Query 003403
Match_columns 823
No_of_seqs 294 out of 1516
Neff 6.5
Searched_HMMs 13730
Date Tue Mar 26 00:03:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003403.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003403hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 14.6 93 0.0068 22.8 4.3 45 744-791 2-46 (56)
2 d1hx8a1 a.7.8.2 (A:167-299) AP 8.4 5.3E+02 0.038 21.5 9.4 86 179-272 44-133 (133)
3 d1st6a3 a.24.9.1 (A:253-371) V 7.5 5.6E+02 0.041 21.1 8.0 29 589-617 90-118 (119)
4 d1fpoa2 a.23.1.1 (A:77-171) HS 7.2 4.9E+02 0.035 20.1 7.9 47 183-229 38-84 (95)
5 d1wh9a_ d.52.3.1 (A:) Ribosoma 6.6 1.1E+02 0.0079 24.6 2.2 39 778-816 47-85 (92)
6 d1st6a5 a.24.9.1 (A:489-646) V 6.4 7.2E+02 0.053 21.3 12.7 102 632-755 49-154 (158)
7 d1st6a3 a.24.9.1 (A:253-371) V 6.3 6.4E+02 0.047 20.7 9.6 50 634-687 67-116 (119)
8 d2e74d2 f.23.12.1 (D:12-45) IS 6.0 1.7E+02 0.013 18.7 2.4 13 461-473 16-28 (34)
9 d1lkia_ a.26.1.1 (A:) Leukemia 4.7 8.8E+02 0.064 20.5 10.9 75 603-679 25-111 (172)
10 d1q90b_ f.21.1.2 (B:) Cytochro 4.3 6.5E+02 0.047 22.6 6.5 55 403-457 108-165 (212)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=14.64 E-value=93 Score=22.82 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcCCcccccccccchhhhHHHHHhHHHHHHHHHHH
Q 003403 744 SSFLQHSKEVANSINGYDGEEKHLSQTVLVLNGLGFCISSLMKETTKI 791 (823)
Q Consensus 744 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~F~l~~l~~e~~~l 791 (823)
.+|+..++..+...+.++.+| ...+..+.++||++..++.=+..+
T Consensus 2 k~F~~es~Rvlk~~~KP~~~E---f~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 2 KEFIEECRRVWLVLKKPTKDE---YLAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp CHHHHHHHHHHHSEECCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888998988888876665 777888889999988887766554
No 2
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=8.41 E-value=5.3e+02 Score=21.49 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHhhccCccccccccccCC----CC
Q 003403 179 AYHEVKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAKQLLSIKDKQEGMLWERPQIRFLK----PN 254 (823)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a~~~i~~~k~l~~a~~~~l~~i~~~~~~~~wE~~~~~~~~----~~ 254 (823)
|.+-+=+++.+.-..+.+..--+++.|-.-++.+|.....-=|......+++- +..+ |=+. .+..+ +.
T Consensus 44 A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al~iyk~~~~q~e~L~----~f~~---~ck~-~g~~r~e~P~l 115 (133)
T d1hx8a1 44 SFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVG----EFLK---VAEN-VGIDKGDIPDL 115 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHH-TTCCGGGSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHH-cCccccCCCCC
Confidence 34445567777777888888888899987777665443444444444444432 2111 1111 12222 33
Q ss_pred CCChHHHHHhhhccccch
Q 003403 255 YKDPREKLQELEIPIRGM 272 (823)
Q Consensus 255 ~~~~~~~~~~L~~~Lrgm 272 (823)
...+.++++.||.+|++|
T Consensus 116 ~~~p~sll~~LEe~l~~l 133 (133)
T d1hx8a1 116 TKAPSSLLDALEQHLATL 133 (133)
T ss_dssp CCCCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 456678899999998876
No 3
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.54 E-value=5.6e+02 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 003403 589 GKATPTALRDKQKRLKSHINELDKFIAEA 617 (823)
Q Consensus 589 ~~~~~~~~~~~~~~L~~~L~~L~~ll~~A 617 (823)
|..+.++-+...+++...|..|...++.|
T Consensus 90 G~G~sPeA~~lA~qi~~kL~~L~~~v~~A 118 (119)
T d1st6a3 90 GQGATPMAMQKAQQVSQGLDLLTAKVENA 118 (119)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566677788888999999999988876
No 4
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=7.20 E-value=4.9e+02 Score=20.08 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHH
Q 003403 183 VKKSSKLYAENASEMLNHFVKAFCAQDNTAALDSISEAKSLFKAGAK 229 (823)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~v~~f~~~~~~~a~~~i~~~k~l~~a~~~ 229 (823)
+.+-....-..+.+..+.+-.+|-.+|..+|...+.++||+..-..+
T Consensus 38 l~~l~~ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~e 84 (95)
T d1fpoa2 38 LESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSS 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHH
Confidence 33344445555556666667777777778888889999999654444
No 5
>d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.64 E-value=1.1e+02 Score=24.60 Aligned_cols=39 Identities=0% Similarity=0.079 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhccCCCCCcccchhccc
Q 003403 778 GFCISSLMKETTKIEKEIKELIKWENPTRNINLYEISCK 816 (823)
Q Consensus 778 ~F~l~~l~~e~~~l~~~v~el~~~~~~~~~~~~~~~~~~ 816 (823)
|-.++.=-++.++|.+.+++....+||.-++|..||--|
T Consensus 47 GivIGrkG~~I~~L~~~l~k~~~~~~~~i~lnae~Ia~r 85 (92)
T d1wh9a_ 47 QNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATR 85 (92)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEECCCS
