Query 003404
Match_columns 823
No_of_seqs 304 out of 2553
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 22:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02563 aminoacyl-tRNA ligase 100.0 2E-189 4E-194 1691.3 70.2 818 1-820 146-963 (963)
2 KOG0435 Leucyl-tRNA synthetase 100.0 5E-182 1E-186 1472.5 43.8 760 1-819 92-872 (876)
3 TIGR00396 leuS_bact leucyl-tRN 100.0 1E-170 3E-175 1528.6 65.3 773 1-814 64-842 (842)
4 COG0495 LeuS Leucyl-tRNA synth 100.0 2E-166 4E-171 1440.1 54.8 734 1-813 69-814 (814)
5 PRK00390 leuS leucyl-tRNA synt 100.0 2E-160 4E-165 1438.4 62.7 733 1-814 67-805 (805)
6 COG0060 IleS Isoleucyl-tRNA sy 100.0 1E-120 2E-125 1064.7 33.6 618 1-749 84-800 (933)
7 PRK06039 ileS isoleucyl-tRNA s 100.0 6E-114 1E-118 1055.7 44.3 598 1-750 76-793 (975)
8 PRK05743 ileS isoleucyl-tRNA s 100.0 3E-113 7E-118 1041.6 42.4 595 1-749 84-789 (912)
9 COG0525 ValS Valyl-tRNA synthe 100.0 3E-112 6E-117 981.4 45.2 552 1-751 68-718 (877)
10 TIGR00392 ileS isoleucyl-tRNA 100.0 7E-111 2E-115 1025.2 42.0 615 1-750 71-812 (861)
11 PRK13804 ileS isoleucyl-tRNA s 100.0 6E-111 1E-115 1023.3 40.7 617 1-749 89-827 (961)
12 PTZ00427 isoleucine-tRNA ligas 100.0 8E-109 2E-113 1008.2 42.5 623 1-748 137-948 (1205)
13 PTZ00419 valyl-tRNA synthetase 100.0 1E-108 3E-113 1013.1 44.3 580 1-749 95-826 (995)
14 PLN02882 aminoacyl-tRNA ligase 100.0 8E-108 2E-112 1004.6 44.1 624 1-751 73-825 (1159)
15 PRK13208 valS valyl-tRNA synth 100.0 9E-108 2E-112 989.9 42.2 557 1-750 73-723 (800)
16 PRK14900 valS valyl-tRNA synth 100.0 1E-106 3E-111 991.3 45.5 540 1-746 83-736 (1052)
17 PLN02381 valyl-tRNA synthetase 100.0 2E-106 5E-111 986.6 44.2 572 1-750 163-896 (1066)
18 PLN02843 isoleucyl-tRNA synthe 100.0 1E-106 3E-111 984.4 41.6 622 1-749 67-820 (974)
19 PLN02943 aminoacyl-tRNA ligase 100.0 1E-105 2E-110 977.1 45.0 560 1-745 123-785 (958)
20 PRK05729 valS valyl-tRNA synth 100.0 3E-104 7E-109 964.5 44.9 539 1-748 71-712 (874)
21 TIGR00422 valS valyl-tRNA synt 100.0 6E-104 1E-108 963.0 46.0 548 1-750 68-719 (861)
22 KOG0433 Isoleucyl-tRNA synthet 100.0 4E-104 8E-109 869.8 29.6 616 1-750 90-816 (937)
23 PRK12300 leuS leucyl-tRNA synt 100.0 8E-102 2E-106 940.3 38.5 598 1-750 21-750 (897)
24 TIGR00395 leuS_arch leucyl-tRN 100.0 1.2E-97 3E-102 907.5 39.9 601 1-749 60-795 (938)
25 PLN02959 aminoacyl-tRNA ligase 100.0 6.5E-96 1E-100 897.6 42.4 607 1-745 80-893 (1084)
26 PF00133 tRNA-synt_1: tRNA syn 100.0 5E-97 1E-101 868.1 19.8 470 1-620 58-601 (601)
27 KOG0432 Valyl-tRNA synthetase 100.0 1.7E-89 3.7E-94 769.4 33.7 560 1-748 110-829 (995)
28 KOG0434 Isoleucyl-tRNA synthet 100.0 9.6E-87 2.1E-91 724.0 35.4 623 1-751 73-814 (1070)
29 PRK12267 methionyl-tRNA synthe 100.0 3.2E-67 7E-72 623.1 27.7 407 1-733 39-479 (648)
30 cd00817 ValRS_core catalytic c 100.0 5.5E-67 1.2E-71 582.6 19.3 327 1-619 36-382 (382)
31 PRK12268 methionyl-tRNA synthe 100.0 1.8E-65 3.8E-70 600.7 27.9 420 1-745 39-522 (556)
32 PLN02610 probable methionyl-tR 100.0 4.9E-65 1.1E-69 605.6 28.1 407 1-733 53-533 (801)
33 PLN02224 methionine-tRNA ligas 100.0 1.5E-64 3.4E-69 585.0 27.7 406 1-733 104-547 (616)
34 PRK00133 metG methionyl-tRNA s 100.0 8.5E-64 1.8E-68 594.3 28.3 407 1-733 37-504 (673)
35 COG0143 MetG Methionyl-tRNA sy 100.0 2.4E-63 5.3E-68 562.0 28.6 404 1-737 40-517 (558)
36 TIGR00398 metG methionyl-tRNA 100.0 1.6E-63 3.6E-68 580.8 27.4 407 1-733 34-504 (530)
37 PRK11893 methionyl-tRNA synthe 100.0 3E-61 6.6E-66 561.0 29.2 406 1-733 36-477 (511)
38 KOG0436 Methionyl-tRNA synthet 100.0 7E-57 1.5E-61 469.1 29.8 412 1-733 74-528 (578)
39 cd00818 IleRS_core catalytic c 100.0 1.5E-56 3.3E-61 490.9 20.1 284 1-619 36-338 (338)
40 KOG0437 Leucyl-tRNA synthetase 100.0 2.1E-51 4.5E-56 451.6 22.8 561 42-746 189-884 (1080)
41 cd00812 LeuRS_core catalytic c 100.0 3.7E-50 8.1E-55 436.7 17.1 270 1-620 35-313 (314)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 7.7E-51 1.7E-55 452.0 10.7 307 1-629 34-376 (391)
43 cd00814 MetRS_core catalytic c 100.0 7.9E-49 1.7E-53 427.9 18.5 280 1-619 35-319 (319)
44 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.5E-48 3.2E-53 425.2 17.5 113 1-142 35-160 (312)
45 PF13603 tRNA-synt_1_2: Leucyl 100.0 5.2E-41 1.1E-45 330.5 16.8 183 153-348 1-185 (185)
46 KOG1247 Methionyl-tRNA synthet 100.0 3.3E-39 7.1E-44 336.5 14.8 409 1-736 50-524 (567)
47 PRK00260 cysS cysteinyl-tRNA s 100.0 1.1E-30 2.4E-35 297.5 17.9 155 472-701 219-374 (463)
48 PTZ00399 cysteinyl-tRNA-synthe 100.0 3.3E-28 7.1E-33 284.7 17.3 164 472-701 267-436 (651)
49 PRK12418 cysteinyl-tRNA synthe 100.0 1.9E-27 4.2E-32 260.4 18.5 91 1-95 43-138 (384)
50 TIGR00435 cysS cysteinyl-tRNA 99.9 2.1E-27 4.6E-32 269.9 15.7 93 1-96 55-148 (465)
51 TIGR03447 mycothiol_MshC cyste 99.9 8E-26 1.7E-30 248.5 22.0 90 1-94 70-164 (411)
52 PRK14535 cysS cysteinyl-tRNA s 99.9 2E-26 4.3E-31 262.4 15.9 92 1-95 282-374 (699)
53 PLN02946 cysteine-tRNA ligase 99.9 3E-26 6.5E-31 260.3 16.6 92 1-95 114-205 (557)
54 PRK14536 cysS cysteinyl-tRNA s 99.9 5.9E-25 1.3E-29 247.6 19.7 91 1-94 57-157 (490)
55 PRK14534 cysS cysteinyl-tRNA s 99.9 2.6E-23 5.6E-28 233.0 18.9 92 1-95 55-156 (481)
56 cd00672 CysRS_core catalytic c 99.8 9.8E-21 2.1E-25 193.3 8.9 58 1-60 54-112 (213)
57 COG0215 CysS Cysteinyl-tRNA sy 99.8 1.2E-19 2.6E-24 199.1 13.4 150 473-699 221-373 (464)
58 cd00674 LysRS_core_class_I cat 99.7 1.2E-16 2.7E-21 173.9 13.1 80 1-83 53-150 (353)
59 PF01406 tRNA-synt_1e: tRNA sy 99.7 3.5E-17 7.7E-22 171.5 8.3 90 2-94 43-133 (300)
60 PRK01611 argS arginyl-tRNA syn 99.7 1.6E-15 3.5E-20 175.8 19.3 81 1-83 146-226 (507)
61 PRK00750 lysK lysyl-tRNA synth 99.6 9.7E-15 2.1E-19 168.0 11.6 80 1-83 57-156 (510)
62 cd07961 Anticodon_Ia_Ile_ABEc 99.5 2.1E-14 4.5E-19 144.5 10.8 129 619-748 1-163 (183)
63 KOG2007 Cysteinyl-tRNA synthet 99.5 1.1E-14 2.3E-19 157.7 6.3 190 442-700 230-423 (586)
64 cd07959 Anticodon_Ia_Leu_AEc A 99.4 5.3E-13 1.2E-17 123.9 9.8 107 619-730 1-117 (117)
65 cd07958 Anticodon_Ia_Leu_BEm A 99.4 9.8E-13 2.1E-17 121.9 10.7 110 619-730 1-117 (117)
66 cd07960 Anticodon_Ia_Ile_BEm A 99.4 2E-12 4.3E-17 129.8 11.8 126 620-748 2-160 (180)
67 PF08264 Anticodon_1: Anticodo 99.2 5E-11 1.1E-15 116.2 10.1 89 660-749 1-115 (153)
68 cd07962 Anticodon_Ia_Val Antic 99.1 2.5E-10 5.4E-15 108.9 11.0 112 619-730 1-135 (135)
69 cd07957 Anticodon_Ia_Met Antic 99.1 3.9E-10 8.4E-15 106.4 12.1 105 622-730 4-129 (129)
70 TIGR00456 argS arginyl-tRNA sy 99.1 9.9E-10 2.1E-14 129.2 14.1 123 578-701 370-523 (566)
71 TIGR00467 lysS_arch lysyl-tRNA 98.6 2.1E-08 4.6E-13 115.1 5.2 60 577-638 271-330 (515)
72 cd00671 ArgRS_core catalytic c 98.4 6.7E-07 1.4E-11 92.2 6.9 90 1-95 35-124 (212)
73 cd07375 Anticodon_Ia_like Anti 98.3 3.3E-06 7.2E-11 77.6 8.9 98 622-719 2-117 (117)
74 PRK12451 arginyl-tRNA syntheta 98.2 7.4E-06 1.6E-10 96.4 12.6 117 578-701 369-521 (562)
75 COG0018 ArgS Arginyl-tRNA synt 98.0 5.8E-05 1.3E-09 88.0 12.8 120 578-701 381-534 (577)
76 PLN02286 arginine-tRNA ligase 97.7 0.00019 4.1E-09 84.7 12.4 120 578-701 376-536 (576)
77 PF01921 tRNA-synt_1f: tRNA sy 97.5 6.4E-05 1.4E-09 81.8 3.9 50 578-628 280-330 (360)
78 COG1384 LysS Lysyl-tRNA synthe 97.2 0.00029 6.3E-09 79.0 4.8 43 578-620 275-318 (521)
79 PLN02882 aminoacyl-tRNA ligase 96.0 0.005 1.1E-07 78.2 4.0 77 66-156 383-461 (1159)
80 PF00750 tRNA-synt_1d: tRNA sy 95.9 0.0029 6.2E-08 70.5 0.9 27 578-604 285-312 (354)
81 cd00802 class_I_aaRS_core cata 95.7 0.011 2.3E-07 57.0 4.1 46 1-46 32-77 (143)
82 PRK06039 ileS isoleucyl-tRNA s 95.6 0.011 2.3E-07 74.6 4.4 78 66-157 362-441 (975)
83 PTZ00427 isoleucine-tRNA ligas 95.5 0.015 3.1E-07 74.0 5.3 100 67-186 488-589 (1205)
84 PRK14900 valS valyl-tRNA synth 95.4 0.015 3.2E-07 73.6 5.1 79 65-157 330-411 (1052)
85 TIGR00392 ileS isoleucyl-tRNA 95.1 0.025 5.4E-07 70.7 5.6 77 67-157 381-458 (861)
86 TIGR00422 valS valyl-tRNA synt 95.0 0.023 5E-07 70.8 5.0 78 66-157 314-394 (861)
87 PRK05729 valS valyl-tRNA synth 95.0 0.027 5.9E-07 70.2 5.4 77 67-157 317-396 (874)
88 PRK13208 valS valyl-tRNA synth 93.8 0.083 1.8E-06 65.4 5.8 77 67-157 315-392 (800)
89 PLN02943 aminoacyl-tRNA ligase 93.5 0.084 1.8E-06 66.3 5.2 76 67-156 367-445 (958)
90 TIGR00467 lysS_arch lysyl-tRNA 93.4 0.055 1.2E-06 62.8 3.3 52 1-53 52-121 (515)
91 COG0060 IleS Isoleucyl-tRNA sy 93.2 0.053 1.1E-06 66.3 2.7 76 67-156 375-451 (933)
92 PRK05743 ileS isoleucyl-tRNA s 93.1 0.1 2.3E-06 65.3 5.2 78 65-156 368-448 (912)
93 cd00802 class_I_aaRS_core cata 92.9 0.14 3E-06 49.1 4.7 40 474-521 94-133 (143)
94 TIGR00395 leuS_arch leucyl-tRN 92.9 0.37 8E-06 60.6 9.6 131 9-157 343-482 (938)
95 cd00805 TyrRS_core catalytic c 92.6 0.17 3.8E-06 54.0 5.4 14 577-590 192-205 (269)
96 PTZ00419 valyl-tRNA synthetase 92.4 0.14 3.1E-06 64.8 5.1 78 66-157 360-440 (995)
97 PRK13354 tyrosyl-tRNA syntheta 91.9 0.095 2E-06 59.4 2.4 17 577-593 227-243 (410)
98 PLN02381 valyl-tRNA synthetase 91.6 0.22 4.7E-06 63.3 5.3 79 65-157 426-510 (1066)
99 PLN02843 isoleucyl-tRNA synthe 91.3 0.22 4.7E-06 62.8 5.0 75 68-156 388-463 (974)
100 cd00395 Tyr_Trp_RS_core cataly 91.3 0.24 5.3E-06 53.0 4.7 14 577-590 195-208 (273)
101 PRK12556 tryptophanyl-tRNA syn 91.0 0.42 9.2E-06 52.6 6.3 24 472-496 148-171 (332)
102 PRK13804 ileS isoleucyl-tRNA s 90.4 0.27 5.9E-06 61.9 4.6 78 66-157 400-485 (961)
103 PF00579 tRNA-synt_1b: tRNA sy 90.3 0.27 5.8E-06 53.3 4.0 26 472-498 148-173 (292)
104 PF00133 tRNA-synt_1: tRNA syn 90.3 0.15 3.1E-06 61.1 2.1 78 66-157 334-412 (601)
105 PRK04156 gltX glutamyl-tRNA sy 89.6 0.18 3.8E-06 59.1 1.9 52 578-629 336-403 (567)
106 PRK12300 leuS leucyl-tRNA synt 88.5 0.55 1.2E-05 58.8 5.3 78 65-157 354-435 (897)
107 PRK12284 tryptophanyl-tRNA syn 88.4 0.8 1.7E-05 51.7 6.0 24 472-496 147-170 (431)
108 PRK05912 tyrosyl-tRNA syntheta 88.4 0.33 7.2E-06 55.0 3.0 17 577-593 229-245 (408)
109 TIGR00233 trpS tryptophanyl-tR 85.2 0.87 1.9E-05 50.1 4.0 25 472-497 138-162 (328)
110 PLN02959 aminoacyl-tRNA ligase 85.0 0.92 2E-05 57.9 4.6 76 66-157 494-572 (1084)
111 COG0525 ValS Valyl-tRNA synthe 84.7 1.3 2.8E-05 54.1 5.4 77 67-157 315-394 (877)
112 cd00418 GlxRS_core catalytic c 83.6 1.9 4E-05 44.9 5.4 34 578-612 151-185 (230)
113 KOG0434 Isoleucyl-tRNA synthet 81.7 1.5 3.3E-05 51.1 4.1 82 73-156 334-450 (1070)
114 PRK00927 tryptophanyl-tRNA syn 81.4 1.6 3.4E-05 48.3 4.2 23 472-495 137-159 (333)
115 PTZ00126 tyrosyl-tRNA syntheta 80.9 2.1 4.6E-05 48.1 5.0 22 472-494 209-230 (383)
116 PRK08560 tyrosyl-tRNA syntheta 80.0 1.6 3.4E-05 48.2 3.6 22 472-494 167-188 (329)
117 TIGR00234 tyrS tyrosyl-tRNA sy 79.3 1.4 3.1E-05 49.4 3.0 15 577-591 218-232 (377)
118 cd00806 TrpRS_core catalytic c 79.1 2.1 4.5E-05 46.1 4.0 15 579-593 190-205 (280)
119 cd07956 Anticodon_Ia_Arg Antic 78.7 7 0.00015 38.0 7.3 102 597-701 2-114 (156)
120 COG0162 TyrS Tyrosyl-tRNA synt 77.3 1.5 3.3E-05 49.2 2.4 13 472-484 179-191 (401)
121 PRK12282 tryptophanyl-tRNA syn 76.2 3.5 7.5E-05 45.5 4.8 23 472-495 141-163 (333)
122 cd00808 GluRS_core catalytic c 75.8 1.8 3.9E-05 45.3 2.3 35 577-612 159-194 (239)
123 PRK12285 tryptophanyl-tRNA syn 75.2 3.3 7.2E-05 46.3 4.4 24 473-497 203-226 (368)
124 TIGR00464 gltX_bact glutamyl-t 74.8 4.1 8.9E-05 47.2 5.2 54 28-84 43-96 (470)
125 PRK12283 tryptophanyl-tRNA syn 74.3 4.4 9.6E-05 45.4 5.0 17 577-593 261-277 (398)
126 COG0495 LeuS Leucyl-tRNA synth 72.8 0.16 3.4E-06 61.6 -7.2 101 180-289 208-312 (814)
127 KOG2007 Cysteinyl-tRNA synthet 64.1 22 0.00048 40.6 7.6 90 3-95 92-186 (586)
128 COG0180 TrpS Tryptophanyl-tRNA 63.6 2.9 6.2E-05 45.3 0.7 13 578-590 195-209 (314)
129 cd00671 ArgRS_core catalytic c 59.2 11 0.00024 38.7 4.1 9 578-586 204-212 (212)
130 PRK12558 glutamyl-tRNA synthet 58.4 25 0.00053 40.4 7.0 53 28-84 44-96 (445)
131 PTZ00348 tyrosyl-tRNA syntheta 57.8 8.2 0.00018 46.5 3.2 23 472-495 174-196 (682)
132 PRK01406 gltX glutamyl-tRNA sy 55.0 15 0.00033 42.6 4.7 53 28-84 46-106 (476)
133 PF09190 DALR_2: DALR domain; 54.7 17 0.00037 29.4 3.7 27 673-699 1-28 (63)
134 COG5270 PUA domain (predicted 53.1 7.8 0.00017 38.2 1.6 42 77-123 2-43 (202)
135 TIGR03838 queuosine_YadB gluta 47.8 37 0.0008 36.4 5.9 53 28-84 42-95 (272)
136 COG0018 ArgS Arginyl-tRNA synt 46.2 32 0.0007 40.8 5.6 58 33-92 237-296 (577)
137 PRK12451 arginyl-tRNA syntheta 41.4 52 0.0011 39.2 6.5 51 34-88 233-283 (562)
138 cd09287 GluRS_non_core catalyt 39.3 50 0.0011 34.6 5.1 52 29-84 44-97 (240)
139 PRK14895 gltX glutamyl-tRNA sy 38.2 21 0.00046 41.5 2.4 80 468-611 191-271 (513)
140 TIGR00456 argS arginyl-tRNA sy 35.9 49 0.0011 39.5 5.1 50 34-85 234-283 (566)
141 PLN03233 putative glutamate-tR 35.1 17 0.00038 42.3 1.1 53 28-84 53-105 (523)
142 PF00750 tRNA-synt_1d: tRNA sy 35.1 50 0.0011 36.8 4.7 46 37-84 147-192 (354)
143 smart00840 DALR_2 This DALR do 34.7 37 0.00081 26.3 2.7 27 674-700 2-29 (56)
144 PTZ00402 glutamyl-tRNA synthet 34.2 76 0.0017 37.7 6.1 52 28-83 94-146 (601)
145 PF02042 RWP-RK: RWP-RK domain 33.7 35 0.00075 26.7 2.2 29 14-50 13-41 (52)
146 cd07955 Anticodon_Ia_Cys_like 33.6 1.6E+02 0.0035 25.1 6.6 73 622-715 2-79 (81)
147 PTZ00437 glutaminyl-tRNA synth 32.5 1E+02 0.0023 36.3 6.8 52 29-84 94-145 (574)
148 PF00749 tRNA-synt_1c: tRNA sy 32.5 1.1E+02 0.0024 33.5 6.8 54 28-84 43-96 (314)
149 TIGR00440 glnS glutaminyl-tRNA 32.0 89 0.0019 36.6 6.2 54 28-84 42-95 (522)
150 cd00807 GlnRS_core catalytic c 31.9 99 0.0021 32.4 5.9 75 6-84 7-95 (238)
151 TIGR00440 glnS glutaminyl-tRNA 31.7 22 0.00048 41.5 1.3 52 576-627 237-304 (522)
152 PRK05710 glutamyl-Q tRNA(Asp) 31.6 84 0.0018 34.2 5.5 54 28-84 47-100 (299)
153 cd00807 GlnRS_core catalytic c 31.4 27 0.00058 36.5 1.7 53 576-628 160-228 (238)
154 PLN03233 putative glutamate-tR 31.4 93 0.002 36.5 6.2 32 598-629 280-311 (523)
155 PLN02486 aminoacyl-tRNA ligase 30.8 21 0.00045 40.2 0.8 15 579-593 264-279 (383)
156 PRK12410 glutamylglutaminyl-tR 30.1 36 0.00078 38.9 2.5 53 28-84 41-93 (433)
157 PRK05347 glutaminyl-tRNA synth 29.7 96 0.0021 36.6 5.9 52 28-84 71-124 (554)
158 TIGR00464 gltX_bact glutamyl-t 29.3 99 0.0021 35.9 6.0 32 578-610 239-271 (470)
159 PRK12410 glutamylglutaminyl-tR 28.3 1.2E+02 0.0026 34.8 6.2 35 577-612 232-267 (433)
160 PRK12558 glutamyl-tRNA synthet 28.3 41 0.0009 38.6 2.6 34 578-612 238-272 (445)
161 PRK05347 glutaminyl-tRNA synth 27.9 29 0.00062 40.8 1.3 54 576-629 266-335 (554)
162 PLN02859 glutamine-tRNA ligase 26.2 1.6E+02 0.0034 36.3 7.0 52 29-84 307-358 (788)
163 COG0008 GlnS Glutamyl- and glu 25.5 1.5E+02 0.0032 34.5 6.4 74 7-84 16-104 (472)
164 PRK14703 glutaminyl-tRNA synth 24.9 99 0.0022 38.1 5.1 54 28-84 73-126 (771)
165 PRK01406 gltX glutamyl-tRNA sy 24.4 1.3E+02 0.0027 35.1 5.7 34 577-611 248-282 (476)
166 PLN02627 glutamyl-tRNA synthet 22.9 66 0.0014 37.7 3.0 95 468-626 244-341 (535)
167 cd09287 GluRS_non_core catalyt 22.9 34 0.00073 35.9 0.6 51 577-627 163-229 (240)
168 PTZ00437 glutaminyl-tRNA synth 22.5 29 0.00062 40.9 -0.0 55 575-629 281-351 (574)
169 PRK04156 gltX glutamyl-tRNA sy 22.2 1.3E+02 0.0028 35.7 5.3 53 28-84 143-197 (567)
170 TIGR00463 gltX_arch glutamyl-t 21.8 1.2E+02 0.0027 35.8 5.0 53 28-84 135-187 (560)
171 PLN02907 glutamate-tRNA ligase 20.7 1.7E+02 0.0037 35.9 6.1 53 28-84 255-307 (722)
172 cd07963 Anticodon_Ia_Cys Antic 20.1 1.5E+02 0.0033 28.5 4.5 63 622-700 2-65 (156)
No 1
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-189 Score=1691.28 Aligned_cols=818 Identities=83% Similarity=1.364 Sum_probs=755.0
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|||||||||||||++|++.|++|++++.++++.|++||++||+++||+|+|+||||+|++++||+|.+||++|
T Consensus 146 m~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~G 225 (963)
T PLN02563 146 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRG 225 (963)
T ss_pred hcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhcccC
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSE 160 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s~ 160 (823)
|||+++++|||||.|+|+|||+||++|+||+||+++++++++||||+||+|+++|+++|+.|+||++|+.|||||||||.
