877777
Q ss_pred ceEEEEecC
Q 003400 342 KRIKLEPSR 350 (823)
Q Consensus 342 r~I~V~~s~ 350 (823)
++..+...+
T Consensus 284 ~~~~~Rl~~ 292 (608)
T KOG4212|consen 284 RRMTVRLDR 292 (608)
T ss_pred ccceeeccc
Confidence 887777643
No 40
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=9.6e-16 Score=162.46 Aligned_cols=239 Identities=14% Similarity=0.262 Sum_probs=179.9
Q ss_pred hcCccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccC
Q 003400 111 AGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAG 183 (823)
Q Consensus 111 ~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~ 183 (823)
-.+|+++||+.+..++.|+.++..|..||.| ...-|+.+...++|+|+.+.-.+.+. .+++..+.++..++..
T Consensus 110 LaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 110 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3569999999999999999999999999997 45678889999999999887655443 3444444333333321
Q ss_pred CC------C------CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHH
Q 003400 184 EH------P------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAM 246 (823)
Q Consensus 184 ~~------~------~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai 246 (823)
.. + ...+.-.+|||..+.++.+|+||+.+|+.||+|..|.+ ...++||+||+|.+..+...|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 11 1 01223579999999999999999999999999999983 5679999999999999999999
Q ss_pred HHhcCCccccccccccccCCCCCC--------------------------------------------------------
Q 003400 247 RALQNKPLRRRKLDIHFSIPKDNP-------------------------------------------------------- 270 (823)
Q Consensus 247 ~~Lng~~l~gr~L~V~~a~pk~~~-------------------------------------------------------- 270 (823)
..+|-..+.|+-|+|..+......
T Consensus 270 asMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~ 349 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPL 349 (544)
T ss_pred hhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCC
Confidence 999988888887776542110000
Q ss_pred ---------------------------C-------------------------CC-------------------------
Q 003400 271 ---------------------------S-------------------------DK------------------------- 273 (823)
Q Consensus 271 ---------------------------~-------------------------~~------------------------- 273 (823)
. .+
T Consensus 350 ~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G 429 (544)
T KOG0124|consen 350 GTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISG 429 (544)
T ss_pred CCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccC
Confidence 0 00
Q ss_pred -------------CCCccceeeecC--CCCCC---HHHHHHHhcccCceEEEEeCCCccc---------EEEEEEcCHHH
Q 003400 274 -------------DLNQGTLVVFNL--DPSVS---NEDLRQIFGAYGEVKEIRETPHKRH---------HKFIEFYDVRA 326 (823)
Q Consensus 274 -------------~~~~~tLfV~NL--p~~vt---eedL~~~Fs~fG~I~~iri~~~srG---------~aFVeF~d~e~ 326 (823)
....+.+.++|+ |.+++ +.+|.+.+++||.|.+|.+.....+ .-||+|....+
T Consensus 430 ~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e 509 (544)
T KOG0124|consen 430 SSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASE 509 (544)
T ss_pred ccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhH
Confidence 001135677787 45554 4688999999999999876433222 36999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEec
Q 003400 327 AEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 327 A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
+.+|+.+|+|+.++|+++..+..
T Consensus 510 ~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 510 THRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHHhhccceecCceeehhhh
Confidence 99999999999999999986653
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=3.8e-15 Score=160.52 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=169.8
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE------------EEeccCccCcccceeEeeecCccccc--ccccc--------
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSASGN--GLLHY-------- 172 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v------------~V~~d~~es~~~g~~~v~~~e~~~a~--~~~~~-------- 172 (823)
.-+.+++||++++|.|+++++..||.| +|++.+.+++..-...++-....... -+..|
T Consensus 29 kV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~lkt 108 (492)
T KOG1190|consen 29 KVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSELKT 108 (492)
T ss_pred ceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHHHhc
Confidence 568899999999999999999999987 66666666554311111100000000 00000
Q ss_pred -ccCC-------------C---CccccC--CCC-CCCCCC--cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCccc
Q 003400 173 -SVPN-------------G---AGTVAG--EHP-YGEHPS--RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRG 230 (823)
Q Consensus 173 -~l~n-------------~---~~~~~~--~~~-~~e~~s--rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG 230 (823)
...+ . +..... ... ....++ -+++|.|+-.-|+-+-|..+|++||.|..|.+..|..+
T Consensus 109 ~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~ 188 (492)
T KOG1190|consen 109 DSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG 188 (492)
T ss_pred cCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc
Confidence 0000 0 000000 000 111223 35688999999999999999999999999988888888
Q ss_pred E-EEEEeCCHHHHHHHHHHhcCCcccc--ccccccccC----------CCCCC-------CC------------------
Q 003400 231 F-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI----------PKDNP-------SD------------------ 272 (823)
Q Consensus 231 ~-AFV~F~~~e~A~~Ai~~Lng~~l~g--r~L~V~~a~----------pk~~~-------~~------------------ 272 (823)
| |+|+|.|.+.|..|..+|+|..|.+ +.|+|.|+. .+.+. ..
T Consensus 189 FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~ 268 (492)
T KOG1190|consen 189 FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVP 268 (492)
T ss_pred hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccc
Confidence 7 9999999999999999999988753 456665542 11100 00
Q ss_pred ----------------------CCC--CccceeeecCCC-CCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHH
Q 003400 273 ----------------------KDL--NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAA 327 (823)
Q Consensus 273 ----------------------~~~--~~~tLfV~NLp~-~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A 327 (823)
-.. ....|.|.||.. .+|.+.|..+|+.||+|.+|++.-+++..|.|+|.|...|
T Consensus 269 ~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qA 348 (492)
T KOG1190|consen 269 AVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQA 348 (492)
T ss_pred cccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHH
Confidence 000 024678888865 5899999999999999999998777778999999999999
Q ss_pred HHHHHHhCCCccCCceEEEEecCCCc
Q 003400 328 EAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 328 ~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
+-|+..|+|..+.||+|+|.+++...
T Consensus 349 qLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 349 QLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred HHHHHHhhcceecCceEEEeeccCcc
Confidence 99999999999999999999998754
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.1e-15 Score=147.54 Aligned_cols=149 Identities=22% Similarity=0.329 Sum_probs=127.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCC--cccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k--srG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
+.+++|||+|||.++-+.||+++|-+||.|..|.+..+ ...||||+|++..+|+.||..-+|..+.|..|+|+|+..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 46799999999999999999999999999999986444 3479999999999999999999999999999999997543
Q ss_pred CCCCC----------------------CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHH
Q 003400 268 DNPSD----------------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 325 (823)
Q Consensus 268 ~~~~~----------------------~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e 325 (823)
..... ....+..+.|.+||.+-+++||+++..+-|.|....+.. .|++.|+|...+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--Dg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--DGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--ccceeeeeeehh
Confidence 21110 111234899999999999999999999999999888753 568999999999
Q ss_pred HHHHHHHHhCCCccC
Q 003400 326 AAEAALKSLNRSDIA 340 (823)
Q Consensus 326 ~A~kAl~~LnG~~i~ 340 (823)
+.+-|++.|....+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999877654
No 43
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.62 E-value=2.8e-16 Score=175.22 Aligned_cols=163 Identities=23% Similarity=0.357 Sum_probs=139.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
..++..||+|+--|+..++..+|.++|+.+|.|..|.+ +.+++|.|||+|.|.+....|+. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 35667799999999999999999999999999999873 56799999999999999999996 9999999999999
Q ss_pred cccCCCCCCCC----------CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHH
Q 003400 262 HFSIPKDNPSD----------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRA 326 (823)
Q Consensus 262 ~~a~pk~~~~~----------~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~ 326 (823)
+.....++... -..+-..|||+||...+++++|+.+|++||.|..|.. ++.++|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 87543322110 0111123999999999999999999999999999853 78899999999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecC
Q 003400 327 AEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 327 A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
|.+|+..|||.+|.|+.|+|....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHHhccceecCceEEEEEee
Confidence 999999999999999999987653
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.59 E-value=2.4e-15 Score=162.80 Aligned_cols=161 Identities=19% Similarity=0.402 Sum_probs=140.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..++|||++|+++++++.|++.|.+||+|..|.+ +++++||+||+|.+.+...+++.. ....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 6789999999999999999999999999999873 678999999999999999998873 5677999999999998
Q ss_pred CCCCCCCCCC--CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 003400 266 PKDNPSDKDL--NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (823)
Q Consensus 266 pk~~~~~~~~--~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (823)
+......... ...++||++|+.+++++++++.|.+||.|..+.+ +...++|+||.|++++.+.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8765443222 3568999999999999999999999998877743 45679999999999999999887 56789
Q ss_pred cCCceEEEEecCCCc
Q 003400 339 IAGKRIKLEPSRPGG 353 (823)
Q Consensus 339 i~Gr~I~V~~s~~~~ 353 (823)
|.|+.+.|..|.++.
T Consensus 163 ~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKE 177 (311)
T ss_pred ecCceeeEeeccchh
Confidence 999999999998875
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.49 E-value=8.4e-13 Score=142.63 Aligned_cols=161 Identities=25% Similarity=0.336 Sum_probs=137.4
Q ss_pred CcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCC
Q 003400 192 SRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 270 (823)
Q Consensus 192 srtLfV~NLP~~-vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~ 270 (823)
+..|.|.||... +|.+.|..+|.-||+|.+|++....+--|+|+|.|...|+.|++.|+|..+.|++|+|.+++.....
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 578899999755 8999999999999999999987777789999999999999999999999999999999998643211
Q ss_pred CCC-------------------------------CCCccceeeecCCCCCCHHHHHHHhcccCce-EEEEeCCCcccEEE
Q 003400 271 SDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKF 318 (823)
Q Consensus 271 ~~~-------------------------------~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I-~~iri~~~srG~aF 318 (823)
..+ .....+|.+.|+|.+++||+|+..|..-|.. +-.+..++.+.+|.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 100 0123589999999999999999999988755 55677777888999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCC-ceEEEEecCCC
Q 003400 319 IEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRPG 352 (823)
Q Consensus 319 VeF~d~e~A~kAl~~LnG~~i~G-r~I~V~~s~~~ 352 (823)
+++.++|+|..|+..++.+.+++ ..|+|.|++..
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999886 59999998753
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=5.7e-14 Score=146.09 Aligned_cols=145 Identities=21% Similarity=0.339 Sum_probs=118.2
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE-EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYG 188 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v-~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~~~ 188 (823)
+.++||++||...++.+++.||+++|.| +.. ..+.+.||++.+...+. .+.+|.+.+..+++...+. +
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECD------IvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks-K 74 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECD------IVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS-K 74 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeee------eecccceEEeecccccHHHHhhcccceecceEEEEEeccc-c
Confidence 4689999999999999999999999987 221 12345666666554433 3567777666655554433 3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
...+++|+|+||.+.++.+||+..|++||.|..|++ -++|+||.|.-.++|..|++.|++++|+|++++|+.+..+-
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 567899999999999999999999999999999976 56899999999999999999999999999999999986543
No 47
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.46 E-value=3.6e-13 Score=135.51 Aligned_cols=150 Identities=20% Similarity=0.335 Sum_probs=116.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCc----ccEEEEEeCCHHHHHHHHHHhcCCccc---cccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKH----RGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 261 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~--~~~ks----rG~AFV~F~~~e~A~~Ai~~Lng~~l~---gr~L~V 261 (823)
.-|||||.+||.++...||..+|..|--.+.+. .+.+. +.+|||.|.+.++|..|+.+|||.+|. +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 359999999999999999999999986655543 33333 379999999999999999999999985 677888
Q ss_pred cccCCCCCCCC----------------------C-C-------------------------C------------------
Q 003400 262 HFSIPKDNPSD----------------------K-D-------------------------L------------------ 275 (823)
Q Consensus 262 ~~a~pk~~~~~----------------------~-~-------------------------~------------------ 275 (823)
++++......+ . . .
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 77642110000 0 0 0
Q ss_pred ----------------CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCC-CcccEEEEEEcCHHHHHHHHHHhCCCc
Q 003400 276 ----------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDVRAAEAALKSLNRSD 338 (823)
Q Consensus 276 ----------------~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~-~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (823)
.-.||||-||..+++|++|+++|+.|-....+++.. .....||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 003899999999999999999999997655555532 234589999999999999999999887
Q ss_pred cC
Q 003400 339 IA 340 (823)
Q Consensus 339 i~ 340 (823)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 63
No 48
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=8.4e-14 Score=142.60 Aligned_cols=150 Identities=26% Similarity=0.431 Sum_probs=129.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC---
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN--- 269 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~--- 269 (823)
..+||++||+.+.+.+|..+|..||.|..|.+ ..||+||+|.+..+|..|+..|++..|.+..+.|+|+.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999999865 357899999999999999999999999998899999874210
Q ss_pred ---CC----------CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC
Q 003400 270 ---PS----------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 336 (823)
Q Consensus 270 ---~~----------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG 336 (823)
.. .-......|+|.|+...+.+.+|.++|.++|.+..... ..+++||+|...++|.+|+..|+|
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 00 00123457899999999999999999999999955544 578999999999999999999999
Q ss_pred CccCCceEEEEe
Q 003400 337 SDIAGKRIKLEP 348 (823)
Q Consensus 337 ~~i~Gr~I~V~~ 348 (823)
..+.++.|++..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999943
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.42 E-value=7.3e-13 Score=129.57 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=71.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+||+.++++++|+++|++||.|++|++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4568999999999999999999999999999876 45679999999999999999999999999999999999987
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 643
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=9.4e-13 Score=128.79 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...+++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 446789999999999999999999999999999874 567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.36 E-value=2.2e-11 Score=130.33 Aligned_cols=232 Identities=19% Similarity=0.279 Sum_probs=170.2
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE------------EEeccCccCcccceeEeeecCcc---ccc--cccccccCCC
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSA---SGN--GLLHYSVPNG 177 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v------------~V~~d~~es~~~g~~~v~~~e~~---~a~--~~~~~~l~n~ 177 (823)
--+.|++|-..+.|.++.+..+.||.| .|+|++.+++... ++|.... .+. .+.+|....
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~---Vnfaa~n~i~i~gq~Al~NyStsq- 107 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNC---VNFAADNQIYIAGQQALFNYSTSQ- 107 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhh---eehhccCcccccCchhhcccchhh-
Confidence 457899999999999999999999987 3444444433211 1111110 000 111111111
Q ss_pred CccccCCCCCCCCCCcEEEEcCCC--CCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccc
Q 003400 178 AGTVAGEHPYGEHPSRTLFVRNIN--SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (823)
Q Consensus 178 ~~~~~~~~~~~e~~srtLfV~NLP--~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~ 255 (823)
.+.........++..|.+.=|. ..+|.+-|..+....|+|.+|.+..+..-.|+|+|++.+.|++|..+|||..|.
