Query 003403
Match_columns 823
No_of_seqs 294 out of 1516
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 00:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olt_A Hypothetical protein; s 34.9 3.4E+02 0.012 26.7 20.2 34 624-657 77-110 (227)
2 3twe_A Alpha4H; unknown functi 25.6 74 0.0025 20.7 3.2 19 781-799 3-21 (27)
3 4dx5_A Acriflavine resistance 24.1 5.4E+02 0.018 31.7 13.7 21 537-557 1004-1024(1057)
4 2ww9_B Protein transport prote 15.3 2.2E+02 0.0074 24.2 5.0 48 741-791 23-70 (80)
5 3mp7_B Preprotein translocase 13.9 1.4E+02 0.0048 24.0 3.3 47 743-792 8-54 (61)
6 3ne5_A Cation efflux system pr 12.6 5.6E+02 0.019 31.4 10.0 30 149-180 480-509 (1054)
7 3ip4_B Aspartyl/glutamyl-tRNA( 12.0 1.8E+02 0.0062 32.9 4.7 53 735-799 414-472 (483)
8 2zy9_A Mg2+ transporter MGTE; 11.9 6.1E+02 0.021 28.1 9.2 21 534-555 450-470 (473)
9 2wwb_B SEC61gamma, protein tra 11.3 2.1E+02 0.0071 23.6 3.6 46 743-791 11-56 (68)
10 1rh5_B Preprotein translocase 10.4 1.8E+02 0.0063 24.3 3.1 49 742-793 11-59 (74)
No 1
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=34.92 E-value=3.4e+02 Score=26.68 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=28.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003403 624 WFLPFHGSCYENILASLSRMADLLLFVAYKTEFL 657 (823)
Q Consensus 624 w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L 657 (823)
+..|++......+...+.++.|.+..++.++...
T Consensus 77 ~~~P~dredi~~L~~~lD~I~D~~~~~a~~~~~~ 110 (227)
T 2olt_A 77 LFMPVERTDLLELLTQQDKIANKAKDISGRVIGR 110 (227)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5679999889999999999999988888877654
No 2
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.58 E-value=74 Score=20.72 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003403 781 ISSLMKETTKIEKEIKELI 799 (823)
Q Consensus 781 l~~l~~e~~~l~~~v~el~ 799 (823)
-+++-+|++++.++..+|-
T Consensus 3 adelykeledlqerlrklr 21 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4688999999999988764
No 3
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=24.11 E-value=5.4e+02 Score=31.65 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHccCc
Q 003403 537 ITEASLGLICFIIVEILFQPA 557 (823)
Q Consensus 537 v~ei~IGivia~~V~~lv~P~ 557 (823)
-.-+.+|++++++++.++.|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999888885
No 4
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=15.35 E-value=2.2e+02 Score=24.22 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccccccccchhhhHHHHHhHHHHHHHHHHH
Q 003403 741 EILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKI 791 (823)
Q Consensus 741 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l 791 (823)
+.+..|++.++..+...+.++.+| ...+....++||++..++.=+.+|
T Consensus 23 e~~~~f~kd~~rvlk~~~KPdr~E---f~~iak~t~iG~~imG~IGfiIkL 70 (80)
T 2ww9_B 23 EAPVEFVREGTQFLAKCKKPDLKE---YTKIVKAVGIGFIAVGIIGYAIKL 70 (80)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999988877666 778889999999999988777665
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=13.93 E-value=1.4e+02 Score=24.02 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccccchhhhHHHHHhHHHHHHHHHHHH
Q 003403 743 LSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIE 792 (823)
Q Consensus 743 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l~ 792 (823)
+..|++.++..++..++++.+| ...+..+.++||++..++.=+.++-
T Consensus 8 ~~~f~kd~~rvlk~~~KPd~~E---f~~iak~~~iG~~i~G~iGf~Ikli 54 (61)
T 3mp7_B 8 IRHFWKESRRAFLVTKKPNWAT---YKRAAKITGLGIILIGLIGMLIRIV 54 (61)
T ss_dssp CTTHHHHHTHHHHHSCCCCTTH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558889999999999877776 7788889999999998887776664
No 6
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=12.56 E-value=5.6e+02 Score=31.45 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=22.4
Q ss_pred ceeeehhhHHHHHHHHHHHHHHHhcCCchhhh
Q 003403 149 IVMHPIHVASSTALGALASVVAMLLPYPRLAY 180 (823)
Q Consensus 149 ~i~~p~~v~~~~~~G~~~~~~a~llP~P~~A~ 180 (823)
..++| ++...++|++++++..++--|-+..
