Query 003400
Match_columns 823
No_of_seqs 686 out of 3326
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 23:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.3E-31 4.3E-36 285.7 21.5 237 114-360 22-272 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 4.3E-31 1.5E-35 282.8 20.4 230 114-352 41-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.1E-29 3.8E-34 260.7 16.3 166 189-356 12-185 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 1.8E-28 6.1E-33 238.5 18.3 157 193-351 1-166 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 5E-28 1.7E-32 236.4 19.0 155 191-349 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 5.4E-28 1.9E-32 235.3 18.7 155 191-349 1-167 (167)
7 2qfj_A FBP-interacting repress 100.0 1.2E-27 4.1E-32 243.6 18.2 163 191-353 27-206 (216)
8 2adc_A Polypyrimidine tract-bi 100.0 2.5E-27 8.4E-32 245.9 20.8 164 189-352 31-228 (229)
9 1l3k_A Heterogeneous nuclear r 99.9 2.3E-27 7.8E-32 237.8 18.0 167 187-355 8-186 (196)
10 3pgw_A U1-A; protein-RNA compl 99.9 3.6E-27 1.2E-31 251.1 20.6 164 188-351 5-282 (282)
11 1fje_B Nucleolin RBD12, protei 99.9 5E-28 1.7E-32 238.9 12.1 162 188-352 9-174 (175)
12 2g4b_A Splicing factor U2AF 65 99.9 2.8E-27 9.7E-32 232.3 17.0 154 190-349 2-171 (172)
13 3tyt_A Heterogeneous nuclear r 99.9 3.5E-27 1.2E-31 241.8 17.6 159 191-349 3-204 (205)
14 3smz_A Protein raver-1, ribonu 99.9 5.6E-27 1.9E-31 249.8 19.8 178 190-379 20-210 (284)
15 1qm9_A Polypyrimidine tract-bi 99.9 2.1E-27 7.3E-32 239.5 15.6 162 191-352 2-197 (198)
16 3nmr_A Cugbp ELAV-like family 99.9 5.9E-27 2E-31 230.0 18.0 157 191-350 2-175 (175)
17 2cjk_A Nuclear polyadenylated 99.9 1.3E-27 4.5E-32 233.5 12.6 155 191-352 2-166 (167)
18 2yh0_A Splicing factor U2AF 65 99.9 7.2E-27 2.5E-31 234.6 16.6 162 191-354 3-196 (198)
19 2ghp_A U4/U6 snRNA-associated 99.9 2.5E-26 8.6E-31 245.7 17.3 182 186-379 35-236 (292)
20 3sde_A Paraspeckle component 1 99.9 5.5E-25 1.9E-29 232.8 18.7 156 190-356 20-183 (261)
21 4f02_A Polyadenylate-binding p 99.8 3E-19 1E-23 183.0 11.4 154 114-267 15-181 (213)
22 2i2y_A Fusion protein consists 99.8 4.6E-19 1.6E-23 171.9 11.7 127 226-353 10-149 (150)
23 2qfj_A FBP-interacting repress 99.8 2.2E-18 7.5E-23 175.0 15.0 157 114-270 28-208 (216)
24 2kn4_A Immunoglobulin G-bindin 99.8 3.2E-18 1.1E-22 166.9 14.6 130 225-354 9-152 (158)
25 1b7f_A Protein (SXL-lethal pro 99.8 2.3E-18 7.9E-23 167.7 13.0 151 114-264 3-168 (168)
26 3md3_A Nuclear and cytoplasmic 99.8 3.6E-18 1.2E-22 165.6 13.1 150 115-265 1-165 (166)
27 1fxl_A Paraneoplastic encephal 99.8 3.8E-18 1.3E-22 165.5 12.9 150 115-264 3-167 (167)
28 1l3k_A Heterogeneous nuclear r 99.8 4.3E-18 1.5E-22 170.3 13.1 156 114-270 13-186 (196)
29 3nmr_A Cugbp ELAV-like family 99.7 7.7E-18 2.6E-22 164.9 14.1 151 114-264 3-174 (175)
30 2cjk_A Nuclear polyadenylated 99.7 9.6E-19 3.3E-23 170.5 7.5 153 114-267 3-166 (167)
31 1fje_B Nucleolin RBD12, protei 99.7 1E-18 3.5E-23 172.0 6.0 154 114-267 13-174 (175)
32 4f25_A Polyadenylate-binding p 99.7 4.3E-18 1.5E-22 158.1 9.5 103 191-293 4-113 (115)
33 2g4b_A Splicing factor U2AF 65 99.7 2.3E-17 8E-22 161.4 10.2 148 114-264 4-171 (172)
34 2yh0_A Splicing factor U2AF 65 99.7 3.6E-17 1.2E-21 163.7 11.3 157 113-269 3-196 (198)
35 2adc_A Polypyrimidine tract-bi 99.7 8.4E-17 2.9E-21 166.6 14.0 151 114-267 34-228 (229)
36 1qm9_A Polypyrimidine tract-bi 99.7 9.7E-17 3.3E-21 161.4 13.1 151 114-267 3-197 (198)
37 3pgw_A U1-A; protein-RNA compl 99.7 1E-16 3.5E-21 170.2 12.9 75 191-265 206-281 (282)
38 4fxv_A ELAV-like protein 1; RN 99.6 6.3E-16 2.2E-20 139.9 9.7 76 276-351 18-98 (99)
39 3tyt_A Heterogeneous nuclear r 99.6 6.6E-16 2.3E-20 158.0 10.4 148 114-264 4-204 (205)
40 4fxv_A ELAV-like protein 1; RN 99.6 9E-16 3.1E-20 138.9 9.1 76 191-266 18-98 (99)
41 2lea_A Serine/arginine-rich sp 99.6 4.7E-16 1.6E-20 148.7 7.6 121 230-355 5-130 (135)
42 3lqv_A PRE-mRNA branch site pr 99.6 4.5E-16 1.5E-20 143.7 6.7 103 189-303 5-109 (115)
43 4f25_A Polyadenylate-binding p 99.6 2.3E-15 7.8E-20 139.7 9.7 80 277-356 5-87 (115)
44 3s8s_A Histone-lysine N-methyl 99.6 2.5E-15 8.7E-20 138.7 9.8 83 276-358 5-92 (110)
45 3sde_A Paraspeckle component 1 99.6 2.7E-15 9.4E-20 158.4 11.2 146 114-268 22-180 (261)
46 2hvz_A Splicing factor, argini 99.6 2.5E-15 8.4E-20 135.5 8.6 94 193-286 1-100 (101)
47 1sjq_A Polypyrimidine tract-bi 99.6 7.4E-15 2.5E-19 134.6 10.9 82 189-271 13-96 (105)
48 3r27_A HnRNP L, heterogeneous 99.6 6.7E-15 2.3E-19 133.7 9.3 80 188-268 17-98 (100)
49 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.5E-15 2.2E-19 145.1 9.7 123 234-356 11-156 (165)
50 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-14 4.3E-19 134.0 10.9 102 276-381 7-110 (115)
51 2lxi_A RNA-binding protein 10; 99.6 2.4E-15 8.2E-20 133.9 5.4 79 192-270 1-86 (91)
52 3s8s_A Histone-lysine N-methyl 99.5 1.1E-14 3.7E-19 134.4 10.0 78 189-266 3-85 (110)
53 1whw_A Hypothetical protein ri 99.5 1.8E-14 6E-19 129.3 11.1 82 189-270 5-91 (99)
54 1whw_A Hypothetical protein ri 99.5 1.9E-14 6.5E-19 129.1 11.3 80 275-354 6-90 (99)
55 2do4_A Squamous cell carcinoma 99.5 2.8E-14 9.6E-19 128.3 11.8 81 274-354 14-98 (100)
56 2ad9_A Polypyrimidine tract-bi 99.5 1.8E-14 6.1E-19 135.0 10.6 87 185-272 24-112 (119)
57 2dgv_A HnRNP M, heterogeneous 99.5 3.1E-14 1.1E-18 125.8 11.6 81 189-269 5-88 (92)
58 2lxi_A RNA-binding protein 10; 99.5 4.3E-15 1.5E-19 132.2 6.0 77 278-354 2-85 (91)
59 1x5u_A Splicing factor 3B subu 99.5 2.7E-14 9.2E-19 129.5 11.4 82 274-355 12-98 (105)
60 1wex_A Hypothetical protein (r 99.5 3.1E-14 1.1E-18 130.2 11.6 83 186-269 9-93 (104)
61 2cph_A RNA binding motif prote 99.5 3.9E-14 1.3E-18 128.7 12.0 82 273-354 11-99 (107)
62 1x5u_A Splicing factor 3B subu 99.5 3.7E-14 1.3E-18 128.6 11.7 83 187-269 10-97 (105)
63 2cph_A RNA binding motif prote 99.5 3.7E-14 1.3E-18 128.8 11.8 83 187-269 10-99 (107)
64 1x4a_A Splicing factor, argini 99.5 3.6E-14 1.2E-18 129.8 11.6 81 274-354 19-101 (109)
65 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.1E-14 7.1E-19 125.5 9.6 77 276-352 5-86 (87)
66 2dgs_A DAZ-associated protein 99.5 4.3E-14 1.5E-18 126.9 11.9 82 188-270 6-92 (99)
67 1x4a_A Splicing factor, argini 99.5 4.3E-14 1.5E-18 129.3 12.0 83 187-269 17-101 (109)
68 2d9p_A Polyadenylate-binding p 99.5 3.4E-14 1.2E-18 128.5 11.2 82 274-355 12-96 (103)
69 3r27_A HnRNP L, heterogeneous 99.5 2.2E-14 7.4E-19 130.3 9.8 77 276-353 20-98 (100)
70 2wbr_A GW182, gawky, LD47780P; 99.5 1.5E-14 5.1E-19 127.8 8.3 72 277-349 7-78 (89)
71 1sjq_A Polypyrimidine tract-bi 99.5 1.2E-14 4.2E-19 133.1 8.1 79 276-355 15-95 (105)
72 2dnz_A Probable RNA-binding pr 99.5 4.1E-14 1.4E-18 125.8 11.3 81 190-270 3-88 (95)
73 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.8E-14 6.1E-19 125.9 8.8 78 190-267 4-86 (87)
74 3md1_A Nuclear and cytoplasmic 99.5 2.9E-14 1E-18 123.4 10.0 76 278-353 2-82 (83)
75 2do4_A Squamous cell carcinoma 99.5 4E-14 1.4E-18 127.3 11.2 81 188-268 13-97 (100)
76 2cq0_A Eukaryotic translation 99.5 3.7E-14 1.3E-18 128.2 11.0 82 274-355 12-98 (103)
77 2lkz_A RNA-binding protein 5; 99.5 7.9E-15 2.7E-19 132.0 6.4 76 276-351 8-94 (95)
78 3md1_A Nuclear and cytoplasmic 99.5 2.8E-14 9.5E-19 123.5 9.6 77 192-268 1-82 (83)
79 2cq1_A PTB-like protein L; RRM 99.5 4.1E-14 1.4E-18 128.8 11.0 82 188-270 11-94 (101)
80 2x1f_A MRNA 3'-END-processing 99.5 2.5E-14 8.7E-19 127.8 9.5 78 191-268 1-83 (96)
81 2cqc_A Arginine/serine-rich sp 99.5 4.3E-14 1.5E-18 125.5 10.9 78 274-351 12-94 (95)
82 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.7E-14 1.6E-18 127.6 11.3 83 274-356 12-97 (103)
83 2dnm_A SRP46 splicing factor; 99.5 3E-14 1E-18 128.8 10.0 83 187-269 8-95 (103)
84 2dnq_A RNA-binding protein 4B; 99.5 5E-14 1.7E-18 124.4 11.1 79 189-270 5-83 (90)
85 2jvr_A Nucleolar protein 3; RN 99.5 1.9E-14 6.6E-19 133.2 8.8 90 257-353 15-106 (111)
86 2dgo_A Cytotoxic granule-assoc 99.5 5.4E-14 1.8E-18 129.7 11.8 82 274-355 12-98 (115)
87 2d9p_A Polyadenylate-binding p 99.5 5E-14 1.7E-18 127.4 11.3 83 188-270 11-96 (103)
88 2dgo_A Cytotoxic granule-assoc 99.5 6.3E-14 2.2E-18 129.3 12.1 83 188-270 11-98 (115)
89 2cpz_A CUG triplet repeat RNA- 99.5 3E-14 1E-18 131.6 9.9 81 275-355 23-108 (115)
90 2cq0_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 128.4 10.2 82 188-269 11-97 (103)
91 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.6E-14 1.2E-18 123.4 9.8 75 276-350 6-85 (85)
92 2dgs_A DAZ-associated protein 99.5 6.3E-14 2.2E-18 125.8 11.7 80 275-355 8-92 (99)
93 1p27_B RNA-binding protein 8A; 99.5 3E-14 1E-18 129.4 9.7 81 188-268 19-104 (106)
94 2cpf_A RNA binding motif prote 99.5 3E-14 1E-18 127.5 9.6 81 190-270 3-91 (98)
95 2dnz_A Probable RNA-binding pr 99.5 5.2E-14 1.8E-18 125.1 10.9 79 276-354 4-87 (95)
96 2cq3_A RNA-binding protein 9; 99.5 7.7E-14 2.6E-18 126.2 12.2 84 187-270 10-96 (103)
97 2dnh_A Bruno-like 5, RNA bindi 99.5 7.8E-14 2.7E-18 126.4 12.2 82 189-270 12-100 (105)
98 2x1f_A MRNA 3'-END-processing 99.5 4.7E-14 1.6E-18 126.0 10.5 78 277-354 2-84 (96)
99 2cqi_A Nucleolysin TIAR; RNA r 99.5 5.8E-14 2E-18 126.9 11.2 83 187-269 10-95 (103)
100 1why_A Hypothetical protein ri 99.5 6.5E-14 2.2E-18 125.3 11.4 78 276-354 16-95 (97)
101 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.3E-14 1.1E-18 123.7 9.1 77 189-265 4-85 (85)
102 2dnh_A Bruno-like 5, RNA bindi 99.5 7.1E-14 2.4E-18 126.7 11.6 81 275-355 13-100 (105)
103 1p27_B RNA-binding protein 8A; 99.5 3.6E-14 1.2E-18 128.9 9.6 80 274-353 20-104 (106)
104 2cpz_A CUG triplet repeat RNA- 99.5 3.5E-14 1.2E-18 131.1 9.7 83 188-270 21-108 (115)
105 4a8x_A RNA-binding protein wit 99.5 3.7E-14 1.3E-18 124.0 9.3 79 276-354 3-87 (88)
106 2cq1_A PTB-like protein L; RRM 99.5 7.4E-14 2.5E-18 127.1 11.6 80 275-355 13-94 (101)
107 2dnq_A RNA-binding protein 4B; 99.5 5.4E-14 1.9E-18 124.1 10.4 76 276-354 7-82 (90)
108 2dnm_A SRP46 splicing factor; 99.5 4.2E-14 1.4E-18 127.9 9.9 80 275-354 11-95 (103)
109 2e5h_A Zinc finger CCHC-type a 99.5 7.2E-14 2.5E-18 124.0 11.2 76 275-350 14-94 (94)
110 2jrs_A RNA-binding protein 39; 99.5 5.7E-14 2E-18 128.9 10.8 82 187-268 21-107 (108)
111 1x4d_A Matrin 3; structural ge 99.5 3.2E-14 1.1E-18 129.8 9.0 79 189-268 12-93 (102)
112 2cpf_A RNA binding motif prote 99.5 3.6E-14 1.2E-18 127.0 9.2 79 276-354 4-90 (98)
113 1x4h_A RNA-binding protein 28; 99.5 6.3E-14 2.2E-18 128.2 11.1 84 187-270 10-104 (111)
114 1oo0_B CG8781-PA, drosophila Y 99.5 4.7E-14 1.6E-18 129.1 10.1 81 275-355 24-109 (110)
115 1wf1_A RNA-binding protein RAL 99.5 3.6E-14 1.2E-18 130.1 9.4 95 255-353 6-101 (110)
116 1x4h_A RNA-binding protein 28; 99.5 9.1E-14 3.1E-18 127.1 12.0 81 275-355 13-104 (111)
117 1why_A Hypothetical protein ri 99.5 8.9E-14 3E-18 124.5 11.7 79 189-268 14-94 (97)
118 3pgw_S U1-70K; protein-RNA com 99.5 1.1E-14 3.9E-19 165.2 7.2 145 209-353 9-183 (437)
119 1x5s_A Cold-inducible RNA-bind 99.5 5E-14 1.7E-18 127.0 10.0 81 189-269 9-94 (102)
120 2fy1_A RNA-binding motif prote 99.5 7.9E-14 2.7E-18 129.6 11.6 78 276-353 6-87 (116)
121 2cqb_A Peptidyl-prolyl CIS-tra 99.5 4E-14 1.4E-18 127.7 9.2 81 275-355 10-95 (102)
122 2dgx_A KIAA0430 protein; RRM d 99.5 5.9E-14 2E-18 125.7 10.2 79 276-354 8-92 (96)
123 2dgv_A HnRNP M, heterogeneous 99.5 5.4E-14 1.8E-18 124.3 9.6 79 276-354 7-88 (92)
124 1wex_A Hypothetical protein (r 99.5 6.5E-14 2.2E-18 128.1 10.4 78 276-354 14-93 (104)
125 1x5s_A Cold-inducible RNA-bind 99.5 4E-14 1.4E-18 127.7 8.8 80 276-355 11-95 (102)
126 2dhg_A TRNA selenocysteine ass 99.5 1E-13 3.6E-18 125.3 11.6 81 189-269 6-92 (104)
127 2cq3_A RNA-binding protein 9; 99.5 1.1E-13 3.7E-18 125.1 11.7 81 274-354 12-95 (103)
128 1fjc_A Nucleolin RBD2, protein 99.5 3.5E-14 1.2E-18 126.6 8.3 82 274-355 13-94 (96)
129 2dgt_A RNA-binding protein 30; 99.5 5.9E-14 2E-18 124.4 9.6 81 187-270 5-85 (92)
130 1x5t_A Splicing factor 3B subu 99.5 3.5E-14 1.2E-18 126.5 8.2 81 190-270 3-89 (96)
131 3p5t_L Cleavage and polyadenyl 99.5 1.5E-14 5E-19 128.0 5.5 76 278-353 2-84 (90)
132 2la4_A Nuclear and cytoplasmic 99.5 4.4E-14 1.5E-18 127.3 8.8 76 190-266 25-100 (101)
133 2cqc_A Arginine/serine-rich sp 99.5 4.9E-14 1.7E-18 125.1 8.9 79 188-266 11-94 (95)
134 2dgp_A Bruno-like 4, RNA bindi 99.5 7.5E-14 2.6E-18 126.8 10.3 82 274-355 10-99 (106)
135 2dgp_A Bruno-like 4, RNA bindi 99.5 7E-14 2.4E-18 126.9 10.0 83 187-269 8-98 (106)
136 2ywk_A Putative RNA-binding pr 99.5 6.6E-14 2.2E-18 124.5 9.6 77 275-351 14-94 (95)
137 2ytc_A PRE-mRNA-splicing facto 99.5 7.1E-14 2.4E-18 121.7 9.6 79 186-265 6-85 (85)
138 2dgt_A RNA-binding protein 30; 99.5 9.2E-14 3.2E-18 123.1 10.4 78 274-354 7-84 (92)
139 2e5h_A Zinc finger CCHC-type a 99.5 6.5E-14 2.2E-18 124.3 9.4 78 188-265 12-94 (94)
140 2cqb_A Peptidyl-prolyl CIS-tra 99.5 4.4E-14 1.5E-18 127.4 8.4 82 189-270 9-95 (102)
141 2jrs_A RNA-binding protein 39; 99.5 8.5E-14 2.9E-18 127.8 10.5 80 274-353 23-107 (108)
142 2e5j_A Methenyltetrahydrofolat 99.5 5.3E-14 1.8E-18 126.1 8.9 79 275-353 17-95 (97)
143 1u6f_A Tcubp1, RNA-binding pro 99.5 1.2E-13 3.9E-18 131.8 11.8 82 274-355 39-125 (139)
144 2lkz_A RNA-binding protein 5; 99.5 2.2E-14 7.7E-19 129.0 6.4 78 189-266 6-94 (95)
145 1x4d_A Matrin 3; structural ge 99.5 4.3E-14 1.5E-18 128.9 8.3 76 276-352 14-92 (102)
146 2div_A TRNA selenocysteine ass 99.5 6.8E-14 2.3E-18 125.4 9.5 80 189-268 6-95 (99)
147 1x5t_A Splicing factor 3B subu 99.5 4.3E-14 1.5E-18 125.9 8.1 80 276-355 4-89 (96)
148 2ad9_A Polypyrimidine tract-bi 99.5 4.9E-14 1.7E-18 132.0 8.8 79 276-355 30-110 (119)
149 2ywk_A Putative RNA-binding pr 99.5 5.6E-14 1.9E-18 124.9 8.8 80 186-265 10-93 (95)
150 1wi8_A EIF-4B, eukaryotic tran 99.5 8.8E-14 3E-18 126.1 10.2 82 187-270 10-97 (104)
151 2jvo_A Nucleolar protein 3; nu 99.5 5.3E-14 1.8E-18 129.2 8.7 80 273-355 27-106 (108)
152 2wbr_A GW182, gawky, LD47780P; 99.5 3.7E-14 1.3E-18 125.2 7.3 73 191-264 6-78 (89)
153 2cpj_A Non-POU domain-containi 99.5 7.6E-14 2.6E-18 125.4 9.5 79 189-268 12-90 (99)
154 2dnp_A RNA-binding protein 14; 99.5 1E-13 3.4E-18 122.4 10.1 77 275-354 7-83 (90)
155 1wi8_A EIF-4B, eukaryotic tran 99.5 1.1E-13 3.8E-18 125.4 10.5 79 275-355 13-97 (104)
156 2xnq_A Nuclear polyadenylated 99.5 1.2E-13 4.1E-18 124.2 10.6 76 275-353 20-96 (97)
157 2kxn_B Transformer-2 protein h 99.5 9.2E-14 3.2E-18 131.8 10.3 82 187-268 41-127 (129)
158 3p5t_L Cleavage and polyadenyl 99.5 2.8E-14 9.7E-19 126.2 6.3 77 193-269 2-85 (90)
159 2kxn_B Transformer-2 protein h 99.5 1.1E-13 3.8E-18 131.2 10.8 79 275-353 44-127 (129)
160 2la6_A RNA-binding protein FUS 99.5 1E-13 3.6E-18 124.5 10.0 76 275-350 11-99 (99)
161 1oo0_B CG8781-PA, drosophila Y 99.5 7.4E-14 2.5E-18 127.8 9.1 82 187-268 21-107 (110)
162 1x4g_A Nucleolysin TIAR; struc 99.5 9.5E-14 3.2E-18 127.1 9.8 78 276-354 24-101 (109)
163 1fjc_A Nucleolin RBD2, protein 99.5 3.8E-14 1.3E-18 126.3 7.0 82 188-269 12-93 (96)
164 2kn4_A Immunoglobulin G-bindin 99.5 8.1E-14 2.8E-18 135.6 9.9 82 189-270 67-153 (158)
165 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.8E-18 120.4 9.7 76 274-350 9-85 (85)
166 2a3j_A U1 small nuclear ribonu 99.5 8.9E-14 3E-18 131.8 9.7 80 189-268 26-111 (127)
167 2fy1_A RNA-binding motif prote 99.5 1.1E-13 3.8E-18 128.6 10.3 81 189-269 4-88 (116)
168 4a8x_A RNA-binding protein wit 99.5 8.9E-14 3E-18 121.5 9.0 78 191-268 3-86 (88)
169 2e5j_A Methenyltetrahydrofolat 99.5 1.1E-13 3.8E-18 124.0 9.8 80 189-268 16-95 (97)
170 2a3j_A U1 small nuclear ribonu 99.5 9.4E-14 3.2E-18 131.6 9.8 80 276-355 28-113 (127)
171 2khc_A Testis-specific RNP-typ 99.5 1E-13 3.5E-18 128.5 9.9 77 274-350 37-118 (118)
172 3zzy_A Polypyrimidine tract-bi 99.5 4E-14 1.4E-18 134.5 7.2 77 278-354 29-108 (130)
173 2dgu_A Heterogeneous nuclear r 99.5 1.4E-13 4.7E-18 124.7 10.4 78 276-356 10-87 (103)
174 2cpi_A CCR4-NOT transcription 99.5 1.2E-13 4E-18 127.2 10.1 80 274-353 12-102 (111)
175 2err_A Ataxin-2-binding protei 99.5 7.2E-14 2.5E-18 128.3 8.6 80 273-352 25-107 (109)
176 2cpj_A Non-POU domain-containi 99.5 1.1E-13 3.7E-18 124.4 9.6 78 275-353 13-90 (99)
177 2la4_A Nuclear and cytoplasmic 99.5 5.5E-14 1.9E-18 126.7 7.7 76 276-352 26-101 (101)
178 2cpd_A Apobec-1 stimulating pr 99.5 2.3E-13 7.8E-18 122.3 11.7 77 275-354 13-91 (99)
179 1x4e_A RNA binding motif, sing 99.5 8.7E-14 3E-18 121.2 8.6 76 190-265 3-83 (85)
180 2dgu_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 125.0 9.9 79 189-270 8-86 (103)
181 2kvi_A Nuclear polyadenylated 99.5 8.6E-14 3E-18 124.5 8.8 79 189-270 7-86 (96)
182 2cqd_A RNA-binding region cont 99.5 1.9E-13 6.5E-18 126.4 11.3 83 187-270 12-99 (116)
183 2dhg_A TRNA selenocysteine ass 99.5 9.1E-14 3.1E-18 125.8 9.0 81 276-356 8-94 (104)
184 1x4f_A Matrin 3; structural ge 99.5 5.4E-14 1.8E-18 130.4 7.5 80 189-269 22-104 (112)
185 3ex7_B RNA-binding protein 8A; 99.5 1.1E-13 3.7E-18 129.8 9.7 84 187-270 17-105 (126)
186 2fc9_A NCL protein; structure 99.5 8.2E-14 2.8E-18 125.5 8.5 83 188-270 11-94 (101)
187 1x4g_A Nucleolysin TIAR; struc 99.5 1.5E-13 5.3E-18 125.7 10.4 81 189-270 22-102 (109)
188 1x4c_A Splicing factor, argini 99.5 1.9E-13 6.3E-18 125.1 10.9 80 188-269 11-95 (108)
189 1x4c_A Splicing factor, argini 99.5 1.7E-13 5.7E-18 125.4 10.5 77 276-354 14-95 (108)
190 2xnq_A Nuclear polyadenylated 99.5 1.5E-13 5E-18 123.6 10.0 77 188-267 18-95 (97)
191 2dh8_A DAZ-associated protein 99.5 1.4E-13 4.8E-18 124.8 9.8 83 187-270 11-98 (105)
192 2do0_A HnRNP M, heterogeneous 99.5 2.5E-13 8.7E-18 124.9 11.7 80 188-267 11-94 (114)
193 2dnp_A RNA-binding protein 14; 99.5 1.5E-13 5.1E-18 121.3 9.7 78 189-269 6-83 (90)
194 2khc_A Testis-specific RNP-typ 99.5 1.2E-13 4E-18 128.0 9.5 79 187-265 35-118 (118)
195 3ex7_B RNA-binding protein 8A; 99.5 1.2E-13 4.2E-18 129.4 9.7 81 275-355 20-105 (126)
196 1p1t_A Cleavage stimulation fa 99.5 3.8E-14 1.3E-18 128.1 6.0 80 189-268 5-89 (104)
197 1nu4_A U1A RNA binding domain; 99.5 9E-14 3.1E-18 124.0 8.3 80 189-268 5-90 (97)
198 2do0_A HnRNP M, heterogeneous 99.5 2.3E-13 8E-18 125.1 11.3 79 276-354 14-96 (114)
199 2dis_A Unnamed protein product 99.5 1.7E-13 5.7E-18 125.1 10.2 82 190-271 6-96 (109)
200 2jvo_A Nucleolar protein 3; nu 99.5 9.5E-14 3.2E-18 127.5 8.6 79 187-268 26-104 (108)
201 2fc9_A NCL protein; structure 99.5 1.2E-13 4.2E-18 124.3 9.2 81 274-354 12-93 (101)
202 3ns6_A Eukaryotic translation 99.5 4.8E-14 1.6E-18 127.4 6.4 78 190-267 4-93 (100)
203 2dgx_A KIAA0430 protein; RRM d 99.5 1.1E-13 3.9E-18 123.9 8.8 80 191-270 8-93 (96)
204 2cqd_A RNA-binding region cont 99.5 2E-13 6.9E-18 126.2 10.8 80 273-353 13-97 (116)
205 2dng_A Eukaryotic translation 99.5 2.3E-13 8E-18 123.1 11.0 79 275-355 13-96 (103)
206 2dng_A Eukaryotic translation 99.5 2E-13 6.8E-18 123.5 10.5 82 187-270 10-96 (103)
207 2cpe_A RNA-binding protein EWS 99.5 1.3E-13 4.3E-18 126.9 9.3 81 274-354 12-105 (113)
208 2la6_A RNA-binding protein FUS 99.5 1.5E-13 5.2E-18 123.4 9.6 77 188-264 9-98 (99)
209 2cq4_A RNA binding motif prote 99.5 4E-14 1.4E-18 130.5 6.0 78 275-353 23-105 (114)
210 1whx_A Hypothetical protein ri 99.5 1.1E-13 3.6E-18 127.8 8.7 76 276-352 9-84 (111)
