Query 003403
Match_columns 823
No_of_seqs 294 out of 1516
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 22:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 1.4E-31 3E-36 298.4 34.7 350 405-799 6-406 (406)
2 PRK10631 p-hydroxybenzoic acid 100.0 2.7E-30 5.9E-35 302.8 32.8 228 403-648 2-244 (652)
3 TIGR01667 YCCS_YHJK integral m 100.0 1.6E-27 3.5E-32 284.0 50.6 557 15-622 4-590 (701)
4 TIGR01666 YCCS hypothetical me 100.0 2.7E-27 5.8E-32 281.2 49.1 579 18-660 7-616 (704)
5 PF04632 FUSC: Fusaric acid re 100.0 4.9E-29 1.1E-33 298.1 29.6 202 409-621 1-208 (650)
6 PRK11427 multidrug efflux syst 100.0 1.1E-23 2.3E-28 245.9 52.5 210 406-622 347-564 (683)
7 COG1289 Predicted membrane pro 99.9 9.8E-18 2.1E-22 201.7 44.4 205 405-622 350-557 (674)
8 PF04632 FUSC: Fusaric acid re 99.9 1.9E-17 4.2E-22 198.4 46.9 503 18-580 1-515 (650)
9 PRK11427 multidrug efflux syst 99.8 2.1E-18 4.5E-23 201.9 27.9 166 405-580 27-203 (683)
10 COG1289 Predicted membrane pro 99.7 7.8E-15 1.7E-19 176.7 28.2 175 405-581 6-186 (674)
11 COG4129 Predicted membrane pro 99.6 9.3E-14 2E-18 152.1 29.6 199 408-620 8-208 (332)
12 PF13515 FUSC_2: Fusaric acid 99.6 8.7E-14 1.9E-18 132.2 16.2 126 422-550 1-128 (128)
13 PF06081 DUF939: Bacterial pro 99.5 2.8E-13 6.2E-18 131.9 17.7 137 411-554 5-141 (141)
14 KOG4711 Predicted membrane pro 99.5 2.7E-14 5.9E-19 165.9 10.3 287 393-695 80-406 (625)
15 PRK10631 p-hydroxybenzoic acid 99.4 5.4E-08 1.2E-12 115.7 47.8 478 19-572 9-519 (652)
16 PF11744 ALMT: Aluminium activ 99.2 8.3E-11 1.8E-15 132.3 15.5 254 18-278 10-277 (406)
17 PF10337 DUF2422: Protein of u 99.2 1.5E-07 3.3E-12 109.0 39.2 249 405-658 11-320 (459)
18 PF10334 DUF2421: Protein of u 98.5 1.4E-05 3.1E-10 84.3 22.0 208 555-800 2-226 (229)
19 PF12805 FUSC-like: FUSC-like 98.5 8.4E-05 1.8E-09 80.9 27.8 151 462-617 3-159 (284)
20 TIGR01666 YCCS hypothetical me 98.5 0.00024 5.2E-09 86.1 34.2 171 407-581 5-177 (704)
21 TIGR01667 YCCS_YHJK integral m 98.4 0.00087 1.9E-08 81.5 35.4 171 407-581 5-177 (701)
22 PF10337 DUF2422: Protein of u 97.6 0.00041 8.8E-09 80.7 11.9 258 18-278 15-318 (459)
23 COG4129 Predicted membrane pro 97.4 0.0039 8.4E-08 69.2 15.2 148 46-204 29-178 (332)
24 PF11168 DUF2955: Protein of u 97.3 0.0059 1.3E-07 59.7 14.6 137 413-553 2-139 (140)
25 PF12805 FUSC-like: FUSC-like 92.7 0.97 2.1E-05 49.3 11.5 99 102-205 24-123 (284)
26 PF06081 DUF939: Bacterial pro 92.6 0.62 1.3E-05 45.6 8.8 72 23-102 8-80 (141)
27 PF10334 DUF2421: Protein of u 90.8 1.3 2.7E-05 46.9 9.4 107 174-280 1-111 (229)
28 PF13515 FUSC_2: Fusaric acid 86.6 0.97 2.1E-05 42.5 4.6 48 50-98 12-60 (128)
29 KOG4711 Predicted membrane pro 84.7 0.48 1E-05 56.7 1.8 172 6-187 74-263 (625)
30 TIGR02865 spore_II_E stage II 82.1 1.5E+02 0.0032 37.3 23.0 81 462-550 197-279 (764)
31 PF14362 DUF4407: Domain of un 68.3 1.9E+02 0.0041 31.7 21.9 44 529-572 79-123 (301)
32 PF12732 YtxH: YtxH-like prote 63.6 76 0.0016 27.4 9.5 43 538-581 3-45 (74)
33 COG5336 Uncharacterized protei 60.0 32 0.0007 32.2 6.6 39 452-490 44-82 (116)
34 PF12732 YtxH: YtxH-like prote 59.9 48 0.001 28.6 7.6 48 158-206 3-50 (74)
35 KOG4331 Polytopic membrane pro 48.0 3.1E+02 0.0067 34.4 14.0 15 537-551 163-177 (865)
36 PF05478 Prominin: Prominin; 45.7 4.1E+02 0.009 33.6 15.5 40 540-581 153-192 (806)
37 COG3851 UhpB Signal transducti 43.6 5.6E+02 0.012 29.4 18.2 72 503-581 220-295 (497)
38 PRK11677 hypothetical protein; 43.2 1.9E+02 0.004 28.4 9.3 41 538-578 8-49 (134)
39 PF12126 DUF3583: Protein of u 39.8 3.1E+02 0.0067 30.2 11.1 111 562-694 39-152 (324)
40 PF12252 SidE: Dot/Icm substra 39.6 6.7E+02 0.015 32.5 15.1 33 716-759 1113-1145(1439)
41 COG4980 GvpP Gas vesicle prote 37.7 3.7E+02 0.008 25.7 11.2 43 537-579 8-53 (115)
42 PF01277 Oleosin: Oleosin; In 34.4 4.2E+02 0.0092 25.4 12.0 12 529-540 92-103 (118)
43 PF06694 Plant_NMP1: Plant nuc 33.2 7.2E+02 0.016 27.7 13.1 136 594-759 171-312 (325)
44 COG4980 GvpP Gas vesicle prote 30.8 3.5E+02 0.0075 25.8 8.7 48 156-204 7-54 (115)
45 PRK10263 DNA translocase FtsK; 30.8 1E+03 0.022 31.9 15.5 10 430-439 44-53 (1355)
46 PF04982 HPP: HPP family; Int 30.2 4.8E+02 0.011 24.8 11.6 61 438-500 7-67 (120)
47 COG3448 CBS-domain-containing 29.5 1.5E+02 0.0033 32.8 6.8 92 407-500 26-124 (382)
48 COG1963 Uncharacterized protei 29.2 2.1E+02 0.0046 28.3 7.2 32 420-451 58-91 (153)
49 COG1296 AzlC Predicted branche 25.7 3.6E+02 0.0077 29.0 8.9 15 458-472 145-159 (238)
50 PF10011 DUF2254: Predicted me 25.5 1E+03 0.022 27.0 15.0 19 457-475 46-64 (371)
51 PF06295 DUF1043: Protein of u 25.5 5.5E+02 0.012 24.7 9.4 30 539-568 5-35 (128)
52 COG3448 CBS-domain-containing 24.5 2.8E+02 0.006 30.9 7.7 153 12-177 22-180 (382)
53 PRK09776 putative diguanylate 24.0 1E+03 0.022 30.7 14.4 15 458-472 43-57 (1092)
54 KOG1118 Lysophosphatidic acid 22.9 1.1E+03 0.024 26.4 13.1 81 703-797 150-233 (366)
55 PF06496 DUF1097: Protein of u 22.6 7.2E+02 0.016 24.2 16.0 58 420-480 8-65 (144)
56 TIGR00844 c_cpa1 na(+)/h(+) an 22.3 5.3E+02 0.011 32.6 10.6 18 461-478 213-230 (810)
57 PRK10490 sensor protein KdpD; 22.2 9.7E+02 0.021 30.7 13.4 12 202-213 206-217 (895)
58 PF10031 DUF2273: Small integr 21.3 2.4E+02 0.0052 22.9 5.1 18 458-475 8-25 (51)
59 PTZ00478 Sec superfamily; Prov 21.2 2.3E+02 0.005 25.4 5.3 53 736-791 16-68 (81)
60 KOG3684 Ca2+-activated K+ chan 20.7 1.4E+03 0.031 26.9 16.4 24 531-554 310-333 (489)
61 PF10779 XhlA: Haemolysin XhlA 20.1 1E+02 0.0022 26.5 2.9 22 456-477 48-69 (71)
62 PF04286 DUF445: Protein of un 20.1 74 0.0016 35.3 2.6 20 458-477 344-363 (367)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=1.4e-31 Score=298.37 Aligned_cols=350 Identities=16% Similarity=0.185 Sum_probs=249.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003403 405 PSLESLVFALKCSLSLGLAVILGLMYNK-----ENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQ 479 (823)
Q Consensus 405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l-----~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~ 479 (823)
.|++++.|++|+++|++|..++.+.-.. .++.||++||++|+.|++|+|+.||++|++||++|+++|+++..+..
T Consensus 6 ~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~ 85 (406)
T PF11744_consen 6 DDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLAS 85 (406)
T ss_pred cCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999877653111 78999999999999999999999999999999999999999887764
Q ss_pred chh---hHHHHHHHHHH--HHHHHHh-cch---hhHHHHHHHHHHHHHHHh-ccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 003403 480 KSV---NFRFLPLLPWI--IFSSFLR-HSR---MYEEAGAISAVIGALLIL-GRKNYGTPSEFAIARITEASLGLICFII 549 (823)
Q Consensus 480 ~~p---~~~~l~L~vwi--~~~s~l~-~~~---~Y~lag~~~alI~~~~vl-g~~~~~~~~~~A~~Rv~ei~IGivia~~ 549 (823)
..+ ...++.+.+|+ +..+|.+ .|+ .|.+++.+..+ +|.++. +....++.++.|..|+..|++|++++++
T Consensus 86 ~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~L-Tf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~ 164 (406)
T PF11744_consen 86 LSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFIL-TFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLL 164 (406)
T ss_pred hcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHH-HHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 432 23334444443 4567776 221 24444444433 233332 2223456789999999999999999999
Q ss_pred HHHHccCchhHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcC----C-CChhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003403 550 VEILFQPARAATLAKAQLAQSLQALQDGIKDIV---LFADQKG----K-ATPTALRDKQKRLKSHINELDKFIAEAEMEP 621 (823)
Q Consensus 550 V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~---L~~~~~~----~-~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP 621 (823)
|+.++||.|+++.|++.+...++.+++.++... +.....+ . ..++...+..+.+..+-.+.+.+++.|+|||
T Consensus 165 vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WEP 244 (406)
T PF11744_consen 165 VSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWEP 244 (406)
T ss_pred HHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhcc
Confidence 999999999999999999999999888877663 1111111 0 0111222334444444477999999999999
Q ss_pred CC--CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhhhhhHhHHHHHHHHHhhhhhhhHHHHHH
Q 003403 622 NF--WFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKCFEEVILI 699 (823)
Q Consensus 622 ~~--w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~~~v~~~~~~~~~~v~~~l~~l~~~~~~ 699 (823)
+| .+..|||++|.++...+|+++..+.++..++.. +-| .| .++...+++.|.+...-.+..++++..
T Consensus 245 ~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~s---eiq-~p---~~~r~~~~~~~~~~~~e~~kvLrel~~---- 313 (406)
T PF11744_consen 245 PHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNS---EIQ-AP---PELRQKFQEECTRVSSESAKVLRELSN---- 313 (406)
T ss_pred cccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccc---ccc-cc---HHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 99 456999999999999999999999999888732 112 12 345566788888666666666666633
Q ss_pred hhHHhhhhhhhhcccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcCC-------------------
Q 003403 700 KSLAVLAPERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGY------------------- 760 (823)
Q Consensus 700 ~s~~~l~~~~~~~~~~~dle~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~------------------- 760 (823)
.++.|+.+++. +..+.+.++++++|+..
T Consensus 314 -----------------~ik~m~~~~~~----------------~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~~~~~~ 360 (406)
T PF11744_consen 314 -----------------SIKTMTKSSSI----------------DDHVANLKEAAEDLQSKLDSQSYLLLNSESPERSFL 360 (406)
T ss_pred -----------------HHHhcccCCCc----------------hhHHHHHHHHHHHHHHHHHhCCccccCCchhhhhhc
Confidence 23334444321 01234444444444421
Q ss_pred -------cccccccccchhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003403 761 -------DGEEKHLSQTVLVLNGLGFCISSLMKETTKIEKEIKELI 799 (823)
Q Consensus 761 -------~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l~~~v~el~ 799 (823)
...+..+.-++++++.+++.|-|++..++.+.+.|+||+
T Consensus 361 ~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~~v~eLa 406 (406)
T PF11744_consen 361 RPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENIVEAVEELA 406 (406)
T ss_pred cccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 113456788999999999999999999999999999984
No 2
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.98 E-value=2.7e-30 Score=302.80 Aligned_cols=228 Identities=20% Similarity=0.276 Sum_probs=201.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhh---------ccChhHHHHHHHHHHHHHHHHHHHHHH
Q 003403 403 LLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISF---------ATNRQATFKVANARAQGTAMGSVYGVI 473 (823)
Q Consensus 403 ~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~---------qps~GaT~~k~~~Ri~GTvlGav~g~~ 473 (823)
..|++.+|+|++|+++|+++|+++++++++++||||++||+||+ ||..|++++||++|++||++|+++|++
T Consensus 2 ~~p~~~~~~falk~~lA~~LAL~ia~~l~L~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~ 81 (652)
T PRK10631 2 FSIANQRLRFAVKLAFAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALV 81 (652)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHH----hcchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH
Q 003403 474 CSFLLQKSVNFRFLPLLPWIIFSSFL----RHSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICF 547 (823)
Q Consensus 474 ~~~l~~~~p~~~~l~L~vwi~~~s~l----~~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia 547 (823)
++..+++.|+++.+++++|+++|.|. +.+++|+ ++|||+++|+++.+. +|+.+|+++++|+.||+|||+|+
T Consensus 82 l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~~~sY~~~LaGyTa~iI~~~~~~---~p~~~f~~A~~R~~Ei~iGi~ca 158 (652)
T PRK10631 82 IIIATIRAPLLMILLCCIWAGFCTWISSLVRVENSYAWGLAGYTALIIVITIQP---EPLLTPQFAVERCSEIVIGIVCA 158 (652)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877653 4566676 999999999888554 78899999999999999999999
Q ss_pred HHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 003403 548 IIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLP 627 (823)
Q Consensus 548 ~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~p 627 (823)
.+|+.+++|++..+.+.+++++++.+..++..+. + . + .+.++.+..+.++..++.+++.+..+ .+
T Consensus 159 ~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~-l-~---~-~~~~~~~~~~~~L~~di~~le~lr~~---------~~ 223 (652)
T PRK10631 159 ILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLC-I-K---H-GDKEEVDKAWGDLVRRTTALNGMRSN---------LM 223 (652)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHH-h-c---c-CccchhhHHHHHHHHHHHHHHHHHHh---------hc
Confidence 9999999999999999999999999999999987 3 2 1 12335667889999999999999998 45
Q ss_pred CChhhHHHHHHHHHHHHHHHH
Q 003403 628 FHGSCYENILASLSRMADLLL 648 (823)
Q Consensus 628 f~~~~y~~l~~~l~rL~d~l~ 648 (823)
|+....++..+.+++|.+++.
