BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003404
(823 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/829 (42%), Positives = 488/829 (58%), Gaps = 36/829 (4%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
MQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW+RE++T
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTT 127
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-GHPVIRK 119
EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G R PV ++
Sbjct: 128 CEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKR 187
Query: 120 PMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIK 179
+ QW L+IT YA WPE VK MQR WIGRSEGAE+ F V + ++++
Sbjct: 188 ELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV-----EGKEVR 242
Query: 180 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 239
I V+TTRPDT+FGAT+LV+APEHP + Y A RK+++ER +EK
Sbjct: 243 IPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREK 302
Query: 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 299
TGVF G YA NPA+GE IPIW ADYVL YGTGAIMAVPAHD RD+EFA KF + I V+
Sbjct: 303 TGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVI 362
Query: 300 -MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 358
P + E+AY G++VNS +G +E KVI W E+ G GK +V
Sbjct: 363 ERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGLGKGRVT 416
Query: 359 YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPEL---DDFTPTGTGEPPL 415
Y+LRDWL +RQRYWG PIP+V + G VP+ E ELP+ LP+L +D P G PL
Sbjct: 417 YRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPKGKS--PL 473
Query: 416 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVD 475
+ +TT G PA+R+T TM + S WYYLR+ DP N + D K W PVD
Sbjct: 474 EAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVD 533
Query: 476 VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSY 535
Y+GG EHAVLHLLY+RF+ K L+D+G+V +EPF+ + QG++L + +V+GS
Sbjct: 534 QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPV-EVEGSV 592
Query: 536 IS-ADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDV 594
+ + T E + ++ E V K G ++ + L A MSKS+GN V
Sbjct: 593 VRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPA-VMSKSKGNGVMVGPF 651
Query: 595 VTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLP----DGTFKG 650
V E GAD R+ +F P + W G++G RFL R++R + G F+
Sbjct: 652 VKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQA 711
Query: 651 GTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHP------ 704
+ + E LH+ + KVTE++E RFNT I+A+MEF+NA Y++ K
Sbjct: 712 EALEGKDR---ELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVY 768
Query: 705 RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKT 764
R I ++ +L P+APH++EELW +SL +P+ + L+ + + +Q+NG+
Sbjct: 769 RTAIRYYLQMLFPFAPHLAEELWHWF-WPDSLFEAGWPELDEKALEKDVVEVAVQVNGRV 827
Query: 765 RGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 813
RGTI + + E A A + L+GK + K IYVPG+ILN+++
Sbjct: 828 RGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV 876
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/829 (42%), Positives = 486/829 (58%), Gaps = 36/829 (4%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
MQGY VLHPMGWDAFGLPAE A++ G HPK T NI + + L+ +G YDW+RE++T
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTT 127
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG-GHPVIRK 119
EP YY+W QWIFL++ ++GLAY+A+ VNWCP TVLANE+VV+G R PV ++
Sbjct: 128 CEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKR 187
Query: 120 PMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIK 179
+ QW L+IT YA WPE VK MQR WIGRSEGAE+ F V + ++++
Sbjct: 188 ELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV-----EGKEVR 242
Query: 180 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 239
I V+TTRPDT+FGAT+LV+APEHP + Y A RK+++ER +EK
Sbjct: 243 IPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREK 302
Query: 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 299
TGVF G YA NPA+GE IPIW ADYVL YGTGAIMAVPAHD RD+EFA KF + I V+
Sbjct: 303 TGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVI 362
Query: 300 -MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 358
P + E+AY G++VNS +G +E KVI W E+ G GK +V
Sbjct: 363 ERPGEPLPEPLERAYEEPGIMVNSGPF------DGTESEEGKRKVIAWLEEKGLGKGRVT 416
Query: 359 YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPEL---DDFTPTGTGEPPL 415
Y+LRDWL +RQRYWG PIP+V + G VP+ E ELP+ LP+L +D P G PL
Sbjct: 417 YRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPKGKS--PL 473
Query: 416 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVD 475
+ +TT G PA+R+T TM + S WYYLR+ DP N + D K W PVD
Sbjct: 474 EAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVD 533
Query: 476 VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSY 535
Y+GG EHAVLHLLY+RF+ K L+D+G+V +EPF+ + QG++L + +V+GS
Sbjct: 534 QYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPV-EVEGSV 592
Query: 536 IS-ADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDV 594
+ + T E + ++ E V K G ++ + L A MSKS+GN V
Sbjct: 593 VRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPA-VMSKSKGNGVMVGPF 651
Query: 595 VTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLP----DGTFKG 650
V E GAD R+ +F P + W G++G RFL R++R + G F+
Sbjct: 652 VKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQA 711
Query: 651 GTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHP------ 704
+ + E LH+ + KVTE++E RFNT I+A+MEF+NA Y++ K
Sbjct: 712 EALEGKDR---ELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVY 768
Query: 705 RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKT 764
R I ++ +L P+APH++EELW +SL +P+ + L+ + + +Q+NG
Sbjct: 769 RTAIRYYLQMLFPFAPHLAEELWHWF-WPDSLFEAGWPELDEKALEKDVVEVAVQVNGAV 827
Query: 765 RGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 813
GTI + + E A A + L+GK + K IYVPG+ILN+++
Sbjct: 828 AGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV 876
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 566 bits (1459), Expect = e-161, Method: Compositional matrix adjust.