211 3ucg_A Polyadenylate-binding p 99.5 1.5E-13 5E-18 120.5 9.2 76 276-352 5-85 (89)
212 1whx_A Hypothetical protein ri 99.5 6.6E-14 2.3E-18 129.1 7.3 77 189-266 7-83 (111)
213 3ns6_A Eukaryotic translation 99.5 5.1E-14 1.7E-18 127.3 6.3 76 277-352 6-93 (100)
214 2hvz_A Splicing factor, argini 99.5 5.8E-14 2E-18 126.5 6.6 76 278-353 1-76 (101)
215 2err_A Ataxin-2-binding protei 99.5 9.1E-14 3.1E-18 127.6 8.0 81 187-267 24-107 (109)
216 1u6f_A Tcubp1, RNA-binding pro 99.5 1.8E-13 6.1E-18 130.5 10.3 83 188-270 38-125 (139)
217 2cpe_A RNA-binding protein EWS 99.5 1.4E-13 4.8E-18 126.5 9.2 82 188-269 11-105 (113)
218 2fc8_A NCL protein; structure 99.5 2.1E-13 7.3E-18 122.9 10.2 83 273-355 11-95 (102)
219 1p1t_A Cleavage stimulation fa 99.5 8.6E-14 2.9E-18 125.8 7.6 81 276-356 7-92 (104)
220 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.1E-13 7.2E-18 132.8 10.9 80 276-355 38-122 (156)
221 2kvi_A Nuclear polyadenylated 99.5 1.1E-13 3.7E-18 123.9 8.1 77 275-354 8-85 (96)
222 2cpx_A Hypothetical protein FL 99.4 2.1E-13 7.1E-18 125.7 10.1 83 188-270 21-108 (115)
223 2cpd_A Apobec-1 stimulating pr 99.4 2.9E-13 1E-17 121.5 10.9 78 189-269 12-91 (99)
224 2m2b_A RNA-binding protein 10; 99.4 1.2E-13 4E-18 131.0 8.6 83 186-269 17-110 (131)
225 2lea_A Serine/arginine-rich sp 99.4 6.8E-14 2.3E-18 133.7 7.0 85 186-270 41-130 (135)
226 2cqp_A RNA-binding protein 12; 99.4 1.3E-13 4.4E-18 123.4 8.4 78 275-352 13-95 (98)
227 3ulh_A THO complex subunit 4; 99.4 1.9E-13 6.5E-18 124.3 9.6 78 188-265 25-106 (107)
228 2nlw_A Eukaryotic translation 99.4 1.8E-13 6.1E-18 124.7 9.4 77 276-352 14-100 (105)
229 2cqh_A IGF-II mRNA-binding pro 99.4 8.9E-14 3.1E-18 123.3 7.2 80 189-270 5-86 (93)
230 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9.1E-14 3.1E-18 125.4 7.3 77 275-353 17-99 (100)
231 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.1E-13 3.9E-18 124.8 7.9 79 188-268 15-99 (100)
232 1nu4_A U1A RNA binding domain; 99.4 1.1E-13 3.9E-18 123.4 7.8 79 276-354 7-91 (97)
233 2cpx_A Hypothetical protein FL 99.4 1.7E-13 5.8E-18 126.3 9.2 80 276-355 24-108 (115)
234 2i2y_A Fusion protein consists 99.4 2.5E-13 8.6E-18 131.4 10.8 81 188-268 69-149 (150)
235 2cqh_A IGF-II mRNA-binding pro 99.4 8.3E-14 2.8E-18 123.6 6.8 78 276-355 7-86 (93)
236 2jwn_A Embryonic polyadenylate 99.4 3.9E-14 1.3E-18 132.4 4.8 77 276-353 35-116 (124)
237 2div_A TRNA selenocysteine ass 99.4 1.4E-13 4.7E-18 123.4 8.2 78 276-353 8-95 (99)
238 3ulh_A THO complex subunit 4; 99.4 2.6E-13 8.9E-18 123.4 10.1 75 276-350 28-106 (107)
239 2krb_A Eukaryotic translation 99.4 1.9E-13 6.6E-18 118.2 8.7 71 192-262 1-81 (81)
240 1x5p_A Negative elongation fac 99.4 4.2E-13 1.4E-17 120.1 11.2 76 276-354 14-89 (97)
241 1x4f_A Matrin 3; structural ge 99.4 1.2E-13 4.1E-18 128.1 7.6 77 276-353 24-103 (112)
242 2rs2_A Musashi-1, RNA-binding 99.4 2.4E-13 8.2E-18 124.9 9.5 81 274-355 22-107 (109)
243 1wf1_A RNA-binding protein RAL 99.4 2.4E-13 8.1E-18 124.6 9.4 77 189-268 24-101 (110)
244 2fc8_A NCL protein; structure 99.4 2E-13 6.9E-18 123.0 8.8 83 188-270 11-95 (102)
245 2dh8_A DAZ-associated protein 99.4 2E-13 6.7E-18 123.9 8.8 80 274-354 13-97 (105)
246 2kt5_A RNA and export factor-b 99.4 6E-13 2.1E-17 124.5 12.3 79 275-353 33-115 (124)
247 2jvr_A Nucleolar protein 3; RN 99.4 1E-13 3.5E-18 128.4 6.8 77 190-266 26-104 (111)
248 3ucg_A Polyadenylate-binding p 99.4 2.1E-13 7E-18 119.6 8.4 76 191-267 5-85 (89)
249 1sjr_A Polypyrimidine tract-bi 99.4 2.1E-13 7.3E-18 134.2 9.4 77 277-353 46-125 (164)
250 1h2v_Z 20 kDa nuclear CAP bind 99.4 3.5E-13 1.2E-17 131.2 10.8 81 189-269 36-121 (156)
251 1s79_A Lupus LA protein; RRM, 99.4 2.3E-13 7.9E-18 124.1 8.9 77 274-351 8-88 (103)
252 1x5p_A Negative elongation fac 99.4 5.9E-13 2E-17 119.2 11.4 79 188-269 11-89 (97)
253 2mss_A Protein (musashi1); RNA 99.4 1.4E-13 4.7E-18 117.0 6.7 70 279-349 1-75 (75)
254 1x5o_A RNA binding motif, sing 99.4 6E-13 2.1E-17 122.5 11.6 80 188-267 21-112 (114)
255 2nlw_A Eukaryotic translation 99.4 2.9E-13 9.9E-18 123.3 9.3 80 188-267 11-100 (105)
256 2dis_A Unnamed protein product 99.4 2.9E-13 1E-17 123.4 9.3 79 276-354 7-94 (109)
257 2ek1_A RNA-binding protein 12; 99.4 1.2E-13 4E-18 122.8 6.4 76 276-351 14-94 (95)
258 3s7r_A Heterogeneous nuclear r 99.4 3.7E-13 1.3E-17 117.8 9.4 75 274-349 8-87 (87)
259 3n9u_C Cleavage and polyadenyl 99.4 1.6E-13 5.6E-18 134.4 8.0 78 276-353 54-138 (156)
260 1x5o_A RNA binding motif, sing 99.4 5.5E-13 1.9E-17 122.7 10.9 78 275-352 23-112 (114)
261 3s7r_A Heterogeneous nuclear r 99.4 2.9E-13 9.8E-18 118.4 8.4 76 188-264 7-87 (87)
262 2m2b_A RNA-binding protein 10; 99.4 1.3E-13 4.3E-18 130.7 6.6 79 274-353 20-109 (131)
263 1s79_A Lupus LA protein; RRM, 99.4 2.1E-13 7.3E-18 124.3 7.8 77 189-266 8-88 (103)
264 2cqp_A RNA-binding protein 12; 99.4 1.4E-13 4.9E-18 123.1 6.5 79 188-266 11-94 (98)
265 1x4b_A Heterogeneous nuclear r 99.4 1.8E-13 6.1E-18 126.5 7.3 78 276-354 26-108 (116)
266 1x4e_A RNA binding motif, sing 99.4 9.3E-14 3.2E-18 121.0 5.0 76 276-351 4-84 (85)
267 3n9u_C Cleavage and polyadenyl 99.4 2.1E-13 7.2E-18 133.6 8.0 78 190-267 53-137 (156)
268 2ek1_A RNA-binding protein 12; 99.4 1.2E-13 3.9E-18 122.9 5.6 77 189-265 12-93 (95)
269 3zzy_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 127.3 9.8 77 193-269 29-108 (130)
270 2krb_A Eukaryotic translation 99.4 1.5E-13 5.1E-18 119.0 6.0 69 278-346 2-80 (81)
271 2kt5_A RNA and export factor-b 99.4 5.1E-13 1.8E-17 125.0 10.1 82 188-269 31-116 (124)
272 2e44_A Insulin-like growth fac 99.4 7.6E-13 2.6E-17 117.9 10.7 78 276-353 14-93 (96)
273 1wg1_A KIAA1579 protein, homol 99.4 2.5E-13 8.6E-18 119.5 7.4 75 276-352 4-78 (88)
274 2cqg_A TDP-43, TAR DNA-binding 99.4 7.6E-13 2.6E-17 119.6 10.7 81 188-270 11-96 (103)
275 2e5i_A Heterogeneous nuclear r 99.4 5.1E-13 1.8E-17 126.0 9.9 74 279-353 27-103 (124)
276 2cpi_A CCR4-NOT transcription 99.4 2.4E-13 8.3E-18 125.1 7.5 80 189-268 12-102 (111)
277 1wg1_A KIAA1579 protein, homol 99.4 1.8E-13 6.1E-18 120.5 6.3 75 190-266 3-77 (88)
278 2ki2_A SS-DNA binding protein 99.4 1.1E-13 3.6E-18 122.0 4.8 75 278-353 2-81 (90)
279 2dgw_A Probable RNA-binding pr 99.4 5.8E-13 2E-17 117.6 9.5 77 275-353 8-88 (91)
280 2ki2_A SS-DNA binding protein 99.4 1.1E-13 3.7E-18 121.9 4.7 76 193-269 2-82 (90)
281 2rs2_A Musashi-1, RNA-binding 99.4 3.8E-13 1.3E-17 123.5 8.2 81 188-269 21-106 (109)
282 2mss_A Protein (musashi1); RNA 99.4 2.2E-13 7.6E-18 115.8 6.2 70 194-264 1-75 (75)
283 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 8.5E-13 2.9E-17 125.4 10.9 76 274-349 60-140 (140)
284 2dgw_A Probable RNA-binding pr 99.4 5.2E-13 1.8E-17 117.9 8.7 78 189-268 7-88 (91)
285 2cq2_A Hypothetical protein LO 99.4 4.5E-13 1.5E-17 124.4 8.5 78 188-266 21-105 (114)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 6.8E-13 2.3E-17 126.1 10.0 77 188-264 59-140 (140)
287 2cqg_A TDP-43, TAR DNA-binding 99.4 1.2E-12 4E-17 118.3 11.1 79 274-354 12-95 (103)
288 1fj7_A Nucleolin RBD1, protein 99.4 1.9E-13 6.5E-18 123.1 5.7 79 276-355 16-98 (101)
289 2cq4_A RNA binding motif prote 99.4 1.3E-13 4.6E-18 127.0 4.6 77 190-267 23-104 (114)
290 1wg5_A Heterogeneous nuclear r 99.4 8.5E-13 2.9E-17 120.0 9.9 79 189-268 12-95 (104)
291 2e44_A Insulin-like growth fac 99.4 9.6E-13 3.3E-17 117.2 9.9 79 190-268 13-93 (96)
292 2e5g_A U6 snRNA-specific termi 99.4 1.8E-12 6.1E-17 115.4 11.6 79 190-269 6-84 (94)
293 1fj7_A Nucleolin RBD1, protein 99.4 3E-13 1E-17 121.8 6.5 80 189-269 14-97 (101)
294 1wg5_A Heterogeneous nuclear r 99.4 1.3E-12 4.3E-17 118.8 10.6 78 275-353 13-95 (104)
295 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.7E-13 9.2E-18 115.6 5.6 71 278-349 1-76 (77)
296 1sjr_A Polypyrimidine tract-bi 99.4 1.2E-12 4.1E-17 128.9 10.7 79 192-270 46-127 (164)
297 2diu_A KIAA0430 protein; struc 99.4 1E-12 3.5E-17 117.2 9.1 75 190-269 6-86 (96)
298 3d2w_A TAR DNA-binding protein 99.4 1.1E-12 3.7E-17 116.2 9.3 76 275-354 9-86 (89)
299 3beg_B Splicing factor, argini 99.4 9.4E-13 3.2E-17 122.0 9.2 75 276-352 15-94 (115)
300 2jwn_A Embryonic polyadenylate 99.4 9.3E-13 3.2E-17 123.0 9.2 77 191-268 35-116 (124)
301 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.4E-13 8.3E-18 115.9 4.5 71 193-264 1-76 (77)
302 2diu_A KIAA0430 protein; struc 99.4 1.2E-12 4.2E-17 116.7 9.1 73 277-354 9-86 (96)
303 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1E-12 3.5E-17 129.4 9.5 84 186-269 66-154 (165)
304 1x4b_A Heterogeneous nuclear r 99.4 7.2E-13 2.4E-17 122.5 7.7 80 190-270 25-109 (116)
305 3d2w_A TAR DNA-binding protein 99.4 1.1E-12 3.9E-17 116.1 8.4 76 189-268 8-85 (89)
306 2cq2_A Hypothetical protein LO 99.4 1E-12 3.4E-17 122.1 8.2 76 276-352 24-106 (114)
307 2e5g_A U6 snRNA-specific termi 99.4 1.5E-12 5.1E-17 115.9 9.0 77 276-353 7-83 (94)
308 3egn_A RNA-binding protein 40; 99.4 1.2E-12 4E-17 125.6 8.9 81 189-269 42-132 (143)
309 3egn_A RNA-binding protein 40; 99.4 1.3E-12 4.3E-17 125.4 9.0 80 276-355 44-133 (143)
310 2hgl_A HNRPF protein, heteroge 99.3 5.6E-13 1.9E-17 127.7 6.1 77 276-353 43-126 (136)
311 2cpy_A RNA-binding protein 12; 99.3 5.8E-13 2E-17 123.1 5.9 78 275-353 13-95 (114)
312 2e5i_A Heterogeneous nuclear r 99.3 2.9E-12 1E-16 120.8 10.6 78 191-269 22-104 (124)
313 1wf0_A TDP-43, TAR DNA-binding 99.3 6.3E-13 2.1E-17 116.8 5.4 78 190-269 3-80 (88)
314 1wez_A HnRNP H', FTP-3, hetero 99.3 1.4E-12 4.7E-17 118.5 7.5 76 276-353 14-93 (102)
315 1wez_A HnRNP H', FTP-3, hetero 99.3 1.8E-12 6.2E-17 117.8 8.1 78 189-268 12-93 (102)
316 3beg_B Splicing factor, argini 99.3 2E-12 6.7E-17 119.9 8.4 72 190-263 14-85 (115)
317 2db1_A Heterogeneous nuclear r 99.3 9E-13 3.1E-17 122.8 6.1 76 276-352 16-98 (118)
318 1iqt_A AUF1, heterogeneous nuc 99.3 6.1E-13 2.1E-17 112.9 4.5 70 279-349 1-75 (75)
319 2cpy_A RNA-binding protein 12; 99.3 6.9E-13 2.4E-17 122.6 5.1 78 189-267 12-94 (114)
320 2hgn_A Heterogeneous nuclear r 99.3 6.4E-13 2.2E-17 127.8 5.0 120 230-354 2-125 (139)
321 1wel_A RNA-binding protein 12; 99.3 5.5E-13 1.9E-17 125.0 4.2 77 276-353 24-105 (124)
322 2lcw_A RNA-binding protein FUS 99.0 1.3E-13 4.6E-18 127.5 0.0 79 276-354 6-97 (116)
323 2lcw_A RNA-binding protein FUS 99.0 1.3E-13 4.6E-18 127.5 0.0 82 189-270 4-98 (116)
324 2xs2_A Deleted in azoospermia- 99.3 5.7E-13 1.9E-17 120.2 4.1 80 188-269 5-88 (102)
325 3q2s_C Cleavage and polyadenyl 99.3 1.3E-12 4.3E-17 136.0 7.1 78 276-353 67-151 (229)
326 2dnn_A RNA-binding protein 12; 99.3 3.3E-12 1.1E-16 117.8 8.9 74 276-351 15-92 (109)
327 1iqt_A AUF1, heterogeneous nuc 99.3 8.3E-13 2.8E-17 112.1 4.3 70 194-264 1-75 (75)
328 2lmi_A GRSF-1, G-rich sequence 99.3 1.1E-12 3.7E-17 119.9 5.3 78 275-353 9-93 (107)
329 2hzc_A Splicing factor U2AF 65 99.3 2.7E-12 9.4E-17 111.9 7.6 72 190-263 4-86 (87)
330 1wel_A RNA-binding protein 12; 99.3 6.1E-13 2.1E-17 124.7 3.4 77 189-266 22-103 (124)
331 2bz2_A Negative elongation fac 99.3 3.3E-12 1.1E-16 119.7 8.4 76 276-354 38-113 (121)
332 1wf0_A TDP-43, TAR DNA-binding 99.3 1.3E-12 4.5E-17 114.7 5.3 77 276-354 4-80 (88)
333 3q2s_C Cleavage and polyadenyl 99.3 1.9E-12 6.5E-17 134.6 7.3 76 191-266 67-149 (229)
334 2db1_A Heterogeneous nuclear r 99.3 1.6E-12 5.4E-17 121.2 5.7 76 190-266 15-97 (118)
335 2bz2_A Negative elongation fac 99.3 3.8E-12 1.3E-16 119.3 8.3 78 189-269 36-113 (121)
336 2hzc_A Splicing factor U2AF 65 99.3 5E-12 1.7E-16 110.2 8.5 71 276-348 5-86 (87)
337 2voo_A Lupus LA protein; RNA-b 99.3 6.3E-12 2.1E-16 127.3 10.4 114 238-352 63-187 (193)
338 2f3j_A RNA and export factor b 99.3 4.1E-12 1.4E-16 127.0 8.7 80 188-267 84-167 (177)
339 2lmi_A GRSF-1, G-rich sequence 99.3 1.9E-12 6.3E-17 118.3 5.5 77 189-266 8-91 (107)
340 2xs2_A Deleted in azoospermia- 99.3 1.9E-12 6.4E-17 116.7 5.3 77 275-353 7-87 (102)
341 2hgl_A HNRPF protein, heteroge 99.3 1.7E-12 5.9E-17 124.4 5.1 77 189-266 41-124 (136)
342 2f3j_A RNA and export factor b 99.3 6.8E-12 2.3E-16 125.4 9.6 78 276-353 87-168 (177)
343 3u1l_A PRE-mRNA-splicing facto 99.3 9.6E-12 3.3E-16 129.9 10.3 101 253-354 110-231 (240)
344 3u1l_A PRE-mRNA-splicing facto 99.2 8.7E-12 3E-16 130.2 8.6 81 189-270 131-232 (240)
345 2dnn_A RNA-binding protein 12; 99.2 5E-12 1.7E-16 116.5 5.8 73 191-265 15-91 (109)
346 2hgn_A Heterogeneous nuclear r 99.2 3.6E-12 1.2E-16 122.6 4.9 79 188-268 42-124 (139)
347 2dha_A FLJ20171 protein; RRM d 99.2 3.3E-12 1.1E-16 120.3 3.8 76 276-352 22-105 (123)
348 2dnl_A Cytoplasmic polyadenyla 99.2 1.4E-11 4.8E-16 113.8 7.9 72 190-264 6-85 (114)
349 2hgm_A HNRPF protein, heteroge 99.2 1.2E-11 4.2E-16 116.9 7.5 76 189-266 39-120 (126)
350 2pe8_A Splicing factor 45; RRM 99.2 3.4E-11 1.2E-15 110.2 9.8 76 276-351 7-93 (105)
351 2dit_A HIV TAT specific factor 99.2 4.1E-11 1.4E-15 110.3 10.4 82 188-269 11-104 (112)
352 2dha_A FLJ20171 protein; RRM d 99.2 5.5E-12 1.9E-16 118.8 4.6 75 190-265 21-103 (123)
353 2hgm_A HNRPF protein, heteroge 99.2 9.8E-12 3.3E-16 117.6 6.1 75 276-352 41-121 (126)
354 2dnl_A Cytoplasmic polyadenyla 99.2 2.9E-11 9.9E-16 111.6 8.9 78 276-356 7-92 (114)
355 2dit_A HIV TAT specific factor 99.2 4.7E-11 1.6E-15 110.0 10.2 79 275-353 13-103 (112)
356 2pe8_A Splicing factor 45; RRM 99.2 3.3E-11 1.1E-15 110.3 8.5 77 190-266 6-93 (105)
357 3pgw_S U1-70K; protein-RNA com 99.2 2.5E-11 8.4E-16 137.8 9.0 80 189-268 99-183 (437)
358 2j8a_A Histone-lysine N-methyl 99.2 2.9E-11 9.9E-16 113.8 6.3 77 278-354 3-98 (136)
359 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.6E-10 5.5E-15 104.9 8.3 67 286-354 26-92 (100)
360 2voo_A Lupus LA protein; RNA-b 99.1 1.3E-10 4.3E-15 117.7 8.3 75 191-266 108-186 (193)
361 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.3E-10 2.2E-14 100.9 11.6 75 192-268 10-91 (100)
362 3v4m_A Splicing factor U2AF 65 99.1 2.4E-10 8.1E-15 104.5 8.7 77 276-352 4-97 (105)
363 3v4m_A Splicing factor U2AF 65 99.1 2.2E-10 7.5E-15 104.7 7.8 76 190-265 3-95 (105)
364 2j8a_A Histone-lysine N-methyl 99.1 5.9E-11 2E-15 111.7 3.9 72 193-264 3-93 (136)
365 3tht_A Alkylated DNA repair pr 99.0 3.3E-10 1.1E-14 124.3 8.7 76 188-264 14-96 (345)
366 1jmt_A Splicing factor U2AF 35 99.0 1.6E-10 5.5E-15 105.4 3.8 68 282-349 20-103 (104)
367 3tht_A Alkylated DNA repair pr 99.0 7.3E-10 2.5E-14 121.6 9.0 74 276-350 17-97 (345)
368 3s6e_A RNA-binding protein 39; 98.9 1.7E-09 6E-14 100.3 8.5 76 276-351 6-92 (114)
369 3ue2_A Poly(U)-binding-splicin 98.9 1.3E-09 4.4E-14 101.8 7.7 76 276-351 19-108 (118)
370 1jmt_A Splicing factor U2AF 35 98.9 5E-10 1.7E-14 102.1 3.6 68 197-264 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 98.9 1.9E-09 6.5E-14 100.7 7.6 75 191-265 19-107 (118)
372 3s6e_A RNA-binding protein 39; 98.8 4.9E-09 1.7E-13 97.3 7.8 76 190-265 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.7 3.2E-08 1.1E-12 87.5 8.6 75 275-353 5-87 (91)
374 1uw4_A UPF3X; nonsense mediate 98.6 9E-08 3.1E-12 85.0 8.4 84 695-780 2-88 (91)
375 1owx_A Lupus LA protein, SS-B, 98.6 1.8E-07 6E-12 87.6 10.2 85 276-362 17-105 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.4 1.4E-07 4.8E-12 83.9 4.6 73 275-351 13-94 (95)
377 2l08_A Regulator of nonsense t 98.4 8.8E-08 3E-12 85.6 3.1 84 695-780 10-96 (97)
378 1owx_A Lupus LA protein, SS-B, 98.4 6.6E-07 2.3E-11 83.7 9.0 73 190-263 16-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.3 8.1E-07 2.8E-11 78.6 6.6 74 190-267 5-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.3 9.3E-07 3.2E-11 90.5 7.8 63 289-351 141-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.1 3.5E-06 1.2E-10 86.2 7.2 62 204-265 141-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.1 5.3E-06 1.8E-10 75.3 7.3 72 276-348 20-96 (117)
383 1ufw_A Synaptojanin 2; RNP dom 98.0 5.4E-06 1.8E-10 73.7 4.9 72 190-265 13-93 (95)
384 2l9w_A U4/U6 snRNA-associated- 97.7 4E-05 1.4E-09 69.6 6.3 72 190-262 19-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.5 0.00065 2.2E-08 61.2 11.2 88 191-290 7-99 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.5 0.00062 2.1E-08 61.3 10.4 83 277-363 8-95 (104)
387 1wey_A Calcipressin 1; structu 96.8 0.0011 3.9E-08 59.8 5.1 75 278-353 6-85 (104)
388 1wey_A Calcipressin 1; structu 96.5 0.0038 1.3E-07 56.4 5.9 75 192-267 5-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.1 0.013 4.5E-07 54.2 7.8 74 275-351 22-96 (119)
390 1uw4_A UPF3X; nonsense mediate 96.0 0.014 4.8E-07 51.6 7.2 64 193-256 2-72 (91)
391 1whv_A Poly(A)-specific ribonu 94.7 0.058 2E-06 48.1 6.6 55 192-250 16-70 (100)
392 1whv_A Poly(A)-specific ribonu 94.3 0.084 2.9E-06 47.0 6.7 54 278-335 17-70 (100)
393 1wwh_A Nucleoporin 35, nucleop 94.1 0.12 4.1E-06 47.8 7.6 70 191-263 23-93 (119)
394 3ctr_A Poly(A)-specific ribonu 93.8 0.054 1.8E-06 48.4 4.3 53 279-335 8-60 (101)
395 3ctr_A Poly(A)-specific ribonu 93.6 0.076 2.6E-06 47.5 5.1 54 193-250 7-60 (101)
396 2l08_A Regulator of nonsense t 93.1 0.087 3E-06 47.0 4.6 67 191-257 8-81 (97)
397 3pq1_A Poly(A) RNA polymerase; 92.7 0.046 1.6E-06 61.9 2.8 56 191-247 52-107 (464)
398 3p3d_A Nucleoporin 53; structu 92.1 0.11 3.7E-06 48.8 4.1 72 277-350 7-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 91.4 0.074 2.5E-06 60.3 2.5 56 277-333 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 86.9 0.43 1.5E-05 44.8 3.7 72 191-264 6-96 (132)
401 3d45_A Poly(A)-specific ribonu 75.6 6.5 0.00022 45.0 8.8 55 193-251 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 62.8 15 0.0005 42.1 8.1 54 278-335 441-494 (507)
403 4eyt_A Telomerase associated p 23.9 3.3E+02 0.011 23.6 8.1 74 277-353 12-92 (129)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=1.3e-31 Score=285.74 Aligned_cols=237 Identities=16% Similarity=0.231 Sum_probs=198.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEEEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYGE 189 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~~~e 189 (823)
.++++|++||.++++.++.++|+.+|-+.+.+ ...+|++++.|.+...+. .+++..+.+....+.. .
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~-----~ 92 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL-----Q 92 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-----C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-----c
Confidence 47899999999999999999999999334433 456789999999887664 2344444443333322 2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.|+|..+.|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999873 5668999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccceeeecCCCCC-CHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCcc
Q 003400 265 IPKDNPSDKDLNQGTLVVFNLDPSV-SNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339 (823)
Q Consensus 265 ~pk~~~~~~~~~~~tLfV~NLp~~v-teedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i 339 (823)
.++.... ......+|||+|||.++ ++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765432 33456799999999995 99999999999999999875 355789999999999999999999999999
Q ss_pred CCceEEEEecCCCcccchhhh
Q 003400 340 AGKRIKLEPSRPGGARRNLML 360 (823)
Q Consensus 340 ~Gr~I~V~~s~~~~~r~~~~~ 360 (823)
.|++|+|.|++++..++..+.