T Consensus 224 ~e~~~~r~~~~~l~~L~~~~l 244 (652)
T PRK10631 224 MESSRWQRANRRLKALNTLSL 244 (652)
T ss_pred cCCcchhhHHHHHHHHHHHHH
Confidence 556667777777777776665
No 3
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.97 E-value=1.6e-27 Score=284.00 Aligned_cols=557 Identities=17% Similarity=0.120 Sum_probs=306.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHhh-hcCCcccCCCcccCcchhhhhhhhh-c-cCchhHHHHHHHHHHHHHHHHhHhHHHHH
Q 003403 15 WRRRLGSALRTALACSIVGFTT-LYSPEHLRHMPAFPAFSYVTTILIL-S-DATLGDTLRGCWHALYATIQIMIPSILCL 91 (823)
Q Consensus 15 wr~~l~~a~R~alac~i~g~~~-~y~p~~~~~~~~fps~~yv~t~~i~-s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l 91 (823)
++..+-.++|+.+|.+++..+. .+| .|......+.=|+ + =....|..++-+..+..|..+...+-+..
T Consensus 4 ~~~~~~~~l~v~ia~~~~~~~~~~~g---------~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v 74 (701)
T TIGR01667 4 LNQKLVYCLPVFIALMGAELRIWWFG---------LLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLV 74 (701)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhC---------CccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778899999987754421 122 2222222222222 1 22444555554444333433333333332
Q ss_pred hhcCCCCCChhHHHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEEEEeeCCccccee--eehhhHHHHHHHHHHHHH
Q 003403 92 WLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVM--HPIHVASSTALGALASVV 169 (823)
Q Consensus 92 ~~ig~~~~~~~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~~~~~~~~t~~i~--~p~~v~~~~~~G~~~~~~ 169 (823)
.+.-|.. +...+.++++||++.+-..-++-..+|++|.. ++.|.+..-++ +...| +| ....+|++--.+
T Consensus 75 ~ll~~~p---~~~~~~l~~~tf~~~mlga~G~r~~~I~f~~L-~~aiytml~~~-~~~~w~~~p----llll~GalwY~l 145 (701)
T TIGR01667 75 QLLFPKP---WLFPFLLTLLTFGFILLGALGQRYATIAFASL-LAAIYTMLGAG-EVPVWFIEP----LLILAGTLWYGL 145 (701)
T ss_pred HHHhcch---HHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHH-HHHHHHHcCcc-cccHHHHHH----HHHHHHHHHHHH
Confidence 2221211 33445666778886666555655667777654 22222222222 23344 44 445668888888
Q ss_pred HHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccchh-h--hhhHHHHH---HHHHHHHHHHHHHHhhccCc
Q 003403 170 AMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCA--QDNTA-A--LDSISEAK---SLFKAGAKQLLSIKDKQEGM 241 (823)
Q Consensus 170 a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~--~~~~~-a--~~~i~~~k---~l~~a~~~~l~~i~~~~~~~ 241 (823)
..++-|+.++.+-+|+.+.+.-+..++-|+.=.+-|-- .++.+ + ...+.+.+ .+..+.+.++.+.+.
T Consensus 146 ~sll~~~l~p~rp~q~~La~~y~~La~yL~aKa~lf~p~~~~~~~~~~~~l~~~n~~lv~~ln~~~~~ll~r~~~----- 220 (701)
T TIGR01667 146 LTLIWFLLFPNQPLQESLSRLYRELAEYLEAKSSLFDPDQHTDPEKALLPLAVRNGKVVDALNQCKQQLLMRLRG----- 220 (701)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 77778888888889999888888888877765555521 11111 1 11122211 122233333322221
Q ss_pred cccccccccCCCCCCChHHHHHh---hhccccchHHHHhhCCC---CCcccccchhHHHHHHHHHHHHHHHH-Hhhcc--
Q 003403 242 LWERPQIRFLKPNYKDPREKLQE---LEIPIRGMELALTSCPS---FPVGMIDEDLRDVLQSLKAEIGLKLE-QAKCY-- 312 (823)
Q Consensus 242 ~wE~~~~~~~~~~~~~~~~~~~~---L~~~Lrgm~~al~~~~~---~p~~i~~~~~~~~l~~l~~~is~~~~-~a~~~-- 312 (823)
+......+++-+ ..+||. |.+..+..+ ..-..-+.++.....++.+..+...+ -+.+.
T Consensus 221 -----------~~~~~~~~rll~~y~~A~di~--E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ai~~ 287 (701)
T TIGR01667 221 -----------NRTDPLTKRMLRYYFEAQDIH--ERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLARDILL 287 (701)
T ss_pred -----------CCCCchHHHHHHHHHHHHHHH--HHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111111111111 122222 333333111 00000111111123334444444442 22111
Q ss_pred -cCCCCCCCcchhhhhHHhhhhhhccCCC-CCCCChhHHHH-hHHHhhccCCCC--CCcc-cccccccccccCCCCcccc
Q 003403 313 -ASFDATTAPETQKNCKDESLWSLKAISS-TEDVPASFFFY-CIKLLQDGLPVA--PNAE-FVVNETRETHTEGSSESQN 386 (823)
Q Consensus 313 -~~~~~~~~~e~~~~~~~~~l~~~~~~~~-~~~~p~~fF~F-~~~ll~~~~~~~--~~~~-~~~~~~~~~~k~~~~~~~~ 386 (823)
.|.......+...+.+.+++++.++-.. +..+....+++ +++.+.++.... ++.. +... .++.-...+|...
T Consensus 288 ~~~~~~~~~~~~~~~~l~~sl~~l~~~~~~~~~~~~l~~l~~nl~~i~~~l~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 365 (701)
T TIGR01667 288 RQPYYHRLRTERALEKQIAALEKIRQNQAPDDLLGQLGYLLDNLQSIDWQLARIARVLATAKPLY--ARDLLADKQPRGL 365 (701)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--hhhhhcccCchhh
Confidence 2222222233445556666654443222 22122222222 333333222110 0000 0000 0001111112111
Q ss_pred cch-hhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHH
Q 003403 387 QNK-FKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTA 465 (823)
Q Consensus 387 ~~~-~~~~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTv 465 (823)
+.. ...++++. +++..++||+|++++++++++++.+++++||||+++|+++|++|+.|+|++|+.+|++||+
T Consensus 366 ~~~~~~l~~~l~-------~~S~~fRhAlR~ala~~~a~~i~~~l~l~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl 438 (701)
T TIGR01667 366 KDILPRLKSHLT-------PESPLFRHAVRLSLVVMLGYAILMGTALHLGYWILLTTLFVCQPNYGATRLRLVQRIIGTV 438 (701)
T ss_pred HHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 100 00113333 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Q 003403 466 MGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEA-GAISAVIGALLILGRKNYGTPSEFAIARITEASLGL 544 (823)
Q Consensus 466 lGav~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~~~~~Y~la-g~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGi 544 (823)
+|+++|+++..+++.. .. .+.++++.+++.+.-..++|+.+ .++|.++.+..-+ ...+.++++..|+.||+||+
T Consensus 439 ~G~llg~~l~~l~p~~-~~-~l~l~v~~~~~~~~~~~~~Y~~a~~fiT~~vll~~~l---~~~~~~~~a~~Rl~DTliG~ 513 (701)
T TIGR01667 439 VGLVIGVALHFLIPSL-EG-QLTLMVITGVAFFAFRSKNYGWATVFITLLVLLCFNL---LGLDGEQYILPRLIDTLIGC 513 (701)
T ss_pred HHHHHHHHHHHHcCcH-HH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh---cccchhHHHHHHHHHHHHHH
Confidence 9999999988776643 32 23333444333333333556632 3344332221111 11245689999999999999
Q ss_pred HHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003403 545 ICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPN 622 (823)
Q Consensus 545 via~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~ 622 (823)
+++++++.++||.|....+++.++++++...++++.+. .....++.++.+++..|++...+..+++..++.+..||.
T Consensus 514 ~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il-~~~~~~~~~~~~yr~aRr~a~~a~a~l~~~~~~m~~EP~ 590 (701)
T TIGR01667 514 LIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLIL-SQYPQGKPDDLAYRIARRNAHNTDAALSTTLSNMMQEPA 590 (701)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999883 222223334445677788899999999999999999986
No 4
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.97 E-value=2.7e-27 Score=281.19 Aligned_cols=579 Identities=15% Similarity=0.054 Sum_probs=314.4
Q ss_pred hHHHHHHHHHHHHHHHHhh-hcCCcccCCCcccCcchhhhhhhhh-c-cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhc
Q 003403 18 RLGSALRTALACSIVGFTT-LYSPEHLRHMPAFPAFSYVTTILIL-S-DATLGDTLRGCWHALYATIQIMIPSILCLWLV 94 (823)
Q Consensus 18 ~l~~a~R~alac~i~g~~~-~y~p~~~~~~~~fps~~yv~t~~i~-s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~i 94 (823)
+.--++|..+|...+..+. .++- +..+...+.=++ + =...-|..++-+..+..|..+...+.+..-+.
T Consensus 7 ~~~~~lri~ia~~~~~~~~~~~~~---------~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll 77 (704)
T TIGR01666 7 KVIYTIPIFIALNGAAVGIWFFDI---------SSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELL 77 (704)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc---------hhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999887654321 1231 222222211111 1 12333445554444334444433333332222
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcccCCchhhhhhhcccee--eeEEEEEeeCCcccceeeehhhHHHHHHHHHHHHHHHh
Q 003403 95 GPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIV--IVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVAML 172 (823)
Q Consensus 95 g~~~~~~~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~--i~~v~~~~~~~~t~~i~~p~~v~~~~~~G~~~~~~a~l 172 (823)
-|.. +...+.++++||++.+-..-++=...||+|+.. ++.+++.- +...++. -.....+|++--.+..+
T Consensus 78 ~~~p---~lf~~~l~~~tf~~~mlga~G~Rya~Iaf~tLliaiytmlg~~----~~~~w~~--~pllll~GalwY~llsl 148 (704)
T TIGR01666 78 FGKP---WLFAVGLTVSTFGFIMLGAVGQRYATIAFGSLLVALYTMLGYI----EVNVWFI--QPVMLLCGTLWYSVVTL 148 (704)
T ss_pred hcCc---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccc----ccchHHH--HHHHHHHHHHHHHHHHH
Confidence 1222 344456667777765554445445678887774 33333321 1112221 23556778888888888
Q ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-h-hhhhHHH-------HHHHHHHHHHHHHHHHhhccCccc
Q 003403 173 LPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNT-A-ALDSISE-------AKSLFKAGAKQLLSIKDKQEGMLW 243 (823)
Q Consensus 173 lP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~-~-a~~~i~~-------~k~l~~a~~~~l~~i~~~~~~~~w 243 (823)
+-|+.++.+-+|+.+.+.-+..++-|+.=.+-|- +|+. + ....+.. +.-+-.+.+.++.+.+.
T Consensus 149 ~~~~l~p~rp~q~~LA~~y~~La~yL~aka~lf~-p~~~~~~~~~~~~~a~~n~~lv~~ln~ar~~Ll~r~~~------- 220 (704)
T TIGR01666 149 IVHLFFPNRPVQENLAKAFCQLAEYLETKSCFFD-PDEVAEIQKKHLNFAMKNANVVTALNQVKTALLTRIRG------- 220 (704)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhCC-CCccchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-------
Confidence 8889999999999999888888888777665443 2221 0 0000111 11111122233222221
Q ss_pred cccccccCCCCCCChHH-HHHh--hhccccchHHHHhhCCCCC---cccccchhHHHHHHHHHHHHHHHH-Hhhc---cc
Q 003403 244 ERPQIRFLKPNYKDPRE-KLQE--LEIPIRGMELALTSCPSFP---VGMIDEDLRDVLQSLKAEIGLKLE-QAKC---YA 313 (823)
Q Consensus 244 E~~~~~~~~~~~~~~~~-~~~~--L~~~Lrgm~~al~~~~~~p---~~i~~~~~~~~l~~l~~~is~~~~-~a~~---~~ 313 (823)
+......+ .++- +.+|+. |++..+-.+-+ -..-+.++-.-..++.+..+...+ .+.+ ..
T Consensus 221 ---------~~~~~~~~r~l~~y~~AqDih--Era~ssh~~y~~L~~~f~~sdvL~~~~~ll~~~a~ac~~la~ai~~~~ 289 (704)
T TIGR01666 221 ---------QHRHPLTQRMLRYYFAAQDIH--ERASSSHFDYQQLTEHFKNSDLLFRFQRLLELQAQACKEITASIRLNK 289 (704)
T ss_pred ---------CCCChHHHHHHHHHHHHHHHH--HHHHHcccCHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11111111 1110 122222 33333311100 000011111112233333333332 1111 12
Q ss_pred CCCCCCCcchhhhhHHhhhhhhcc--CCCCCCCChhHHHH-hHHHhhccCCCC--CCcccccccccccccCCCCcccccc
Q 003403 314 SFDATTAPETQKNCKDESLWSLKA--ISSTEDVPASFFFY-CIKLLQDGLPVA--PNAEFVVNETRETHTEGSSESQNQN 388 (823)
Q Consensus 314 ~~~~~~~~e~~~~~~~~~l~~~~~--~~~~~~~p~~fF~F-~~~ll~~~~~~~--~~~~~~~~~~~~~~k~~~~~~~~~~ 388 (823)
|.......+...+.+.+++++.+. ++..+.+.....++ ++..+.++.... ++..+. .+++....+|+....