T Consensus 226 liY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~ 305 (963)
T PLN02563 226 LAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSE 305 (963)
T ss_pred CEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhccc
Q 003404 161 GAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKT 240 (823)
Q Consensus 161 ~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (823)
|++|+|++.+.++...+.+|+|||||||||||++||+|+|+|+|+..++..+....+++|+..+.+.+++++.....+++
T Consensus 306 g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~ 385 (963)
T PLN02563 306 GAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKT 385 (963)
T ss_pred eEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceec
Confidence 99999998643222224689999999999999999999999999988876666667788999888887777655556799
Q ss_pred ceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccceEe
Q 003404 241 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIV 320 (823)
Q Consensus 241 ~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~ 320 (823)
|.|+|.+++||++++.+|||.++||++++||||||+|||||++||+||++||||++++|++.++......+.|+++|+|+
T Consensus 386 g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ 465 (963)
T PLN02563 386 GVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIV 465 (963)
T ss_pred ccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999753222122346789999999
Q ss_pred cccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCC
Q 003404 321 NSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLP 400 (823)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp 400 (823)
||.. ...+++||..++|+++|+++|++.|.++..++|+|||||||||||||+|||+|||++||+++++++++||+.||
T Consensus 466 ns~~--~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lp 543 (963)
T PLN02563 466 NSSS--SGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLP 543 (963)
T ss_pred cCCC--cccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccch
Confidence 8863 12358999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred cccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceeeecC
Q 003404 401 ELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG 480 (823)
Q Consensus 401 ~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G 480 (823)
++.++.+.|.|.+||+++++|+++.||+||++++||+|||||||||||||+||++|+|.+++|+++..++|+|+|+|+||
T Consensus 544 e~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG 623 (963)
T PLN02563 544 ELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGG 623 (963)
T ss_pred hhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeecc
Confidence 98888888999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhccc
Q 003404 481 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKS 560 (823)
Q Consensus 481 ~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (823)
.||+++||||+||||++|+++|++.+++||++|++||||+++++|.+|+|++|+|++.+++++.+....+.++.+.|...
T Consensus 624 ~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (963)
T PLN02563 624 AEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKS 703 (963)
T ss_pred HHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999989999999999999988788888888888999999888
Q ss_pred CCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHc
Q 003404 561 GDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVG 640 (823)
Q Consensus 561 ~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~ 640 (823)
+..+++.++..+.+.++++|||||+||+|+|.++|++||||+||||+|+++|..++.+|+++++.+++|||+|+|+++..
T Consensus 704 ~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~ 783 (963)
T PLN02563 704 GDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVG 783 (963)
T ss_pred ccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 88888866667778889999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhCccch
Q 003404 641 SSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKHPRKIIEPFILLLAPYAP 720 (823)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~~~~~~l~~l~~lLaPi~P 720 (823)
.......+.++........+.++++++++++++++++|++|+|++|++++|+|++.+++|....+++++.+++||+||||
T Consensus 784 ~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~~~~~~~~l~~ll~LLaPf~P 863 (963)
T PLN02563 784 APLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKWDKVPREAIEPFVLLLSPYAP 863 (963)
T ss_pred hhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhh
Confidence 32111112111111122457889999999999999999999999999999999999998876678999999999999999
Q ss_pred hhHHHHHHHcCCCCCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHHHHHHHhcChhHHhhhCCCCeEE
Q 003404 721 HMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKK 800 (823)
Q Consensus 721 ~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~gk~i~k 800 (823)
|+|||||+.|+..+||+.++||++++.++.+++++++||||||+|++++++.+++++++++++++++.++++|+|++|+|
T Consensus 864 hiaEELW~~Lg~~~sv~~~~WP~~d~~~l~~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~~k~i~K 943 (963)
T PLN02563 864 HLAEELWFRLGHSNSLAYEPWPEANPSYLVDDTVVLPVQINGKTRGTIEVEEGCSEDDAFALASQDEKLSKYLDGKEIKK 943 (963)
T ss_pred hHHHHHHHHcCCCCeeeeCCCCCCCHHHhhcCceEEEEEECCEEeeEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCceE
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCEEEEEecCCcccc
Q 003404 801 RIYVPGRILNVILDRQNIKA 820 (823)
Q Consensus 801 vi~v~~kivN~v~~~~~~~~ 820 (823)
+|+|||||||||++.+++++
T Consensus 944 ~I~vp~kivNiV~~~~~~~~ 963 (963)
T PLN02563 944 RIYVPGKILNVILKQQNVKV 963 (963)
T ss_pred EEEECCcEEEEEeCCCcCCC
Confidence 99999999999999999874
No 2
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-182 Score=1472.48 Aligned_cols=760 Identities=50% Similarity=0.862 Sum_probs=669.9
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+||||||+||||+||||+++|++|+.||.+||++||+|+++||++|||+||++||+|+||+|+||+|++||++|
T Consensus 92 m~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~G 171 (876)
T KOG0435|consen 92 MKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKG 171 (876)
T ss_pred hcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCcccc-ccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCC-CChHHHHHHHHhhhcc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEV-VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGR 158 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev-~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l-~wp~~v~~~q~~wig~ 158 (823)
|+||++.+|||||.++|||||||| .+|+|||||++|||++|+|||++||+||++|+++|++| +||+ |+.|||||||+
T Consensus 172 LAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~-vk~mQrnWIG~ 250 (876)
T KOG0435|consen 172 LAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGR 250 (876)
T ss_pred hhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-HHHHHHhhccc
Confidence 999999999999999999999999 69999999999999999999999999999999999999 6999 99999999999
Q ss_pred cCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhc
Q 003404 159 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 238 (823)
Q Consensus 159 s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (823)
|.|+.+.|++.+..+ .++.|.||||||+||+|++|++++|+|+++.... .+.+++. +++++ .
T Consensus 251 ~~G~el~F~ll~~~~--~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~------~lkefl~----~~~l~------~ 312 (876)
T KOG0435|consen 251 CDGAELMFPLLDDGS--NDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS------SLKEFLS----KSDLP------Q 312 (876)
T ss_pred ccceEEEEEeccCCC--CCceEEEEecCchhhccceEEEEcCCchhhhhhc------hHHHhhh----hhhcc------c
Confidence 999999999986433 3789999999999999999999999999875433 2223332 12222 2
Q ss_pred ccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccce
Q 003404 239 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 318 (823)
Q Consensus 239 ~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~ 318 (823)
| |.+.+.++.||++|+.+||+.++||+..+|||+||++|+|+.+|++||++.|+..+.++... |++.|+
T Consensus 313 K-g~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~----------f~~~~K 381 (876)
T KOG0435|consen 313 K-GVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVI----------FTNFGK 381 (876)
T ss_pred c-CcccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeee----------ecchhh
Confidence 4 78889999999999999999999999999999999999999999999999777766555331 222222
Q ss_pred EecccCcccccccCC-CCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCC
Q 003404 319 IVNSSNLISGLDING-LSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPL 397 (823)
Q Consensus 319 ~~~~~~~~~~~~~~g-~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv 397 (823)
...+.. +.| +..+.|+.+++++++..|.|+..++|+|+||+||||||||||||++||++|| ++|||+++|||
T Consensus 382 ~~~~~~------~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG-~vpVpes~LPV 454 (876)
T KOG0435|consen 382 KNEQKA------FTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCG-AVPVPESELPV 454 (876)
T ss_pred hhcccc------ccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCC-cccCcHHHCCc
Confidence 221211 355 3445588899999999999999999999999999999999999999998876 99999999999
Q ss_pred cCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceee
Q 003404 398 TLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVY 477 (823)
Q Consensus 398 ~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~ 477 (823)
.||+++++.+.| +||+..++|+++.||+||++++|||||||||+||||||+||+||+|..++|+++.+.+|||||+|
T Consensus 455 ~LP~l~~~~~kG---~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvY 531 (876)
T KOG0435|consen 455 TLPELNDFTPKG---PPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVY 531 (876)
T ss_pred ccccccccCCCC---CcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEE
Confidence 999999998777 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecC-CCccccCCCCCccccccccccchhh
Q 003404 478 VGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDV-DGSYISADSTDTLGEYEQESIPEEK 556 (823)
Q Consensus 478 v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~ 556 (823)
|||+||+++||||||||++||+++|++.+.|||++|++||||+|. +|+++ +|+||++++++..|.+
T Consensus 532 IGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~----tf~~~~sG~yl~~~ev~~~nd~--------- 598 (876)
T KOG0435|consen 532 IGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGK----TFRTKESGKYLGPEEVQQVNDH--------- 598 (876)
T ss_pred eccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccce----EEecCCCCccCCHHHhhhhcCC---------
Confidence 999999999999999999999999999999999999999999998 57775 9999999998876532
Q ss_pred hcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHH
Q 003404 557 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR 636 (823)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~ 636 (823)
-+.|++.+++++.+. ..+|||||++|+|||.+++.+||+|++|+|+|+++|++++++|+++.+.|+.||+.|+|+
T Consensus 599 ----~~~~vlk~~~e~~v~-t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~ 673 (876)
T KOG0435|consen 599 ----QNKFVLKNDKEVVVV-TYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWA 673 (876)
T ss_pred ----cceeEecCCCcceee-eHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHH
Confidence 246777777655553 499999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCC--CCCCCCCccCCC--CcchHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhc-------cccch
Q 003404 637 LIVGSSLP--DGTFKGGTVVND--EEPTLEQLCTLHKCIAKVTEEIEG-TRFNTGISAMMEFINAAYK-------WEKHP 704 (823)
Q Consensus 637 ~~~~~~~~--~~~~~~~~~~~~--~~~d~~~~~~l~~~~~~v~~~~e~-~~f~~ai~~l~~~~~~~~~-------~~~~~ 704 (823)
++...... +.+..+.....+ ...++.+.+..+.+++.|+++||. +.+|+||+.+|.|.|.+.+ +....
T Consensus 674 l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~h~~~~ 753 (876)
T KOG0435|consen 674 LVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSPEF 753 (876)
T ss_pred HHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcChHH
Confidence 87432211 122222222111 233456788899999999999986 7899999999999997765 33445
Q ss_pred HHHHHHHHHHhCccchhhHHHHHHHcCCCCCc-cccCCCCCCcccccccccEEeEEEcceEEEEEEecCC-CCH--HHHH
Q 003404 705 RKIIEPFILLLAPYAPHMSEELWFRLGHSNSL-AYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEG-CSE--EEAF 780 (823)
Q Consensus 705 ~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv-~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~-~s~--e~~~ 780 (823)
..+|+.+++||+|++||+|+|+|+.|+...+. ....||.++.+++.+.+ .+.|+|||+.+++++++.+ +++ +++.
T Consensus 754 ~~al~~lv~mlaP~aPh~asE~Ws~l~~~~~~~~~~~WP~vd~~~~~~~~-~~~v~INGk~~g~i~v~~~~l~~~~d~~~ 832 (876)
T KOG0435|consen 754 ERALEALVIMLAPFAPHVASELWSALANDLSWVSDVKWPEVDPDYLIEFE-VLPVQINGKVRGKIEVDRRILEEMMDDAL 832 (876)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHhccccchhccCCccCChhhhcccc-eeeEEEcCEecceeecchHHHHHHHHHHH
Confidence 68999999999999999999999999876554 23369999999988766 8899999999999999986 444 7899
Q ss_pred HHHhcChhHHhhhCCCCeEEEEEeC-CCEEEEEecCCccc
Q 003404 781 KLASLDEKLSKFLDGKSIKKRIYVP-GRILNVILDRQNIK 819 (823)
Q Consensus 781 ~~~~~~~~~~~~l~gk~i~kvi~v~-~kivN~v~~~~~~~ 819 (823)
.+++..+.+.++|.|++|+|.+++| +|||||++.+.+.+
T Consensus 833 e~a~~~e~~~ryL~gkkIkks~~~~r~kiin~i~dr~~~k 872 (876)
T KOG0435|consen 833 EFALQTEDGRRYLKGKKIKKSFYVPRRKIINFILDRIQAK 872 (876)
T ss_pred HHHhcCHHHHHHhcCchhhhheechhHHHHHHHHHhhhcc
Confidence 9999999999999999999999999 79999999876654
No 3
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.2e-170 Score=1528.56 Aligned_cols=773 Identities=51% Similarity=0.898 Sum_probs=691.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|+|||||||||||++|++.|++|++|+.++++.|++||++||+++||+++|+||||+|++++||+|.+|+++|
T Consensus 64 m~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kG 143 (842)
T TIGR00396 64 MKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKG 143 (842)
T ss_pred hcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccc-cCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC-ChHHHHHHHHhhhcc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVV-DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGR 158 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~-~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~-wp~~v~~~q~~wig~ 158 (823)
|||++.++|+|||.|+|+|||+||+ +|+||+||.++++++++||||+||+|+++|+++|+.++ ||++|+.||+||||+
T Consensus 144 liy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 144 LAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGK 223 (842)
T ss_pred CeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccc
Confidence 9999999999999999999999996 58999999999999999999999999999999999996 999999999999999
Q ss_pred cCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhc
Q 003404 159 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 238 (823)
Q Consensus 159 s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (823)
|.|++|+|++.+. +.+|+|||||||||||++||||||+|+|+..+.. ....+++|+..+...+..++......
T Consensus 224 s~g~~i~f~~~~~-----~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 296 (842)
T TIGR00396 224 SEGVEITFKIADH-----KEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE--NNPKVAAFIKKILQKTTTERTKETKL 296 (842)
T ss_pred cceEEEEEEcCCC-----CCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc--chHHHHHHHHHHhccCchhhhhhhcc
Confidence 9999999998531 3589999999999999999999999999877533 33457788887776666666555678
Q ss_pred ccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccce
Q 003404 239 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 318 (823)
Q Consensus 239 ~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~ 318 (823)
++|.|+|.+++||++++.+|||.++||++++|||+||+|||||++||+||++||||++++|++.+. .....+|+++|+
T Consensus 297 ~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~--~~~~~~~~~~G~ 374 (842)
T TIGR00396 297 KKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGK--NLKTQAFTEDGV 374 (842)
T ss_pred cccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCccc--ccccccccCCce
Confidence 999999999999999999999999999999999999999999999999999999999999987532 112346888999
Q ss_pred EecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCc
Q 003404 319 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLT 398 (823)
Q Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~ 398 (823)
++++.. ++||...+|++.|+++|++.|.+++.++|+|||||||||||||+|||+|||++|| .+++++++||+.
T Consensus 375 ~~~~~~------~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g-~~~v~~~~lp~~ 447 (842)
T TIGR00396 375 LVNSGE------FNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGG-AVPVPEEDLPVI 447 (842)
T ss_pred Eecchh------cCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCC-eEeCcchhcchh
Confidence 998754 9999999999999999999999999999999999999999999999999998765 678999999999
Q ss_pred CCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceeee
Q 003404 399 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYV 478 (823)
Q Consensus 399 lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v 478 (823)
||+.. .+.|.|.+|+..+++|+++.||+||++++||+|||||||||||||+||++|++...+++++..++|+|+|+|+
T Consensus 448 l~~~~--~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi 525 (842)
T TIGR00396 448 LPELV--NYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYI 525 (842)
T ss_pred hhhhh--hccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEee
Confidence 99644 4456667899999999999999999999999999999999999999999999888888888789999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhc
Q 003404 479 GGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVM 558 (823)
Q Consensus 479 ~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (823)
||+||+++||+||||||++|.+++++..++||++|++||||++. + ++++|+|+.|++++.. ..
T Consensus 526 ~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~----~-~~~~G~~~~~~~~~~~-~~----------- 588 (842)
T TIGR00396 526 GGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGF----Y-YPPNGKSPPDELTERD-EK----------- 588 (842)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEee----e-ecCCCCccChhhhccc-cc-----------
Confidence 99999999999999999999999999999999999999999975 2 5679999999987622 11
Q ss_pred ccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH
Q 003404 559 KSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI 638 (823)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~ 638 (823)
.++. .++ ..+.+..+|||||+||+|+|.+++++||||++|||+|+.++++++++|+++.++++.++++|+|+++
T Consensus 589 ----~~~~-~~~-~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~ 662 (842)
T TIGR00396 589 ----AKDK-SGG-ELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLF 662 (842)
T ss_pred ----cccc-cCC-cccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 1111 110 1112234699999999999999999999999999999888999999999999999999999999987
Q ss_pred HcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHh
Q 003404 639 VGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTR-FNTGISAMMEFINAAYKWEK--HPRKIIEPFILLL 715 (823)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~-f~~ai~~l~~~~~~~~~~~~--~~~~~l~~l~~lL 715 (823)
.........+...........|+++++++++++++++++|++|+ |++|++++|+|++.++++.. ..+++++.+++||
T Consensus 663 ~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~~~~l~~~l~~ll~lL 742 (842)
T TIGR00396 663 YNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKKDALYLEYLKGFLTVL 742 (842)
T ss_pred HHHHhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 43210001100000011234688999999999999999999988 99999999999999888653 5679999999999
Q ss_pred CccchhhHHHHHHHcCCC-CCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHHHHHHHhcChhHHhhhC
Q 003404 716 APYAPHMSEELWFRLGHS-NSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLD 794 (823)
Q Consensus 716 aPi~P~~aEelw~~L~~~-~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~ 794 (823)
+||+||+|||||+.|+.. .||+.++||.++++++.++.++++||||||+|+++.++.+++++++++++++++.++++|.
T Consensus 743 aPf~PhiaEElW~~l~~~~~sv~~~~wP~~d~~~l~~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~ 822 (842)
T TIGR00396 743 SPFAPHLAEELWEKLGSEPFIIKQAKWPKVDETALVEDKVTIVLQVNGKFKAKKTVPKDADEEQVEELAKQDPEVKKYLE 822 (842)
T ss_pred hhhhhHHHHHHHHHhCCCCCeeecCCCCCCCHHHHhhcceEEEEEEcCeEEEEEEeCCCCCHHHHHHHHhcCHHHHHHhC
Confidence 999999999999999865 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCEEEEEec
Q 003404 795 GKSIKKRIYVPGRILNVILD 814 (823)
Q Consensus 795 gk~i~kvi~v~~kivN~v~~ 814 (823)
|++|+|+|+||+||||||++
T Consensus 823 gk~i~k~i~v~~klvNiv~~ 842 (842)
T TIGR00396 823 NKTIKKVIYVPGKLVNFVIK 842 (842)
T ss_pred CCCceEEEEeCCCEEEEEeC
Confidence 99999999999999999984
No 4
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-166 Score=1440.07 Aligned_cols=734 Identities=50% Similarity=0.869 Sum_probs=681.4
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||||||||||||||||||++|++.|.+|+.||.+||+.|++||++||+|+||+|++.||||+||+|+||+|.+|+++|
T Consensus 69 m~GyNVL~PMGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekG 148 (814)
T COG0495 69 MQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKG 148 (814)
T ss_pred hcCCeecccCcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC--ChHHHHHHHHhhhcc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGR 158 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~--wp~~v~~~q~~wig~ 158 (823)
|||+++.+|||||.|+|+||||||.+|+|||||++|++++++|||||||+|+++|+++|+.|+ ||++|+.||+||||+
T Consensus 149 L~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~ 228 (814)
T COG0495 149 LAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGP 228 (814)
T ss_pred CEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred cCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhc
Q 003404 159 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 238 (823)
Q Consensus 159 s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (823)
|.|+.+.|.+.+.. ....+.||||||+|++|++++++.|+|+++..++.++....+.+|+..+...+..+++.....
T Consensus 229 s~g~~v~f~~~~~~---~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~ 305 (814)
T COG0495 229 SEGYEVAFVVDGEE---EIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAE 305 (814)
T ss_pred CCCeEEEEecCCcc---cceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCC
Confidence 99999999984321 146799999999999999999999999999999998877888999999998888887777778
Q ss_pred ccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccce
Q 003404 239 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 318 (823)
Q Consensus 239 ~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~ 318 (823)
+.|.++|.+++||++++.+|||.++||.+.||||+||+||+|+++|++||++|+||+..+|...++ ....+|+++|+
T Consensus 306 k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~---~~~~~~~~~g~ 382 (814)
T COG0495 306 KDGVFLGGYAINPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT---VGKKVYEGEGV 382 (814)
T ss_pred CcceeccccccCCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCC---cccceeccCce
Confidence 999999999999999999999999999999999999999999999999999999999999987644 44566779999
Q ss_pred EecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCc
Q 003404 319 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLT 398 (823)
Q Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~ 398 (823)
++||.. ++|+...++...+..++.+.+.|+.+++|+||||++|||||||+|||++||+.| +.+++++++||+.
T Consensus 383 linS~~------~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~-~~~~~~~d~Lpv~ 455 (814)
T COG0495 383 LINSGG------LDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDC-GVVPVPEDWLPVK 455 (814)
T ss_pred Eecccc------ccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccC-CcccCchHhcCcc
Confidence 999975 899998878888889999999999999999999999999999999999999765 5899999999999
Q ss_pred CCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCC-hhhhhhhhccccCCceee
Q 003404 399 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNS-KELVDKTKERYWSPVDVY 477 (823)
Q Consensus 399 lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~-~~~~~~~~~~~w~p~D~~ 477 (823)
||+...+.++| +||..+++|+.+.||. ++++||+||||+|++|||||+||.+|.+. ..+++++..+||+|||+|
T Consensus 456 lp~~~~~~gt~---~pL~~~~~W~~~s~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~y 530 (814)
T COG0495 456 LPERVRGLGTG---SPLPWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLY 530 (814)
T ss_pred cccccccCCCC---CCCCCCcceEEEecCC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChhee
Confidence 99988765554 7999999999999997 89999999999999999999999999998 688899999999999999
Q ss_pred ecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhh
Q 003404 478 VGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKV 557 (823)
Q Consensus 478 v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 557 (823)
+||+||+++||||+||||++|++.|+++.+|||++|++||||++.
T Consensus 531 igG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~----------------------------------- 575 (814)
T COG0495 531 IGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGE----------------------------------- 575 (814)
T ss_pred ecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEec-----------------------------------
Confidence 999999999999999999999999999999999999999999963
Q ss_pred cccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHH
Q 003404 558 MKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRL 637 (823)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~ 637 (823)
+|+|||||+||+|+|++++++||||++|+|+|+++|..++++|+++++++++|||+|+|++
T Consensus 576 -------------------~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l 636 (814)
T COG0495 576 -------------------EGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNL 636 (814)
T ss_pred -------------------CCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHH
Confidence 2799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCccCCCCcch-HHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHhcccc-------chHHHH
Q 003404 638 IVGSSLPDGTFKGGTVVNDEEPT-LEQLCTLHKCIAKVTEEIEG-TRFNTGISAMMEFINAAYKWEK-------HPRKII 708 (823)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~l~~~~~~v~~~~e~-~~f~~ai~~l~~~~~~~~~~~~-------~~~~~l 708 (823)
+....-.. ... ..... ......++++++.|+++++. +.||+|++++|+|+|.+.++.. +.++++
T Consensus 637 ~~~~~~~~-----~~~--~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~~~~~l~~~l 709 (814)
T COG0495 637 VKEHLEKL-----VEE--LTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEGDRKVLREAL 709 (814)
T ss_pred HHHhhhcc-----ccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 85432000 000 11112 34556688999999999998 9999999999999999887532 356799
Q ss_pred HHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHHHHHHHhcChh
Q 003404 709 EPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEK 788 (823)
Q Consensus 709 ~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~~~~~~~~ 788 (823)
+.+++||+||+||+|||||+.||..++|..++||+++++.+..+.+++.+|+||+.|+++.++.++++++++.++++.+.
T Consensus 710 ~~~v~lLaP~aPH~aEElW~~lg~~~~v~~~~wP~~de~~l~~~~~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~ 789 (814)
T COG0495 710 ETWVRLLAPFAPHIAEELWEELGNEGFVSNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAADADEEKVKEIALADEE 789 (814)
T ss_pred HHHHHHhcccccHHHHHHHHHhcCCCceeeCCCCCCChhhccccceEEEEEEeeEEEEEEEEcCCCCHHHHHHHHhccHH
Confidence 99999999999999999999999766899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCeEEEEEeCCCEEEEEe
Q 003404 789 LSKFLDGKSIKKRIYVPGRILNVIL 813 (823)
Q Consensus 789 ~~~~l~gk~i~kvi~v~~kivN~v~ 813 (823)
++++|+|++++|+|+||||++|||+
T Consensus 790 v~~~l~~~~~~k~i~VP~k~vn~v~ 814 (814)
T COG0495 790 VQKFLQGKTIKKVIAVPGKPVNIVE 814 (814)
T ss_pred HHHHHcCCCcceEEecCCcceEEeC
Confidence 9999999999999999999999985
No 5
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=2e-160 Score=1438.43 Aligned_cols=733 Identities=57% Similarity=1.013 Sum_probs=666.3
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++||||||||||++|++.|++|++|+.++++.|++||++||+++||+++|+|+||+|++++||+|.+|+++|
T Consensus 67 m~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G 146 (805)
T PRK00390 67 MQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKG 146 (805)
T ss_pred hcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCC-CChHHHHHHHHhhhccc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRS 159 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l-~wp~~v~~~q~~wig~s 159 (823)
|||++.++|+|||.|+|+||++||++|+|++||+++++++++||||+|++|+++|+++|+.+ +||++|+.||+||||+|
T Consensus 147 liy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~ 226 (805)
T PRK00390 147 LAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRS 226 (805)
T ss_pred CEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 59999999999999999
Q ss_pred CCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhcc
Q 003404 160 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 239 (823)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (823)
.|++++|++.+. +.+++||||||||||||+||||||+|+|+...... ...+++++..+..+.++++......+
T Consensus 227 ~~~~i~f~~~~~-----~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (805)
T PRK00390 227 EGAEVTFKVEDS-----DEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ--NPAVAAFIEECKKKSDLERQTETKEK 299 (805)
T ss_pred ceEEEEEEccCC-----CCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc--hHHHHHHHHHHhhhcchhhhhcccce
Confidence 999999998531 36899999999999999999999999998776542 34467788776665555543222344
Q ss_pred cceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccceE
Q 003404 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLI 319 (823)
Q Consensus 240 ~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~ 319 (823)
.|.|.|.+|.||++++++||+.++||++++|||+||+|||||++||++|++||||+.++|++++........+|+++|+|
T Consensus 300 ~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~ 379 (805)
T PRK00390 300 TGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVL 379 (805)
T ss_pred eeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEE
Confidence 55799999999999999999999999999999999999999999999999999999999987631112234568889999
Q ss_pred ecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcC
Q 003404 320 VNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTL 399 (823)
Q Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~l 399 (823)
+++.. ++|+...+|+++|++.|.+.|.++..++|+++|||||||||||+|||+|||++|| .+++++++||+.+
T Consensus 380 ~~~~~------~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g-~~~v~~~~l~~~l 452 (805)
T PRK00390 380 INSGE------LDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCG-IVPVPEEDLPVVL 452 (805)
T ss_pred Eeccc------cCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCC-ceeCchHhhhhhh
Confidence 87743 8999999999999999999999999999999999999999999999999998876 6778999999999
Q ss_pred CcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceeeec
Q 003404 400 PELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVG 479 (823)
Q Consensus 400 p~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~ 479 (823)
|+ .+.+.|. ++|++.+++|++..||+||+.++||+|||||||||||||++|++|++...+++++..++|+|+|+|++
T Consensus 453 ~~--~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~ 529 (805)
T PRK00390 453 PE--DVVPDGT-GSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLPVDQYIG 529 (805)
T ss_pred hh--hcccCCC-CChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcCCCcEEec
Confidence 85 3445554 56888999999999999999999999999999999999999999998777888888899999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcc
Q 003404 480 GAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMK 559 (823)
Q Consensus 480 G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (823)
|+||+++||+|+||||++|.+.+++.+++||++|++||||
T Consensus 530 G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v---------------------------------------- 569 (805)
T PRK00390 530 GIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV---------------------------------------- 569 (805)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE----------------------------------------
Confidence 9999999999999999999999988889999999999973
Q ss_pred cCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHH
Q 003404 560 SGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIV 639 (823)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~ 639 (823)
|||||+||+|+|.+++++||||++|||++++++++++++|+++.+.++.++++|+|+++.