T Consensus 252 ~g~~l~v~~a~~~~~~~~~~~ 272 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGRSMLA 272 (284)
T ss_dssp TTEECEEEECCSSSCHHHHHH
T ss_pred CCeEEEEEEecCCCcccchhh
Confidence 999999999999887665433
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.3e-31 Score=282.76 Aligned_cols=230 Identities=18% Similarity=0.284 Sum_probs=188.3
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccccc---cccccCCCCccccCCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTVAGEHPY 187 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~~---~~~~l~n~~~~~~~~~~~ 187 (823)
.++++|++||.++++.++.++|+.+|.| .|..+... .++++++.|.+...|... ++..+.+....+.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~----- 113 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS----- 113 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE-----
Confidence 5889999999999999999999999987 44444322 479999999988766533 2233332222222
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
....++|||+|||.++++++|+++|++|| .|..|++ .++++|||||+|.+.++|.+|++.|+|..+.|++|.|.
T Consensus 114 -~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 -HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp -ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred -ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 13579999999999999999999999999 9999984 24689999999999999999999999999999999999
Q ss_pred ccCCCCCCCC---CCCCccceeeecCCCC-CCHHHHHHHhcccCceEEEEeC------CCcccEEEEEEcCHHHHHHHHH
Q 003400 263 FSIPKDNPSD---KDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALK 332 (823)
Q Consensus 263 ~a~pk~~~~~---~~~~~~tLfV~NLp~~-vteedL~~~Fs~fG~I~~iri~------~~srG~aFVeF~d~e~A~kAl~ 332 (823)
++.+...... ......+|||+|||.+ +++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 9987654322 2334579999999999 9999999999999999999873 667899999999999999999
Q ss_pred HhCCCccCCceEEEEecCCC
Q 003400 333 SLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s~~~ 352 (823)
.|||..|.|++|+|.|++++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGTTEEETTEEEEEEECCCC
T ss_pred HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.1e-29 Score=260.71 Aligned_cols=166 Identities=19% Similarity=0.349 Sum_probs=146.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 357899999999999999999999999999999984 467899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003400 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (823)
Q Consensus 264 a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri---~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (823)
+...... ......+|||+|||.++|+++|+++|++||.|..|++ .+.++|||||+|.+.++|++|++.|||..|.
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 8643321 1223468999999999999999999999999999976 3446899999999999999999999999999
Q ss_pred CceEEEEecCCCcccc
Q 003400 341 GKRIKLEPSRPGGARR 356 (823)
Q Consensus 341 Gr~I~V~~s~~~~~r~ 356 (823)
|++|+|++++++..+.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999998865443
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=238.46 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=142.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
|+|||+|||.++|+++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999985 35678999999999999999999999999999999999987654
Q ss_pred CCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003400 269 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (823)
Q Consensus 269 ~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~ 343 (823)
.. ......+|||+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 32 3345679999999999999999999999999999976 3567899999999999999999999999999999
Q ss_pred EEEEecCC
Q 003400 344 IKLEPSRP 351 (823)
Q Consensus 344 I~V~~s~~ 351 (823)
|+|+|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=5e-28 Score=236.40 Aligned_cols=155 Identities=23% Similarity=0.429 Sum_probs=141.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
++++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5799999999999999999999999999999984 45678999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (823)
++.. .....+|||+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6543 235679999999999999999999999999999976 4556899999999999999999999999998
Q ss_pred C--ceEEEEec
Q 003400 341 G--KRIKLEPS 349 (823)
Q Consensus 341 G--r~I~V~~s 349 (823)
| ++|+|+||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=5.4e-28 Score=235.27 Aligned_cols=155 Identities=25% Similarity=0.441 Sum_probs=140.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
++++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999874 56678999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (823)
+... .....+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6432 335678999999999999999999999999999976 3456899999999999999999999999999
Q ss_pred Cce--EEEEec
Q 003400 341 GKR--IKLEPS 349 (823)
Q Consensus 341 Gr~--I~V~~s 349 (823)
|+. |+|+||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.2e-27 Score=243.56 Aligned_cols=163 Identities=20% Similarity=0.387 Sum_probs=143.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4689999999999999999999999999999985 46689999999999999999999999999999999999876
Q ss_pred CCCCCC-------CCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 003400 266 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 266 pk~~~~-------~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~ 333 (823)
...... .......+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 543211 01224479999999999999999999999999999976 345689999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 003400 334 LNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 334 LnG~~i~Gr~I~V~~s~~~~ 353 (823)
|||..|.|+.|+|.+++++.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999998764
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=2.5e-27 Score=245.95 Aligned_cols=164 Identities=26% Similarity=0.355 Sum_probs=147.2
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 189 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 189 e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
..++++|||+|||. ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..+.|++|.|.++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35789999999999 99999999999999999999976666899999999999999999999999999999999998754
Q ss_pred CCCCCC-------------------------------CCCccceeeecCCCCCCHHHHHHHhcccC-ceEEEEeCCCccc
Q 003400 268 DNPSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRH 315 (823)
Q Consensus 268 ~~~~~~-------------------------------~~~~~tLfV~NLp~~vteedL~~~Fs~fG-~I~~iri~~~srG 315 (823)
.....+ .....+|||+|||.++++++|+++|++|| .|..|++....+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211100 11246899999999999999999999999 9999999777799
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCCC
Q 003400 316 HKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 352 (823)
Q Consensus 316 ~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~~~ 352 (823)
+|||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999864
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=2.3e-27 Score=237.84 Aligned_cols=167 Identities=19% Similarity=0.367 Sum_probs=140.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 34457799999999999999999999999999999874 456899999999999999999985 899999999999
Q ss_pred cccCCCCCCCC--CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 003400 262 HFSIPKDNPSD--KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 334 (823)
Q Consensus 262 ~~a~pk~~~~~--~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~L 334 (823)
.++.+...... ......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 99876543221 2234579999999999999999999999999999976 456789999999999999999986
Q ss_pred CCCccCCceEEEEecCCCccc
Q 003400 335 NRSDIAGKRIKLEPSRPGGAR 355 (823)
Q Consensus 335 nG~~i~Gr~I~V~~s~~~~~r 355 (823)
+|..|.|+.|.|.++.++...
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp SCCEETTEECEEEECC-----
T ss_pred CCcEECCEEEEEEecCChhHh
Confidence 799999999999999887644
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.6e-27 Score=251.05 Aligned_cols=164 Identities=23% Similarity=0.444 Sum_probs=146.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~--~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
...++++|||+|||.++|+++|+ ++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34678999999999999999977 89999999999985 6678999999999999999999999999999999999
Q ss_pred cccCCCCCC-----------------------------------------------------------------------
Q 003400 262 HFSIPKDNP----------------------------------------------------------------------- 270 (823)
Q Consensus 262 ~~a~pk~~~----------------------------------------------------------------------- 270 (823)
.|+..+...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654420
Q ss_pred ------------------------------------CCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcc
Q 003400 271 ------------------------------------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314 (823)
Q Consensus 271 ------------------------------------~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~sr 314 (823)
.......++|||+|||.++++++|+++|++||.|.+|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 00112346799999999999999999999999999999876667
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCC
Q 003400 315 HHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRP 351 (823)
Q Consensus 315 G~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~~ 351 (823)
|||||+|.+.++|.+|++.|||..|. |+.|+|+|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=5e-28 Score=238.89 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=144.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE----EeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v----~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...+.++|||+|||.++|+++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 34578999999999999999999999999865431 1457789999999999999999995 999999999999999
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003400 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (823)
Q Consensus 264 a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~ 343 (823)
+.++... ......+|||+|||.++++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9765432 23456799999999999999999999999999998667788999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 003400 344 IKLEPSRPG 352 (823)
Q Consensus 344 I~V~~s~~~ 352 (823)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999875
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.8e-27 Score=232.25 Aligned_cols=154 Identities=16% Similarity=0.340 Sum_probs=139.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~ 258 (823)
+++++|||+|||.++|+++|+++|++| | .|.++++ .+++|||||+|.+.++|++|+ .|++..+.|++
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 357999999999999999999999999 7 7888864 567999999999999999999 79999999999
Q ss_pred ccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHH
Q 003400 259 LDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 259 L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~ 333 (823)
|.|.++.+.... ....+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.
T Consensus 80 i~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 80 LKIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp CEEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred eeecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 999997654332 23679999999999999999999999999999976 455689999999999999999999
Q ss_pred hCCCccCCceEEEEec
Q 003400 334 LNRSDIAGKRIKLEPS 349 (823)
Q Consensus 334 LnG~~i~Gr~I~V~~s 349 (823)
|||..+.|++|+|++|
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999997
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=3.5e-27 Score=241.78 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=137.9
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 191 PSRTLFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 191 ~srtLfV~NLP-~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
++++|||+||| .++|+++|+++|++||+|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998777899999999999999999999999999999999999864321
Q ss_pred CCC---------------------C------------CCCccceeeecCCCCCCHHHHHHHhcccCce--EEEEeCC---
Q 003400 270 PSD---------------------K------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV--KEIRETP--- 311 (823)
Q Consensus 270 ~~~---------------------~------------~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I--~~iri~~--- 311 (823)
... . .....+|||+|||.++|+++|+++|++||.| .++++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123579999999999999999999999999 8887643
Q ss_pred CcccEEEEEEcCHHHHHHHHHHhCCCccCCc----eEEEEec
Q 003400 312 HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK----RIKLEPS 349 (823)
Q Consensus 312 ~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr----~I~V~~s 349 (823)
.++|+|||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999885 5777664
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=5.6e-27 Score=249.81 Aligned_cols=178 Identities=19% Similarity=0.317 Sum_probs=162.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
.++++|||+|||.++|+++|+++|++|| |..|++ ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3679999999999999999999999999 999977 7889999999999999999999999999999999999864
Q ss_pred CCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003400 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (823)
Q Consensus 270 ~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (823)
...+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2468999999999999999999999999999875 45578999999999999999999999999999999
Q ss_pred EEEecCCCcc-------cchhhhcccccc-CHHHHHHHHhhcC
Q 003400 345 KLEPSRPGGA-------RRNLMLQLNQEL-EQDESRILQHQVG 379 (823)
Q Consensus 345 ~V~~s~~~~~-------r~~~~~ql~~~~-~~~~l~~~f~~~G 379 (823)
.|.++.++.. +..++.++...+ +++++..+|.++|
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 9999987652 245788999896 8999999999887
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.1e-27 Score=239.51 Aligned_cols=162 Identities=26% Similarity=0.363 Sum_probs=145.5
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 191 PSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 191 ~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
.+++|||+|||. ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999987666689999999999999999999999999999999999875421
Q ss_pred CCCC-------------------------------CCCccceeeecCCCCCCHHHHHHHhcccC-ceEEEEeCCCcccEE
Q 003400 270 PSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRHHK 317 (823)
Q Consensus 270 ~~~~-------------------------------~~~~~tLfV~NLp~~vteedL~~~Fs~fG-~I~~iri~~~srG~a 317 (823)
...+ .....+|||+|||..+++++|+++|++|| .|..|++....+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1100 12256899999999999999999999999 999999977779999
Q ss_pred EEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCCC
Q 003400 318 FIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 352 (823)
Q Consensus 318 FVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~~~ 352 (823)
||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999864
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=5.9e-27 Score=229.99 Aligned_cols=157 Identities=20% Similarity=0.405 Sum_probs=137.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CC--CcccEEEEEeCCHHHHHHHHHHhcCCccc---ccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----AC--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 260 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~--ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~---gr~L~ 260 (823)
++++|||+|||.++|+++|+++|++||+|.+|++ .+ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999874 22 68999999999999999999999998876 56777
Q ss_pred ccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCC
Q 003400 261 IHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (823)
Q Consensus 261 V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG 336 (823)
+.++.+... ......+|||+|||.++|+++|+++|++||.|.++++ .+.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777655432 2335679999999999999999999999999999976 345689999999999999999999999
Q ss_pred CccC---CceEEEEecC
Q 003400 337 SDIA---GKRIKLEPSR 350 (823)
Q Consensus 337 ~~i~---Gr~I~V~~s~ 350 (823)
..+. |++|+|+|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999974
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.3e-27 Score=233.51 Aligned_cols=155 Identities=20% Similarity=0.432 Sum_probs=139.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
++++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999984 467889999999999999999994 678899999999886
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (823)
++. .....++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++ ++|..+.
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 542 1234569999999999999999999999999999976 35678999999999999999998 8999999
Q ss_pred CceEEEEecCCC
Q 003400 341 GKRIKLEPSRPG 352 (823)
Q Consensus 341 Gr~I~V~~s~~~ 352 (823)
|++|+|.++.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999875
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=7.2e-27 Score=234.57 Aligned_cols=162 Identities=16% Similarity=0.324 Sum_probs=142.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L 259 (823)
.+++|||+|||.++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|+|..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 57999999999999999999999999 5 6777754 678999999999999999999 799999999999
Q ss_pred cccccCCCCCCCC----------------CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEE
Q 003400 260 DIHFSIPKDNPSD----------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKF 318 (823)
Q Consensus 260 ~V~~a~pk~~~~~----------------~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aF 318 (823)
.|.++.+...... ......+|||+|||.++++++|+++|++||.|..|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999865432110 1134579999999999999999999999999999976 455689999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 319 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 319 VeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
|+|.+.++|.+|++.|||..+.|+.|+|++++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999988753
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=2.5e-26 Score=245.72 Aligned_cols=182 Identities=20% Similarity=0.267 Sum_probs=156.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
+..+++.++|||+|||.++|+++|+++|+.||+|..|++. ..++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3456678999999999999999999999999999999852 2258999999999999999995 99999999999999
Q ss_pred ccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccC-ceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCC
Q 003400 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRS 337 (823)
Q Consensus 263 ~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG-~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (823)
++ ...+|||+|||.++++++|+++|+.|| .|..|++. +.++|||||+|.+.++|.+|++.|||.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 356899999999999999999999999 99999863 357899999999999999999999999
Q ss_pred ccCCceEEEEecCCCcc-----------cchhhhccccc-cCHHHHHHHHhhcC
Q 003400 338 DIAGKRIKLEPSRPGGA-----------RRNLMLQLNQE-LEQDESRILQHQVG 379 (823)
Q Consensus 338 ~i~Gr~I~V~~s~~~~~-----------r~~~~~ql~~~-~~~~~l~~~f~~~G 379 (823)
.+.|+.|.|.++.+... +..++.++... ++.+++..+|.+||
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 99999999999876543 23468889899 99999999999997
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=5.5e-25 Score=232.81 Aligned_cols=156 Identities=28% Similarity=0.418 Sum_probs=141.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
.+.++|||+|||.++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|+..|+|..+.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~--- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH--- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc---
Confidence 45689999999999999999999999999999976 56799999999999999999999999999999999999863
Q ss_pred CCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhC-CCccC---C
Q 003400 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIA---G 341 (823)
Q Consensus 270 ~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~Ln-G~~i~---G 341 (823)
..+|||+|||..+|+++|+++|+.||.|..|++ ++.++|||||+|.+.++|.+|+..|| |..+. +
T Consensus 96 -------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 96 -------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp -------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred -------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 458999999999999999999999999999976 45678999999999999999999995 44444 8
Q ss_pred ceEEEEecCCCcccc
Q 003400 342 KRIKLEPSRPGGARR 356 (823)
Q Consensus 342 r~I~V~~s~~~~~r~ 356 (823)
++|.|+++.+...+.
T Consensus 169 r~i~v~~~~~~~~~~ 183 (261)
T 3sde_A 169 RPVIVEPMEQFDDED 183 (261)
T ss_dssp CBCEEEECCCEESSS
T ss_pred ceEEEeeccccCccC
Confidence 999999998865443
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=3e-19 Score=182.97 Aligned_cols=154 Identities=13% Similarity=0.239 Sum_probs=125.0
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCcccccc----ccccccCCCCccccCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP 186 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~----~~~~~l~n~~~~~~~~~~ 186 (823)
.+.+||++||.+++|.+|+++|+.+|.| .|..|..++..+|++++.|.+...+.. +++..+.+....+.....
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 4689999999999999999999999987 667777888899999999998866552 233333333222221111
Q ss_pred C---CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 187 Y---GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 187 ~---~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
. .....++|||+|||.++|+++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|+|..|.|++|.
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~ 174 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 1 1224579999999999999999999999999999874 345789999999999999999999999999999999
Q ss_pred ccccCCC
Q 003400 261 IHFSIPK 267 (823)
Q Consensus 261 V~~a~pk 267 (823)
|.++.++
T Consensus 175 V~~a~~~ 181 (213)
T 4f02_A 175 VGRFKSR 181 (213)
T ss_dssp EEECCCH
T ss_pred EEEcCCC
Confidence 9999764
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=4.6e-19 Score=171.88 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=112.6
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-cCCccccccccccccCCCC------------CCCCCCCCccceeeecCCCCCCHH
Q 003400 226 CKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSDKDLNQGTLVVFNLDPSVSNE 292 (823)
Q Consensus 226 ~ksrG~AFV~F~~~e~A~~Ai~~L-ng~~l~gr~L~V~~a~pk~------------~~~~~~~~~~tLfV~NLp~~vtee 292 (823)
.+.+|+++|+|.+.++|++|++.+ +|..+.| .+.+.++..+. .........++|||+|||++++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 356899999999999999999999 9999999 99999876421 112223456799999999999999
Q ss_pred HHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 293 DLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 293 dL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
+|+++|++||.|.+|++...++|||||+|.+.++|.+|++.|||..|.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999977789999999999999999999999999999999999998763
No 23
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=2.2e-18 Score=174.99 Aligned_cols=157 Identities=13% Similarity=0.231 Sum_probs=126.4
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 186 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~ 186 (823)
.++++|++||.++++.+++++|+.+|.| .|..+..++..++++++.|.+...+. .+++..+.+....+.....
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 6789999999999999999999999987 55556667788999999999887665 2444444444433322211
Q ss_pred C------------CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHh
Q 003400 187 Y------------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 249 (823)
Q Consensus 187 ~------------~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~L 249 (823)
. ...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 1 1245689999999999999999999999999999984 4567999999999999999999999
Q ss_pred cCCccccccccccccCCCCCC
Q 003400 250 QNKPLRRRKLDIHFSIPKDNP 270 (823)
Q Consensus 250 ng~~l~gr~L~V~~a~pk~~~ 270 (823)
+|..|.|+.|.|.|+.++..+
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSST
T ss_pred cCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999876543
No 24
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=3.2e-18 Score=166.94 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=102.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhcCCccc-------cccccccccCCCC--CCCCCCCCccceeeecCCCCCCHHHHH
Q 003400 225 ACKHRGFVMISYYDIRAARTAMRALQNKPLR-------RRKLDIHFSIPKD--NPSDKDLNQGTLVVFNLDPSVSNEDLR 295 (823)
Q Consensus 225 ~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~-------gr~L~V~~a~pk~--~~~~~~~~~~tLfV~NLp~~vteedL~ 295 (823)
..+++|||||+|.+.++|++|++.+++.... +............ ..........+|||+|||.++++++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 3468999999999999999999887753221 2222211111111 111223346799999999999999999
Q ss_pred HHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 296 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 296 ~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999986 456899999999999999999999999999999999999987653
No 25
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=2.3e-18 Score=167.73 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=123.3
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 186 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~ 186 (823)
.++++|++||.++++.++.++|+.+|.| .+..+..++..+|++++.|.+...+. .+++..+.+....+....+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 3679999999999999999999999987 44445567778899999999887665 2344444444333333222
Q ss_pred C-CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccc--cc
Q 003400 187 Y-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 258 (823)
Q Consensus 187 ~-~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g--r~ 258 (823)
. ...+.++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|.+|++.|+|..+.| ++
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 2 3456789999999999999999999999999999874 45678999999999999999999999999987 99
Q ss_pred cccccc
Q 003400 259 LDIHFS 264 (823)
Q Consensus 259 L~V~~a 264 (823)
|+|.||
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999875
No 26
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.6e-18 Score=165.58 Aligned_cols=150 Identities=19% Similarity=0.283 Sum_probs=121.3
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccC---C
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAG---E 184 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~---~ 184 (823)
++++|++||.++++.++.++|+.+|.| .+..+. .+..++++++.|.+...+. .+++..+.+....+.. .
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 368999999999999999999999997 444443 4667899999999886654 3344444444332221 2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccc
Q 003400 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (823)
Q Consensus 185 ~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L 259 (823)
......+.++|||+|||.++++++|+++|++||.|..+.+ +++++|||||+|.+.++|.+|++.|+|..+.|++|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 2234556789999999999999999999999999999874 45788999999999999999999999999999999
Q ss_pred cccccC
Q 003400 260 DIHFSI 265 (823)
Q Consensus 260 ~V~~a~ 265 (823)
.|.|+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 27
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=3.8e-18 Score=165.55 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=122.2
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCcccccc----ccccccCCCCccccCCCCC
Q 003400 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHPY 187 (823)
Q Consensus 115 ~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~----~~~~~l~n~~~~~~~~~~~ 187 (823)
++++|++||.++++.++.++|+.+|.| .+..+..++..++++++.|.+...+.. +++..+.+....+....+.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 679999999999999999999999987 555666677888999999998876652 3444454444333333322
Q ss_pred -CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccc--c
Q 003400 188 -GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK--L 259 (823)
Q Consensus 188 -~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~--L 259 (823)
...+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+. |
T Consensus 83 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 83 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 2346689999999999999999999999999999874 4557899999999999999999999999999975 6
Q ss_pred ccccc
Q 003400 260 DIHFS 264 (823)
Q Consensus 260 ~V~~a 264 (823)
.|.||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 67664
No 28
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=4.3e-18 Score=170.25 Aligned_cols=156 Identities=17% Similarity=0.277 Sum_probs=120.1
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccccc---cccccCCCCccccC----
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTVAG---- 183 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~~---~~~~l~n~~~~~~~---- 183 (823)
.++++|++||.++++.++.++|+.+|.| .|..+..++..+|++++.|.+...|... .+..+.+....+..
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 5789999999999999999999999987 5666767778899999999988665522 22223222222211
Q ss_pred ---CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccc
Q 003400 184 ---EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (823)
Q Consensus 184 ---~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~ 255 (823)
..+....+.++|||+|||.++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|++. ++..+.
T Consensus 93 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~ 171 (196)
T 1l3k_A 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN 171 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET
T ss_pred ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC
Confidence 11122335689999999999999999999999999999874 466899999999999999999986 799999
Q ss_pred cccccccccCCCCCC
Q 003400 256 RRKLDIHFSIPKDNP 270 (823)
Q Consensus 256 gr~L~V~~a~pk~~~ 270 (823)
|+.|.|.++.++...
T Consensus 172 G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 172 GHNCEVRKALSKQEM 186 (196)
T ss_dssp TEECEEEECC-----
T ss_pred CEEEEEEecCChhHh
Confidence 999999999887654
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=7.7e-18 Score=164.87 Aligned_cols=151 Identities=15% Similarity=0.269 Sum_probs=119.0
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccC--cccceeEeeecCccccc----cccccccCCC---Cccc
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQES--LSMSMSKISISDSASGN----GLLHYSVPNG---AGTV 181 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es--~~~g~~~v~~~e~~~a~----~~~~~~l~n~---~~~~ 181 (823)
.++++|++||.++++.+++++|+.+|.| .|..+...+ ..++++++.|.+...+. .+++..+..+ ...+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4789999999999999999999999987 555555554 78899999999886654 2333333222 1111
Q ss_pred c--CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccc
Q 003400 182 A--GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (823)
Q Consensus 182 ~--~~~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~ 255 (823)
. ........+.++|||+|||.++|+++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.|+|..+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 1 111223346789999999999999999999999999999884 4567899999999999999999999998776
Q ss_pred ---ccccccccc
Q 003400 256 ---RRKLDIHFS 264 (823)
Q Consensus 256 ---gr~L~V~~a 264 (823)
+++|.|.|+
T Consensus 163 ~g~~~~l~V~~a 174 (175)
T 3nmr_A 163 EGCSSPMVVKFA 174 (175)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCCCCeEEEec
Confidence 499999987
No 30
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=9.6e-19 Score=170.48 Aligned_cols=153 Identities=18% Similarity=0.275 Sum_probs=121.5
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeccCccCcccceeEeeecCccccccccc--cccCCCCccccCCCCC-
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLH--YSVPNGAGTVAGEHPY- 187 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v---~V~~d~~es~~~g~~~v~~~e~~~a~~~~~--~~l~n~~~~~~~~~~~- 187 (823)
.++++|++||.++++.+++++|+.+|.| .|..+..++..+|++++.|.+...+..... ..+.+....+....+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchh
Confidence 4689999999999999999999999987 445555677889999999998866642211 1122222222111111
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 83 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 83 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 1234679999999999999999999999999999984 46788999999999999999998 89999999999999
Q ss_pred ccCCC
Q 003400 263 FSIPK 267 (823)
Q Consensus 263 ~a~pk 267 (823)
|+.|+
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99875
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=1e-18 Score=172.04 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=125.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE--EEeccCccCcccceeEeeecCccccc---cccccccCCCCccccCCC---
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM--ELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVAGEH--- 185 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v--~V~~d~~es~~~g~~~v~~~e~~~a~---~~~~~~l~n~~~~~~~~~--- 185 (823)
.++++|++||.++++.+++++|+.+|.+ .+..+...+..+|++++.|.+...+. .+++..+.+....+....
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 92 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence 5789999999999999999999999875 13345556778899999999886654 344444444433332222
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
.....+.++|||+|||.++++++|+++|++||+|..+..+++++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.
T Consensus 93 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 93 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 22344678999999999999999999999999999885567899999999999999999999999999999999999997
Q ss_pred CC
Q 003400 266 PK 267 (823)
Q Consensus 266 pk 267 (823)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=4.3e-18 Score=158.07 Aligned_cols=103 Identities=16% Similarity=0.317 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
.+++|||+|||.++|+++|+++|++||.|.+|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3679999999999999999999999999999874 3457899999999999999999999999999999999999775
Q ss_pred CCCCC----CCCCccceeeecCCCCCCHHH
Q 003400 268 DNPSD----KDLNQGTLVVFNLDPSVSNED 293 (823)
Q Consensus 268 ~~~~~----~~~~~~tLfV~NLp~~vteed 293 (823)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 53321 122345899999999999864
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=2.3e-17 Score=161.43 Aligned_cols=148 Identities=14% Similarity=0.266 Sum_probs=116.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCC----C-------cEEEeccCccCcccceeEeeecCcccccc---ccccccCCCCc
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSG----G-------GMELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAG 179 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~----G-------~v~V~~d~~es~~~g~~~v~~~e~~~a~~---~~~~~l~n~~~ 179 (823)
.++++|++||.++++.++.++|+.+ | .| .+......++++++.|.+.+.|.. +++..+.+...
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v---~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV---LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSE---EEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCce---eeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 4789999999999999999999999 5 33 111223457899999988766553 33333443333
Q ss_pred cccCCCCC-CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCc
Q 003400 180 TVAGEHPY-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP 253 (823)
Q Consensus 180 ~~~~~~~~-~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~ 253 (823)
.+...... .....++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|+|..
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 33222221 2234689999999999999999999999999999884 56679999999999999999999999999
Q ss_pred ccccccccccc
Q 003400 254 LRRRKLDIHFS 264 (823)
Q Consensus 254 l~gr~L~V~~a 264 (823)
+.|++|.|.||
T Consensus 161 ~~g~~l~V~~A 171 (172)
T 2g4b_A 161 LGDKKLLVQRA 171 (172)
T ss_dssp ETTEECEEEEC
T ss_pred ECCeEEEEEeC
Confidence 99999999987
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=3.6e-17 Score=163.74 Aligned_cols=157 Identities=12% Similarity=0.213 Sum_probs=118.5
Q ss_pred CccccccccCCCCCChHHHHHhhcCCCcE---E-----EeccCccCcccceeEeeecCcccccc---ccccccCCCCccc
Q 003400 113 IMDDFDLRGLPSSLEDLEDYDIFGSGGGM---E-----LEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAGTV 181 (823)
Q Consensus 113 v~~el~V~~Lp~~~~E~el~dlFs~~G~v---~-----V~~d~~es~~~g~~~v~~~e~~~a~~---~~~~~l~n~~~~~ 181 (823)
..++++|++||.++++.++.++|+.+|.+ . ...+......++++++.|.+...+.. +++..+.+....+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 35789999999999999999999999521 0 01122234567899999988765542 2333333222111
Q ss_pred cCCC---------------------CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEE
Q 003400 182 AGEH---------------------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMIS 235 (823)
Q Consensus 182 ~~~~---------------------~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~ 235 (823)
.... .....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~ 162 (198)
T 2yh0_A 83 RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 162 (198)
T ss_dssp ECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred eCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEE
Confidence 1110 011246799999999999999999999999999999884 45679999999
Q ss_pred eCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 236 YYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 236 F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
|.+.++|++|++.|+|..+.|+.|.|.|+.++..