T Consensus 108 --~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 108 --CIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred --hhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccccc
Confidence 1111122334456677666554 568999999999999999999988887778999999999999999999999885
Q ss_pred --cccccccccCCCCCCCC-------------------------------------------------------------
Q 003400 256 --RRKLDIHFSIPKDNPSD------------------------------------------------------------- 272 (823)
Q Consensus 256 --gr~L~V~~a~pk~~~~~------------------------------------------------------------- 272 (823)
-.+|+|+|++|.+....
T Consensus 186 sGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P 265 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPP 265 (494)
T ss_pred ccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCC
Confidence 46899999876421000
Q ss_pred -------CC----------CCccceeeecCCCC-CCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHh
Q 003400 273 -------KD----------LNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 334 (823)
Q Consensus 273 -------~~----------~~~~tLfV~NLp~~-vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~L 334 (823)
.+ .....+.|.+|+.. +.-+.|..+|..||.|.+|++...+.|-|.||+.|..+.++|+..|
T Consensus 266 ~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hL 345 (494)
T KOG1456|consen 266 SRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHL 345 (494)
T ss_pred CCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHh
Confidence 00 00136888999864 6788999999999999999998888899999999999999999999
Q ss_pred CCCccCCceEEEEecCCC
Q 003400 335 NRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 335 nG~~i~Gr~I~V~~s~~~ 352 (823)
|+..+-|.+|.|.+++..
T Consensus 346 nn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 346 NNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred ccCccccceEEEeecccc
Confidence 999999999999998643
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.35 E-value=1.3e-11 Score=131.59 Aligned_cols=163 Identities=15% Similarity=0.252 Sum_probs=132.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--------EE----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--------v~----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr 257 (823)
.-++.|||.|||.++|.+++.++|++||-|.. |+ ..++-+|=|.+.|...+++..|+..|++..|+|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34567999999999999999999999998765 22 2567889999999999999999999999999999
Q ss_pred cccccccCCCCCC----------------------------------CCCCCCccceeeecCCC----CCC-------HH
Q 003400 258 KLDIHFSIPKDNP----------------------------------SDKDLNQGTLVVFNLDP----SVS-------NE 292 (823)
Q Consensus 258 ~L~V~~a~pk~~~----------------------------------~~~~~~~~tLfV~NLp~----~vt-------ee 292 (823)
.|+|+.|.-.... ..+....++|.|+|+=. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9999876421100 00111236899998832 222 46
Q ss_pred HHHHHhcccCceEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 293 DLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 293 dL~~~Fs~fG~I~~iri-~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
+|++-+.+||.|.+|.+ ..++.|.+-|.|.+.++|..||+.|+|+.++||+|..+...-+
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 77888999999999976 4567899999999999999999999999999999998876554
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.31 E-value=5.1e-11 Score=129.56 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=64.5
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
++|+|+|||.+.|++.|++-|..||.|..+.| .++++ +.|+|.++++|++|+..|||..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 48999999999999999999999999999887 55555 499999999999999999999999999999873
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=1.1e-11 Score=104.44 Aligned_cols=66 Identities=36% Similarity=0.634 Sum_probs=61.5
Q ss_pred eeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 280 LfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
|||+|||.++|+++|+++|++||.|..+++. +..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999988653 45789999999999999999999999999999985
No 55
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=7.1e-12 Score=122.50 Aligned_cols=77 Identities=30% Similarity=0.475 Sum_probs=72.8
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
.++|||+||+..+++.||+.+|..||.|..|.+.....|||||||+|+.+|+.|+..|+|+.|.|..|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 56899999999999999999999999999999887889999999999999999999999999999999999987543
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.25 E-value=1.2e-11 Score=104.15 Aligned_cols=66 Identities=29% Similarity=0.603 Sum_probs=61.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 195 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 195 LfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
|||+|||.++|+++|+++|++||.|..+.+ .++.+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999998874 356889999999999999999999999999998874
No 57
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.1e-11 Score=121.32 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
-.++|||+||+..+++.||+.+|..||.|.+|++.....|||||+|+++.+|+.|+..|+|+.|.|..|.|+.+.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 36899999999999999999999999999999999899999999999999999999999999999999999987543
No 58
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=1.3e-10 Score=131.93 Aligned_cols=162 Identities=17% Similarity=0.355 Sum_probs=126.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.....+||++||..+++.+++++.+.||.+.... .++-++||||.+|.+......|+..|+|..+.+++|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3457899999999999999999999999988765 24679999999999999999999999999999999999887
Q ss_pred CCCCCCCCC--------------------CCCccceeeecCC--CCC-CH-------HHHHHHhcccCceEEEEeCC---
Q 003400 265 IPKDNPSDK--------------------DLNQGTLVVFNLD--PSV-SN-------EDLRQIFGAYGEVKEIRETP--- 311 (823)
Q Consensus 265 ~pk~~~~~~--------------------~~~~~tLfV~NLp--~~v-te-------edL~~~Fs~fG~I~~iri~~--- 311 (823)
......... ......|.+.|+- .++ .+ |+++..+.+||.|..|.+..
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 543221110 1111233333331 111 11 55677788999999997632
Q ss_pred -----CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 312 -----HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 312 -----~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
...|..||+|.+.+++++|..+|+|.++.|+.|...|...
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 1357799999999999999999999999999999988754
No 59
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.19 E-value=6e-11 Score=128.79 Aligned_cols=157 Identities=13% Similarity=0.231 Sum_probs=123.1
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc---cccccccCCCCccccCCC--
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVAGEH-- 185 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~---~~~~~~l~n~~~~~~~~~-- 185 (823)
.++++|++|.++.+++.|.+.|+++|.| .|+.|....+.+++.+++|.+..... ......+.........+.
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 4789999999999999999999999987 78888889999999999999554332 112222333322211111
Q ss_pred -----CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccc
Q 003400 186 -----PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (823)
Q Consensus 186 -----~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~ 255 (823)
........+|||++||.+++++++++.|++||.|..+. .+.+.+||+||.|.+.+.+++++. ...+.|.
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~ 164 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN 164 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec
Confidence 11222356999999999999999999999999888775 367789999999999999999988 5778899
Q ss_pred cccccccccCCCCCCC
Q 003400 256 RRKLDIHFSIPKDNPS 271 (823)
Q Consensus 256 gr~L~V~~a~pk~~~~ 271 (823)
++.+.|..|.|++...
T Consensus 165 gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQ 180 (311)
T ss_pred CceeeEeeccchhhcc
Confidence 9999999999876543
No 60
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=120.54 Aligned_cols=119 Identities=27% Similarity=0.444 Sum_probs=101.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
.++|||+|||.++++++|+++|.+||.|..+.+ +++++|||||+|.+.++|..|+..+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999987762 578999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC
Q 003400 267 ----KDNPS----------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 310 (823)
Q Consensus 267 ----k~~~~----------------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~ 310 (823)
..... ........+++.+++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 22111 011223589999999999999999999999999777653
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=3.5e-11 Score=118.38 Aligned_cols=155 Identities=16% Similarity=0.260 Sum_probs=124.7
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccC--CC
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAG--EH 185 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~--~~ 185 (823)
.++||++|+..+.+..++++|-+.|.| .+..|.......|++|+.|...+.+. -++...+-+..+++.. ..
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 579999999999999999999999986 55666677778899999998877665 3333444455443322 22
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE---E---eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL---Y---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v---~---~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L 259 (823)
...-....+|||+||.+.++|..|.++|+.||.+... - .++..+|||||.|.+.+.+.+|+..++|..+..+++
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 2233455899999999999999999999999987652 1 367889999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 003400 260 DIHFSIPKDN 269 (823)
Q Consensus 260 ~V~~a~pk~~ 269 (823)
.|.|+..+..
T Consensus 170 tv~ya~k~~~ 179 (203)
T KOG0131|consen 170 TVSYAFKKDT 179 (203)
T ss_pred EEEEEEecCC
Confidence 9999875543
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=2.4e-10 Score=126.85 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=121.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE---eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~---~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
.-.|-+++||+++|++||.++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..+-|.|--+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 35677899999999999999999986 55554 467889999999999999999999 47777777777776554332
Q ss_pred CC-------CCCCCCccceeeecCCCCCCHHHHHHHhcccCceEE-EEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 003400 269 NP-------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (823)
Q Consensus 269 ~~-------~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~-iri----~~~srG~aFVeF~d~e~A~kAl~~LnG 336 (823)
.. .........|.+++||+.+|++||.++|+..-.|.. |-+ .+++.|-|||+|++.+.|++|+.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 21 111235568999999999999999999997654444 211 345678899999999999999984 56
Q ss_pred CccCCceEEEEecCC
Q 003400 337 SDIAGKRIKLEPSRP 351 (823)
Q Consensus 337 ~~i~Gr~I~V~~s~~ 351 (823)
..|.-+-|.|-.+..
T Consensus 167 e~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSSR 181 (510)
T ss_pred HhhccceEEeehhHH
Confidence 677777788766543
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=7.9e-11 Score=124.78 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=80.3
Q ss_pred cCCccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe---CCCcccEEEEEEcCHHH
Q 003400 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRA 326 (823)
Q Consensus 250 ng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri---~~~srG~aFVeF~d~e~ 326 (823)
++....|..+.+..+.. +......++|+|+|||+...+-||+.+|++||+|.+|.| ...+||||||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 44455566655543321 112223468999999999999999999999999999976 34589999999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecCCC
Q 003400 327 AEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 327 A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
|++|..+|||..|.||+|+|..+..+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999988764
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.2e-10 Score=119.34 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|.|.||+.++++++|+++|.+||.|..|. .++.++|||||.|.++++|++||..|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 457899999999999999999999999999884 488899999999999999999999999999999999999999
Q ss_pred CC
Q 003400 351 PG 352 (823)
Q Consensus 351 ~~ 352 (823)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 65
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=5.5e-11 Score=133.73 Aligned_cols=163 Identities=27% Similarity=0.403 Sum_probs=132.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
...+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|+++|++|+++|++.++.|+.|+.......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35678999999999999999999999999999999988889999999999999999999999999999998883322110
Q ss_pred CC------------------CCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHH
Q 003400 268 DN------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEA 329 (823)
Q Consensus 268 ~~------------------~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~k 329 (823)
.. .....-.+..+++- |++..+...++.+|..+|.+.. +.++.....-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 00 00111123455555 9999999889999999999988 8888777789999999999977
Q ss_pred HHHHhCCCccCCceEEEEecCCCc
Q 003400 330 ALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 330 Al~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
++... |..+.++...+.++.+.+
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred cccCC-ceecCCCCceEEecCCCc
Confidence 77744 778888887788887744
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.6e-10 Score=118.48 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
+++.+|-|.||+.+++|++|++||.+||.|.+|+ .++.++|||||.|++.++|.+||+.|+|.-+..--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4678999999999999999999999999999998 37899999999999999999999999999999999999999
Q ss_pred CCC
Q 003400 265 IPK 267 (823)
Q Consensus 265 ~pk 267 (823)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 67
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.12 E-value=8e-10 Score=118.56 Aligned_cols=171 Identities=19% Similarity=0.293 Sum_probs=134.9
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHh--cCCcccccccc
Q 003400 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKLD 260 (823)
Q Consensus 183 ~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~L--ng~~l~gr~L~ 260 (823)
...+....++-.|.|++|-..++|.+|.+-++.||.|..|.. ...+..|.|+|+|++.|+.|+.-- +...+.|+.--
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhh
Confidence 344555667889999999999999999999999999998854 446678999999999999998733 33445677777
Q ss_pred ccccCCCCCCCC--C-CCCcccee--eecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003400 261 IHFSIPKDNPSD--K-DLNQGTLV--VFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (823)
Q Consensus 261 V~~a~pk~~~~~--~-~~~~~tLf--V~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~Ln 335 (823)
+.|+..+..... + ....+.|. |-|--+.+|.+-|..++.+.|+|.+|.|..+..-.|.|||++.+.|++|..+||
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcc
Confidence 777754332211 1 11223343 445557899999999999999999999887765679999999999999999999
Q ss_pred CCccCC--ceEEEEecCCCcc
Q 003400 336 RSDIAG--KRIKLEPSRPGGA 354 (823)
Q Consensus 336 G~~i~G--r~I~V~~s~~~~~ 354 (823)
|..|.. ++|+|+|++|..-
T Consensus 181 GADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccccceeEEEEecCccee
Confidence 998874 8899999998753
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=7.7e-11 Score=109.82 Aligned_cols=76 Identities=26% Similarity=0.475 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
.+.++||||+||...++|++|.+||+++|+|+.|.+ +....|||||+|.+.++|+.|++.+++..+..++|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 357899999999999999999999999999999863 455779999999999999999999999999999999988
Q ss_pred c
Q 003400 264 S 264 (823)
Q Consensus 264 a 264 (823)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.9e-10 Score=103.60 Aligned_cols=78 Identities=28% Similarity=0.485 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
..++.|||+|||.++|.++..++|.+||.|+.|++ +...+|.|||.|+++.+|++|++.|+|..+.++.|.|.|..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45789999999999999999999999999999985 5668999999999999999999999999999999999987654
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.12 E-value=2e-10 Score=120.90 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=67.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeCC--CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~--~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
.++|||+||++.+|+++|+++|+.||+|++|++.. ..+|||||+|.+.++|+.||. |||..|.|+.|+|.+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999998743 357999999999999999996 999999999999999764
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2.4e-10 Score=102.90 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=74.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
..-|||+|||+++|.|+..++|++||.|..||+ +...+|-|||.|+|..+|.+|++.|+|..+.++-|.|-+-.+...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 457999999999999999999999999999997 556789999999999999999999999999999999999888765
Q ss_pred cch
Q 003400 355 RRN 357 (823)
Q Consensus 355 r~~ 357 (823)
.+.