T Consensus 570 --------------------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~ 629 (805)
T PRK00390 570 --------------------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVV 629 (805)
T ss_pred --------------------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998899999999999999999999999999875
Q ss_pred cCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHH
Q 003404 640 GSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE-----KHPRKIIEPFILL 714 (823)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~-----~~~~~~l~~l~~l 714 (823)
........+. ......|+++++++++++++++++|++|+|++|++++|+|++.++++. ...+++++.+++|
T Consensus 630 ~~~~~~~~~~----~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~~~~~~~l~~~l~~l~~l 705 (805)
T PRK00390 630 DAKGEAGALD----VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAEDEQDKAVLREALEILVRL 705 (805)
T ss_pred HhhhcccccC----cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4110101111 112346889999999999999999999999999999999999988863 2456899999999
Q ss_pred hCccchhhHHHHHHHcCCCCCccccCCCCCCcccccccccEEeEEEcceEEEEEEecCCCCHHHHHHHHhcChhHHhhhC
Q 003404 715 LAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLD 794 (823)
Q Consensus 715 LaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~~~~~~~~~~~~l~ 794 (823)
|+|||||+|||||+.|+..+||+.+.||.++++++.++.+++.+||||++|++++++.+++++++++++++++.++++|.
T Consensus 706 LaPf~P~iaEElw~~L~~~~sv~~~~wP~~~~~~~~~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~a~~~~~i~~~l~ 785 (805)
T PRK00390 706 LAPFAPHLAEELWEKLGHEGSIANAPWPTADEAALVEDEVTIVVQVNGKVRGKIEVPADASKEEIEALALADEKVQKFLE 785 (805)
T ss_pred HhhhhhHHHHHHHHHcCCCCeeEecCCCCCCHHHhhhhccEEEEEEccceeEEEEeCCCCCHHHHHHHHhcCHHHHHHhC
Confidence 99999999999999998778999999999999988888899999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEeCCCEEEEEec
Q 003404 795 GKSIKKRIYVPGRILNVILD 814 (823)
Q Consensus 795 gk~i~kvi~v~~kivN~v~~ 814 (823)
||+|+|+|+||+||||||++
T Consensus 786 ~k~i~k~I~vp~kiiNiv~~ 805 (805)
T PRK00390 786 GKTIKKVIVVPGKLVNIVVK 805 (805)
T ss_pred CCCccEEEEeCCCEEEEEeC
Confidence 99999999999999999984
No 6
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-120 Score=1064.70 Aligned_cols=618 Identities=27% Similarity=0.432 Sum_probs=486.9
Q ss_pred CCCCcccccccCCccchHHHHHHHH-hCCC---------------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-TGTH---------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~g~~---------------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+||+|.++|||||||||||.++++ .|+. |++++.++++.|+++|+|||++.||+++|.|||++
T Consensus 84 m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ 163 (933)
T COG0060 84 MQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPS 163 (933)
T ss_pred ccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHH
Confidence 8999999999999999999999875 5632 45788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 144 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w 144 (823)
|++.++|+|.+|++||||||+.+||+|||.|+|+|||+||+++. +
T Consensus 164 ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d--~--------------------------------- 208 (933)
T COG0060 164 YEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD--V--------------------------------- 208 (933)
T ss_pred HHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc--c---------------------------------
Confidence 99999999999999999999999999999999999999999752 0
Q ss_pred hHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHH
Q 003404 145 PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLA 224 (823)
Q Consensus 145 p~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 224 (823)
+|+++||+|++.+. |...+.+++||||||||||+|.||||||+.+|+...+..+.-...++.++..
T Consensus 209 -------------~dpSIyV~F~v~~~-~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~ 274 (933)
T COG0060 209 -------------KDPSIYVKFPVKDE-GLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESV 274 (933)
T ss_pred -------------CCceEEEEEEeccC-CCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHH
Confidence 68999999999754 2345799999999999999999999999999977665543211112233322
Q ss_pred hccChhh-hhhhhhcccceecceEEecCCCC----CeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcC-Cceeee
Q 003404 225 SRKSDLE-RTELQKEKTGVFSGCYARNPASG----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD-ISIHSV 298 (823)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~~~~g~~~~~P~~~----~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~-l~~~~v 298 (823)
..+...+ -+.+.+.||..|.|+.|.|||.. +..||+.+|||+.+.|||+||+|||||++||.+|+++| ||+.++
T Consensus 275 ~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~p 354 (933)
T COG0060 275 AKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNP 354 (933)
T ss_pred HHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccc
Confidence 2222222 23466788999999999999995 89999999999999999999999999999999999999 799999
Q ss_pred ccCCCCCCcccccccccc----------------ceEecccC--------------------cccccccCCCCHHHH-HH
Q 003404 299 VMPDDESSSQSEKAYTGE----------------GLIVNSSN--------------------LISGLDINGLSCQEA-TS 341 (823)
Q Consensus 299 v~~~~~~~~~~~~~~~~~----------------g~~~~~~~--------------------~~~~~~~~g~~~~~~-~~ 341 (823)
||+. |+++++.+.|.|. |.+..++. -|||+.++.++.+.- ..
T Consensus 355 VD~~-G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i 433 (933)
T COG0060 355 VDDN-GRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEI 433 (933)
T ss_pred cCCC-ccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHH
Confidence 9987 7888777777663 33333322 168888775544322 22
Q ss_pred HHHHHHHHcCCCceeEe-eecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCcc
Q 003404 342 KVIEWAEKTGNGKKKVN-YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVS 420 (823)
Q Consensus 342 ~v~~~l~~~~~~~~~~~-~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~ 420 (823)
.-++|.+++|.+|...+ .+.+||||||||+||+|||+|+|++||+++++ .++|.-. ....+...|...+ +..
T Consensus 434 ~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~-~~El~e~--~~~~~~~~g~~~w----~~~ 506 (933)
T COG0060 434 NKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVI-TEELEEL--VGQLVEEKGIDDW----HRP 506 (933)
T ss_pred hcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeecc-HHHHHHH--HHHHhhhcCchhh----hcc
Confidence 35678888776555433 36789999999999999999999999988775 2222110 0111222333111 122
Q ss_pred cee---ecccCCCCCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCc---eeeecChhhHHHHHHHHHH
Q 003404 421 WVQ---TTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPV---DVYVGGAEHAVLHLLYARF 493 (823)
Q Consensus 421 w~~---~~~~~~g~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~---D~~v~G~D~~~~Hlly~rf 493 (823)
+++ ..|+.||+.++|++|||||||||. .+|.... |.+ +.++|. |+|++|.||+ |+
T Consensus 507 ~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~----------~~~~~~~~aD~~lEGsDQ~-------RG 568 (933)
T COG0060 507 DIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PRE----------NLKFPALFADFYLEGSDQT-------RG 568 (933)
T ss_pred chHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Ccc----------cccCccccCcEEEEecccc-------ch
Confidence 222 345588999999999999999994 4444333 332 223454 9999999997 99
Q ss_pred HHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcch
Q 003404 494 WHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNI 572 (823)
Q Consensus 494 w~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (823)
|+.+++.++. +..+.||++|++||+++++
T Consensus 569 WF~Ssl~~s~a~~~~aPYk~vltHGfvlDe-------------------------------------------------- 598 (933)
T COG0060 569 WFYSSLLTSTALFGRAPYKNVLTHGFVLDE-------------------------------------------------- 598 (933)
T ss_pred hHHHHHHHHHHHcCCchHHHHhhcccEECC--------------------------------------------------
Confidence 9877666654 5678999999999999965
Q ss_pred hccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchH---HHHHHHHHHHHHHHcCCCCCCCCC
Q 003404 573 RLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIE---GVHRFLGRMWRLIVGSSLPDGTFK 649 (823)
Q Consensus 573 ~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~---~~~~~l~r~~~~~~~~~~~~~~~~ 649 (823)
+|+|||||+||+|+|.+++++||||+||||++++. +.+|+.+|++.++ .++|.|+|+++|+++++ .+++..
T Consensus 599 ----~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd-~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl-~~fdp~ 672 (933)
T COG0060 599 ----KGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSD-YWEDLRFSDEILKQVREVYRKIRNTYRFLLGNL-DDFDPK 672 (933)
T ss_pred ----CCCCccccCCCcCCHHHHHHhhCchheeeeeeecC-chhccccCHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcc
Confidence 38999999999999999999999999999999766 8888889977655 45667777888887763 323222
Q ss_pred CCccC--CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHhcccc----------------------ch
Q 003404 650 GGTVV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK----------------------HP 704 (823)
Q Consensus 650 ~~~~~--~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~-~~~~~~~~----------------------~~ 704 (823)
...+. .....|+++++++++++++++++|++|+|+++++++++|+ .++++|+. ++
T Consensus 673 ~~~~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~L 752 (933)
T COG0060 673 KDAVLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTL 752 (933)
T ss_pred ccccchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Confidence 11122 2345699999999999999999999999999999999999 67777531 23
Q ss_pred HHHHHHHHHHhCccchhhHHHHHHHcCCC---CCccccCCCCCCcccc
Q 003404 705 RKIIEPFILLLAPYAPHMSEELWFRLGHS---NSLAYESFPKANPDYL 749 (823)
Q Consensus 705 ~~~l~~l~~lLaPi~P~~aEelw~~L~~~---~sv~~~~WP~~~e~~l 749 (823)
.++|..++++||||+||+|||+|+.|... +|||++.||++++.+.
T Consensus 753 y~il~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~~~~~~ 800 (933)
T COG0060 753 YHILKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELI 800 (933)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHhCccCCCCceeEeccCCccccccc
Confidence 47899999999999999999999999654 7999999999877654
No 7
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.2e-114 Score=1055.74 Aligned_cols=598 Identities=25% Similarity=0.404 Sum_probs=476.3
Q ss_pred CCCCcccccccCCccchHHHHHHHH-hCCC----------------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~g~~----------------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+++|||||||||||++|+| .|++ |++|+.++++.|++||+|||+|+||+|+|.||||
T Consensus 76 m~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~ 155 (975)
T PRK06039 76 MKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDN 155 (975)
T ss_pred hCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCH
Confidence 8999999999999999999999987 5765 5689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++++||+|.+||++|||||+.++|+|||.|+|+|||+||++|+++++
T Consensus 156 ~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~------------------------------- 204 (975)
T PRK06039 156 EYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVK------------------------------- 204 (975)
T ss_pred HHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccC-------------------------------
Confidence 9999999999999999999999999999999999999999997766653
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccc----hHHHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIEE 219 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~----~~~~~~ 219 (823)
++.++|+|++.+. .+.+++||||||||||||+||||||+++|+.+....+. ...++.
T Consensus 205 ---------------~~~~~v~f~l~~~----~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~ 265 (975)
T PRK06039 205 ---------------DPSVYVKFKLKGE----ENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEK 265 (975)
T ss_pred ---------------CceEEEEEEecCC----CCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHH
Confidence 3457999998531 24799999999999999999999999999866533221 112222
Q ss_pred HHHHHhccChhhhhhhhhcccceecceEEecCCCC-----CeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCc
Q 003404 220 YKNLASRKSDLERTELQKEKTGVFSGCYARNPASG-----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDIS 294 (823)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~-----~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~ 294 (823)
+.. ... ..+...+|..|.|++|.||++. +.+||+.++||++++|||+||+|||||++||+++++||||
T Consensus 266 ~~~-----~~~--~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~ 338 (975)
T PRK06039 266 VLK-----EDY--EVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLP 338 (975)
T ss_pred Hhh-----ccc--EEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCC
Confidence 221 111 2234567788999999999973 4799999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeE-----------------
Q 003404 295 IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV----------------- 357 (823)
Q Consensus 295 ~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~----------------- 357 (823)
++++|+++ |++++..+ ++.|+..++|+++|++.|.+.|...+..
T Consensus 339 ~~~~id~~-G~~~~~~~------------------~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~ 399 (975)
T PRK06039 339 VVCPVDDD-GRFTEEVP------------------DYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLI 399 (975)
T ss_pred ccceeCCC-ceEcCCCc------------------cccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEE
Confidence 99999876 44443333 3566677777777777777666542110
Q ss_pred -------------------------ee---------------ecCceeeeeccccCCcccEEEeCCCCceeeCC-CCccC
Q 003404 358 -------------------------NY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLH-EAELP 396 (823)
Q Consensus 358 -------------------------~~---------------~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~-~~~lp 396 (823)
++ +++||||||||+||+|||+|+|++||....+. .++|.
T Consensus 400 ~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~ 479 (975)
T PRK06039 400 YYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELE 479 (975)
T ss_pred EEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHH
Confidence 11 57999999999999999999998887554432 12210
Q ss_pred CcCCcccccCCCCCCCCCCcCCccce---eecccCCCCCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccC
Q 003404 397 LTLPELDDFTPTGTGEPPLSKAVSWV---QTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWS 472 (823)
Q Consensus 397 v~lp~~~~~~~~g~~~~~l~~~~~w~---~~~~~~~g~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~ 472 (823)
...|....++..+..|+ ...|| ||+.++|++|||||||||+ |||..+++|.+.+..| ++|+
T Consensus 480 ---------~~~g~~~~~~~l~~~~~d~~~~~~~-~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f-----~~~~ 544 (975)
T PRK06039 480 ---------ELFGEDVEPIDLHRPYVDEVTLPCP-DGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWF-----EKHF 544 (975)
T ss_pred ---------HHhCCCcchhhhcccccccccccCC-CCcceEeccccccceeecCCccHHHhCCcccChhhh-----hccC
Confidence 11121112333345564 34565 4788999999999999997 6888889997654433 4578
Q ss_pred CceeeecChhhHHHHHHHHHHHHHHHHHhcCc-cCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccc
Q 003404 473 PVDVYVGGAEHAVLHLLYARFWHKVLYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQES 551 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~-~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 551 (823)
|+|++++|+||+ |||+++|+.++.. ...+||+++++||||++.
T Consensus 545 Pad~~~~G~Di~-------r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~----------------------------- 588 (975)
T PRK06039 545 PADFIVEGIDQT-------RGWFYTLLALSTALFDRPPYKNVLVHGHVLDE----------------------------- 588 (975)
T ss_pred CceEEEechhhH-------hhHHHHHHHHHHHhcCCCcccEEEEeeeEECC-----------------------------
Confidence 999999999997 9999988887654 457899999999999853
Q ss_pred cchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccc-hHHHHHH
Q 003404 552 IPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSG-IEGVHRF 630 (823)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~-i~~~~~~ 630 (823)
+|+|||||+||+|+|.+++++||+|++||||++.++.++|++|+++. ++.+.++
T Consensus 589 -------------------------~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~ 643 (975)
T PRK06039 589 -------------------------DGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKF 643 (975)
T ss_pred -------------------------CCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHH
Confidence 38999999999999999999999999999999988889999999999 6777888
Q ss_pred HHHHHHHHHcC----CCCCCCCCCCc--cCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc---
Q 003404 631 LGRMWRLIVGS----SLPDGTFKGGT--VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE--- 701 (823)
Q Consensus 631 l~r~~~~~~~~----~~~~~~~~~~~--~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~--- 701 (823)
++++||.+... .+......... .......|+++++++++++++++++|++|+|+.|++.+++|++.+++|+
T Consensus 644 l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~ 723 (975)
T PRK06039 644 LLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRR 723 (975)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888754210 01110000000 0112346889999999999999999999999999999999998776542
Q ss_pred -------c-----------chHHHHHHHHHHhCccchhhHHHHHHHcC---CCCCccccCCCCCCccccc
Q 003404 702 -------K-----------HPRKIIEPFILLLAPYAPHMSEELWFRLG---HSNSLAYESFPKANPDYLK 750 (823)
Q Consensus 702 -------~-----------~~~~~l~~l~~lLaPi~P~~aEelw~~L~---~~~sv~~~~WP~~~e~~l~ 750 (823)
. .+.++|+.+++||+|||||+||+||+.|+ ..+||+.+.||++++.+++
T Consensus 724 ~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~~~~d 793 (975)
T PRK06039 724 SRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLID 793 (975)
T ss_pred hhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCccccCC
Confidence 1 13468999999999999999999999998 4569999999999876654
No 8
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.3e-113 Score=1041.64 Aligned_cols=595 Identities=25% Similarity=0.369 Sum_probs=458.7
Q ss_pred CCCCcccccccCCccchHHHHHHHHh------CCCCh-------HHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHH
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET------GTHPK-------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK 67 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~------g~~p~-------~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~ 67 (823)
|+||+|+|+|||||||||||++|++. +++|. +|+.++++.|++||++||+++||+++|.|+||+|++
T Consensus 84 m~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~ 163 (912)
T PRK05743 84 MSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEA 163 (912)
T ss_pred ccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHH
Confidence 89999999999999999999999874 45554 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHH
Q 003404 68 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPES 147 (823)
Q Consensus 68 ~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~ 147 (823)
++||+|.+|+++|||||+.+||+|||.|+|+|||+||+++. .
T Consensus 164 ~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~-~------------------------------------- 205 (912)
T PRK05743 164 NIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD-K------------------------------------- 205 (912)
T ss_pred HHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc-c-------------------------------------
Confidence 99999999999999999999999999999999999998651 1
Q ss_pred HHHHHHhhhcccCCeEEEEEeecCCC--CCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHh
Q 003404 148 VKEMQRNWIGRSEGAEMDFRVLDSDG--QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLAS 225 (823)
Q Consensus 148 v~~~q~~wig~s~~~~~~f~~~~~~~--~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (823)
+|..+||+|++.+..- ...+.+++||||||||||||+||||||+++|+......+.-...++++....
T Consensus 206 ----------~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~ 275 (912)
T PRK05743 206 ----------TSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVL 275 (912)
T ss_pred ----------cCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHH
Confidence 4566789999854210 0024689999999999999999999999999755443211101123333322
Q ss_pred ccChhhh-hhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCC
Q 003404 226 RKSDLER-TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 304 (823)
Q Consensus 226 ~~~~~~~-~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~ 304 (823)
....++. ..+...+|..|.|+++.||++++.+||+.++||++++|||+||+|||||++||+++++||||++++|+++ |
T Consensus 276 ~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~-G 354 (912)
T PRK05743 276 ERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDD-G 354 (912)
T ss_pred HhhCCcceEEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCC-c
Confidence 2211211 1233456678999999999999999999999999999999999999999999999999999999999876 4
Q ss_pred CCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCc----------------eeEee---------
Q 003404 305 SSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK----------------KKVNY--------- 359 (823)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~----------------~~~~~--------- 359 (823)
++++..+. +.|+...+|+++|++.|++.|..- ..+.+
T Consensus 355 ~~~~~~~~------------------~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~ 416 (912)
T PRK05743 355 RYTEEAPL------------------FAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFIS 416 (912)
T ss_pred eEecCCcc------------------cCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEe
Confidence 44433333 556666666666666666655431 11111
Q ss_pred ---------------------------------ecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccC
Q 003404 360 ---------------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT 406 (823)
Q Consensus 360 ---------------------------------~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~ 406 (823)
+++||||||||+||+|||+|||++||.++. . ++++..++.+ +.
T Consensus 417 ~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~-~-~~~~~~i~~~--~~ 492 (912)
T PRK05743 417 MDKKGLREQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHP-T-PELIEHVAKL--FE 492 (912)
T ss_pred CChHHHHHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEee-c-HHHHHHHHHH--HH
Confidence 358999999999999999999988876543 2 2333222211 11
Q ss_pred CCCCCCCCCcCCccceee----cccCCCCCccccCCCccccccch--hhhhhhcCCCCChhhhhhhhccccCCceeeecC
Q 003404 407 PTGTGEPPLSKAVSWVQT----TEHSSGKPARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG 480 (823)
Q Consensus 407 ~~g~~~~~l~~~~~w~~~----~~~~~g~~~~re~dt~d~WfdSs--w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G 480 (823)
..|. +.|.+. .||.|+..++||+|||||||||+ |+++... ...+|+|+|+|++|
T Consensus 493 ~~g~--------~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~------------~~~~~~P~Dl~~~G 552 (912)
T PRK05743 493 KEGI--------DAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQ------------RPELGYPADLYLEG 552 (912)
T ss_pred hhCC--------ccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcC------------ccccCCCceEEEec
Confidence 1222 345432 35668889999999999999984 6554321 01357899999999
Q ss_pred hhhHHHHHHHHHHHH-HHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcc
Q 003404 481 AEHAVLHLLYARFWH-KVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMK 559 (823)
Q Consensus 481 ~D~~~~Hlly~rfw~-~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (823)
+||+ |||+ .+++...++.+.+||++|++||||++.
T Consensus 553 ~Di~-------r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~------------------------------------- 588 (912)
T PRK05743 553 SDQH-------RGWFQSSLLTSVATRGKAPYKQVLTHGFTVDG------------------------------------- 588 (912)
T ss_pred cccc-------chHHHHHHHHHHHhcCCCccceeEEeeeEECC-------------------------------------
Confidence 9997 7774 445555455678999999999999863
Q ss_pred cCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHH---HHHHHHHHH
Q 003404 560 SGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV---HRFLGRMWR 636 (823)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~---~~~l~r~~~ 636 (823)
+|+|||||+||+|+|.+++++||||+||||+++ +++++|.+|+++.+.++ +|.|.|+++
T Consensus 589 -----------------~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~~~~~~kl~N~~r 650 (912)
T PRK05743 589 -----------------KGRKMSKSLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQVAEAYRRIRNTLR 650 (912)
T ss_pred -----------------CCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999996 77899999999888764 566777777
Q ss_pred HHHcCCCCCCCCCCCccC--CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHhccc----------c-
Q 003404 637 LIVGSSLPDGTFKGGTVV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE----------K- 702 (823)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~-~~~~~~----------~- 702 (823)
|++++... .......++ .....|+++++++++++++++++|++|+|++|++++++|++ .+++|+ .
T Consensus 651 f~~~nl~~-~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~ 729 (912)
T PRK05743 651 FLLGNLND-FDPAKDAVPYEELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDA 729 (912)
T ss_pred HHHhCccC-CCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCC
Confidence 87765321 111011111 12346889999999999999999999999999999999994 554421 1
Q ss_pred -----------chHHHHHHHHHHhCccchhhHHHHHHHcC--CCCCccccCCCCCCcccc
Q 003404 703 -----------HPRKIIEPFILLLAPYAPHMSEELWFRLG--HSNSLAYESFPKANPDYL 749 (823)
Q Consensus 703 -----------~~~~~l~~l~~lLaPi~P~~aEelw~~L~--~~~sv~~~~WP~~~e~~l 749 (823)
+++.+++.+++||+|||||+|||+|+.|+ .++||+++.||.+++.+.
T Consensus 730 ~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~~~sv~~~~wP~~~~~~~ 789 (912)
T PRK05743 730 ADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGEREESVFLEEWPEVPELAD 789 (912)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCCCCceEEecCCCCccccC
Confidence 23468899999999999999999999994 457999999999876553
No 9
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-112 Score=981.39 Aligned_cols=552 Identities=29% Similarity=0.510 Sum_probs=458.5
Q ss_pred CCCCcccccccCCccchHHHHHHHH-h---CCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-T---GTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~---g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+||+|++++||||+|+|+|..+++ . |++. .+|..++...+++||+|||+|+||+|++.||||.
T Consensus 68 M~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~ 147 (877)
T COG0525 68 MRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPG 147 (877)
T ss_pred cCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHH
Confidence 8999999999999999999988764 3 7653 2688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 144 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w 144 (823)
+.+.+|..|.+||++|||||++++|||||.|+|+||+.||++. +.-|.
T Consensus 148 ~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~--e~~g~------------------------------ 195 (877)
T COG0525 148 LSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYK--EVEGK------------------------------ 195 (877)
T ss_pred HHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhccc--eeeee------------------------------
Confidence 9999999999999999999999999999999999999999853 21121
Q ss_pred hHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHH
Q 003404 145 PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLA 224 (823)
Q Consensus 145 p~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 224 (823)
=.||+|++.+. +.+|+|+|||||||+|++||+|||+++ +|.+
T Consensus 196 ----------------L~~i~y~l~~~-----~~~i~VATTRPEtmlgdtAVaVhP~De---------------RYk~-- 237 (877)
T COG0525 196 ----------------LYYIKYPLADG-----DGYLVVATTRPETLLGDTAVAVHPDDE---------------RYKH-- 237 (877)
T ss_pred ----------------EEEEEEecCCC-----CceEEEEecCccccccceEEEECCCCh---------------hhHh--
Confidence 14899999653 359999999999999999999999996 3443
Q ss_pred hccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCC
Q 003404 225 SRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 304 (823)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~ 304 (823)
|.|.++++|+.|+++||+.++||++++|||+||++|+||++||+++++|+||++++++++ |
T Consensus 238 ------------------LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~d-G 298 (877)
T COG0525 238 ------------------LVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDED-G 298 (877)
T ss_pred ------------------hcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCC-C
Confidence 579999999999999999999999999999999999999999999999999999999987 3
Q ss_pred CCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------------------
Q 003404 305 SSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK---------------------------- 356 (823)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~---------------------------- 356 (823)
++++..+ ..+.||+..+|+++|++.|++.|+..+.