T Consensus 163 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 163 YVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp ESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999999987543
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=8.4e-17 Score=166.63 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=118.9
Q ss_pred ccccccccCCC-CCChHHHHHhhcCCCcE-EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCC-
Q 003400 114 MDDFDLRGLPS-SLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP- 186 (823)
Q Consensus 114 ~~el~V~~Lp~-~~~E~el~dlFs~~G~v-~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~- 186 (823)
...++|++||. ++++.+++++|+.+|.| .|.+.... ++++++.|.+...|. .+++..+.+....+....+
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 57899999999 99999999999999987 22222211 678889988876554 2344444443222211100
Q ss_pred -----------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEeCCCccc
Q 003400 187 -----------------------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKHRG 230 (823)
Q Consensus 187 -----------------------------------~~e~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~~~ksrG 230 (823)
....++++|||+|||.++++++|+++|++|| .|..|++..+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 0123478999999999999999999999999 9999998677899
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccc-cccccccccCCC
Q 003400 231 FVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 267 (823)
Q Consensus 231 ~AFV~F~~~e~A~~Ai~~Lng~~l~-gr~L~V~~a~pk 267 (823)
||||+|.+.++|.+|++.|+|..+. |++|+|.|+.++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999763
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=9.7e-17 Score=161.39 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=117.7
Q ss_pred ccccccccCCC-CCChHHHHHhhcCCCcE-EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCC-
Q 003400 114 MDDFDLRGLPS-SLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP- 186 (823)
Q Consensus 114 ~~el~V~~Lp~-~~~E~el~dlFs~~G~v-~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~- 186 (823)
.+.++|++||. ++++.++.++|+.+|.| .|.+-... ++++++.|.+...+. .+++..+.+....+.....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 36899999999 99999999999999987 33222211 578888888776554 2334344333222210000
Q ss_pred -----------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEeCCCccc
Q 003400 187 -----------------------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKHRG 230 (823)
Q Consensus 187 -----------------------------------~~e~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~~~ksrG 230 (823)
....++++|||+|||.++++++|+++|++|| .|..|++....+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g 159 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 159 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSS
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCc
Confidence 1123578999999999999999999999999 9999998677799
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCccc-cccccccccCCC
Q 003400 231 FVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 267 (823)
Q Consensus 231 ~AFV~F~~~e~A~~Ai~~Lng~~l~-gr~L~V~~a~pk 267 (823)
||||+|.+.++|.+|++.|+|..+. |++|+|.|+.++
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999999 999999998753
No 37
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=1e-16 Score=170.24 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccc-cccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~-gr~L~V~~a~ 265 (823)
++++|||+|||.++++++|+++|++||.|.+|++....+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 56899999999999999999999999999999876656799999999999999999999999999 9999999985
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=139.92 Aligned_cols=76 Identities=28% Similarity=0.485 Sum_probs=71.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3468999999999999999999999999999976 46788999999999999999999999999999999999998
Q ss_pred C
Q 003400 351 P 351 (823)
Q Consensus 351 ~ 351 (823)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 39
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=6.6e-16 Score=157.95 Aligned_cols=148 Identities=12% Similarity=0.140 Sum_probs=108.8
Q ss_pred ccccccccCC-CCCChHHHHHhhcCCCcE-EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCC--
Q 003400 114 MDDFDLRGLP-SSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH-- 185 (823)
Q Consensus 114 ~~el~V~~Lp-~~~~E~el~dlFs~~G~v-~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~-- 185 (823)
.+.++|++|+ .++++.+|+++|+.||.| .|.+-. . .+|++++.|.+...|. .+++..+.+....+....
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~-~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK-S--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT-T--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec-C--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 3679999999 899999999999999998 232221 1 3688899988876554 233333333211111000
Q ss_pred ---C---------------------------------CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCE--EEEEeC--
Q 003400 186 ---P---------------------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDI--RTLYTA-- 225 (823)
Q Consensus 186 ---~---------------------------------~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I--~~v~~~-- 225 (823)
+ ....++++|||+|||.++|+++|+++|++||.| .+|++.
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSG 160 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSC
T ss_pred ccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcC
Confidence 0 011356799999999999999999999999998 787743
Q ss_pred -CCcccEEEEEeCCHHHHHHHHHHhcCCccccc----ccccccc
Q 003400 226 -CKHRGFVMISYYDIRAARTAMRALQNKPLRRR----KLDIHFS 264 (823)
Q Consensus 226 -~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr----~L~V~~a 264 (823)
+..+|||||+|.+.++|.+|+..|+|..|.|. ++.|+++
T Consensus 161 ~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 161 KSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 24569999999999999999999999999876 4555543
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=138.92 Aligned_cols=76 Identities=22% Similarity=0.472 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4579999999999999999999999999999974 46789999999999999999999999999999999999997
Q ss_pred C
Q 003400 266 P 266 (823)
Q Consensus 266 p 266 (823)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 41
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.61 E-value=4.7e-16 Score=148.68 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=77.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe
Q 003400 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (823)
Q Consensus 230 G~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri 309 (823)
-++|++|.+...|..|+..++|....|+. .+.+..+ .......++|||+|||.++|+++|+++|++||.|..|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36889999999999999999887666553 2334433 233445679999999999999999999999999999976
Q ss_pred -----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003400 310 -----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (823)
Q Consensus 310 -----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r 355 (823)
++.++|||||+|.+.++|++|++.|||..|.|++|+|++++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 4567899999999999999999999999999999999999876543
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=4.5e-16 Score=143.74 Aligned_cols=103 Identities=24% Similarity=0.400 Sum_probs=91.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
..++++|||+|||.++++++|+++|++||.|..|.+ .+.++|||||+|.+.++|++|++.|+|..+.|+.|.|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 346799999999999999999999999999999985 566789999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCc
Q 003400 267 KDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 303 (823)
Q Consensus 267 k~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~ 303 (823)
+... .+++...++++|+++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4321 467778899999999999984
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=2.3e-15 Score=139.67 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=71.8
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
.++|||+|||+++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++||+.|||..|.|++|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 4689999999999999999999999999999763 3468999999999999999999999999999999999998765
Q ss_pred ccc
Q 003400 354 ARR 356 (823)
Q Consensus 354 ~r~ 356 (823)
.+.
T Consensus 85 ~~~ 87 (115)
T 4f25_A 85 ERE 87 (115)
T ss_dssp C--
T ss_pred ccc
Confidence 543
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=138.70 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=75.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+||++++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999999976 46789999999999999999999999999999999999998
Q ss_pred CCcccchh
Q 003400 351 PGGARRNL 358 (823)
Q Consensus 351 ~~~~r~~~ 358 (823)
.+..++.+
T Consensus 85 ~~~~~~~~ 92 (110)
T 3s8s_A 85 KGQQRMKY 92 (110)
T ss_dssp TTHHHHHH
T ss_pred CCcHHHHH
Confidence 77655443
No 45
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=2.7e-15 Score=158.37 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=116.3
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE-EEeccCccCcccceeEeeecCccccc----cccccccCCCCccccCCCCCC
Q 003400 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYG 188 (823)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~dlFs~~G~v-~V~~d~~es~~~g~~~v~~~e~~~a~----~~~~~~l~n~~~~~~~~~~~~ 188 (823)
.+.++|++||.++++.++.++|+.+|.| .|.+ ...++++++.|.+...|. .+++..+.+....+...
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i----~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a---- 93 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI----NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA---- 93 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE----eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec----
Confidence 4689999999999999999999999997 3322 234689999999876655 24444444443333322
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCC-ccc---ccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNK-PLR---RRKLD 260 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~-~l~---gr~L~ 260 (823)
.+.++|||+|||..+|+++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|++.|++. .+. +++|.
T Consensus 94 -~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 -THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp -CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred -ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 35789999999999999999999999999999874 5668999999999999999999999554 443 89999
Q ss_pred ccccCCCC
Q 003400 261 IHFSIPKD 268 (823)
Q Consensus 261 V~~a~pk~ 268 (823)
|.++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987653
No 46
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=135.54 Aligned_cols=94 Identities=24% Similarity=0.364 Sum_probs=81.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 272 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~ 272 (823)
++|||+|||.++|+++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..+.|++|.|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999986544899999999999999999999999999999999999987653221
Q ss_pred C------CCCccceeeecCC
Q 003400 273 K------DLNQGTLVVFNLD 286 (823)
Q Consensus 273 ~------~~~~~tLfV~NLp 286 (823)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1224689999997
No 47
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.4e-15 Score=134.56 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--CccccccccccccCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSIP 266 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng--~~l~gr~L~V~~a~p 266 (823)
..+.++|||+|||+++|+++|+++|++||+|.+|++.. .+|||||+|.+.++|++|++.|++ ..|.|++|+|.|+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 45789999999999999999999999999999998643 489999999999999999998864 789999999999987
Q ss_pred CCCCC
Q 003400 267 KDNPS 271 (823)
Q Consensus 267 k~~~~ 271 (823)
+....
T Consensus 92 ~~~~~ 96 (105)
T 1sjq_A 92 KELKT 96 (105)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 66543
No 48
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=133.66 Aligned_cols=80 Identities=13% Similarity=0.269 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCc--cccccccccccC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 265 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~--l~gr~L~V~~a~ 265 (823)
...|+++|||+|||.++|+++|+++|++||.|.+|++. +.||||||+|.+.++|++|++.|++.. +.|++|+|+|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 34588999999999999999999999999999999764 478999999999999999999999876 779999999997
Q ss_pred CCC
Q 003400 266 PKD 268 (823)
Q Consensus 266 pk~ 268 (823)
+++
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 49
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=6.5e-15 Score=145.13 Aligned_cols=123 Identities=19% Similarity=0.285 Sum_probs=73.0
Q ss_pred EEeCCHHHHHHHHHHhcCCccc--cccccccccCCCC----------------CCCCCCCCccceeeecCCCCCCHHHHH
Q 003400 234 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD----------------NPSDKDLNQGTLVVFNLDPSVSNEDLR 295 (823)
Q Consensus 234 V~F~~~e~A~~Ai~~Lng~~l~--gr~L~V~~a~pk~----------------~~~~~~~~~~tLfV~NLp~~vteedL~ 295 (823)
.+|.+.++|+.|+..|++.... |+.+...++.... .........++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999887665 5555554421100 011122345689999999999999999
Q ss_pred HHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccc
Q 003400 296 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (823)
Q Consensus 296 ~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~ 356 (823)
++|++||.|..|++ ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999976 34568999999999999999999999999999999999998766443
No 50
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=1.3e-14 Score=134.00 Aligned_cols=102 Identities=21% Similarity=0.405 Sum_probs=89.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
..++|||+|||.++++++|+++|++||.|..|++ .+.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3569999999999999999999999999999987 45678999999999999999999999999999999999998765
Q ss_pred ccchhhhccccccCHHHHHHHHhhcCCC
Q 003400 354 ARRNLMLQLNQELEQDESRILQHQVGSP 381 (823)
Q Consensus 354 ~r~~~~~ql~~~~~~~~l~~~f~~~GsP 381 (823)
.. .++.....++++..++.++|..
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCC
Confidence 33 4455667788899999999854
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=133.86 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=70.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhc-CCcccccccccccc
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ-NKPLRRRKLDIHFS 264 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Ln-g~~l~gr~L~V~~a 264 (823)
+++|||+|||.++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.++ +..+.|++|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 7988873 46789999999999999999999874 56799999999999
Q ss_pred CCCCCC
Q 003400 265 IPKDNP 270 (823)
Q Consensus 265 ~pk~~~ 270 (823)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=134.44 Aligned_cols=78 Identities=18% Similarity=0.395 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 357899999999999999999999999999999984 478899999999999999999999999999999999999
Q ss_pred cCC
Q 003400 264 SIP 266 (823)
Q Consensus 264 a~p 266 (823)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 854
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=129.30 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999985 566889999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003400 264 SIPKDNP 270 (823)
Q Consensus 264 a~pk~~~ 270 (823)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876543
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=129.09 Aligned_cols=80 Identities=28% Similarity=0.401 Sum_probs=74.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999987 4567899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003400 350 RPGGA 354 (823)
Q Consensus 350 ~~~~~ 354 (823)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88754
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=128.34 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=73.9
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
....++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456799999999999999999999999999999763 556899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003400 350 RPGGA 354 (823)
Q Consensus 350 ~~~~~ 354 (823)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88753
No 56
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=135.00 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=75.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--Ccccccccccc
Q 003400 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIH 262 (823)
Q Consensus 185 ~~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng--~~l~gr~L~V~ 262 (823)
......++++|||+|||+++|+++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.|++ ..|.|++|+|.
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 334456789999999999999999999999999999998643 589999999999999999998874 68999999999
Q ss_pred ccCCCCCCCC
Q 003400 263 FSIPKDNPSD 272 (823)
Q Consensus 263 ~a~pk~~~~~ 272 (823)
|+.++.....
T Consensus 103 ~a~~k~~~~~ 112 (119)
T 2ad9_A 103 FSNHKELKTD 112 (119)
T ss_dssp ECSSSSCCCC
T ss_pred EccCCCCCcc
Confidence 9987665443
No 57
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=3.1e-14 Score=125.78 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999875 45688999999999999999999999999999999999998
Q ss_pred CCCC
Q 003400 266 PKDN 269 (823)
Q Consensus 266 pk~~ 269 (823)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 58
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=4.3e-15 Score=132.24 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=69.7
Q ss_pred cceeeecCCCCCCHHHHHHHhcccC-ceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhC-CCccCCceEEEEecC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIAGKRIKLEPSR 350 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG-~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~Ln-G~~i~Gr~I~V~~s~ 350 (823)
++|||+|||+++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++|++.|+ +..+.|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7999875 46789999999999999999999875 568999999999998
Q ss_pred CCcc
Q 003400 351 PGGA 354 (823)
Q Consensus 351 ~~~~ 354 (823)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 59
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=129.48 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
.....+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999999999999999999999999999976 456789999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003400 349 SRPGGAR 355 (823)
Q Consensus 349 s~~~~~r 355 (823)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887543
No 60
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-14 Score=130.23 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=73.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCC--ccccccccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIHF 263 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~--~l~gr~L~V~~ 263 (823)
+....++++|||+|||.++++++|+++|++||.|..|.+.. .||||||+|.+.++|++|++.|++. .+.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 33456789999999999999999999999999999998643 5899999999999999999998765 48999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+.++..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 987553
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-14 Score=128.71 Aligned_cols=82 Identities=23% Similarity=0.455 Sum_probs=74.4
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC------CCcccEEEEEEcCHHHHHHHHHHh-CCCccCCceEE
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIK 345 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~------~~srG~aFVeF~d~e~A~kAl~~L-nG~~i~Gr~I~ 345 (823)
.....++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.| ||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 34456899999999999999999999999999999873 446899999999999999999999 99999999999
Q ss_pred EEecCCCcc
Q 003400 346 LEPSRPGGA 354 (823)
Q Consensus 346 V~~s~~~~~ 354 (823)
|++++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999988754
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.7e-14 Score=128.55 Aligned_cols=83 Identities=16% Similarity=0.302 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567899999999999999999999999999999984 5668899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003400 262 HFSIPKDN 269 (823)
Q Consensus 262 ~~a~pk~~ 269 (823)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.7e-14 Score=128.84 Aligned_cols=83 Identities=25% Similarity=0.484 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEeCCHHHHHHHHHHh-cCCccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 259 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~------~~ksrG~AFV~F~~~e~A~~Ai~~L-ng~~l~gr~L 259 (823)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999999999999999999999999985 4457899999999999999999999 9999999999
Q ss_pred cccccCCCCC
Q 003400 260 DIHFSIPKDN 269 (823)
Q Consensus 260 ~V~~a~pk~~ 269 (823)
+|.|+.++..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987654
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.6e-14 Score=129.80 Aligned_cols=81 Identities=30% Similarity=0.469 Sum_probs=73.4
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
....++|||+|||.++++++|+++|++||.|..|++ ++.+++||||+|.+.++|++|++.||+..|.|+.|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345679999999999999999999999999999887 344689999999999999999999999999999999999987
Q ss_pred Ccc
Q 003400 352 GGA 354 (823)
Q Consensus 352 ~~~ 354 (823)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 65
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=125.48 Aligned_cols=77 Identities=18% Similarity=0.390 Sum_probs=69.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
...+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4568999999999999999999999999999976 45578999999999999999999999999999999999998
Q ss_pred CC
Q 003400 351 PG 352 (823)
Q Consensus 351 ~~ 352 (823)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 66
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=126.86 Aligned_cols=82 Identities=23% Similarity=0.470 Sum_probs=74.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ |++..+.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3457899999999999999999999999999999985 35689999999999999999999 99999999999999
Q ss_pred ccCCCCCC
Q 003400 263 FSIPKDNP 270 (823)
Q Consensus 263 ~a~pk~~~ 270 (823)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.3e-14 Score=129.28 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
....+.++|||+|||.++|+++|+++|++||.|..|++ ..+++|||||+|.+.++|++|++.|++..|.|++|.|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34557799999999999999999999999999999885 4557899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003400 265 IPKDN 269 (823)
Q Consensus 265 ~pk~~ 269 (823)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 68
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=128.50 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=74.9
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
....++|||+|||.++++++|+++|++||.|..|++. +.+++||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4466799999999999999999999999999999763 4678999999999999999999999999999999999998
Q ss_pred CCccc
Q 003400 351 PGGAR 355 (823)
Q Consensus 351 ~~~~r 355 (823)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87644
No 69
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=130.29 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=70.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCc--cCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~--i~Gr~I~V~~s~~~~ 353 (823)
+.++|||+|||.++|+++|+++|++||.|.+|++. +.||+|||+|.+.++|.+|++.|++.. +.|++|+|+||+++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 46799999999999999999999999999999986 468999999999999999999999875 789999999998753
No 70
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.5e-14 Score=127.78 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=68.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
..-|||+||++.+|+++|+++|.+||+|.++++. .++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4579999999999999999999999999999985 47999999999999999999999999999999999998
No 71
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=133.11 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=71.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG--~~i~Gr~I~V~~s~~~~ 353 (823)
..++|||+|||+++|+++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.|++ ..|.|++|+|++++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 457999999999999999999999999999999864 489999999999999999998874 78999999999998765
Q ss_pred cc
Q 003400 354 AR 355 (823)
Q Consensus 354 ~r 355 (823)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 72
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.1e-14 Score=125.81 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.++++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999984 3567899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003400 265 IPKDNP 270 (823)
Q Consensus 265 ~pk~~~ 270 (823)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 73
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=125.91 Aligned_cols=78 Identities=18% Similarity=0.403 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999884 4567899999999999999999999999999999999999
Q ss_pred CCC
Q 003400 265 IPK 267 (823)
Q Consensus 265 ~pk 267 (823)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 74
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=2.9e-14 Score=123.40 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=70.8
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
.+|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999976 3566899999999999999999999999999999999999876
Q ss_pred c
Q 003400 353 G 353 (823)
Q Consensus 353 ~ 353 (823)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4e-14 Score=127.33 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457799999999999999999999999999999884 356789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003400 264 SIPKD 268 (823)
Q Consensus 264 a~pk~ 268 (823)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 76
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=128.21 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=74.6
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 445689999999999999999999999999999976 456789999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003400 349 SRPGGAR 355 (823)
Q Consensus 349 s~~~~~r 355 (823)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887543
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.52 E-value=7.9e-15 Score=132.01 Aligned_cols=76 Identities=22% Similarity=0.396 Sum_probs=68.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCc--eEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC----ccCCceE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGKRI 344 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~--I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~----~i~Gr~I 344 (823)
.-.||||+|||+++|+++|+++|++||. |.+|++ ++.++|||||+|.+.++|++|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3469999999999999999999999995 567764 4678999999999999999999999997 4899999
Q ss_pred EEEecCC
Q 003400 345 KLEPSRP 351 (823)
Q Consensus 345 ~V~~s~~ 351 (823)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 78
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=2.8e-14 Score=123.53 Aligned_cols=77 Identities=27% Similarity=0.458 Sum_probs=71.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
+.+|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999874 466799999999999999999999999999999999999986
Q ss_pred CC
Q 003400 267 KD 268 (823)
Q Consensus 267 k~ 268 (823)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 79
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.1e-14 Score=128.80 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc--CCccccccccccccC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSI 265 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Ln--g~~l~gr~L~V~~a~ 265 (823)
...++++|||+|||.++++++|+++|++||.|..|.+.. .+|||||+|.+.++|++|++.|+ +..+.|++|+|.|+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 345789999999999999999999999999999997643 58999999999999999999875 567999999999998
Q ss_pred CCCCC
Q 003400 266 PKDNP 270 (823)
Q Consensus 266 pk~~~ 270 (823)
++...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76543
No 80
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=2.5e-14 Score=127.78 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
|+++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999985 35679999999999999999999999999999999999998
Q ss_pred CCC
Q 003400 266 PKD 268 (823)
Q Consensus 266 pk~ 268 (823)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 81
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.3e-14 Score=125.48 Aligned_cols=78 Identities=26% Similarity=0.442 Sum_probs=71.9
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999763 56789999999999999999999999999999999999
Q ss_pred cCC
Q 003400 349 SRP 351 (823)
Q Consensus 349 s~~ 351 (823)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 82
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.7e-14 Score=127.57 Aligned_cols=83 Identities=30% Similarity=0.403 Sum_probs=74.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCC---CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~---~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
....++|||+|||.++++++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34567999999999999999999999999999998732 367999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003400 351 PGGARR 356 (823)
Q Consensus 351 ~~~~r~ 356 (823)
++..++
T Consensus 92 ~~~~~~ 97 (103)
T 2cqi_A 92 TPSSQK 97 (103)
T ss_dssp CTTCCC
T ss_pred CCcccc
Confidence 876443
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=128.81 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..+.|++|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567899999999999999999999999999999984 3668899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003400 262 HFSIPKDN 269 (823)
Q Consensus 262 ~~a~pk~~ 269 (823)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99986554
No 84
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=124.37 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
..+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|+|.|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 3567999999999999999999999999999999875 7999999999999999999999999999999999998765
Q ss_pred CC
Q 003400 269 NP 270 (823)
Q Consensus 269 ~~ 270 (823)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 85
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=1.9e-14 Score=133.20 Aligned_cols=90 Identities=19% Similarity=0.128 Sum_probs=71.7
Q ss_pred ccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccC-ceEEEEeC-CCcccEEEEEEcCHHHHHHHHHHh
Q 003400 257 RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET-PHKRHHKFIEFYDVRAAEAALKSL 334 (823)
Q Consensus 257 r~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG-~I~~iri~-~~srG~aFVeF~d~e~A~kAl~~L 334 (823)
.++.+.|..+.. ...+|||+|||+++++++|+++|++|| .|..+++. ..++|||||+|.+.++|++||+.|
T Consensus 15 ~~~~~~~~~~p~-------~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 15 VPRGSHMSKLPA-------KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERL 87 (111)
T ss_dssp ----------CC-------CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHT
T ss_pred eecchhcCCCCC-------CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHc
Confidence 355666664321 356999999999999999999999999 99999884 568999999999999999999999
Q ss_pred CCCccCCceEEEEecCCCc
Q 003400 335 NRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 335 nG~~i~Gr~I~V~~s~~~~ 353 (823)
||..+.|+.|+|++++.+.
T Consensus 88 ng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 88 NNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp TTEEETTEEEEEEESCC--
T ss_pred CCCEECCeEEEEEECCCCC
Confidence 9999999999999997653
No 86
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=5.4e-14 Score=129.74 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
.....+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999976 455689999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003400 349 SRPGGAR 355 (823)
Q Consensus 349 s~~~~~r 355 (823)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9887543
No 87
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=127.39 Aligned_cols=83 Identities=18% Similarity=0.408 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4457899999999999999999999999999999885 3578999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003400 265 IPKDNP 270 (823)
Q Consensus 265 ~pk~~~ 270 (823)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876654
No 88
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=6.3e-14 Score=129.27 Aligned_cols=83 Identities=17% Similarity=0.394 Sum_probs=75.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4457899999999999999999999999999999884 45678999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003400 263 FSIPKDNP 270 (823)
Q Consensus 263 ~a~pk~~~ 270 (823)
|+.++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=3e-14 Score=131.60 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=74.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35579999999999999999999999999999876 4567899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 887643
No 90
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-14 Score=128.43 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3457899999999999999999999999999999984 45788999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 003400 263 FSIPKDN 269 (823)
Q Consensus 263 ~a~pk~~ 269 (823)
|+.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 91
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.52 E-value=3.6e-14 Score=123.43 Aligned_cols=75 Identities=27% Similarity=0.462 Sum_probs=69.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4579999999999999999999999999999976 34578999999999999999999999999999999999985
No 92
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.3e-14 Score=125.77 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=73.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++ ||+..|.|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999873 4578999999999999999998 9999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 887643
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=129.38 Aligned_cols=81 Identities=17% Similarity=0.448 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999984 36779999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003400 263 FSIPKD 268 (823)
Q Consensus 263 ~a~pk~ 268 (823)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=127.49 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~--------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.+.++|||+|||.++++++|+++|++||+|..|++. ++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 467999999999999999999999999999998742 267899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003400 262 HFSIPKDNP 270 (823)
Q Consensus 262 ~~a~pk~~~ 270 (823)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 95
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.2e-14 Score=125.11 Aligned_cols=79 Identities=27% Similarity=0.388 Sum_probs=72.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3569999999999999999999999999999976 35578999999999999999999999999999999999998
Q ss_pred CCcc
Q 003400 351 PGGA 354 (823)
Q Consensus 351 ~~~~ 354 (823)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 96
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.7e-14 Score=126.15 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
....+.++|||+|||.++++++|+++|++||.|..|++. ..++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999852 34689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003400 264 SIPKDNP 270 (823)
Q Consensus 264 a~pk~~~ 270 (823)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 97
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=7.8e-14 Score=126.43 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccc---ccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLDI 261 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g---r~L~V 261 (823)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.+ ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999884 45668999999999999999999999999998 99999
Q ss_pred cccCCCCCC
Q 003400 262 HFSIPKDNP 270 (823)
Q Consensus 262 ~~a~pk~~~ 270 (823)
.|+.++...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999876543
No 98
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=4.7e-14 Score=126.01 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
.++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999873 56689999999999999999999999999999999999998
Q ss_pred Ccc
Q 003400 352 GGA 354 (823)
Q Consensus 352 ~~~ 354 (823)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 764
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.8e-14 Score=126.95 Aligned_cols=83 Identities=18% Similarity=0.419 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
....+.++|||+|||.++++++|+++|++||.|..|++. ..++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345678999999999999999999999999999999852 34689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=6.5e-14 Score=125.34 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=72.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccC--CceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA--GKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~--Gr~I~V~~s~~~~ 353 (823)
..++|||+|||.++++++|+++|++||.|.+|++... ++||||+|.+.++|++|++.|||..+. |++|+|++++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4579999999999999999999999999999998643 899999999999999999999999999 9999999998865
Q ss_pred c
Q 003400 354 A 354 (823)
Q Consensus 354 ~ 354 (823)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=3.3e-14 Score=123.67 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..+.|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357799999999999999999999999999999984 456899999999999999999999999999999999998
Q ss_pred cC
Q 003400 264 SI 265 (823)
Q Consensus 264 a~ 265 (823)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 102
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=7.1e-14 Score=126.70 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC---ceEEEE
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG---KRIKLE 347 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G---r~I~V~ 347 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.| +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34679999999999999999999999999999976 34558999999999999999999999999998 999999
Q ss_pred ecCCCccc
Q 003400 348 PSRPGGAR 355 (823)
Q Consensus 348 ~s~~~~~r 355 (823)
+++++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99987654
No 103
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.6e-14 Score=128.88 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=73.2
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456799999999999999999999999999999763 56689999999999999999999999999999999999
Q ss_pred cCCCc
Q 003400 349 SRPGG 353 (823)
Q Consensus 349 s~~~~ 353 (823)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 104
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=3.5e-14 Score=131.07 Aligned_cols=83 Identities=16% Similarity=0.360 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456799999999999999999999999999998874 56788999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003400 263 FSIPKDNP 270 (823)
Q Consensus 263 ~a~pk~~~ 270 (823)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 105
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=123.97 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=71.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCC-----C-cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-----H-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~-----~-srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
..++|||+|||.++++++|+++|++||.|..+++.. . ++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999998631 2 7899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003400 350 RPGGA 354 (823)
Q Consensus 350 ~~~~~ 354 (823)
++...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.4e-14 Score=127.06 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=71.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHh--CCCccCCceEEEEecCCC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL--NRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~L--nG~~i~Gr~I~V~~s~~~ 352 (823)
...++|||+|||.++++++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.| ++..+.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 3567999999999999999999999999999998864 4899999999999999999987 467899999999999876
Q ss_pred ccc
Q 003400 353 GAR 355 (823)
Q Consensus 353 ~~r 355 (823)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 543
No 107
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.4e-14 Score=124.10 Aligned_cols=76 Identities=26% Similarity=0.430 Sum_probs=71.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
..++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 46799999999999999999999999999999986 79999999999999999999999999999999999988654
No 108
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.2e-14 Score=127.89 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=73.5
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356799999999999999999999999999999863 567899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003400 350 RPGGA 354 (823)
Q Consensus 350 ~~~~~ 354 (823)
++...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87653
No 109
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.2e-14 Score=123.95 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=70.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356799999999999999999999999999999873 456899999999999999999999999999999999998
Q ss_pred C
Q 003400 350 R 350 (823)
Q Consensus 350 ~ 350 (823)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 110
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.51 E-value=5.7e-14 Score=128.89 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34557799999999999999999999999999999874 3567899999999999999999999999999999999
Q ss_pred cccCCCC
Q 003400 262 HFSIPKD 268 (823)
Q Consensus 262 ~~a~pk~ 268 (823)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9997654
No 111
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=129.76 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCC--ccccccccccccC
Q 003400 189 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIHFSI 265 (823)
Q Consensus 189 e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~--~l~gr~L~V~~a~ 265 (823)
..++++|||+|||. ++|+++|+++|++||.|.+|++. +.+|||||+|.+.++|++|++.|++. .|.|++|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 35789999999999 99999999999999999999864 46799999999999999999999875 4899999999997
Q ss_pred CCC
Q 003400 266 PKD 268 (823)
Q Consensus 266 pk~ 268 (823)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 112
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.6e-14 Score=127.05 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=72.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~--------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
..++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45699999999999999999999999999999763 2568999999999999999999999999999999999
Q ss_pred ecCCCcc
Q 003400 348 PSRPGGA 354 (823)
Q Consensus 348 ~s~~~~~ 354 (823)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9988653
No 113
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6.3e-14 Score=128.17 Aligned_cols=84 Identities=20% Similarity=0.447 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhc------CCccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ------NKPLR 255 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Ln------g~~l~ 255 (823)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34567899999999999999999999999999999985 35689999999999999999999999 99999
Q ss_pred cccccccccCCCCCC
Q 003400 256 RRKLDIHFSIPKDNP 270 (823)
Q Consensus 256 gr~L~V~~a~pk~~~ 270 (823)
|++|.|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 114
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=4.7e-14 Score=129.12 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=74.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999986 3456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 877644
No 115
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=3.6e-14 Score=130.07 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=81.4
Q ss_pred ccccccccccCCCCCCCCCCCCccceeeecCCCC-CCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 003400 255 RRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 255 ~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~-vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~ 333 (823)
.|.+|.+..+.+..... .....++|||+|||.+ +++++|+++|++||.|..|++ +++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~~-~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND-PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSCC-CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCCC-CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 46677777765543322 2234579999999999 999999999999999999998 689999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 003400 334 LNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 334 LnG~~i~Gr~I~V~~s~~~~ 353 (823)
|||..|.|+.|+|+++++..