Identities = 326/831 (39%), Positives = 477/831 (57%), Gaps = 57/831 (6%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
M G NVL P+GWDAFGLPAE A++ T P T NI + QLK LGF YDW+RE++T
Sbjct: 88 MLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELAT 147
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 120
P YY+W Q F +L K+GL Y+ VNWCP TVLANE+V+DG R V RK
Sbjct: 148 CTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKE 207
Query: 121 MRQWMLKITEYA-XXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIK 179
+ QW +KIT YA WP++VK MQRNWIGRSEG E+ F V D D
Sbjct: 208 IPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDN-----T 262
Query: 180 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXX--XXXNIEEYKNLASRKSDLERTELQK 237
+TVYTTRPDT G TYL VA HP I+E +N ++++
Sbjct: 263 LTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATM---- 318
Query: 238 EKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHS 297
EK GV +G A +P +GE IP+W A++VL YGTGA+MAVP HD RD+EFA K+ ++I
Sbjct: 319 EKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKP 378
Query: 298 VVMPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 356
V++ D S S++A T +G++ NS + NGL + A + + + G G++K
Sbjct: 379 VILAADGSEPDLSQQALTEKGVLFNSG------EFNGLDHEAAFNAIADKLTAMGVGERK 432
Query: 357 VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 416
VNY+LRDW +RQRYWG PIP+V L+ G +P + +LP+ LPE D G P+
Sbjct: 433 VNYRLRDWGVSRQRYWGAPIPMVTLE-DGTVMPTPDDQLPVILPE--DVVMDGITS-PIK 488
Query: 417 KAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDV 476
W +TT +G PA RET T + S WYY R+ P+ + ++D YW PVD+
Sbjct: 489 ADPEWAKTT--VNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDI 546
Query: 477 YVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYI 536
Y+GG EHA++HLLY RF+HK++ D G+V++ EP K ++ QG++L + Y V ++ + +++
Sbjct: 547 YIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWV 606
Query: 537 SADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARA-HKMSKSRGNVVNPDDVV 595
S D + E +++ +++K+ KD L+ KMSKS+ N ++P +V
Sbjct: 607 S--PVDAIVERDEKG----RIVKA------KDAAGHELVYTGMSKMSKSKNNGIDPQVMV 654
Query: 596 TEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVN 655
YGAD++RL+ MF P + W SG+EG +RFL R+W+L+ + T KG
Sbjct: 655 ERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVY-----EHTAKGDVAAL 709
Query: 656 DEEPTLEQLCTL----HKCIAKVTEEIEGTR--FNTGISAMMEFINAAYKWE---KHPRK 706
+ + E L HK IAKVT++I G R FNT I+A+ME +N K + R
Sbjct: 710 NVDALTENQKALRRDVHKTIAKVTDDI-GRRQTFNTAIAAIMELMNKLAKAPTDGEQDRA 768
Query: 707 IIEPFIL----LLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQING 762
+++ +L +L P+ PH+ LW L + +P A+ + + + ++ +Q+NG
Sbjct: 769 LMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVEDSTLVVVQVNG 828
Query: 763 KTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 813
K R I V +EE+ + A + ++K+LDG +++K IYVPG++LN+++
Sbjct: 829 KVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLNLVV 879
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 300 bits (769), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 176/466 (37%), Positives = 261/466 (56%), Gaps = 76/466 (16%)
Query: 356 KVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 415
K+ YKL+DW+FARQRYWGEP PV F D + E + LP +++ P+GTGE PL
Sbjct: 240 KITYKLQDWIFARQRYWGEPFPVYF-DEDNNVYLIDEL---VELPHMENIMPSGTGEGPL 295
Query: 416 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKERY---- 470
+ WVQ +++ K +R+T+TMPQWAGSCWYYL + M ++ L +K+ Y
Sbjct: 296 ATNTEWVQYKKNN--KIFKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLPIDSKKAYEAFS 353
Query: 471 -WSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCK 529
W PVD+Y+GG EHAVLHLLYARFWHK+LYD+ +V TKEPF+ +INQG+ILG+
Sbjct: 354 KWLPVDLYIGGQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGK------- 406
Query: 530 DVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVV 589
DG +S +LG NVV
Sbjct: 407 --DGQKMSK----SLG-----------------------------------------NVV 419
Query: 590 NPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFK 649
NPD+++ +GAD+LR+YEMFMGP D+K WN S +E ++++ R+ R+ + K
Sbjct: 420 NPDEIIQNFGADTLRVYEMFMGPLTDTKKWNESTVEATYKWILRVKRIF--QIFIEDKSK 477