T Consensus 299 ~in~~~~-----------------~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk 361 (877)
T COG0525 299 RINEEAA-----------------GEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVK 361 (877)
T ss_pred eeccCCc-----------------cccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEE
Confidence 3332211 2478899999999999999988863211
Q ss_pred ----------------Ee--------------eecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccC
Q 003404 357 ----------------VN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT 406 (823)
Q Consensus 357 ----------------~~--------------~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~ 406 (823)
++ .+++||||||||+||+|||+|||++||.+++-.+ +|....
T Consensus 362 ~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~--~~~~~~------ 433 (877)
T COG0525 362 VLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE--EPEDPA------ 433 (877)
T ss_pred hHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCc--cccchh------
Confidence 11 1578999999999999999999988887664332 322110
Q ss_pred CCCCCCCCCcCCccceeecccCCCCCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHH
Q 003404 407 PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAV 485 (823)
Q Consensus 407 ~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~ 485 (823)
....|+. ..+++|+|||||||+|+ |+|+..++|..+..+ +.++|.|+.+.|.|++
T Consensus 434 ---------------~~~~~~~--~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l------~~fyPt~llvtG~DII- 489 (877)
T COG0525 434 ---------------AAEKCPK--EELEQDEDVLDTWFSSSLWPFSTLGWPEETPDL------KKFYPTDLLVTGHDII- 489 (877)
T ss_pred ---------------hhccCch--hcccCCcchhhhhhhcccccccccCCCCcchHH------HhcCCCccccccchhh-
Confidence 0112222 45789999999999997 999999999874432 3357999999999998
Q ss_pred HHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCce
Q 003404 486 LHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFF 564 (823)
Q Consensus 486 ~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (823)
|||.+.+...++ .....||+.|+.||||.++
T Consensus 490 ------ffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe------------------------------------------ 521 (877)
T COG0525 490 ------FFWVARMIMRGLHLTGEVPFKDVYIHGLVRDE------------------------------------------ 521 (877)
T ss_pred ------HHHHHHHHHHHHHhcCCCCccEEEEeeeEEcC------------------------------------------
Confidence 999776666554 4567999999999999754
Q ss_pred eeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHH---HHHcC
Q 003404 565 VMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR---LIVGS 641 (823)
Q Consensus 565 ~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~---~~~~~ 641 (823)
+|+|||||+||||||.++|++||+|+||||+++.+..++|+.|+.+.+++.+||++++|| |++.+
T Consensus 522 ------------~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~ 589 (877)
T COG0525 522 ------------QGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMN 589 (877)
T ss_pred ------------CCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 389999999999999999999999999999999889999999999999999999999996 44433
Q ss_pred CCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHhcccc------------------
Q 003404 642 SLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK------------------ 702 (823)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~-~~~~~~~~------------------ 702 (823)
. ....+.+......+..|+|++++++++++.++++|++|+|+.|.++|++|+ +..+.|+.
T Consensus 590 ~-~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~ 668 (877)
T COG0525 590 L-DDLGPDDLDLLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAAR 668 (877)
T ss_pred c-cccCcccccccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCcHHHHHHHH
Confidence 2 111111111111246789999999999999999999999999999999999 55566531
Q ss_pred -chHHHHHHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCcccccc
Q 003404 703 -HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKD 751 (823)
Q Consensus 703 -~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~l~~ 751 (823)
.+..+|+.+++||||||||+|||||+.|....|++.+.||.+++...++
T Consensus 669 ~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~~si~~~~~P~~~~~~~d~ 718 (877)
T COG0525 669 ATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLASWPEVDEELIDE 718 (877)
T ss_pred HHHHHHHHHHHHHhCCCCccchHHHHHhcCCCCeEEeccCCCcchhhccH
Confidence 1236899999999999999999999999877899999999997665543
No 10
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=7.2e-111 Score=1025.20 Aligned_cols=615 Identities=25% Similarity=0.381 Sum_probs=470.7
Q ss_pred CCCCcccccccCCccchHHHHHHHHh-CCC------C----------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET-GTH------P----------KITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~-g~~------p----------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+|||||||||||||++|+|. |++ | ++|+.++++.|++||++||+++||+|+|.||||
T Consensus 71 m~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p 150 (861)
T TIGR00392 71 MQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDP 150 (861)
T ss_pred cCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCH
Confidence 89999999999999999999999875 664 3 478999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++++||+|.+|+++|||||+.++|+|||.|+|+|||+||++|.|||+
T Consensus 151 ~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~------------------------------- 199 (861)
T TIGR00392 151 SYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKD------------------------------- 199 (861)
T ss_pred HHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhccccccc-------------------------------
Confidence 9999999999999999999999999999999999999999999877763
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCC--CcC-cEEEEEcCCcChhhcccEEEECCCCcchhhhccccch-H-HHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQ--ERD-IKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS-Q-NIE 218 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~--~~~-~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~-~-~~~ 218 (823)
+++++++|+|++.+.+.. ..+ .+++||||||||||||+|++|||+++|+......+.. . ..+
T Consensus 200 -------------~~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~ 266 (861)
T TIGR00392 200 -------------VKDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAK 266 (861)
T ss_pred -------------ccCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeH
Confidence 257889999999642210 001 2899999999999999999999999997665432111 0 012
Q ss_pred HHHHHHhccChhhhhhhhhcccceecceEEecCCCCCee------cEEEe-CccccCCCCceEEecCCCChhhHHHHHHc
Q 003404 219 EYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAI------PIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKF 291 (823)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~------pi~~~-~~V~~~~GTG~V~~~P~h~~~D~~~~~~~ 291 (823)
+++.........+...+.+.+|..|.|++|.||++++.+ |++.+ +||++++|||+||+|||||++||+++++|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~ 346 (861)
T TIGR00392 267 KLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKY 346 (861)
T ss_pred HHHHHHHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHc
Confidence 233222211111112234567778999999999999988 98666 99999999999999999999999999999
Q ss_pred CCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee---------------
Q 003404 292 DISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK--------------- 356 (823)
Q Consensus 292 ~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~--------------- 356 (823)
|||++++|+++ |+++...+.|.|.. ..+.|+...+|++.+++.|.+.|..-+.
T Consensus 347 ~l~~~~~vd~~-g~~~~~~~~~~g~~-----------~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~ 414 (861)
T TIGR00392 347 GLEVLSPVDEK-GVYTEGVNDFQGRF-----------VKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKT 414 (861)
T ss_pred CCCcccccCCC-ceECCcCccccccc-----------cccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCC
Confidence 99999888876 44443333344321 1367888888888899988888753110
Q ss_pred ---------------------------Ee--------------eecCceeeeeccccCCcccEEEeCCCCceeeCCCCcc
Q 003404 357 ---------------------------VN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAEL 395 (823)
Q Consensus 357 ---------------------------~~--------------~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~l 395 (823)
++ .+++||||||||+||+|||+|+|++||...+
T Consensus 415 ~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~------ 488 (861)
T TIGR00392 415 PVIYRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIV------ 488 (861)
T ss_pred EEEEecCccccEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcC------
Confidence 00 0479999999999999999999988875422
Q ss_pred CCcCCcc--cccCCCCCCCCCCcCCcc---ceeecccCCCCCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhcc
Q 003404 396 PLTLPEL--DDFTPTGTGEPPLSKAVS---WVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKER 469 (823)
Q Consensus 396 pv~lp~~--~~~~~~g~~~~~l~~~~~---w~~~~~~~~g~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~ 469 (823)
+.+++. ..+...|...++...+.+ |....|++| ..++||+|||||||||+ +|+....+|.+.. ..+
T Consensus 489 -~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~-~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~~------~f~ 560 (861)
T TIGR00392 489 -VGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDG-GEYRRVPDVLDVWFDSGSMPYASIHYPFENE------KFK 560 (861)
T ss_pred -chhHHHHHHHHHHhCCccccccchhhhcCchhccCCCC-cceEEccccccchhhcCcchHHhcCCCCCcc------hhh
Confidence 111110 001112332233334443 444566666 68999999999999996 4444444664432 136
Q ss_pred ccCCceeeecChhhHHHHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCcccccc
Q 003404 470 YWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYE 548 (823)
Q Consensus 470 ~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 548 (823)
+|+|+|+|++|+||+ |||++++...++ +...+||+++++||||++.
T Consensus 561 ~~~P~d~~i~G~Di~-------r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~-------------------------- 607 (861)
T TIGR00392 561 EVFPADFILEGSDQT-------RGWFYSSLAIGTALFGQAPYKNVITHGFTLDE-------------------------- 607 (861)
T ss_pred ccCCceEEEEecchh-------ccHHHHHHHHHHHHcCCCChHhhEecceEECC--------------------------
Confidence 788999999999997 777665555443 3467999999999999853
Q ss_pred ccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHH
Q 003404 549 QESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH 628 (823)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~ 628 (823)
+|+|||||+||+|+|.+++++||+|++|||+++. ++.+|.+|+++.+.++.
T Consensus 608 ----------------------------~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~ 658 (861)
T TIGR00392 608 ----------------------------KGRKMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQVV 658 (861)
T ss_pred ----------------------------CCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHHH
Confidence 3899999999999999999999999999999988 89999999999988766
Q ss_pred H-HHHHHHH---HHH--cCCCCCCCCCCC--ccC--CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-H
Q 003404 629 R-FLGRMWR---LIV--GSSLPDGTFKGG--TVV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA-A 697 (823)
Q Consensus 629 ~-~l~r~~~---~~~--~~~~~~~~~~~~--~~~--~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~-~ 697 (823)
+ +.+.+|| ++. +.. .++.+. ... .....|.+++.+++++++++.++|++|+|+.|++.+++|+.. +
T Consensus 659 ~~~~n~l~N~~~~~~~~~~l---~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l 735 (861)
T TIGR00392 659 EKYRKIRWNTYRFLLTYANL---DKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEEL 735 (861)
T ss_pred HHHHHHHHHHHHHHHHHhcc---ccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5 5555554 443 221 122111 110 123457889999999999999999999999999999999865 4
Q ss_pred hc----------ccc-----------chHHHHHHHHHHhCccchhhHHHHHHHcCCC---CCccccCCCCCCccccc
Q 003404 698 YK----------WEK-----------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS---NSLAYESFPKANPDYLK 750 (823)
Q Consensus 698 ~~----------~~~-----------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~---~sv~~~~WP~~~e~~l~ 750 (823)
++ |.. +..++++.+++||+|||||+|||||+.|+.. +||+.+.||.+++.+.+
T Consensus 736 ~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~~~~~d 812 (861)
T TIGR00392 736 SNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFID 812 (861)
T ss_pred HHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccCCCCceeccCCCCCchhhcC
Confidence 33 211 2347889999999999999999999999753 68999999998775543
No 11
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.2e-111 Score=1023.25 Aligned_cols=617 Identities=24% Similarity=0.340 Sum_probs=449.7
Q ss_pred CCCCcccccccCCccchHHHHHHHHh----CCC------------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET----GTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~----g~~------------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+||+|+|+|||||||||||+++++. |.. |++|+.++++.|++||+|||+++||+|+|.||||+
T Consensus 89 m~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~ 168 (961)
T PRK13804 89 MLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFH 168 (961)
T ss_pred hcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHH
Confidence 89999999999999999999998764 332 34588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 144 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w 144 (823)
|++++||+|.+|+++|||||+.+||+|||.|+|+|||+||++. .+
T Consensus 169 y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~--~~--------------------------------- 213 (961)
T PRK13804 169 AEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYH--DI--------------------------------- 213 (961)
T ss_pred HHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccc--cc---------------------------------
Confidence 9999999999999999999999999999999999999999853 10
Q ss_pred hHHHHHHHHhhhcccCCeEEEEEeecCCCC-CcCcEEEEEcCCcChhhcccEEEECCCCcchhhhcccc---------ch
Q 003404 145 PESVKEMQRNWIGRSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT---------QS 214 (823)
Q Consensus 145 p~~v~~~q~~wig~s~~~~~~f~~~~~~~~-~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~---------~~ 214 (823)
+|.+++|+|++.+..+. ..+.+++||||||||||||+||+|||+++|+.+..... .+
T Consensus 214 -------------~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~ 280 (961)
T PRK13804 214 -------------ESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGER 280 (961)
T ss_pred -------------cCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcE
Confidence 57789999999642210 12368999999999999999999999999976554321 11
Q ss_pred HHH-HHHHHHHhccChhhh-hhhhhcccceecceEEecCCCCC-----eecEEEeCccccCCCCceEEecCCCChhhHHH
Q 003404 215 QNI-EEYKNLASRKSDLER-TELQKEKTGVFSGCYARNPASGE-----AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF 287 (823)
Q Consensus 215 ~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~P~~~~-----~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~ 287 (823)
..+ ++.+........++. ..+...+|+.|.|++|.||++++ .+||+.++||++++|||+||+|||||++||++
T Consensus 281 ~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~ 360 (961)
T PRK13804 281 LVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNV 360 (961)
T ss_pred EEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHH
Confidence 111 222222221111111 22346788899999999999998 89999999999999999999999999999999
Q ss_pred HHHcCC-ceeeeccCCCCCCcccccc--------cccc----------------ceEecccC------------------
Q 003404 288 ALKFDI-SIHSVVMPDDESSSQSEKA--------YTGE----------------GLIVNSSN------------------ 324 (823)
Q Consensus 288 ~~~~~l-~~~~vv~~~~~~~~~~~~~--------~~~~----------------g~~~~~~~------------------ 324 (823)
+++||| |+.++|+++ |++++..+. |.|. |.+.....
T Consensus 361 ~~~~~l~~~~~~vd~~-G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r 439 (961)
T PRK13804 361 WMKYGRTEIPVTVDED-GFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFR 439 (961)
T ss_pred HHHcCCCcccccCCCC-eEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEe
Confidence 999999 999999876 677665555 3331 22211110
Q ss_pred --cccccccCCC-----CHHH-HHHH--HHHHHHHcCCCceeE-eeecCceeeeeccccCCcccEEEeCCCCceeeCCCC
Q 003404 325 --LISGLDINGL-----SCQE-ATSK--VIEWAEKTGNGKKKV-NYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEA 393 (823)
Q Consensus 325 --~~~~~~~~g~-----~~~~-~~~~--v~~~l~~~~~~~~~~-~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~ 393 (823)
.|||++++.. ..++ +.+. -++|+++.+..+..- ..+++||||||||+||+|||+|||+ +|+.++.+
T Consensus 440 ~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~-~~~~~~~~-- 516 (961)
T PRK13804 440 NTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAE-DGEILMDE-- 516 (961)
T ss_pred ccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcC-CCCEeccH--
Confidence 1466665541 1111 1111 122333322111100 1146799999999999999999995 56655322
Q ss_pred ccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccch--hhhhhhcCCCCChhhhhhhhcccc
Q 003404 394 ELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTKERYW 471 (823)
Q Consensus 394 ~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSs--w~yl~~~~p~n~~~~~~~~~~~~w 471 (823)
+++.. ..+.+...|...+......++.... -+|+..++|++|||||||||+ |++.. .+ + ...+
T Consensus 517 ~~~~~--~~~~~~~~g~~~w~~~~~~~~~~~~-~~~~~~~~r~~DvlDvWFdSg~s~~~~~----~~------~--~~~~ 581 (961)
T PRK13804 517 EVNAR--IADAFEEEGADAWFAEGAKERFLGG-FHPNGEFTKVTDILDVWFDSGSTHAFVL----ED------R--PDLK 581 (961)
T ss_pred HHHHH--HHHHHHhcCCccccccCHHHhcCcc-cCcccceEecCcceeeeecCCCCccccc----cC------C--cccC
Confidence 22111 0111222232111111111221110 025678999999999999994 43321 00 0 1234
Q ss_pred CCceeeecChhhHHHHHHHHHHHHH-HHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCcccccccc
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHK-VLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQE 550 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~-~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 550 (823)
+|+|+|++|+||+ |||++ +|.....+.+..||++|++||||++.
T Consensus 582 ~PaD~~~eG~Di~-------rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~---------------------------- 626 (961)
T PRK13804 582 WPADLYLEGSDQH-------RGWFNSSLLESCGTRGRAPYKAVLTHGFTLDE---------------------------- 626 (961)
T ss_pred CCceEEEEEcccc-------cHHHHHHHHHHHHhcCCCChhhEEEeccEECC----------------------------
Confidence 6999999999997 88855 44444445667899999999999863
Q ss_pred ccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHH---
Q 003404 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV--- 627 (823)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~--- 627 (823)
+|+|||||+||+|+|.+++++||||+||||+++ +++++|++|+++.+.++
T Consensus 627 --------------------------~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~~~ 679 (961)
T PRK13804 627 --------------------------KGEKMSKSLGNTVSPQDVIKQSGADILRLWVAS-VDYSDDQRIGKEILKQVSET 679 (961)
T ss_pred --------------------------CCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHh-CCCCCCcccCHHHHHHHHHH
Confidence 389999999999999999999999999999996 57899999999877664
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCc--cC--CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHhccc-
Q 003404 628 HRFLGRMWRLIVGSSLPDGTFKGGT--VV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWE- 701 (823)
Q Consensus 628 ~~~l~r~~~~~~~~~~~~~~~~~~~--~~--~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~-~~~~~~~- 701 (823)
++.|.|++++++++.. ++.+.. .+ .....|++++.++++++++++++|++|+|++|++++++|+ +.+++|+
T Consensus 680 ~~kL~N~~rf~l~nl~---~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yl 756 (961)
T PRK13804 680 YRKLRNTLRWLLGNLA---HFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYF 756 (961)
T ss_pred HHHHHHHHHHHHhccc---cCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665531 222211 01 1234588999999999999999999999999999999999 4543321
Q ss_pred ---------c------------chHHHHHHHHHHhCccchhhHHHHHHHcCC--CCCccccCCCCCCcccc
Q 003404 702 ---------K------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH--SNSLAYESFPKANPDYL 749 (823)
Q Consensus 702 ---------~------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~--~~sv~~~~WP~~~e~~l 749 (823)
. ++..+++.+++||+|||||+|||||++|+. .+||+++.||.+++.+.
T Consensus 757 e~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~~~~~ 827 (961)
T PRK13804 757 DIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETPAFWR 827 (961)
T ss_pred HHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCcchhC
Confidence 1 234789999999999999999999999983 56999999999876544
No 12
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=8.5e-109 Score=1008.19 Aligned_cols=623 Identities=19% Similarity=0.296 Sum_probs=452.9
Q ss_pred CCCCcccccccCCccchHHHHHHHH-hCCC----------------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~g~~----------------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|++++||||||||||.++++ .|++ |++++.++++.|++||+|||+|+||+++|.|+||
T Consensus 137 m~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~ 216 (1205)
T PTZ00427 137 QCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDK 216 (1205)
T ss_pred cCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCH
Confidence 8999999999999999999999875 4532 4678889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++.+||+|.+||++|||||+.++|+|||.|+|+||++||..++..+
T Consensus 217 ~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~-------------------------------- 264 (1205)
T PTZ00427 217 TFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDT-------------------------------- 264 (1205)
T ss_pred HHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccc--------------------------------
Confidence 999999999999999999999999999999999999999995322222
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecC------------------------------C---C---------CCcCcEEE
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDS------------------------------D---G---------QERDIKIT 181 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~------------------------------~---~---------~~~~~~l~ 181 (823)
.+++++|+|++.+. + + ...+.+++
T Consensus 265 --------------~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ll 330 (1205)
T PTZ00427 265 --------------PDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEIL 330 (1205)
T ss_pred --------------cCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEE
Confidence 23445555555321 0 0 01246899
Q ss_pred EEcCCcChhhcccEEEECCCCcchhhhccccc------hHHHHHHHHHHhc-cChhhhhhhhhcccceecceEEecCC--
Q 003404 182 VYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ------SQNIEEYKNLASR-KSDLERTELQKEKTGVFSGCYARNPA-- 252 (823)
Q Consensus 182 v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~P~-- 252 (823)
||||||||||||+||||||+.+|+.+....+. ...++.+...... ..+ -..+...+|..+.|..|.||+
T Consensus 331 iwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~--~~v~~~~~G~~L~g~~Y~pl~~~ 408 (1205)
T PTZ00427 331 AWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVED--LKIVNRFKGKELKGLRYKPLFTN 408 (1205)
T ss_pred EEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccc--cEEEEEeechhhCCCeeeCCccc
Confidence 99999999999999999999999766431111 1222333222110 011 123445678889999999887
Q ss_pred -------CCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCC--c----eeeeccCCCCCCcccccccccc---
Q 003404 253 -------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI--S----IHSVVMPDDESSSQSEKAYTGE--- 316 (823)
Q Consensus 253 -------~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l--~----~~~vv~~~~~~~~~~~~~~~~~--- 316 (823)
.++.+||+.++||++++|||+||+|||||++||++|++||| | ++++|+++ |++++..+.|.|.
T Consensus 409 ~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~-G~~~~~~~~~~G~~v~ 487 (1205)
T PTZ00427 409 FYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDAN-GYFTNEVEEVQNLYIK 487 (1205)
T ss_pred cccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCC-ceecCCCcccCCCCHH
Confidence 36789999999999999999999999999999999999999 2 67788876 6666555555542
Q ss_pred -------------ceEecccC--------------------cccccccCCCCHHHH-HHHHHHHHHHcC-CCce-eEeee
Q 003404 317 -------------GLIVNSSN--------------------LISGLDINGLSCQEA-TSKVIEWAEKTG-NGKK-KVNYK 360 (823)
Q Consensus 317 -------------g~~~~~~~--------------------~~~~~~~~g~~~~~~-~~~v~~~l~~~~-~~~~-~~~~~ 360 (823)
|.+..... .|||++++.+..+.. ..+.++|+++.. .++. ....+
T Consensus 488 dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n 567 (1205)
T PTZ00427 488 EADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKD 567 (1205)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhc
Confidence 22211110 034444432211100 001122332221 0110 01125
Q ss_pred cCceeeeeccccCCcccEEEeCCCCceeeCCC-CccCCcCCcccccCCCCCCCCCCcCCcccee---ecccCCC--CCcc
Q 003404 361 LRDWLFARQRYWGEPIPVVFLDGTGETVPLHE-AELPLTLPELDDFTPTGTGEPPLSKAVSWVQ---TTEHSSG--KPAR 434 (823)
Q Consensus 361 l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~-~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~---~~~~~~g--~~~~ 434 (823)
++|||||||||||||||+|+|++|+..+.+.. ++|.. ++ ...+.. .-+..|++ ..||+++ ..++
T Consensus 568 ~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~-~~-------~~~~~~--dlh~~~iD~~~~~~~~g~~~~~~~ 637 (1205)
T PTZ00427 568 AKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEE-LS-------GVKNIN--DLHRHFIDHIEIKNPKGKTYPKLK 637 (1205)
T ss_pred CccceeeeccccCccceeEEcCCCCeEeccCCHHHHHH-Hh-------ccccch--hhcccccChhhccCCcccccccee
Confidence 78999999999999999999987765554322 11110 00 000000 11233332 2344322 2599
Q ss_pred ccCCCccccccch-hhhhhhcCCCC-ChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcC-ccCCCccc
Q 003404 435 RETSTMPQWAGSC-WYYLRFMDPKN-SKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFK 511 (823)
Q Consensus 435 re~dt~d~WfdSs-w~yl~~~~p~n-~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~ 511 (823)
|++|||||||||+ |+|+..++|.+ .++.| ++|+|+|++++|.||+ |||..+|...+. +....||+
T Consensus 638 r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f-----~~~fPaD~i~eG~Dq~-------rgWf~s~l~~s~~l~~~~PfK 705 (1205)
T PTZ00427 638 RIPEVFDCWFESGSMPYAKVHYPFSTEKEDF-----HKIFPADFIAEGLDQT-------RGWFYTLLVISTLLFDKAPFK 705 (1205)
T ss_pred ecCceEEEEEeCCCChHHHhCCCcccchhhH-----hccCCceEEEEecchh-------ccHHHHHHHHHHHhcCCCCcc
Confidence 9999999999995 88888888874 22222 5678999999999997 999877766654 56789999
Q ss_pred cccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccCh
Q 003404 512 CVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNP 591 (823)
Q Consensus 512 ~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p 591 (823)
+|++||||+++ +|+|||||+||+|+|
T Consensus 706 ~VlvHG~Vld~------------------------------------------------------dG~KMSKSlGNvIDP 731 (1205)
T PTZ00427 706 NLICNGLVLAS------------------------------------------------------DGKKMSKRLKNYPDP 731 (1205)
T ss_pred eeEEccEEEcC------------------------------------------------------CCCCcccCCCCCCCH
Confidence 99999999864 389999999999999
Q ss_pred hHHHHHhCcchheeeeeecCCc-cCCccccccchHH-HHHHHHHHHH---HHHcCCCC--C---CCC--CCCc-cCCCCc
Q 003404 592 DDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSGIEG-VHRFLGRMWR---LIVGSSLP--D---GTF--KGGT-VVNDEE 658 (823)
Q Consensus 592 ~~ii~~yGaD~lRl~ll~~~~~-~~d~~~s~~~i~~-~~~~l~r~~~---~~~~~~~~--~---~~~--~~~~-~~~~~~ 658 (823)
.+++++||||+|||||++.+.. ++|+.|+++.+.. ..++++++|+ |+..+... . ..+ .+.. ......