T Consensus 290 ~~~~~~~~~~al~~l~~sl~~~~~~~~~~~~~~~~L~~l~~nL~~i~~~L~~~~~~~~~~~----~~~~l~~~~~~~~~~ 365 (704)
T TIGR01666 290 PYQHDKRVERALLGTLHSLDLYRAQHLNDQDLLIDLGTLLNNLQSINWQLRQLAQDTTVTE----QLAQLHDEQIHGLKN 365 (704)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccc----chhhhcccCccchhH
Confidence 222222223345555556554333 11121121122222 233222222210 111000 001111122221110
Q ss_pred -hhhhcccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHH
Q 003403 389 -KFKCKLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMG 467 (823)
Q Consensus 389 -~~~~~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlG 467 (823)
....++++. +++..++||+|++++++++++++.+++++||||+++|+++|+||+.|+|++|+.+|++||++|
T Consensus 366 ~~~~l~~~l~-------~~S~~fRhAlRlalal~~a~~i~~~l~l~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG 438 (704)
T TIGR01666 366 IWARIFSHFT-------FESPLFRHAVRLSIVLFLGYAIIQFFGFNLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLG 438 (704)
T ss_pred HHHHHHHhCC-------CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 000123344 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH
Q 003403 468 SVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRHSRMYEEA-GAISAVIGALLILGRKNYGTPSEFAIARITEASLGLIC 546 (823)
Q Consensus 468 av~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~~~~~Y~la-g~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivi 546 (823)
+++|+++..++++......+. +..+...+....++|+.+ .++|.++.+..-+ .++.++.+..|+.||+||+++
T Consensus 439 ~~lg~~ll~l~p~~~~~l~li--v~~~~l~~~~~~~~Y~~a~~fiT~~vll~~~l----~g~~~~~~~~Rl~dTlIG~~i 512 (704)
T TIGR01666 439 VVIGSPLLYFNPSLELQLVLV--VLTGVLFFAFRSNNYSFATFFITLLVLLCFNV----LGEGAAVLLPRLLDTLIGCAI 512 (704)
T ss_pred HHHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHH
Confidence 999999888876543222221 111222222234567644 4455443222111 124678999999999999999
Q ss_pred HHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 003403 547 FIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFL 626 (823)
Q Consensus 547 a~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~ 626 (823)
++++.+++||.|.+..+++.++++++...++++.+. ...+.++.++.+++..|++......+++..++.+..||.
T Consensus 513 Al~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl-~~~~~g~~~~~~yr~aRR~a~~~~a~l~~~~~~m~~EP~---- 587 (704)
T TIGR01666 513 AWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHII-SQYQFGKSDDLKYRIARRNAHNYDAALSTTVSNMNNEPV---- 587 (704)
T ss_pred HHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHH-HHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 999999999999999999999999999999998873 222224444456678899999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003403 627 PFHGSCYENILASLSRMADLLLFVAYKTEFLSQL 660 (823)
Q Consensus 627 pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~ 660 (823)
.+++..+..-++......+.+++.+|..+
T Consensus 588 -----~~~~~~~~~~~ll~~~~~llsyisaLg~~ 616 (704)
T TIGR01666 588 -----KYKAYLQKGFRLLKLNHSLLSYISALGAH 616 (704)
T ss_pred -----cchhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23333444444444444555555555543
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.97 E-value=4.9e-29 Score=298.06 Aligned_cols=202 Identities=27% Similarity=0.445 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 003403 409 SLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLP 488 (823)
Q Consensus 409 ~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~ 488 (823)
+|+|++|+++|+++|+++++++++|+||||++||+||+||+.|.+++||++|++||++|+++|++++.++++.|.+.+++
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~l~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~ 80 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQLPHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLA 80 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHH
Q 003403 489 LLPWIIFSSFLR----HSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATL 562 (823)
Q Consensus 489 L~vwi~~~s~l~----~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~ 562 (823)
+++|+++|.|+. ++++|+ ++|||+++|+++.+. +|+++|+.+++|+.||++||+|+.+|+.++||.++++.
T Consensus 81 lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~---~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~P~~~~~~ 157 (650)
T PF04632_consen 81 LALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVG---NPEQVFDLALWRVLEILIGILCATLVSMLFFPQRARRQ 157 (650)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccc---CccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 999998776653 567777 899999999877554 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003403 563 AKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEP 621 (823)
Q Consensus 563 l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP 621 (823)
+++++++.+++..+++.... + +..++.. .+.++.+++.+++.+..++..|.
T Consensus 158 l~~~l~~~l~~~~~~~~~~l--~---~~~~~~~---~~~~l~~~~~~l~~~~~~~~~e~ 208 (650)
T PF04632_consen 158 LRRRLAQRLADLARWLAALL--D---GDPDPAA---ERRRLARDIAALESLLSHARYES 208 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHh--C---CCcccch---HHHHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999873 2 2212111 67889999999999999988883
No 6
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.95 E-value=1.1e-23 Score=245.89 Aligned_cols=210 Identities=13% Similarity=0.046 Sum_probs=156.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchh--
Q 003403 406 SLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLL-QKSV-- 482 (823)
Q Consensus 406 ~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~-~~~p-- 482 (823)
++..++||+|+++|+++++++...+++++|||+++|+++|++|+.|.|.+|+.+|++||++|+++|+++..++ ++..
T Consensus 347 Np~~~R~ALRt~lAa~La~~i~~~l~w~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~l~P~l~~~ 426 (683)
T PRK11427 347 NPDYMRYALKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNI 426 (683)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccH
Confidence 6778999999999999999999999999999999999999999999999999999999999999999888544 3221
Q ss_pred hHHHHHH--HHHHHH-HHHHhcchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCc
Q 003403 483 NFRFLPL--LPWIIF-SSFLRHSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPA 557 (823)
Q Consensus 483 ~~~~l~L--~vwi~~-~s~l~~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~ 557 (823)
....+.+ ++|++. .+....+++|+ .+||+..++.+.-.. .|......+.+|+.+|++|++|+.+++.++||.
T Consensus 427 ~~Llllllp~~llg~wv~~~~~R~sYa~~~ag~T~~li~L~~l~---~p~~d~~~i~dRvl~tLLGi~iA~la~~lVwP~ 503 (683)
T PRK11427 427 VELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFALATLENVF---GPVYDLVEIRDRALGILIGTVVSAVIYTFVWPE 503 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhccc---CcccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1111122 222221 11111222454 666666555321112 233344567789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003403 558 RAATLAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPN 622 (823)
Q Consensus 558 ~a~~~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~ 622 (823)
+.++.+++++.+.++++.++++... . . ...+..+++..|+++..++++++.+.++...||.
T Consensus 504 ~~~~~L~~~l~~aLr~la~~l~~~~--~-~-~~~~~~~~~~~R~~l~~a~~~le~~~~rl~~Epq 564 (683)
T PRK11427 504 SEARTLPQKLAGALGMLSKVLRIPR--Q-Q-EVTALRTYLQIRIGLHAAFNACEEMCQRVALERQ 564 (683)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccc--c-c-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999988777531 1 0 0001122335678889999999999999999973
No 7
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=9.8e-18 Score=201.68 Aligned_cols=205 Identities=21% Similarity=0.269 Sum_probs=153.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 003403 405 PSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATN-RQATFKVANARAQGTAMGSVYGVICSFLLQKSVN 483 (823)
Q Consensus 405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps-~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~ 483 (823)
+++..++|++|+++++++++.+..++++++|||+++|+++|++|+ .|++.+++.+|+.||++|+++|.++.++.+....
T Consensus 350 ~~~~alr~a~R~ala~~~~~~~~~~~~w~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~~ 429 (674)
T COG1289 350 LNSPALRHALRTALALLLGYAFWLALGWPHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLIP 429 (674)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 678899999999999999999999999999999999999999999 9999999999999999999999998877655433
Q ss_pred H-HHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHH
Q 003403 484 F-RFLPLLPWIIFSSFL-RHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAAT 561 (823)
Q Consensus 484 ~-~~l~L~vwi~~~s~l-~~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~ 561 (823)
. ..+.++.-+++...+ ..++.|...+.+.. +.+...+ .+.++.++...|+.++.+|+++++++.+++||.+...
T Consensus 430 ~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~-v~~~~~l---~~~~~~~~~~~r~~d~~iG~lIa~~~a~~v~~~~~~~ 505 (674)
T COG1289 430 GLLLLLLLAALLFAAGIRLAKYRLATLGITLL-VLFLVGL---LGSNGPDYDLPRFLDTLLGSLIALALAFLVWPLWRPR 505 (674)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHH---cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 222222222222223 23444443222222 2222222 3457779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003403 562 LAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPN 622 (823)
Q Consensus 562 ~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~ 622 (823)
.+++...+.++..++.+..+. + +..... . +.......+.+......+..||.
T Consensus 506 ~l~~~~~~~l~~~~~~l~~~~--~---~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~p~ 557 (674)
T COG1289 506 RLRRALRRALRALRRDLASAL--S---REPTGR---E-RRFEHNADDALSQLLNLMASEPA 557 (674)
T ss_pred chhHHHHHHHHHHHHHHHHHH--h---cCCccc---h-hhhhhccHHHHHHHHHHHhcCCc
Confidence 999999999999999999884 2 111111 2 33344445556677777777875
No 8
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.85 E-value=1.9e-17 Score=198.38 Aligned_cols=503 Identities=16% Similarity=0.162 Sum_probs=284.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhccCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCC
Q 003403 18 RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPD 97 (823)
Q Consensus 18 ~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~ 97 (823)
++.+|+|+++||.++-.+..+-- +..|.|..+++++| +..+.|.++.-++.-+.||+.|++.+++...+.+..
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~------l~~p~WA~~tv~iV-~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~ 73 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQ------LPHPYWAAMTVFIV-SQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQS 73 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhC------CCCcHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35689999999999766644332 23556655555544 889999999999999999999999998887655433
Q ss_pred CCChhH-HHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEE--EEeeCCcccceeeehhhHHHHHHHHHHHHHHHhcC
Q 003403 98 RFTADV-AAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVG--TVVHGAKTGIVMHPIHVASSTALGALASVVAMLLP 174 (823)
Q Consensus 98 ~~~~~~-~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~--~~~~~~~t~~i~~p~~v~~~~~~G~~~~~~a~llP 174 (823)
+.-... ..+|+++.+++..+-.+.. .--+-|+..+...|+ .+.||.+ ....-+.=...+++|++++.++..+-
T Consensus 74 p~l~~~~lal~i~~c~~~~~~~~~~~--~y~~~lag~T~~iv~~~~~~~p~~--~f~~a~~R~~ei~iGi~~a~~v~~l~ 149 (650)
T PF04632_consen 74 PLLFLLALALWIGLCLYLSLLDRNFR--SYAFMLAGYTAAIVALPAVGNPEQ--VFDLALWRVLEILIGILCATLVSMLF 149 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhcccCccH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 322112 2255555555533222212 233334444433332 3335543 11112224467999999999998889
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhccCccccccccccCCCC
Q 003403 175 YPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPN 254 (823)
Q Consensus 175 ~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a~~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~~~~~ 254 (823)
+|+-+.+++++.+++..+++.+.+....+.--.++. ..+.+... +.+++...+...+|....+-....
T Consensus 150 ~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~--------~~~~l~~~----~~~l~~~~~~~~~e~~~~~~~~~~ 217 (650)
T PF04632_consen 150 FPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAA--------ERRRLARD----IAALESLLSHARYESPRLRRRRRR 217 (650)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccch--------HHHHHHHH----HHHHHHHHhhccccCchhHHHHHH
Confidence 999999999999999999999888776665544322 11122222 223344445555665432211122
Q ss_pred CCChHHHHHhhhccccchHHHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCcchhhhhHHhhhhh
Q 003403 255 YKDPREKLQELEIPIRGMELALTSCPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTAPETQKNCKDESLWS 334 (823)
Q Consensus 255 ~~~~~~~~~~L~~~Lrgm~~al~~~~~~p~~i~~~~~~~~l~~l~~~is~~~~~a~~~~~~~~~~~~e~~~~~~~~~l~~ 334 (823)
.......+.++...++.++..+......+ +....+ +.++.+++..... +- . .+.....+.+ +
T Consensus 218 ~~~l~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~~~-l~~~l~~la~~~~------~~-~---~~~~~~~l~~---~ 279 (650)
T PF04632_consen 218 LRALQARLLRLLALLRSLARRLAALPDAP----DAARLE-LAALLEELAAAAQ------RA-D---LDQAAAALRQ---R 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc----hhhHHH-HHHHHHHHhhccc------cc-c---cHHHHHHHHH---H
Confidence 22222233333333333333333222111 111111 4444444444100 00 0 0011111221 1
Q ss_pred hccCCC--C-CCCChhHHHHhHHHhhccCCCCCCcccccccccccccCCCCcccccchhhhcccccccccccCCChHHHH
Q 003403 335 LKAISS--T-EDVPASFFFYCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKCKLKWISSSLFLLPSLESLV 411 (823)
Q Consensus 335 ~~~~~~--~-~~~p~~fF~F~~~ll~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~ 411 (823)
.....+ . ....-......+....++........+.. .+.... +....+ .... .....++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~~~~l-----~~~~~~---~~~~~~---~~~~-------d~~~A~~ 341 (650)
T PF04632_consen 280 IAALRPAASDDSDWQRALLARLADLLRDLIQALRSLRAL-----RRPIPA---RRPFRF---PLHR-------DWPLALR 341 (650)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHhHHHHHHHHHhh-----hccccc---cccccc---cccc-------chHHHHH
Confidence 111111 0 00000111111111111111100000000 000000 000000 1111 2356789
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhh--ccChhHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhch--hhHHH
Q 003403 412 FALKCSLSLGLAVILGLMYNKENGYWSGLTIAISF--ATNRQATFKVANARAQGTAMGSVYGVICSF-LLQKS--VNFRF 486 (823)
Q Consensus 412 ~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~--qps~GaT~~k~~~Ri~GTvlGav~g~~~~~-l~~~~--p~~~~ 486 (823)
+++|+++++++++++-...|++.|.-+++++.|++ ..+.+....+...++.|+++|+++|+++.+ +.|+. .....
T Consensus 342 ~alra~la~~~~~l~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~f~~L~ 421 (650)
T PF04632_consen 342 NALRAFLAILIAGLFWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLDGFPLLA 421 (650)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHH
Confidence 99999999999999999999999999998888887 788889999999999999999999998877 44443 22334
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHH
Q 003403 487 LPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRK-NYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKA 565 (823)
Q Consensus 487 l~L~vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~-~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~~ 565 (823)
+++++.+++..+......+...|.-. .+.|+...+.. .+...+....++...+++|++++.++..+++|.++....++
T Consensus 422 l~l~~~l~~~~~~~~~p~~~~~g~~~-~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~li~p~~~~~~~rr 500 (650)
T PF04632_consen 422 LVLAPFLFLGGLLMARPRTAYIGLGF-AVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFRLIRPFSPEWRRRR 500 (650)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHH-HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 44444444445544333344333322 22344444332 23556688899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 003403 566 QLAQSLQALQDGIKD 580 (823)
Q Consensus 566 ~l~~~L~~l~~~l~~ 580 (823)
.+....+++.+....