T Consensus 480 ~~~~~--~~~~~~~gl~~s~~~~l~~~P~l~~ 509 (1054)
T 3ne5_A 480 RLFGP--LAFTKTYAMAGAALLAIVVIPILMG 509 (1054)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677 7777889999999977776676544
No 7
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=11.96 E-value=1.8e+02 Score=32.85 Aligned_cols=53 Identities=15% Similarity=0.382 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhcCCcccccccccchhhhHHHHHhHHHHHHHHH------HHHHHHHHHH
Q 003403 735 DEEEIEEILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETT------KIEKEIKELI 799 (823)
Q Consensus 735 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F~l~~l~~e~~------~l~~~v~el~ 799 (823)
|++++++++..-++.-.+.+++.++ ++.+ ++||.++++||++. ...+-++|..
T Consensus 414 D~~eLe~iV~eVIa~np~~v~~~k~-GK~k-----------a~gfLVGQVMK~tkGKAdP~~VnelL~e~L 472 (483)
T 3ip4_B 414 DEATLLKFVNEALDNNEQSVEDYKN-GKGK-----------AMGFLVGQIMKASKGQANPQLVNQLLKQEL 472 (483)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHT-TCSC-----------HHHHHHHHHHHHTTSCBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCHHHHHHHHc-cCHH-----------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5778999999999999999999884 3333 79999999999874 3444455533
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=11.94 E-value=6.1e+02 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q 003403 534 IARITEASLGLICFIIVEILFQ 555 (823)
Q Consensus 534 ~~Rv~ei~IGivia~~V~~lv~ 555 (823)
+.=+.++ +|+++++.+..++.
T Consensus 450 itt~~D~-~g~~~~~~~a~~~l 470 (473)
T 2zy9_A 450 VATLSDV-TGLLIYLSVARLLL 470 (473)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHH
Confidence 3334444 47777777666543
No 9
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=11.26 E-value=2.1e+02 Score=23.57 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccccchhhhHHHHHhHHHHHHHHHHH
Q 003403 743 LSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKI 791 (823)
Q Consensus 743 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l 791 (823)
+..|++.++..+...++++.+| ...+....++||++..++.=+.++
T Consensus 11 ~~~f~k~~~r~lk~~~KPdr~E---f~~iak~~~iG~~i~G~IGf~Ikl 56 (68)
T 2wwb_B 11 SRQFVKDSIRLVKRCTKPDRKE---FQKIAMATAIGFAIMGFIGFFVKL 56 (68)
T ss_dssp HHHHHHHHHHHHHHCCCCCTHH---HHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999877776 778888899999999888776655
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=10.35 E-value=1.8e+02 Score=24.28 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccccccchhhhHHHHHhHHHHHHHHHHHHH
Q 003403 742 ILSSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKIEK 793 (823)
Q Consensus 742 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l~~ 793 (823)
.+..|+..++..+...++.+.+| ...+..+.++||++..++.=+.++--
T Consensus 11 ~~~~f~kd~~rvlk~~~KPdr~E---F~~iak~~~iG~~imG~IGfiIkli~ 59 (74)
T 1rh5_B 11 QLKEFIEECRRVWLVLKKPTKDE---YLAVAKVTALGISLLGIIGYIIHVPA 59 (74)
T ss_dssp -CCHHHHHHHHHHHSEECCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558889999999888877766 77888999999999998887777643
Done!