T Consensus 98 ~~~ 100 (124)
T KOG0114|consen 98 FKL 100 (124)
T ss_pred HHH
Confidence 443
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=108.63 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=69.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..+||||+||...++||+|.++|+++|+|+.|. .+....|||||+|...++|+.|++.++|..++.+.|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 457999999999999999999999999999984 355678999999999999999999999999999999999864
Q ss_pred C
Q 003400 351 P 351 (823)
Q Consensus 351 ~ 351 (823)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 73
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.08 E-value=3.1e-10 Score=119.45 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
.++|||+|||+.+|+++|+++|+.||+|.+|++. ...+|||||+|.+.++|+.|+. |+|..|.|+.|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 5899999999999999999999999999999853 3367999999999999999996 99999999999999886443
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.07 E-value=5.3e-10 Score=92.87 Aligned_cols=69 Identities=32% Similarity=0.643 Sum_probs=63.0
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEeCCC---cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~---srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
+|+|+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999876433 47999999999999999999999999999999874
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.06 E-value=4.3e-10 Score=95.50 Aligned_cols=66 Identities=35% Similarity=0.644 Sum_probs=58.8
Q ss_pred eeeecCCCCCCHHHHHHHhcccCceEEEEeCC----CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 280 LfV~NLp~~vteedL~~~Fs~fG~I~~iri~~----~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
|||+|||.++++++|+++|+.||.|..+++.. ..+++|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999997643 3579999999999999999999999999999885
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=3.9e-10 Score=119.58 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..--++|+|.|||...-|-||+.+|++||.|.+|.+ ..-+|||+||+|++++||++|.++|+|..+.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 334579999999999999999999999999999884 45689999999999999999999999999999999999886
Q ss_pred CC
Q 003400 266 PK 267 (823)
Q Consensus 266 pk 267 (823)
++
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.04 E-value=4.5e-10 Score=95.36 Aligned_cols=66 Identities=23% Similarity=0.545 Sum_probs=58.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 195 LfV~NLP~~vteeeLr~lFs~fG~I~~v~~~----~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
|||+|||+++++++|+++|+.||.|..+.+. ++.+++|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999998742 34689999999999999999999988999998764
No 78
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.03 E-value=8.1e-10 Score=90.14 Aligned_cols=56 Identities=34% Similarity=0.594 Sum_probs=51.6
Q ss_pred HHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 294 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 294 L~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
|+++|++||+|.++++....+++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987666799999999999999999999999999999999986
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=116.05 Aligned_cols=160 Identities=13% Similarity=0.206 Sum_probs=112.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-----CC--EEEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQY-----GD--IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~f-----G~--I~~v~-~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
.-.|-+++||.++++.|+.++|..- |. |.-|. ..++..|-|||.|..+++|+.|+.+ +...+..|-|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 3466789999999999999999622 22 22333 2677889999999999999999985 33333333222211
Q ss_pred cC-----------------C-----C-----CCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCc-eEE--EEe----
Q 003400 264 SI-----------------P-----K-----DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKE--IRE---- 309 (823)
Q Consensus 264 a~-----------------p-----k-----~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~-I~~--iri---- 309 (823)
+. + - ...........+|.+++||++.+.|+|-++|..|-. |+. |.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 10 0 0 000111223568999999999999999999998863 222 322
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 310 TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 310 ~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
.++..|-|||+|.+.++|..|....+.+...++-|+|-.+.-.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 3566789999999999999999988888888888888766443
No 80
>smart00362 RRM_2 RNA recognition motif.
Probab=99.00 E-value=1.3e-09 Score=90.58 Aligned_cols=69 Identities=30% Similarity=0.580 Sum_probs=62.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
+|||+|||..+++++|+++|++||+|..+.+. +..+|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999998753 3357999999999999999999999999999888763
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=98.99 E-value=7.7e-10 Score=121.92 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=69.0
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCC-CcccEEEEEEcCH--HHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~-~srG~aFVeF~d~--e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
...+|||+||.+++++++|+.+|..||.|.+|.+.. ..||||||+|.+. .++.+||..|||.++.|+.|+|..+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 446899999999999999999999999999986531 2389999999987 7899999999999999999999999874
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.6e-09 Score=113.72 Aligned_cols=92 Identities=30% Similarity=0.413 Sum_probs=79.9
Q ss_pred ccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003400 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (823)
Q Consensus 263 ~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (823)
...|..++......-+||||.-|+++++|.+|+..|+.||.|+.|+ ++++++|||||+|++..+...|.+..+|.
T Consensus 87 ~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 87 LWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred hcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 3455555544455668999999999999999999999999999996 47899999999999999999999999999
Q ss_pred ccCCceEEEEecCCCcc
Q 003400 338 DIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 338 ~i~Gr~I~V~~s~~~~~ 354 (823)
.|+|+.|.|.+-+-...
T Consensus 167 ~Idgrri~VDvERgRTv 183 (335)
T KOG0113|consen 167 KIDGRRILVDVERGRTV 183 (335)
T ss_pred eecCcEEEEEecccccc
Confidence 99999999999766543
No 83
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.97 E-value=6.5e-10 Score=109.46 Aligned_cols=78 Identities=31% Similarity=0.492 Sum_probs=70.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
..++|||+|||.++.+.||+++|-+||.|..|.+. .....||||+|++..+|+.||..-+|..++|++|+|+|.+...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 46789999999999999999999999999999763 3345799999999999999999999999999999999998664
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.97 E-value=7.5e-10 Score=110.84 Aligned_cols=80 Identities=26% Similarity=0.465 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.......+|.|-||..-++.++|+.+|++||.|.+|++ +..++|||||.|.+..+|+.|+++|+|..|.|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34445689999999999999999999999999999984 7889999999999999999999999999999999999
Q ss_pred cccCC
Q 003400 262 HFSIP 266 (823)
Q Consensus 262 ~~a~p 266 (823)
++|.-
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 98853
No 85
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=9.6e-10 Score=112.44 Aligned_cols=77 Identities=23% Similarity=0.444 Sum_probs=66.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
.+..-++|||++|++.+..++|++.|++||+|.+.. .++++|||+||+|.|.++|.+|++. ..-.|.||+..+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 344558999999999999999999999999998875 3789999999999999999999985 4456888888777
Q ss_pred ccC
Q 003400 263 FSI 265 (823)
Q Consensus 263 ~a~ 265 (823)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 653
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=7.3e-10 Score=110.92 Aligned_cols=76 Identities=33% Similarity=0.543 Sum_probs=70.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
..+|.|-||-+-++.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+.+|+|..++|+.|+|++++-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 458999999999999999999999999999865 778999999999999999999999999999999999998865
Q ss_pred C
Q 003400 352 G 352 (823)
Q Consensus 352 ~ 352 (823)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 4
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.92 E-value=9e-09 Score=114.62 Aligned_cols=229 Identities=14% Similarity=0.162 Sum_probs=150.7
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcEEEeccCccCcccceeEeeecCccccc---cccccccCCCCc----------cc
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAG----------TV 181 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v~V~~d~~es~~~g~~~v~~~e~~~a~---~~~~~~l~n~~~----------~~ 181 (823)
-.+-+++|||++++.|+.++|++++--.|.+-..+++..|-++|.+...+.++ +...-.+.+.-+ +.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 44667999999999999999999987666666677888898999888776554 111111222200 00
Q ss_pred cC--CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE-EE----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 003400 182 AG--EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LY----TACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (823)
Q Consensus 182 ~~--~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~-v~----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l 254 (823)
.. ..+......-+|-+++||..||++||.++|+-.-.|.. +. ...+..|=|||+|.+.+.|++|+.. +...|
T Consensus 91 ~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i 169 (510)
T KOG4211|consen 91 VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI 169 (510)
T ss_pred cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh
Confidence 00 01112235578999999999999999999996644433 11 2355778899999999999999974 43444
Q ss_pred cccccccccc-----------------------CCCCCCC---------------C------------------------
Q 003400 255 RRRKLDIHFS-----------------------IPKDNPS---------------D------------------------ 272 (823)
Q Consensus 255 ~gr~L~V~~a-----------------------~pk~~~~---------------~------------------------ 272 (823)
..+-|.|-.+ .+..... .
T Consensus 170 GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~g 249 (510)
T KOG4211|consen 170 GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFG 249 (510)
T ss_pred ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccc
Confidence 3333322110 0000000 0
Q ss_pred -----CC---------------------CCc-cceeeecCCCCCCHHHHHHHhcccCce---EEEEeCCCcccEEEEEEc
Q 003400 273 -----KD---------------------LNQ-GTLVVFNLDPSVSNEDLRQIFGAYGEV---KEIRETPHKRHHKFIEFY 322 (823)
Q Consensus 273 -----~~---------------------~~~-~tLfV~NLp~~vteedL~~~Fs~fG~I---~~iri~~~srG~aFVeF~ 322 (823)
++ ... ..++.++||+..++.++...|+..-.+ ..|..+++..|-|+|+|.
T Consensus 250 s~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~ 329 (510)
T KOG4211|consen 250 SYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFA 329 (510)
T ss_pred ccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecc
Confidence 00 000 257778999999999999999976433 223336677889999999
Q ss_pred CHHHHHHHHHHhCCCccCCceEE
Q 003400 323 DVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 323 d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
+.++|..|+-. ++..+..+-|.
T Consensus 330 t~edav~Amsk-d~anm~hrYVE 351 (510)
T KOG4211|consen 330 TGEDAVGAMGK-DGANMGHRYVE 351 (510)
T ss_pred cchhhHhhhcc-CCcccCcceee
Confidence 99999999873 55555554444
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.92 E-value=5.5e-09 Score=87.17 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=64.0
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEeCCC----cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~----srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999876443 378999999999999999999999999999999864
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=3.9e-09 Score=109.65 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=66.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..+|||+||++.+|+++|+++|+.||+|.+|++. +..+++|||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4589999999999999999999999999999874 3456899999999999999995 99999999999998764
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=98.90 E-value=2.9e-09 Score=117.51 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-CCCcccEEEEEeCCH--HHHHHHHHHhcCCccccccccccccCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-~~ksrG~AFV~F~~~--e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
....+|||+||++++++++|+.+|..||.|.+|.+ ....||||||+|.+. .++.+||..|+|..+.|+.|+|..|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34579999999999999999999999999999984 223489999999987 789999999999999999999998865
Q ss_pred C
Q 003400 267 K 267 (823)
Q Consensus 267 k 267 (823)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 3
No 91
>smart00360 RRM RNA recognition motif.
Probab=98.90 E-value=4.5e-09 Score=86.78 Aligned_cols=66 Identities=33% Similarity=0.649 Sum_probs=59.7
Q ss_pred eecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 282 VFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 282 V~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
|+|||..+++++|+++|++||.|..+++. +.++++|||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999998763 3447899999999999999999999999999999874
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-09 Score=110.38 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=74.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||++|..++++.-|...|-+||.|+.|.+ +.+.||||||+|.-.|+|..||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999975 56789999999999999999999999999999999999999
Q ss_pred CCccc
Q 003400 351 PGGAR 355 (823)
Q Consensus 351 ~~~~r 355 (823)
|...+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 97644
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=4.3e-09 Score=110.67 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
..+|-+||||.-|+.+++|.+|+..|+.||+|+.|. ++++++|||||+|++..+...|.+..+|..|.|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 447889999999999999999999999999999986 589999999999999999999999999999999999998
Q ss_pred ccC
Q 003400 263 FSI 265 (823)
Q Consensus 263 ~a~ 265 (823)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 754
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=3.4e-09 Score=86.49 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=50.9
Q ss_pred HHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 209 LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 209 Lr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|+|..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999876555799999999999999999999999999999999885
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.86 E-value=7.4e-09 Score=86.36 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=63.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCC----CcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~----ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999987533 2479999999999999999999999999999888764
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.86 E-value=6e-09 Score=108.30 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=66.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..+|||+||++.+|+++|+++|+.||+|.+|++ .++.+++|||+|+++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 479999999999999999999999999999985 45567899999999999999996 99999999999887643
No 97
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=3.5e-09 Score=108.41 Aligned_cols=77 Identities=27% Similarity=0.350 Sum_probs=67.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
.-++|||++|+++++.|+|++.|++||+|.+..+ ++++||||||+|.|.++|.+|++.- .-.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 4468999999999999999999999999998743 7889999999999999999999953 468999999998876
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
-+.
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 643
No 98
>smart00360 RRM RNA recognition motif.
Probab=98.84 E-value=7e-09 Score=85.63 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=59.1
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 197 VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 197 V~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999998874 34557999999999999999999999999999888763
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=5e-09 Score=98.57 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=72.1
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
......|||.++....++++|.+.|..||+|+.+.+ ++-.+|||+|+|.+.++|++|+.+|||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 345568999999999999999999999999999964 667799999999999999999999999999999999998
Q ss_pred cCCCc
Q 003400 349 SRPGG 353 (823)
Q Consensus 349 s~~~~ 353 (823)
+--++
T Consensus 149 ~Fv~g 153 (170)
T KOG0130|consen 149 CFVKG 153 (170)
T ss_pred EEecC
Confidence 75443
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.1e-09 Score=108.34 Aligned_cols=81 Identities=26% Similarity=0.507 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...|+|||++|..+|+|.-|...|-.||+|..|.+ +.++||||||+|...|+|..||..|++.++.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35799999999999999999999999999999973 6789999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003400 265 IPKDNP 270 (823)
Q Consensus 265 ~pk~~~ 270 (823)
.|.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 986543
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=105.74 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=70.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
..+|||+|||.++++++|+++|..||.|..+++ ++..+|+|||+|.+.++|..|+..++|..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999988754 567899999999999999999999999999999999999764
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=5.2e-08 Score=109.33 Aligned_cols=157 Identities=20% Similarity=0.346 Sum_probs=112.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-------CCCccc---EEEEEeCCHHHHHHHHHHhcCCcccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-------ACKHRG---FVMISYYDIRAARTAMRALQNKPLRRRK 258 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-------~~ksrG---~AFV~F~~~e~A~~Ai~~Lng~~l~gr~ 258 (823)
..-+++|||++||++++|++|...|..||.+..=+- ....+| |+|+.|+++..++.-+.+..- ....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 345789999999999999999999999998764331 122455 999999999999887775432 2223
Q ss_pred ccccccCCCCC-------------------CCCCCCCccceeeecCCCCCCHHHHHHHhc-ccCceEEEEeC-----CCc
Q 003400 259 LDIHFSIPKDN-------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRET-----PHK 313 (823)
Q Consensus 259 L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~~vteedL~~~Fs-~fG~I~~iri~-----~~s 313 (823)
++++.+.+... ....-...+||||++||..++.++|..+|. -||.|..+-|. +..
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 33322222111 111122457999999999999999999999 79999998653 346
Q ss_pred ccEEEEEEcCHHHHHHHHHH----hCCCccCCceEEEEec
Q 003400 314 RHHKFIEFYDVRAAEAALKS----LNRSDIAGKRIKLEPS 349 (823)
Q Consensus 314 rG~aFVeF~d~e~A~kAl~~----LnG~~i~Gr~I~V~~s 349 (823)
+|-|-|.|.+..+-.+||.+ |+..+| .|+|+|+..
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~-~KRVEIkPY 451 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDI-DKRVEIKPY 451 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEecccc-ceeeeecce
Confidence 88899999999999999873 222233 246666543
No 103
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=5.2e-09 Score=122.96 Aligned_cols=159 Identities=21% Similarity=0.365 Sum_probs=138.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~----~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...++|||++||+..+++.+|+..|..+|.|..|.+. +....|+||.|.+...+-+|...+.+..|....+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3467899999999999999999999999999998753 334459999999999999999999999998778788777
Q ss_pred CCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCC--c
Q 003400 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--K 342 (823)
Q Consensus 265 ~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G--r 342 (823)
.++ ....+.++|++|...+....|...|..||.|..|.+. +..-||+|.|.+...|+.|...|.|..|+| +
T Consensus 449 ~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 449 QPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred ccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 552 2345689999999999999999999999999999874 345699999999999999999999999987 8
Q ss_pred eEEEEecCCCcc
Q 003400 343 RIKLEPSRPGGA 354 (823)
Q Consensus 343 ~I~V~~s~~~~~ 354 (823)
+|.|.|+.....