T Consensus 501 l~~~~~~~l~~~~~~ 515 (650)
T PF04632_consen 501 LLRALRRDLARLARG 515 (650)
T ss_pred HHHHHHHHHHHHhhc
Confidence 888888887765543
No 9
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.82 E-value=2.1e-18 Score=201.87 Aligned_cols=166 Identities=15% Similarity=0.082 Sum_probs=145.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003403 405 PSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNF 484 (823)
Q Consensus 405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~ 484 (823)
|++..+. +|++++++++++++..+++|+++|++.++++|+||..|.+..|+++|++||++|+.++++++.++.+.|.+
T Consensus 27 P~r~~~~--~r~~~a~~L~l~i~~~l~~P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v~~P~l 104 (683)
T PRK11427 27 PGRVPQT--LQLWVGCLLVILISMTFEIPFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGYPLI 104 (683)
T ss_pred CChHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 4444444 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cch-hhH--HHHHHHHHH--HHHHHhccCCCCChHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 003403 485 RFLPLLPWIIFSSFLR-HSR-MYE--EAGAISAVI--GALLILGRKNYGTPSEFAIARITE-----ASLGLICFIIVEIL 553 (823)
Q Consensus 485 ~~l~L~vwi~~~s~l~-~~~-~Y~--lag~~~alI--~~~~vlg~~~~~~~~~~A~~Rv~e-----i~IGivia~~V~~l 553 (823)
..+++++|++.+.|+. .+| .|. ++||+ ++| +|+.+. +..-.+.|.++ |.+||+|+++|+.+
T Consensus 105 ~~l~ialw~~~~lyl~r~~rl~yvf~lag~t-aii~~~f~~v~-------~~~E~~~R~~e~~w~~i~~gi~ca~lV~~l 176 (683)
T PRK11427 105 RLIIAGPILMGCMFLMRTHRLGLVFFAVAIV-AIYGQTFPAML-------DYPEVVVRLTLWCIVVGLYPTLLMTLIGVL 176 (683)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HHHHhhccccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999888886 455 565 88888 466 444332 12333899999 99999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHH
Q 003403 554 FQPARAATLAKAQLAQSLQALQDGIKD 580 (823)
Q Consensus 554 v~P~~a~~~l~~~l~~~L~~l~~~l~~ 580 (823)
+||++.++.++.++++++++..+++.+
T Consensus 177 ~~P~~~~~~l~~~l~~~l~~a~~~l~~ 203 (683)
T PRK11427 177 WFPSRAINQMHQALNDRLDDAISHLTD 203 (683)
T ss_pred hCcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999988877664
No 10
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.68 E-value=7.8e-15 Score=176.69 Aligned_cols=175 Identities=22% Similarity=0.267 Sum_probs=151.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 003403 405 PSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNF 484 (823)
Q Consensus 405 ~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~ 484 (823)
+.+..|+|++|+.+|+++++++++.+++++|+|+++|++||++|..|+.++|+++|++||++|..+++++..++.+.|++
T Consensus 6 ~~~~~~~~~lr~~~a~~la~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~~p~~ 85 (674)
T COG1289 6 PTNADWRYALRTFLAACLALALAFLLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQEPWL 85 (674)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHccCcHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999888889998
Q ss_pred HHHHHHHHHHHHHHH----hcchhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCch
Q 003403 485 RFLPLLPWIIFSSFL----RHSRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPAR 558 (823)
Q Consensus 485 ~~l~L~vwi~~~s~l----~~~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~ 558 (823)
..+++.+|+++++.. +....|+ ++|||..+++ +... ...|...++.++.|+.++.+|++|+-.+....+|.+
T Consensus 86 f~~~~~~~~~l~~~~~~~~~~~~~~a~~la~yT~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (674)
T COG1289 86 FLLLLTLWLGLCTAIGSLYRTIASYAFVLAGYTALIIG-PAPA-IPEPELLFDGAVWRVVEILLGILCAPVVPLLESPSR 163 (674)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc-cccc-cccHHHHHHHHHHHHHHHHHHHHHhccchHhhhHHH
Confidence 889999999766543 3445555 9999998876 3212 114455889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003403 559 AATLAKAQLAQSLQALQDGIKDI 581 (823)
Q Consensus 559 a~~~l~~~l~~~L~~l~~~l~~~ 581 (823)
....+.+.++...+....+....
T Consensus 164 ~~~~L~~~l~~~~~~~~~~~~~~ 186 (674)
T COG1289 164 LYQALANYLEAKSRLFAQLLLAA 186 (674)
T ss_pred HHHHHHHHHHHHHhccchhhhhh
Confidence 99999999888887766666554
No 11
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.65 E-value=9.3e-14 Score=152.14 Aligned_cols=199 Identities=18% Similarity=0.167 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 003403 408 ESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFL 487 (823)
Q Consensus 408 ~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l 487 (823)
......+|+++|+++|++++.+++++.|..|++|+++.++|+...+++++.+|+.|+++|+++|+++..++++.|....+
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v 87 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGV 87 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHH
Q 003403 488 PLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQL 567 (823)
Q Consensus 488 ~L~vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~~~l 567 (823)
.+.+.+..+..+...-.-. +..++...++.+. .++. .....|+.++++|+.++++|+.+++|.. ..++...
T Consensus 88 ~~~i~i~~~~~~~~~~g~~----~~~~~~~~ii~~~--~~~~-~~~~~r~l~~~vG~~~a~lvn~~~~~~~--~~~~~~~ 158 (332)
T COG4129 88 VLLIIIPLLVLLKLENGVV----PITVGVLHILVAA--MIPL-FLIFNRFLLVFVGVGVAFLVNLVMPPPD--YELKLYR 158 (332)
T ss_pred HHHHHHHHHHHHhcccchh----HHHHHHHHHHHHc--ccch-hHHHHHHHHHHHHHHHHHHHhhhcCCch--HHHHHHH
Confidence 6666555555554211111 1111111122221 1222 3334499999999999999999999876 4444444
Q ss_pred HHHHHHHHHHHHHHh--hhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 003403 568 AQSLQALQDGIKDIV--LFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEME 620 (823)
Q Consensus 568 ~~~L~~l~~~l~~~~--L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~E 620 (823)
..........+.... +.+ . ++...+.....+.+.+.++.++....+.|
T Consensus 159 ~kv~~~~~~il~~~~~~l~~-~----~~~~~~~~~~~l~~~~~~~~~l~~~~~~e 208 (332)
T COG4129 159 AKVEAILASILWEVASYLRD-T----ESAELDKDLEALLRLLIKLAKLIAYRREE 208 (332)
T ss_pred HHHHHHHHHHHHHHHHHHhc-C----CccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444443332 211 1 11222333445555566666666665556
No 12
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.56 E-value=8.7e-14 Score=132.17 Aligned_cols=126 Identities=21% Similarity=0.393 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Q 003403 422 LAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLRH 501 (823)
Q Consensus 422 LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~~ 501 (823)
+|.+++.+++.+|++|+++|++++++|+.|++.+++.+|++||++|+++|.++..+.++. ....+.+.++.+...++.
T Consensus 1 ~a~~i~~~~~~~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 78 (128)
T PF13515_consen 1 LAFFIAQWLGLPHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGN-YVLILIVFLLMFLIFYFL- 78 (128)
T ss_pred ChhhHHHHHcCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHH-
Confidence 367888999999999999999999999999999999999999999999999999887764 333333333333333333
Q ss_pred chhhH--HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 003403 502 SRMYE--EAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIV 550 (823)
Q Consensus 502 ~~~Y~--lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V 550 (823)
.+.|. ..+.+..++...... +.+++++.+.+..|+.++++|+++++++
T Consensus 79 ~~~y~~~~~~~t~~~v~~~~~~-~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 79 SKNYAIAQIFITVMVVLLFSLI-HPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred hccHHHHHHHHHHHHHHHHHHH-ccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 34444 333333332222221 1234667899999999999999999874
No 13
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.54 E-value=2.8e-13 Score=131.91 Aligned_cols=137 Identities=15% Similarity=0.226 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 003403 411 VFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLL 490 (823)
Q Consensus 411 ~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~ 490 (823)
...+|+++|+.++++++.+++.++|++|.+++++.+||+...|++.+.+|+.|+++|+++|+++..+++.+|....+.+.
T Consensus 5 ~r~iKtaiA~~la~~ia~~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~~l~v~ 84 (141)
T PF06081_consen 5 MRTIKTAIAAFLAILIAQLLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSIGLAVI 84 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999888887776666665
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003403 491 PWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILF 554 (823)
Q Consensus 491 vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv 554 (823)
+.+..+..++.......+..+. ..+.. .++..+..+.+|+.++++|+.++++||+++
T Consensus 85 i~i~~~~~l~~~~~~~~a~v~~----~~i~~---~~~~~~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 85 ITIPICNWLKLGEGIIVAAVTF----VHILL---SGSDSFSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHhCCCCeehHHHHHH----HHHHH---cCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555555666443222222221 11222 233455669999999999999999999864
No 14
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=99.52 E-value=2.7e-14 Score=165.93 Aligned_cols=287 Identities=15% Similarity=0.119 Sum_probs=194.6
Q ss_pred cccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHH
Q 003403 393 KLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNK-----ENGYWSGLTIAISFATNRQATFKVANARAQGTAMG 467 (823)
Q Consensus 393 ~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l-----~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlG 467 (823)
+..|. .-..++++..|++|+++|..|..++.+.=.. .+..|+++|+++|+.+++|+|+.|+++|.+||+.+
T Consensus 80 ~~~~~----~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~tL~a 155 (625)
T KOG4711|consen 80 RNLWE----VGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVGTLSA 155 (625)
T ss_pred hhhhh----cCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHHHhhh
Confidence 35666 2336889999999999999999877553221 67889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc---hhhHHHHHHHHHH--HHHHHHh-----cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHH
Q 003403 468 SVYGVICSFLLQK---SVNFRFLPLLPWI--IFSSFLR-----HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARI 537 (823)
Q Consensus 468 av~g~~~~~l~~~---~p~~~~l~L~vwi--~~~s~l~-----~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv 537 (823)
+.+|+.+..+... .....+++..+++ ...+|++ .++.|+...+...+. +..+.+- ..+...+.|..|+
T Consensus 156 g~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~y~y~~lIf~ltf~-l~~vs~~-r~~~~~~~a~~Rl 233 (625)
T KOG4711|consen 156 GGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKAYEYGFLIFILTFC-LVEVSGY-RSDYFLELALQRL 233 (625)
T ss_pred hhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhccchhhhHHHHHhh-hheeccc-chhHHHHHHHHHH
Confidence 9999866654322 2233444444554 2344544 235676322222111 1122221 1256779999999
Q ss_pred HHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHH------HhhhhhhcCCC------Ch----------hH
Q 003403 538 TEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKD------IVLFADQKGKA------TP----------TA 595 (823)
Q Consensus 538 ~ei~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~------~~L~~~~~~~~------~~----------~~ 595 (823)
..|.+|..++.+|+.++||.|++..+++..+..+...+..++. .. .+..... +. +.
T Consensus 234 ~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~--~~~y~~~~~i~~~s~~~~~~s~~~~~~ 311 (625)
T KOG4711|consen 234 LLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCF--NGEYFCVEKIEILSIPTFYKSAAWYPL 311 (625)
T ss_pred HHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhh--cchheeehhhhhcchhhhhhhcchhhh
Confidence 9999999999999999999999999999998888888887774 11 1111100 00 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhh
Q 003403 596 LRDKQKRLKSHINELDKFIAEAEMEPNF---WFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQ 672 (823)
Q Consensus 596 ~~~~~~~L~~~L~~L~~ll~~A~~EP~~---w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~ 672 (823)
++. +.........++.+...|.|||++ |...||+.+|.++...+|.+.-.+.++..++..= .+ .+ +++.
T Consensus 312 ~~G-y~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~---~q---ap-~~~~ 383 (625)
T KOG4711|consen 312 YNG-YWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSE---IQ---AP-RDLR 383 (625)
T ss_pred hcc-hhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhccccccc---cc---Cc-HHHH
Confidence 111 233344446688999999999998 4568999999999999998887777665554221 11 11 2233
Q ss_pred hhhHhHHHHHHHHHhhhhhhhHH
Q 003403 673 EPINDDLELFKEKVGHSLKCFEE 695 (823)
Q Consensus 673 ~~v~~~~~~~~~~v~~~l~~l~~ 695 (823)
...+..|+....-++..++.+.+
T Consensus 384 ~~~~~~l~rva~e~~kvl~~~~~ 406 (625)
T KOG4711|consen 384 NKFRLTLRRVAIEISKVLRPFRA 406 (625)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555666555556666666543
No 15
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.35 E-value=5.4e-08 Score=115.72 Aligned_cols=478 Identities=13% Similarity=0.102 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhc---------cCchhHHHHHHHHHHHHHHHHhHhHHH
Q 003403 19 LGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILS---------DATLGDTLRGCWHALYATIQIMIPSIL 89 (823)
Q Consensus 19 l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s---------~~t~G~~l~~~~~~l~~t~~~~~~s~l 89 (823)
+-+|+|+++|+.++=.+..+- .+..|-|..++++ |++ ...-|..+.-.+.-+.||+.|++.+++
T Consensus 9 ~~falk~~lA~~LAL~ia~~l------~L~~P~WA~~Tv~-iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~ 81 (652)
T PRK10631 9 LRFAVKLAFAIVLALFVGFHF------QLETPRWAVLTAA-IVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALV 81 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHC------CCCCccHHHHHHH-HHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888777754432211 2335666666644 444 457788888888889999999888888
Q ss_pred HHhhcCCCCCChhH-HHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEE--EEeeCCcccceee-ehhhHHHHHHHHH
Q 003403 90 CLWLVGPDRFTADV-AAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVG--TVVHGAKTGIVMH-PIHVASSTALGAL 165 (823)
Q Consensus 90 ~l~~ig~~~~~~~~-~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~--~~~~~~~t~~i~~-p~~v~~~~~~G~~ 165 (823)
..+..+..+.--.. ..+|+++.+++..+-.. +-.--+.|+..+...|+ ..-||.. ++. =+.=..-+++|++
T Consensus 82 l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~--~~sY~~~LaGyTa~iI~~~~~~~p~~---~f~~A~~R~~Ei~iGi~ 156 (652)
T PRK10631 82 IIIATIRAPLLMILLCCIWAGFCTWISSLVRV--ENSYAWGLAGYTALIIVITIQPEPLL---TPQFAVERCSEIVIGIV 156 (652)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhccCCchH---HHHHHHHHHHHHHHHHH
Confidence 87765433321111 22444454444332222 11334555554443332 2233432 211 0011234899999
Q ss_pred HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhccCccccc
Q 003403 166 ASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWER 245 (823)
Q Consensus 166 ~~~~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a~~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~ 245 (823)
++.++..+.+|+.+...+++..++...++.+.+...... .++.+ ..-.+.+.+.+. -.++.......||.
T Consensus 157 ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~---~~~~~--~~~~~~~L~~di-----~~le~lr~~~~~e~ 226 (652)
T PRK10631 157 CAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH---GDKEE--VDKAWGDLVRRT-----TALNGMRSNLMMES 226 (652)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc---Cccch--hhHHHHHHHHHH-----HHHHHHHHhhccCC
Confidence 999998999999999999999999998888777644322 12111 001222222221 13344445555664
Q ss_pred cccccCCCCCCChHHHHHhhhccccc-hHHHHhh----CCCCCcccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 003403 246 PQIRFLKPNYKDPREKLQELEIPIRG-MELALTS----CPSFPVGMIDEDLRDVLQSLKAEIGLKLEQAKCYASFDATTA 320 (823)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~L~~~Lrg-m~~al~~----~~~~p~~i~~~~~~~~l~~l~~~is~~~~~a~~~~~~~~~~~ 320 (823)
.- .....+.+.+|...+-. ...|++. .+ .| +...+.+..+.++....