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998654
No 116
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=9.1e-14 Score=127.12 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=74.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhC------CCccCCce
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLN------RSDIAGKR 343 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~Ln------G~~i~Gr~ 343 (823)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356799999999999999999999999999999873 5679999999999999999999999 99999999
Q ss_pred EEEEecCCCccc
Q 003400 344 IKLEPSRPGGAR 355 (823)
Q Consensus 344 I~V~~s~~~~~r 355 (823)
|+|++++++..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999887644
No 117
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=8.9e-14 Score=124.47 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccc--cccccccccCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 266 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~--gr~L~V~~a~p 266 (823)
..++++|||+|||.++++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.|++..+. |++|.|.|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 35679999999999999999999999999999998654 3899999999999999999999999999 99999999987
Q ss_pred CC
Q 003400 267 KD 268 (823)
Q Consensus 267 k~ 268 (823)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 118
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.50 E-value=1.1e-14 Score=165.16 Aligned_cols=145 Identities=24% Similarity=0.349 Sum_probs=103.9
Q ss_pred HHHHhhcCCCEEEEEe-------CCCcccEE-----EEEeCCHHHHHHHHHHhcCCccccc-----------c--ccccc
Q 003400 209 LRALFEQYGDIRTLYT-------ACKHRGFV-----MISYYDIRAARTAMRALQNKPLRRR-----------K--LDIHF 263 (823)
Q Consensus 209 Lr~lFs~fG~I~~v~~-------~~ksrG~A-----FV~F~~~e~A~~Ai~~Lng~~l~gr-----------~--L~V~~ 263 (823)
|..+|.++|+|..|.. ..+..+|+ |+.|....++..++..++......+ . ..+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7889999999988731 11233444 7788776655544433322221111 0 01111
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCc
Q 003400 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (823)
Q Consensus 264 a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (823)
..+...+.......++|||+|||..+|+++|+++|++||.|+.|++ ++.++|||||+|.+.++|.+||..|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222223334579999999999999999999999999999976 45679999999999999999999999999
Q ss_pred cCCceEEEEecCCCc
Q 003400 339 IAGKRIKLEPSRPGG 353 (823)
Q Consensus 339 i~Gr~I~V~~s~~~~ 353 (823)
|.|+.|.|.++.+..
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 119
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5e-14 Score=127.03 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457799999999999999999999999999999985 345789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 120
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=7.9e-14 Score=129.61 Aligned_cols=78 Identities=28% Similarity=0.464 Sum_probs=72.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999976 455789999999999999999999999999999999999987
Q ss_pred Cc
Q 003400 352 GG 353 (823)
Q Consensus 352 ~~ 353 (823)
+.
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 121
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=127.67 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=74.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35679999999999999999999999999999986 3457899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887543
No 122
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.9e-14 Score=125.70 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=72.1
Q ss_pred CccceeeecCCCCCCHHHHH----HHhcccCceEEEEeCCC--cccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~----~~Fs~fG~I~~iri~~~--srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
+..+|||+|||.++++++|+ ++|++||.|.+|++... .++||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45799999999999999999 99999999999988522 2899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003400 350 RPGGA 354 (823)
Q Consensus 350 ~~~~~ 354 (823)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 123
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.50 E-value=5.4e-14 Score=124.27 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=73.0
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri---~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
...+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4579999999999999999999999999999976 4557899999999999999999999999999999999999886
Q ss_pred cc
Q 003400 353 GA 354 (823)
Q Consensus 353 ~~ 354 (823)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6.5e-14 Score=128.10 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=70.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC--ccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~--~i~Gr~I~V~~s~~~~ 353 (823)
..++|||+|||.++++++|+++|++||.|.+|++.. .+|||||+|.+.++|.+|++.|++. .|.|++|+|+|++++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 457999999999999999999999999999998864 4899999999999999999998764 5999999999998765
Q ss_pred c
Q 003400 354 A 354 (823)
Q Consensus 354 ~ 354 (823)
.
T Consensus 93 ~ 93 (104)
T 1wex_A 93 I 93 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 125
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=127.67 Aligned_cols=80 Identities=23% Similarity=0.495 Sum_probs=73.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999999999873 4468999999999999999999999999999999999998
Q ss_pred CCccc
Q 003400 351 PGGAR 355 (823)
Q Consensus 351 ~~~~r 355 (823)
++...
T Consensus 91 ~~~~~ 95 (102)
T 1x5s_A 91 KSSDN 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 126
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=125.35 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc-CCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCc-ccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDIH 262 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~-fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~-l~gr~L~V~ 262 (823)
..+.++|||+|||.++|+++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. +.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456799999999999999999999999 999999885 56689999999999999999999999999 999999999
Q ss_pred ccCCCCC
Q 003400 263 FSIPKDN 269 (823)
Q Consensus 263 ~a~pk~~ 269 (823)
++.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9977654
No 127
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=125.14 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=73.6
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCC---CcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~---~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
....++|||+|||.++++++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34567999999999999999999999999999998742 358999999999999999999999999999999999998
Q ss_pred CCcc
Q 003400 351 PGGA 354 (823)
Q Consensus 351 ~~~~ 354 (823)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8754
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=126.63 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=75.3
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
.....+|||+|||.++++++|+++|++||.|..+..++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 34567999999999999999999999999998887778889999999999999999999999999999999999998876
Q ss_pred cc
Q 003400 354 AR 355 (823)
Q Consensus 354 ~r 355 (823)
.+
T Consensus 93 ~~ 94 (96)
T 1fjc_A 93 GT 94 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=5.9e-14 Score=124.39 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
....+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|++|+|.++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345678999999999999999999999999999999874 56999999999999999999999999999999999987
Q ss_pred CCCC
Q 003400 267 KDNP 270 (823)
Q Consensus 267 k~~~ 270 (823)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 130
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.5e-14 Score=126.49 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE-Ee-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-YT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v-~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
.+.++|||+|||.++++++|+++|++||.|..| ++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999887 64 456789999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003400 264 SIPKDNP 270 (823)
Q Consensus 264 a~pk~~~ 270 (823)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 131
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.49 E-value=1.5e-14 Score=128.02 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=65.9
Q ss_pred cceeeecCCCCCCHHHHHHHhcccC--ceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG--~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
.+|||+|||.++|+++|+++|++|| .|.++++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 8988875 56789999999999999999999999999999999999998
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.4e-14 Score=127.32 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
...++|||+|||.++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 356899999999999999999999999999999864 6899999999999999999999999999999999999875
No 133
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.9e-14 Score=125.15 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999984 36788999999999999999999999999999999999
Q ss_pred ccCC
Q 003400 263 FSIP 266 (823)
Q Consensus 263 ~a~p 266 (823)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9853
No 134
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=7.5e-14 Score=126.76 Aligned_cols=82 Identities=17% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCcc---CCceEE
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIK 345 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i---~Gr~I~ 345 (823)
.....+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 345679999999999999999999999999999986 355789999999999999999999999987 899999
Q ss_pred EEecCCCccc
Q 003400 346 LEPSRPGGAR 355 (823)
Q Consensus 346 V~~s~~~~~r 355 (823)
|++++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887543
No 135
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=7e-14 Score=126.94 Aligned_cols=83 Identities=24% Similarity=0.475 Sum_probs=74.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcc---cccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRK 258 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l---~gr~ 258 (823)
..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34567899999999999999999999999999999984 356889999999999999999999999987 8999
Q ss_pred ccccccCCCCC
Q 003400 259 LDIHFSIPKDN 269 (823)
Q Consensus 259 L~V~~a~pk~~ 269 (823)
|+|.++.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 136
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=6.6e-14 Score=124.46 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=71.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 356799999999999999999999999999999763 4568999999999999999999999999999999999987
Q ss_pred C
Q 003400 351 P 351 (823)
Q Consensus 351 ~ 351 (823)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 137
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.1e-14 Score=121.66 Aligned_cols=79 Identities=22% Similarity=0.410 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHh-cCCcccccccccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFS 264 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~L-ng~~l~gr~L~V~~a 264 (823)
+..+.+.++|||+|||.++++++|+++|++||.|..|++. +++|||||+|.+.++|++|++.| ++..+.|++|+|+|+
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3345678999999999999999999999999999999864 46899999999999999999999 999999999999987
Q ss_pred C
Q 003400 265 I 265 (823)
Q Consensus 265 ~ 265 (823)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 138
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=9.2e-14 Score=123.13 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=72.2
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
....++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998765
Q ss_pred c
Q 003400 354 A 354 (823)
Q Consensus 354 ~ 354 (823)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 139
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.5e-14 Score=124.25 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999985 35678999999999999999999999999999999999
Q ss_pred ccC
Q 003400 263 FSI 265 (823)
Q Consensus 263 ~a~ 265 (823)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 140
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.4e-14 Score=127.41 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 457899999999999999999999999999999984 356899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003400 264 SIPKDNP 270 (823)
Q Consensus 264 a~pk~~~ 270 (823)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 141
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=8.5e-14 Score=127.75 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=73.1
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999976 355689999999999999999999999999999999999
Q ss_pred cCCCc
Q 003400 349 SRPGG 353 (823)
Q Consensus 349 s~~~~ 353 (823)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 142
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.3e-14 Score=126.05 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
...++|||+|||.++++++|+++|++||.|....+++.++|||||+|.+.++|++|++.|||..|.|++|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3457999999999999999999999999996333456789999999999999999999999999999999999998864
No 143
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=131.80 Aligned_cols=82 Identities=28% Similarity=0.425 Sum_probs=74.6
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|+.||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999976 355689999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003400 349 SRPGGAR 355 (823)
Q Consensus 349 s~~~~~r 355 (823)
++++..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9987644
No 144
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=129.02 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC--EEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCc----cccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD--IRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP----LRRR 257 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~--I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~----l~gr 257 (823)
+..-.||||+|||+++|+++|+++|++||. |.+|++ +++++|||||+|.+.++|++|++.|++.. +.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456689999999999999999999999995 456663 57899999999999999999999999974 8899
Q ss_pred cccccccCC
Q 003400 258 KLDIHFSIP 266 (823)
Q Consensus 258 ~L~V~~a~p 266 (823)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 145
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.3e-14 Score=128.92 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=69.6
Q ss_pred CccceeeecCCC-CCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC--ccCCceEEEEecCCC
Q 003400 276 NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPG 352 (823)
Q Consensus 276 ~~~tLfV~NLp~-~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~--~i~Gr~I~V~~s~~~ 352 (823)
..++|||+|||+ ++|+++|+++|++||.|.+|++.. .++||||+|.+.++|++|++.||+. .|.|++|+|.+++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 467999999999 999999999999999999999863 5799999999999999999999864 599999999999864
No 146
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.8e-14 Score=125.44 Aligned_cols=80 Identities=11% Similarity=0.352 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEE-EEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccc----
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK---- 258 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~-~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~---- 258 (823)
..++++|||+|||.++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 8874 4578899999999999999999999999999999
Q ss_pred ccccccCCCC
Q 003400 259 LDIHFSIPKD 268 (823)
Q Consensus 259 L~V~~a~pk~ 268 (823)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997654
No 147
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.3e-14 Score=125.90 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=72.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEE-Ee-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i-ri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
..++|||+|||.++++++|+++|++||.|..+ ++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999888 65 3456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887643
No 148
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=132.01 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=71.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~Ln--G~~i~Gr~I~V~~s~~~~ 353 (823)
..++|||+|||+++|+++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.|+ +..|.|++|+|++++++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 457899999999999999999999999999998854 48999999999999999999998 468999999999998876
Q ss_pred cc
Q 003400 354 AR 355 (823)
Q Consensus 354 ~r 355 (823)
.+
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 149
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=5.6e-14 Score=124.90 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
+..+.+.++|||+|||.++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344567799999999999999999999999999999884 3567899999999999999999999999999999999
Q ss_pred cccC
Q 003400 262 HFSI 265 (823)
Q Consensus 262 ~~a~ 265 (823)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9985
No 150
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.8e-14 Score=126.10 Aligned_cols=82 Identities=16% Similarity=0.372 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
....+.++|||+|||.++++++|+++|++|| |..|++. ++++|||||+|.+.++|++|+ .|++..|.|++|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3445779999999999999999999999999 9999852 677999999999999999999 8999999999999
Q ss_pred ccccCCCCCC
Q 003400 261 IHFSIPKDNP 270 (823)
Q Consensus 261 V~~a~pk~~~ 270 (823)
|.++.++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 151
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=5.3e-14 Score=129.21 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=72.7
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
.....++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34456899999999999999999999999999999986 899999999999999999999999999999999999887
Q ss_pred ccc
Q 003400 353 GAR 355 (823)
Q Consensus 353 ~~r 355 (823)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 152
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=3.7e-14 Score=125.23 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.+.-|||+||++.+||++|+++|.+||+|.++++ ..++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999986 348999999999999999999999999999999999987
No 153
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=7.6e-14 Score=125.37 Aligned_cols=79 Identities=30% Similarity=0.526 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
..+.++|||+|||.++++++|+++|++||+|..|++. +.+|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4567999999999999999999999999999999764 568999999999999999999999999999999999998654
No 154
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=122.38 Aligned_cols=77 Identities=29% Similarity=0.412 Sum_probs=71.7
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|+++++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 356799999999999999999999999999999986 56999999999999999999999999999999999987643
No 155
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=125.44 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=72.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....+|||+|||.++++++|+++|++|| |..|++. +.++|||||+|.+.++|++|+ .|||..|.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999 9999863 567899999999999999999 9999999999999999
Q ss_pred cCCCccc
Q 003400 349 SRPGGAR 355 (823)
Q Consensus 349 s~~~~~r 355 (823)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887644
No 156
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.2e-13 Score=124.20 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=71.1
Q ss_pred CCccceeeecCCC-CCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 275 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 275 ~~~~tLfV~NLp~-~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
...++|||+|||. ++++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3567999999998 99999999999999999999983 8999999999999999999999999999999999998753
No 157
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=9.2e-14 Score=131.77 Aligned_cols=82 Identities=24% Similarity=0.448 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999985 3578999999999999999999999999999999999
Q ss_pred cccCCCC
Q 003400 262 HFSIPKD 268 (823)
Q Consensus 262 ~~a~pk~ 268 (823)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 158
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.8e-14 Score=126.17 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=65.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
.+|||+|||.++|+++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 8888873 56789999999999999999999999999999999999998
Q ss_pred CCCC
Q 003400 266 PKDN 269 (823)
Q Consensus 266 pk~~ 269 (823)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 159
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=1.1e-13 Score=131.20 Aligned_cols=79 Identities=27% Similarity=0.435 Sum_probs=73.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999986 3567899999999999999999999999999999999999
Q ss_pred CCCc
Q 003400 350 RPGG 353 (823)
Q Consensus 350 ~~~~ 353 (823)
+++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8765
No 160
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=124.49 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=69.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~--------iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (823)
....+|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35679999999999999999999999999998 765 35678999999999999999999999999999
Q ss_pred ceEEEEecC
Q 003400 342 KRIKLEPSR 350 (823)
Q Consensus 342 r~I~V~~s~ 350 (823)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 161
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=7.4e-14 Score=127.77 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456799999999999999999999999999999985 4567899999999999999999999999999999999
Q ss_pred cccCCCC
Q 003400 262 HFSIPKD 268 (823)
Q Consensus 262 ~~a~pk~ 268 (823)
.|+.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997654
No 162
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.5e-14 Score=127.08 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=72.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
..++|||+|||.++++++|+++|++||.|..|++... +|||||+|.+.++|++|++.|||..|.|+.|+|++++++..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 4579999999999999999999999999999998654 89999999999999999999999999999999999988754
No 163
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=3.8e-14 Score=126.35 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
.+.+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|++..+.|++|.|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 44577999999999999999999999999999888667889999999999999999999999999999999999999775
Q ss_pred CC
Q 003400 268 DN 269 (823)
Q Consensus 268 ~~ 269 (823)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 164
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.47 E-value=8.1e-14 Score=135.63 Aligned_cols=82 Identities=28% Similarity=0.478 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 355789999999999999999999999999999984 567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003400 264 SIPKDNP 270 (823)
Q Consensus 264 a~pk~~~ 270 (823)
+.++...
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 165
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=120.43 Aligned_cols=76 Identities=30% Similarity=0.464 Sum_probs=70.4
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHh-CCCccCCceEEEEecC
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSR 350 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~L-nG~~i~Gr~I~V~~s~ 350 (823)
....++|||+|||.++++++|+++|++||.|..|++.. ++|||||+|.+.++|++|++.| +|..+.|++|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567999999999999999999999999999998863 5899999999999999999999 9999999999999985
No 166
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.9e-14 Score=131.79 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~--~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
..++++|||+|||.++++++|+ ++|++||+|.+|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4568999999999999999876 69999999999885 46789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003400 263 FSIPKD 268 (823)
Q Consensus 263 ~a~pk~ 268 (823)
|+.++.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997653
No 167
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=128.58 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
..+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356799999999999999999999999999999885 4567899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003400 265 IPKDN 269 (823)
Q Consensus 265 ~pk~~ 269 (823)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86653
No 168
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=8.9e-14 Score=121.54 Aligned_cols=78 Identities=12% Similarity=0.325 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
..++|||+|||.++++++|+++|++||.|..|.+. ++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999842 228899999999999999999999999999999999999
Q ss_pred CCCC
Q 003400 265 IPKD 268 (823)
Q Consensus 265 ~pk~ 268 (823)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 169
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=123.97 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
....++|||+|||.++++++|+++|++||.|....+..+++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34578999999999999999999999999996222467889999999999999999999999999999999999997654
No 170
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=131.61 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=72.7
Q ss_pred CccceeeecCCCCCCHHHHH----HHhcccCceEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~----~~Fs~fG~I~~iri--~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
..++|||+|||+.+++++|+ ++|++||.|.+|.+ ++.++|||||+|.+.++|.+|++.|||..|.|++|+|+|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 45789999999999999876 69999999999977 4578999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++...
T Consensus 108 ~~~~~~ 113 (127)
T 2a3j_A 108 ETPQSQ 113 (127)
T ss_dssp CCCCHH
T ss_pred cCcchh
Confidence 987643
No 171
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1e-13 Score=128.46 Aligned_cols=77 Identities=21% Similarity=0.397 Sum_probs=70.2
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999863 45689999999999999999999999999999999999
Q ss_pred cC
Q 003400 349 SR 350 (823)
Q Consensus 349 s~ 350 (823)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=4e-14 Score=134.50 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.2
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCcc
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGGA 354 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~-aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~s~~~~~ 354 (823)
-.|||+||++.+|+++|+++|++||.|.+|++..+++|+ |||+|.+.++|++|++.|||..|.| ++|+|+|+++..-
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 468899999999999999999999999999886666787 9999999999999999999999998 9999999998753
No 173
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=1.4e-13 Score=124.71 Aligned_cols=78 Identities=26% Similarity=0.492 Sum_probs=72.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r 355 (823)
..++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|+.|+|++++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 45799999999999999999999999999999985 679999999999999999999999999999999999887654
Q ss_pred c
Q 003400 356 R 356 (823)
Q Consensus 356 ~ 356 (823)
+
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 174
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=127.23 Aligned_cols=80 Identities=13% Similarity=0.303 Sum_probs=72.4
Q ss_pred CCCccceeeecCCCCCCHHHHH---HHhcccCceEEEEeCC--------CcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~---~~Fs~fG~I~~iri~~--------~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (823)
....++|||+|||+++++++|+ ++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 9999999999998632 3458999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003400 343 RIKLEPSRPGG 353 (823)
Q Consensus 343 ~I~V~~s~~~~ 353 (823)
+|+|++++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998764
No 175
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.2e-14 Score=128.29 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=73.0
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
.....++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34456799999999999999999999999999999874 345899999999999999999999999999999999999
Q ss_pred CCC
Q 003400 350 RPG 352 (823)
Q Consensus 350 ~~~ 352 (823)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 176
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=124.40 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=72.6
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
...++|||+|||.++++++|+++|++||.|..|++. ..+|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 356799999999999999999999999999999986 458999999999999999999999999999999999998764
No 177
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.5e-14 Score=126.67 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
..++|||+|||.++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35799999999999999999999999999999986 57899999999999999999999999999999999999863
No 178
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.3e-13 Score=122.25 Aligned_cols=77 Identities=27% Similarity=0.376 Sum_probs=71.5
Q ss_pred CCccceeeecCCCCCCHHHHHHHhccc--CceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~f--G~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
...++|||+|||.++++++|+++|++| |.|..|++. +|||||+|.+.++|++|++.|||..|.|++|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 346799999999999999999999999 999999874 789999999999999999999999999999999999886
Q ss_pred cc
Q 003400 353 GA 354 (823)
Q Consensus 353 ~~ 354 (823)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 179
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.7e-14 Score=121.22 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999984 4667999999999999999999999999999999999876
Q ss_pred C
Q 003400 265 I 265 (823)
Q Consensus 265 ~ 265 (823)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 180
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.47 E-value=1.2e-13 Score=125.05 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
..+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..|.|++|.|.|+.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 4567999999999999999999999999999999864 6799999999999999999999999999999999998765
Q ss_pred CC
Q 003400 269 NP 270 (823)
Q Consensus 269 ~~ 270 (823)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 181
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.6e-14 Score=124.53 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 189 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 189 e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
..++++|||+|||. ++++++|+++|++||.|..|.+ .+|||||+|.+.++|++|++.|++..+.|++|.|.++.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 45789999999998 9999999999999999999987 4899999999999999999999999999999999999766
Q ss_pred CCC
Q 003400 268 DNP 270 (823)
Q Consensus 268 ~~~ 270 (823)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 182
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.9e-13 Score=126.36 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 44567899999999999999999999999999999985 356889999999999999999999998 899999999
Q ss_pred cccCCCCCC
Q 003400 262 HFSIPKDNP 270 (823)
Q Consensus 262 ~~a~pk~~~ 270 (823)
+++.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999765443
No 183
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.1e-14 Score=125.76 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=74.0
Q ss_pred CccceeeecCCCCCCHHHHHHHhcc-cCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCc-cCCceEEEEec
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD-IAGKRIKLEPS 349 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~-fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~-i~Gr~I~V~~s 349 (823)
...+|||+|||.++|+++|+++|++ ||.|..|++ ++.++|||||+|.+.++|++|++.|||.. +.|+.|+|+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4579999999999999999999999 999999976 45679999999999999999999999999 99999999999
Q ss_pred CCCcccc
Q 003400 350 RPGGARR 356 (823)
Q Consensus 350 ~~~~~r~ 356 (823)
+++..++
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 8776443
No 184
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5.4e-14 Score=130.37 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC--CccccccccccccC
Q 003400 189 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 265 (823)
Q Consensus 189 e~~srtLfV~NLP~~-vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng--~~l~gr~L~V~~a~ 265 (823)
..++++|||+|||.+ +++++|+++|++||+|.+|++ .+++|||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 457899999999998 999999999999999999986 35799999999999999999998865 55999999999997
Q ss_pred CCCC
Q 003400 266 PKDN 269 (823)
Q Consensus 266 pk~~ 269 (823)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6543
No 185
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.47 E-value=1.1e-13 Score=129.75 Aligned_cols=84 Identities=18% Similarity=0.452 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999985 5667999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003400 262 HFSIPKDNP 270 (823)
Q Consensus 262 ~~a~pk~~~ 270 (823)
.|+.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999766543
No 186
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=8.2e-14 Score=125.49 Aligned_cols=83 Identities=19% Similarity=0.399 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
...+.++|||+|||.++++++|+++|++||.|.-+. .+++++|||||+|.+.++|++|++.|++..|.|+.|+|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 445789999999999999999999999999995443 2567899999999999999999999999999999999999987
Q ss_pred CCCC
Q 003400 267 KDNP 270 (823)
Q Consensus 267 k~~~ 270 (823)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 187
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=125.66 Aligned_cols=81 Identities=14% Similarity=0.291 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
..+.++|||+|||.++++++|+++|++||.|..|++... +|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 346789999999999999999999999999999986443 8999999999999999999999999999999999998765
Q ss_pred CC
Q 003400 269 NP 270 (823)
Q Consensus 269 ~~ 270 (823)
..
T Consensus 101 ~~ 102 (109)
T 1x4g_A 101 DM 102 (109)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 188
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=125.13 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccc-----cccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g-----r~L~V~ 262 (823)
.....++|||+|||.++++++|+++|++||+|..|++... |||||+|.+.++|++|++.|++..|.| ++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999986444 999999999999999999999999999 999999
Q ss_pred ccCCCCC
Q 003400 263 FSIPKDN 269 (823)
Q Consensus 263 ~a~pk~~ 269 (823)
++.++..