T Consensus 522 r~rvdla~~~~~ 533 (975)
T KOG0112|consen 522 RLRVDLASPPGA 533 (975)
T ss_pred ccccccccCCCC
Confidence 899999887653
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=114.20 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=73.6
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
..+||+|+|+++++++|..+|+..|.|.++++ +++.+||||++|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999964 7889999999999999999999999999999999999999876
Q ss_pred cccc
Q 003400 353 GARR 356 (823)
Q Consensus 353 ~~r~ 356 (823)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6543
No 105
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.5e-08 Score=103.25 Aligned_cols=97 Identities=20% Similarity=0.348 Sum_probs=81.9
Q ss_pred cccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHH
Q 003400 256 RRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAAL 331 (823)
Q Consensus 256 gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl 331 (823)
+|+|.|+.+...... .++++|||+-|.+.-.|||++.+|.+||.|.+|.+ .+.+||+|||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesrg----~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG----GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCC----ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 467788877544332 25679999999999999999999999999999976 4668999999999999999999
Q ss_pred HHhCCC-ccCC--ceEEEEecCCCcccc
Q 003400 332 KSLNRS-DIAG--KRIKLEPSRPGGARR 356 (823)
Q Consensus 332 ~~LnG~-~i~G--r~I~V~~s~~~~~r~ 356 (823)
..|+|. .+.| ..|.|+|+...++|.
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHH
Confidence 999996 5655 789999998877654
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.69 E-value=2.2e-08 Score=113.40 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=71.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
+.|||+|||.+++|++|.++|+..|.|.+++ .+++.+||||++|.+.++|.+|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999987 47899999999999999999999999999999999999998544
Q ss_pred C
Q 003400 268 D 268 (823)
Q Consensus 268 ~ 268 (823)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=2.9e-09 Score=104.81 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=69.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
....-|||+|||+++||.||.-+|++||+|..|.+ +|+++||||+.|+|.++..-|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34568999999999999999999999999999853 8899999999999999999999999999999999999854
Q ss_pred C
Q 003400 350 R 350 (823)
Q Consensus 350 ~ 350 (823)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.68 E-value=3.3e-08 Score=101.08 Aligned_cols=76 Identities=29% Similarity=0.597 Sum_probs=71.1
Q ss_pred cceeeecCCCCCCHHHHHH----HhcccCceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 278 GTLVVFNLDPSVSNEDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~----~Fs~fG~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
.||||.||+..+..++|+. +|++||+|.+|.. +++.+|.|||.|++.+.|..|+++|+|..+.|+.++|.||+.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999998 9999999999975 567899999999999999999999999999999999999987
Q ss_pred Cc
Q 003400 352 GG 353 (823)
Q Consensus 352 ~~ 353 (823)
+.
T Consensus 90 ~s 91 (221)
T KOG4206|consen 90 DS 91 (221)
T ss_pred cc
Confidence 65
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=98.65 E-value=6.7e-08 Score=82.78 Aligned_cols=56 Identities=32% Similarity=0.500 Sum_probs=50.0
Q ss_pred HHHHHHHhc----ccCceEEEE---e---C--CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003400 291 NEDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (823)
Q Consensus 291 eedL~~~Fs----~fG~I~~ir---i---~--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V 346 (823)
+++|+++|+ +||.|.+|. + + +.++|+|||+|.+.++|.+|++.|||+.+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999884 2 2 667999999999999999999999999999999986
No 110
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=3.8e-08 Score=92.71 Aligned_cols=78 Identities=18% Similarity=0.467 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...-.|||.++...++|++|.+.|..||+|+.+.+ ++-.+|||+|+|++.++|++|+.++||..|.+++|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34468999999999999999999999999999873 6678999999999999999999999999999999999997
Q ss_pred CCC
Q 003400 265 IPK 267 (823)
Q Consensus 265 ~pk 267 (823)
.-+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 543
No 111
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=4.1e-09 Score=103.79 Aligned_cols=76 Identities=20% Similarity=0.432 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.++.-|||+|||.+.||.||.-+|++||+|..|. .+++++||||+.|+|.++...|+..|+|..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3578899999999999999999999999999986 38999999999999999999999999999999999999765
Q ss_pred C
Q 003400 265 I 265 (823)
Q Consensus 265 ~ 265 (823)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=7.6e-08 Score=109.75 Aligned_cols=165 Identities=19% Similarity=0.349 Sum_probs=131.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcC-----------C-CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~f-----------G-~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g 256 (823)
....+.++|+++|..++++....+|..- | .|..+.+ +..+.||||+|.+.++|..|+. +++..+.|
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 3456899999999999999999999753 3 3666644 6678999999999999999998 78888888
Q ss_pred ccccccccCCCC-------------------CCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCC
Q 003400 257 RKLDIHFSIPKD-------------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPH 312 (823)
Q Consensus 257 r~L~V~~a~pk~-------------------~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~ 312 (823)
.++++.--.... ...........++|++||..+++.+++++...||.++..+. ++.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 877654311100 00011122358999999999999999999999998877643 467
Q ss_pred cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003400 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (823)
Q Consensus 313 srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r 355 (823)
++||||.+|.+......|+..|||..+.+++|.|..+..+...
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~ 372 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASN 372 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchh
Confidence 8999999999999999999999999999999999998876543
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.60 E-value=6.1e-08 Score=112.52 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
+|||||+.|+.+++|.||.++|+.||+|.+|.+ ...+|||||.+....+|.+|+.+|.+..+.++.|+|.|+.-+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 689999999999999999999999999999975 45799999999999999999999999999999999999976543
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.53 E-value=1.7e-07 Score=109.01 Aligned_cols=80 Identities=29% Similarity=0.397 Sum_probs=74.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r 355 (823)
..+||||+.|+..+++.||..+|+.||.|.+|.+. .++++|||.+..+.+|.+|+.+|+...+.++.|+|.|+..++-+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 34799999999999999999999999999999886 46899999999999999999999999999999999999998877
Q ss_pred c
Q 003400 356 R 356 (823)
Q Consensus 356 ~ 356 (823)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 5
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.46 E-value=2.9e-07 Score=78.87 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=49.9
Q ss_pred HHHHHHHhh----cCCCEEEEE---e---C--CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 206 DSELRALFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 206 eeeLr~lFs----~fG~I~~v~---~---~--~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999884 2 2 668999999999999999999999999999999875
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=3.1e-07 Score=98.72 Aligned_cols=83 Identities=23% Similarity=0.430 Sum_probs=72.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHh-cCCccccccccc
Q 003400 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDI 261 (823)
Q Consensus 183 ~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~L-ng~~l~gr~L~V 261 (823)
-..+..+...++|||++|-..++|.+|++.|.+||+|+++.+.. .+++|||+|.+.++|+.|.+++ +...|.|++|.|
T Consensus 219 ~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 219 TLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred ccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 35566677789999999999999999999999999999997543 5679999999999999998875 445578999999
Q ss_pred cccCC
Q 003400 262 HFSIP 266 (823)
Q Consensus 262 ~~a~p 266 (823)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=2.4e-07 Score=93.97 Aligned_cols=143 Identities=20% Similarity=0.309 Sum_probs=115.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
...+||||.|+-..|+|+-|.++|-+-|+|..|.+ ..+.+ ||||.|.++-...-|++.++|..+.++.+.+.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 35699999999999999999999999999999974 23334 99999999999999999999999999998887532
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (823)
-.. ..- |+..++++.+...|+.-|.+..+|+ .+.++.++|+.+....+.-.|+....+....-
T Consensus 86 G~s--------hap-----ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GNS--------HAP-----LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CCC--------cch-----hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 110 111 5667899999999999999988875 35578899999998888888888777666554
Q ss_pred ceEEE
Q 003400 342 KRIKL 346 (823)
Q Consensus 342 r~I~V 346 (823)
+++.+
T Consensus 153 ~~~~~ 157 (267)
T KOG4454|consen 153 KKVTI 157 (267)
T ss_pred CCccc
Confidence 44443
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=7.1e-08 Score=113.34 Aligned_cols=140 Identities=14% Similarity=0.222 Sum_probs=120.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
..++||+||+..+.+.+|...|..+|.+..+. ..++-+|+|||.|..+++|.+|+....+..+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----------
Confidence 35889999999999999999999999887765 35778899999999999999999854444333
Q ss_pred CCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003400 267 KDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (823)
Q Consensus 267 k~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (823)
...|+|.|.|+..|.++|+.++..+|.+.+.++ .++.+|.|+|.|.+..+|.+++...++..+.-+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 236999999999999999999999999999864 467789999999999999999998888888777
Q ss_pred eEEEEecCCC
Q 003400 343 RIKLEPSRPG 352 (823)
Q Consensus 343 ~I~V~~s~~~ 352 (823)
.+.|..+.+.
T Consensus 806 ~~~v~vsnp~ 815 (881)
T KOG0128|consen 806 NGEVQVSNPE 815 (881)
T ss_pred CccccccCCc
Confidence 8888776653
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=6.9e-07 Score=96.05 Aligned_cols=78 Identities=35% Similarity=0.526 Sum_probs=68.5
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHH-hCCCccCCceEEEEecCC
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS-LNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~-LnG~~i~Gr~I~V~~s~~ 351 (823)
++..-.+|||++|...+++.+|+++|.+||+|++|++... +++|||+|.++++|+.|..+ +|...|+|++|+|.|+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3445579999999999999999999999999999998754 56999999999999998764 455689999999999988
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.3e-07 Score=96.16 Aligned_cols=77 Identities=27% Similarity=0.426 Sum_probs=70.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
+.+.|||--|.+-+++++|.-||+.||.|.+|.+ ++.+-.||||+|++.+++++|.-.|++..|++++|.|.|+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4578999999999999999999999999999864 56677899999999999999999999999999999999986
Q ss_pred CC
Q 003400 351 PG 352 (823)
Q Consensus 351 ~~ 352 (823)
.-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 53
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.26 E-value=1.2e-06 Score=95.04 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=128.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...+++|++++...+.+.++..++..+|.+..+. -...++|++.|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4578999999999999999999999999766554 24568999999999999999999954434555554444333
Q ss_pred CCCCCCC------CCCCCcccee-eecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003400 265 IPKDNPS------DKDLNQGTLV-VFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 332 (823)
Q Consensus 265 ~pk~~~~------~~~~~~~tLf-V~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~ 332 (823)
....... .......+++ |.+|+..+++++|+..|..+|.|..+++ ++..+++|+|+|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 2221100 0111223555 9999999999999999999999999976 45678999999999999999999
Q ss_pred HhCCCccCCceEEEEecCCCcc
Q 003400 333 SLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
. +...+.++.+.|.+..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88899999999999887643
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.21 E-value=1e-06 Score=91.21 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=100.9
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCC--CCCCCccceeeecCCCCCCHHHHHHHhcccC
Q 003400 225 ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS--DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302 (823)
Q Consensus 225 ~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~--~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG 302 (823)
...-++++|+.|.....-.++-..-+++.+.-.++++.-.....++. +.+.++.+||++.|..+++++.|...|.+|-
T Consensus 136 p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfp 215 (290)
T KOG0226|consen 136 PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFP 215 (290)
T ss_pred CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhcc
Confidence 45677899999999888888877667777766666554433333332 3345667999999999999999999999985
Q ss_pred ce-----EEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 303 EV-----KEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 303 ~I-----~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
.. ..-.-+++++||+||.|.+..++..|+++|+|+.++.+.|++.-+..+.
T Consensus 216 sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 216 SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 33 2223478999999999999999999999999999999999987665543
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.5e-06 Score=93.36 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..|...|||..|.+-+|+++|.-+|+.||.|.+|.+ ++.+..||||+|++.+++++|.-+|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 357899999999999999999999999999999873 677888999999999999999999999999999999999
Q ss_pred cCC
Q 003400 264 SIP 266 (823)
Q Consensus 264 a~p 266 (823)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 853
No 124
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=2.2e-06 Score=88.55 Aligned_cols=148 Identities=16% Similarity=0.203 Sum_probs=96.3
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE----------EEeccCccCcccceeEeeecCcc---ccccccc---cccCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM----------ELEGEPQESLSMSMSKISISDSA---SGNGLLH---YSVPNG 177 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v----------~V~~d~~es~~~g~~~v~~~e~~---~a~~~~~---~~l~n~ 177 (823)
|.+++|++|++...+.++..+|..+|.+ +|++++.-.+..++-.+.-.+.. .+.+... ......
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~ 80 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP 80 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC
Confidence 4578999999999999999999999986 34444332222221111100000 0000000 000000
Q ss_pred -Ccc---ccCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 003400 178 -AGT---VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253 (823)
Q Consensus 178 -~~~---~~~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~ 253 (823)
.+. ............+.|+|.+++..+.+.+|.+.|.++|.+..... ..+++||+|.+.++|.+|+..|++..
T Consensus 81 ~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 81 RGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchh
Confidence 000 00000111334578999999999999999999999999954432 67899999999999999999999999
Q ss_pred ccccccccccc
Q 003400 254 LRRRKLDIHFS 264 (823)
Q Consensus 254 l~gr~L~V~~a 264 (823)
+.++.|.+...
T Consensus 158 ~~~~~l~~~~~ 168 (216)
T KOG0106|consen 158 LNGRRISVEKN 168 (216)
T ss_pred hcCceeeeccc
Confidence 99999998543
No 125
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.16 E-value=1.5e-05 Score=85.84 Aligned_cols=153 Identities=14% Similarity=0.201 Sum_probs=103.0
Q ss_pred hcCccccccccCCCCCChHHHHHhhcCCCcE-----------EEeccCccCcccceeEeeecCccccc----cccccccC
Q 003400 111 AGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM-----------ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVP 175 (823)
Q Consensus 111 ~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v-----------~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~ 175 (823)
..+-+.+||.+||.+++..+..++|+.||.| .|=.+ ..+.-+|-+...+...+.+. -+....+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3456789999999999999999999999987 22111 22444555555554443222 11111111
Q ss_pred CCC-----------------cccc-----------------C-----CCCCCCCCCcEEEEcCCCC----CCC-------
Q 003400 176 NGA-----------------GTVA-----------------G-----EHPYGEHPSRTLFVRNINS----NVE------- 205 (823)
Q Consensus 176 n~~-----------------~~~~-----------------~-----~~~~~e~~srtLfV~NLP~----~vt------- 205 (823)
+.. .+.. + ..+...+..++|.++|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 110 0000 0 1123344568999999832 122
Q ss_pred HHHHHHHhhcCCCEEEEEeC-CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 206 DSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 206 eeeLr~lFs~fG~I~~v~~~-~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
+++|++-.++||.|.+|.+. ....|.+-|.|.+.++|..||+.|+|+.|.||.|.....