T Consensus 227 ~~-------~r~~~~~l~~L~~~~l~l~~~al~~~l~~~~-~~-----~~~~~~l~~ll~~~~~~--------------- 278 (652)
T PRK10631 227 SR-------WQRANRRLKALNTLSLTLITQACETYLIQNT-RP-----ELITDTFRELFDTPVET--------------- 278 (652)
T ss_pred cc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-----ccchHHHHHHHhccccc---------------
Confidence 32 22222333333211111 1112211 11 01 11111122222211000
Q ss_pred cchhhhhHHhhhhhhccCCCCCCCCh--hHHH------HhHHHhhccCCCCCCcccccccccccccCCCCcccccchhhh
Q 003403 321 PETQKNCKDESLWSLKAISSTEDVPA--SFFF------YCIKLLQDGLPVAPNAEFVVNETRETHTEGSSESQNQNKFKC 392 (823)
Q Consensus 321 ~e~~~~~~~~~l~~~~~~~~~~~~p~--~fF~------F~~~ll~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 392 (823)
+.+..+.+........+.. .+++|. -.|. ++......+.......... .. ....+.
T Consensus 279 ~~~~~~~l~~lr~~~~~~~-~~~~~~~l~~~~~~~~r~~~L~~~~~~~~~~~~~~~~------~~-~~~~~~-------- 342 (652)
T PRK10631 279 PQDVHKQLKRLRRVIAWTG-ERETPVTIYSWVGAATRYLLLKKGVISNTKISATEEE------IL-QGEPVV-------- 342 (652)
T ss_pred hhhHHHHHHHHHHHhhhcc-ccccccchhHHHHHHHHHHHHHHHHhhhhhhhhhhhh------hc-cccccc--------
Confidence 0111111111111111100 111111 1111 1111111111100000000 00 000000
Q ss_pred cccccccccccCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhc--cChhHHHHHHHHHHHHHHHHHHH
Q 003403 393 KLKWISSSLFLLPSLESLVFALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFA--TNRQATFKVANARAQGTAMGSVY 470 (823)
Q Consensus 393 ~~~w~~~~l~~~~~~~~l~~AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~q--ps~GaT~~k~~~Ri~GTvlGav~ 470 (823)
+..|. ...+....++|++++++++..+=.+-|++.|.-+++-+.|++- .+...-...+.+=+.||++|..+
T Consensus 343 ~~~~~-------~~h~A~~~glRa~~ai~~~~~fWI~TgW~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~ 415 (652)
T PRK10631 343 KVESA-------ERHHAMINGWRTTLATALGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPL 415 (652)
T ss_pred ccccc-------hHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 01111 2234678889999999999998888999999998865555442 22223344455556788888888
Q ss_pred HHHHHHH-hhch---hhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHHHHHH
Q 003403 471 GVICSFL-LQKS---VNFRFLPLLPWIIFSSFLRHSRMYEEAGAISAVIGALLILGRKNY-GTPSEFAIARITEASLGLI 545 (823)
Q Consensus 471 g~~~~~l-~~~~---p~~~~l~L~vwi~~~s~l~~~~~Y~lag~~~alI~~~~vlg~~~~-~~~~~~A~~Rv~ei~IGiv 545 (823)
|+++.++ .|+. .....+++.+.++++..+...+.++-.|+...++ .+++..++ .-.+...++.-...++|++
T Consensus 416 a~l~~f~vLP~i~~~f~lL~laLap~~~~~g~~~~~~~~~~lg~~i~f~---~~l~l~n~~~~d~~~FlN~alA~v~Gi~ 492 (652)
T PRK10631 416 GALYFMVIIPNTQQSMLLLCISLGVLGFFIGIEVQKRRLGSLGALASTI---NILVLDNPMTFHFSQFLDSALGQIVGCF 492 (652)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HHhccCCCCCcCHHHHHHHHHHHHHHHH
Confidence 7766653 3442 2333444444444444444333444233333222 33332232 4456777888889999999
Q ss_pred HHHHHHHHccCchhHHHHHHHHHHHHH
Q 003403 546 CFIIVEILFQPARAATLAKAQLAQSLQ 572 (823)
Q Consensus 546 ia~~V~~lv~P~~a~~~l~~~l~~~L~ 572 (823)
++.++..++.|.......++-+.+...
T Consensus 493 ~A~l~f~lirp~~~~r~~rrL~~~~~~ 519 (652)
T PRK10631 493 LALIVILLVRDNSRDRTGRVLLNQFVS 519 (652)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999888888666655555544433
No 16
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=99.25 E-value=8.3e-11 Score=132.33 Aligned_cols=254 Identities=17% Similarity=0.174 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhccCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcC--
Q 003403 18 RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVG-- 95 (823)
Q Consensus 18 ~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig-- 95 (823)
|+-+++|.++|.+|++.....+|.+ +.+.=.+..=+.|++++=..|+|.++.-+.....||+.+.+++++..++..
T Consensus 10 r~~~~lkvglal~lvsl~~~~~~~~--~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~ 87 (406)
T PF11744_consen 10 RVIHSLKVGLALTLVSLLYFVGPLY--DGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLS 87 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhh--hhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788999999999999887788754 222223545555666666899999999999999999999888888877641
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccCCchhhhhhhccc------eeeeEEEEEeeCCcccceeeehh-hHHHHHHHHHHHH
Q 003403 96 PDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQ------IVIVCVGTVVHGAKTGIVMHPIH-VASSTALGALASV 168 (823)
Q Consensus 96 ~~~~~~~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~------~~i~~v~~~~~~~~t~~i~~p~~-v~~~~~~G~~~~~ 168 (823)
++....-+....+++.+++..|..+.|.+.+|+..|. ..++-+..| +++..++-.+ =....++|++.|+
T Consensus 88 g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~y----r~~~~~~~A~~R~~~I~iGv~i~l 163 (406)
T PF11744_consen 88 GDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGY----RTDEFLMLAVWRLLTIVIGVAICL 163 (406)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecC----CcchHHHHHHHHHHHHHHHHHHHH
Confidence 1111111333555555565666666666666655433 334444444 3333333222 2344699999999
Q ss_pred HHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh-hhhHHHHHHHHH---HHHHHHHHHHhhccCcccc
Q 003403 169 VAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAA-LDSISEAKSLFK---AGAKQLLSIKDKQEGMLWE 244 (823)
Q Consensus 169 ~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a-~~~i~~~k~l~~---a~~~~l~~i~~~~~~~~wE 244 (823)
+..++-||.+|..++++......+.+.+.+...++.|+..+..+- ..--..-+.+.+ +...--++.+++...+.||
T Consensus 164 ~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WE 243 (406)
T PF11744_consen 164 LVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWE 243 (406)
T ss_pred HHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhc
Confidence 999999999999999999999999999999999999997543320 000000001111 1111124556677889999
Q ss_pred ccccccC-CCCCCChHHHHHhhhccccchHHHHhh
Q 003403 245 RPQIRFL-KPNYKDPREKLQELEIPIRGMELALTS 278 (823)
Q Consensus 245 ~~~~~~~-~~~~~~~~~~~~~L~~~Lrgm~~al~~ 278 (823)
+.--+|. +.-|++|.|. +.+..+-.-+=.|+..
T Consensus 244 P~HG~f~f~~Pw~~Y~ki-g~~lR~cay~v~AL~g 277 (406)
T PF11744_consen 244 PPHGRFRFRHPWKQYLKI-GALLRHCAYCVEALHG 277 (406)
T ss_pred ccccCCccCCcHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 8864444 4445666553 3333333333344444
No 17
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.19 E-value=1.5e-07 Score=109.00 Aligned_cols=249 Identities=14% Similarity=0.187 Sum_probs=170.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH------HhcCCCCcHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003403 405 PSLESLVFALKCSLSLGLAVILG------LMYNKENGYWSGLTIAISF-ATNRQATFKVANARAQGTAMGSVYGVICSFL 477 (823)
Q Consensus 405 ~~~~~l~~AlK~slA~~LA~~ia------~~~~l~~p~WA~lTv~IV~-qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l 477 (823)
.|.+.++.-+|++++..+++.+. .++| ..+|.+.+..+++. .-.+|..+...+.=++|+.+|..+|++..+.
T Consensus 11 ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g-~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~ 89 (459)
T PF10337_consen 11 LDRRSLKIMFKCWIAPWIALILCQIPPVARWLG-TAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYI 89 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhc-chhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999998764 3577 78888886555543 3467889999999999999999999887764
Q ss_pred hh----c----------------h----hhH---------------HHHHHHHHHH----HHHHHh--cchhhHHHHHHH
Q 003403 478 LQ----K----------------S----VNF---------------RFLPLLPWII----FSSFLR--HSRMYEEAGAIS 512 (823)
Q Consensus 478 ~~----~----------------~----p~~---------------~~l~L~vwi~----~~s~l~--~~~~Y~lag~~~ 512 (823)
.. + . +.. ...+.++|++ +..++| .|+ +... .+.
T Consensus 90 a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~-~~~~-~I~ 167 (459)
T PF10337_consen 90 AVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPK-LNFP-VIF 167 (459)
T ss_pred HHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcc-hHHH-HHH
Confidence 42 1 0 110 0144455553 334455 333 3321 222
Q ss_pred HHHHHH--HHhccCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHh--hhhhh
Q 003403 513 AVIGAL--LILGRKNYG-TPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIV--LFADQ 587 (823)
Q Consensus 513 alI~~~--~vlg~~~~~-~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~--L~~~~ 587 (823)
..|... ...|...|. ....++..=+.-..+|+++++++++++||...+..+.+.+.+.++.+.+.++... +.+..
T Consensus 168 ~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~ 247 (459)
T PF10337_consen 168 GSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSE 247 (459)
T ss_pred HHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 222221 122222333 3334444444557799999999999999999999999998888888887776542 21111
Q ss_pred cCCCCh----hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003403 588 KGKATP----TALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENILASLSRMADLLLFVAYKTEFLS 658 (823)
Q Consensus 588 ~~~~~~----~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~ 658 (823)
...+.. ..+++.+.++.+.+.+++..+.++..| +..++++.+.++.+...++++.-.+.++.+..+.+.
T Consensus 248 ~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~E--is~grl~~~Dl~~i~~~lr~l~~~~~gL~~~~~~~~ 320 (459)
T PF10337_consen 248 PSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLE--ISYGRLSPDDLKPIFSLLRSLMIPLSGLSSFCDLFQ 320 (459)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 456677888999999999999999999 445789999999999999999998888877544443
No 18
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=98.52 E-value=1.4e-05 Score=84.28 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=129.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHh--hhhhhcCCC---Chh--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 003403 555 QPARAATLAKAQLAQSLQALQDGIKDIV--LFADQKGKA---TPT--ALRDKQKRLKSHINELDKFIAEAEMEPNFWFLP 627 (823)
Q Consensus 555 ~P~~a~~~l~~~l~~~L~~l~~~l~~~~--L~~~~~~~~---~~~--~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~p 627 (823)
.|.+++..+|+.+++++..+++++..+. .......+. ... ...+...++...+..++.++..+++||++ ++|
T Consensus 2 ~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l-~G~ 80 (229)
T PF10334_consen 2 RPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSL-KGR 80 (229)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC-CCC
Confidence 5899999999999999999999998874 101000111 111 23345677889999999999999999985 899
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchH-HhhhhhHhHHHHHHHHHhhhhhhhHHHHHHhhHHhhh
Q 003403 628 FHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWK-QIQEPINDDLELFKEKVGHSLKCFEEVILIKSLAVLA 706 (823)
Q Consensus 628 f~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~-~l~~~v~~~~~~~~~~v~~~l~~l~~~~~~~s~~~l~ 706 (823)
||.+.|+++...++++.+.+..+......+. +..|+ .+...+...- .+++++.+--+ ..+.
T Consensus 81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~------~~~~~~~l~~~~~~~~---~~~~~~i~~vl---------~~ls 142 (229)
T PF10334_consen 81 FPKETYQRLLELCQNILDLLSLLSYVSTRLE------PSEWRERLLRRTGWLR---PELIGDIFSVL---------YMLS 142 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------hhhHHHHHHHHHHhhc---hHHHHHHHHHH---------HHHH
Confidence 9999999999999999999988766555441 23343 2222222111 13344433222 1222
Q ss_pred hhhhhcccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhc---------CCcccccccccchhhhHHH
Q 003403 707 PERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSIN---------GYDGEEKHLSQTVLVLNGL 777 (823)
Q Consensus 707 ~~~~~~~~~~dle~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~l 777 (823)
++ ++.|.+-++-. + +| ++.-++.+.+......+ ..-+.+.+.+++...+++-
T Consensus 143 ~a---------l~~g~pLP~~l-p-~p--------l~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~y~~~~v~ 203 (229)
T PF10334_consen 143 SA---------LRTGQPLPPYL-P-AP--------LVRRHFDHLRKLWQLDRSSDDEVELPDILSLEHLRDEDYRRFCVA 203 (229)
T ss_pred HH---------HhcCCCCCccC-C-cc--------hHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHhCcChHHHHHH
Confidence 22 22222222111 0 11 11112222221111111 1122345678888888899
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHh
Q 003403 778 GFCISSLMKETTKIEKEIKELIK 800 (823)
Q Consensus 778 ~F~l~~l~~e~~~l~~~v~el~~ 800 (823)
..+...+..++++|...||||++
T Consensus 204 ~~~~~~i~~~lD~lv~~vK~lvG 226 (229)
T PF10334_consen 204 VSAASSILERLDELVIVVKELVG 226 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999974
No 19
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=98.49 E-value=8.4e-05 Score=80.93 Aligned_cols=151 Identities=14% Similarity=0.160 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 003403 462 QGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEA 540 (823)
Q Consensus 462 ~GTvlGav~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei 540 (823)
+.|++|..++.+++.+....|++..++++++.++++++. ....|+..|+.+.+++...+. .+... ..++.+..-+
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~v~t~~---~~~~~-~~~~~~~~l~ 78 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGMLGVYGPRAATIGFATLLVAVYTMA---GPSPG-PEALEHALLF 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh---CCCcc-hHHHHHHHHH
Confidence 455666645444455455567777777777777666665 344455556555444332222 23222 2778888999
Q ss_pred HHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhcCCCChhH----HHHHHHHHHHHHHHHHHHHH
Q 003403 541 SLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDIV-LFADQKGKATPTA----LRDKQKRLKSHINELDKFIA 615 (823)
Q Consensus 541 ~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~~-L~~~~~~~~~~~~----~~~~~~~L~~~L~~L~~ll~ 615 (823)
++|.+++.+.++++||-++....++.+++++..++++++.-. +..++ .+.+.+. +...+.++...+...++.+-
T Consensus 79 ~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~~p~-~~~~~~~~~~~l~~~q~~v~~~~~~~R~~l~ 157 (284)
T PF12805_consen 79 LAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAKARFFDPD-QHDDDEQLRIELAQQQIKVNEALEQARELLL 157 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999853 11111 1111111 23446677888888888877
Q ss_pred Hh
Q 003403 616 EA 617 (823)
Q Consensus 616 ~A 617 (823)
..