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987654
No 189
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=125.44 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=71.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCC-----ceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-----KRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G-----r~I~V~~s~ 350 (823)
...+|||+|||.++++++|+++|++||.|..|++... |||||+|.+.++|++||+.|||..|.| +.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4579999999999999999999999999999998644 999999999999999999999999999 999999998
Q ss_pred CCcc
Q 003400 351 PGGA 354 (823)
Q Consensus 351 ~~~~ 354 (823)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 190
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=1.5e-13 Score=123.62 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 188 GEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 188 ~e~~srtLfV~NLP~-~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
...++++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|+|+++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345789999999998 9999999999999999999987 489999999999999999999999999999999999875
Q ss_pred C
Q 003400 267 K 267 (823)
Q Consensus 267 k 267 (823)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 191
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=124.84 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=75.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567899999999999999999999999999999874 456789999999999999999998 999999999999
Q ss_pred cccCCCCCC
Q 003400 262 HFSIPKDNP 270 (823)
Q Consensus 262 ~~a~pk~~~ 270 (823)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999877644
No 192
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=124.87 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999874 355789999999999999999999999999999999999
Q ss_pred cCCC
Q 003400 264 SIPK 267 (823)
Q Consensus 264 a~pk 267 (823)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 193
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=121.29 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
..+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|++|+|.++.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 4567999999999999999999999999999999874 5699999999999999999999999999999999998764
Q ss_pred C
Q 003400 269 N 269 (823)
Q Consensus 269 ~ 269 (823)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 194
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.2e-13 Score=128.03 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999985 3567999999999999999999999999999999999
Q ss_pred cccC
Q 003400 262 HFSI 265 (823)
Q Consensus 262 ~~a~ 265 (823)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 195
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.46 E-value=1.2e-13 Score=129.40 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=73.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
....+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34679999999999999999999999999999987 4556999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 196
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-14 Score=128.10 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 446789999999999999999999999999998874 456799999999999999999999999999999999999
Q ss_pred cCCCC
Q 003400 264 SIPKD 268 (823)
Q Consensus 264 a~pk~ 268 (823)
+.++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 97654
No 197
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=9e-14 Score=124.03 Aligned_cols=80 Identities=24% Similarity=0.597 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~~--~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
..++++|||+|||.++++++|+ ++|++||.|..|.+. ++++|||||+|.+.++|++|++.|+|..+.|++|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578999999999999999999 999999999999853 4678999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003400 263 FSIPKD 268 (823)
Q Consensus 263 ~a~pk~ 268 (823)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997654
No 198
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=125.11 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=71.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 4679999999999999999999999999999876 344689999999999999999999999999999999999986
Q ss_pred Ccc
Q 003400 352 GGA 354 (823)
Q Consensus 352 ~~~ 354 (823)
...
T Consensus 94 ~~~ 96 (114)
T 2do0_A 94 ALP 96 (114)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 199
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=125.06 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhc--CCcccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTA------CKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 260 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~~------~ksrG~AFV~F~~~e~A~~Ai~~Ln--g~~l~gr~L~ 260 (823)
.+.++|||+|||.++++++|+++|++||. |..|.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46799999999999999999999999998 9999853 3789999999999999999999996 5899999999
Q ss_pred ccccCCCCCCC
Q 003400 261 IHFSIPKDNPS 271 (823)
Q Consensus 261 V~~a~pk~~~~ 271 (823)
|.|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 200
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.46 E-value=9.5e-14 Score=127.50 Aligned_cols=79 Identities=24% Similarity=0.494 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
..+.+.++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|+|..+.|++|.|.|+.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 345678999999999999999999999999999999865 89999999999999999999999999999999999976
Q ss_pred CC
Q 003400 267 KD 268 (823)
Q Consensus 267 k~ 268 (823)
+.
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 201
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=124.32 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=72.2
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
....++|||+|||.++++++|+++|++||.|.-++. ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345679999999999999999999999999854443 5668999999999999999999999999999999999999887
Q ss_pred cc
Q 003400 353 GA 354 (823)
Q Consensus 353 ~~ 354 (823)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 202
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.46 E-value=4.8e-14 Score=127.44 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccc-c
Q 003400 190 HPSRTLFVRNINS------NVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-R 257 (823)
Q Consensus 190 ~~srtLfV~NLP~------~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g-r 257 (823)
..+++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999984 37789999999999999999999999999999 9
Q ss_pred cccccccCCC
Q 003400 258 KLDIHFSIPK 267 (823)
Q Consensus 258 ~L~V~~a~pk 267 (823)
+|+|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998653
No 203
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=123.86 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEeC--CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr----~lFs~fG~I~~v~~~--~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
+.++|||+|||.++++++|+ ++|++||+|.+|++. ...+|||||+|.+.++|++|++.|+|..+.|++|+|.++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 56899999999999999999 999999999999863 223899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003400 265 IPKDNP 270 (823)
Q Consensus 265 ~pk~~~ 270 (823)
.+...+
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 204
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=126.16 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
.+...++|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|++ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34456899999999999999999999999999999873 45789999999999999999999998 8999999999
Q ss_pred ecCCCc
Q 003400 348 PSRPGG 353 (823)
Q Consensus 348 ~s~~~~ 353 (823)
+++++.
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 998754
No 205
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.3e-13 Score=123.06 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
....+|||+|||.++++++|+++|++|| |..|++ ++.++|||||+|.+.++|++|+ .|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3567999999999999999999999997 999876 3567899999999999999999 89999999999999999
Q ss_pred CCCccc
Q 003400 350 RPGGAR 355 (823)
Q Consensus 350 ~~~~~r 355 (823)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 886543
No 206
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2e-13 Score=123.55 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3455789999999999999999999999997 999874 4678999999999999999999 89999999999999
Q ss_pred cccCCCCCC
Q 003400 262 HFSIPKDNP 270 (823)
Q Consensus 262 ~~a~pk~~~ 270 (823)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 207
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=126.85 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=73.1
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceE--------EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~--------~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (823)
....++|||+|||.++++++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999998 4665 3567899999999999999999999999999
Q ss_pred CceEEEEecCCCcc
Q 003400 341 GKRIKLEPSRPGGA 354 (823)
Q Consensus 341 Gr~I~V~~s~~~~~ 354 (823)
|+.|+|++++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999988754
No 208
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=123.41 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--------v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l 254 (823)
...+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999988 763 457799999999999999999999999999
Q ss_pred cccccccccc
Q 003400 255 RRRKLDIHFS 264 (823)
Q Consensus 255 ~gr~L~V~~a 264 (823)
.|++|+|+++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999987
No 209
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4e-14 Score=130.48 Aligned_cols=78 Identities=21% Similarity=0.422 Sum_probs=71.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|+.||.|..|++. +.++|||||+|.+.++|++|+ .|||..|.|+.|+|+++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345799999999999999999999999999999874 567899999999999999999 99999999999999999
Q ss_pred CCCc
Q 003400 350 RPGG 353 (823)
Q Consensus 350 ~~~~ 353 (823)
+++.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 210
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=127.76 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=71.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
..++|||+|||.++++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..+.|+.|+|+|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 45799999999999999999999999999999986 47899999999999999999999999999999999998764
No 211
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.46 E-value=1.5e-13 Score=120.54 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|+ .|||..+.|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999975 4567899999999999999999 899999999999999997
Q ss_pred CC
Q 003400 351 PG 352 (823)
Q Consensus 351 ~~ 352 (823)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 212
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=6.6e-14 Score=129.11 Aligned_cols=77 Identities=13% Similarity=0.284 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
+++.++|||+|||.++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|++.|+|..+.|++|+|.|+..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3456899999999999999999999999999999764 5889999999999999999999999999999999999864
No 213
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=5.1e-14 Score=127.29 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=71.2
Q ss_pred ccceeeecCCC------CCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCC-ceE
Q 003400 277 QGTLVVFNLDP------SVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRI 344 (823)
Q Consensus 277 ~~tLfV~NLp~------~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G-r~I 344 (823)
.++|||+|||. ++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 9999999999999999999986 36789999999999999999999999999999 999
Q ss_pred EEEecCCC
Q 003400 345 KLEPSRPG 352 (823)
Q Consensus 345 ~V~~s~~~ 352 (823)
+|.++++.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 214
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=5.8e-14 Score=126.48 Aligned_cols=76 Identities=28% Similarity=0.408 Sum_probs=71.6
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
++|||+|||.++|+++|+++|++||.|..|++...++|||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 3799999999999999999999999999998865578999999999999999999999999999999999998865
No 215
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9.1e-14 Score=127.60 Aligned_cols=81 Identities=22% Similarity=0.398 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 187 ~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~---~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
....+.++|||+|||.++++++|+++|++||+|..|++. ..++|||||+|.+.++|++|++.|+|..+.|++|+|.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345578999999999999999999999999999998852 44789999999999999999999999999999999999
Q ss_pred cCCC
Q 003400 264 SIPK 267 (823)
Q Consensus 264 a~pk 267 (823)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 216
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=130.50 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4557799999999999999999999999999999984 35679999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003400 263 FSIPKDNP 270 (823)
Q Consensus 263 ~a~pk~~~ 270 (823)
++.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 217
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=126.53 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEE--------EEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIR--------TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~--------~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l 254 (823)
.+.+.++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 4663 356789999999999999999999999999
Q ss_pred ccccccccccCCCCC
Q 003400 255 RRRKLDIHFSIPKDN 269 (823)
Q Consensus 255 ~gr~L~V~~a~pk~~ 269 (823)
.|++|+|.++.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 218
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=122.88 Aligned_cols=83 Identities=23% Similarity=0.407 Sum_probs=73.6
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEE--eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 273 ~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir--i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
.....++|||+|||.++++++|+++|+.|+.|.-++ .++.++|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 344668999999999999999999999998776665 356778999999999999999999999999999999999999
Q ss_pred CCccc
Q 003400 351 PGGAR 355 (823)
Q Consensus 351 ~~~~r 355 (823)
++..+
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87643
No 219
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.6e-14 Score=125.78 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=73.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4579999999999999999999999999999876 35568999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003400 351 PGGARR 356 (823)
Q Consensus 351 ~~~~r~ 356 (823)
+...+.
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 876543
No 220
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=2.1e-13 Score=132.78 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=73.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++|+++|+++|++||.|..|++ ++.+++||||+|.+.++|++||+.|||..|.|+.|+|++++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999987 45678999999999999999999999999999999999998
Q ss_pred CCccc
Q 003400 351 PGGAR 355 (823)
Q Consensus 351 ~~~~r 355 (823)
+...+
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 76543
No 221
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-13 Score=123.87 Aligned_cols=77 Identities=29% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCccceeeecCCC-CCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 275 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 275 ~~~~tLfV~NLp~-~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
...++|||+|||. ++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567999999998 99999999999999999999983 8999999999999999999999999999999999998764
Q ss_pred c
Q 003400 354 A 354 (823)
Q Consensus 354 ~ 354 (823)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 222
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=125.67 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=74.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCE----EEEE-eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I----~~v~-~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...++++|||+|||.++|+++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..+.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34577999999999999999999999999998 4444 478899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003400 263 FSIPKDNP 270 (823)
Q Consensus 263 ~a~pk~~~ 270 (823)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876543
No 223
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=121.51 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcC--CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~f--G~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
..+.++|||+|||.++++++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|++..|.|++|+|.|+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3567999999999999999999999999 99999875 478999999999999999999999999999999999987
Q ss_pred CCC
Q 003400 267 KDN 269 (823)
Q Consensus 267 k~~ 269 (823)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 224
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=130.99 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--EEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCC----cc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--LYT-----ACKHRGFVMISYYDIRAARTAMRALQNK----PL 254 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~----~l 254 (823)
+..+.+.++|||+|||.++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|++.|++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 345567899999999999999999999999999966 663 677899999999999 999999999999 99
Q ss_pred ccccccccccCCCCC
Q 003400 255 RRRKLDIHFSIPKDN 269 (823)
Q Consensus 255 ~gr~L~V~~a~pk~~ 269 (823)
.|++|+|.++.++..
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999987654
No 225
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.45 E-value=6.8e-14 Score=133.65 Aligned_cols=85 Identities=28% Similarity=0.479 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
+....+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334556799999999999999999999999999999984 467899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 003400 261 IHFSIPKDNP 270 (823)
Q Consensus 261 V~~a~pk~~~ 270 (823)
|.|+.++..+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 226
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=123.39 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir-----i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...++|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3457899999999999999999999999986543 24567899999999999999999999999999999999998
Q ss_pred CCC
Q 003400 350 RPG 352 (823)
Q Consensus 350 ~~~ 352 (823)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 227
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=1.9e-13 Score=124.30 Aligned_cols=78 Identities=22% Similarity=0.429 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|++
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4457899999999999999999999999999999874 456899999999999999999999999999999999998
Q ss_pred cC
Q 003400 264 SI 265 (823)
Q Consensus 264 a~ 265 (823)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 228
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=124.73 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=70.6
Q ss_pred CccceeeecCCCCC------CHHHHHHHhcccCceEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEE
Q 003400 276 NQGTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIK 345 (823)
Q Consensus 276 ~~~tLfV~NLp~~v------teedL~~~Fs~fG~I~~iri~---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr-~I~ 345 (823)
..++|||+|||..+ ++++|+++|++||.|..|++. +.++|||||+|.+.++|.+|++.|||..+.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 45799999999999 789999999999999999864 56789999999999999999999999999998 999
Q ss_pred EEecCCC
Q 003400 346 LEPSRPG 352 (823)
Q Consensus 346 V~~s~~~ 352 (823)
|+++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9998754
No 229
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.9e-14 Score=123.35 Aligned_cols=80 Identities=20% Similarity=0.350 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC-CccccccccccccCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIP 266 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~-I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng-~~l~gr~L~V~~a~p 266 (823)
..+.++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.|++ ..+.|++|+|.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 346799999999999999999999999999 665544 4689999999999999999999999 999999999999987
Q ss_pred CCCC
Q 003400 267 KDNP 270 (823)
Q Consensus 267 k~~~ 270 (823)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6543
No 230
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=9.1e-14 Score=125.41 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=69.1
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri------~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
...++|||+|||.++++++|+++|+.|| |.+|++ +++++|||||+|.+.++|++|+ .|||..|.|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3567999999999999999999999999 999986 3456899999999999999999 8999999999999999
Q ss_pred cCCCc
Q 003400 349 SRPGG 353 (823)
Q Consensus 349 s~~~~ 353 (823)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 231
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=124.81 Aligned_cols=79 Identities=18% Similarity=0.387 Sum_probs=69.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~------~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 999984 4567999999999999999999 89999999999999
Q ss_pred cccCCCC
Q 003400 262 HFSIPKD 268 (823)
Q Consensus 262 ~~a~pk~ 268 (823)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 232
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1.1e-13 Score=123.39 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=72.9
Q ss_pred CccceeeecCCCCCCHHHHH----HHhcccCceEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~----~~Fs~fG~I~~iri~--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
..++|||+|||.++++++|+ ++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999 999999999999874 356899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003400 350 RPGGA 354 (823)
Q Consensus 350 ~~~~~ 354 (823)
+++..
T Consensus 87 ~~~~~ 91 (97)
T 1nu4_A 87 KTDSD 91 (97)
T ss_dssp SSCCT
T ss_pred cCCCc
Confidence 98754
No 233
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=126.27 Aligned_cols=80 Identities=29% Similarity=0.373 Sum_probs=72.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCce----EEEE-eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIR-ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I----~~ir-i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++|+++|+++|++||.| ..++ .++.++|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45799999999999999999999999998 4554 367789999999999999999999999999999999999998
Q ss_pred CCccc
Q 003400 351 PGGAR 355 (823)
Q Consensus 351 ~~~~r 355 (823)
++..+
T Consensus 104 ~~~~~ 108 (115)
T 2cpx_A 104 NKKQR 108 (115)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87643
No 234
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.44 E-value=2.5e-13 Score=131.36 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
...+.++|||+|||.++|+++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 34567999999999999999999999999999999987778999999999999999999999999999999999999765
Q ss_pred C
Q 003400 268 D 268 (823)
Q Consensus 268 ~ 268 (823)
.
T Consensus 149 ~ 149 (150)
T 2i2y_A 149 K 149 (150)
T ss_dssp C
T ss_pred C
Confidence 3
No 235
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=8.3e-14 Score=123.55 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=70.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCc-eEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC-CccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR-SDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~-I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG-~~i~Gr~I~V~~s~~~~ 353 (823)
..++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..+.|++|+|++++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4579999999999999999999999999 666655 3689999999999999999999999 99999999999998875
Q ss_pred cc
Q 003400 354 AR 355 (823)
Q Consensus 354 ~r 355 (823)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 236
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=3.9e-14 Score=132.42 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=70.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|+ .|||..|.|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999876 4667999999999999999999 799999999999999998
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 237
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=123.44 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=71.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceE-EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce----EE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR----IK 345 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~-~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~----I~ 345 (823)
..++|||+|||.++++++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457999999999999999999999999999 8875 4567899999999999999999999999999999 99
Q ss_pred EEecCCCc
Q 003400 346 LEPSRPGG 353 (823)
Q Consensus 346 V~~s~~~~ 353 (823)
|+++++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998764
No 238
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=2.6e-13 Score=123.39 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=69.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
...+|||+|||..+++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4679999999999999999999999999999876 35678999999999999999999999999999999999985
No 239
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=118.25 Aligned_cols=71 Identities=15% Similarity=0.362 Sum_probs=65.5
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCccccc-cccc
Q 003400 192 SRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 261 (823)
Q Consensus 192 srtLfV~NLP~~v------teeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr-~L~V 261 (823)
+++|||+|||..+ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 78999999999999999985 457899999999999999999999999999999 8887
Q ss_pred c
Q 003400 262 H 262 (823)
Q Consensus 262 ~ 262 (823)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 240
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.2e-13 Score=120.13 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=70.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
..++|||+|| ++++++|+++|++||.|..|++ +.++|||||+|.+.++|++|++.|||..|.|++|+|++++++..
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 4579999996 8999999999999999999998 46789999999999999999999999999999999999988653
No 241
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=128.07 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=70.2
Q ss_pred CccceeeecCCCC-CCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCC
Q 003400 276 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPG 352 (823)
Q Consensus 276 ~~~tLfV~NLp~~-vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG--~~i~Gr~I~V~~s~~~ 352 (823)
..++|||+|||++ +++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|++ ..|.|++|+|.+++.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 4679999999998 9999999999999999999985 5689999999999999999998864 5699999999999875
Q ss_pred c
Q 003400 353 G 353 (823)
Q Consensus 353 ~ 353 (823)
.
T Consensus 103 ~ 103 (112)
T 1x4f_A 103 K 103 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 242
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=2.4e-13 Score=124.86 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=70.7
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|+.||.|.+|++. +.++|||||+|.+.++|++|++.+ +..+.|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3456799999999999999999999999999999873 567899999999999999999986 5999999999999
Q ss_pred cCCCccc
Q 003400 349 SRPGGAR 355 (823)
Q Consensus 349 s~~~~~r 355 (823)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 243
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=2.4e-13 Score=124.62 Aligned_cols=77 Identities=25% Similarity=0.508 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 189 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 189 e~~srtLfV~NLP~~-vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
....++|||+|||.+ +++++|+++|++||+|..|.+ ++|||||+|.+.++|++|++.|++..+.|++|+|.++.+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 345689999999999 999999999999999999987 7899999999999999999999999999999999999754
Q ss_pred C
Q 003400 268 D 268 (823)
Q Consensus 268 ~ 268 (823)
.
T Consensus 101 ~ 101 (110)
T 1wf1_A 101 K 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 244
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=123.03 Aligned_cols=83 Identities=20% Similarity=0.436 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~--~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
...+.++|||+|||.++++++|+++|+.|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|+.|+|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345789999999999999999999999998877765 356789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003400 266 PKDNP 270 (823)
Q Consensus 266 pk~~~ 270 (823)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 245
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=123.90 Aligned_cols=80 Identities=33% Similarity=0.473 Sum_probs=72.8
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++. ++..|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345679999999999999999999999999999876 355689999999999999999998 99999999999999
Q ss_pred cCCCcc
Q 003400 349 SRPGGA 354 (823)
Q Consensus 349 s~~~~~ 354 (823)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 988754
No 246
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.43 E-value=6e-13 Score=124.54 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=72.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34579999999999999999999999999999976 34578999999999999999999999999999999999998
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 753
No 247
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.43 E-value=1e-13 Score=128.35 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEe-CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG-~I~~v~~-~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
...++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|+|..+.|++|+|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3468999999999999999999999999 8999986 467899999999999999999999999999999999999864
No 248
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.43 E-value=2.1e-13 Score=119.60 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999874 5667999999999999999999 899999999999999987
Q ss_pred CC
Q 003400 266 PK 267 (823)
Q Consensus 266 pk 267 (823)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 249
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=2.1e-13 Score=134.24 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=70.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCc
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 353 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~s~~~~ 353 (823)
..+|||+||++.+|+++|+++|++||+|++|++. ..+++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3579999999999999999999999999999874 4457899999999999999999999999965 999999999874
No 250
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.43 E-value=3.5e-13 Score=131.25 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356799999999999999999999999999999985 466889999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 251
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.3e-13 Score=124.11 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=70.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456799999999999999999999999999999763 5679999999999999999999 9999999999999987
Q ss_pred CC
Q 003400 350 RP 351 (823)
Q Consensus 350 ~~ 351 (823)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 252
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.9e-13 Score=119.18 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
...+.++|||+|| ++++++|+++|++||+|..|.+ .+++|||||+|.+.++|++|++.|++..+.|++|+|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3457799999996 8999999999999999999987 578999999999999999999999999999999999999876
Q ss_pred CC
Q 003400 268 DN 269 (823)
Q Consensus 268 ~~ 269 (823)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 253
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=1.4e-13 Score=117.04 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.3
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ |||..+.|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999976 45678999999999999999998 9999999999999875
No 254
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6e-13 Score=122.47 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcc--------c
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------R 255 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l--------~ 255 (823)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999884 456789999999999999999999999999 4
Q ss_pred cccccccccCCC
Q 003400 256 RRKLDIHFSIPK 267 (823)
Q Consensus 256 gr~L~V~~a~pk 267 (823)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 677888888653
No 255
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=123.31 Aligned_cols=80 Identities=14% Similarity=0.296 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEeCCHHHHHHHHHHhcCCccccc-
Q 003400 188 GEHPSRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 257 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~v------teeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr- 257 (823)
.....++|||+|||..+ ++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 78999999999999999985 457889999999999999999999999999998
Q ss_pred cccccccCCC
Q 003400 258 KLDIHFSIPK 267 (823)
Q Consensus 258 ~L~V~~a~pk 267 (823)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998643
No 256
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=123.44 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=72.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCc-eEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKL 346 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~-I~~iri~------~~srG~aFVeF~d~e~A~kAl~~Ln--G~~i~Gr~I~V 346 (823)
..++|||+|||.++++++|+++|++||. |..|++. +.++|||||+|.+.++|++|++.|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999874 3678999999999999999999996 58999999999
Q ss_pred EecCCCcc
Q 003400 347 EPSRPGGA 354 (823)
Q Consensus 347 ~~s~~~~~ 354 (823)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99988654
No 257
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=1.2e-13 Score=122.79 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=67.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
...+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3479999999999999999999999999875543 45678999999999999999999999999999999999986
Q ss_pred C
Q 003400 351 P 351 (823)
Q Consensus 351 ~ 351 (823)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 258
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.42 E-value=3.7e-13 Score=117.75 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=67.8
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ +++..+.|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999976 36678999999999999999996 588899999999987
Q ss_pred c
Q 003400 349 S 349 (823)
Q Consensus 349 s 349 (823)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 259
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=134.43 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=71.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccC--ceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG--~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
...+|||+|||+++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++||+.|||..|.|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346999999999999999999999999 9999976 567899999999999999999999999999999999999
Q ss_pred cCCCc
Q 003400 349 SRPGG 353 (823)
Q Consensus 349 s~~~~ 353 (823)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 260
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.5e-13 Score=122.71 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=70.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCcc--------CCc
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI--------AGK 342 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i--------~Gr 342 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 35679999999999999999999999999999976 355789999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 003400 343 RIKLEPSRPG 352 (823)
Q Consensus 343 ~I~V~~s~~~ 352 (823)
+|+|+|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999865
No 261
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.42 E-value=2.9e-13 Score=118.44 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=68.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ +++..+.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4457899999999999999999999999999999984 46789999999999999999997 58888999999998
Q ss_pred cc
Q 003400 263 FS 264 (823)
Q Consensus 263 ~a 264 (823)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 262
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-13 Score=130.72 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=71.6
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEE--EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCC----ccCCc
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGK 342 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~--iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~----~i~Gr 342 (823)
....++|||+|||+++|+++|+++|++||.|.. |++ ++.++|||||+|.+. +|.+|++.|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 654 567899999999999 999999999999 99999
Q ss_pred eEEEEecCCCc
Q 003400 343 RIKLEPSRPGG 353 (823)
Q Consensus 343 ~I~V~~s~~~~ 353 (823)
.|+|+++++..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 263
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.1e-13 Score=124.32 Aligned_cols=77 Identities=12% Similarity=0.314 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
+.+.++|||+|||.++|+++|+++|++||+|.+|.+ .++++|||||+|.+.++|++|+. +++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345799999999999999999999999999999984 26789999999999999999999 8999999999999986
Q ss_pred CC
Q 003400 265 IP 266 (823)
Q Consensus 265 ~p 266 (823)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 264
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.4e-13 Score=123.09 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=70.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
.....++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999986433 256689999999999999999999999999999999999
Q ss_pred ccCC
Q 003400 263 FSIP 266 (823)
Q Consensus 263 ~a~p 266 (823)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 265
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.8e-13 Score=126.53 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=71.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++||+. ++..|.|+.|+|++++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4579999999999999999999999999999976 345689999999999999999997 9999999999999998
Q ss_pred CCcc
Q 003400 351 PGGA 354 (823)
Q Consensus 351 ~~~~ 354 (823)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8754
No 266
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.3e-14 Score=121.03 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=69.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
..++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3569999999999999999999999999999976 35568999999999999999999999999999999888765
Q ss_pred C
Q 003400 351 P 351 (823)
Q Consensus 351 ~ 351 (823)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 267
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=133.64 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...++|||+|||.++|+++|+++|++|| .|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999884 57889999999999999999999999999999999999
Q ss_pred ccCCC
Q 003400 263 FSIPK 267 (823)
Q Consensus 263 ~a~pk 267 (823)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98653
No 268
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.41 E-value=1.2e-13 Score=122.86 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34569999999999999999999999999986543 2457889999999999999999999999999999999998
Q ss_pred cC
Q 003400 264 SI 265 (823)
Q Consensus 264 a~ 265 (823)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 269
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.41 E-value=4.4e-13 Score=127.31 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhcCCcccc--ccccccccCCCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDN 269 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~-AFV~F~~~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk~~ 269 (823)
-.|||+||+..+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.+ ++|+|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 467799999999999999999999999999876677888 9999999999999999999999988 8999999987654
No 270
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=118.96 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=63.8
Q ss_pred cceeeecCCCCC------CHHHHHHHhcccCceEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEE
Q 003400 278 GTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKL 346 (823)
Q Consensus 278 ~tLfV~NLp~~v------teedL~~~Fs~fG~I~~iri~---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr-~I~V 346 (823)
++|||+|||..+ ++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 679999999999999999763 46789999999999999999999999999999 8876
No 271
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=5.1e-13 Score=125.02 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999999885 456889999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 976543
No 272
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=7.6e-13 Score=117.90 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=70.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEE-eC-CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-ET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~ir-i~-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
..++|||+|||.++++++|+++|++||.|..|+ +. ....+.|||+|.+.++|++|++.|||..+.|++|+|+++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457999999999999999999999999999995 43 3345669999999999999999999999999999999998874
No 273
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.5e-13 Score=119.53 Aligned_cols=75 Identities=13% Similarity=0.304 Sum_probs=70.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
...+|||+|||.++++++|+++|++| .|.++++. .++|||||+|.+.++|++|++.|||..+.|++|+|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35689999999999999999999999 99999885 78999999999999999999999999999999999998664
No 274
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.6e-13 Score=119.56 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 4457799999999999999999999999999999874 46789999999999999999999 4778999999999
Q ss_pred ccCCCCCC
Q 003400 263 FSIPKDNP 270 (823)
Q Consensus 263 ~a~pk~~~ 270 (823)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876543
No 275
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=5.1e-13 Score=126.01 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=67.9
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCc
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 353 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~-aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~s~~~~ 353 (823)
.|||+||++.+++++|+++|++||.|.+|++..+ .|+ |||+|.+.++|.+|++.|||..|.| +.|+|++++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4789999999999999999999999999988544 486 9999999999999999999999988 699999999875
No 276
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.4e-13 Score=125.05 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHhhcCCCEEEEEeC--------CCcccEEEEEeCCHHHHHHHHHHhcCCccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr---~lFs~fG~I~~v~~~--------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr 257 (823)
....++|||+|||.++++++|+ ++|++||+|..|++. .+++|||||+|.+.++|++|++.|++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3467899999999999999999 999999999999852 24569999999999999999999999999999
Q ss_pred cccccccCCCC
Q 003400 258 KLDIHFSIPKD 268 (823)
Q Consensus 258 ~L~V~~a~pk~ 268 (823)
+|+|.|+.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998764
No 277
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=1.8e-13 Score=120.46 Aligned_cols=75 Identities=16% Similarity=0.374 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
+..++|||+|||.++++++|+++|++| +|..|++. +++|||||+|.+.++|++|++.|+|..+.|++|+|.++..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 467899999999999999999999999 99998874 7899999999999999999999999999999999999854
No 278
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=1.1e-13 Score=122.00 Aligned_cols=75 Identities=21% Similarity=0.439 Sum_probs=67.2
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.+ |++|++.|||..+.|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999863 567899999999999 99999999999999999999999875
Q ss_pred c
Q 003400 353 G 353 (823)
Q Consensus 353 ~ 353 (823)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 279
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.8e-13 Score=117.59 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=70.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
....+|||+|||.++++++|+++|+.| .|..|++ ++.++|||||+|.+.++|++|++ |||..|.|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 346799999999999999999999999 8988876 45678999999999999999999 99999999999999998
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 280
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=1.1e-13 Score=121.94 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=67.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.+ |++|++.|+|..+.|++|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999985 3677999999999999 99999999999999999999999765
Q ss_pred CC
Q 003400 268 DN 269 (823)
Q Consensus 268 ~~ 269 (823)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 281
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=3.8e-13 Score=123.52 Aligned_cols=81 Identities=16% Similarity=0.401 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456799999999999999999999999999999985 3677999999999999999999976 588999999999
Q ss_pred ccCCCCC
Q 003400 263 FSIPKDN 269 (823)
Q Consensus 263 ~a~pk~~ 269 (823)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987653
No 282
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.40 E-value=2.2e-13 Score=115.76 Aligned_cols=70 Identities=16% Similarity=0.401 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
+|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999874 46678999999999999999998 9999999999999875
No 283
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=8.5e-13 Score=125.41 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=69.4
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999986 345789999999999999999999999999999999998
Q ss_pred c
Q 003400 349 S 349 (823)
Q Consensus 349 s 349 (823)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 284
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.2e-13 Score=117.88 Aligned_cols=78 Identities=9% Similarity=0.215 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
....++|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567999999999999999999999999 8988874 46679999999999999999999 9999999999999999
Q ss_pred CCCC
Q 003400 265 IPKD 268 (823)
Q Consensus 265 ~pk~ 268 (823)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 285
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.5e-13 Score=124.45 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=70.3
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-----cccccc
Q 003400 188 GEHPSRTLFV--RNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLD 260 (823)
Q Consensus 188 ~e~~srtLfV--~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l-----~gr~L~ 260 (823)
...++++||| +||+.++++++|+++|++||+|..|.+. ..+|||||+|.+.++|++|++.|+|..+ .+++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3457899999 6699999999999999999999999764 4689999999999999999999999988 689999
Q ss_pred ccccCC
Q 003400 261 IHFSIP 266 (823)
Q Consensus 261 V~~a~p 266 (823)
|.|+..