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 45677778999999999864 456799999999999999999999999999999987765
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.15 E-value=5.2e-06 Score=84.03 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=71.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhccc-CceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~f-G~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
...+.++|..+|.-+.+.++...|.+| |.|..+|+ +|.++|||||+|++.+.|.-|-+.||++.+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345689999999999999999999999 77777765 788999999999999999999999999999999999999
Q ss_pred cCCC
Q 003400 349 SRPG 352 (823)
Q Consensus 349 s~~~ 352 (823)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8776
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.10 E-value=7e-06 Score=83.09 Aligned_cols=79 Identities=18% Similarity=0.369 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcC-CCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQY-GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~f-G~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.......+||..+|.-+.+.+|..+|.+| |.|+.++ .++.++|||||+|++.+.|+-|-+.||+..+.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999999 6777776 37889999999999999999999999999999999999
Q ss_pred cccCC
Q 003400 262 HFSIP 266 (823)
Q Consensus 262 ~~a~p 266 (823)
++-.|
T Consensus 125 ~vmpp 129 (214)
T KOG4208|consen 125 HVMPP 129 (214)
T ss_pred EEeCc
Confidence 98754
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.02 E-value=1.5e-05 Score=81.27 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=66.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEE--EeCCCc----ccEEEEEEcCHHHHHHHHHHhCCCccC---CceEEEE
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALKSLNRSDIA---GKRIKLE 347 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i--ri~~~s----rG~aFVeF~d~e~A~kAl~~LnG~~i~---Gr~I~V~ 347 (823)
-+||||.+||.++...||..+|..|-.-+.+ +.+.+. +-+|||.|.+.++|..|+++|||..++ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4799999999999999999999998544443 444433 368999999999999999999999887 6899999
Q ss_pred ecCCCccc
Q 003400 348 PSRPGGAR 355 (823)
Q Consensus 348 ~s~~~~~r 355 (823)
+++....+
T Consensus 114 lAKSNtK~ 121 (284)
T KOG1457|consen 114 LAKSNTKR 121 (284)
T ss_pred ehhcCccc
Confidence 99876543
No 129
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=4.6e-05 Score=86.16 Aligned_cols=150 Identities=19% Similarity=0.204 Sum_probs=105.8
Q ss_pred CCCCCCcchhHhhhcCccccccccCCCCCChHHHHHhhcCCCcEEEeccC-cc----Ccccc---eeEeeecCccccccc
Q 003400 98 IGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEP-QE----SLSMS---MSKISISDSASGNGL 169 (823)
Q Consensus 98 i~n~LP~d~d~l~~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v~V~~d~-~e----s~~~g---~~~v~~~e~~~a~~~ 169 (823)
..+.+|.. ..-...+..++||++||++++|.++...|..||.+.|+-.. .+ ...+| ++++-|.++..+..+
T Consensus 244 ~~~~~~~~-~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 244 WSGSLPPR-GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hccccCCC-CCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 33455544 34445567999999999999999999999999999876552 11 12345 999988877544311
Q ss_pred cccc----------cCCCCccc---------------cCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhh-cCCCEEEEE
Q 003400 170 LHYS----------VPNGAGTV---------------AGEHPYGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLY 223 (823)
Q Consensus 170 ~~~~----------l~n~~~~~---------------~~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~ 223 (823)
..-. +.....+. ..+....-++.+||||++||.-++.+||..+|+ -||.|..+-
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaG 402 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVG 402 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEE
Confidence 1100 11110000 112223456889999999999999999999999 899998876
Q ss_pred e--C---CCcccEEEEEeCCHHHHHHHHHH
Q 003400 224 T--A---CKHRGFVMISYYDIRAARTAMRA 248 (823)
Q Consensus 224 ~--~---~ksrG~AFV~F~~~e~A~~Ai~~ 248 (823)
+ . +-.+|-|-|.|.+..+=.+||.+
T Consensus 403 IDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 403 IDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4 2 23679999999999999999984
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.98 E-value=1.1e-05 Score=91.05 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=68.2
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
.+|+|.+|...+...+|+.+|++||+|+-.++ ++..+.|+||++.+.++|.++|..|+.+++.|+.|.|+.+++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 58999999999999999999999999988765 3446789999999999999999999999999999999988763
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.98 E-value=6.5e-07 Score=97.85 Aligned_cols=149 Identities=18% Similarity=0.352 Sum_probs=121.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCC-ccccccccccccCCCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~-~l~gr~L~V~~a~pk~~ 269 (823)
.+||++||.+.++.++|+.+|..- +--..+ --..||+||.+.+...|.+|++.++|+ .+.|+++.+.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999753 111111 124589999999999999999999985 58899999999887654
Q ss_pred CCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCC--cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 270 ~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~--srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
. .+.+-|.|+|+...++-|..+...||.|..|..+.. ..-..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 3 345899999999999999999999999999864322 12234578899999999999999999999999888
Q ss_pred ecC
Q 003400 348 PSR 350 (823)
Q Consensus 348 ~s~ 350 (823)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 753
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.94 E-value=2e-05 Score=89.03 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.-.|+|||.+|...+-..+|+.||++||.|.-.++ +.-.+.|+||++.+.++|.+||..|+.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34589999999999999999999999999987662 3345679999999999999999999999999999999876
Q ss_pred C
Q 003400 265 I 265 (823)
Q Consensus 265 ~ 265 (823)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.90 E-value=8.6e-06 Score=82.50 Aligned_cols=90 Identities=21% Similarity=0.368 Sum_probs=60.2
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEee--eccc--ccceeEEEEEecCCcccHHHHHHHhcCCcccCCC
Q 003400 692 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP--IDFK--NKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN 767 (823)
Q Consensus 692 d~rTt~MirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp--~d~~--~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~ 767 (823)
..++.|.||++|..+|++.+++.|+......++|-|.+ .+.. ..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45789999999999999999998887666665555554 2222 3345677999999999999999999999998654
Q ss_pred C-ccEEEEEeeeccc
Q 003400 768 S-EKVASLAYARIQG 781 (823)
Q Consensus 768 s-~k~~~~~~A~iQg 781 (823)
. .-++.|.||--|-
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 3 4889999998764
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.86 E-value=3.1e-05 Score=92.08 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=116.0
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE-EEeccCc-cCcccceeEeeecCccccc----cccccccCCCCccccCCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQ-ESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 187 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v-~V~~d~~-es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~~ 187 (823)
.+.+++++|...+++.++...|..+|.+ .|.++.. -....++.|+.+.....+. ......+.++..+..-..+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~- 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP- 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-
Confidence 5889999999999999999999999988 6777764 4445566666666553332 2223333333222222222
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccc--ccccccccC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 265 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g--r~L~V~~a~ 265 (823)
...+++.++|++|+..+....|...|..||.|+.|.. .....||+|.|.+...|+.|++.+.|..|.+ +.|.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4467899999999999999999999999999999854 3456799999999999999999999999974 678888876
Q ss_pred CC
Q 003400 266 PK 267 (823)
Q Consensus 266 pk 267 (823)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 54
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.86 E-value=3.1e-05 Score=81.70 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
.-..+|+|.|||..|+++||+++|+.||.+..+-+ .+++.|.|-|.|...++|.+|++.+++..+.|++|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34478999999999999999999999998887763 67788999999999999999999999999999998888764
Q ss_pred C
Q 003400 266 P 266 (823)
Q Consensus 266 p 266 (823)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.84 E-value=4.4e-05 Score=80.54 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
...+|+|.|||+.++++||+++|..||.++.+-+ .+.+.|.|-|.|...++|.+|++.+||..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998887744 567789999999999999999999999999999999988765
Q ss_pred Cc
Q 003400 352 GG 353 (823)
Q Consensus 352 ~~ 353 (823)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 44
No 137
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.82 E-value=3.9e-05 Score=88.95 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=71.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe--------CCCcccEEEEEeCCHHHHHHHHHHhcCCccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--------~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr 257 (823)
..++..+++|||+||++.++++.|...|..||+|.+|++ ..+.+.|+||.|-+..+|++|++.|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 344566789999999999999999999999999999984 234567999999999999999999999999999
Q ss_pred cccccccCC
Q 003400 258 KLDIHFSIP 266 (823)
Q Consensus 258 ~L~V~~a~p 266 (823)
.+++.|+++
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999843
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.79 E-value=2.7e-05 Score=90.22 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=70.1
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~--------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
+...++|||+||++.++++.|...|+.||.|..+++. ...+.+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3456799999999999999999999999999999762 23467899999999999999999999999999999
Q ss_pred EEecCC
Q 003400 346 LEPSRP 351 (823)
Q Consensus 346 V~~s~~ 351 (823)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.71 E-value=3.7e-05 Score=87.13 Aligned_cols=73 Identities=23% Similarity=0.387 Sum_probs=61.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe---C--CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~--~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..+|||+|||.++++++|+++|..||+|+...+ . .+...||||+|++.++++.|+.+ +-..+.+++|.|+--+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 356999999999999999999999999988653 2 34448999999999999999996 5667788888887543
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.68 E-value=0.00039 Score=75.93 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=103.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-----CCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~-----fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
+++..+-.++||+..++.+|..+|.- -|.+......++..|.|.|.|.|.|.-+.|++. +...+.++.|.|--+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 35567778999999999999999973 233333334677789999999999999999984 556667777766544
Q ss_pred CCCCC---------C---CCCCCCccceeeecCCCCCCHHHHHHHhccc-----C--ceEEEEe-CCCcccEEEEEEcCH
Q 003400 265 IPKDN---------P---SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAY-----G--EVKEIRE-TPHKRHHKFIEFYDV 324 (823)
Q Consensus 265 ~pk~~---------~---~~~~~~~~tLfV~NLp~~vteedL~~~Fs~f-----G--~I~~iri-~~~srG~aFVeF~d~ 324 (823)
...+- . -....++--|.+++||++.++.|+.++|.+- | .|..|+- .++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 32210 0 0011234467789999999999999999632 2 2333433 667789999999999
Q ss_pred HHHHHHHHH
Q 003400 325 RAAEAALKS 333 (823)
Q Consensus 325 e~A~kAl~~ 333 (823)
++|+.||..
T Consensus 217 e~aq~aL~k 225 (508)
T KOG1365|consen 217 EDAQFALRK 225 (508)
T ss_pred HHHHHHHHH
Confidence 999999984
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.67 E-value=0.00016 Score=63.69 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=49.2
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhcCC-CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 193 RTLFVRNINSNVEDSE----LRALFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 193 rtLfV~NLP~~vteee----Lr~lFs~fG-~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..|+|.|||.+.+... |+.+++.+| .|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999998765 556777786 67776 45899999999999999999999999999999999973
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.66 E-value=0.00015 Score=66.21 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=58.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccc----cccccc
Q 003400 193 RTLFVRNINSNVEDSELRALFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 261 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~----gr~L~V 261 (823)
+||.|+|||...|.++|.+++... |...-++ .+..+.|||||.|.+++.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999988753 3433333 25668999999999999999999999998875 344556
Q ss_pred cccC
Q 003400 262 HFSI 265 (823)
Q Consensus 262 ~~a~ 265 (823)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6654
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.64 E-value=0.0002 Score=63.09 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=48.2
Q ss_pred cceeeecCCCCCCHHH----HHHHhccc-CceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 278 GTLVVFNLDPSVSNED----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 278 ~tLfV~NLp~~vteed----L~~~Fs~f-G~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
..|+|.|||.+.+... |++++.-+ |+|..|. .+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4699999999888655 56777778 4676662 467999999999999999999999999999999998543
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.63 E-value=8.2e-05 Score=84.35 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=64.3
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
.+|||.|||.+++.++|+++|..||.|+..+|. ++...||||+|.+.++++.||.+ +-..|++++|.|+--++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999987652 22337999999999999999996 477899999999987664
Q ss_pred c
Q 003400 353 G 353 (823)
Q Consensus 353 ~ 353 (823)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.56 E-value=9.4e-05 Score=78.04 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=69.1
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
.......+||+|+++.+|.+++..+|+.||.|..+. ..++.+||+||+|.+.+.+++|++ |||..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 344567899999999999999999999999997553 356689999999999999999999 99999999999998
Q ss_pred ecCCC
Q 003400 348 PSRPG 352 (823)
Q Consensus 348 ~s~~~ 352 (823)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 86543
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.49 E-value=3.7e-05 Score=83.89 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=114.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
..|-|.||.+.+|.++++.||.-.|+|..+.+. ......|||.|.|...+..|.. |.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999988742 2345689999999999998877 6777666655544321
Q ss_pred CCCC-------------------CCCC------C---CC------------------------CccceeeecCCCCCCHH
Q 003400 265 IPKD-------------------NPSD------K---DL------------------------NQGTLVVFNLDPSVSNE 292 (823)
Q Consensus 265 ~pk~-------------------~~~~------~---~~------------------------~~~tLfV~NLp~~vtee 292 (823)
.... .+.. . .+ -..|++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 1000 0000 0 00 01479999999999999
Q ss_pred HHHHHhcccCceEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 293 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 293 dL~~~Fs~fG~I~~iri~-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
++-+.|..+|+|...+.. +....+|.|+|........|++ ++|.++.-....+..-+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 999999999999988763 3345578899999999999998 567777644444444444
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.37 E-value=0.00026 Score=82.04 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=113.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-CCCEEEEE---eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~-fG~I~~v~---~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
+++.+-+++.+.+.++.|++++|.. +-.-..+. +.....|-++|.|....++++|++. +...+..|.+.+..+..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 4455667889999999999999863 22222222 3444578999999999999999884 55555555555433210
Q ss_pred C------------CCCC-------------------C----CCCCccceeeecCCCCCCHHHHHHHhcccCceEE-EEeC
Q 003400 267 K------------DNPS-------------------D----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRET 310 (823)
Q Consensus 267 k------------~~~~-------------------~----~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~-iri~ 310 (823)
. .... . -.....+|||..||..+++.++.+.|..--.|++ |.++
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 0 0000 0 0011258999999999999999999998777776 6553
Q ss_pred ----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 311 ----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 311 ----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
++.++.|||+|..++++.+|+..-..+.++-+.|+|.-....
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 345778999999999999999876777777899999765443
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.25 E-value=0.00018 Score=73.56 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=66.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
...||||.|+...++++-|.++|-+-|.|..|.|. ++.+ ||||+|.++-...-|++.|||..+.+..|+|++-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 45799999999999999999999999999999773 2233 999999999999999999999999999999887543
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.20 E-value=0.00038 Score=73.54 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=68.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
.+.+.+.+||+|+...+|.+++...|+.||.|..+. ..+..+||+||+|.+.+.++.|+. |+|..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 455779999999999999999999999999997554 245689999999999999999999 99999999999988
Q ss_pred ccC
Q 003400 263 FSI 265 (823)
Q Consensus 263 ~a~ 265 (823)
+.+
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 754
No 150
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.18 E-value=0.00055 Score=71.50 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=65.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE-----EEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRT-----LYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~-----v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...-+||.+.|..+++++.|-..|.+|-.... -+.+++++||+||.|.++.++..|+++++|..+..++|++.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34568999999999999999999999875332 2358999999999999999999999999999999999988754
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.15 E-value=0.00089 Score=62.25 Aligned_cols=71 Identities=28% Similarity=0.427 Sum_probs=45.1
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC-----CccCCceEEEEecC
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR-----SDIAGKRIKLEPSR 350 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG-----~~i~Gr~I~V~~s~ 350 (823)
.|.|.+++..++.++|++.|+.||.|..|.+... ...|+|+|.+.++|++|+..+.- ..|.+..++++.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 5789999999999999999999999999998643 34799999999999999987753 36667776666543
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.03 E-value=0.00077 Score=73.42 Aligned_cols=170 Identities=15% Similarity=0.196 Sum_probs=110.3
Q ss_pred CCCCCCCCCcchhHhhhcCccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc---c
Q 003400 95 NPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---G 168 (823)
Q Consensus 95 ~~~i~n~LP~d~d~l~~~v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~---~ 168 (823)
...++++....+. .+....++++++-..+++.++..++...|.. .+.+.......+++..+.|....... .