Query: 650 GGTVVNDEEPTLEQLCTLHKCIAK-VTEEIEGTRFNTGISAMMEFINAAYKWEK-HPRKI 707
++ D +Q + H + K +T++IE +FN IS +M F+N+ YK EK + K
Sbjct: 478 INSLHKD-----DQFISEHNLLIKEITQDIEDLKFNIMISKLMIFVNSLYKKEKIYSLKP 532
Query: 708 IEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGT 767
++ F ++ + APH+SEEL LG + ++S+P + + + ++ IQ+NGK R T
Sbjct: 533 LKDFAIMFSTIAPHISEELLESLGEK-EIMFQSWPTYENNKILLTKDIVAIQVNGKLRET 591
Query: 768 IQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 813
++E E+ + A + K L+ K IKK IY+ +ILN I+
Sbjct: 592 FEIENDWDEKRVIEEAKKLPNVKKHLENKIIKKEIYIAKKILNFII 637
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 126/165 (76%), Gaps = 5/165 (3%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
++G++VLHP+GWDAFGLPAEQYA+ +G HP+ TL+NI FR QLKSLGFS+D+ +E++T
Sbjct: 72 LKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIENFRRQLKSLGFSFDYEKEVNT 131
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG-----VSERGGHP 115
+P+YY+WTQWIF Q+ K+GLA EV VNWCP LGTVLANEE+V+ VSERG P
Sbjct: 132 TDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEIVENDKGEMVSERGSFP 191
Query: 116 VIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSE 160
V +KPM+QW+LKIT YA WP+S+K++Q NWIG+ E
Sbjct: 192 VYKKPMKQWVLKITNYADRLLEDLNLLDWPDSLKKLQTNWIGKEE 236
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/228 (42%), Positives = 131/228 (57%), Gaps = 32/228 (14%)
Query: 157 GRSEGAEMDFRV----------------LDSDGQERDIKITVYTTRPDTIFGATYLVVAP 200
GRSEGA + F V ++ +E+ I I V+TTRPDT+FGAT++V+AP
Sbjct: 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAP 60
Query: 201 EHPXXXXXXX------XXXXXNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 254
EHP ++E + + S ERT ++++K GVF G YA NPA+G
Sbjct: 61 EHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERT-MEEDKEGVFLGVYATNPANG 119
Query: 255 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK-AY 313
E IP+W A+YVL YGTGAIM VPAHD RD EFA K+D+ I VV P E + EK AY
Sbjct: 120 EKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKP--EGAWDFEKGAY 177
Query: 314 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 361
G+G +VNS +GL + A K+ EW + G G+KKV+Y+L
Sbjct: 178 EGKGTLVNSDGF------DGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 116/191 (60%), Gaps = 16/191 (8%)
Query: 174 QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXX------XXXXXNIEEYKNLASRK 227
+E+ I I V+TTRPDT+FGAT++V+APEHP ++E + +
Sbjct: 40 KEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKM 99
Query: 228 SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF 287
S ERT ++++K GVF G YA NPA+GE IP+W A+YVL YGTGAIM VPAHD RD EF
Sbjct: 100 STRERT-MEEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEF 158
Query: 288 ALKFDISIHSVVMPDDESSSQSEK-AYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEW 346
A K+D+ I VV P E + EK AY G+G +VNS +GL + A K+ EW
Sbjct: 159 AKKYDLPIKVVVKP--EGAWDFEKGAYEGKGTLVNSDGF------DGLDSETAKRKITEW 210
Query: 347 AEKTGNGKKKV 357
+ G G+KKV
Sbjct: 211 LQDRGLGEKKV 221
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 121/206 (58%), Gaps = 20/206 (9%)
Query: 159 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXX------XX 212
+EGA + F V E I I V+TTRPDT+FGAT++V+APEHP
Sbjct: 9 AEGALIRFYV----EIEELIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNA 64
Query: 213 XXXNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTG 272
++E + + S ERT ++++K GVF G YA NPA+GE IP+W A+YVL YGTG
Sbjct: 65 CYSDVENFVEKMKKMSTRERT-MEEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTG 123
Query: 273 AIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEK-AYTGEGLIVNSSNLISGLDI 331
AIM VPAHD RD EFA K+D+ I VV P E + EK AY G+G +VNS
Sbjct: 124 AIMCVPAHDQRDWEFAKKYDLPIKVVVKP--EGAWDFEKGAYEGKGTLVNSDGF------ 175
Query: 332 NGLSCQEATSKVIEWAEKTGNGKKKV 357
+GL + A K+ EW + G G+KKV
Sbjct: 176 DGLDSETAKRKITEWLQDRGLGEKKV 201
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 127 bits (319), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/201 (38%), Positives = 110/201 (54%), Gaps = 18/201 (8%)
Query: 160 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXN--I 217
EG E+ F V D D +TVYTTRPDT G TYL VA HP I
Sbjct: 11 EGVEITFNVNDYDNT-----LTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFI 65