T Consensus 158 ~~ 159 (284)
T PF12805_consen 158 RR 159 (284)
T ss_pred Hh
Confidence 64
No 20
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.49 E-value=0.00024 Score=86.11 Aligned_cols=171 Identities=11% Similarity=0.010 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 003403 407 LESLVFALKCSLSLGLAVILGLMYNKENG-YWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFR 485 (823)
Q Consensus 407 ~~~l~~AlK~slA~~LA~~ia~~~~l~~p-~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~ 485 (823)
+..+.+++|+++|+..+.++.+++|..+- .=..+.++...-....+.++.-+.+++-|++...++.+.+.+....|+++
T Consensus 5 ~~~~~~~lri~ia~~~~~~~~~~~~~~~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf 84 (704)
T TIGR01666 5 NAKVIYTIPIFIALNGAAVGIWFFDISSQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLF 84 (704)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 56788999999999999898888885332 22234455545556667777778888888888888877776666667776
Q ss_pred HHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHH
Q 003403 486 FLPLLPWIIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAK 564 (823)
Q Consensus 486 ~l~L~vwi~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~ 564 (823)
.+++++..+..+++. ....|+..++.+.+++.-.++|...+ ........-+++|.+++.+.++++|+-++..-++
T Consensus 85 ~~~l~~~tf~~~mlga~G~Rya~Iaf~tLliaiytmlg~~~~----~~w~~~pllll~GalwY~llsl~~~~l~p~rp~q 160 (704)
T TIGR01666 85 AVGLTVSTFGFIMLGAVGQRYATIAFGSLLVALYTMLGYIEV----NVWFIQPVMLLCGTLWYSVVTLIVHLFFPNRPVQ 160 (704)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 666554444344443 34446655555545444444443222 2334467888999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003403 565 AQLAQSLQALQDGIKDI 581 (823)
Q Consensus 565 ~~l~~~L~~l~~~l~~~ 581 (823)
+.+++++..++++++.-
T Consensus 161 ~~LA~~y~~La~yL~ak 177 (704)
T TIGR01666 161 ENLAKAFCQLAEYLETK 177 (704)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 21
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.38 E-value=0.00087 Score=81.51 Aligned_cols=171 Identities=11% Similarity=-0.040 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 003403 407 LESLVFALKCSLSLGLAVILGLMYNKENGY-WSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFR 485 (823)
Q Consensus 407 ~~~l~~AlK~slA~~LA~~ia~~~~l~~p~-WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~ 485 (823)
+..+.+++|+++|+..+.++.+++|..... =+.+.++...-....+.++--+.+++-|++...++.+.+.+....|+++
T Consensus 5 ~~~~~~~l~v~ia~~~~~~~~~~~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~ 84 (701)
T TIGR01667 5 NQKLVYCLPVFIALMGAELRIWWFGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLF 84 (701)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 567889999999999998888888853322 2223333344455566666666666666666666666665555566666
Q ss_pred HHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHH
Q 003403 486 FLPLLPWIIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAK 564 (823)
Q Consensus 486 ~l~L~vwi~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~ 564 (823)
.+++++..+..+++. ....|+..++-+.+++.-.++|...+ ..-.....-+++|.+++.+.++++++-++..-++
T Consensus 85 ~~~l~~~tf~~~mlga~G~r~~~I~f~~L~~aiytml~~~~~----~~w~~~pllll~GalwY~l~sll~~~l~p~rp~q 160 (701)
T TIGR01667 85 PFLLTLLTFGFILLGALGQRYATIAFASLLAAIYTMLGAGEV----PVWFIEPLLILAGTLWYGLLTLIWFLLFPNQPLQ 160 (701)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHcCcccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 555544433333333 34455533333333332233432211 1223355568889999999999988888888889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003403 565 AQLAQSLQALQDGIKDI 581 (823)
Q Consensus 565 ~~l~~~L~~l~~~l~~~ 581 (823)
+.+++++..++++++.-
T Consensus 161 ~~La~~y~~La~yL~aK 177 (701)
T TIGR01667 161 ESLSRLYRELAEYLEAK 177 (701)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998875
No 22
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=97.59 E-value=0.00041 Score=80.67 Aligned_cols=258 Identities=16% Similarity=0.097 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhc--cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhc-
Q 003403 18 RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILS--DATLGDTLRGCWHALYATIQIMIPSILCLWLV- 94 (823)
Q Consensus 18 ~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s--~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~i- 94 (823)
.+.--+|..++..|+-++ ...| +..+|++ ++-|++.++.|+. ...+|..++.....+.|+..|.+.++|..|..
T Consensus 15 ~~k~~~k~~i~~~i~~~l-~~i~-~~~~~~g-~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~~l~~~~a~ 91 (459)
T PF10337_consen 15 SLKIMFKCWIAPWIALIL-CQIP-PVARWLG-TAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWGLLAMYIAV 91 (459)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhch-HHHHHhc-chhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666665554333 4445 4567776 4555555555554 77999999999999999888888888887632
Q ss_pred --CCC----------------C------------------CChh---HHHHHHHHHHHHHhcccCCchh-hhhhhcccee
Q 003403 95 --GPD----------------R------------------FTAD---VAAVVVTLMSFVVALPESTALM-AKRIAFGQIV 134 (823)
Q Consensus 95 --g~~----------------~------------------~~~~---~~l~~v~~~t~vv~~p~~t~~v-~kr~al~~~~ 134 (823)
.++ . +++. +..+|.+++.++.++-.+.+|- .==.-++.|+
T Consensus 92 ~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~~~~~~I~~~I~ 171 (459)
T PF10337_consen 92 AARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPKLNFPVIFGSIF 171 (459)
T ss_pred HHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 233 1 1111 2334555555555555555532 1111122232
Q ss_pred eeEEEEEeeCCcc-cceeeehhhHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 003403 135 IVCVGTVVHGAKT-GIVMHPIHVASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAA 213 (823)
Q Consensus 135 i~~v~~~~~~~~t-~~i~~p~~v~~~~~~G~~~~~~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a 213 (823)
+....++----.| .....+..+..-.++|+..++++.++-||..+...+-+.+..+.+-+.+.++.-.+.|-..+...-
T Consensus 172 ~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~ 251 (459)
T PF10337_consen 172 VDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDE 251 (459)
T ss_pred HHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 2111111100011 122222234556788888899999999999999999999999999999999998887765433211
Q ss_pred h--hhHHHHHHHHHHHHHHHHHHHhhccCccccccccccCCCCCCChHHHHHhhhccccchHHHHhh
Q 003403 214 L--DSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLKPNYKDPREKLQELEIPIRGMELALTS 278 (823)
Q Consensus 214 ~--~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~~~~~~~~~~~~~~~L~~~Lrgm~~al~~ 278 (823)
. ...++.+-.+......+.+++..+..+..|-..-++.-+-.+...+.+++|..++.||...++.
T Consensus 252 ~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~~~~~~ 318 (459)
T PF10337_consen 252 FDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLSSFCDL 318 (459)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234444455566666777777777777774432222233444445677777777777776665
No 23
>COG4129 Predicted membrane protein [Function unknown]
Probab=97.36 E-value=0.0039 Score=69.21 Aligned_cols=148 Identities=11% Similarity=0.193 Sum_probs=87.4
Q ss_pred CcccCcchhhhhhhhhc-cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCChhHHHHHHHHHHHHHhcccCCchh
Q 003403 46 MPAFPAFSYVTTILILS-DATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALM 124 (823)
Q Consensus 46 ~~~fps~~yv~t~~i~s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~~~~~~~~l~~v~~~t~vv~~p~~t~~v 124 (823)
|+..|.--+.+...|+| ..|..+.++.+|+.+.|+..|++.|.+...++|.+.+.-|+++..+...++.+-+ ..+
T Consensus 29 ~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~~~~~~~--~~g-- 104 (332)
T COG4129 29 LLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKL--ENG-- 104 (332)
T ss_pred HhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhc--ccc--
Confidence 44466666888888888 8999999999999999999999999999999987665555544333222222211 111
Q ss_pred hhhhhccceeeeEEEEEeeCCcccceeeehhhHHHHHHHHHHHHHH-HhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003403 125 AKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASVVA-MLLPYPRLAYHEVKKSSKLYAENASEMLNHFVK 203 (823)
Q Consensus 125 ~kr~al~~~~i~~v~~~~~~~~t~~i~~p~~v~~~~~~G~~~~~~a-~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~ 203 (823)
+-=.+++.+ ++++..-+.+ ..-+. =...+.+|+..+++. ..+|=|....+.-+++.....+++.....-.++
T Consensus 105 ~~~~~~~~~-~ii~~~~~~~-----~~~~~-r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~kv~~~~~~il~~~~~~l~ 177 (332)
T COG4129 105 VVPITVGVL-HILVAAMIPL-----FLIFN-RFLLVFVGVGVAFLVNLVMPPPDYELKLYRAKVEAILASILWEVASYLR 177 (332)
T ss_pred hhHHHHHHH-HHHHHcccch-----hHHHH-HHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111222222 3333322211 11111 345677888877774 444455545555555555555555555444444
Q ss_pred H
Q 003403 204 A 204 (823)
Q Consensus 204 ~ 204 (823)
.
T Consensus 178 ~ 178 (332)
T COG4129 178 D 178 (332)
T ss_pred c
Confidence 3
No 24
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=97.33 E-value=0.0059 Score=59.67 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 003403 413 ALKCSLSLGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPW 492 (823)
Q Consensus 413 AlK~slA~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~vw 492 (823)
++|.+.+..++..++..+|++.|+-+.+-.+++..+..--..+...+=+..+++=+..+.++..++.+.|....+.+.+.
T Consensus 2 ~LRia~g~~l~l~~~~~~~~~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P~~~~l~v~l~ 81 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKLFGWPLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYPVVMLLLVFLL 81 (140)
T ss_pred eeehhHHHHHHHHHHHHHCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 57899999999999999999999999988888886666667777777778888888888888888888887655444333
Q ss_pred HHHHHHHh-cchhhHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 003403 493 IIFSSFLR-HSRMYEEAGAISAVIGALLILGRKNYGTPSEFAIARITEASLGLICFIIVEIL 553 (823)
Q Consensus 493 i~~~s~l~-~~~~Y~lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~ei~IGivia~~V~~l 553 (823)
..+..+.. ++..+..+.+...........+. .+.+.+.++......|+++++++.++
T Consensus 82 ~~~~f~~~~~~~~~l~~~~~lv~~~ii~~f~~----~~~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 82 FFWSFYRMSRGPKFLFGTMLLVGLSIIPVFAS----YNTADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHh----cCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 32222222 33333322221111111122322 23468888999999999999988764
No 25
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=92.75 E-value=0.97 Score=49.31 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEEEEeeCCcc-cceeeehhhHHHHHHHHHHHHHHHhcCCchhhh
Q 003403 102 DVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKT-GIVMHPIHVASSTALGALASVVAMLLPYPRLAY 180 (823)
Q Consensus 102 ~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~~~~~~~~t-~~i~~p~~v~~~~~~G~~~~~~a~llP~P~~A~ 180 (823)
+...+.+++.+|++.+-.--++-+..++++.. +++|.++..+... +...| +....+|.+-..+..++-||.++.
T Consensus 24 ~l~~~~~~~~~F~~~ml~~~G~r~~~i~~~~L-l~~v~t~~~~~~~~~~~~~----~~l~~~Gglwy~~lsl~~~~l~p~ 98 (284)
T PF12805_consen 24 WLLILVLALLTFFFGMLGVYGPRAATIGFATL-LVAVYTMAGPSPGPEALEH----ALLFLAGGLWYLLLSLLWWPLRPY 98 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHhCCCcchHHHHH----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344455555554444333444667776665 4445455555532 23333 477788999888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003403 181 HEVKKSSKLYAENASEMLNHFVKAF 205 (823)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~v~~f 205 (823)
+-+|+.+.+.-+.+++-++.-.+-|
T Consensus 99 r~~rqaLa~~y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 99 RPVRQALAECYRALADYLRAKARFF 123 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999977777
No 26
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=92.58 E-value=0.62 Score=45.60 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhc-cCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCCCCh
Q 003403 23 LRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILS-DATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDRFTA 101 (823)
Q Consensus 23 ~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s-~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~~~~~ 101 (823)
+||++|+.++=.+.- ++..|.-.|.....|++ ..|+-++++..++.+.|++.|+..+++...+.|++.+..
T Consensus 8 iKtaiA~~la~~ia~--------~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~ 79 (141)
T PF06081_consen 8 IKTAIAAFLAILIAQ--------LLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSI 79 (141)
T ss_pred HHHHHHHHHHHHHHH--------HHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence 567777666433211 11123335888888888 999999999999999999999999999988887755333
Q ss_pred h
Q 003403 102 D 102 (823)
Q Consensus 102 ~ 102 (823)
+
T Consensus 80 ~ 80 (141)
T PF06081_consen 80 G 80 (141)
T ss_pred H
Confidence 3
No 27
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=90.78 E-value=1.3 Score=46.93 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=80.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chh--hhhhHHHHHHHHHHHHHHHHHHHhhccCcccccccc-c
Q 003403 174 PYPRLAYHEVKKSSKLYAENASEMLNHFVKAFCAQD-NTA--ALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQI-R 249 (823)
Q Consensus 174 P~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~-~~~--a~~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~-~ 249 (823)
|||..|.+.+|+.+......++.....+++.+..+. +.. ..................|..++....-..||.... +
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~ 80 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKGR 80 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence 999999999999999999999999999998888753 111 111111222333355677788899999999998843 3
Q ss_pred cCCCCCCChHHHHHhhhccccchHHHHhhCC
Q 003403 250 FLKPNYKDPREKLQELEIPIRGMELALTSCP 280 (823)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~~Lrgm~~al~~~~ 280 (823)
|-+..|.+..+..+++...|..|..+....+
T Consensus 81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~ 111 (229)
T PF10334_consen 81 FPKETYQRLLELCQNILDLLSLLSYVSTRLE 111 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3367888888999999988888888777664
No 28
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=86.58 E-value=0.97 Score=42.50 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=35.4
Q ss_pred Ccchhhh-hhhhhccCchhHHHHHHHHHHHHHHHHhHhHHHHHhhcCCCC
Q 003403 50 PAFSYVT-TILILSDATLGDTLRGCWHALYATIQIMIPSILCLWLVGPDR 98 (823)
Q Consensus 50 ps~~yv~-t~~i~s~~t~G~~l~~~~~~l~~t~~~~~~s~l~l~~ig~~~ 98 (823)
|-.+++. +++++...+.|++.+.+++.+.||+.|+..+.+...+. |++
T Consensus 12 ~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~-~~~ 60 (128)
T PF13515_consen 12 PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLF-PGN 60 (128)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCH
Confidence 4344444 33333566999999999999999999988888887665 543
No 29
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=84.67 E-value=0.48 Score=56.75 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=100.1
Q ss_pred cccccchHHHHH------hHHHHHHHHHHHHHHHHhhhcCCcccCCCcccCcchhhhhhhhhccCchhHHHHHHHHHHHH
Q 003403 6 RADSTTKALWRR------RLGSALRTALACSIVGFTTLYSPEHLRHMPAFPAFSYVTTILILSDATLGDTLRGCWHALYA 79 (823)
Q Consensus 6 ~~~~~~~~~wr~------~l~~a~R~alac~i~g~~~~y~p~~~~~~~~fps~~yv~t~~i~s~~t~G~~l~~~~~~l~~ 79 (823)
|+++..+..|+. +.-+|++.+++-++++.+-.+.|. -+-++.-+...+.|++|+=..++|+|+.-..-.-.|
T Consensus 74 kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~--~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~ 151 (625)
T KOG4711|consen 74 KVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPL--YKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVG 151 (625)
T ss_pred HHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeecccc--ccccchhhhheeeEEEEEEEeccchHHHHhHHHHHH
Confidence 344455556654 677799999999999998777763 234444443333455444366666666665555555
Q ss_pred HHHHhHhHHHHHh--h-cCCCCCChhH-----HHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEEEEeeCCccccee
Q 003403 80 TIQIMIPSILCLW--L-VGPDRFTADV-----AAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVM 151 (823)
Q Consensus 80 t~~~~~~s~l~l~--~-ig~~~~~~~~-----~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~~~~~~~~t~~i~ 151 (823)
|+-..+.++-.-| . .|+ .+..+ +....+..+++-.+|.-.+ ....+.-++..|.+..+-+-++ -
T Consensus 152 tL~ag~l~l~~~~la~~~g~--~~~~i~~~~~vF~~~~~~ty~~f~p~iK~---y~y~~lIf~ltf~l~~vs~~r~---~ 223 (625)
T KOG4711|consen 152 TLSAGGLALGIERLAEISGK--DNESIFIGITVFIAGAKATYSLFFPYIKA---YEYGFLIFILTFCLVEVSGYRS---D 223 (625)
T ss_pred HhhhhhhhhhhHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhchhhhc---cchhhhHHHHHhhhheecccch---h
Confidence 5555555554423 2 333 22221 2233346666677775443 3344333334444433334343 2
Q ss_pred eehhhHH----HHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 003403 152 HPIHVAS----STALGALASVVAMLLPYPRLAYHEVKKSS 187 (823)
Q Consensus 152 ~p~~v~~----~~~~G~~~~~~a~llP~P~~A~~~~~~~~ 187 (823)
+++.++. .+++|...|++.-.+-||..|-.++++..