T Consensus 72 ~~~~~~~s~~~~~---~~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~ 148 (285)
T KOG4210|consen 72 LSEEDSLSSKEEL---RGSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE 148 (285)
T ss_pred hhhcccccCCccc---ccccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH
Confidence 3445555553322 2456789999999999999888888888854 22222223334455555544332111 1
Q ss_pred ccc-ccc---------CCCCcccc-CCC-CCCCCCCcEEE-EcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCccc
Q 003400 169 LLH-YSV---------PNGAGTVA-GEH-PYGEHPSRTLF-VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRG 230 (823)
Q Consensus 169 ~~~-~~l---------~n~~~~~~-~~~-~~~e~~srtLf-V~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG 230 (823)
+.. +.+ ....+... ... .....+..++| |++|+.++++++|+..|..+|.|..+++ ++..+|
T Consensus 149 ~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg 228 (285)
T KOG4210|consen 149 ESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKG 228 (285)
T ss_pred hhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhh
Confidence 111 011 00011000 000 11122344555 9999999999999999999999999983 567899
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 231 FVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 231 ~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
||+|.|.+...+..++.. +...+.++++.+.+..+..
T Consensus 229 ~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 229 FAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 999999999999999987 8888999999999886643
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.79 E-value=0.0038 Score=67.35 Aligned_cols=76 Identities=21% Similarity=0.441 Sum_probs=62.5
Q ss_pred ccceeeecCCCCCCHHHH------HHHhcccCceEEEEeCCCc------ccE--EEEEEcCHHHHHHHHHHhCCCccCCc
Q 003400 277 QGTLVVFNLDPSVSNEDL------RQIFGAYGEVKEIRETPHK------RHH--KFIEFYDVRAAEAALKSLNRSDIAGK 342 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL------~~~Fs~fG~I~~iri~~~s------rG~--aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (823)
..-+||-+|++.+-.|++ .++|++||+|+.|.+..+. .+. .+|+|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 346899999999877762 4899999999999764331 122 39999999999999999999999999
Q ss_pred eEEEEecCCC
Q 003400 343 RIKLEPSRPG 352 (823)
Q Consensus 343 ~I~V~~s~~~ 352 (823)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987543
No 154
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.78 E-value=0.00049 Score=81.92 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=109.2
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEEE---eccCccCcccceeEeeecCccccccccccccCCCCccccCCCCCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMEL---EGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEH 190 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v~V---~~d~~es~~~g~~~v~~~e~~~a~~~~~~~l~n~~~~~~~~~~~~e~ 190 (823)
..+.|+++|+..+.+.++...|..+|.+.+ ..-..+..-+|++++.|.+...+.....+... .. -
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~----~~--------~ 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS----CF--------F 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh----hh--------h
Confidence 345899999999999999999999998722 12234556678888877776554433222211 01 1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
.+..|+|+|.|...|.++|+.++..+|.+.++. ..++.+|.|+|.|.+..+|.+++...+...+..+.+.|..+.|
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 257899999999999999999999999999886 3678899999999999999999998888777777777777665
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.42 E-value=0.0028 Score=70.12 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=79.5
Q ss_pred cceeeecCCCCCCHHHHHHHhccc--CceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC-ccCCceEEEEecCCCcc
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-DIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~f--G~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~-~i~Gr~I~V~~s~~~~~ 354 (823)
..||++||.+.++..||+.+|... +.-..+- ...||+||.+.|..-|.+|++.++|+ ++.|+++.|+.+-++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 368999999999999999999754 1111111 24689999999999999999999997 89999999999988776
Q ss_pred cc--hhhhccccccCHHHHHHHHhhcCCC
Q 003400 355 RR--NLMLQLNQELEQDESRILQHQVGSP 381 (823)
Q Consensus 355 r~--~~~~ql~~~~~~~~l~~~f~~~GsP 381 (823)
+. ..+++..+++..+-+..+..+||.+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 53 3566777777777777777777755
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.38 E-value=0.0078 Score=48.95 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHH
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 246 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai 246 (823)
++.|-|.+.+++..+.- +..|..||+|..+... ....+.+|.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEV-LEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHH-HHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 36788999987776554 5588899999998765 45679999999999999985
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.36 E-value=0.0048 Score=66.58 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCCCCHHH----H--HHHhhcCCCEEEEEeCCCc------ccE--EEEEeCCHHHHHHHHHHhcCCcccc
Q 003400 191 PSRTLFVRNINSNVEDSE----L--RALFEQYGDIRTLYTACKH------RGF--VMISYYDIRAARTAMRALQNKPLRR 256 (823)
Q Consensus 191 ~srtLfV~NLP~~vteee----L--r~lFs~fG~I~~v~~~~ks------rG~--AFV~F~~~e~A~~Ai~~Lng~~l~g 256 (823)
...-+||-+||+.+..++ | .++|.+||.|..|.+..+. .+. +||.|.+.++|.+||.+.+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 346789999999988777 3 3799999999998753331 122 4999999999999999999999999
Q ss_pred ccccccccC
Q 003400 257 RKLDIHFSI 265 (823)
Q Consensus 257 r~L~V~~a~ 265 (823)
+-|+..|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998864
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.23 E-value=0.006 Score=67.97 Aligned_cols=66 Identities=33% Similarity=0.473 Sum_probs=55.6
Q ss_pred CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCC------------------cccEEEEEEcCHHHHHHHHHH
Q 003400 272 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 272 ~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~------------------srG~aFVeF~d~e~A~kAl~~ 333 (823)
.+....++|.+.|||.+-.-+-|.+||+.+|.|+.|||-.. .+-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457789999999999999999999999999999987221 145799999999999999998
Q ss_pred hCCC
Q 003400 334 LNRS 337 (823)
Q Consensus 334 LnG~ 337 (823)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 8644
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.21 E-value=0.0071 Score=63.53 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEE----EeCCCccc
Q 003400 240 RAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRH 315 (823)
Q Consensus 240 e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i----ri~~~srG 315 (823)
.-|+.|.++|++....++.|+|.|+.. +.|||.||..-++.+.|.+.|+.||.|... ...++..+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 357788888999999999999999842 579999999999999999999999987653 33456667
Q ss_pred EEEEEEcCHHHHHHHHHHhCC
Q 003400 316 HKFIEFYDVRAAEAALKSLNR 336 (823)
Q Consensus 316 ~aFVeF~d~e~A~kAl~~LnG 336 (823)
-++|+|...-.|.+|++.++-
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cchhhhhcchhHHHHHHHhcc
Confidence 899999999999999998753
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.21 E-value=0.0087 Score=48.68 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=42.7
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHH
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 331 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl 331 (823)
+.|.|.+.+.+..+. +...|..||+|..+.+. ......+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 357888888776644 55588899999999986 34678999999999999995
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.19 E-value=0.012 Score=54.77 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=39.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 252 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~ 252 (823)
..|.|.+++..++-++|++.|++||+|..|... +....|+|.|.+.++|++|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999998743 34558999999999999999987544
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.14 E-value=0.0048 Score=67.63 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=69.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEE-------------EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-------------RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i-------------ri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (823)
...++||.+|+..+++.+|.++|.++|.|+.= +++...++-|.|.|+|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 34699999999999999999999999988653 23566789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003400 343 RIKLEPSRPGG 353 (823)
Q Consensus 343 ~I~V~~s~~~~ 353 (823)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999887654
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.95 E-value=0.0047 Score=64.81 Aligned_cols=68 Identities=21% Similarity=0.408 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCC-------------Cccc----EEEEEeCCHHHHHHHHHHhcCCc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-------------KHRG----FVMISYYDIRAARTAMRALQNKP 253 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~-------------ksrG----~AFV~F~~~e~A~~Ai~~Lng~~ 253 (823)
..-.||+.+||+.+...-|+++|+.||.|-+|++.. .++. =|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 567899999999999999999999999999998422 1111 28899999999999999999999
Q ss_pred ccccc
Q 003400 254 LRRRK 258 (823)
Q Consensus 254 l~gr~ 258 (823)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.93 E-value=0.019 Score=53.01 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=52.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEE------------eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce-
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR- 343 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir------------i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~- 343 (823)
..-|.|.+.|+. ....|.+.|++||+|.+.. -.......--|+|+++.+|.+||+ -||..+.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456889999988 4567889999999998875 122346789999999999999998 5999999854
Q ss_pred EEEEecC
Q 003400 344 IKLEPSR 350 (823)
Q Consensus 344 I~V~~s~ 350 (823)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4467764
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.93 E-value=0.0077 Score=67.17 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=60.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCC------------------cccEEEEEeCCHHHHHHHHHHh
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK------------------HRGFVMISYYDIRAARTAMRAL 249 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k------------------srG~AFV~F~~~e~A~~Ai~~L 249 (823)
.+-++++|.+-|||.+-.-+-|.++|..+|.|..|++... .+-+|+|+|...+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458999999999999999999999999999999984211 2568999999999999999987
Q ss_pred cCCcccccccccc
Q 003400 250 QNKPLRRRKLDIH 262 (823)
Q Consensus 250 ng~~l~gr~L~V~ 262 (823)
+...-+..-|+|.
T Consensus 307 ~~e~~wr~glkvk 319 (484)
T KOG1855|consen 307 NPEQNWRMGLKVK 319 (484)
T ss_pred chhhhhhhcchhh
Confidence 6554444444443
No 166
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=95.83 E-value=0.0046 Score=68.44 Aligned_cols=73 Identities=19% Similarity=0.402 Sum_probs=60.4
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEee-eccccc-ceeEEEEEecCCcccHHHHHHHhcCCcccC
Q 003400 692 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP-IDFKNK-CNVGYAFINMLSPLHIIPFYEAFNGKKWEK 765 (823)
Q Consensus 692 d~rTt~MirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp-~d~~~~-~n~gyafin~~~~~~~~~f~~~f~g~~w~~ 765 (823)
+....|.||++|+++|...|+..||- +...+.|.|+- -|+... |-.+.|||||..+.++..|...|+|+..=.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 34567999999999999999999999 88888888765 555432 235669999999999999999999987754
No 167
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.66 E-value=0.011 Score=64.84 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-------------eCCCcccEEEEEeCCHHHHHHHHHHhcCCccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-------------~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~ 255 (823)
.....+|||-+||..+++.+|.++|.++|.|..=+ .+.+.|+-|.|.|.|...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34557999999999999999999999999886532 36678999999999999999999999999999
Q ss_pred cccccccccC
Q 003400 256 RRKLDIHFSI 265 (823)
Q Consensus 256 gr~L~V~~a~ 265 (823)
+.+|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999988774
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.025 Score=65.05 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=57.8
Q ss_pred CccceeeecCCCCCC------HHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC-CceE
Q 003400 276 NQGTLVVFNLDPSVS------NEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRI 344 (823)
Q Consensus 276 ~~~tLfV~NLp~~vt------eedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I 344 (823)
-...|+|.|+|.--. ..-|..+|+++|+|....+ .+..+||.|++|.+.++|+.|++.|||+.++ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 456889999885321 2346789999999988754 4568999999999999999999999999886 4677
Q ss_pred EEEe
Q 003400 345 KLEP 348 (823)
Q Consensus 345 ~V~~ 348 (823)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 6653
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.49 E-value=0.0072 Score=63.44 Aligned_cols=68 Identities=29% Similarity=0.523 Sum_probs=58.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCC-------------ccc----EEEEEEcCHHHHHHHHHHhCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-------------KRH----HKFIEFYDVRAAEAALKSLNRSD 338 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~-------------srG----~aFVeF~d~e~A~kAl~~LnG~~ 338 (823)
..+.||+++||+.+....|+++|+.||.|-.|.+.+. +.. -|.|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999865321 111 28999999999999999999999
Q ss_pred cCCce
Q 003400 339 IAGKR 343 (823)
Q Consensus 339 i~Gr~ 343 (823)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99965
No 170
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.38 E-value=0.034 Score=65.24 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=60.2
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceE-EE--E--eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVK-EI--R--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~-~i--r--i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
.|-+.|+|++++-+||.++|..|-.+- +| | ..+...|-|.|-|++.++|.+|...|+++.|..++|+|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 688999999999999999999995331 22 2 2566788999999999999999999999999999998864
No 171
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.89 E-value=0.051 Score=50.13 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE------------eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccc-
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 257 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~------------~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr- 257 (823)
..+-|.|-+.|+. ....|.+.|++||+|.+.. ..........|.|.++.+|++|++ .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567888899987 6677888999999998875 123455689999999999999999 499998875
Q ss_pred ccccccc
Q 003400 258 KLDIHFS 264 (823)
Q Consensus 258 ~L~V~~a 264 (823)
-+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 3445555
No 172
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.80 E-value=0.18 Score=47.36 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=66.6
Q ss_pred cceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEE
Q 003400 693 TRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVA 772 (823)
Q Consensus 693 ~rTt~MirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~s~k~~ 772 (823)
.+|+|-+=-+|+.++..+++..+-+.+.....-+.+--|.. -|.-=+-|-|.+..+|..||+.|||++.+.... -+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 44666666899999988777777777777777666666644 465569999999999999999999999988765 459
Q ss_pred EEEe-eecc
Q 003400 773 SLAY-ARIQ 780 (823)
Q Consensus 773 ~~~~-A~iQ 780 (823)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.75 E-value=0.084 Score=51.73 Aligned_cols=75 Identities=31% Similarity=0.414 Sum_probs=53.8
Q ss_pred CCccceeeecCCC-----CCCH----HHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 275 LNQGTLVVFNLDP-----SVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 275 ~~~~tLfV~NLp~-----~vte----edL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
...+|+.|.=+.+ ..-. .+|-+.|..||+|.-+|+.+ +.-+|+|.+-+.|.+|+. |+|.++.|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 3556777775551 1222 36788999999999999875 457999999999999998 899999999999
Q ss_pred EEecCCCc
Q 003400 346 LEPSRPGG 353 (823)
Q Consensus 346 V~~s~~~~ 353 (823)
|+...+.-
T Consensus 101 i~LKtpdW 108 (146)
T PF08952_consen 101 IRLKTPDW 108 (146)
T ss_dssp EEE-----
T ss_pred EEeCCccH
Confidence 99876653
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.74 E-value=0.015 Score=61.35 Aligned_cols=61 Identities=31% Similarity=0.405 Sum_probs=49.5
Q ss_pred HHHHHHhc-ccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 292 EDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 292 edL~~~Fs-~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
++|...|+ +||+|+++.+- ..-.|-++|.|...++|++|+..||+..+.|++|..+++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 44555555 89999988542 234678999999999999999999999999999999987543
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.34 E-value=0.14 Score=57.91 Aligned_cols=81 Identities=30% Similarity=0.349 Sum_probs=70.5
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003400 694 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 773 (823)
Q Consensus 694 rTt~MirNIPnk~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 773 (823)
-|+|-|=-||+.+|..+|+..+.....---|+--++ | .--|.--+-|-|.+..+|..||+.|||+.++....+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 589999999999999999999998888888888888 3 344545599999999999999999999999887766 999
Q ss_pred EEeee
Q 003400 774 LAYAR 778 (823)
Q Consensus 774 ~~~A~ 778 (823)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.30 E-value=0.08 Score=56.67 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=49.5
Q ss_pred HHHHHHHhcccCceEEEEeCC---Cc---ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 291 NEDLRQIFGAYGEVKEIRETP---HK---RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 291 eedL~~~Fs~fG~I~~iri~~---~s---rG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
++++++.+++||+|..|-|.. .. .--.||+|...++|.+|+-.|||+.|+|+.++..|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 467889999999998885421 11 11379999999999999999999999999999887643
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.24 E-value=0.083 Score=60.91 Aligned_cols=70 Identities=20% Similarity=0.392 Sum_probs=54.8
Q ss_pred CcEEEEcCCCCCCC------HHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccc-ccccc
Q 003400 192 SRTLFVRNINSNVE------DSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLD 260 (823)
Q Consensus 192 srtLfV~NLP~~vt------eeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~-gr~L~ 260 (823)
...|+|.|+|.--. ..-|..+|+++|+|..++. .+..+||.|++|.+.++|+.|++.|+|..|. .+++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 46788888885322 2236689999999998873 4668999999999999999999999998875 44444
Q ss_pred c
Q 003400 261 I 261 (823)
Q Consensus 261 V 261 (823)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.65 E-value=0.031 Score=58.97 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=47.6
Q ss_pred HHHHHHhh-cCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 207 SELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 207 eeLr~lFs-~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
++|...|+ +||+|+.+++ ...-.|-++|.|...++|++|+..|++..+.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 9999998853 2235678999999999999999999999999999998876
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.83 E-value=0.31 Score=47.38 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=57.6
Q ss_pred CCCCCCcEEEEcCCCCCCC-HHHHH---HHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVE-DSELR---ALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vt-eeeLr---~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
..+.+-.||.|+=|..++. .+||+ ..++.||+|.+|... .+-.|.|.|+|..+|-+|+.+++. ...|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 4566889999988877764 34444 556789999998544 456899999999999999999876 5567777777
Q ss_pred cc
Q 003400 263 FS 264 (823)
Q Consensus 263 ~a 264 (823)
|.