Query: 218 EEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAV 277
+E +N ++++ E K GV +G A +P +GE IP+W A++VL YGTGA+MAV
Sbjct: 66 DECRNTKVAEAEMATME----KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAV 121
Query: 278 PAHDTRDHEFALKFDISIHSVVMPDDESSSQ-SEKAYTGEGLIVNSSNLISGLDINGLSC 336
P HD RD+EFA K+ ++I V++ D S S++A T +G++ NS + NGL
Sbjct: 122 PGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG------EFNGLDH 175
Query: 337 QEATSKVIEWAEKTGNGKKKV 357
+ A + + + G G++KV
Sbjct: 176 EAAFNAIADKLTAMGVGERKV 196
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 144/681 (21%), Positives = 223/681 (32%), Gaps = 217/681 (31%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGT-HPKITT-----------LRNINRFRTQLKSL 48
MQG+ + GWD GLP EQ + G K++T L I + + L
Sbjct: 83 MQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRL 142
Query: 49 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV 108
G D+N T++P Y IF ++ +GL Y+ + PV W P+ + LA E+
Sbjct: 143 GVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEI---- 198
Query: 109 SERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRNWIGRSEGAEMDFRV 168
EY RS + F V
Sbjct: 199 ---------------------EYHDK-----------------------RSASIYVAFNV 214
Query: 169 LDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRK 227
D G + D K ++TT P TI + V PE E + +
Sbjct: 215 KDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEA 274
Query: 228 SDLERT--ELQKEKTGV-FSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRD 284
D ++ +L+KE TG A++P + D+V GTG + P H D
Sbjct: 275 LDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDD 334
Query: 285 HEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL------------------- 325
+ ++++ V+ P D+ +E+ EG+ + +N
Sbjct: 335 YIVGQQYEL---PVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFIT 391
Query: 326 ------------------------ISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 361
IS + + L E T+ + W GK ++ +
Sbjct: 392 HSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW------GKTRIYNMV 445
Query: 362 RD---WLFARQRYWGEPIPVVFLDG-----TGETVPLHEAELPLTL-------PELDDFT 406
RD W+ +RQR WG P+PV + + T ETV H A+L E D
Sbjct: 446 RDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVN-HVADLFAEHGSNIWFEREAKDLL 504
Query: 407 PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKT 466
P G P S +ET M W D +S V +T
Sbjct: 505 PEGFTHPG-------------SPNGTFTKETDIMDVW----------FDSGSSHRGVLET 541
Query: 467 KERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTK-EPFKCVINQGIILGEMQY 525
+ P D+Y+ G++ R W V + P+K +++ G ++
Sbjct: 542 RPELSFPADMYLEGSDQ-------YRGWFNSSITTSVATRGVSPYKFLLSHGFVM----- 589
Query: 526 MVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSR 585
D +G +S KS
Sbjct: 590 ----DGEGKKMS---------------------------------------------KSL 600
Query: 586 GNVVNPDDVVTEYGADSLRLY 606
GNV+ PD VV + GAD RL+
Sbjct: 601 GNVIVPDQVVKQKGADIARLW 621
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 578 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRL 637
KMSKS+GNV+N D + E GAD +RLY M + W + + + + R + L
Sbjct: 648 GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYEL 707
Query: 638 IVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAA 697
I S + KG + D + + L L+K I + T +E R T + I
Sbjct: 708 I--SQFAEYEVKGNVELKDIDRWM--LHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND 763
Query: 698 YKWEKHP-------------RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPK 743
+W R + + ++ L+AP+ PH+ EELW +LG ++ +P+
Sbjct: 764 LRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGEGFVSLAKWPE 822
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 141/391 (36%), Gaps = 100/391 (25%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYA--IETGTHPKITTLRN---------------INRFRT 43
MQGYNVL PM W G P A I+ I R+ IN +
Sbjct: 69 MQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKY 128
Query: 44 QLKSL-------GFSYDWNREIST--IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 94
+K+ GFS DW+RE T + P + K+ +W F +L ++G
Sbjct: 129 FMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGY------------- 175
Query: 95 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRN 154
+V G PV+ P+ L