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 999863
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=6.8e-13 Score=126.07 Aligned_cols=77 Identities=26% Similarity=0.490 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4457899999999999999999999999999999985 35689999999999999999999999999999999998
Q ss_pred cc
Q 003400 263 FS 264 (823)
Q Consensus 263 ~a 264 (823)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 287
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-12 Score=118.31 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=70.8
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 274 ~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
....++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ ++..|.|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 345679999999999999999999999999999976 35678999999999999999999 57899999999999
Q ss_pred cCCCcc
Q 003400 349 SRPGGA 354 (823)
Q Consensus 349 s~~~~~ 354 (823)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988653
No 288
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=1.9e-13 Score=123.08 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=70.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEE----EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i----ri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
...+|||+|||.++++++|+++|++||.|..+ +.++.++|||||+|.+.++|++|++ |||..|.|+.|+|+++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 46799999999999999999999999987652 2346789999999999999999999 999999999999999988
Q ss_pred Cccc
Q 003400 352 GGAR 355 (823)
Q Consensus 352 ~~~r 355 (823)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 289
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.3e-13 Score=126.98 Aligned_cols=77 Identities=17% Similarity=0.381 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC-----CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~-----~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
...++|||+|||.++++++|+++|++||.|..|++. ++++|||||+|.+.++|++|+ .|++..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 456899999999999999999999999999999853 678999999999999999999 89999999999999998
Q ss_pred CCC
Q 003400 265 IPK 267 (823)
Q Consensus 265 ~pk 267 (823)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 290
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.5e-13 Score=119.98 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE-EEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~-v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++|+++|+++|++||.|.. |.+ +++++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 346789999999999999999999999999987 653 577899999999999999999997 99999999999998
Q ss_pred cCCCC
Q 003400 264 SIPKD 268 (823)
Q Consensus 264 a~pk~ 268 (823)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 291
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=9.6e-13 Score=117.23 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-e-CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-T-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~-~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk 267 (823)
...++|||+|||.++++++|+++|++||.|..|+ + ..+..+.|||+|.+.++|++|++.|+|..+.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4578999999999999999999999999999994 3 4445566999999999999999999999999999999999876
Q ss_pred C
Q 003400 268 D 268 (823)
Q Consensus 268 ~ 268 (823)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 292
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.8e-12 Score=115.36 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
...++|||+|||.++++++|+++|++||.|..|........||||+|.+.++|++|++ |++..|.|+.|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999985433222299999999999999999 999999999999999876544
No 293
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=3e-13 Score=121.82 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..+.|+.|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34678999999999999999999999999775521 356789999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 003400 265 IPKDN 269 (823)
Q Consensus 265 ~pk~~ 269 (823)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87553
No 294
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.3e-12 Score=118.82 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=70.4
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEE-EEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~-iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
....+|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+.++|++||+. ++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34579999999999999999999999999987 765 567899999999999999999997 999999999999998
Q ss_pred CCCc
Q 003400 350 RPGG 353 (823)
Q Consensus 350 ~~~~ 353 (823)
.+..
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7643
No 295
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=2.7e-13 Score=115.58 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=66.0
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
++|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999876 35568999999999999999999999 9999999999986
No 296
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=1.2e-12 Score=128.90 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeC-CCcccEEEEEeCCHHHHHHHHHHhcCCcccc--ccccccccCCCC
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKD 268 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~-~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g--r~L~V~~a~pk~ 268 (823)
..+|||+||+..+|+++|+++|++||+|++|++. .+.+|||||+|.+.++|++|++.|+|..|.+ ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4578999999999999999999999999999864 4467899999999999999999999999965 999999998875
Q ss_pred CC
Q 003400 269 NP 270 (823)
Q Consensus 269 ~~ 270 (823)
..
T Consensus 126 l~ 127 (164)
T 1sjr_A 126 LN 127 (164)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 297
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=117.25 Aligned_cols=75 Identities=17% Similarity=0.344 Sum_probs=66.9
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHHhhcC-CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 190 HPSRT-LFVRNINSNVEDSE----LRALFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 190 ~~srt-LfV~NLP~~vteee----Lr~lFs~f-G~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
.|+.| |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.|++|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 35666 99999999999988 55899999 599998 23 9999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+..+.+
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 987654
No 298
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=116.22 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=63.7
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCc--cCCceEEEEecCCC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPG 352 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~--i~Gr~I~V~~s~~~ 352 (823)
....+|||+|||+++|+++|+++|++||.|.+|++...++|||||+|.+.++|++ |+|.. +.|++|.|.+++++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 3457999999999999999999999999999999987789999999999999983 56664 45999999999886
Q ss_pred cc
Q 003400 353 GA 354 (823)
Q Consensus 353 ~~ 354 (823)
..
T Consensus 85 ~~ 86 (89)
T 3d2w_A 85 HN 86 (89)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 299
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.37 E-value=9.4e-13 Score=122.04 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=66.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCce-----EEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR-----IKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~-----I~V~~s~ 350 (823)
...+|||+|||.++++++|+++|++||.|..|++... |||||+|.+.++|++||+.|||..|.|+. |+|+.+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3568999999999999999999999999999998644 99999999999999999999999999998 7777665
Q ss_pred CC
Q 003400 351 PG 352 (823)
Q Consensus 351 ~~ 352 (823)
+.
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 53
No 300
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.37 E-value=9.3e-13 Score=123.03 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999874 5678999999999999999999 799999999999999987
Q ss_pred CCC
Q 003400 266 PKD 268 (823)
Q Consensus 266 pk~ 268 (823)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 301
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-13 Score=115.88 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999998874 46679999999999999999999998 9999999999886
No 302
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=116.75 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=65.4
Q ss_pred ccceeeecCCCCCCHHH----HHHHhccc-CceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 277 QGTLVVFNLDPSVSNED----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 277 ~~tLfV~NLp~~vteed----L~~~Fs~f-G~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
.++|||.|||.++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|.+|++.|||..+.||+|+|.+++.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 33499999999999988 55899999 599988 33 9999999999999999999999999999999999987
Q ss_pred Ccc
Q 003400 352 GGA 354 (823)
Q Consensus 352 ~~~ 354 (823)
+..
T Consensus 84 ~sd 86 (96)
T 2diu_A 84 NRE 86 (96)
T ss_dssp SCC
T ss_pred Ccc
Confidence 653
No 303
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.37 E-value=1e-12 Score=129.37 Aligned_cols=84 Identities=20% Similarity=0.420 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 186 ~~~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
+....+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334567789999999999999999999999999999884 456789999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 003400 261 IHFSIPKDN 269 (823)
Q Consensus 261 V~~a~pk~~ 269 (823)
|.|+.++..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976553
No 304
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=7.2e-13 Score=122.46 Aligned_cols=80 Identities=19% Similarity=0.437 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999999874 356789999999999999999997 999999999999999
Q ss_pred CCCCCC
Q 003400 265 IPKDNP 270 (823)
Q Consensus 265 ~pk~~~ 270 (823)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 877543
No 305
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1.1e-12 Score=116.07 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcc--ccccccccccCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL--RRRKLDIHFSIP 266 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l--~gr~L~V~~a~p 266 (823)
..+..+|||+|||.++|+++|+++|++||+|.+|++...++|||||+|.+.++|++ +++..+ .|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 45779999999999999999999999999999999877799999999999999984 455554 589999999987
Q ss_pred CC
Q 003400 267 KD 268 (823)
Q Consensus 267 k~ 268 (823)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 306
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1e-12 Score=122.11 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=68.9
Q ss_pred Cccceee--ecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCcc-----CCceEEEEe
Q 003400 276 NQGTLVV--FNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI-----AGKRIKLEP 348 (823)
Q Consensus 276 ~~~tLfV--~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i-----~Gr~I~V~~ 348 (823)
...+||| +||+.++++++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||+++ .|+.|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4568999 66999999999999999999999998853 589999999999999999999999988 689999999
Q ss_pred cCCC
Q 003400 349 SRPG 352 (823)
Q Consensus 349 s~~~ 352 (823)
++.-
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8754
No 307
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=115.85 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=67.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (823)
...+|||+|||.++++++|+++|++||.|.+|........||||+|.+.++|++|+. |||..|.|+.|+|+++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 346999999999999999999999999999985433222299999999999999999 99999999999999887654
No 308
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=125.62 Aligned_cols=81 Identities=19% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE----------EeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----------YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v----------~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~ 258 (823)
..++++|||+|||.++|+++|+++|++||.|..| ..+++++|||||+|.+.++|.+|++.|+|..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3577999999999999999999999999987652 246889999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 003400 259 LDIHFSIPKDN 269 (823)
Q Consensus 259 L~V~~a~pk~~ 269 (823)
|.|.|+.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 309
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=125.40 Aligned_cols=80 Identities=28% Similarity=0.380 Sum_probs=71.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEE--------E--EeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~--------i--ri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
...+|||+|||.++|+++|+++|++||.|.. + ..++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4579999999999999999999999998865 3 24678899999999999999999999999999999999
Q ss_pred EEecCCCccc
Q 003400 346 LEPSRPGGAR 355 (823)
Q Consensus 346 V~~s~~~~~r 355 (823)
|.++++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876543
No 310
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.35 E-value=5.6e-13 Score=127.74 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=69.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCc---eEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~---I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
...+|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++||+ |||..|.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4578999999999999999999999999 777765 35678999999999999999999 999999999999999
Q ss_pred cCCCc
Q 003400 349 SRPGG 353 (823)
Q Consensus 349 s~~~~ 353 (823)
+.++.
T Consensus 122 a~~~e 126 (136)
T 2hgl_A 122 SHRTE 126 (136)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 86543
No 311
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5.8e-13 Score=123.09 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=70.3
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCce-EEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I-~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
....+|||+|||+++|+++|+++|+.||.| ..|++ ++.++|||||+|.+.++|++||+. |+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356799999999999999999999999999 66765 356799999999999999999997 999999999999999
Q ss_pred CCCc
Q 003400 350 RPGG 353 (823)
Q Consensus 350 ~~~~ 353 (823)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 312
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=2.9e-12 Score=120.82 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=69.2
Q ss_pred CCcE--EEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEeCCHHHHHHHHHHhcCCcccc--ccccccccC
Q 003400 191 PSRT--LFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 265 (823)
Q Consensus 191 ~srt--LfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~-AFV~F~~~e~A~~Ai~~Lng~~l~g--r~L~V~~a~ 265 (823)
++++ |||+||+..+|+++|+++|++||+|.+|++..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|.|++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4554 679999999999999999999999999986544 486 9999999999999999999999987 689999998
Q ss_pred CCCC
Q 003400 266 PKDN 269 (823)
Q Consensus 266 pk~~ 269 (823)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 313
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.3e-13 Score=116.75 Aligned_cols=78 Identities=24% Similarity=0.456 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~ 269 (823)
.++++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|+.. ...+.+++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 46799999999999999999999999999999998777899999999999999865432 3445899999999987654
No 314
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.4e-12 Score=118.54 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=67.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
...+|||+|||+++|+++|+++|++||.| +|++ +++++|||||+|.+.++|++||+ +|+..|.|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 45799999999999999999999999955 7765 46678999999999999999995 899999999999999876
Q ss_pred Cc
Q 003400 352 GG 353 (823)
Q Consensus 352 ~~ 353 (823)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 315
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.8e-12 Score=117.78 Aligned_cols=78 Identities=9% Similarity=0.212 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
....++|||+|||.++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++|++ +++..|.++.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4567899999999999999999999999965 6663 56789999999999999999995 7999999999999988
Q ss_pred CCCC
Q 003400 265 IPKD 268 (823)
Q Consensus 265 ~pk~ 268 (823)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 316
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.33 E-value=2e-12 Score=119.89 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...++|||+|||.++++++|+++|++||+|..|.+... |||||+|.+.++|++||+.|++..|.|++|+|.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 45689999999999999999999999999999987544 9999999999999999999999999999955444
No 317
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=9e-13 Score=122.82 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=68.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCc---eEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~---I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
...+|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ |||..|.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4578999999999999999999999998 777765 35678999999999999999999 999999999999999
Q ss_pred cCCC
Q 003400 349 SRPG 352 (823)
Q Consensus 349 s~~~ 352 (823)
+.++
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 318
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.33 E-value=6.1e-13 Score=112.89 Aligned_cols=70 Identities=23% Similarity=0.463 Sum_probs=64.6
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++. ++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999999999999999999999999976 356789999999999999999994 899999999999875
No 319
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.9e-13 Score=122.58 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCE-EEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDI-RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I-~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4567999999999999999999999999999 66664 467899999999999999999996 99999999999999
Q ss_pred cCCC
Q 003400 264 SIPK 267 (823)
Q Consensus 264 a~pk 267 (823)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 320
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=6.4e-13 Score=127.81 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=69.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEe
Q 003400 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (823)
Q Consensus 230 G~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri 309 (823)
|+||.+|.-++.+..++..+... ..+....-...... .........+|||+|||+++|+++|+++|++|| |.+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~--~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSE--FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcc--cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 56778888777777776654332 23322211111111 111223456999999999999999999999999 668876
Q ss_pred ----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 310 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 310 ----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
.++++|||||+|.+.++|++|| .+|+..|.|+.|+|..+.+...
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 3567899999999999999999 7999999999999999887653
No 321
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.5e-13 Score=125.03 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=68.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEE-E----eCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i-r----i~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
...+|||+|||+++|+++|+++|+.||.|..+ . .++.++|||||+|.+.++|++||+ |||..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998652 1 256779999999999999999999 99999999999999997
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-13 Score=127.49 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=71.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~--------iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (823)
..++|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4579999999999999999999999999988 654 356789999999999999999999999999999
Q ss_pred eEEEEecCCCcc
Q 003400 343 RIKLEPSRPGGA 354 (823)
Q Consensus 343 ~I~V~~s~~~~~ 354 (823)
+|+|++++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987653
No 323
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-13 Score=127.48 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~--------v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~ 255 (823)
..+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457799999999999999999999999999988 553 3567899999999999999999999999999
Q ss_pred cccccccccCCCCCC
Q 003400 256 RRKLDIHFSIPKDNP 270 (823)
Q Consensus 256 gr~L~V~~a~pk~~~ 270 (823)
|++|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 324
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=5.7e-13 Score=120.17 Aligned_cols=80 Identities=23% Similarity=0.503 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456799999999999999999999999999999884 45688999999999999999999 88999999999999
Q ss_pred cCCCCC
Q 003400 264 SIPKDN 269 (823)
Q Consensus 264 a~pk~~ 269 (823)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 325
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=1.3e-12 Score=135.97 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=71.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccC--ceEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG--~I~~iri-----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
...+|||+||++++|+++|+++|++|| .|++|++ +++++|||||+|.+.++|++||+.|||..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999976 567899999999999999999999999999999999999
Q ss_pred cCCCc
Q 003400 349 SRPGG 353 (823)
Q Consensus 349 s~~~~ 353 (823)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 326
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.3e-12 Score=117.79 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=67.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
...+|||+|||+++|+++|+++|+.| .|..|++. ++++|||||+|.+.++|++|| .||+..|.|+.|+|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34699999999999999999999999 88888763 567999999999999999999 6999999999999988754
No 327
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.31 E-value=8.3e-13 Score=112.09 Aligned_cols=70 Identities=19% Similarity=0.477 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
+|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++. ++..+.|++|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 6999999999999999999999999999874 367899999999999999999994 899999999999874
No 328
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=119.91 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=70.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCc---eEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~---I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
....+|||+|||+++|+++|+++|+.||. |..|++. +.++|||||+|.+.++|++||+ |||..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999998 8888763 5678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 003400 348 PSRPGG 353 (823)
Q Consensus 348 ~s~~~~ 353 (823)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987643
No 329
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.31 E-value=2.7e-12 Score=111.90 Aligned_cols=72 Identities=18% Similarity=0.387 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~f----G-------~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~ 258 (823)
++.++|||+|||.++++++|+++|++| | .|.++++. +.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 467999999999999999999999999 8 99999764 45899999999999999999 99999999999
Q ss_pred ccccc
Q 003400 259 LDIHF 263 (823)
Q Consensus 259 L~V~~ 263 (823)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99874
No 330
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6.1e-13 Score=124.70 Aligned_cols=77 Identities=9% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE---E--eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL---Y--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v---~--~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||.++|+++|+++|++||.|..+ . .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999998552 2 357789999999999999999999 999999999999999
Q ss_pred cCC
Q 003400 264 SIP 266 (823)
Q Consensus 264 a~p 266 (823)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 331
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=3.3e-12 Score=119.72 Aligned_cols=76 Identities=20% Similarity=0.395 Sum_probs=70.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
..++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..+.|+.|+|++++++..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 4579999996 69999999999999999999885 6789999999999999999999999999999999999988753
No 332
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.3e-12 Score=114.69 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=66.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
..++|||+|||.++++++|+++|++||.|.+|++...++|||||+|.+.++|++|+.. ...+.|++|+|.+++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 3579999999999999999999999999999999777899999999999999764321 3355899999999988754
No 333
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=1.9e-12 Score=134.62 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG--~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..++|||+|||.++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++||+.|++..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999884 677899999999999999999999999999999999999
Q ss_pred cCC
Q 003400 264 SIP 266 (823)
Q Consensus 264 a~p 266 (823)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 853
No 334
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=1.6e-12 Score=121.16 Aligned_cols=76 Identities=7% Similarity=0.115 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~---I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...++|||+|||.++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45789999999999999999999999998 777663 46789999999999999999999 99999999999999
Q ss_pred ccCC
Q 003400 263 FSIP 266 (823)
Q Consensus 263 ~a~p 266 (823)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 335
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=3.8e-12 Score=119.34 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~pk~ 268 (823)
..+.++|||+|| ++++++|+++|++||+|..|.+ .+++|||||+|.+.++|++|++.|++..+.|++|.|.|+.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 356799999996 6999999999999999999976 4789999999999999999999999999999999999998764
Q ss_pred C
Q 003400 269 N 269 (823)
Q Consensus 269 ~ 269 (823)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 336
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.29 E-value=5e-12 Score=110.19 Aligned_cols=71 Identities=21% Similarity=0.383 Sum_probs=65.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhccc----C-------ceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~f----G-------~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (823)
..++|||+|||.++++++|+++|++| | .|.++++. ..+|||||+|.+.++|++|+ .|||..+.|+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45799999999999999999999999 8 89999885 45899999999999999999 999999999999
Q ss_pred EEEe
Q 003400 345 KLEP 348 (823)
Q Consensus 345 ~V~~ 348 (823)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9873
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=6.3e-12 Score=127.31 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHh--cCCccccccccccccCCCCCCCC-----CCCCccceeeecCCCCCCHHHHHHHhcccCceEEEEeC
Q 003400 238 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSD-----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 310 (823)
Q Consensus 238 ~~e~A~~Ai~~L--ng~~l~gr~L~V~~a~pk~~~~~-----~~~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~ 310 (823)
+.+.+..|++.. ....+.+....|........+.. .....++|||+|||.++|+++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 667888888866 34445555555554422221111 12345799999999999999999999999999999763
Q ss_pred ----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 311 ----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 311 ----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
+.++|||||+|.+.++|++|+..+ +..+.|+.|+|.+++.-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 567899999999999999999866 45999999999997653
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=4.1e-12 Score=126.96 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
...+.++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999985 356889999999999999999999999999999999999
Q ss_pred cCCC
Q 003400 264 SIPK 267 (823)
Q Consensus 264 a~pk 267 (823)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8653
No 339
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=118.34 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~---I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....++|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346789999999999999999999999998 777763 36789999999999999999999 9999999999999
Q ss_pred cccCC
Q 003400 262 HFSIP 266 (823)
Q Consensus 262 ~~a~p 266 (823)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98864
No 340
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.28 E-value=1.9e-12 Score=116.75 Aligned_cols=77 Identities=25% Similarity=0.473 Sum_probs=70.0
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (823)
...++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++ +|..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34579999999999999999999999999999976 45578999999999999999999 9999999999999987
Q ss_pred CCc
Q 003400 351 PGG 353 (823)
Q Consensus 351 ~~~ 353 (823)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 341
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.28 E-value=1.7e-12 Score=124.37 Aligned_cols=77 Identities=6% Similarity=0.088 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~---I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 346789999999999999999999999998 666653 46789999999999999999999 9999999999999
Q ss_pred cccCC
Q 003400 262 HFSIP 266 (823)
Q Consensus 262 ~~a~p 266 (823)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98753
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.28 E-value=6.8e-12 Score=125.36 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=72.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
..++|||+|||..+++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..|.|+.|+|+++..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 45799999999999999999999999999999873 55789999999999999999999999999999999999976
Q ss_pred Cc
Q 003400 352 GG 353 (823)
Q Consensus 352 ~~ 353 (823)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=9.6e-12 Score=129.93 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=76.0
Q ss_pred ccccccccccccCCCCCCCCCCCCccceeeecCCCCC---------CHHHHHHHhcccCceEEEEeCCCcccEEEEEEcC
Q 003400 253 PLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV---------SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 323 (823)
Q Consensus 253 ~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v---------teedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d 323 (823)
.+.|+.....+..............++|||+||+..+ ++++|+++|++||.|.+|++. .++|||||+|.+
T Consensus 110 D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~ 188 (240)
T 3u1l_A 110 DCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKY 188 (240)
T ss_dssp CTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESS
T ss_pred ccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCC
Confidence 3445554444433222112223456799999999998 799999999999999999986 468999999999
Q ss_pred HHHHHHHHHHhCCCcc------------CCceEEEEecCCCcc
Q 003400 324 VRAAEAALKSLNRSDI------------AGKRIKLEPSRPGGA 354 (823)
Q Consensus 324 ~e~A~kAl~~LnG~~i------------~Gr~I~V~~s~~~~~ 354 (823)
.++|+.|+++|+|..| .|+.|.|+|++....
T Consensus 189 ~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 189 QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 9999999999999999 899999999987653
No 344
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=8.7e-12 Score=130.24 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcc-----
Q 003400 189 EHPSRTLFVRNINSNV---------EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 254 (823)
Q Consensus 189 e~~srtLfV~NLP~~v---------teeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l----- 254 (823)
....++|||+||+..+ ++++|+++|++||+|.+|++. .++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4578999999999998 799999999999999999864 5799999999999999999999999999
Q ss_pred -------ccccccccccCCCCCC
Q 003400 255 -------RRRKLDIHFSIPKDNP 270 (823)
Q Consensus 255 -------~gr~L~V~~a~pk~~~ 270 (823)
.|+.|.|.|+.+..++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876544
No 345
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=116.53 Aligned_cols=73 Identities=8% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..++|||+|||.++|+++|+++|+.| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 8888874 3678999999999999999999 599999999999998764
No 346
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=3.6e-12 Score=122.56 Aligned_cols=79 Identities=9% Similarity=0.193 Sum_probs=68.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
.....++|||+|||.++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|+ .+++..|.++.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 657774 3678999999999999999999 6899999999999998
Q ss_pred cCCCC
Q 003400 264 SIPKD 268 (823)
Q Consensus 264 a~pk~ 268 (823)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87644
No 347
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.3e-12 Score=120.28 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=66.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCce----EEEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I----~~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
...+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..|.|+.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 34689999999999999999999999975 45544 567899999999999999999996 9999999999999
Q ss_pred ecCCC
Q 003400 348 PSRPG 352 (823)
Q Consensus 348 ~s~~~ 352 (823)
.+.++
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=113.75 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=60.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----C---CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~---~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
..+++|||+|||.++++++|+++|++||+|. +.+ + ++++|||||+|.+.++|++|++.|++ +.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4679999999999999999999999999999 553 1 57899999999999999999998832 55665555
Q ss_pred ccc
Q 003400 262 HFS 264 (823)
Q Consensus 262 ~~a 264 (823)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=1.2e-11 Score=116.92 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEE--EEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR--TLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~--~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
..+.++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3457899999999999999999999999 566 7773 367899999999999999999994 7799999999998
Q ss_pred ccCC
Q 003400 263 FSIP 266 (823)
Q Consensus 263 ~a~p 266 (823)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.21 E-value=3.4e-11 Score=110.18 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=66.7
Q ss_pred CccceeeecCCC-----CCCHHHHHHHhcccCceEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003400 276 NQGTLVVFNLDP-----SVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (823)
Q Consensus 276 ~~~tLfV~NLp~-----~vteedL~~~Fs~fG~I~~iri~------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (823)
..++|+|.||.. +-++++|+++|++||.|.+|++. +.++|+|||+|.+.++|.+|++.|||+.+.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456899999963 23789999999999999999762 3578999999999999999999999999999999
Q ss_pred EEEecCC
Q 003400 345 KLEPSRP 351 (823)
Q Consensus 345 ~V~~s~~ 351 (823)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999865
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=4.1e-11 Score=110.33 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=71.1
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHHhhcCCCEEEEEe-CCCcccEEEEEeCCHHHHHHHHHHhcCCccc
Q 003400 188 GEHPSRTLFVRNINSNVE-----------DSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (823)
Q Consensus 188 ~e~~srtLfV~NLP~~vt-----------eeeLr~lFs~fG~I~~v~~-~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~ 255 (823)
...++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|+|..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 446789999999954432 6899999999999999875 3457999999999999999999999999999
Q ss_pred cccccccccCCCCC
Q 003400 256 RRKLDIHFSIPKDN 269 (823)
Q Consensus 256 gr~L~V~~a~pk~~ 269 (823)
|++|.|.|+.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999977543
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=5.5e-12 Score=118.79 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCE----EEEE----eCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~fG~I----~~v~----~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.+.++|||+|||+++|+++|+++|++||.| ..|+ .+++++|||||+|.+.++|++|++. ++..+.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 3444 2577899999999999999999996 999999999998
Q ss_pred cccC
Q 003400 262 HFSI 265 (823)
Q Consensus 262 ~~a~ 265 (823)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 353
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.21 E-value=9.8e-12 Score=117.59 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=66.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceE--EEEe----CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--EIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~--~iri----~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (823)
...+|||+|||+++|+++|+++|++| .|. +|++ .++++|||||+|.+.++|++||+. ++..|.|+.|+|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 45789999999999999999999999 566 7765 356799999999999999999984 789999999999988
Q ss_pred CCC
Q 003400 350 RPG 352 (823)
Q Consensus 350 ~~~ 352 (823)
.++
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.9e-11 Score=111.65 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=65.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhcccCceEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~--------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (823)
..++|||+|||.++++++|+++|++||.|. +++. +.++|||||+|.+.++|++|++.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 6542 4679999999999999999999984 4788888887
Q ss_pred ecCCCcccc
Q 003400 348 PSRPGGARR 356 (823)
Q Consensus 348 ~s~~~~~r~ 356 (823)
.+.+...+.