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 65
No 180
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.95 E-value=0.14 Score=55.86 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=57.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG--~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.-.+||+||-+.+|++||.+.....| .+.+++ ..+++||||+|...+..+.++.++.|-.+.|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 45799999999999999998887666 233332 57899999999999999999999999888888875444
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.82 E-value=0.6 Score=45.48 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=57.3
Q ss_pred CCCccceeeecCCCCC-CHHHH---HHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 274 DLNQGTLVVFNLDPSV-SNEDL---RQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~v-teedL---~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
+..-.||.|+=|...+ ..+|| .+..+.||.|.+|...| +.-|.|.|.|..+|.+|+.+++. ...|..+.+.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3455689998766665 23444 45567899999998876 45799999999999999999865 667888888886
Q ss_pred CC
Q 003400 350 RP 351 (823)
Q Consensus 350 ~~ 351 (823)
.+
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 43
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.68 E-value=0.12 Score=60.09 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=56.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhh-cCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs-~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l 254 (823)
.....+..|+|.||-.-.|.-+|+.++. ..|.|...++ .+-+..|||.|.+.++|..-..+|+|..+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhcccc
Confidence 3456789999999999999999999999 5667777654 34567899999999999999999998554
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.55 E-value=0.31 Score=52.30 Aligned_cols=75 Identities=19% Similarity=0.362 Sum_probs=56.2
Q ss_pred CCcEEEEcCC--CCCCC---HHHHHHHhhcCCCEEEEEeC-----CCc-ccEEEEEeCCHHHHHHHHHHhcCCccccccc
Q 003400 191 PSRTLFVRNI--NSNVE---DSELRALFEQYGDIRTLYTA-----CKH-RGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (823)
Q Consensus 191 ~srtLfV~NL--P~~vt---eeeLr~lFs~fG~I~~v~~~-----~ks-rG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L 259 (823)
+++.|.++|. +-.++ ++++++.+++||.|..|.+. ... .--.||+|...++|.+|+-.|+|+.|.|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3445666654 23344 45788999999999988642 111 2348999999999999999999999999998
Q ss_pred cccccC
Q 003400 260 DIHFSI 265 (823)
Q Consensus 260 ~V~~a~ 265 (823)
...|..
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887753
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.45 E-value=0.25 Score=56.23 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=58.6
Q ss_pred ceeeecCCCCC-CHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 279 TLVVFNLDPSV-SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 279 tLfV~NLp~~v-teedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
.|-+.-.+..+ +.++|...|.+||+|..|.+.-. .-.|.|+|.+..+|-+|-. ..+..|+++.|+|.|-.+..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 34444445554 56899999999999999987432 4569999999999988876 58999999999999998865
No 185
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.11 E-value=0.75 Score=40.97 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=41.8
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~Ln 335 (823)
...+|. .|.++...||.++|++||.|.-.-+.. .-|||...+.+.|..|++.+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 345565 899999999999999999987666643 459999999999999999885
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.02 E-value=0.35 Score=55.94 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=59.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhc--CCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--Ccccccc
Q 003400 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRK 258 (823)
Q Consensus 183 ~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~--fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng--~~l~gr~ 258 (823)
+++....+..+.|+++-||..+.+|+++.||+. +-++.+|...- ..--||+|++..||+.|.+.|.. +.|.|++
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~--N~nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--NDNWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--cCceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 333333445578899999999999999999984 77888886322 22378999999999999998865 4577887
Q ss_pred cccc
Q 003400 259 LDIH 262 (823)
Q Consensus 259 L~V~ 262 (823)
|...
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 7644
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.93 E-value=0.98 Score=40.25 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng 251 (823)
...+|. .|..+...||.++|+.||.|.--.+.. ..|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhcc
Confidence 456676 999999999999999999998766644 4699999999999999998754
No 188
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.62 E-value=0.52 Score=54.60 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=55.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcc--cCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGA--YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLE 347 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~--fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG--~~i~Gr~I~V~ 347 (823)
+.+.+.|+-|+..+..|+++.+|+. +-++++|.+.-. .--||+|++..||+.|.+.|.. ++|.||.|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4567888999999999999999985 678888876422 2369999999999999988863 46777776543
No 189
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.30 E-value=0.66 Score=47.59 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=45.8
Q ss_pred CHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEEEecCCCc
Q 003400 290 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 290 teedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~Ln--G~~i~Gr~I~V~~s~~~~ 353 (823)
..+.|+++|..|+.+......+. -+-..|.|.+.++|.+|...|+ +..+.|..++|-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 35789999999998888765433 3348999999999999999999 999999999999986543
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.15 E-value=1.5 Score=36.95 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=40.6
Q ss_pred cceeeecCCCCCCHHHHHHHhccc----CceEEEEeCCCcccEEEEEEcCHHHHHHHHHHh
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAY----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 334 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~f----G~I~~iri~~~srG~aFVeF~d~e~A~kAl~~L 334 (823)
..|+|.+++ +++.++|+.+|..| +. ..|.-... .-|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 479999986 58889999999998 42 33432222 24889999999999999875
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.08 E-value=0.41 Score=48.74 Aligned_cols=77 Identities=8% Similarity=0.056 Sum_probs=50.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCE---EEEE--e-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccc-
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 257 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~-fG~I---~~v~--~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr- 257 (823)
....+|.||+||+++|++++.+.+.. +++- ..+. . ......-|||.|.+.+++......++|..|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999998887 6765 3332 1 111234699999999999999999999877543
Q ss_pred ----cccccccCC
Q 003400 258 ----KLDIHFSIP 266 (823)
Q Consensus 258 ----~L~V~~a~p 266 (823)
...|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 334566543
No 192
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.01 E-value=0.38 Score=52.68 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=59.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccC--ceEEE-----EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG--~I~~i-----ri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
.-++||+||-+.+|++||.+.....| .+.++ |..++++|||+|-..+..+..+-++.|-.++|.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34799999999999999998887666 23333 457889999999999999999999999999999976665543
No 193
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=88.77 E-value=0.31 Score=56.74 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=63.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhc-ccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc---CCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs-~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i---~Gr~I~V~~s~~ 351 (823)
..+.|+|.||-...|.-+|+.++. ..|.|.+..+. +-+.+|||.|.+.++|...+.+|||... +++.|.+.|...
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHH-HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 346899999999999999999999 45666666443 3456899999999999999999999854 358999999865
Q ss_pred Cc
Q 003400 352 GG 353 (823)
Q Consensus 352 ~~ 353 (823)
..
T Consensus 522 de 523 (718)
T KOG2416|consen 522 DE 523 (718)
T ss_pred hH
Confidence 43
No 194
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=88.68 E-value=0.75 Score=45.20 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=51.5
Q ss_pred CCcEEEEcCCC-----CCCCH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 191 PSRTLFVRNIN-----SNVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 191 ~srtLfV~NLP-----~~vte----eeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
+..||.|.=+. ...-+ .+|.+.|..||+|.-++.. .+.-+|.|.+-+.|-+|+. ++|..+.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 55677776554 11223 3677889999998877642 3568999999999999999 8999999999999
Q ss_pred cccCC
Q 003400 262 HFSIP 266 (823)
Q Consensus 262 ~~a~p 266 (823)
....|
T Consensus 102 ~LKtp 106 (146)
T PF08952_consen 102 RLKTP 106 (146)
T ss_dssp EE---
T ss_pred EeCCc
Confidence 87654
No 195
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.28 E-value=0.46 Score=52.88 Aligned_cols=71 Identities=23% Similarity=0.529 Sum_probs=57.6
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeCCC--------cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~--------srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
+.|.|.||.+.+|.++++.+|.-.|+|.++++.+. ..-.|||.|.|...+..|.. |..+.+=++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47899999999999999999999999999987552 23479999999999888876 5666666666666554
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=87.97 E-value=2.2 Score=35.99 Aligned_cols=53 Identities=21% Similarity=0.438 Sum_probs=41.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC----CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHh
Q 003400 193 RTLFVRNINSNVEDSELRALFEQY----GDIRTLYTACKHRGFVMISYYDIRAARTAMRAL 249 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~f----G~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~L 249 (823)
.+|+|+++. +++.++|+.+|..| +...-=++... -|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 579999995 69999999999999 54332224332 4789999999999999864
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.14 E-value=2.5 Score=45.85 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=55.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce-EEEEecCCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR-IKLEPSRPG 352 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~-I~V~~s~~~ 352 (823)
+.=|.|.+.++.-. .-|..+|++||.|.+.... .+..+-.|+|.++-+|.+||. -||+.|+|.. |-|+.+..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 44577778876544 4577899999999887654 566799999999999999998 4899999844 446654443
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.62 E-value=0.66 Score=51.00 Aligned_cols=77 Identities=16% Similarity=0.320 Sum_probs=60.2
Q ss_pred ccceeeecCCCCCCHHHH-H--HHhcccCceEEEEeCCCc--------ccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 277 QGTLVVFNLDPSVSNEDL-R--QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL-~--~~Fs~fG~I~~iri~~~s--------rG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
..-+||-+|+..+..+.+ + +.|.+||.|..|...... ..-++|+|...++|..||...+|...+|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 346788888887755444 3 688999999999764321 11389999999999999999999999999988
Q ss_pred EEecCCCc
Q 003400 346 LEPSRPGG 353 (823)
Q Consensus 346 V~~s~~~~ 353 (823)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88776654
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.41 E-value=0.79 Score=50.44 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=58.8
Q ss_pred CcEEEEcCCCCCCCHHHHH---HHhhcCCCEEEEEeCCCc------cc--EEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 192 SRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTACKH------RG--FVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr---~lFs~fG~I~~v~~~~ks------rG--~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
.+-+||-+|+..+.++++. +.|.+||.|..|.+.... .+ -++|.|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888898887655544 588899999998743311 11 389999999999999999999999999988
Q ss_pred ccccCC
Q 003400 261 IHFSIP 266 (823)
Q Consensus 261 V~~a~p 266 (823)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 887654
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.15 E-value=2.4 Score=43.55 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=44.6
Q ss_pred CHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc--CCccccccccccccCC
Q 003400 205 EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIP 266 (823)
Q Consensus 205 teeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Ln--g~~l~gr~L~V~~a~p 266 (823)
..+.|+++|..|+.+..+... ++-+-..|.|.+.++|.+|...|+ +..+.|..+++.|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999998887543 344558899999999999999999 8999999999998844
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=78.03 E-value=1.2 Score=50.85 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCCCcEEEEcCCCCCC-CHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 188 GEHPSRTLFVRNINSNV-EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~v-teeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
.....+.|-+.-+|... |-++|...|.+||+|..|.+... --.|.|+|.+..+|-+|.. ..+..|.++.|+|.|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 45567788888888876 56899999999999999976443 4569999999999977776 589999999999999876
Q ss_pred CC
Q 003400 267 KD 268 (823)
Q Consensus 267 k~ 268 (823)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.31 E-value=1.6 Score=52.99 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=60.3
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc--CCceEEEEecCCC
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI--AGKRIKLEPSRPG 352 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i--~Gr~I~V~~s~~~ 352 (823)
+.++.|.+-..+-.-|..+|++||.|.+++... .-..|.|+|...+.|..|+.+|+|+++ -|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 455666666778889999999999999998632 235799999999999999999999965 4788999988753
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.20 E-value=3.3 Score=45.05 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=49.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccc
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr 257 (823)
..=|-|-+.|+. ...-|..+|++||+|.+.. +.....+-.|.|.+.-+|++|+.+ +|+.|.|.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 345666677764 3456778999999999985 446667999999999999999994 78777654
No 204
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=76.84 E-value=2.4 Score=45.13 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=51.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQN 251 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng 251 (823)
..|||.||..-+.-+.|..-|+.||+|.... ...+..+-++|.|...-.|.+|.+.+.-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 7899999999999999999999999987633 3566777899999999999999997643
No 205
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=75.12 E-value=3.8 Score=39.84 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=71.6
Q ss_pred CCHHHHHHHhh----cCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCC--Cc
Q 003400 204 VEDSELRALFE----QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDL--NQ 277 (823)
Q Consensus 204 vteeeLr~lFs----~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~--~~ 277 (823)
.+-..|...+. ..|.+.-. .-..++..++|.+.+++.++++ .....+.+..+.++.-.|...+..... ..