T ss_pred ceeeccCchhHHHHHHHHHHHHCCCCCcEEEEEEeeccc
Confidence 344444456778888888888888888888888888544
No 6
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.36 E-value=7.2e+02 Score=21.30 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhhhhhHhHHHHHHHHHhhhhhh--hHH--HHHHhhHHhhhh
Q 003403 632 CYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVGHSLKC--FEE--VILIKSLAVLAP 707 (823)
Q Consensus 632 ~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~~~v~~~~~~~~~~v~~~l~~--l~~--~~~~~s~~~l~~ 707 (823)
.-.+++..|..+.+ +.+.+..|.+.++.-.|.-+++-.++.+-++.+...+...+-. .+. -+..+...+.++
T Consensus 49 ~r~~Il~~C~el~~----l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL~~~v~~Avv~~v~d~f~dt~tpl~~l~~A 124 (158)
T d1st6a5 49 YRQDLLAKCDRVDQ----LAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVA 124 (158)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33556656555544 6666777777676665666667667777777777776666632 222 111122222221
Q ss_pred hhhhcccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 003403 708 ERQNRNISHDVESGRLPNEDVPRTLSPDEEEIEEILSSFLQHSKEVAN 755 (823)
Q Consensus 708 ~~~~~~~~~dle~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 755 (823)
. ..|... |-.+.+.++=...|.+|++..++
T Consensus 125 -a------------~a~~~~-----p~re~~~~e~a~~f~~~a~~~~~ 154 (158)
T d1st6a5 125 -A------------TAPSDT-----PNREEVFEERAANFENHAARLGA 154 (158)
T ss_dssp -H------------HSCSCS-----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -H------------hCCCCC-----CCccHHHHHHHHHHHHHHHHHHH
Confidence 1 121111 11467777777888888887764
No 7
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.34 E-value=6.4e+02 Score=20.67 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHhhhhhHhHHHHHHHHHh
Q 003403 634 ENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQIQEPINDDLELFKEKVG 687 (823)
Q Consensus 634 ~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~l~~~v~~~~~~~~~~v~ 687 (823)
..++..|. -+..+.+.+..|++.+..-.|..+.+-+++.+-+..++..|-
T Consensus 67 ~~Il~~c~----ei~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L~~~v~ 116 (119)
T d1st6a3 67 REILGTCK----TLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVE 116 (119)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444 444577778888887877667767777777777766555554
No 8
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.04 E-value=1.7e+02 Score=18.68 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 003403 461 AQGTAMGSVYGVI 473 (823)
Q Consensus 461 i~GTvlGav~g~~ 473 (823)
+.|+.+|+++.++
T Consensus 16 ~tg~alg~lypvv 28 (34)
T d2e74d2 16 VTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHH
Confidence 4556666665554
No 9
>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.75 E-value=8.8e+02 Score=20.46 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhcCC-----------CC-CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHH
Q 003403 603 LKSHINELDKFIAEAEMEP-----------NF-WFLPFHGSCYENILASLSRMADLLLFVAYKTEFLSQLSERFGVSWKQ 670 (823)
Q Consensus 603 L~~~L~~L~~ll~~A~~EP-----------~~-w~~pf~~~~y~~l~~~l~rL~d~l~~l~~~l~~L~~~~~~~~~~~~~ 670 (823)
|.+...+|-.+.-.|+.|| +. .++||....-++-. +-.|...+..+...+..+.|....+.|...+
T Consensus 25 LN~sA~~lF~lYytaQGePF~~n~DkLC~Pn~tdFPpFh~n~t~k~k--lVelYri~ayL~aSlgNiTrDQ~~LNP~A~~ 102 (172)
T d1lkia_ 25 LNGSANALFISYYTAQGEPFPNNVEKLCAPNMTDFPSFHGNGTEKTK--LVELYRMVAYLSASLTNITRDQKVLNPTAVS 102 (172)
T ss_dssp HHHHHHHHHHHHHHHHCTTSGGGHHHHTCCCCTTSCCCCTTSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcchHHHHHHHHhhcCCcCCcchhhhcCCCCCCCCCcCCCCchHHH--HHHHHHHHHHHccccccccchHhhhCccHHH
Confidence 3444444444455555554 33 56788764433311 2223233333444566666654455555455
Q ss_pred hhhhhHhHH
Q 003403 671 IQEPINDDL 679 (823)
Q Consensus 671 l~~~v~~~~ 679 (823)
+...+....
T Consensus 103 L~~~L~~T~ 111 (172)
T d1lkia_ 103 LQVKLNATI 111 (172)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHH
Confidence 555444433
No 10
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.26 E-value=6.5e+02 Score=22.63 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=37.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHH--HHHHhhccChhHHHHHH
Q 003403 403 LLPSLESLVFALKCSLSLGLAVILGLMYNK-ENGYWSGL--TIAISFATNRQATFKVA 457 (823)
Q Consensus 403 ~~~~~~~l~~AlK~slA~~LA~~ia~~~~l-~~p~WA~l--Tv~IV~qps~GaT~~k~ 457 (823)
+.|+.-.|..++=..+.++...+.++.+.. ...|||.. |-+.-.-|.+|..+..-
T Consensus 108 k~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~iP~iG~~l~~~ 165 (212)
T d1q90b_ 108 KRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPGVGGFIVEL 165 (212)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGSTTHHHHHHHH
T ss_pred cCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 334555677777777777777788888887 56899873 33333458888776643
Done!