Sbjct: 176 ---------IVKGAHRVRWDPVVGTPLGDHDL---------------------------- 198
Query: 155 WIGRSEGAE---MDFRVLDSDGQERD--IKITVYTTRPDTIFGATYLVVAPEHPXXXXXX 209
EG + +D+ ++ + +E I + T RP+T++G T + V P
Sbjct: 199 ----MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKV 254
Query: 210 XXXXXXNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVL 266
A+ K D E +++ K G Y RNP SG+ + I A++V
Sbjct: 255 RRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVD 314
Query: 267 GSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLI 326
TG +M+VPAH DH V + D + ++ + Y + IV + I
Sbjct: 315 PDNATGVVMSVPAHAPFDH------------VALEDLKRETEILEKYDIDPRIVENITYI 362
Query: 327 SGLDINGLSCQEATSKVIEWAEKTGNGKKKV 357
S + + G A +V + K+ K+K+
Sbjct: 363 SLIKLEGYGDFPAVEEVNKLGIKSQKDKEKL 393
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 578 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRL 637
KMSKS+GNV+N D + E GAD +RLY M + W + + + + R + L
Sbjct: 648 GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYEL 707
Query: 638 IVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAA 697
I S + KG + D + + L L+K I + T +E R T + I
Sbjct: 708 I--SQFAEYEVKGNVELKDIDRWM--LHRLNKAIKETTNALEEFRTRTAVQWAFYSIMND 763
Query: 698 YKWEKHP-------------RKIIEPFILLLAPYAPHMSEELWFRLG 731
+W R + + ++ L+AP+ PH+ EELW +LG
Sbjct: 764 LRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 141/391 (36%), Gaps = 100/391 (25%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYA--IETGTHPKITTLRN---------------INRFRT 43
MQGYNVL PM W G P A I+ I R+ IN +
Sbjct: 69 MQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKY 128
Query: 44 QLKSL-------GFSYDWNREIST--IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 94
+K+ GFS DW+RE T + P + K+ +W F +L ++G
Sbjct: 129 FMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGY------------- 175
Query: 95 LGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYAXXXXXXXXXXXWPESVKEMQRN 154
+V G PV+ P+ L
Sbjct: 176 ---------IVKGAHRVRWDPVVGTPLGDHDL---------------------------- 198
Query: 155 WIGRSEGAE---MDFRVLDSDGQERD--IKITVYTTRPDTIFGATYLVVAPEHPXXXXXX 209
EG + +D+ ++ + +E I + T RP+T++G T + V P
Sbjct: 199 ----MEGEDVPILDYIIIKFELRENGEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKV 254
Query: 210 XXXXXXNIEEYKNLASRK---SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVL 266
A+ K D E +++ K G Y RNP SG+ + I A++V
Sbjct: 255 RRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVD 314
Query: 267 GSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLI 326
TG +M+VPAH DH V + D + ++ + Y + IV + I
Sbjct: 315 PDNATGVVMSVPAHAPFDH------------VALEDLKRETEILEKYDIDPRIVENITYI 362
Query: 327 SGLDINGLSCQEATSKVIEWAEKTGNGKKKV 357
S + + G A +V + K+ K+K+
Sbjct: 363 SLIKLEGYGDFPAVEEVNKLGIKSQKDKEKL 393
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 574 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGI-EGVHRFLG 632
L + KMSKS+GNVV+P D++ ++GAD+LR Y P + + + + E V +
Sbjct: 585 LDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFL 644
Query: 633 RMWRL----IVGSSLPDGTFKGGTVVNDEEPTLEQ--LCTLHKCIAKVTEEIEGTRFNTG 686
+W + + ++L K ++ P +++ L + I +VTE +E T
Sbjct: 645 TLWNVYSFFVTYANLDRPDLKNPP-PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTS 703
Query: 687 ISAMMEFI-----------NAAYKW--------EKHPRKIIEPFIL---LLAPYAPHMSE 724
A+ +F+ N W E + E +L L AP+ P ++E
Sbjct: 704 ARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAE 763
Query: 725 ELW------FRLGHSNSLAYESFPKANPDYLKDSTIV 755
LW RL S+ +P+A+P L D +V
Sbjct: 764 VLWQNLVRSVRLEAKESVHLADWPEADPA-LADEALV 799
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 24/144 (16%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNIN-----RFRTQLKSLGFSY--- 52
M+GY GWD GLP E +E + + R I RF + F+Y
Sbjct: 73 MRGYYAPRRAGWDTHGLPVE---LEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKE 129
Query: 53 ------------DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLA 100
D +T+EP Y + W L RGL Y+ V +CP GT L+
Sbjct: 130 WEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLS 189
Query: 101 NEEVVDGVSERGGHPV-IRKPMRQ 123
+ EV G E V +R P+++
Sbjct: 190 SHEVALGYKEIQDPSVYVRFPLKE 213
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 361 LRDWLFARQRYWGEPIPVVFLDGTGE 386