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~---~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~ 104 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIR---DLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIP 104 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEE---EeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccc
Confidence 45555555444 44444433 3356899999999999999988 355567788788776655444333222 12
Q ss_pred cceeeecCCCC-CCHHHHHHHhcccCceEEEEeC
Q 003400 278 GTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRET 310 (823)
Q Consensus 278 ~tLfV~NLp~~-vteedL~~~Fs~fG~I~~iri~ 310 (823)
-=|.|.|||.. .+++-|+++-+.+|++..+...
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 34777899987 5888999999999999999764
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.12 E-value=13 Score=32.19 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=35.2
Q ss_pred CCCHHHHHHHhcccC-----ceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 288 SVSNEDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 288 ~vteedL~~~Fs~fG-----~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
.++..+|..++..-+ .|-.|++. ..|+||+-.. +.|.+++..|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567778888877654 45566764 4589999876 4789999999999999999999864
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.18 E-value=26 Score=32.98 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEEe--CC-CcccEEEEEeCCHHHHHHHHHHhcCCcccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT--AC-KHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~--~~-ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g 256 (823)
.+..+.+...|.-++.++|..+.+.+-+ |..+++ .+ .++=-+.++|.+.++|+...+.+||+.+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3455555555566666777777666643 445553 22 244469999999999999999999998753
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=70.23 E-value=10 Score=32.40 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=42.0
Q ss_pred CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 203 NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 203 ~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.++-++++..+..|+-..-+ . ...| =||.|.+.++|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~-~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIR-D--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEE-e--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57889999999999754322 1 2234 488999999999999999998887666543
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=69.08 E-value=3.5 Score=49.14 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=61.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
..-++||+|+-..+.++-++.+...+|.|.++.... |||.+|.++..+.+|+..|+-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345899999999999999999999999999886542 999999999999999999998999988877665
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=67.64 E-value=2.8 Score=51.08 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=59.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccc--cccccccccCCC
Q 003400 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPK 267 (823)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~--gr~L~V~~a~pk 267 (823)
+.++-|.+-..+-.-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+.+|+|+++- |-+.+|.++++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4445566667888899999999999999874 234567999999999999999999998864 778888888654
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=66.55 E-value=4.3 Score=36.67 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=43.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCc--cccccccccccCCCCC-----CCCCCCCccceeeecCCCCCCHHHHHHHhc
Q 003400 232 VMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIPKDN-----PSDKDLNQGTLVVFNLDPSVSNEDLRQIFG 299 (823)
Q Consensus 232 AFV~F~~~e~A~~Ai~~Lng~~--l~gr~L~V~~a~pk~~-----~~~~~~~~~tLfV~NLp~~vteedL~~~Fs 299 (823)
|+|+|.+..-|++.++. .... +.+..+.|....-... ........++|.|.|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999883 2222 3444444443211110 011234567999999999999999987753
No 212
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=62.04 E-value=5.5 Score=47.52 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
.+.-++||+|+-..+..+-++.+...+|-|.+++... |+|..|.....+.+|+..+.-..+.+..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567999999999999999999999999999875322 999999999999999999988888888776654
No 213
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=61.11 E-value=12 Score=38.01 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=50.1
Q ss_pred ceeeecCCCCC-C----HHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEEEecCCC
Q 003400 279 TLVVFNLDPSV-S----NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 352 (823)
Q Consensus 279 tLfV~NLp~~v-t----eedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr-~I~V~~s~~~ 352 (823)
++.+.+++..+ + ......+|.+|.+....++. ++.+..-|-|.+.+.|+.|...+++..+.|+ .++.-++.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 45666666544 2 22334556555544333332 2345677899999999999999999999998 8888888765
Q ss_pred c
Q 003400 353 G 353 (823)
Q Consensus 353 ~ 353 (823)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 3
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=59.93 E-value=88 Score=34.39 Aligned_cols=145 Identities=15% Similarity=0.278 Sum_probs=90.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCC------------cccEEEEEeCCHHHHHHHHHH----hcC--
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK------------HRGFVMISYYDIRAARTAMRA----LQN-- 251 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~k------------srG~AFV~F~~~e~A~~Ai~~----Lng-- 251 (823)
--+|.|...||..+++--++...|.+||+|++|++... ......+.|-+.+.+-..... |..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999995332 245789999999887655432 222
Q ss_pred CccccccccccccCCC----C--CCCCCC----------------CCccceeeecCCCCC-CHHHHHHHhc---ccCc--
Q 003400 252 KPLRRRKLDIHFSIPK----D--NPSDKD----------------LNQGTLVVFNLDPSV-SNEDLRQIFG---AYGE-- 303 (823)
Q Consensus 252 ~~l~gr~L~V~~a~pk----~--~~~~~~----------------~~~~tLfV~NLp~~v-teedL~~~Fs---~fG~-- 303 (823)
..+....|.+.|..-+ . +..... ...+.|.|.= ...+ +++-+.+.+. .=+.
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCce
Confidence 2355667777664310 0 000000 0123555552 3344 3333333332 1132
Q ss_pred --eEEEEeCC-------CcccEEEEEEcCHHHHHHHHHHhC
Q 003400 304 --VKEIRETP-------HKRHHKFIEFYDVRAAEAALKSLN 335 (823)
Q Consensus 304 --I~~iri~~-------~srG~aFVeF~d~e~A~kAl~~Ln 335 (823)
|++|.+.. -.+.||.+.|-+..-|.+.+..|.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 34444311 146799999999999999988775
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=59.84 E-value=25 Score=30.16 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003400 288 SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (823)
Q Consensus 288 ~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V 346 (823)
.++-++++..+..|+- ..|+. ...| =||.|.+.++|+++.+..+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999974 34443 2345 489999999999999999999888777654
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=52.50 E-value=39 Score=29.17 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHhhcCCC-----EEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 202 SNVEDSELRALFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 202 ~~vteeeLr~lFs~fG~-----I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
..++..+|..++..-+. |-.|.+. ..|+||+-.. +.|+.+++.|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35788888888887653 5566553 3588888665 4788899999999999999998753
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.69 E-value=38 Score=39.08 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=53.1
Q ss_pred ccceeeecCCCCCCHHHHHHHhccc-CceEEEEeCCC---cccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~f-G~I~~iri~~~---srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (823)
...|+|-.+|..++-.||-.+...+ -.|..+++... .+-...|+|.+.++|..-.+.+||+.+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5689999999999999999998876 35566665322 34458999999999999999999998764
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.80 E-value=74 Score=37.91 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=59.6
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcC----CCEEEEEe---------------CCC------------------
Q 003400 186 PYGEHPSRTLFVRNINSN-VEDSELRALFEQY----GDIRTLYT---------------ACK------------------ 227 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~-vteeeLr~lFs~f----G~I~~v~~---------------~~k------------------ 227 (823)
+.....+++|-|-|+.++ |..++|.-+|..| |.|.+|.+ .+.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 344567899999999987 7889999998854 47888752 222
Q ss_pred -------------------cccEEEEEeCCHHHHHHHHHHhcCCccc--cccccccc
Q 003400 228 -------------------HRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHF 263 (823)
Q Consensus 228 -------------------srG~AFV~F~~~e~A~~Ai~~Lng~~l~--gr~L~V~~ 263 (823)
..=||.|+|.+++.|......+.|..+. +..|.+.|
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 0127999999999999999999999886 44555555
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=34.12 E-value=58 Score=35.43 Aligned_cols=48 Identities=8% Similarity=0.194 Sum_probs=37.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEE-EEEeCCCcccEEEEEeCCHH
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIR-TLYTACKHRGFVMISYYDIR 240 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~-~v~~~~ksrG~AFV~F~~~e 240 (823)
.+-|+|+||+.++.-.||+..+.+-|-+- ++ .-.-+.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~i-swkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSI-SWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeE-eeecCCcceeEecCCcc
Confidence 45799999999999999999998877442 22 23446788999998743
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.27 E-value=1.6e+02 Score=35.35 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=56.6
Q ss_pred CccceeeecCCCC-CCHHHHHHHhccc----CceEEEEe---------------CCC-----------------------
Q 003400 276 NQGTLVVFNLDPS-VSNEDLRQIFGAY----GEVKEIRE---------------TPH----------------------- 312 (823)
Q Consensus 276 ~~~tLfV~NLp~~-vteedL~~~Fs~f----G~I~~iri---------------~~~----------------------- 312 (823)
..++|-|-||+++ +.-++|.-+|..| |.|.+|.| .|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3568999999986 6889999998866 58888843 111
Q ss_pred --------------cccEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEec
Q 003400 313 --------------KRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPS 349 (823)
Q Consensus 313 --------------srG~aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~s 349 (823)
.--||.|+|.+++.|.+.-..++|.++.. ..|-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 12379999999999999999999998875 45555553
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.52 E-value=1.2e+02 Score=34.74 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=43.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCc-eEEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~-I~~iri~~~srG~aFVeF~d~e~A~kAl~~ 333 (823)
...|-|.++|.....+||...|+.|+. =-+|+.. -..++|-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWv--DdthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWV--DDTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEe--ecceeEEeecchHHHHHHhhc
Confidence 458999999999999999999999963 1222221 245799999999999999973
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.48 E-value=1.2e+02 Score=27.32 Aligned_cols=56 Identities=16% Similarity=0.382 Sum_probs=40.7
Q ss_pred ceeeecCCCCCCHHHHHHHhcc-cC-ceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHh
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSL 334 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~-fG-~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~L 334 (823)
+-|+.-.+...+..++++.++. || +|.+|+. .+...--|+|.+..-.+|.+....+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 5667778899999999999886 55 5666654 2223335999999988888776544
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=24.26 E-value=1.7e+02 Score=32.00 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=36.4
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCce-EEEEeCCCcccEEEEEEcCHH
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKFIEFYDVR 325 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I-~~iri~~~srG~aFVeF~d~e 325 (823)
.-|+++||+.++...||+..+.+-|-+ .++...+ ..+-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-CCcceeEecCCcc
Confidence 469999999999999999999887643 3444433 4677999998753
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.22 E-value=1.5e+02 Score=26.28 Aligned_cols=56 Identities=18% Similarity=0.396 Sum_probs=39.8
Q ss_pred ceeeecCCCCCCHHHHHHHhcc-cC-ceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHh
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSL 334 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~-fG-~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~L 334 (823)
+-|+..++...+..+|++.++. || +|..|+. .+...--|||++..-..|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 5677788999999999988886 55 5666653 2222235999998888777665443
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.17 E-value=1.4e+02 Score=26.77 Aligned_cols=54 Identities=7% Similarity=0.163 Sum_probs=39.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CEEEEEeCCCccc--EEEEEeCCHHHHHHHHHH
Q 003400 195 LFVRNINSNVEDSELRALFEQ-YG-DIRTLYTACKHRG--FVMISYYDIRAARTAMRA 248 (823)
Q Consensus 195 LfV~NLP~~vteeeLr~lFs~-fG-~I~~v~~~~ksrG--~AFV~F~~~e~A~~Ai~~ 248 (823)
-|+--++.+++..+|+..++. || .|.+|.+.....+ =|||.+....+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 444457889999999999986 56 6777764333333 599999998888876554
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=23.67 E-value=31 Score=37.22 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred ceeeecCCCCC------------CHHHHHHHhcccCceEEEEe----------CCCcccE--------------EEEEEc
Q 003400 279 TLVVFNLDPSV------------SNEDLRQIFGAYGEVKEIRE----------TPHKRHH--------------KFIEFY 322 (823)
Q Consensus 279 tLfV~NLp~~v------------teedL~~~Fs~fG~I~~iri----------~~~srG~--------------aFVeF~ 322 (823)
||++.+||-.+ +++.|+..|..||.|..|.+ +++..|. |||+|.
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfm 230 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFM 230 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHH
Q ss_pred CHHHHHHHHHHhCCCccCC--------ceEEEEecCCCcccchhhhccccccCHHHHHHHHh
Q 003400 323 DVRAAEAALKSLNRSDIAG--------KRIKLEPSRPGGARRNLMLQLNQELEQDESRILQH 376 (823)
Q Consensus 323 d~e~A~kAl~~LnG~~i~G--------r~I~V~~s~~~~~r~~~~~ql~~~~~~~~l~~~f~ 376 (823)
....-..|+.+|.|..+.- -.++|.|.+..--....+...+.+..+.+.-+..+
T Consensus 231 eykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhlsevqiakraeerrqieterlrq 292 (445)
T KOG2891|consen 231 EYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLSEVQIAKRAEERRQIETERLRQ 292 (445)
T ss_pred HHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhhhHHHHHHHHHHHhhhhHHHHhh
No 227
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.36 E-value=1.7e+02 Score=36.57 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=26.0
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHhhcCCCEE
Q 003400 189 EHPSRTLFVRNINSNV-EDSELRALFEQYGDIR 220 (823)
Q Consensus 189 e~~srtLfV~NLP~~v-teeeLr~lFs~fG~I~ 220 (823)
.-++|||+|..||.++ ++++|.++|.+.+..+
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~ 237 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLKVGE 237 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcCeee
Confidence 3478999999999885 6788999999876443
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=21.67 E-value=1.3e+02 Score=25.48 Aligned_cols=18 Identities=44% Similarity=0.896 Sum_probs=16.1
Q ss_pred HHHHHHhhcCCCEEEEEe
Q 003400 207 SELRALFEQYGDIRTLYT 224 (823)
Q Consensus 207 eeLr~lFs~fG~I~~v~~ 224 (823)
++||++|+..|+|..+++
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999998874
No 229
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.39 E-value=56 Score=29.65 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhh
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFE 214 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs 214 (823)
....++|.|.|||..+++++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34679999999999999999998765
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=20.38 E-value=1e+02 Score=29.32 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=25.1
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhcCCCEE--EEEeCCCcccEEEEEeCCHH
Q 003400 194 TLFVRNINSN---------VEDSELRALFEQYGDIR--TLYTACKHRGFVMISYYDIR 240 (823)
Q Consensus 194 tLfV~NLP~~---------vteeeLr~lFs~fG~I~--~v~~~~ksrG~AFV~F~~~e 240 (823)
+++|-|++.. ++.++|++.|..|..++ .++-..-+.|++.|.|...-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCCh
Confidence 4455566443 35578999999998654 33345567899999997743
No 231
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.09 E-value=2e+02 Score=25.37 Aligned_cols=54 Identities=7% Similarity=0.134 Sum_probs=38.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CEEEEEeCC--CcccEEEEEeCCHHHHHHHHHH
Q 003400 195 LFVRNINSNVEDSELRALFEQ-YG-DIRTLYTAC--KHRGFVMISYYDIRAARTAMRA 248 (823)
Q Consensus 195 LfV~NLP~~vteeeLr~lFs~-fG-~I~~v~~~~--ksrG~AFV~F~~~e~A~~Ai~~ 248 (823)
-|+-.++.+++..+|+..++. || +|..|.+.. ...--|||.+..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 455568899999999999986 55 567776322 2333599999888888765443
Done!