T Consensus 224 ~~~~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~ 263 (625)
T KOG4711|consen 224 YFLELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLD 263 (625)
T ss_pred HHHHHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhh
Confidence 3333443 47899999999999999999997777666
No 30
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=82.13 E-value=1.5e+02 Score=37.27 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH-HHHHHhcchhhH-HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Q 003403 462 QGTAMGSVYGVICSFLLQKSVNFRFLPLLPWII-FSSFLRHSRMYE-EAGAISAVIGALLILGRKNYGTPSEFAIARITE 539 (823)
Q Consensus 462 ~GTvlGav~g~~~~~l~~~~p~~~~l~L~vwi~-~~s~l~~~~~Y~-lag~~~alI~~~~vlg~~~~~~~~~~A~~Rv~e 539 (823)
.|+.+|++.|++........+ ..+++..+.+ ....++...-++ -.||+.+.+.+.++. + ...++... +.|
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~~~~--~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~---~--~~~~~~~~-~~e 268 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANNANL--YQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYT---Q--GSVAFSLA-LYE 268 (764)
T ss_pred HhHHHHHHHHHHHHhcCccHH--HHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHh---c--cchhHHHH-HHH
Confidence 455666666666554333332 2233333332 233444333333 445554433222222 1 11122222 567
Q ss_pred HHHHHHHHHHH
Q 003403 540 ASLGLICFIIV 550 (823)
Q Consensus 540 i~IGivia~~V 550 (823)
+.+++++.+++
T Consensus 269 ~~ia~~lFll~ 279 (764)
T TIGR02865 269 ALIATLLFLLI 279 (764)
T ss_pred HHHHHHHHHHh
Confidence 77777665443
No 31
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=68.25 E-value=1.9e+02 Score=31.71 Aligned_cols=44 Identities=7% Similarity=-0.011 Sum_probs=31.0
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHH
Q 003403 529 PSEFAIARI-TEASLGLICFIIVEILFQPARAATLAKAQLAQSLQ 572 (823)
Q Consensus 529 ~~~~A~~Rv-~ei~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~ 572 (823)
.+-.+.-|+ +.+++|++++-.....+|-..-...+...-.+-..
T Consensus 79 ~~~~~~~R~~lAvliaivIs~pl~l~iF~~eI~~~l~~~~~~~~~ 123 (301)
T PF14362_consen 79 RLLQALPRLLLAVLIAIVISEPLELKIFEKEIDQKLDEIRQEKQD 123 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677787 77889999999999988877666666554443333
No 32
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=63.63 E-value=76 Score=27.35 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003403 538 TEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDI 581 (823)
Q Consensus 538 ~ei~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~ 581 (823)
...++|.+++.++.+++-|. .+..+|+.+.+....+.+-..++
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~~~~ 45 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKAKDL 45 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999995 45667777777777666666555
No 33
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.96 E-value=32 Score=32.21 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 003403 452 ATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLL 490 (823)
Q Consensus 452 aT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~ 490 (823)
..++-+..=+-|+++|+++|.++=.++...|+..++.++
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 445566677889999999999999888888876554443
No 34
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=59.88 E-value=48 Score=28.58 Aligned_cols=48 Identities=23% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003403 158 SSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKAFC 206 (823)
Q Consensus 158 ~~~~~G~~~~~~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~f~ 206 (823)
...++|+++..++.+|.-|. +-+++|+.++...+++.+.++-+.+..-
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~~~~~~~~~ 50 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKAKDLYEEAK 50 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888899998 7799999999999988888766655443
No 35
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=48.02 E-value=3.1e+02 Score=34.39 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q 003403 537 ITEASLGLICFIIVE 551 (823)
Q Consensus 537 v~ei~IGivia~~V~ 551 (823)
+++..|||+++++.+
T Consensus 163 ~i~~ligv~~~fvtn 177 (865)
T KOG4331|consen 163 AIELLIGVFRAFVTN 177 (865)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455667888877766
No 36
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=45.69 E-value=4.1e+02 Score=33.59 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 003403 540 ASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGIKDI 581 (823)
Q Consensus 540 i~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l~~~ 581 (823)
+++|++|+++.+-.+- ..-+.....+.+.++++..++...
T Consensus 153 il~g~i~aF~~n~~l~--~~v~~~~~~~~~~~~Dl~~~l~~~ 192 (806)
T PF05478_consen 153 ILFGVICAFVANQQLS--TGVDDTPNTVNSTLDDLRTFLNDT 192 (806)
T ss_pred HHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHhh
Confidence 4568888777764321 112233445556666666666554
No 37
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=43.59 E-value=5.6e+02 Score=29.42 Aligned_cols=72 Identities=10% Similarity=0.174 Sum_probs=49.0
Q ss_pred hhhH-HHHHHHHHHHHHHHhccC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHH
Q 003403 503 RMYE-EAGAISAVIGALLILGRK---NYGTPSEFAIARITEASLGLICFIIVEILFQPARAATLAKAQLAQSLQALQDGI 578 (823)
Q Consensus 503 ~~Y~-lag~~~alI~~~~vlg~~---~~~~~~~~A~~Rv~ei~IGivia~~V~~lv~P~~a~~~l~~~l~~~L~~l~~~l 578 (823)
+.|| +.|..+.++..+.+...+ ...+..|.-+.=..+.+.|+..++.++. -..+++++.+-+..-++..
T Consensus 220 ~~yGWQG~llasllnsi~l~~arQ~~~fs~l~dLll~l~~Qal~Gl~LGiaIqr-------lrelnqrL~~EL~~~raLa 292 (497)
T COG3851 220 WHYGWQGALLASLLNSIALTIARQTWRFSHLVDLLLSLLAQALTGLGLGIAIQR-------LRELNQRLQKELARNRALA 292 (497)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHH
Confidence 4566 566555554433331111 2356678888889999999999999987 4667777877777777777
Q ss_pred HHH
Q 003403 579 KDI 581 (823)
Q Consensus 579 ~~~ 581 (823)
+.+
T Consensus 293 eqL 295 (497)
T COG3851 293 EQL 295 (497)
T ss_pred HHH
Confidence 776
No 38
>PRK11677 hypothetical protein; Provisional
Probab=43.20 E-value=1.9e+02 Score=28.36 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHccCc-hhHHHHHHHHHHHHHHHHHHH
Q 003403 538 TEASLGLICFIIVEILFQPA-RAATLAKAQLAQSLQALQDGI 578 (823)
Q Consensus 538 ~ei~IGivia~~V~~lv~P~-~a~~~l~~~l~~~L~~l~~~l 578 (823)
+..+||++|++++..+.-|. +....+.+++.+.-..+.++-
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Yk 49 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYR 49 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888876665 344555555554444443333
No 39
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=39.83 E-value=3.1e+02 Score=30.24 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhhHHHH--HHH
Q 003403 562 LAKAQLAQSLQALQDGIKDIVLFADQKGKATPTALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHGSCYENI--LAS 639 (823)
Q Consensus 562 ~l~~~l~~~L~~l~~~l~~~~L~~~~~~~~~~~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~pf~~~~y~~l--~~~ 639 (823)
.++.++.+....+..--+.+ |.. -...+++.+..+...+..|+..++..+.= ..--+++ ..+
T Consensus 39 lIr~rVrq~V~hVqaqEreL-Le~------v~~rYqR~y~ema~~L~~LeavLqRir~G---------~~LVekM~~YAS 102 (324)
T PF12126_consen 39 LIRARVRQVVAHVQAQEREL-LEA------VEARYQRDYEEMAGQLGRLEAVLQRIRTG---------GALVEKMKLYAS 102 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHhH---------HHHHHHHHHhcc
Confidence 34455555555444443433 111 12345666777888888777777653221 1111111 112
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchHHhhhhhHhH-HHHHHHHHhhhhhhhH
Q 003403 640 LSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDD-LELFKEKVGHSLKCFE 694 (823)
Q Consensus 640 l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~~~v~~~-~~~~~~~v~~~l~~l~ 694 (823)
=+..+|-=.++.++|..|+++.|. .+...++.| +.+|+..+-....|.-
T Consensus 103 DQEVLdMh~FlreAL~rLrqeePq------~lqa~V~td~F~E~k~rLQ~L~scIt 152 (324)
T PF12126_consen 103 DQEVLDMHGFLREALERLRQEEPQ------NLQAAVRTDGFDEFKARLQDLVSCIT 152 (324)
T ss_pred hHHHHHHHHHHHHHHHHhhhhcCc------ccccceecccHHHHHHHHHHHHHHHh
Confidence 233344334788888888875432 233445555 8888888877777763
No 40
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=39.63 E-value=6.7e+02 Score=32.54 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=23.8
Q ss_pred cccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcC
Q 003403 716 HDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSING 759 (823)
Q Consensus 716 ~dle~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 759 (823)
.++|..+.++ -+.+.+.+. .+.+.++++.-||.
T Consensus 1113 t~LEk~k~~~----------l~~ikK~ia-~lnnlqqElklLRn 1145 (1439)
T PF12252_consen 1113 TDLEKAKLDN----------LDSIKKAIA-NLNNLQQELKLLRN 1145 (1439)
T ss_pred HHHhcccccc----------HHHHHHHHH-HHHHHHHHHHHHHh
Confidence 5677666653 456666665 68899999988884
No 41
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=37.67 E-value=3.7e+02 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHccCchh---HHHHHHHHHHHHHHHHHHHH
Q 003403 537 ITEASLGLICFIIVEILFQPARA---ATLAKAQLAQSLQALQDGIK 579 (823)
Q Consensus 537 v~ei~IGivia~~V~~lv~P~~a---~~~l~~~l~~~L~~l~~~l~ 579 (823)
+..+++|.+++.++.+++-|.+- +..+++..++......+...
T Consensus 8 l~G~liGgiiGa~aaLL~AP~sGkelR~~~K~~~~~~~~~ae~~~~ 53 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPKSGKELRKKLKKSGDALFELAEDKGT 53 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45688999999999999999763 22334444444433333333
No 42
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=34.41 E-value=4.2e+02 Score=25.38 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHH
Q 003403 529 PSEFAIARITEA 540 (823)
Q Consensus 529 ~~~~A~~Rv~ei 540 (823)
..|.+-.|+.|+
T Consensus 92 q~d~Ak~ri~d~ 103 (118)
T PF01277_consen 92 QLDYAKRRIADT 103 (118)
T ss_pred cHHHHHHHHHHH
Confidence 446666666665
No 43
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=33.22 E-value=7.2e+02 Score=27.68 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhh
Q 003403 594 TALRDKQKRLKSHINELDKFIAEAEMEPNFWFLPFHG-SCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQ 672 (823)
Q Consensus 594 ~~~~~~~~~L~~~L~~L~~ll~~A~~EP~~w~~pf~~-~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~ 672 (823)
.+++..-..+...+..+++.+.+-+.+ .||.. ..|.. ..++|...+.++.+.+..-. ..+.
T Consensus 171 seLe~~~s~~sk~Lq~lqq~v~~Lask-----~~y~pd~~~~e---~~~~Lr~~L~tflq~~~~F~----------~~Y~ 232 (325)
T PF06694_consen 171 SELEKKASELSKQLQSLQQQVAELASK-----HPYNPDEEYVE---KESQLRLELETFLQTAAGFN----------HCYE 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCcchhhHH---HHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 345555555566666677777665555 33433 33332 33334444443333222111 1122
Q ss_pred hhhHhHHHH----HHHHHhhhhhhhHHHHHHhhHHhhhhhhhhcccccc-cccCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003403 673 EPINDDLEL----FKEKVGHSLKCFEEVILIKSLAVLAPERQNRNISHD-VESGRLPNEDVPRTLSPDEEEIEEILSSFL 747 (823)
Q Consensus 673 ~~v~~~~~~----~~~~v~~~l~~l~~~~~~~s~~~l~~~~~~~~~~~d-le~~~~p~~~~~~~~~~~~~~~~~~~~~~l 747 (823)
..++.||.. --.-+|++.+.+.+.. ....+.|.+ +++.+.++. +-.|..|... +....+.+++
T Consensus 233 ~EIrpWch~~~~P~L~gLGPAa~Rlle~y-~~l~klL~n-L~~lr~Sh~ai~~gs~~t~s------~e~~s~~~iv---- 300 (325)
T PF06694_consen 233 KEIRPWCHMMEVPQLHGLGPAANRLLELY-KMLLKLLGN-LATLRDSHAAIAAGSSPTTS------DEPSSVTQIV---- 300 (325)
T ss_pred hcchhhhccCccchhhcccHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHhcCCCcccc------CCCccHHHHH----
Confidence 345556531 0134567777766522 112223332 445555665 5545543111 0223334444
Q ss_pred HHHHHHHHhhcC
Q 003403 748 QHSKEVANSING 759 (823)
Q Consensus 748 ~~~~~~~~~l~~ 759 (823)
..+.++++.|++
T Consensus 301 s~~e~al~~lnr 312 (325)
T PF06694_consen 301 SECETALTQLNR 312 (325)
T ss_pred HHHHHHHHHHHh
Confidence 356777777774
No 44
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=30.83 E-value=3.5e+02 Score=25.85 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003403 156 VASSTALGALASVVAMLLPYPRLAYHEVKKSSKLYAENASEMLNHFVKA 204 (823)
Q Consensus 156 v~~~~~~G~~~~~~a~llP~P~~A~~~~~~~~~~~~~~~~~~l~~~v~~ 204 (823)
.-..+.+|++...++.||.=|+ .-+++|+.++...+..-+.-....+.