T Consensus 84 ~~~~~~~~~ 92 (114)
T 2dnl_A 84 SSPTIKDKP 92 (114)
T ss_dssp CCSSSCSEE
T ss_pred cCCCcCCCe
Confidence 666544433
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.7e-11 Score=109.96 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=68.8
Q ss_pred CCccceeeecCCCCCC-----------HHHHHHHhcccCceEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003400 275 LNQGTLVVFNLDPSVS-----------NEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vt-----------eedL~~~Fs~fG~I~~iri-~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (823)
...++|+|.||....+ +++|+++|++||.|.+|.+ ...++|||||+|.+.++|++|++.|||..+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3567999999954332 5899999999999999976 345789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003400 343 RIKLEPSRPGG 353 (823)
Q Consensus 343 ~I~V~~s~~~~ 353 (823)
+|+|.++.++.
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998754
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.19 E-value=3.3e-11 Score=110.28 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEeCCHHHHHHHHHHhcCCcccccc
Q 003400 190 HPSRTLFVRNINS-----NVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (823)
Q Consensus 190 ~~srtLfV~NLP~-----~vteeeLr~lFs~fG~I~~v~~~------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~ 258 (823)
.++++|+|+|+.. +-++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|+|+.+.|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4789999999963 23789999999999999999842 467999999999999999999999999999999
Q ss_pred ccccccCC
Q 003400 259 LDIHFSIP 266 (823)
Q Consensus 259 L~V~~a~p 266 (823)
|.|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 357
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.18 E-value=2.5e-11 Score=137.77 Aligned_cols=80 Identities=28% Similarity=0.469 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccc
Q 003400 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (823)
Q Consensus 189 e~~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~ 263 (823)
..+.++|||+|||..+|+++|+++|++||.|..|.+ +++++|||||+|.+.++|++||..|+|..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999985 566899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003400 264 SIPKD 268 (823)
Q Consensus 264 a~pk~ 268 (823)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97643
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.9e-11 Score=113.84 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=68.2
Q ss_pred cceeeecC----CCCCCHHHHHHHhcccCceEEEEe-----CCCcccEEEEEEcC----HHH----HHHHHH--HhCCCc
Q 003400 278 GTLVVFNL----DPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALK--SLNRSD 338 (823)
Q Consensus 278 ~tLfV~NL----p~~vteedL~~~Fs~fG~I~~iri-----~~~srG~aFVeF~d----~e~----A~kAl~--~LnG~~ 338 (823)
..|||+|| |+.+++++|+++|+.||+|.+|++ ++.++|||||+|.| +++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999964 77889999999996 333 899998 899999
Q ss_pred cCCceEEEEecCCCcc
Q 003400 339 IAGKRIKLEPSRPGGA 354 (823)
Q Consensus 339 i~Gr~I~V~~s~~~~~ 354 (823)
|.|++|+|.+-+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999888765
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.6e-10 Score=104.87 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003400 286 DPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (823)
Q Consensus 286 p~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (823)
+..+++++|+++|++||.|.+|++.+.++|||||+|.+.++|++|++.+++ +.|++|+|+|++++..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 357899999999999999999999888999999999999999999998554 6799999999987653
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.09 E-value=1.3e-10 Score=117.71 Aligned_cols=75 Identities=12% Similarity=0.318 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
..++|||+|||.++|+++|+++|++||.|..|++ .++++|||||+|.+.++|++|++.+ +..+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999974 3678999999999999999999865 5689999999998753
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.3e-10 Score=100.93 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=64.0
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccccc
Q 003400 192 SRTLFVRNIN-------SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (823)
Q Consensus 192 srtLfV~NLP-------~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a 264 (823)
.++|.|+-.. .++++++|+++|++||+|..|.+.++++|||||+|.+.++|++|++.+++ +.+++|.|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 4566665443 46899999999999999999998888999999999999999999997544 67999999999
Q ss_pred CCCC
Q 003400 265 IPKD 268 (823)
Q Consensus 265 ~pk~ 268 (823)
.++.
T Consensus 88 ~~~~ 91 (100)
T 2d9o_A 88 EGQP 91 (100)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.08 E-value=2.4e-10 Score=104.52 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=65.6
Q ss_pred CccceeeecC--CCCCC--------HHHHHHHhcccCceEEEEeCC-------CcccEEEEEEcCHHHHHHHHHHhCCCc
Q 003400 276 NQGTLVVFNL--DPSVS--------NEDLRQIFGAYGEVKEIRETP-------HKRHHKFIEFYDVRAAEAALKSLNRSD 338 (823)
Q Consensus 276 ~~~tLfV~NL--p~~vt--------eedL~~~Fs~fG~I~~iri~~-------~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (823)
+.+.|.|.|+ +.++. +++|++.|++||.|.+|++.. .++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899998 33443 378999999999999998742 468999999999999999999999999
Q ss_pred cCCceEEEEecCCC
Q 003400 339 IAGKRIKLEPSRPG 352 (823)
Q Consensus 339 i~Gr~I~V~~s~~~ 352 (823)
++||+|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998643
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.06 E-value=2.2e-10 Score=104.74 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=66.7
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHhhcCCCEEEEEeC-------CCcccEEEEEeCCHHHHHHHHHHhcCC
Q 003400 190 HPSRTLFVRNI--NSNVE--------DSELRALFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQNK 252 (823)
Q Consensus 190 ~~srtLfV~NL--P~~vt--------eeeLr~lFs~fG~I~~v~~~-------~ksrG~AFV~F~~~e~A~~Ai~~Lng~ 252 (823)
.|+++|.|+|+ |.++. +++|++.|++||+|.+|++. .+++|+|||+|.+.++|++|++.|+|+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 44443 36899999999999999853 246899999999999999999999999
Q ss_pred ccccccccccccC
Q 003400 253 PLRRRKLDIHFSI 265 (823)
Q Consensus 253 ~l~gr~L~V~~a~ 265 (823)
.+.|++|.|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999874
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.06 E-value=5.9e-11 Score=111.75 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=64.3
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 003400 193 RTLFVRNI----NSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 253 (823)
Q Consensus 193 rtLfV~NL----P~~vteeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~~----~e~----A~~Ai~--~Lng~~ 253 (823)
+.|||+|| |+.+++++|+++|+.||+|.+|. .+++++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999997 378899999999996 433 889988 789999
Q ss_pred ccccccccccc
Q 003400 254 LRRRKLDIHFS 264 (823)
Q Consensus 254 l~gr~L~V~~a 264 (823)
|.|++|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999975
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=3.3e-10 Score=124.27 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=66.1
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccc---cc--ccc
Q 003400 188 GEHPSRTLFVRN--INSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLD 260 (823)
Q Consensus 188 ~e~~srtLfV~N--LP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~---gr--~L~ 260 (823)
...++++|||+| |+..+||++|+++|++||+|.+|.+. .+||||||+|.+.++|++|++.|||..+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 356899999999 57899999999999999999999764 47999999999999999999999999873 33 567
Q ss_pred cccc
Q 003400 261 IHFS 264 (823)
Q Consensus 261 V~~a 264 (823)
|.|+
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7765
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.99 E-value=1.6e-10 Score=105.40 Aligned_cols=68 Identities=28% Similarity=0.401 Sum_probs=58.4
Q ss_pred eecCCCCCCHHHHHHHh------------cccCceEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 282 VFNLDPSVSNEDLRQIF------------GAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 282 V~NLp~~vteedL~~~F------------s~fG~I~~iri~----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
+.||+..+++++|+++| ++||.|.+|++. ++++|||||+|.+.++|++|++.|||+.+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666677777776666 999999999874 34689999999999999999999999999999999
Q ss_pred EEec
Q 003400 346 LEPS 349 (823)
Q Consensus 346 V~~s 349 (823)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=7.3e-10 Score=121.55 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=65.5
Q ss_pred Cccceeeec--CCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccC---Cc--eEEEEe
Q 003400 276 NQGTLVVFN--LDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA---GK--RIKLEP 348 (823)
Q Consensus 276 ~~~tLfV~N--Lp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~---Gr--~I~V~~ 348 (823)
...+|||+| |+..+|+++|+++|++||+|++|++.. +||||||+|.+.++|++|++.|||+++. |+ .|.|.|
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEE
Confidence 456999999 578999999999999999999998854 7899999999999999999999999873 44 678888
Q ss_pred cC
Q 003400 349 SR 350 (823)
Q Consensus 349 s~ 350 (823)
+.
T Consensus 96 ~~ 97 (345)
T 3tht_A 96 VE 97 (345)
T ss_dssp CS
T ss_pred ee
Confidence 75
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=1.7e-09 Score=100.34 Aligned_cols=76 Identities=18% Similarity=0.143 Sum_probs=64.3
Q ss_pred CccceeeecCCCCC----------CHHHHHHHhcccCceEEEEeCCC-cccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003400 276 NQGTLVVFNLDPSV----------SNEDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (823)
Q Consensus 276 ~~~tLfV~NLp~~v----------teedL~~~Fs~fG~I~~iri~~~-srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (823)
..++|.|.|+-..- -++||++.|++||.|.+|++... .+|++||+|.+.++|.+|++.|||+.++|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45678888884322 13688999999999999988543 48999999999999999999999999999999
Q ss_pred EEEecCC
Q 003400 345 KLEPSRP 351 (823)
Q Consensus 345 ~V~~s~~ 351 (823)
+|+++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999854
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.93 E-value=1.3e-09 Score=101.83 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=64.2
Q ss_pred CccceeeecCCC--CC---CHHHHHHHhcccCceEEEEeC---------CCcccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003400 276 NQGTLVVFNLDP--SV---SNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (823)
Q Consensus 276 ~~~tLfV~NLp~--~v---teedL~~~Fs~fG~I~~iri~---------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (823)
..++|+|.|+-. ++ -++||++.|++||.|.+|++. +.++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 346899999832 22 368999999999999999752 2346999999999999999999999999999
Q ss_pred ceEEEEecCC
Q 003400 342 KRIKLEPSRP 351 (823)
Q Consensus 342 r~I~V~~s~~ 351 (823)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.90 E-value=5e-10 Score=102.14 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCEEEEEeC----CCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 197 VRNINSNVEDSELRALF------------EQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 197 V~NLP~~vteeeLr~lF------------s~fG~I~~v~~~----~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
+.+||..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|++|++.|+|+.+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677778888777666 999999999863 45799999999999999999999999999999999
Q ss_pred cccc
Q 003400 261 IHFS 264 (823)
Q Consensus 261 V~~a 264 (823)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.90 E-value=1.9e-09 Score=100.68 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHHhhcCCCEEEEEeC---------CCcccEEEEEeCCHHHHHHHHHHhcCCcccc
Q 003400 191 PSRTLFVRNINS--NV---EDSELRALFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (823)
Q Consensus 191 ~srtLfV~NLP~--~v---teeeLr~lFs~fG~I~~v~~~---------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g 256 (823)
++++|+|+|+-. ++ .++||++.|++||+|.+|++. ++++|+|||+|.+.++|.+|++.|+|+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 789999999842 22 368999999999999998742 2456999999999999999999999999999
Q ss_pred ccccccccC
Q 003400 257 RKLDIHFSI 265 (823)
Q Consensus 257 r~L~V~~a~ 265 (823)
+.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.84 E-value=4.9e-09 Score=97.30 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCCC----------HHHHHHHhhcCCCEEEEEeCCC-cccEEEEEeCCHHHHHHHHHHhcCCcccccc
Q 003400 190 HPSRTLFVRNINSNVE----------DSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (823)
Q Consensus 190 ~~srtLfV~NLP~~vt----------eeeLr~lFs~fG~I~~v~~~~k-srG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~ 258 (823)
.++++|.++|+=..-. ++||++.|++||.|.+|.+... .+|+|||+|.+.++|++|++.|+|+.+.|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4788999999843221 4588999999999999986433 5899999999999999999999999999999
Q ss_pred ccccccC
Q 003400 259 LDIHFSI 265 (823)
Q Consensus 259 L~V~~a~ 265 (823)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999974
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=3.2e-08 Score=87.53 Aligned_cols=75 Identities=25% Similarity=0.406 Sum_probs=63.6
Q ss_pred CCccceeeecCC----CCCCH----HHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003400 275 LNQGTLVVFNLD----PSVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (823)
Q Consensus 275 ~~~~tLfV~NLp----~~vte----edL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V 346 (823)
....||+|.-.+ .+.-+ .+|.+.|.+||+|..+|+.. +.+||+|.+.++|.+||. |||..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 356789998876 23333 67999999999999999864 339999999999999998 9999999999999
Q ss_pred EecCCCc
Q 003400 347 EPSRPGG 353 (823)
Q Consensus 347 ~~s~~~~ 353 (823)
+++++.-
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9998753
No 374
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.61 E-value=9e-08 Score=85.03 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=71.6
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEEE-eeeccccc-ceeEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003400 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLY-LPIDFKNK-CNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 771 (823)
Q Consensus 695 Tt~MirNIPnk~~~~~l~~~id~~~~~~ydf~Y-lp~d~~~~-~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~-s~k~ 771 (823)
|.|.||++|..+|++.++++|+... ++||+| .|-+...+ +--+.|||||.+++++..|.+.|+|+.|...+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 7899999999999999999999764 688885 67776654 44578999999999999999999999998653 4577
Q ss_pred EEEEeeecc
Q 003400 772 ASLAYARIQ 780 (823)
Q Consensus 772 ~~~~~A~iQ 780 (823)
+.|.||--|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999877
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1.8e-07 Score=87.57 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=70.5
Q ss_pred CccceeeecCCCC-CCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcC-HHHHHHHHHHhC--CCccCCceEEEEecCC
Q 003400 276 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALKSLN--RSDIAGKRIKLEPSRP 351 (823)
Q Consensus 276 ~~~tLfV~NLp~~-vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d-~e~A~kAl~~Ln--G~~i~Gr~I~V~~s~~ 351 (823)
....|+|+||+.+ ++.++|+++|++||+|..|.+.... ..|||+|.+ .++|.+|++.|| +..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4568999999999 9999999999999999999986443 379999999 899999999995 7799999999988764
Q ss_pred Ccccchhhhcc
Q 003400 352 GGARRNLMLQL 362 (823)
Q Consensus 352 ~~~r~~~~~ql 362 (823)
..+ +.|...+
T Consensus 96 eeE-~~yw~Ki 105 (121)
T 1owx_A 96 EVE-KEALKKI 105 (121)
T ss_dssp HHH-HHHHHHH
T ss_pred HHH-HHHHHHH
Confidence 433 3344433
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=1.4e-07 Score=83.87 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=61.6
Q ss_pred CCccceeeecCCCC-----CCH----HHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003400 275 LNQGTLVVFNLDPS-----VSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (823)
Q Consensus 275 ~~~~tLfV~NLp~~-----vte----edL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (823)
.+..||+|.-++.+ +-+ .+|.+.|..||+|..+|+.... +||+|.+.++|.+||+ |||.++.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 45679999988643 222 5689999999999999986433 9999999999999998 999999999999
Q ss_pred EEecCC
Q 003400 346 LEPSRP 351 (823)
Q Consensus 346 V~~s~~ 351 (823)
|++..+
T Consensus 89 V~~k~~ 94 (95)
T 1ufw_A 89 ISGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EeccCC
Confidence 988644
No 377
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.42 E-value=8.8e-08 Score=85.65 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=70.0
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eeeecccccce-eEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003400 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFL-YLPIDFKNKCN-VGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 771 (823)
Q Consensus 695 Tt~MirNIPnk~~~~~l~~~id~~~~~~ydf~-Ylp~d~~~~~n-~gyafin~~~~~~~~~f~~~f~g~~w~~~~-s~k~ 771 (823)
-.|.||++|..+|++.+++.|+.... .||+ |.|-|...+-+ -..|||||++++++..|.+.|+|+.|...+ .+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 47999999999999999999997654 4666 57777766433 367999999999999999999999998653 4577
Q ss_pred EEEEeeecc
Q 003400 772 ASLAYARIQ 780 (823)
Q Consensus 772 ~~~~~A~iQ 780 (823)
+.|.||-.|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 889999877
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=6.6e-07 Score=83.66 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=62.0
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCC-HHHHHHHHHHhc--CCccccccccccc
Q 003400 190 HPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHF 263 (823)
Q Consensus 190 ~~srtLfV~NLP~~-vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~-~e~A~~Ai~~Ln--g~~l~gr~L~V~~ 263 (823)
.+.+.|||+||+.+ +++++|+++|++||+|..|.+.. ....|||.|.+ .++|..|+++|+ +..|.+..+.++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~-g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46789999999999 99999999999999999998533 34479999999 899999999984 6777787666654
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=8.1e-07 Score=78.58 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=61.4
Q ss_pred CCCcEEEEcCCC----CCCCH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccc
Q 003400 190 HPSRTLFVRNIN----SNVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (823)
Q Consensus 190 ~~srtLfV~NLP----~~vte----eeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V 261 (823)
.|..||+|.-.+ .++-+ .+|.+.|.+||+|..+++... .+||+|.+.++|.+|++ |+|..+.|+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 356788888776 23434 679999999999999986442 38999999999999999 9999999999999
Q ss_pred cccCCC
Q 003400 262 HFSIPK 267 (823)
Q Consensus 262 ~~a~pk 267 (823)
+++.|.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998753
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.29 E-value=9.3e-07 Score=90.53 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=56.8
Q ss_pred CCHHHHHHHhcccCceEEEEeC---------CCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 289 VSNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 289 vteedL~~~Fs~fG~I~~iri~---------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
-.+++|++.|++||.|.++++. +.++|++||+|.+.++|.+|++.|||+.++||.|+|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4568999999999999999762 26789999999999999999999999999999999999753
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.10 E-value=3.5e-06 Score=86.20 Aligned_cols=62 Identities=11% Similarity=0.129 Sum_probs=56.1
Q ss_pred CCHHHHHHHhhcCCCEEEEEeC---------CCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 204 VEDSELRALFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 204 vteeeLr~lFs~fG~I~~v~~~---------~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
-.+++|++.|++||+|.++.+. ++++|++||+|.+.++|++|++.|+|+.+.||.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999852 2688999999999999999999999999999999999874
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=5.3e-06 Score=75.34 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=65.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhccc-----CceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003400 276 NQGTLVVFNLDPSVSNEDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (823)
Q Consensus 276 ~~~tLfV~NLp~~vteedL~~~Fs~f-----G~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (823)
..++|-|-|||.++++..|+.+.+++ |.|+.|.+.+...| |+|+|.|...|.+|.-+|+|.+|.|++|++.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35689999999999999999999999 99999988766544 99999999999999999999999999999864
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=5.4e-06 Score=73.75 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=59.6
Q ss_pred CCCcEEEEcCCCCC-----CCH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccc
Q 003400 190 HPSRTLFVRNINSN-----VED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (823)
Q Consensus 190 ~~srtLfV~NLP~~-----vte----eeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~ 260 (823)
.|..||+|.-++.+ +-+ .+|.+.|.+||+|..+++.... +||+|.+.++|.+|++ |+|..+.|+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 46789999988743 222 5689999999999998853322 9999999999999999 999999999999
Q ss_pred ccccC
Q 003400 261 IHFSI 265 (823)
Q Consensus 261 V~~a~ 265 (823)
|++..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98753
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.73 E-value=4e-05 Score=69.61 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC-----CCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccccccccc
Q 003400 190 HPSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (823)
Q Consensus 190 ~~srtLfV~NLP~~vteeeLr~lFs~f-----G~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~ 262 (823)
...++|-+-|||..++++.|+.+.+.+ |+|..|.+...+.| |+|+|.|...|-+|.-+|+|..|.|++|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 346899999999999999999999999 99999987665554 9999999999999999999999999999875
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.00065 Score=61.19 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-----CCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~-----fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~ 265 (823)
..++|.|.|||++++++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++. ....|.+.+|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 4689999999999999999999997 25899987544 7899999999999999983 4677888888887654
Q ss_pred CCCCCCCCCCCccceeeecCCCCCC
Q 003400 266 PKDNPSDKDLNQGTLVVFNLDPSVS 290 (823)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vt 290 (823)
+. ...+|++.+|++.++
T Consensus 83 ~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CC--------CCCCCCCCSCCCCCC
T ss_pred CC--------CcceEeeecCCCCCC
Confidence 32 345899999999875
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=0.00062 Score=61.33 Aligned_cols=83 Identities=24% Similarity=0.317 Sum_probs=71.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhcc-----cCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGA-----YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~-----fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (823)
..+|.|.|||.+++++.|.-.|+. =|.|..++..+ +-|+|+|.+.+.|++.|+. ..+.+.|..|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 468999999999999999999986 26899998765 6799999999999999983 36799999999999888
Q ss_pred Ccccchhhhccc
Q 003400 352 GGARRNLMLQLN 363 (823)
Q Consensus 352 ~~~r~~~~~ql~ 363 (823)
...+|.+++.+.
T Consensus 84 ~~~~r~ll~gl~ 95 (104)
T 2dhx_A 84 RAPARLLLQGLP 95 (104)
T ss_dssp CCCCCCCCCSCC
T ss_pred CCcceEeeecCC
Confidence 888887777663
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.81 E-value=0.0011 Score=59.80 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=62.3
Q ss_pred cceeeecCCCCC-CH----HHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003400 278 GTLVVFNLDPSV-SN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (823)
Q Consensus 278 ~tLfV~NLp~~v-te----edL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (823)
++|+|.||+.++ .. +.++++|..|+++......+.-+ -..|.|.+.++|.+|...|++..+.|++|+|-|+++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 589999998866 32 56789999999887776543323 4789999999999999999999999999999999854
Q ss_pred c
Q 003400 353 G 353 (823)
Q Consensus 353 ~ 353 (823)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0038 Score=56.41 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=62.5
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCccccccccccccCC
Q 003400 192 SRTLFVRNINSNV-E----DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (823)
Q Consensus 192 srtLfV~NLP~~v-t----eeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~gr~L~V~~a~p 266 (823)
.++|+|.||+.++ + .+.++++|..|+++.+.... ++=.-..|.|.++++|.+|...|++..+.|+.|+|-|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999999876 3 25778999999998876532 3334579999999999999999999999999999999875
Q ss_pred C
Q 003400 267 K 267 (823)
Q Consensus 267 k 267 (823)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.13 E-value=0.013 Score=54.22 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=60.9
Q ss_pred CCccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCCccCC-ceEEEEecCC
Q 003400 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRP 351 (823)
Q Consensus 275 ~~~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G-r~I~V~~s~~ 351 (823)
....-|.|.+.|... ...|.+.|++||+|.+.... ....+-.|+|.++.+|++||. .||..|.| -.|-|.+...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCC
Confidence 345689999999885 56788899999999998873 456799999999999999998 59999985 6677777543
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.03 E-value=0.014 Score=51.61 Aligned_cols=64 Identities=5% Similarity=0.051 Sum_probs=53.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-eCC------CcccEEEEEeCCHHHHHHHHHHhcCCcccc
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-TAC------KHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~~~------ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g 256 (823)
++|.||+||+.+||+++.+.+..+.++...+ +.+ ..-.-|+|.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999998776544 222 123469999999999999999999988754
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.72 E-value=0.058 Score=48.09 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc
Q 003400 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 250 (823)
Q Consensus 192 srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Ln 250 (823)
...++| +.|+++...||.++|+.||.|.--++. -..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 356677 999999999999999999965533343 4579999999999999999764
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.31 E-value=0.084 Score=47.05 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=43.5
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~Ln 335 (823)
..++| +.|+++...||.++|+.||.|.--.+. ...|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 35666 999999999999999999855333332 3469999999999999999764
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.11 E-value=0.12 Score=47.81 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=56.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcCCcccc-ccccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHF 263 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng~~l~g-r~L~V~~ 263 (823)
..+-|.|-+.|+.. ...|...|++||+|.+... .....+..|.|.+..+|++|+. .||..+.+ ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 45789999999885 6777889999999998865 3456799999999999999999 58888864 4444544
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.76 E-value=0.054 Score=48.41 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=43.3
Q ss_pred ceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003400 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (823)
Q Consensus 279 tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~Ln 335 (823)
.++| +.|+++...||.++|+.||.|.--.+. ...|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 4566 999999999999999999954333333 3469999999999999999875
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.63 E-value=0.076 Score=47.46 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=44.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhc
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 250 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Ln 250 (823)
..++| +.|+++...||..+|+.||.|.--++. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999955543343 4579999999999999999775
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.12 E-value=0.087 Score=47.00 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=51.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-eCCC------cccEEEEEeCCHHHHHHHHHHhcCCccccc
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~~~k------srG~AFV~F~~~e~A~~Ai~~Lng~~l~gr 257 (823)
-+-+|.||.||+.+||+++.+.+..+-++...+ +.++ .-.-|+|.|.+.++.....+.++|..+.+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 456899999999999999998888765553322 1111 223599999999999999999999887543
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.67 E-value=0.046 Score=61.95 Aligned_cols=56 Identities=9% Similarity=0.273 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHH
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 247 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~ 247 (823)
..|.|+|. .|..+++++|.++|++||+|.++.......-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45899997 799999999999999999999997655555699999999999997765
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.14 E-value=0.11 Score=48.82 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=55.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEE-EeC----------------C--CcccEEEEEEcCHHHHHHHHHHhCCC
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RET----------------P--HKRHHKFIEFYDVRAAEAALKSLNRS 337 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~i-ri~----------------~--~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (823)
..-|.|.+.|++.+ ..+-+.|++||.|.+- ... + ...++..|+|++..+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34688888876665 4577889999999772 111 1 135678999999999999998 5999
Q ss_pred ccCCceEEEEecC
Q 003400 338 DIAGKRIKLEPSR 350 (823)
Q Consensus 338 ~i~Gr~I~V~~s~ 350 (823)
.|.|..|=|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888875
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.41 E-value=0.074 Score=60.28 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=43.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHH
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~ 333 (823)
.++|+|. .+..+++.+|.+.|++||.|.++........||.|||.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4689998 7999999999999999999999988766677999999999998877653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.92 E-value=0.43 Score=44.77 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-eCC------------------CcccEEEEEeCCHHHHHHHHHHhcC
Q 003400 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TAC------------------KHRGFVMISYYDIRAARTAMRALQN 251 (823)
Q Consensus 191 ~srtLfV~NLP~~vteeeLr~lFs~fG~I~~v~-~~~------------------ksrG~AFV~F~~~e~A~~Ai~~Lng 251 (823)
...-|.|-+.|++. ...+.+.|++||.|.+-. ... ....+..|+|.+..+|++|+. .+|
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34567777887654 456677899999987622 110 135688999999999999999 599
Q ss_pred Ccccccccccccc
Q 003400 252 KPLRRRKLDIHFS 264 (823)
Q Consensus 252 ~~l~gr~L~V~~a 264 (823)
..|.|.-|-|.+.
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9998886666654
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.56 E-value=6.5 Score=44.99 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEeCCHHHHHHHHHHhcC
Q 003400 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251 (823)
Q Consensus 193 rtLfV~NLP~~vteeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~~~e~A~~Ai~~Lng 251 (823)
..++|+ +|..+...+|.++|+.||.|.-.++ ....|||.|.+.+.|..+++++..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 577777 9999999999999999997654444 345699999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.77 E-value=15 Score=42.08 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=44.3
Q ss_pred cceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhC
Q 003400 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (823)
Q Consensus 278 ~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~Ln 335 (823)
..++|+ ++..+...+|.++|+.||.|.-..++ ...|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 456665 89999999999999999976444443 4569999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.87 E-value=3.3e+02 Score=23.56 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=52.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhcccCceEEEEeCCCcccEEEEEEcCHHHHHHHHHHhCCC-------ccCCceEEEEec
Q 003400 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-------DIAGKRIKLEPS 349 (823)
Q Consensus 277 ~~tLfV~NLp~~vteedL~~~Fs~fG~I~~iri~~~srG~aFVeF~d~e~A~kAl~~LnG~-------~i~Gr~I~V~~s 349 (823)
.+-+-|-|+|..+-..++.-.....|---.|... .|.|.|+|.+.++-.-|+..|-.. +|.|....|--.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvist 88 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVIST 88 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECC
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeec
Confidence 3457788999999888887777777766667653 477999999999999999876221 455655555444
Q ss_pred CCCc
Q 003400 350 RPGG 353 (823)
Q Consensus 350 ~~~~ 353 (823)
-|..
T Consensus 89 iped 92 (129)
T 4eyt_A 89 IPED 92 (129)
T ss_dssp CCHH
T ss_pred CCch
Confidence 4443
Done!