L DW +R RYWG P+P+ G+
Sbjct: 441 LVDWALSRNRYWGTPLPIWVCQACGK 466
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 44 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEE 103
QLK LG S DW+RE T++ + ++ F + GLAY+A VNWCP T L++ E
Sbjct: 128 QLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE 187
Query: 104 V 104
V
Sbjct: 188 V 188
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 30/193 (15%)
Query: 574 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGR 633
L + KMSKS+GNV++P ++V YGAD+LR +++ + +E F +
Sbjct: 522 LDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANK 581
Query: 634 MW---RLIVGSSLPDGTFKGGTVVNDEEPTL-------------EQLCTLHKC--IAKVT 675
++ R ++ S + G ++ PTL E++ L++ +A+
Sbjct: 582 LYNAARFVLLS-------REGFQAKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAA 634
Query: 676 EEIEGTRFNTGISAMMEFINAAYKW-EKHPRKIIEP----FILLLAPYAPHMSEELWFRL 730
E+ ++ +E A K H + +E + LL P P ++ EL+ L
Sbjct: 635 REVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQAL 694
Query: 731 GHSNSLAYESFPK 743
LA E++P+
Sbjct: 695 TGKEELALEAWPE 707
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 96/452 (21%), Positives = 162/452 (35%), Gaps = 125/452 (27%)
Query: 180 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 239
I + T RP+T+F + V PE E Y++L ++
Sbjct: 210 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 242
Query: 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 299
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 243 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 294
Query: 300 ----------MPDD-------ESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSK 342
+P+ E+ ++ + + G +V + L C
Sbjct: 295 NLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCS-RCGTPIEY 353
Query: 343 VI--EW-------AEKTGNGK------------KKVNY----KLRDWLFARQRYWGEPIP 377
I +W AE+ G KKVN ++DW +RQ +WG IP
Sbjct: 354 AIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIP 413
Query: 378 VVFL-DGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRE 436
+ D VP E L D + G P L +R+
Sbjct: 414 AWYCEDCQAVNVPRPERYLE------DPTSCEACGSPRL------------------KRD 449
Query: 437 TSTMPQWAGSCWYYLRFMD-PKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWH 495
W S + L + P+ +++L + + P DV V G + +L L +R
Sbjct: 450 EDVFDTWFSSALWPLSTLGWPEETEDL------KAFYPGDVLVTG--YDILFLWVSRMEV 501
Query: 496 KVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEE 555
+ +G + PFK V+ G++L E + K G+ I D + + Y ++
Sbjct: 502 SGYHFMG----ERPFKTVLLHGLVLDEKGQKMSKS-KGNVI--DPLEMVERYGADA---- 550
Query: 556 KVMKSGDFFVMKDNPNIRLIARAHKMSKSRGN 587
++ ++ +IRL R +M+++ N
Sbjct: 551 --LRFALIYLATGGQDIRLDLRWLEMARNFAN 580
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
++ Y+V G D GL ++ A E G PK RN RF+ + L Y + I T
Sbjct: 40 LRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWEFLKIEY--TKFIRT 97
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWC 92
+P + K+ Q +F + KRG Y E +C
Sbjct: 98 TDPYHVKFVQKVFEECYKRGDIYLGEYEGWYC 129
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 580 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF-------LG 632
KMSK+ GNVV+P +VV EYG D +R + + PF ++ I ++R +G
Sbjct: 295 KMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI--LNRINGELANEIG 352
Query: 633 RMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMME 692
++ +V + F GG V + ++ + I +E F I +++
Sbjct: 353 NLYSRVVNMA---HKFLGGEVSGARDEEYAKIA--QESIKNYENYMEKVNFYKAIEEILK 407
Query: 693 FINAAYKW--EKHP 704
F + K+ EK P
Sbjct: 408 FTSYLNKYVDEKQP 421
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
+ GY G D G + A G PK R RF+ LG +YD I T
Sbjct: 38 LDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRT 95
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 120
E + K Q + ++ + G Y E +C + +E+V+G+ G PV R+
Sbjct: 96 TEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRK 155
Query: 121 MRQWMLKITEY 131
+ ++ +Y
Sbjct: 156 EGNYFFRMEKY 166
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 610
IP + + G F + D KMSK+ GNVV+P ++ +YG D+LR Y +
Sbjct: 277 GIPMYRHLNVGGFLLGPDG---------RKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 611 GPF 613
P+
Sbjct: 328 IPY 330