T Consensus 732 ~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~ 811 (1205)
T PTZ00427 732 LYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNI 811 (1205)
T ss_pred HHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCH
Confidence 9999999999999999977664 7899999998864 5668888776 44432210 0 011 0000 011234
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcccc---------------------chHHHHHHHHHHhCc
Q 003404 659 PTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------------------HPRKIIEPFILLLAP 717 (823)
Q Consensus 659 ~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~---------------------~~~~~l~~l~~lLaP 717 (823)
.|+|++++++++++.++++|++|+|+.|++++++|+..++.|+. .+.++|+.+++||||
T Consensus 812 ~DrWILs~l~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaP 891 (1205)
T PTZ00427 812 MDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAP 891 (1205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccc
Confidence 68999999999999999999999999999999999987766531 134789999999999
Q ss_pred cchhhHHHHHHHcCC--------------------------CCCccccCCCCCCccc
Q 003404 718 YAPHMSEELWFRLGH--------------------------SNSLAYESFPKANPDY 748 (823)
Q Consensus 718 i~P~~aEelw~~L~~--------------------------~~sv~~~~WP~~~e~~ 748 (823)
||||+||+||+.|+. .+|||++.||++++.+
T Consensus 892 f~PfiaEeiyq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~ 948 (1205)
T PTZ00427 892 FTPFITEYIYQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKY 948 (1205)
T ss_pred cchHHHHHHHHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchh
Confidence 999999999999952 2489999999988765
No 13
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.5e-108 Score=1013.07 Aligned_cols=580 Identities=25% Similarity=0.367 Sum_probs=455.4
Q ss_pred CCCCcccccccCCccchHHHHHHHH-----hCCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-----~g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+|++||||||||+|.++++ .|+++ .+|+.++++.|++||++||+++||+|+|.|+||
T Consensus 95 m~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~ 174 (995)
T PTZ00419 95 MKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDE 174 (995)
T ss_pred hcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCH
Confidence 8999999999999999999765432 35443 468999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++++||+|.+||++|||||+.++|||||.|+|+|||+||++. . ++ .+++++++.|++.+..
T Consensus 175 ~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~--~------~~---~~~~~~~~~~~~~~~~------ 237 (995)
T PTZ00419 175 QRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFE--E------IE---KPTKITIPGYDKKVEV------ 237 (995)
T ss_pred HHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccc--c------cc---ccceeecccccccccc------
Confidence 99999999999999999999999999999999999999999743 1 11 1224677777654210
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNL 223 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~ 223 (823)
..=.+++|++.+.+ +.+|+|||||||||+|++||||||++++ |.
T Consensus 238 ---------------g~l~~i~f~l~~~~----~~~l~vaTTrPeTl~g~~avav~P~d~~---------------y~-- 281 (995)
T PTZ00419 238 ---------------GVLWHFAYPLEDSG----QEEIVVATTRIETMLGDVAVAVHPKDER---------------YK-- 281 (995)
T ss_pred ---------------ceeEEEEEeecCCC----CcEEEEEeCCcchhhhCeEEEECCCCcH---------------HH--
Confidence 01137899885321 1389999999999999999999999863 21
Q ss_pred HhccChhhhhhhhhcccceecceEEecCC-CCCeecEEEeC-ccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccC
Q 003404 224 ASRKSDLERTELQKEKTGVFSGCYARNPA-SGEAIPIWVAD-YVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMP 301 (823)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~P~-~~~~~pi~~~~-~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~ 301 (823)
.|.|.++.||+ +++.+||+.++ ||++++|||+||+|||||++||+++++||||++++|++
T Consensus 282 ------------------~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~ 343 (995)
T PTZ00419 282 ------------------KLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTL 343 (995)
T ss_pred ------------------HhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCC
Confidence 15799999999 89999999999 99999999999999999999999999999999999987
Q ss_pred CCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee----------------------
Q 003404 302 DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY---------------------- 359 (823)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~---------------------- 359 (823)
+ |++++..+ .+.|+...+|++.|++.|.+.|...+...+
T Consensus 344 ~-G~~~~~~~------------------~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QW 404 (995)
T PTZ00419 344 D-GKINENGG------------------EFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQW 404 (995)
T ss_pred C-ceEcCCCc------------------ccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCee
Confidence 6 44332222 367788888888888888887765432221
Q ss_pred ------------------------------------ecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCccc
Q 003404 360 ------------------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELD 403 (823)
Q Consensus 360 ------------------------------------~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~ 403 (823)
+++||||||||+||+|||+|||++|| ..++++...+..+.
T Consensus 405 Fi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~-~~~~~~~~~~~~~~--- 480 (995)
T PTZ00419 405 YVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKG-PETDPSDEEPWVVA--- 480 (995)
T ss_pred eEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCC-ccccCCCCceEEEc---
Confidence 58999999999999999999998876 33332222211100
Q ss_pred ccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhh-hhcCCCCChhhhhhhhccccCCceeeecChh
Q 003404 404 DFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYL-RFMDPKNSKELVDKTKERYWSPVDVYVGGAE 482 (823)
Q Consensus 404 ~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl-~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D 482 (823)
....+++.....+ ..|+.|+..++||+|||||||||+++|+ ..++|.+... .++|+|+|+|++|+|
T Consensus 481 -----~~~~~~~~~~~~~--~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~------~~~~~P~d~~~~G~D 547 (995)
T PTZ00419 481 -----RSEEEALEKAKKK--FGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDD------LQRFFPTSLLETGSD 547 (995)
T ss_pred -----CCHHHHHhhhccc--cCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHH------HhhcCCCcEEEechh
Confidence 0001111111111 2245677789999999999999986555 4578876432 267899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCc-cCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccC
Q 003404 483 HAVLHLLYARFWHKVLYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSG 561 (823)
Q Consensus 483 ~~~~Hlly~rfw~~~L~~~~~~-~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (823)
|+ |||.++|..+++. ....||++|++||||+++
T Consensus 548 ii-------~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~--------------------------------------- 581 (995)
T PTZ00419 548 IL-------FFWVARMVMMSLHLTDKLPFKTVFLHAMVRDS--------------------------------------- 581 (995)
T ss_pred HH-------hHHHHHHHHHHHHhcCCCChHHHhccceEECC---------------------------------------
Confidence 97 8998888777763 458999999999999864
Q ss_pred CceeeccCcchhccccccccccCCCCccChhHHHH-------------------------------------HhCcchhe
Q 003404 562 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-------------------------------------EYGADSLR 604 (823)
Q Consensus 562 ~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~-------------------------------------~yGaD~lR 604 (823)
+|+|||||+||||+|.++|+ +||||+||
T Consensus 582 ---------------~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR 646 (995)
T PTZ00419 582 ---------------QGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALR 646 (995)
T ss_pred ---------------CCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHH
Confidence 38999999999999999999 89999999
Q ss_pred eeeeecCCccCCccccccchHHHHHHHHHHHHHH---HcCCCCCCCCCCC-c------cCCCCcchHHHHHHHHHHHHHH
Q 003404 605 LYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGG-T------VVNDEEPTLEQLCTLHKCIAKV 674 (823)
Q Consensus 605 l~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~---~~~~~~~~~~~~~-~------~~~~~~~d~~~~~~l~~~~~~v 674 (823)
||+++.++.++|++|+.+.+.+..+|++++||.+ +++.. ....... . .......|+|++++++++++++
T Consensus 647 ~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v 725 (995)
T PTZ00419 647 FGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLL-KDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEV 725 (995)
T ss_pred HHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999854 33221 1100000 0 0112345899999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHH-HHHhc--------cc----c---------chHHHHHHHHHHhCccchhhHHHHHHHcCC
Q 003404 675 TEEIEGTRFNTGISAMMEFI-NAAYK--------WE----K---------HPRKIIEPFILLLAPYAPHMSEELWFRLGH 732 (823)
Q Consensus 675 ~~~~e~~~f~~ai~~l~~~~-~~~~~--------~~----~---------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~ 732 (823)
+++|++|+|+.|++++++|+ +...+ |. . ++.++++.+++||+|||||+|||||+.|+.
T Consensus 726 ~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~ 805 (995)
T PTZ00419 726 TEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPN 805 (995)
T ss_pred HHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Confidence 99999999999999999985 33322 21 0 234789999999999999999999999973
Q ss_pred ----CCCccccCCCCCCcccc
Q 003404 733 ----SNSLAYESFPKANPDYL 749 (823)
Q Consensus 733 ----~~sv~~~~WP~~~e~~l 749 (823)
.+||+.+.||.+++.+.
T Consensus 806 ~~~~~~si~~~~~P~~~~~~~ 826 (995)
T PTZ00419 806 YLRKSESISIAKYPQPNPGWN 826 (995)
T ss_pred cCCCCCeeeccCCCCCCcccC
Confidence 36899999999876544
No 14
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=7.7e-108 Score=1004.61 Aligned_cols=624 Identities=23% Similarity=0.345 Sum_probs=457.7
Q ss_pred CCCCcccccccCCccchHHHHHHH-HhCCC----------------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAI-ETGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~-~~g~~----------------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+|++||||||||||+++. +.|+. |++++.++++.|++|+++||+|+||+++|.|+||
T Consensus 73 m~G~~V~~~~GwD~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~ 152 (1159)
T PLN02882 73 MTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDP 152 (1159)
T ss_pred cCCCcccccCccCCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCH
Confidence 899999999999999999999986 45764 3467889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++.+||+|.+|+++|||||+.++|+|||.|+|+||++|++.++...
T Consensus 153 ~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~-------------------------------- 200 (1159)
T PLN02882 153 KFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDV-------------------------------- 200 (1159)
T ss_pred HHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccC--------------------------------
Confidence 999999999999999999999999999999999999999995322111
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccc------hHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ------SQNI 217 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~------~~~~ 217 (823)
.+++++|+|++.+.. .+.+++||||||||||||+||||||+..|+.+....++ ...+
T Consensus 201 --------------~~~si~v~F~l~~~~---~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~ 263 (1159)
T PLN02882 201 --------------SDPAVMVSFPIVGDP---DNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRL 263 (1159)
T ss_pred --------------CCcEEEEEEEecCCC---CCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHH
Confidence 467889999996421 24699999999999999999999999999876543111 1122
Q ss_pred HHHHHHHhcc--C-----hh-hhhhhhhcccceecceEEecCC------CCCeecEEEeCccccCCCCceEEecCCCChh
Q 003404 218 EEYKNLASRK--S-----DL-ERTELQKEKTGVFSGCYARNPA------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTR 283 (823)
Q Consensus 218 ~~~~~~~~~~--~-----~~-~~~~~~~~~~~~~~g~~~~~P~------~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~ 283 (823)
+.+....... + .. +-..+.+.+|..|.|.+|.||+ .++.+||+.++||++++|||+||+|||||++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~ 343 (1159)
T PLN02882 264 SALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGED 343 (1159)
T ss_pred HHHHhhhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChh
Confidence 2222211000 0 00 1123456788899999998776 2468999999999999999999999999999
Q ss_pred hHHHHHHcCC-----ceeeeccCCCCCCcccccccccc----------------ceEecccC------------------
Q 003404 284 DHEFALKFDI-----SIHSVVMPDDESSSQSEKAYTGE----------------GLIVNSSN------------------ 324 (823)
Q Consensus 284 D~~~~~~~~l-----~~~~vv~~~~~~~~~~~~~~~~~----------------g~~~~~~~------------------ 324 (823)
||++|++||| |+.++|+++ |++++..+.|.|. |.+.....
T Consensus 344 Dy~v~~~~gl~~~~~~~~~~vd~~-G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~ 422 (1159)
T PLN02882 344 DYRVCLANGIIEKGGNLPVPVDDD-GCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYR 422 (1159)
T ss_pred HHHHHHHcCCCccccCccceECCC-ceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEE
Confidence 9999999999 799999986 6666655555542 22211110
Q ss_pred --cccccccCCCCHHH-HHHHHHHHHHHcCC-Cce-eEeeecCceeeeeccccCCcccEEEeCCCCceeeCCC-CccCCc
Q 003404 325 --LISGLDINGLSCQE-ATSKVIEWAEKTGN-GKK-KVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE-AELPLT 398 (823)
Q Consensus 325 --~~~~~~~~g~~~~~-~~~~v~~~l~~~~~-~~~-~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~-~~lpv~ 398 (823)
.|||++++.++.+. ...+-++|.++... ++. ....+++|||||||||||||||+|+|++++..+++.. ++|.
T Consensus 423 a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~-- 500 (1159)
T PLN02882 423 AVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELE-- 500 (1159)
T ss_pred ecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHH--
Confidence 03444443221110 00111222222211 110 0111578999999999999999999977654554332 2211
Q ss_pred CCcccccCCCCCCCCCCcCCcccee-eccc-CCC---CCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccC
Q 003404 399 LPELDDFTPTGTGEPPLSKAVSWVQ-TTEH-SSG---KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWS 472 (823)
Q Consensus 399 lp~~~~~~~~g~~~~~l~~~~~w~~-~~~~-~~g---~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~ 472 (823)
+. .|.....+ +..|++ .++| +|| ..++|++|||||||||+ |.|+..++|..+.+.|. .++
T Consensus 501 --~~-----~~~~~~dl--h~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~-----~~~ 566 (1159)
T PLN02882 501 --KL-----SGVKVTDL--HRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFE-----KNF 566 (1159)
T ss_pred --HH-----hCCchhhc--cccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhh-----ccC
Confidence 00 01000111 222332 1233 233 36999999999999995 89999999975544442 347
Q ss_pred CceeeecChhhHHHHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccc
Q 003404 473 PVDVYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQES 551 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 551 (823)
|+|++++|+||+ |||+.+|+.++. +....||+++++||||+++
T Consensus 567 PaD~i~eG~Dq~-------RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde----------------------------- 610 (1159)
T PLN02882 567 PADFVAEGLDQT-------RGWFYTLMVLSTALFDKPAFKNLICNGLVLAE----------------------------- 610 (1159)
T ss_pred CceEEEEecchh-------hhHHHHHHHHHHHhcCCCCcceeEEccEEECC-----------------------------
Confidence 999999999997 999988777764 4568999999999999864
Q ss_pred cchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCc-cCCccccccchHHHH-H
Q 003404 552 IPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSGIEGVH-R 629 (823)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~-~~d~~~s~~~i~~~~-~ 629 (823)
+|+|||||+||+|+|.+++++||||+|||||+++... +++..|+++.+.+.. +
T Consensus 611 -------------------------~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~ 665 (1159)
T PLN02882 611 -------------------------DGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKD 665 (1159)
T ss_pred -------------------------CCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHH
Confidence 3899999999999999999999999999999965543 678899988887654 4
Q ss_pred HHHHHHH---HHHcCCCCC-----CCCCCCc---c-CCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Q 003404 630 FLGRMWR---LIVGSSLPD-----GTFKGGT---V-VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAA 697 (823)
Q Consensus 630 ~l~r~~~---~~~~~~~~~-----~~~~~~~---~-~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~ 697 (823)
+++++|| |+..+.... ..+.+.. . ......|+|++++++++++++.++|++|+|++|++++++|++.+
T Consensus 666 ~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~~l 745 (1159)
T PLN02882 666 VFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNL 745 (1159)
T ss_pred HHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 6666665 554432110 1111110 0 01234689999999999999999999999999999999999754
Q ss_pred hccc----------c-----------chHHHHHHHHHHhCccchhhHHHHHHHcCC-----CCCccccCCCCCCcccccc
Q 003404 698 YKWE----------K-----------HPRKIIEPFILLLAPYAPHMSEELWFRLGH-----SNSLAYESFPKANPDYLKD 751 (823)
Q Consensus 698 ~~~~----------~-----------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~-----~~sv~~~~WP~~~e~~l~~ 751 (823)
.+|+ . .+.++|+.+++||+|||||+||+||++|+. .+|||++.||++++.++++
T Consensus 746 sN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~ 825 (1159)
T PLN02882 746 TNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDE 825 (1159)
T ss_pred hHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchhhcch
Confidence 4321 0 234789999999999999999999999974 4699999999988766543
No 15
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.8e-108 Score=989.89 Aligned_cols=557 Identities=28% Similarity=0.460 Sum_probs=450.7
Q ss_pred CCCCcccccccCCccchHHHHHHHH-hCCCCh------------HHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHH
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK 67 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~g~~p~------------~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~ 67 (823)
|+||+|+|++||||||||||++|++ .|++|+ +|+.++++.|++||++||+++||+|+|+|+||+|++
T Consensus 73 ~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~ 152 (800)
T PRK13208 73 MRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRR 152 (800)
T ss_pred cCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHH
Confidence 8999999999999999999999987 598876 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHH
Q 003404 68 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPES 147 (823)
Q Consensus 68 ~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~ 147 (823)
++||+|.+|+++||||++.++|+|||.|+|+|||+||+++ ++
T Consensus 153 ~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~--~~------------------------------------ 194 (800)
T PRK13208 153 ISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYR--ER------------------------------------ 194 (800)
T ss_pred HHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccc--cc------------------------------------
Confidence 9999999999999999999999999999999999999853 32
Q ss_pred HHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhcc
Q 003404 148 VKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRK 227 (823)
Q Consensus 148 v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (823)
.+..++|+|++.+ +.+++|||||||||||++||+|||+++. |.
T Consensus 195 ----------~~~~~~ikf~~~~------~~~l~v~TtrPeTl~g~~ai~v~p~~~~---------------~~------ 237 (800)
T PRK13208 195 ----------EGKLNYIKFPVED------GEEIEIATTRPELLPACVAVVVHPDDER---------------YK------ 237 (800)
T ss_pred ----------cceEEEEEEEecC------CCEEEEEeCCcchhhhCeEEEECCCchH---------------HH------
Confidence 2234689999852 3689999999999999999999999863 21
Q ss_pred ChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCc
Q 003404 228 SDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSS 307 (823)
Q Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~ 307 (823)
.|.|.++.||++++++||+.++||++++|||+||++|+||++||+++++||||++++|+.+ |++.
T Consensus 238 --------------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~-G~~~ 302 (800)
T PRK13208 238 --------------HLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDED-GRMT 302 (800)
T ss_pred --------------HhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCC-ceEe
Confidence 1579999999999999999999999999999999999999999999999999999999865 3222
Q ss_pred cccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------------Eee------
Q 003404 308 QSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK----------------------VNY------ 359 (823)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~----------------------~~~------ 359 (823)
+.. ..++|+.+.+|++++++.|.+.|.+... .+|
T Consensus 303 ~~~------------------g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~ 364 (800)
T PRK13208 303 EAA------------------GKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLD 364 (800)
T ss_pred cCC------------------cccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHH
Confidence 211 2478888899999999999888764321 011
Q ss_pred ----------------------------ecC-ceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCC
Q 003404 360 ----------------------------KLR-DWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 410 (823)
Q Consensus 360 ----------------------------~l~-DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~ 410 (823)
+++ ||||||||+||+|||+|||++||.++...++.+|+. |.
T Consensus 365 ~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~-~~--------- 434 (800)
T PRK13208 365 LKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD-PT--------- 434 (800)
T ss_pred HHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccC-ch---------
Confidence 235 999999999999999999988876543223444332 10
Q ss_pred CCCCCcCCccceeecccCCC-CCccccCCCccccccchhhh-hhhcCCCCChhhhhhhhccccCCceeeecChhhHHHHH
Q 003404 411 GEPPLSKAVSWVQTTEHSSG-KPARRETSTMPQWAGSCWYY-LRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHL 488 (823)
Q Consensus 411 ~~~~l~~~~~w~~~~~~~~g-~~~~re~dt~d~WfdSsw~y-l~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hl 488 (823)
..... ...|+.|| ..++||+|||||||||+|.+ ...++|.+.. ..++|+|+|+|++|+||+.+|+
T Consensus 435 -----~d~~~--~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~------~~~~~~P~d~~~~G~Di~~~w~ 501 (800)
T PRK13208 435 -----KDEPP--GYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDED------LFEKVFPMDLRPQGHDIIRTWL 501 (800)
T ss_pred -----hhccc--cccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChh------hhhhcCCceEEEeecchhhhHH
Confidence 00011 24578887 46999999999999998544 3445565432 2367899999999999996665
Q ss_pred HHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeecc
Q 003404 489 LYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKD 568 (823)
Q Consensus 489 ly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (823)
.+..+++.. +...+||+++++||||++.
T Consensus 502 ~~~l~~~~~------~~~~~Pf~~v~~hg~v~~~---------------------------------------------- 529 (800)
T PRK13208 502 FYTILRAYL------LTGKLPWKNIMISGMVLDP---------------------------------------------- 529 (800)
T ss_pred HHHHHHHHH------hcCCCCcceEEEeeEEECC----------------------------------------------
Confidence 554333222 2346899999999999853
Q ss_pred CcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHcCCCCCCCC
Q 003404 569 NPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTF 648 (823)
Q Consensus 569 ~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~ 648 (823)
+|+|||||+||+|+|.+++++||+|++|||++ .+++++|++|+++.+.++.++++++||++..........
T Consensus 530 --------~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~~~ 600 (800)
T PRK13208 530 --------DGKKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADP 600 (800)
T ss_pred --------CCCCCCCCCCCCCCHHHHHHHcCccHHHHHHh-cCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 38999999999999999999999999999999 888999999999999999999999998753211000000
Q ss_pred CCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-Hhcc----------cc-----------chHH
Q 003404 649 KGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA-AYKW----------EK-----------HPRK 706 (823)
Q Consensus 649 ~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~-~~~~----------~~-----------~~~~ 706 (823)
...........|++++++++++++++.++|++|+|++|++++++|++. +.+| .. .+.+
T Consensus 601 ~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~ 680 (800)
T PRK13208 601 EPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYT 680 (800)
T ss_pred ccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHH
Confidence 000001123458899999999999999999999999999999999865 3221 11 2347
Q ss_pred HHHHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCccccc
Q 003404 707 IIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLK 750 (823)
Q Consensus 707 ~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~l~ 750 (823)
+++.+++||+|||||+|||||+.|+ ++|++.+.||++++.+++
T Consensus 681 ~l~~l~~LLaPf~P~iaEelw~~L~-~~si~~~~wP~~~~~~~~ 723 (800)
T PRK13208 681 VLDTLLRLLAPFLPFITEEVWSWLY-GGSVHRASWPEPDEELID 723 (800)
T ss_pred HHHHHHHHhcccchhhHHHHHHhCC-CCceEeccCCCCCccccc
Confidence 8999999999999999999999998 679999999999876654
No 16
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-106 Score=991.34 Aligned_cols=540 Identities=26% Similarity=0.463 Sum_probs=439.9
Q ss_pred CCCCcccccccCCccchHHHHHHHH-h----CCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-T----GTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~----g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+|++||||||||+|.++.+ . |.++ .+|+.++++.|++||++||+|+||+|+|.|+||
T Consensus 83 m~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~ 162 (1052)
T PRK14900 83 MSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDE 162 (1052)
T ss_pred hcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCH
Confidence 8999999999999999999987654 2 3333 358899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++++||+|.+||++|||||+.++|+|||.|+|+||++||+++. ..
T Consensus 163 ~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e-~~-------------------------------- 209 (1052)
T PRK14900 163 GLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEE-AH-------------------------------- 209 (1052)
T ss_pred HHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccC-CC--------------------------------
Confidence 999999999999999999999999999999999999999998641 01
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNL 223 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~ 223 (823)
.+...+|+|++.+. +.+|+|||||||||||++||+|||+++. |.
T Consensus 210 --------------~~~~~~i~f~l~~~-----~~~l~vaTTrPeTl~~~~avaV~P~~~~---------------y~-- 253 (1052)
T PRK14900 210 --------------QGELWSFAYPLADG-----SGEIVVATTRPETMLGDTAVAVHPLDPR---------------YM-- 253 (1052)
T ss_pred --------------CCeEEEEEEEecCC-----CcEEEEEECchhhhhcceeEEECCCcHH---------------HH--
Confidence 12234799998542 3689999999999999999999999863 21
Q ss_pred HhccChhhhhhhhhcccceecceEEecCCCCCeecEEEe-CccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCC
Q 003404 224 ASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPD 302 (823)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~-~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~ 302 (823)
.|.|.+|.||++++.+||+.. .||++++|||+||++||||++||+++++||||++++|+++
T Consensus 254 ------------------~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~ 315 (1052)
T PRK14900 254 ------------------ALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPD 315 (1052)
T ss_pred ------------------HhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCC
Confidence 157999999999999999853 4799999999999999999999999999999999999876
Q ss_pred CCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee--------------------------
Q 003404 303 DESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK-------------------------- 356 (823)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~-------------------------- 356 (823)
|++++..+. +.|+...+|++.|++.|.+.|...+.
T Consensus 316 -G~~~~~~~~------------------~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWF 376 (1052)
T PRK14900 316 -GRMTAEAGP------------------LAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWY 376 (1052)
T ss_pred -cEEecCCcc------------------cCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEecccee
Confidence 444333332 56666666666666666666554221
Q ss_pred ------------------Ee---------e-----ecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccc
Q 003404 357 ------------------VN---------Y-----KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDD 404 (823)
Q Consensus 357 ------------------~~---------~-----~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~ 404 (823)
+. + +|+||||||||+||+|||+|||++ |.++ ++.+ .