T Consensus 7 ~l~G~liGgiiGa~aaLL~AP~-sGkelR~~~K~~~~~~~~~ae~~~~~ 54 (115)
T COG4980 7 FLFGILIGGIIGAAAALLFAPK-SGKELRKKLKKSGDALFELAEDKGTD 54 (115)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4456778888888888888999 67888877776666655554444333
No 45
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.76 E-value=1e+03 Score=31.91 Aligned_cols=10 Identities=30% Similarity=0.753 Sum_probs=5.4
Q ss_pred cCCCCcHHHH
Q 003403 430 YNKENGYWSG 439 (823)
Q Consensus 430 ~~l~~p~WA~ 439 (823)
|+-..|-|.-
T Consensus 44 YsPsDPSwS~ 53 (1355)
T PRK10263 44 FNPSDPSWSQ 53 (1355)
T ss_pred CCccCCcccc
Confidence 4445576753
No 46
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=30.22 E-value=4.8e+02 Score=24.76 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Q 003403 438 SGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQKSVNFRFLPLLPWIIFSSFLR 500 (823)
Q Consensus 438 A~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~~p~~~~l~L~vwi~~~s~l~ 500 (823)
...++.+...|+.- ..+=.+=+.|-++++++|+++..++++.++...+++.+-+......+
T Consensus 7 gAsa~llf~~p~sp--~aqP~~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~ 67 (120)
T PF04982_consen 7 GASAVLLFGAPSSP--LAQPRNVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTR 67 (120)
T ss_pred HHHHHHhhcCCCCc--hhchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHc
Confidence 33344444455532 44555667999999999999998887655444444443333444444
No 47
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=29.55 E-value=1.5e+02 Score=32.82 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cCC--CCc-HHHHH--HHHHh-hccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003403 407 LESLVFALKCSLSLGLAVILGLM-YNK--ENG-YWSGL--TIAIS-FATNRQATFKVANARAQGTAMGSVYGVICSFLLQ 479 (823)
Q Consensus 407 ~~~l~~AlK~slA~~LA~~ia~~-~~l--~~p-~WA~l--Tv~IV-~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~ 479 (823)
+.+++.++-..+++.++.++.-+ ++. +-| .=|.+ +++.. ..|.. -+..=+.=+.|.++.+++|+.+.++++
T Consensus 26 rerl~~~~gA~iGilltg~~c~~~~~~~~~lpllvAPmGASAVLLFavpaS--PLAQPwsiiGGNlvaAlvgvtva~~vg 103 (382)
T COG3448 26 RERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAPMGASAVLLFAVPAS--PLAQPWSIIGGNLVAALVGVTVAYFVG 103 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccCcceEEEEeccCC--ccccchhhhcchHHHHHHhhhhhhhhC
Confidence 45666666666666666555433 443 222 11111 11111 12221 122334557899999999999998888
Q ss_pred chhhHHHHHHHHHHHHHHHHh
Q 003403 480 KSVNFRFLPLLPWIIFSSFLR 500 (823)
Q Consensus 480 ~~p~~~~l~L~vwi~~~s~l~ 500 (823)
+.+....+++.+.++..++++
T Consensus 104 d~~la~~lavsLaI~~M~~~r 124 (382)
T COG3448 104 DPVLASGLAVSLAIGAMFALR 124 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHhc
Confidence 766666677777776667776
No 48
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.17 E-value=2.1e+02 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHH--HHhhccChh
Q 003403 420 LGLAVILGLMYNKENGYWSGLTI--AISFATNRQ 451 (823)
Q Consensus 420 ~~LA~~ia~~~~l~~p~WA~lTv--~IV~qps~G 451 (823)
..|+..+++-.|++.|+.+..++ +|||.-..|
T Consensus 58 tALat~ial~~G~dS~lFaiA~vfaiIvm~DA~G 91 (153)
T COG1963 58 TALATSIALTEGLDSPLFAIAAVFAIIVMYDATG 91 (153)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhhhhhh
Confidence 34566677889999999988554 455554444
No 49
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=25.67 E-value=3.6e+02 Score=28.99 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 003403 458 NARAQGTAMGSVYGV 472 (823)
Q Consensus 458 ~~Ri~GTvlGav~g~ 472 (823)
..=++||++|+++|-
T Consensus 145 ~~Wv~~t~iGa~~G~ 159 (238)
T COG1296 145 LYWVVGTLIGALLGS 159 (238)
T ss_pred HHHHHHHHHHHHhhh
Confidence 344688999999884
No 50
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=25.51 E-value=1e+03 Score=27.02 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003403 457 ANARAQGTAMGSVYGVICS 475 (823)
Q Consensus 457 ~~~Ri~GTvlGav~g~~~~ 475 (823)
+..-+++|+.|+.+++...
T Consensus 46 ~ar~lLstia~smitv~~~ 64 (371)
T PF10011_consen 46 GARTLLSTIAGSMITVTGF 64 (371)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455688888888877644
No 51
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.46 E-value=5.5e+02 Score=24.69 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHccCch-hHHHHHHHHH
Q 003403 539 EASLGLICFIIVEILFQPAR-AATLAKAQLA 568 (823)
Q Consensus 539 ei~IGivia~~V~~lv~P~~-a~~~l~~~l~ 568 (823)
..+||+++++++..+..+.. -...+.+++.
T Consensus 5 ~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~ 35 (128)
T PF06295_consen 5 GLVVGLIIGFLIGRLTSSNQQKQAKLEQELE 35 (128)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 34567777777777766653 2234444443
No 52
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=24.52 E-value=2.8e+02 Score=30.86 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=82.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhhcCCccc--CCCcccCcchhhhhhhhhc-cCchhHHHHHHHHHHHHHHHHhHhHH
Q 003403 12 KALWRRRLGSALRTALACSIVGFTTLYSPEHL--RHMPAFPAFSYVTTILILS-DATLGDTLRGCWHALYATIQIMIPSI 88 (823)
Q Consensus 12 ~~~wr~~l~~a~R~alac~i~g~~~~y~p~~~--~~~~~fps~~yv~t~~i~s-~~t~G~~l~~~~~~l~~t~~~~~~s~ 88 (823)
...||+|+..++=..++-++.|++--|.+... ...+-=| .=...+++|. .+ +-+.+=|+++.|..+++..+.
T Consensus 22 ~v~~rerl~~~~gA~iGilltg~~c~~~~~~~~~lpllvAP--mGASAVLLFavpa---SPLAQPwsiiGGNlvaAlvgv 96 (382)
T COG3448 22 PVRLRERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAP--MGASAVLLFAVPA---SPLAQPWSIIGGNLVAALVGV 96 (382)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccc--cCcceEEEEeccC---CccccchhhhcchHHHHHHhh
Confidence 45789998888877777777777766644211 0111111 0011233333 22 236788999999999988888
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHHHhcccCCchhhhhhhccceeeeEEEEEeeCCcccceeeehhhHHHHHHHHHHHH
Q 003403 89 LCLWLVGPDRFTADVAAVVVTLMSFVVALPESTALMAKRIAFGQIVIVCVGTVVHGAKTGIVMHPIHVASSTALGALASV 168 (823)
Q Consensus 89 l~l~~ig~~~~~~~~~l~~v~~~t~vv~~p~~t~~v~kr~al~~~~i~~v~~~~~~~~t~~i~~p~~v~~~~~~G~~~~~ 168 (823)
.+..++|....-.+ +.|++.-....+-..-||=....||... .-+--+...+-+.++-| |+..+++=+.+++
T Consensus 97 tva~~vgd~~la~~---lavsLaI~~M~~~rcLHPPsgAvALtav---lgGpav~~~g~~F~l~P--val~SliLv~~a~ 168 (382)
T COG3448 97 TVAYFVGDPVLASG---LAVSLAIGAMFALRCLHPPSGAVALTAV---LGGPAVHRLGYNFVLWP--VALNSLILVGLAL 168 (382)
T ss_pred hhhhhhCChHHHHH---HHHHHHHHHHHHhcCCCCCchHHHHHHH---hcCcccccCCCCceehh--hhhhhHHHHHHHH
Confidence 88888875433222 2222222221111222222344444221 11111222244567888 8888887666666
Q ss_pred H---HHhcCCch
Q 003403 169 V---AMLLPYPR 177 (823)
Q Consensus 169 ~---a~llP~P~ 177 (823)
+ ++==+||+
T Consensus 169 lynnl~~r~YPh 180 (382)
T COG3448 169 LYNNLTRRTYPH 180 (382)
T ss_pred HHHHHhcCCCCC
Confidence 6 66678998
No 53
>PRK09776 putative diguanylate cyclase; Provisional
Probab=24.04 E-value=1e+03 Score=30.72 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003403 458 NARAQGTAMGSVYGV 472 (823)
Q Consensus 458 ~~Ri~GTvlGav~g~ 472 (823)
..+..|-++|++++.
T Consensus 43 ~~~~~~~~~~~~~~~ 57 (1092)
T PRK09776 43 GRMWPGILLSCSLGN 57 (1092)
T ss_pred hhhhHHHHHHHHHHH
Confidence 333344444444443
No 54
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=22.86 E-value=1.1e+03 Score=26.41 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=55.2
Q ss_pred Hhhhhhhhhcccccc-c--ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchhhhHHHHH
Q 003403 703 AVLAPERQNRNISHD-V--ESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGF 779 (823)
Q Consensus 703 ~~l~~~~~~~~~~~d-l--e~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F 779 (823)
.+-+++++.+|...| . +.++-| ||++++++.-|..+-+.+=+.+.. .-+.+-|+|-.+.+|.=
T Consensus 150 ~hh~KKLEgRRldyD~kkkk~~K~~-----------dEelrqA~eKfEESkE~aE~sM~n---lle~d~eqvsqL~~Li~ 215 (366)
T KOG1118|consen 150 QHHRKKLEGRRLDYDYKKKKQGKIK-----------DEELRQALEKFEESKELAEDSMFN---LLENDVEQVSQLSALIQ 215 (366)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccCC-----------hHHHHHHHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHH
Confidence 445666777777777 2 223333 788899988777766655555542 12334678888888888
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 003403 780 CISSLMKETTKIEKEIKE 797 (823)
Q Consensus 780 ~l~~l~~e~~~l~~~v~e 797 (823)
.--+++++..+|-+.+..
T Consensus 216 aqLdfhrqs~~iL~~l~~ 233 (366)
T KOG1118|consen 216 AQLDFHRQSTQILQELQM 233 (366)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888899998888877765
No 55
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=22.63 E-value=7.2e+02 Score=24.21 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003403 420 LGLAVILGLMYNKENGYWSGLTIAISFATNRQATFKVANARAQGTAMGSVYGVICSFLLQK 480 (823)
Q Consensus 420 ~~LA~~ia~~~~l~~p~WA~lTv~IV~qps~GaT~~k~~~Ri~GTvlGav~g~~~~~l~~~ 480 (823)
..+..+++..++++ -|+..-....+-.. |+..+....=+.+...|.+.|.+.......
T Consensus 8 ~~~w~~~a~~~~l~--~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~ 65 (144)
T PF06496_consen 8 AGLWAWLAPALGLP--GWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGL 65 (144)
T ss_pred HHHHHHHHHHcCch--HHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556654 99985444444333 666666666677888888888877765543
No 56
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=22.29 E-value=5.3e+02 Score=32.63 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003403 461 AQGTAMGSVYGVICSFLL 478 (823)
Q Consensus 461 i~GTvlGav~g~~~~~l~ 478 (823)
+.|.++|.++|.++..+.
T Consensus 213 ~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 213 IFGSILGCIIGYCGRKAI 230 (810)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777777777666554
No 57
>PRK10490 sensor protein KdpD; Provisional
Probab=22.16 E-value=9.7e+02 Score=30.68 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=6.6
Q ss_pred HHHhhcccchhh
Q 003403 202 VKAFCAQDNTAA 213 (823)
Q Consensus 202 v~~f~~~~~~~a 213 (823)
.+.|....|..+
T Consensus 206 ~~~~f~~~nl~~ 217 (895)
T PRK10490 206 IEHFFRKGNLIA 217 (895)
T ss_pred HHhcCCcchHHH
Confidence 445665566544
No 58
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.32 E-value=2.4e+02 Score=22.88 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003403 458 NARAQGTAMGSVYGVICS 475 (823)
Q Consensus 458 ~~Ri~GTvlGav~g~~~~ 475 (823)
..|++|.++|-++|++..
T Consensus 8 ~~~iiG~~~G~ila~l~l 25 (51)
T PF10031_consen 8 RGKIIGGLIGLILALLIL 25 (51)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 346666666666666544
No 59
>PTZ00478 Sec superfamily; Provisional
Probab=21.21 E-value=2.3e+02 Score=25.35 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchhhhHHHHHhHHHHHHHHHHH
Q 003403 736 EEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKI 791 (823)
Q Consensus 736 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l 791 (823)
.+.+-+.+..|++.++..+.+.++.+..| ...+....++||++..++.-+.+|
T Consensus 16 ~~~v~~~~~eF~kds~r~vkrctKPdrkE---f~kiakat~iGf~imG~IGy~IKL 68 (81)
T PTZ00478 16 VGYVVSGVQEFANDSRRLIRKCTKPDAKE---YTNIAYACSVGFFIMGFIGYSIKL 68 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHhhhe
Confidence 45556667889999999999999877766 677778899999999998777665
No 60
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=20.69 E-value=1.4e+03 Score=26.92 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 003403 531 EFAIARITEASLGLICFIIVEILF 554 (823)
Q Consensus 531 ~~A~~Rv~ei~IGivia~~V~~lv 554 (823)
..-..|...++.|++-+.+.+.++
T Consensus 310 ~TycGr~v~l~tGivGa~~sallv 333 (489)
T KOG3684|consen 310 NTYCGRGVALLTGIVGAGCSSLLV 333 (489)
T ss_pred CccccchHHHHhhhhhhhHHHHHH
Confidence 456678888777766655555543
No 61
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.14 E-value=1e+02 Score=26.52 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003403 456 VANARAQGTAMGSVYGVICSFL 477 (823)
Q Consensus 456 k~~~Ri~GTvlGav~g~~~~~l 477 (823)
....-+.||++|+++++++.++
T Consensus 48 ~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 48 SNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888776654
No 62
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=20.13 E-value=74 Score=35.34 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003403 458 NARAQGTAMGSVYGVICSFL 477 (823)
Q Consensus 458 ~~Ri~GTvlGav~g~~~~~l 477 (823)
+-|+.|+++|+++|++...+
T Consensus 344 ~IrinGallG~liG~~~~~i 363 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLI 363 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999987653
Done!