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
+ GY G D G + A G PK R RF+ LG +YD I T
Sbjct: 38 LDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRT 95
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 120
E + K Q + ++ + G Y E +C + +E+V+G+ G PV R+
Sbjct: 96 TEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRK 155
Query: 121 MRQWMLKITEY 131
+ ++ +Y
Sbjct: 156 EGNYFFRMEKY 166
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 610
IP + + G F + D KMSK+ GNVV+P ++ +YG D+LR Y +
Sbjct: 277 GIPMYRHLNVGGFLLGPDG---------RKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 611 GPF 613
P+
Sbjct: 328 IPY 330
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREIST 60
+ GY G D G + A G PK R RF+ LG +YD I T
Sbjct: 38 LDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRT 95
Query: 61 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 120
E + K Q + ++ + G Y E +C + +E+V+G+ G PV R+
Sbjct: 96 TEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRK 155
Query: 121 MRQWMLKITEY 131
+ ++ +Y
Sbjct: 156 EGNYFFRMEKY 166
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 610
IP + + G F + D KMSK+ GNVV+P ++ +YG D+LR Y +
Sbjct: 277 GIPMYRHLNVGGFLLGPDG---------RKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 611 GPF 613
P+
Sbjct: 328 IPY 330
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 574 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG 626
L+ R KMSKS GNVV+P ++V +G D +R + + PF ++N I G
Sbjct: 304 LLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIG 356
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 574 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGI 624
L R KMSKS GNV++P ++V YG D LR + M PF +++ I
Sbjct: 315 LFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAI 365
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 52/180 (28%)
Query: 180 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 239
I + T RP+T+F + V PE E Y++L ++
Sbjct: 19 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 51
Query: 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 299
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 52 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 103
Query: 300 MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 359
+ E + E+ + GL EA K +E + G+ K+ +Y
Sbjct: 104 --NLEGRMEGERVPEA---------------LRGLDRFEARRKAVELFREAGHLVKEEDY 146
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 52/180 (28%)
Query: 180 ITVYTTRPDTIFGATYLVVAPEHPXXXXXXXXXXXXNIEEYKNLASRKSDLERTELQKEK 239
I + T RP+T+F + V PE E Y++L ++
Sbjct: 19 IEIATVRPETVFADQAIAVHPED---------------ERYRHLLGKR------------ 51
Query: 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 299
AR P + IPI V +GTGA+ PAHD D+E + + SV+
Sbjct: 52 --------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVI 103
Query: 300 MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 359
+ E + E+ + GL EA K +E + G+ K+ +Y
Sbjct: 104 --NLEGRMEGERVPEA---------------LRGLDRFEARRKAVELFREAGHLVKEEDY 146
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 522 EMQYMVCKDVDGSY-ISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHK 580
E M CK + + I +D + + + I + G + + + ++ R K
Sbjct: 208 ECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDR-EK 266
Query: 581 MSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVG 640
MSKS GN DV+ Y A+++R Y + G +R ++ ++ L R++ + G
Sbjct: 267 MSKSLGNFFTVRDVLKYYDAETVR-YFLMSGHYRSQLNYSEENLKQARAALERLYTALRG 325
Query: 641 S 641
+
Sbjct: 326 T 326
>pdb|3MV2|B Chain B, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|D Chain D, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|F Chain F, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 310
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 399 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKN 458
L E++ F+ KA + + ++ S P + + Y++F+D KN
Sbjct: 33 LQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLD-------LYVQFLDTKN 85
Query: 459 SKELVDKTKERYWSPVDVYVGGAEHAVL 486
+EL + K++ SP ++Y+ A+L
Sbjct: 86 IEELENLLKDKQNSPYELYLLATAQAIL 113
>pdb|3MV3|B Chain B, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|D Chain D, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|F Chain F, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 310