T Consensus 377 i~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~-~~~~-v~~~-~--------- 444 (1052)
T PRK14900 377 VRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD-GHVT-VARE-T--------- 444 (1052)
T ss_pred eehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC-CcEE-eccc-c---------
Confidence 10 1 689999999999999999999965 4332 2111 0
Q ss_pred cCCCCCCCCCCcCCccceeecccCCCCC-ccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCceeeecChh
Q 003404 405 FTPTGTGEPPLSKAVSWVQTTEHSSGKP-ARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAE 482 (823)
Q Consensus 405 ~~~~g~~~~~l~~~~~w~~~~~~~~g~~-~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D 482 (823)
...||+||+. ++|++|||||||||+ |||.++++|.+... .++|+|+|+|++|+|
T Consensus 445 ------------------~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~------~~~~~P~d~~~~G~D 500 (1052)
T PRK14900 445 ------------------PEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDT------LRTFYPTSVMETGHD 500 (1052)
T ss_pred ------------------cccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHH------HHhhCCchhhccccc
Confidence 1357788765 899999999999997 99988999976432 256789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccC
Q 003404 483 HAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSG 561 (823)
Q Consensus 483 ~~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (823)
|+ |||+.+|...++ .....||++|++||||+++
T Consensus 501 ii-------~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~--------------------------------------- 534 (1052)
T PRK14900 501 II-------FFWVARMMMMGLHFMGEVPFRTVYLHPMVRDE--------------------------------------- 534 (1052)
T ss_pred HH-------hHHHHHHHHHHHHhcCCCccceeEecccEECC---------------------------------------
Confidence 97 889888877775 3457899999999999853
Q ss_pred CceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH---
Q 003404 562 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI--- 638 (823)
Q Consensus 562 ~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~--- 638 (823)
+|+|||||+||+|+|.++|++||+|+|||||++.++.++|++|+++.+++..+|++++||..
T Consensus 535 ---------------~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~ 599 (1052)
T PRK14900 535 ---------------KGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFA 599 (1052)
T ss_pred ---------------CCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 28999999999999999999999999999999989999999999999998888999988732
Q ss_pred HcCCCCCCCCC-CCccC---CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHhccc----------c-
Q 003404 639 VGSSLPDGTFK-GGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE----------K- 702 (823)
Q Consensus 639 ~~~~~~~~~~~-~~~~~---~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~-~~~~~~----------~- 702 (823)
..+. ..+. .+..+ .....|.+++++++.++.+++++|++|+|+.|++.+|+|++ .+.+|+ .
T Consensus 600 ~~~~---~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~ 676 (1052)
T PRK14900 600 LMNL---SGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASED 676 (1052)
T ss_pred HHhh---hccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCC
Confidence 2111 1111 11111 12346889999999999999999999999999999999984 333221 0
Q ss_pred ---------chHHHHHHHHHHhCccchhhHHHHHHHcCC-------CCCccccCCCCCCc
Q 003404 703 ---------HPRKIIEPFILLLAPYAPHMSEELWFRLGH-------SNSLAYESFPKANP 746 (823)
Q Consensus 703 ---------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~-------~~sv~~~~WP~~~e 746 (823)
.+.++|+.+++||+|||||+|||||+.|+. .+||+.+.||.+++
T Consensus 677 ~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~ 736 (1052)
T PRK14900 677 PEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE 736 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc
Confidence 234789999999999999999999999963 16899999999865
No 17
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.4e-106 Score=986.57 Aligned_cols=572 Identities=24% Similarity=0.388 Sum_probs=442.0
Q ss_pred CCCCcccccccCCccchHHHHHHHH-----hCCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-----~g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+|+|||||||||+|.++.+ .|+++ .+|+.++++.|++||++||+|+||+|+|.||||
T Consensus 163 m~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~ 242 (1066)
T PLN02381 163 MSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDE 242 (1066)
T ss_pred hCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCH
Confidence 8999999999999999999998865 36543 378999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|++++||+|.+||++|||||+.++|||||.|+|+|||+||++. .+.+..+. ++. .
T Consensus 243 ~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~--d~~~~s~~---------~~~-------------~ 298 (1066)
T PLN02381 243 QRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYI--DIKERTLL---------KVP-------------G 298 (1066)
T ss_pred HHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhh--ccccchhh---------ccc-------------C
Confidence 99999999999999999999999999999999999999999852 11111110 000 1
Q ss_pred ChHHHHHHHHhhhcccCC--eEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHH
Q 003404 144 WPESVKEMQRNWIGRSEG--AEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYK 221 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~--~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~ 221 (823)
||+.+ +.| ++++|++.+. +.+++|+|||||||+|+++++|||+++. |.
T Consensus 299 ~~~~~----------~~g~~~~~~Y~l~~~-----~~~i~vATtRpEti~g~~avaV~P~d~r---------------y~ 348 (1066)
T PLN02381 299 YDKPV----------EFGVLTSFAYPLEGG-----LGEIVVATTRIETMLGDTAIAIHPDDER---------------YK 348 (1066)
T ss_pred CCcce----------eeEEEEEEEEEecCC-----CCEEEEecCCHHHHhcccceeeCCCCcc---------------hh
Confidence 33322 223 3466777521 2479999999999999999999999863 11
Q ss_pred HHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEe-CccccCCCCceEEecCCCChhhHHHHHHcCCceeeecc
Q 003404 222 NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVM 300 (823)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~-~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~ 300 (823)
.|.|.+|.||++++.+||+.+ +||++++|||+||+|||||++||+++++||||++++|+
T Consensus 349 --------------------~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id 408 (1066)
T PLN02381 349 --------------------HLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFT 408 (1066)
T ss_pred --------------------hhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeC
Confidence 257999999999999999875 59999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCce-------------------------
Q 003404 301 PDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK------------------------- 355 (823)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~------------------------- 355 (823)
.+ |++++..+ ..+.|+...+|++.|++.|++.|....
T Consensus 409 ~~-G~~~~~~~-----------------~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~Q 470 (1066)
T PLN02381 409 DD-GKINSNGG-----------------SEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQ 470 (1066)
T ss_pred CC-ceeCCCCc-----------------cccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeeccc
Confidence 86 44433211 125667777777777777777665421
Q ss_pred ----------------------eEe--------------eecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcC
Q 003404 356 ----------------------KVN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTL 399 (823)
Q Consensus 356 ----------------------~~~--------------~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~l 399 (823)
++. .+++|||||||||||+|||+|||..+.. .+.
T Consensus 471 WFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~-------~~~--- 540 (1066)
T PLN02381 471 WFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDD-------QLK--- 540 (1066)
T ss_pred ceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChh-------hcc---
Confidence 111 1689999999999999999999952111 000
Q ss_pred CcccccCCCCC--CCCCCc-CCccceeecccCC-CC--CccccCCCccccccchhhhhh-hcCCCCChhhhhhhhccccC
Q 003404 400 PELDDFTPTGT--GEPPLS-KAVSWVQTTEHSS-GK--PARRETSTMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWS 472 (823)
Q Consensus 400 p~~~~~~~~g~--~~~~l~-~~~~w~~~~~~~~-g~--~~~re~dt~d~WfdSsw~yl~-~~~p~n~~~~~~~~~~~~w~ 472 (823)
..|+ +..... ...+.+...|+.| |. .++||+|||||||||++++++ .++|.+... .++|+
T Consensus 541 -------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~------~~~~~ 607 (1066)
T PLN02381 541 -------ELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDD------LKAFY 607 (1066)
T ss_pred -------cCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHH------HhccC
Confidence 0011 000000 0011122223233 33 489999999999999865554 578875432 26789
Q ss_pred CceeeecChhhHHHHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccc
Q 003404 473 PVDVYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQES 551 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 551 (823)
|+|+|++|.||+ |||.+.|..+|+ +...+||++|++||||+++
T Consensus 608 P~d~~~~G~Dii-------~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~----------------------------- 651 (1066)
T PLN02381 608 PTSVLETGHDIL-------FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDA----------------------------- 651 (1066)
T ss_pred CCeeeeecchhh-------hhHHHHHHHHHHHhCCCCchHHheecceEECC-----------------------------
Confidence 999999999997 999888888876 6778999999999999864
Q ss_pred cchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHH-----------------------------------
Q 003404 552 IPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT----------------------------------- 596 (823)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~----------------------------------- 596 (823)
+|+|||||+||||+|.++|+
T Consensus 652 -------------------------~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~g 706 (1066)
T PLN02381 652 -------------------------HGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNG 706 (1066)
T ss_pred -------------------------CCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCC
Confidence 38999999999999999999
Q ss_pred --HhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH---HcCCCCCCCCCCC-cc--CCCCcchHHHHHHHH
Q 003404 597 --EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGG-TV--VNDEEPTLEQLCTLH 668 (823)
Q Consensus 597 --~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~---~~~~~~~~~~~~~-~~--~~~~~~d~~~~~~l~ 668 (823)
+||||+||||+++.++.+++++|+.+.+.+.++|++++||.+ +++. . ..+.+. .. ......|+|++++++
T Consensus 707 i~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~-~-~~~~~~~~~~~~~~~~~DrWILskL~ 784 (1066)
T PLN02381 707 IAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKL-G-DDYTPPATLSVETMPFSCKWILSVLN 784 (1066)
T ss_pred ccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhc-c-cccCcccccCccccCHHHHHHHHHHH
Confidence 799999999999999899999999999999999999999854 3221 1 111111 01 112346899999999
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH-HHhcc----------cc-------------chHHHHHHHHHHhCccchhhHH
Q 003404 669 KCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKW----------EK-------------HPRKIIEPFILLLAPYAPHMSE 724 (823)
Q Consensus 669 ~~~~~v~~~~e~~~f~~ai~~l~~~~~-~~~~~----------~~-------------~~~~~l~~l~~lLaPi~P~~aE 724 (823)
.++++++++|++|+|+.|+++++.|+. .+++| .. ++..+++.+++||+|||||+||
T Consensus 785 ~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitE 864 (1066)
T PLN02381 785 KAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTE 864 (1066)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 999999999999999999999999863 32221 11 2336899999999999999999
Q ss_pred HHHHHcCC------CCCccccCCCCCCccccc
Q 003404 725 ELWFRLGH------SNSLAYESFPKANPDYLK 750 (823)
Q Consensus 725 elw~~L~~------~~sv~~~~WP~~~e~~l~ 750 (823)
|||+.|+. .+||+.+.||.+++.+.+
T Consensus 865 ELw~~L~~~~~~~~~~SI~~~~~P~~~~~~~d 896 (1066)
T PLN02381 865 ELWQRLPQPKDHTRKDSIMISEYPSAVEAWTN 896 (1066)
T ss_pred HHHHHhhhhccCCCCCeeEeCCCCCCCchhCC
Confidence 99999962 358999999998876543
No 18
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.5e-106 Score=984.39 Aligned_cols=622 Identities=22% Similarity=0.332 Sum_probs=448.8
Q ss_pred CCCCcccccccCCccchHHHHHHHH-hC------CC-------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHH
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-TG------TH-------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYY 66 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~g------~~-------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~ 66 (823)
|+||+|+|+|||||||||||+++.+ .+ ++ +++|+.++++.|++||++||++.||+++|.|+||+|+
T Consensus 67 m~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~ 146 (974)
T PLN02843 67 LQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYE 146 (974)
T ss_pred hcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHH
Confidence 8999999999999999999999854 23 23 3456889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChH
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 146 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~ 146 (823)
+.++|+|.+|+++|||||+.+||+|||.|+|+||++||+++...
T Consensus 147 ~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~~------------------------------------ 190 (974)
T PLN02843 147 AAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGH------------------------------------ 190 (974)
T ss_pred HHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCCc------------------------------------
Confidence 99999999999999999999999999999999999999865211
Q ss_pred HHHHHHHhhhcccCCeEEEEEeecCCC-C----C---cCcEEEEEcCCcChhhcccEEEECCCCcchhhhcccc------
Q 003404 147 SVKEMQRNWIGRSEGAEMDFRVLDSDG-Q----E---RDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT------ 212 (823)
Q Consensus 147 ~v~~~q~~wig~s~~~~~~f~~~~~~~-~----~---~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~------ 212 (823)
.|+++||+|++.+... . . .+.+++||||||||||||+||+|||+.+|+.+.+..+
T Consensus 191 -----------~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~ 259 (974)
T PLN02843 191 -----------VSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDEST 259 (974)
T ss_pred -----------cCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccc
Confidence 3567899999864211 0 0 1258999999999999999999999999976654310
Q ss_pred -----------------c-hHH-HHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEE-eCccccCCCCc
Q 003404 213 -----------------Q-SQN-IEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWV-ADYVLGSYGTG 272 (823)
Q Consensus 213 -----------------~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~-~~~V~~~~GTG 272 (823)
. ... -++++.........+-..+...+|..|.|+++.||++++.+||+. ++||++++|||
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG 339 (974)
T PLN02843 260 SGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTG 339 (974)
T ss_pred cccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCC
Confidence 0 000 011111111000111223445678889999999999999999976 89999999999
Q ss_pred eEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccc-----------------eEecccC-----------
Q 003404 273 AIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEG-----------------LIVNSSN----------- 324 (823)
Q Consensus 273 ~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g-----------------~~~~~~~----------- 324 (823)
+||+|||||++||+++++||||++++|+++ |++++..+.|.|.. .+.....
T Consensus 340 ~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~-G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~ 418 (974)
T PLN02843 340 LVHTAPGHGQEDYITGLKYGLPLLSPVDDA-GKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRT 418 (974)
T ss_pred eEEeCCCCCHHHHHHHHHcCCCcccccCCC-ceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCC
Confidence 999999999999999999999999999986 67766656666632 2221111
Q ss_pred ---------cccccccCCCCHHHHHH--HHHHHHHHcCCCcee-EeeecCceeeeeccccCCcccEEEeCCCCceeeCCC
Q 003404 325 ---------LISGLDINGLSCQEATS--KVIEWAEKTGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE 392 (823)
Q Consensus 325 ---------~~~~~~~~g~~~~~~~~--~v~~~l~~~~~~~~~-~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~ 392 (823)
.|||++++.++.+ +.+ +-++|+++.+..+.. ...+++||||||||+||+|||+|+|.+|++++...+
T Consensus 419 ~~pvi~r~t~QWFi~~~~~k~~-al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~ 497 (974)
T PLN02843 419 KKPTIFRATEQWFASVEGFRQA-ALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLMNEE 497 (974)
T ss_pred CCeEEEEecCceeEeCHHHHHH-HHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEeechh
Confidence 1577765433211 111 113344443322211 112578999999999999999999988886653221
Q ss_pred CccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhhhhhhhccccC
Q 003404 393 AELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWS 472 (823)
Q Consensus 393 ~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~ 472 (823)
.... ..+.+...|++.+.-...+++......+++..++|++|||||||||+..+..... ...++++
T Consensus 498 ~i~~----~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~----------~~~~~~~ 563 (974)
T PLN02843 498 TIAH----VKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLG----------SREGLSY 563 (974)
T ss_pred hHHH----HHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhc----------cccccCC
Confidence 1000 0011122233211111112222222223356799999999999999632221110 0113457
Q ss_pred CceeeecChhhHHHHHHHHHHHHHHHHHhc-CccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccc
Q 003404 473 PVDVYVGGAEHAVLHLLYARFWHKVLYDIG-VVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQES 551 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~-~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 551 (823)
|+|+|++|+||+ |||++++...+ ......||+++++||+|++.
T Consensus 564 PaDl~~eG~Di~-------rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~----------------------------- 607 (974)
T PLN02843 564 PADLYLEGSDQH-------RGWFQSSLLTSVATKGKAPYKSVLTHGFVLDE----------------------------- 607 (974)
T ss_pred Cceeeeeecccc-------chHHHHHHHHHHHhcCCCccceEEEeccEECC-----------------------------
Confidence 999999999997 88865444333 34567899999999999853
Q ss_pred cchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHH---------HhCcchheeeeeecCCccCCcccccc
Q 003404 552 IPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT---------EYGADSLRLYEMFMGPFRDSKTWNTS 622 (823)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~---------~yGaD~lRl~ll~~~~~~~d~~~s~~ 622 (823)
+|+|||||+||+|+|.++++ +||+|+||||+++ ..+.+|++|+.+
T Consensus 608 -------------------------~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~s~~ 661 (974)
T PLN02843 608 -------------------------KGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLIGPQ 661 (974)
T ss_pred -------------------------CCCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccCCCceeCHH
Confidence 38999999999999999999 7999999999995 567789999988
Q ss_pred chHHHHHHHH---HHHHHHHcCCCCCCCCCCCccC--CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-H
Q 003404 623 GIEGVHRFLG---RMWRLIVGSSLPDGTFKGGTVV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-A 696 (823)
Q Consensus 623 ~i~~~~~~l~---r~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~-~ 696 (823)
.+..+.++++ ++++|++++... ... ....+ .....|++++++++++++++.++|++|+|++|++++++|+. .
T Consensus 662 ~l~~~~~~~~kl~n~~rf~lgnl~~-~~~-~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~d 739 (974)
T PLN02843 662 ILKQMSDIYRKLRGTLRYLLGNLHD-WKP-DNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVD 739 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccC-CCc-ccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 8876555554 455566665421 111 11111 12345899999999999999999999999999999999863 2
Q ss_pred Hhc--------c--cc------------chHHHHHHHHHHhCccchhhHHHHHHHcCC------CCCccccCCCCCCccc
Q 003404 697 AYK--------W--EK------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH------SNSLAYESFPKANPDY 748 (823)
Q Consensus 697 ~~~--------~--~~------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~------~~sv~~~~WP~~~e~~ 748 (823)
+.+ | .. ++..+++.+++||+|||||+|||||+.|+. .+||+++.||.+++.+
T Consensus 740 lsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~ 819 (974)
T PLN02843 740 LSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEW 819 (974)
T ss_pred HhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhh
Confidence 322 1 11 234688999999999999999999999974 3589999999987655
Q ss_pred c
Q 003404 749 L 749 (823)
Q Consensus 749 l 749 (823)
.
T Consensus 820 ~ 820 (974)
T PLN02843 820 L 820 (974)
T ss_pred c
Confidence 3
No 19
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1e-105 Score=977.13 Aligned_cols=560 Identities=25% Similarity=0.403 Sum_probs=439.3
Q ss_pred CCCCcccccccCCccchHHHHHHHH----hCCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~----~g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+||+|+|++||||||||+|.++.+ .|+++ .+|+.++++.|++||++||+++||+|+|.|+||+
T Consensus 123 m~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~ 202 (958)
T PLN02943 123 MKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQ 202 (958)
T ss_pred hcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHH
Confidence 8999999999999999999987654 36654 3567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 144 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w 144 (823)
|++++||+|.+||++|||||+.++|||||.|+|+|||+||++.. .
T Consensus 203 ~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e--~--------------------------------- 247 (958)
T PLN02943 203 LSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E--------------------------------- 247 (958)
T ss_pred HHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhccc--c---------------------------------
Confidence 99999999999999999999999999999999999999998531 1
Q ss_pred hHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHH
Q 003404 145 PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLA 224 (823)
Q Consensus 145 p~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 224 (823)
.+..++|+|++.+. .+.+++|||||||||+|++||||||+++. |.+
T Consensus 248 -------------~~~~~~i~f~l~~~----~~~~l~vaTTrPeTl~~~~avavnP~d~r---------------y~~-- 293 (958)
T PLN02943 248 -------------PGTLYYIKYRVAGG----SEDFLTIATTRPETLFGDVAIAVNPEDDR---------------YSK-- 293 (958)
T ss_pred -------------cccEEEEEEEEcCC----CCCEEEEEeCChhhhhcceEEEECCCCHH---------------HHH--
Confidence 23457999999642 13689999999999999999999999972 211
Q ss_pred hccChhhhhhhhhcccceecceEEecCCC-CCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCC
Q 003404 225 SRKSDLERTELQKEKTGVFSGCYARNPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDD 303 (823)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~P~~-~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~ 303 (823)
+.|.+++||++ |+.+||+.++||++++|||+||++||||++||+++++||||++++++++
T Consensus 294 ------------------l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~- 354 (958)
T PLN02943 294 ------------------YIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD- 354 (958)
T ss_pred ------------------HcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCC-
Confidence 36889999997 9999999999999999999999999999999999999999999999876
Q ss_pred CCCccccccc------------cccceEecccC--------------------cccccccCCCCHHHHHHHHHHHHHHcC
Q 003404 304 ESSSQSEKAY------------TGEGLIVNSSN--------------------LISGLDINGLSCQEATSKVIEWAEKTG 351 (823)
Q Consensus 304 ~~~~~~~~~~------------~~~g~~~~~~~--------------------~~~~~~~~g~~~~~~~~~v~~~l~~~~ 351 (823)
|++++..+.| ...|.+..... .|||++++. -++++++++....
T Consensus 355 G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~-----l~~~~l~~v~~~~ 429 (958)
T PLN02943 355 GTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP-----LAEKALKAVENGE 429 (958)
T ss_pred ceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHH-----HHHHHHHHHhcCC
Confidence 5565444333 12243332211 146655442 2333333332110
Q ss_pred CC------cee---EeeecCceeeeeccccCCcccEEEe--CCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCcc
Q 003404 352 NG------KKK---VNYKLRDWLFARQRYWGEPIPVVFL--DGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVS 420 (823)
Q Consensus 352 ~~------~~~---~~~~l~DW~ISRQr~WG~PIPi~~~--~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~ 420 (823)
.. +.. ...+++||||||||+||+|||+||| .+|+....+..+. .+
T Consensus 430 i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~------------------------~~ 485 (958)
T PLN02943 430 LTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSA------------------------EE 485 (958)
T ss_pred cEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcH------------------------HH
Confidence 00 000 1126899999999999999999998 3455322221110 12
Q ss_pred ceeecccCCCCC--ccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHH
Q 003404 421 WVQTTEHSSGKP--ARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKV 497 (823)
Q Consensus 421 w~~~~~~~~g~~--~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~ 497 (823)
+....++.||.. ++|++|||||||||+ |||..+++|...++. .++|+|+|++++|+||+ |||...
T Consensus 486 ~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~-----~~~~yP~dl~~~G~Dii-------~fW~a~ 553 (958)
T PLN02943 486 ALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAED-----FKKFYPTTVLETGHDIL-------FFWVAR 553 (958)
T ss_pred HHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHH-----HhccCCCeEEEEeehHH-------HHHHHH
Confidence 222334567765 789999999999997 899888988743221 26788999999999997 899988
Q ss_pred HHHhcCc-cCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccc
Q 003404 498 LYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIA 576 (823)
Q Consensus 498 L~~~~~~-~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (823)
+...|+. .+..||++++.||++++.
T Consensus 554 m~~~~~~~~~~~Pf~~v~~hg~v~~~------------------------------------------------------ 579 (958)
T PLN02943 554 MVMMGIEFTGTVPFSYVYLHGLIRDS------------------------------------------------------ 579 (958)
T ss_pred HHHhhhhhcCCCChheEEEeccEECC------------------------------------------------------
Confidence 7777764 457799999999999853
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHH---HHHcCCCCC--------
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR---LIVGSSLPD-------- 645 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~---~~~~~~~~~-------- 645 (823)
+|+|||||+||+|+|.+++++||+|++|||+++.+ +++|++|+++.+.+..++++++|| |+.++....
T Consensus 580 ~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~-~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~ 658 (958)
T PLN02943 580 QGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGT-AGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEH 658 (958)
T ss_pred CCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 38999999999999999999999999999999754 589999999999998889999988 554432110
Q ss_pred ---CCCCCCcc--CCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHhcccc-----------------
Q 003404 646 ---GTFKGGTV--VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK----------------- 702 (823)
Q Consensus 646 ---~~~~~~~~--~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~-~~~~~~~~----------------- 702 (823)
..+ ++.. ......|+|+++++++++++++++|++|+|+.|++++|+|+ +.+.+|+.
T Consensus 659 ~~~~~~-~~~~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~ 737 (958)
T PLN02943 659 ILACKF-DKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALS 737 (958)
T ss_pred cccccC-CccccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHH
Confidence 001 1110 01235689999999999999999999999999999999996 44444310
Q ss_pred ----chHHHHHHHHHHhCccchhhHHHHHHHcCC-CCCccccCCCCCC
Q 003404 703 ----HPRKIIEPFILLLAPYAPHMSEELWFRLGH-SNSLAYESFPKAN 745 (823)
Q Consensus 703 ----~~~~~l~~l~~lLaPi~P~~aEelw~~L~~-~~sv~~~~WP~~~ 745 (823)
++..+++.+++||+|||||+|||||+.|+. .+|++.+.||.++
T Consensus 738 ~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~~~si~~~~wP~~~ 785 (958)
T PLN02943 738 RAQAVLLYVFENILKLLHPFMPFVTEELWQALPYRKEALIVSPWPQTS 785 (958)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCCCCceeecCCCCCc
Confidence 123678999999999999999999999974 4589999999975
No 20
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.3e-104 Score=964.48 Aligned_cols=539 Identities=28% Similarity=0.476 Sum_probs=439.1
Q ss_pred CCCCcccccccCCccchHHHHHHHH----hCCCCh------------HHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE----TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~----~g~~p~------------~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+||+|+|++||||||||+|.++.+ .|+++. +|+.++++.+++||++||+|+||+|+|.||||+
T Consensus 71 m~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~ 150 (874)
T PRK05729 71 MQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEG 150 (874)
T ss_pred hCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHH
Confidence 8999999999999999999887644 366654 468999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 144 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w 144 (823)
|.+++||+|.+||++|||||+.++|||||.|+|+|||+||++. ..
T Consensus 151 ~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~--~~--------------------------------- 195 (874)
T PRK05729 151 LSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYK--EV--------------------------------- 195 (874)
T ss_pred HHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccc--cc---------------------------------
Confidence 9999999999999999999999999999999999999999853 11
Q ss_pred hHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHH
Q 003404 145 PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLA 224 (823)
Q Consensus 145 p~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 224 (823)
.+..++++|++.+. +.+|+|||||||||+|++||||||+++. |.
T Consensus 196 -------------~~~~~~i~f~~~~~-----~~~l~vaTtrPeTl~~~~avaV~P~d~r---------------y~--- 239 (874)
T PRK05729 196 -------------KGKLWHIRYPLADG-----SDYLVVATTRPETMLGDTAVAVNPEDER---------------YK--- 239 (874)
T ss_pred -------------cceEEEEEEEecCC-----CcEEEEEeCCcchhhcCeeEeECCCccH---------------HH---
Confidence 23457899999642 4799999999999999999999999863 21
Q ss_pred hccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCC
Q 003404 225 SRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 304 (823)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~ 304 (823)
.|.|.++.||++++.+||+.++||++++|||+||++||||++||+++++||||++++++++ |
T Consensus 240 -----------------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~-G 301 (874)
T PRK05729 240 -----------------HLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDED-G 301 (874)
T ss_pred -----------------HhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCC-C
Confidence 2579999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------------------
Q 003404 305 SSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK---------------------------- 356 (823)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~---------------------------- 356 (823)
++++..+. +.||...+|++.|++.|.+.|.....