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 399 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKN 458
L E++ F+ KA + + ++ S P + + Y++F+D KN
Sbjct: 33 LQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLD-------LYVQFLDTKN 85
Query: 459 SKELVDKTKERYWSPVDVYVGGAEHAVL 486
+EL + K++ SP ++Y+ A+L
Sbjct: 86 IEELENLLKDKQNSPYELYLLATAQAIL 113
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 579 HKMSKSRGNVVNPDDVVTEYGAD--SLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR 636
HKMSKSRGN+V + + G D ++RL +F G +R+ + W+ ++ + L R WR
Sbjct: 290 HKMSKSRGNLVLVSQLRAQ-GVDPSAIRL-GLFSGHYREDRFWSNEVLDEANARLAR-WR 346
Query: 637 LIVGSSLPDG 646
++LP+
Sbjct: 347 --SATALPEA 354
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 558 MKSGDFFVMKDNPNIRLI----------ARAHKMSKSRGNVVNPDDVVTEYGADSLR 604
MK+ F+ D+ N+ +I +KMSK GN + DVV E G+D+LR
Sbjct: 253 MKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALR 309
>pdb|3ZX6|A Chain A, Structure Of Hamp(Af1503)-Tsr Fusion - Hamp (A291v) Mutant
pdb|3ZX6|B Chain B, Structure Of Hamp(Af1503)-Tsr Fusion - Hamp (A291v) Mutant
Length = 341
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 649 KGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 702
+GG VV++ T+ + T + IA + I+G F T I A+ + AA E+
Sbjct: 126 RGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ 179
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 580 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRM 634
K+SKS GN +P + E+G D+L+ + M F+D ++ + V R G +
Sbjct: 339 KISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNM--VARLNGEL 391
>pdb|1QU7|A Chain A, Four Helical-Bundle Structure Of The Cytoplasmic Domain Of
A Chemotaxis Receptor
pdb|1QU7|B Chain B, Four Helical-Bundle Structure Of The Cytoplasmic Domain Of
A Chemotaxis Receptor
Length = 227
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 649 KGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 702
+GG VV++ T+ + T + IA + I+G F T I A+ + AA E+
Sbjct: 46 RGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ 99
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 580 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRD 615
K+SKS GNV +P + E+G D+L+ + + F D
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 580 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRD 615
K+SKS GNV +P + E+G D+L+ + + F D
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 580 KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRD 615
K+SKS GNV +P + E+G D+L+ + + F D
Sbjct: 323 KISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSD 358
>pdb|2DT8|A Chain A, Fatty Acid Binding Of A Degv Family Protein From Thermus
Thermophilus
Length = 280
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 739 ESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSI 798
E F + + L+++ VL + I+GK GT+Q E ++E ++ +D + + G +
Sbjct: 67 EDFARVYREALEEADHVLSLHISGKLSGTVQSAELAAQEFPGRVTVVDTQAASLGVGXXV 126
Query: 799 --KKRIYVPGRILNVIL 813
K + G+ L +L
Sbjct: 127 LRAKELLEEGQSLEAVL 143
>pdb|3DTT|A Chain A, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24 At
1.70 A Resolution
pdb|3DTT|B Chain B, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24 At
1.70 A Resolution
Length = 245
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 540 STDTLGEYEQESIPEEKVMKS-----------------GDFFVMKDNPNIRLIARAHKMS 582
+TD+LGE Q + PE KV+K+ GD V + A +
Sbjct: 141 NTDSLGEQIQRTFPEAKVVKTLNTXNASLXVDPGRAAGGDHSVFVSGNDAAAKAEVATLL 200
Query: 583 KSRG--NVVNPDDVVTEYGADSL 603
KS G +V++ D+ T GA+ L
Sbjct: 201 KSLGHQDVIDLGDITTARGAEXL 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,093,861
Number of Sequences: 62578
Number of extensions: 1160889
Number of successful extensions: 2802
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2687
Number of HSP's gapped (non-prelim): 64
length of query: 823
length of database: 14,973,337
effective HSP length: 107
effective length of query: 716
effective length of database: 8,277,491
effective search space: 5926683556
effective search space used: 5926683556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)