T Consensus 302 ~~~~~~~~------------------~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~ 363 (874)
T PRK05729 302 TINENPGE------------------YQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVK 363 (874)
T ss_pred eEcCCCcc------------------cCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEe
Confidence 55544444 44555555555555555555442110
Q ss_pred ----------------E--------------eeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccC
Q 003404 357 ----------------V--------------NYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT 406 (823)
Q Consensus 357 ----------------~--------------~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~ 406 (823)
+ ..+++||||||||+||+|||+|+|.+ +. ++|..+..
T Consensus 364 ~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~-~~-~~v~~~~~----------- 430 (874)
T PRK05729 364 MKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED-GE-VYVGREEP----------- 430 (874)
T ss_pred hHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC-Cc-EEeCCccc-----------
Confidence 0 01589999999999999999999965 43 33322210
Q ss_pred CCCCCCCCCcCCccceeecccCCCCCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHH
Q 003404 407 PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAV 485 (823)
Q Consensus 407 ~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~ 485 (823)
..|+ ...++||+|||||||||+ |+|...++|.+... .++|+|+|++++|+||+
T Consensus 431 -----------------~~~~--~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~------~~~~~P~d~~~~G~Dii- 484 (874)
T PRK05729 431 -----------------EARE--KALLTQDEDVLDTWFSSALWPFSTLGWPEKTED------LKRFYPTSVLVTGFDII- 484 (874)
T ss_pred -----------------cccc--ccCeEeCCceecceecCCccHHHHhCCCCCcHH------HHhcCCccccccccccc-
Confidence 0011 124899999999999986 88888888865432 25678999999999997
Q ss_pred HHHHHHHHHHHHHHHhcCc-cCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCce
Q 003404 486 LHLLYARFWHKVLYDIGVV-STKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFF 564 (823)
Q Consensus 486 ~Hlly~rfw~~~L~~~~~~-~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (823)
|||+.+|...++. ....||+++++||||++.
T Consensus 485 ------~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~------------------------------------------ 516 (874)
T PRK05729 485 ------FFWVARMIMMGLHFTGQVPFKDVYIHGLVRDE------------------------------------------ 516 (874)
T ss_pred ------chHHHHHHHHHHHhcCCCchhheEEeeeEECC------------------------------------------
Confidence 8998888777753 457899999999999853
Q ss_pred eeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH---HcC
Q 003404 565 VMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGS 641 (823)
Q Consensus 565 ~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~---~~~ 641 (823)
+|+|||||+||+|+|.+++++||+|+||||+++.++.++|++|+++.+.++.++++++||.. ..+
T Consensus 517 ------------~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~ 584 (874)
T PRK05729 517 ------------QGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMN 584 (874)
T ss_pred ------------CCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999999999888999999999999999999999988743 222
Q ss_pred CCCCCCCCCCccC---CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHhccc----------------
Q 003404 642 SLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE---------------- 701 (823)
Q Consensus 642 ~~~~~~~~~~~~~---~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~-~~~~~~---------------- 701 (823)
. ..+..+... .....|+|++.+++++++.+.++|++|+|+.|++.+++|+. ..++|+
T Consensus 585 ~---~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~~~~~~~~ 661 (874)
T PRK05729 585 L---EGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQEAAKRAT 661 (874)
T ss_pred c---ccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 1 111111111 12345889999999999999999999999999999999983 444321
Q ss_pred -cchHHHHHHHHHHhCccchhhHHHHHHHcCCC---CCccccCCCCCCccc
Q 003404 702 -KHPRKIIEPFILLLAPYAPHMSEELWFRLGHS---NSLAYESFPKANPDY 748 (823)
Q Consensus 702 -~~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~---~sv~~~~WP~~~e~~ 748 (823)
..+.++++.+++||+|||||+|||||+.|+.. +|++.++||++++.+
T Consensus 662 ~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~~~~~si~~~~~P~~~~~~ 712 (874)
T PRK05729 662 RATLAYVLEQILRLLHPFMPFITEELWQKLAPLGIEESIMLAPWPEADEAI 712 (874)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHhcccCCCCCceeecCCCCCCccc
Confidence 02347899999999999999999999999753 379999999987654
No 21
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=6.3e-104 Score=963.03 Aligned_cols=548 Identities=28% Similarity=0.485 Sum_probs=440.4
Q ss_pred CCCCcccccccCCccchHHHHHHHH----hCCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~----~g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+||+|++++||||||||||.++.+ .|.++ .+|+.++++.+++||++||+|+||+|+|.|+||+
T Consensus 68 m~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~ 147 (861)
T TIGR00422 68 MKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEG 147 (861)
T ss_pred hcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHH
Confidence 8999999999999999999998765 24444 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW 144 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w 144 (823)
|.+++||+|.+||++||||++.++|+|||.|+|+||++||++.. +
T Consensus 148 ~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~--~--------------------------------- 192 (861)
T TIGR00422 148 LSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKE--V--------------------------------- 192 (861)
T ss_pred HHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhccc--c---------------------------------
Confidence 99999999999999999999999999999999999999997531 1
Q ss_pred hHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHH
Q 003404 145 PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLA 224 (823)
Q Consensus 145 p~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 224 (823)
+...++++|++.+. .+.+|+|||||||||+|++||||||++++ |.
T Consensus 193 -------------~~~~~~i~f~~~~~----~~~~l~vaTtrPeTl~~~~av~V~P~~~r---------------y~--- 237 (861)
T TIGR00422 193 -------------KGKLYYIRYPLANG----SKDYLVVATTRPETMFGDTAVAVHPEDER---------------YK--- 237 (861)
T ss_pred -------------cceEEEEEEEecCC----CCCEEEEEeCCcchhhhCeEEEECCCchH---------------HH---
Confidence 23446899999642 13699999999999999999999999863 21
Q ss_pred hccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCC
Q 003404 225 SRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 304 (823)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~ 304 (823)
.|.|.++.||++++++||+.++||++++|||+||+|||||++||+++++||||++++++.+ |
T Consensus 238 -----------------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~-G 299 (861)
T TIGR00422 238 -----------------HLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDED-G 299 (861)
T ss_pred -----------------HhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCC-C
Confidence 2679999999999999999999999999999999999999999999999999999999876 5
Q ss_pred CCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCce-----------------------------
Q 003404 305 SSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK----------------------------- 355 (823)
Q Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~----------------------------- 355 (823)
++++..+. +.|+...+|++++++.|.+.|....
T Consensus 300 ~~~~~~~~------------------~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~ 361 (861)
T TIGR00422 300 LLNENAGK------------------YQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVK 361 (861)
T ss_pred eEcCCCcc------------------cCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEe
Confidence 44444443 4556666666666666655553211
Q ss_pred ---------------eEe--------------eecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccC
Q 003404 356 ---------------KVN--------------YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT 406 (823)
Q Consensus 356 ---------------~~~--------------~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~ 406 (823)
.+. .+++||||||||+||+|||+|+|++|+.++...++..+.. |
T Consensus 362 ~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~-~------ 434 (861)
T TIGR00422 362 VEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDD-K------ 434 (861)
T ss_pred cHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhh-h------
Confidence 011 1589999999999999999999988775543322211110 0
Q ss_pred CCCCCCCCCcCCccceeecccCCC--CCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCceeeecChhh
Q 003404 407 PTGTGEPPLSKAVSWVQTTEHSSG--KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEH 483 (823)
Q Consensus 407 ~~g~~~~~l~~~~~w~~~~~~~~g--~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~ 483 (823)
.+|| ..++|++|||||||||+ |||...++|.++.+ .++|+|+|++++|+|+
T Consensus 435 --------------------~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~------~~~~~P~d~~~~G~Di 488 (861)
T TIGR00422 435 --------------------TNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKD------LKKFYPTDLLVTGYDI 488 (861)
T ss_pred --------------------hccCCcccEEECCCcccceeccchHHHHHhCCCCChHH------HhhcCCcceeecchhh
Confidence 0123 46899999999999997 66666788865422 2567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCC
Q 003404 484 AVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGD 562 (823)
Q Consensus 484 ~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (823)
+ |||..++...++ +....||+++++||||++.
T Consensus 489 i-------~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~---------------------------------------- 521 (861)
T TIGR00422 489 I-------FFWVARMIFRSLALTGQVPFKEVYIHGLVRDE---------------------------------------- 521 (861)
T ss_pred h-------hHHHHHHHHHHHHhcCCCchheEEEeeEEECC----------------------------------------
Confidence 8 556554444433 3457899999999999853
Q ss_pred ceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH---H
Q 003404 563 FFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---V 639 (823)
Q Consensus 563 ~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~---~ 639 (823)
+|+|||||+||+|+|.+++++||+|++|||+++.++.++|.+|+++.+.++++|++++||.. .
T Consensus 522 --------------~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~ 587 (861)
T TIGR00422 522 --------------QGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVL 587 (861)
T ss_pred --------------CCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 28999999999999999999999999999999888889999999999999999999999833 2
Q ss_pred cCCCCCC-CCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHhccc----------c-----
Q 003404 640 GSSLPDG-TFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWE----------K----- 702 (823)
Q Consensus 640 ~~~~~~~-~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~-~~~~~~~----------~----- 702 (823)
... ... ..... .......|+|+++++++++++++++|++|+|+.|++++++|+ +...+|+ .
T Consensus 588 ~~~-~~~~~~~~~-~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~~~~~ 665 (861)
T TIGR00422 588 MNL-SDDLELSGG-EEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEK 665 (861)
T ss_pred hcc-ccccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCCcHHH
Confidence 111 100 01000 011234688999999999999999999999999999999996 4444321 0
Q ss_pred -----chHHHHHHHHHHhCccchhhHHHHHHHcCCC-CCccccCCCCCCccccc
Q 003404 703 -----HPRKIIEPFILLLAPYAPHMSEELWFRLGHS-NSLAYESFPKANPDYLK 750 (823)
Q Consensus 703 -----~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~-~sv~~~~WP~~~e~~l~ 750 (823)
.+.++++.+++||+|||||+|||||+.|+.. +||+.+.||.+++.+.+
T Consensus 666 ~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~~~si~~~~~P~~~~~~~d 719 (861)
T TIGR00422 666 KAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEGADSIMLQSYPVVDAEFVD 719 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcccCCceeecCCCCcccccCC
Confidence 1347899999999999999999999999754 69999999998875543
No 22
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-104 Score=869.82 Aligned_cols=616 Identities=22% Similarity=0.316 Sum_probs=456.1
Q ss_pred CCCCcccccccCCccchHHH-HHHHHh------CCCC-------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHH
Q 003404 1 MQGYNVLHPMGWDAFGLPAE-QYAIET------GTHP-------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYY 66 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE-~~a~~~------g~~p-------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~ 66 (823)
++|++|+|++|||||||||| .+|.+. .++| +.++.+.|++|++.|+|||++.||+++|.|+||+|+
T Consensus 90 aqg~~alyvpGwDchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye 169 (937)
T KOG0433|consen 90 AQGKSALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYE 169 (937)
T ss_pred hcCceeccCCCCCcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHH
Confidence 58999999999999999999 677652 1344 357889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChH
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 146 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~ 146 (823)
..+..+|.+||+||||||+.+||+|+|+++||||++|+||+..+
T Consensus 170 ~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH------------------------------------ 213 (937)
T KOG0433|consen 170 AAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNH------------------------------------ 213 (937)
T ss_pred HHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCC------------------------------------
Confidence 99999999999999999999999999999999999999976443
Q ss_pred HHHHHHHhhhcccCCeEEEEEeecCC-------CCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHH
Q 003404 147 SVKEMQRNWIGRSEGAEMDFRVLDSD-------GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEE 219 (823)
Q Consensus 147 ~v~~~q~~wig~s~~~~~~f~~~~~~-------~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~ 219 (823)
.|.++|++|++.+.. +...+.+++||||||||||+|.|||+||+..|+.+...... .-+-
T Consensus 214 -----------~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~--~~~~ 280 (937)
T KOG0433|consen 214 -----------QSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNP--TSTF 280 (937)
T ss_pred -----------cceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCC--cceE
Confidence 577889999986432 12235899999999999999999999999999655544110 0001
Q ss_pred HHHHHhccChhhh------hhhhhcccceecceEEecCCCC-CeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcC
Q 003404 220 YKNLASRKSDLER------TELQKEKTGVFSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD 292 (823)
Q Consensus 220 ~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~P~~~-~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~ 292 (823)
|+.+.....+++. ...+..++..+.|.+|.||+.+ ...|++.++||+++.|||+||+|||||++||.+|.++|
T Consensus 281 ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~ 360 (937)
T KOG0433|consen 281 YLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKG 360 (937)
T ss_pred EEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcC
Confidence 1111111111221 1233456777899999999754 68999999999999999999999999999999999999
Q ss_pred CceeeeccCCCCCCcccc-cccccc-----c-------------------------------eEecccCcccccccCCCC
Q 003404 293 ISIHSVVMPDDESSSQSE-KAYTGE-----G-------------------------------LIVNSSNLISGLDINGLS 335 (823)
Q Consensus 293 l~~~~vv~~~~~~~~~~~-~~~~~~-----g-------------------------------~~~~~~~~~~~~~~~g~~ 335 (823)
||+.++||.. |+++..+ +.+.|+ | +++... -|||+++.+++
T Consensus 361 l~~~s~VD~~-G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAs-eQWFi~~e~~k 438 (937)
T KOG0433|consen 361 LRVESFVDSR-GCYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRAS-EQWFIDVEEIK 438 (937)
T ss_pred CCcccccCCC-CceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecc-hhheeeHHhhh
Confidence 9999999987 6665543 345443 2 111111 16999888765
Q ss_pred HHHH-HHHHHHHHHHcCCCceeE-eeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCC
Q 003404 336 CQEA-TSKVIEWAEKTGNGKKKV-NYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEP 413 (823)
Q Consensus 336 ~~~~-~~~v~~~l~~~~~~~~~~-~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~ 413 (823)
.... ...-+++.+..+..+... .-..++|||||||.||+|||++|.+..+.++..++ .+.+. ....+.+|+..+
T Consensus 439 ~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~-~~~h~---~~~~eqeGsD~W 514 (937)
T KOG0433|consen 439 KRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSL-IEWHA---KLTREQEGSDVW 514 (937)
T ss_pred hHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHH-HHHHH---HHHHHHhCCcce
Confidence 4321 222344555444332221 22457999999999999999999988766554332 11111 112344566433
Q ss_pred CCcCCccceee----cccCCCCCccccCCCccccccc--hhhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHHH
Q 003404 414 PLSKAVSWVQT----TEHSSGKPARRETSTMPQWAGS--CWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLH 487 (823)
Q Consensus 414 ~l~~~~~w~~~----~~~~~g~~~~re~dt~d~WfdS--sw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~H 487 (823)
.....++|... ..+....++.|.|||||+|||| ||.+..- . +.-.++|+|++|.||.
T Consensus 515 w~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~-----------~---~~~~~aDv~LEG~DQ~--- 577 (937)
T KOG0433|consen 515 WEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLD-----------N---EREHVADVYLEGVDQF--- 577 (937)
T ss_pred EeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeecC-----------C---CCCcceeeEEecchhc---
Confidence 22222333321 1123445689999999999987 5865421 0 1114799999999996
Q ss_pred HHHHHHHH-HHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceee
Q 003404 488 LLYARFWH-KVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVM 566 (823)
Q Consensus 488 lly~rfw~-~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (823)
|+|+ +.|...-++..+.||+.|++|||++++
T Consensus 578 ----rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE-------------------------------------------- 609 (937)
T KOG0433|consen 578 ----RGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDE-------------------------------------------- 609 (937)
T ss_pred ----chHHHHHHHHHHHHhccCCchheeeeeeEecC--------------------------------------------
Confidence 9996 456676677788999999999999875
Q ss_pred ccCcchhccccccccccCCCCccChhHHHHH------hCcchheeeeeecCCccCCccccccchH---HHHHHHHHHHHH
Q 003404 567 KDNPNIRLIARAHKMSKSRGNVVNPDDVVTE------YGADSLRLYEMFMGPFRDSKTWNTSGIE---GVHRFLGRMWRL 637 (823)
Q Consensus 567 ~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~------yGaD~lRl~ll~~~~~~~d~~~s~~~i~---~~~~~l~r~~~~ 637 (823)
+|.|||||+||||+|+.+++. ||+|+||||++... ...+.....+-+. ...+.+++++||
T Consensus 610 ----------~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~-~t~d~~iGp~il~qv~e~l~K~R~T~Rf 678 (937)
T KOG0433|consen 610 ----------NGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSE-NTGESKIGPKILDQVDEKLIKFRNTFRF 678 (937)
T ss_pred ----------CccchhhcccCcCCHHHHhCCcccCCCccccceeeeeeccc-ccCceecCHHHHHHHHHHHHHHHhHHHH
Confidence 389999999999999999998 99999999999443 4444445554444 455678889999
Q ss_pred HHcCCCCCCCCCCCc--cCC--CCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-Hhcc----------c-
Q 003404 638 IVGSSLPDGTFKGGT--VVN--DEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA-AYKW----------E- 701 (823)
Q Consensus 638 ~~~~~~~~~~~~~~~--~~~--~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~-~~~~----------~- 701 (823)
++++. .++..+. ++. ....|..++.+++++.+++.+.|++|+|+++++.+..|++. ++.. .
T Consensus 679 llGnl---~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~ 755 (937)
T KOG0433|consen 679 LLGNL---QDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCD 755 (937)
T ss_pred Hhhcc---cccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcC
Confidence 98875 2333321 111 23347788999999999999999999999999999999864 3331 0
Q ss_pred -----------cchHHHHHHHHHHhCccchhhHHHHHHHcCC-CCCccccCCCCCCccccc
Q 003404 702 -----------KHPRKIIEPFILLLAPYAPHMSEELWFRLGH-SNSLAYESFPKANPDYLK 750 (823)
Q Consensus 702 -----------~~~~~~l~~l~~lLaPi~P~~aEelw~~L~~-~~sv~~~~WP~~~e~~l~ 750 (823)
..+..++..++..++||+||++||+||.|+. .+-++...||..++.++.
T Consensus 756 ~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~~~~~f~~k~~~l~s~~~~ 816 (937)
T KOG0433|consen 756 KVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLHSGLLT 816 (937)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhCCCCCCcccccCccccchhhcC
Confidence 1234788999999999999999999999973 345888999998876653
No 23
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.5e-102 Score=940.27 Aligned_cols=598 Identities=26% Similarity=0.427 Sum_probs=451.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHh---------------CC---------CChHHHHHHHHHHHHHHHHhcCcccCCC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET---------------GT---------HPKITTLRNINRFRTQLKSLGFSYDWNR 56 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~---------------g~---------~p~~~~~~~i~~~~~~~~~lG~~~Dw~~ 56 (823)
|+||+|+|||||||||||||.+|.+. |+ .|++|+.++.+.+++||++||+|+||+|
T Consensus 21 m~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~~~~~~~~~~~~lG~~~DW~r 100 (897)
T PRK12300 21 MRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEYFSEEAKEDMKRIGYSIDWRR 100 (897)
T ss_pred cCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHHhHHHHHHHHHHhCcEEeCCC
Confidence 89999999999999999999987542 43 3567889999999999999999999999
Q ss_pred eeecCChhHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhh
Q 003404 57 EISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLL 136 (823)
Q Consensus 57 ~~~T~~p~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~ 136 (823)
+|.||||+|++++||+|.+|+++|||||+.++|+|||.|+|+|||+|+++|...
T Consensus 101 ~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~-------------------------- 154 (897)
T PRK12300 101 EFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEP-------------------------- 154 (897)
T ss_pred CeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCC--------------------------
Confidence 999999999999999999999999999999999999999999999999865211
Q ss_pred ccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccc---
Q 003404 137 DDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ--- 213 (823)
Q Consensus 137 ~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~--- 213 (823)
+.+.+++|+|+ .+ .+.+++||||||||||||++++|||+++|+......+.
T Consensus 155 --------------------~~~~~~~ikf~-~~-----~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~ 208 (897)
T PRK12300 155 --------------------EIVEYTLIKFE-ES-----EDLILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIV 208 (897)
T ss_pred --------------------CcceEEEEEEe-CC-----CceEEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEE
Confidence 12345688997 21 24789999999999999999999999999765442211
Q ss_pred -hHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcC
Q 003404 214 -SQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD 292 (823)
Q Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~ 292 (823)
....+.+.. ...++ ..+.+.+|..|.|.++.||++++.+||+.++||++++|||+||+|||||++||+++++++
T Consensus 209 a~~~~~~~~~---~~~~~--~~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~ 283 (897)
T PRK12300 209 SKEAAEKLSF---QDRDV--EIIEEIKGSELIGKKVKNPVTGKEVPILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLK 283 (897)
T ss_pred eHHHHHHHhc---CcCCc--eEEEEeehHHhcCCEEECCCCCCeEEEeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhc
Confidence 111111111 00111 123455677799999999999999999999999999999999999999999999999998
Q ss_pred --------CceeeeccCCC-CCCc------------c--------cccccc---ccceEecccCcccccccCCCCHHHHH
Q 003404 293 --------ISIHSVVMPDD-ESSS------------Q--------SEKAYT---GEGLIVNSSNLISGLDINGLSCQEAT 340 (823)
Q Consensus 293 --------l~~~~vv~~~~-~~~~------------~--------~~~~~~---~~g~~~~~~~~~~~~~~~g~~~~~~~ 340 (823)
|+++.+++.++ |.+. . ....|. .+|+|+++. .++.|+.+++|+
T Consensus 284 ~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~-----g~~~G~~v~eA~ 358 (897)
T PRK12300 284 KNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENT-----GEYAGKPVREAR 358 (897)
T ss_pred cccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecc-----cCcCCeEHHHHH
Confidence 77666664321 1110 0 011233 367887652 248999999999
Q ss_pred HHHHHHHHHcCCCceeE--------------------------ee--------------------------------ecC
Q 003404 341 SKVIEWAEKTGNGKKKV--------------------------NY--------------------------------KLR 362 (823)
Q Consensus 341 ~~v~~~l~~~~~~~~~~--------------------------~~--------------------------------~l~ 362 (823)
+.|++.|.+.|.+.... ++ +++
T Consensus 359 ~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~l~ 438 (897)
T PRK12300 359 EKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDWLK 438 (897)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEECHHHHHHHHHHHhhhh
Confidence 99999999988653211 11 378
Q ss_pred ceeeeeccccCCcccE---EEeCCCCceeeCCCCccCCcCCcccc-cCCCCCCCCCCcCCccceeecccCCCCCccccCC
Q 003404 363 DWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDD-FTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETS 438 (823)
Q Consensus 363 DW~ISRQr~WG~PIPi---~~~~~~~~~~~v~~~~lpv~lp~~~~-~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d 438 (823)
||||||||+||||||+ |.|+.+ +++.+++....+.+ +...|....-| ++++.+... ....+
T Consensus 439 DW~ISRqr~WGtpiP~~~~w~~esl------~ds~iY~~~~~i~~~l~~~g~~~~~l--~~~~~D~~~-------~~~~~ 503 (897)
T PRK12300 439 DRACARRRGLGTRLPWDEEWIIESL------SDSTIYMAYYTIAHKIREYGIKPEQL--TPEFFDYVF-------LGKGD 503 (897)
T ss_pred hcceeeccccCCcCCccCCEEeeec------cccchhhhHHHHHHHHHHcCCChHHC--ChhhCceEE-------eCCCc
Confidence 9999999999999996 444321 22222221111110 01011100001 111111111 11225
Q ss_pred CccccccchhhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCcc-ccccccc
Q 003404 439 TMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPF-KCVINQG 517 (823)
Q Consensus 439 t~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf-~~l~~~G 517 (823)
++++|++|.|.+.... .. ++..++|+|+|+|++|+||+++|++|.+|.|..+++. .|| +++++||
T Consensus 504 ~~~~~~~sg~p~~~~~-------~~-~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~------~~~Pk~v~~hG 569 (897)
T PRK12300 504 PEEVSKKTGIPKEILE-------EM-REEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPE------EKWPRGIVVNG 569 (897)
T ss_pred cccCchhcCCCHHHHH-------HH-HHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCC------CccCcEEEEcc
Confidence 6778887776443211 11 2223789999999999999999999988887777653 466 8999999
Q ss_pred eEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHH
Q 003404 518 IILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE 597 (823)
Q Consensus 518 ~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~ 597 (823)
||+.+ |+|||||+||+|+|.+++++
T Consensus 570 ~vl~~-------------------------------------------------------G~KMSKS~GNvVdp~eii~~ 594 (897)
T PRK12300 570 FVLLE-------------------------------------------------------GKKMSKSKGNVIPLRKAIEE 594 (897)
T ss_pred eEEEC-------------------------------------------------------CccccCcCCCCCCHHHHHHH
Confidence 99853 89999999999999999999
Q ss_pred hCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHH
Q 003404 598 YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEE 677 (823)
Q Consensus 598 yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~ 677 (823)
||||++||||++++++.+|.+|+++.+.++.++++|+++++..... .... ......|+++++++++++++++++
T Consensus 595 yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~----~~~~--~~~~~~D~wils~l~~~i~~v~~~ 668 (897)
T PRK12300 595 YGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIE----IGGE--EELRFIDKWLLSRLNRIIKETTEA 668 (897)
T ss_pred cChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhc----CCCc--cccCHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999998999999999999999999999999998743210 0010 012346889999999999999999
Q ss_pred HhcCcHHHHHHHHH-HHHHHHhcccc--------chHHHHHHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCccc
Q 003404 678 IEGTRFNTGISAMM-EFINAAYKWEK--------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDY 748 (823)
Q Consensus 678 ~e~~~f~~ai~~l~-~~~~~~~~~~~--------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e~~ 748 (823)
|++|+|+.|+++++ .+.+.+|.|.. .+.++++.+++||+|||||+||+||+.|+.++||+.+.||++++.+
T Consensus 669 ~e~~~~~~A~~~i~~~l~~~~n~Yi~~~k~~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~~sv~~~~wP~~~~~~ 748 (897)
T PRK12300 669 MESFQTRDAVQEAFYELLNDLRWYLRRVGEANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGEGFVSLEKWPEPDESK 748 (897)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCCeEEeCCCCCCCccc
Confidence 99999999998876 55566664321 3458899999999999999999999999988899999999988765
Q ss_pred cc
Q 003404 749 LK 750 (823)
Q Consensus 749 l~ 750 (823)
.+
T Consensus 749 ~d 750 (897)
T PRK12300 749 ID 750 (897)
T ss_pred CC
Confidence 43
No 24
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.2e-97 Score=907.53 Aligned_cols=601 Identities=23% Similarity=0.366 Sum_probs=447.6
Q ss_pred CCCCcccccccCCccchHHHHHHHHh---------------C---------CCChHHHHHHHHHHHHHHHHhcCcccCCC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET---------------G---------THPKITTLRNINRFRTQLKSLGFSYDWNR 56 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~---------------g---------~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~ 56 (823)
|+||+|+|||||||||||||..|.+. + .+|..|+.++...+++||++||+++||+|
T Consensus 60 m~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r 139 (938)
T TIGR00395 60 MKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRR 139 (938)
T ss_pred hcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCC
Confidence 89999999999999999999988662 1 23567888999999999999999999999
Q ss_pred eeecCChhHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhh
Q 003404 57 EISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLL 136 (823)
Q Consensus 57 ~~~T~~p~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~ 136 (823)
+|.|+||+|.+++||+|.+|+++||||++.++|+|||.|+|+|||+|+++|...
T Consensus 140 ~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~-------------------------- 193 (938)
T TIGR00395 140 SFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGV-------------------------- 193 (938)
T ss_pred CccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCchhHhccCCcc--------------------------
Confidence 999999999999999999999999999999999999999999999999865211
Q ss_pred ccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccc---
Q 003404 137 DDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ--- 213 (823)
Q Consensus 137 ~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~--- 213 (823)
+..++++|+|++.+. +.+++|||||||||||+++++|||+++|+...+..+.
T Consensus 194 --------------------~~~~~~~ikf~~~~~-----~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~ 248 (938)
T TIGR00395 194 --------------------TIVEYILIKFELEDG-----AFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWIT 248 (938)
T ss_pred --------------------ccceEEEEEEEcCCC-----ceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEE
Confidence 122467899998531 3589999999999999999999999999766544321
Q ss_pred -hHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHc-
Q 003404 214 -SQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF- 291 (823)
Q Consensus 214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~- 291 (823)
....+.+... ..+ ...+...+|+.|.|.++.||++++.+||+.++||++++|||+||+|||||++||++++++
T Consensus 249 s~~~~~~~~~q---~~~--~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~ 323 (938)
T TIGR00395 249 SKEAFENLSYQ---KLK--YKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLL 323 (938)
T ss_pred eHHHHHhhhhc---ccc--eeEEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhh
Confidence 1122222211 011 112345677889999999999999999999999999999999999999999999998863
Q ss_pred -------------CCceeeeccCCC-CCCcc---------------------ccccccc---cceEecccCcccccccCC
Q 003404 292 -------------DISIHSVVMPDD-ESSSQ---------------------SEKAYTG---EGLIVNSSNLISGLDING 333 (823)
Q Consensus 292 -------------~l~~~~vv~~~~-~~~~~---------------------~~~~~~~---~g~~~~~~~~~~~~~~~g 333 (823)
+|+++++++.++ |.+.. ....|.+ +|+|.... ..+.|
T Consensus 324 ~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~-----~~~~G 398 (938)
T TIGR00395 324 HDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNI-----PPYKG 398 (938)
T ss_pred hcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCC-----cccCC
Confidence 355566664431 22210 0112333 46664321 25899
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeE--------------------------e-----e-----------------------
Q 003404 334 LSCQEATSKVIEWAEKTGNGKKKV--------------------------N-----Y----------------------- 359 (823)
Q Consensus 334 ~~~~~~~~~v~~~l~~~~~~~~~~--------------------------~-----~----------------------- 359 (823)
+++.+|+++|++.|.+.|.+.... + +
T Consensus 399 ~~v~ear~~i~~~L~~~g~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~ 478 (938)
T TIGR00395 399 MKVSEAKEKVKADLIDAGLADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFE 478 (938)
T ss_pred cCHHHhHHHHHHHHHHCCCceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHH
Confidence 999999999999999988763211 0 1
Q ss_pred ----ecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccc
Q 003404 360 ----KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARR 435 (823)
Q Consensus 360 ----~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~r 435 (823)
+|+||||||||+||||||+ .. ...+.+++++.+.+....+..+.. ++.++. -+.
T Consensus 479 ~~l~~l~DW~ISRqr~WGtpIP~-d~--~~~ieslsdstiY~~~~~i~~~l~------------------~~~~~~-~~l 536 (938)
T TIGR00395 479 GKIDWLKDWACCRRYGLGTRLPW-DE--KWLIESLSDSTIYMAYYTIAHYLN------------------KDYYGN-EQM 536 (938)
T ss_pred HHHhhhhhcccccccccCcccce-ee--cEEeeecchhhhhhhhccHHHHhh------------------ccCCCh-HHC
Confidence 2899999999999999995 21 111112233333222111111100 000110 012
Q ss_pred cCCCccccccchhhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCcc-cccc
Q 003404 436 ETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPF-KCVI 514 (823)
Q Consensus 436 e~dt~d~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf-~~l~ 514 (823)
..+++|.||.++-..+..+.|...-.. .++..++|+|+|+|++|+||+.+|+.|..|.+..+++. .|| ++++
T Consensus 537 ~~ev~D~~~~~~~~~~~t~~~~~~~~~-~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~------~~~Pk~i~ 609 (938)
T TIGR00395 537 TDEFFDYIFLGKGDVKNTNIPLPAIQK-LRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPE------KFWPRGIV 609 (938)
T ss_pred CcccCceEEECCCChhhcCCCHHHHHH-HHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCc------cccCcEEE
Confidence 346677777543111222222210000 01223788999999999999999999877666554432 345 8999
Q ss_pred ccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHH
Q 003404 515 NQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDV 594 (823)
Q Consensus 515 ~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~i 594 (823)
+||||+.+ |+|||||+||+|+|.++
T Consensus 610 ~~G~vl~~-------------------------------------------------------G~KMSKSlGNvI~p~d~ 634 (938)
T TIGR00395 610 VNGYVMLE-------------------------------------------------------GKKMSKSKGNVLTLEQA 634 (938)
T ss_pred EeceEEeC-------------------------------------------------------CccccCcCCCCCCHHHH
Confidence 99999842 89999999999999999
Q ss_pred HHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHH
Q 003404 595 VTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKV 674 (823)
Q Consensus 595 i~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v 674 (823)
+++||||++||||++++++++|.+|+++.+.++.++|.++++++...... .....+ ......|++++++++++++++
T Consensus 635 i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~-~~~~~~--~~~~~~D~wlls~l~~~i~~v 711 (938)
T TIGR00395 635 VEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKE-SNLETG--EETSFIDRWLESRMNAAIKET 711 (938)
T ss_pred HHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhh-cccCCC--ccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999988999999999999999999999999987532110 000000 012346889999999999999
Q ss_pred HHHHhcCcHHHHH-HHHHHHHHHHhcccc--------chHHHHHHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCC
Q 003404 675 TEEIEGTRFNTGI-SAMMEFINAAYKWEK--------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKAN 745 (823)
Q Consensus 675 ~~~~e~~~f~~ai-~~l~~~~~~~~~~~~--------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~ 745 (823)
+++|++|+|+.|+ +.+++|++.++.+.. .+.++++.+++||+|||||+|||||+.|+.++||+.+.||+++
T Consensus 712 ~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~~~sv~~~~wP~~~ 791 (938)
T TIGR00395 712 YEAMENFQTRKAVKYALFDLQADVDWYRRRGGVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGNEGFVSLAKFPEAS 791 (938)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCCCeEEecCCCCCC
Confidence 9999999999999 779999987654321 3558999999999999999999999999988899999999988
Q ss_pred cccc
Q 003404 746 PDYL 749 (823)
Q Consensus 746 e~~l 749 (823)
+.+.
T Consensus 792 ~~~~ 795 (938)
T TIGR00395 792 EPAV 795 (938)
T ss_pred cccC
Confidence 7543
No 25
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.5e-96 Score=897.61 Aligned_cols=607 Identities=19% Similarity=0.252 Sum_probs=431.7
Q ss_pred CCCCcccccccCCccchHHHHHHHHh-------CCCC----------------------------------hH-------
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET-------GTHP----------------------------------KI------- 32 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~-------g~~p----------------------------------~~------- 32 (823)
|+||+|+|||||||||||||.+|.+. |+.| ++
T Consensus 80 m~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~ 159 (1084)
T PLN02959 80 LRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGT 159 (1084)
T ss_pred cCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999998542 4321 01
Q ss_pred --------------------------HHHHHHHHHHHHHHHhcCcccCCCeeecCC--hhHHHHHHHHHHHHHHcCcEEE
Q 003404 33 --------------------------TTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 33 --------------------------~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~--p~y~~~~~~~F~~L~~~gliy~ 84 (823)
|+.-+...++++|++||+++||+|+|.|+| |.|.+.++|+|.+|+++|+||+
T Consensus 160 ~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~ 239 (1084)
T PLN02959 160 QKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK 239 (1084)
T ss_pred chHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEe
Confidence 112222567899999999999999999999 9999999999999999999999
Q ss_pred cceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhcccCCeE-
Q 003404 85 AEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAE- 163 (823)
Q Consensus 85 ~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s~~~~- 163 (823)
+.+||+|||.|+|+||++|+++|.. .+++.|
T Consensus 240 g~rpv~wcp~~~t~ladhe~~~~e~------------------------------------------------~~~~~y~ 271 (1084)
T PLN02959 240 DKRYTIYSPLDGQPCADHDRASGEG------------------------------------------------VGPQEYV 271 (1084)
T ss_pred cCeeeeeCCCCCCCchhhHHhcCCC------------------------------------------------CCcceeE
Confidence 9999999999999999999987631 112222
Q ss_pred -EEEEeecCC-C-----CCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccch-----HHHH--HHHHHHhccCh
Q 003404 164 -MDFRVLDSD-G-----QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS-----QNIE--EYKNLASRKSD 229 (823)
Q Consensus 164 -~~f~~~~~~-~-----~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~ 229 (823)
|+|++.+.- . ...+.++++|||||||||||++++|||+..|+...+..+.. .... .|........+
T Consensus 272 ~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~ 351 (1084)
T PLN02959 272 LIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGK 351 (1084)
T ss_pred EEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCC
Confidence 344432210 0 01246899999999999999999999999997665532211 1111 12211111111
Q ss_pred hhhhhhhhcccceecceEEecCCCCCe-ecEEEeCccccCCCCceEEecCCCChhhHHH----------HHHcCC-----
Q 003404 230 LERTELQKEKTGVFSGCYARNPASGEA-IPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKFDI----- 293 (823)
Q Consensus 230 ~~~~~~~~~~~~~~~g~~~~~P~~~~~-~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~----------~~~~~l----- 293 (823)
...+...+|..|.|..+.||+++.+ +||++++||+++.|||+||+|||||++||.. +++|||
T Consensus 352 --~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~ 429 (1084)
T PLN02959 352 --PTCLVELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWV 429 (1084)
T ss_pred --cEEEEEEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccc
Confidence 1234456778899999999999977 9999999999999999999999999999997 688998
Q ss_pred ---ceeeeccCCCCCCccc-----------------------ccc----ccccceEecccCcccccccCCCCHHHHHHHH
Q 003404 294 ---SIHSVVMPDDESSSQS-----------------------EKA----YTGEGLIVNSSNLISGLDINGLSCQEATSKV 343 (823)
Q Consensus 294 ---~~~~vv~~~~~~~~~~-----------------------~~~----~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v 343 (823)
+++++|+.. |..+.. ... |. +|+|. ...+.|+.+.+|+++|
T Consensus 430 ~~~~~i~iid~~-g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~-~g~m~-------~g~~~G~~v~eAr~~I 500 (1084)
T PLN02959 430 LPFEVVPIINIP-EFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFT-DGTML-------VGEYAGRKVQEAKPLI 500 (1084)
T ss_pred cccCCcCccccC-CCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhccc-ccccc-------CcCcCCcCHHHHHHHH
Confidence 446777654 221000 001 11 13332 1348899999999999
Q ss_pred HHHHHHcCCCcee------------------------Ee--------------------------------eecCceeee
Q 003404 344 IEWAEKTGNGKKK------------------------VN--------------------------------YKLRDWLFA 367 (823)
Q Consensus 344 ~~~l~~~~~~~~~------------------------~~--------------------------------~~l~DW~IS 367 (823)
++.|.+.|..... ++ .+++|||||
T Consensus 501 i~~L~~~G~l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciS 580 (1084)
T PLN02959 501 KKKLIEAGQAILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACS 580 (1084)
T ss_pred HHHHHhCCCceeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeec
Confidence 9999988853210 00 057999999
Q ss_pred eccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccch
Q 003404 368 RQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC 447 (823)
Q Consensus 368 RQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSs 447 (823)
|||+|||||| |+|.-. +...+++.+++....+.++...+.. .....| ... +-+.+.|++|+||+|+
T Consensus 581 RQr~wGtpIP-Wd~~~~--ieslsdstiy~a~yti~~~~~~~~~----~g~~~~--~i~-----~~~~~~dV~D~wF~Sg 646 (1084)
T PLN02959 581 RSFGLGTRIP-WDEQFL--IESLSDSTIYMAYYTVAHLLQGGDM----YGKDKS--SIK-----PEQMTDEVWDFVFCGG 646 (1084)
T ss_pred ccccCCCcCC-ccccee--eccCCCCceeechhhHHHHHhhhhc----cCCccc--cCC-----hhhcCccceeEeecCC
Confidence 9999999999 543100 0011112222111111111100000 000011 000 0122679999999885
Q ss_pred -hhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCcc-ccccccceEecccee
Q 003404 448 -WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPF-KCVINQGIILGEMQY 525 (823)
Q Consensus 448 -w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf-~~l~~~G~vl~~~~~ 525 (823)
|.+.. ++|....+... ...++|+|+|+|++|+||+.+|+.|++|.|..+++ ..|| +.+++||||+.
T Consensus 647 ~~p~~t-~~p~~~l~~~r-~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~------~~P~p~~v~v~G~V~~---- 714 (1084)
T PLN02959 647 PLPKSS-DIPAELLEKMK-QEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWA------EEHWPRGFRCNGHLML---- 714 (1084)
T ss_pred Cccccc-CCCHHHHhhhh-HHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcC------CCCCCceEEEccEEec----
Confidence 66654 55543211111 22378999999999999999999999988887665 5799 56999999973
Q ss_pred eEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchhee
Q 003404 526 MVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRL 605 (823)
Q Consensus 526 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl 605 (823)
+|+|||||+||+|+|.++|++||||++||
T Consensus 715 ---------------------------------------------------~G~KMSKSkGNvI~p~diI~kyGADalRl 743 (1084)
T PLN02959 715 ---------------------------------------------------NSEKMSKSTGNFLTLRQAIEEFSADATRF 743 (1084)
T ss_pred ---------------------------------------------------CCcCccccCCCcCCHHHHHHHhCchHHHH
Confidence 38999999999999999999999999999
Q ss_pred eeeecCCccCCccccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHH
Q 003404 606 YEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNT 685 (823)
Q Consensus 606 ~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ 685 (823)
|++++++..+|.+|+++....+.+.++++++++.........+... ......|+|++++++.++++++++|++|+|+.
T Consensus 744 ~la~~~~~~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~ 821 (1084)
T PLN02959 744 ALADAGDGVDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTG--PPSTYADRVFENEINIAIAETEKNYEAMMFRE 821 (1084)
T ss_pred HHhhcCCccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 9998888899999998888777777777766654321100111111 11245689999999999999999999999999
Q ss_pred HHHHH-HHHHHHHhc---cc-------cchHHHHHHHHHHhCccchhhHHHHHHHc-CCCCCccccCCCCCC
Q 003404 686 GISAM-MEFINAAYK---WE-------KHPRKIIEPFILLLAPYAPHMSEELWFRL-GHSNSLAYESFPKAN 745 (823)
Q Consensus 686 ai~~l-~~~~~~~~~---~~-------~~~~~~l~~l~~lLaPi~P~~aEelw~~L-~~~~sv~~~~WP~~~ 745 (823)
|++.. ++|.+.... |. ..+..+|+.+++||||||||+|||||+.| +..+||+.+.||.++
T Consensus 822 A~~~~~Yel~~~k~~yr~~~~~~~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~sI~~~~wP~~~ 893 (1084)
T PLN02959 822 ALKSGFYDLQAARDEYRLSCGSGGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAG 893 (1084)
T ss_pred HHHHHHHHHHHhHHHHhhccccchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCeEEecCCCCCC
Confidence 99874 434433221 21 14567899999999999999999999999 667799999999875
No 26
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=5e-97 Score=868.06 Aligned_cols=470 Identities=32% Similarity=0.563 Sum_probs=344.5
Q ss_pred CCCCcccccccCCccchHHHHHHHH-hCCC----------------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-~g~~----------------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+++|||||||||||.+|.+ .|.. |++|+.++++.|++||++||+++||+|+|.|+||
T Consensus 58 m~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~ 137 (601)
T PF00133_consen 58 MQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDP 137 (601)
T ss_dssp CTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSH
T ss_pred hCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCc
Confidence 8999999999999999999999876 3542 4578999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|+++++|+|.+|+++|||||+.+||+|||.|+|+|||+||+++..
T Consensus 138 ~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev~~~~~---------------------------------- 183 (601)
T PF00133_consen 138 EYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEVEYKEV---------------------------------- 183 (601)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGEEEEEE----------------------------------
T ss_pred cHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhcccccc----------------------------------
Confidence 9999999999999999999999999999999999999999975410
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNL 223 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~ 223 (823)
.+++++|+|++.+.+ +.+|+||||||||||||+||+|||+..|+ ...+.-...++.+..
T Consensus 184 --------------~~~~~~v~f~~~~~~----~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~~~~i~~~~~~~~ 242 (601)
T PF00133_consen 184 --------------KSPSIYVKFPLKDGE----EVYLVIWTTRPETLPGNTAIAVNPDFDYV---INGERYIVAKDLVEK 242 (601)
T ss_dssp --------------EEEEEEEEEEESSSS----EEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETTEEEEEEHHHHHH
T ss_pred --------------cCceEEEEEEecCcc----ceEEEEEechhhHHhCCeeEEECCCccce---eCCeeehHHHHHHHH
Confidence 356789999996432 36999999999999999999999999997 221111111223332
Q ss_pred HhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCC
Q 003404 224 ASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDD 303 (823)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~ 303 (823)
........ +...++..|.|++|.||++++.+||+.++||+++.|||+||+|||||++||+++++|+|+++++|+++
T Consensus 243 ~~~~~~~~---~~~~~g~~L~g~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~- 318 (601)
T PF00133_consen 243 LSKQEKTK---LEDFRGKELVGLKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDED- 318 (601)
T ss_dssp HHTTTSSS---EEEEECHHHTTSEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCT-
T ss_pred HHhhhhhc---ccccCcceecCcEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCC-
Confidence 22221111 44667888999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeE--------------------------
Q 003404 304 ESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV-------------------------- 357 (823)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~-------------------------- 357 (823)
|++++..+. +.|+.+.+|++.|++.|.+.|.....-
T Consensus 319 G~~~~~~~~------------------~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi 380 (601)
T PF00133_consen 319 GRFTEEAGK------------------FKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFI 380 (601)
T ss_dssp STBBSCCST------------------TTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEE
T ss_pred ceEeecccc------------------cCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEE
Confidence 555444433 566777777777777777766532100
Q ss_pred ------------------------------eeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCC
Q 003404 358 ------------------------------NYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTP 407 (823)
Q Consensus 358 ------------------------------~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~ 407 (823)
..+++||||||||+||+|||+|+|++|+. +.++++.+++... ....
T Consensus 381 ~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~-~~~~~~~~~~~~~---~~~~ 456 (601)
T PF00133_consen 381 KYDDWKKKALEALEKIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGE-VLVIESTIELIAD---RVEK 456 (601)
T ss_dssp EHHHHHHHHHHHHHTSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEE-EECCGGHHHHHHH---HSTH
T ss_pred ecHHhHHHHHhhcccceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCcc-ccccccccccccc---cccc
Confidence 01478999999999999999999987664 4444333322210 0111
Q ss_pred CCCCCCCCcCCccceeecccCCCCCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHH
Q 003404 408 TGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVL 486 (823)
Q Consensus 408 ~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~ 486 (823)
.|.... +. ..+ ...++.|+..++|++|||||||||+ |++....+|++.+.. .++|+|+|+|++|+||+++
T Consensus 457 ~~~~~~-~~--~~~-~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~-----~~~~~P~D~~~~G~D~~~~ 527 (601)
T PF00133_consen 457 EGIDAW-LH--KPA-EDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREE-----FEYWYPVDLYIEGKDQIRG 527 (601)
T ss_dssp HHHSCT-SS--HHH-HHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHH-----HHHHSSBSEEEEEGGGTTT
T ss_pred cccccc-cc--ccc-cccccccccceEEeeeeccccccccCCcccccccccccchh-----ccccCCcccccCCccchhh
Confidence 111100 00 001 1234789999999999999999997 455566778763322 3779999999999999977
Q ss_pred HHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceee
Q 003404 487 HLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVM 566 (823)
Q Consensus 487 Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (823)
|+.++.+.+..|. ..+||++|++||||++.
T Consensus 528 W~~~~l~~~~~l~------~~~pfk~v~~hG~vld~-------------------------------------------- 557 (601)
T PF00133_consen 528 WFQSSLFLSVALF------GKEPFKKVITHGFVLDE-------------------------------------------- 557 (601)
T ss_dssp HHHHHHHHHHHHS------SSTSBSEEEEE--EEET--------------------------------------------
T ss_pred HHHHhHhhccccc------cCCchheeeeccccccc--------------------------------------------
Confidence 7666655555443 46799999999999864
Q ss_pred ccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCcccc
Q 003404 567 KDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 620 (823)
Q Consensus 567 ~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s 620 (823)
+|+|||||+||+|+|.++|++||||++|||+++++.+.+|++||
T Consensus 558 ----------~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 558 ----------DGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp ----------TSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred ----------ceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 38999999999999999999999999999999889999998886
No 27
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-89 Score=769.39 Aligned_cols=560 Identities=28% Similarity=0.487 Sum_probs=440.1
Q ss_pred CCCCcccccccCCccchHHHHHHHH-----hCCCC------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIE-----TGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~-----~g~~p------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||.|+|.||+|+.|+.++.-++| .|..- -+|-.+.-....+|+++||.|+||+|++.||||
T Consensus 110 m~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~ 189 (995)
T KOG0432|consen 110 MHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDP 189 (995)
T ss_pred hcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCH
Confidence 8999999999999999999655443 12221 135566677889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
...+.|...|.+||++|+|||+.+.|||||..+|++||.||++- ...+.. ++.++.|..+.+.+.
T Consensus 190 ~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~--ei~~~t---------~l~vpGyd~~VeFG~---- 254 (995)
T KOG0432|consen 190 KLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESV--EIPGRT---------LLSVPGYDTKVEFGV---- 254 (995)
T ss_pred HHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecce--ecCCCc---------eEecCCCCcceeeee----
Confidence 99999999999999999999999999999999999999999842 111111 122334443332210
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNL 223 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~ 223 (823)
=+.++|++.++ +..|+|.||||+||+|++|+||||+++. |.
T Consensus 255 -----------------L~~faY~v~gs-----~~~i~VaTTRpET~lGDvAvAVhP~D~R---------------Yk-- 295 (995)
T KOG0432|consen 255 -----------------LYSFAYPVEGS-----DEEIVVATTRPETILGDVAVAVHPDDDR---------------YK-- 295 (995)
T ss_pred -----------------eeEEEEeccCC-----CCeEEEecCCccccccceeEEeCCCCcc---------------cc--
Confidence 02456667543 3589999999999999999999999874 21
Q ss_pred HhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCC
Q 003404 224 ASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDD 303 (823)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~ 303 (823)
.+.|.++.||++++.+||+.+.+|++++|||+|.++||||+.||+++++|||+.++|++++
T Consensus 296 ------------------~lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~d- 356 (995)
T KOG0432|consen 296 ------------------HLHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDD- 356 (995)
T ss_pred ------------------cccCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCC-
Confidence 1468899999999999999999999999999999999999999999999999999999886
Q ss_pred CCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCce----------------------------
Q 003404 304 ESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK---------------------------- 355 (823)
Q Consensus 304 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~---------------------------- 355 (823)
|.|++.. .+|.||...+|+++|++.|++.|+-+.
T Consensus 357 -------------G~l~~~~-----gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v 418 (995)
T KOG0432|consen 357 -------------GLLNNVC-----GEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFV 418 (995)
T ss_pred -------------Cceeccc-----hhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchhee
Confidence 3343332 358899999999999999998875211
Q ss_pred ------------------eE------------eeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCccccc
Q 003404 356 ------------------KV------------NYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDF 405 (823)
Q Consensus 356 ------------------~~------------~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~ 405 (823)
.+ ..+.+|||||||.+||+.||+++...... -++
T Consensus 419 ~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~---~~e------------- 482 (995)
T KOG0432|consen 419 SCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG---RAE------------- 482 (995)
T ss_pred ehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC---CCc-------------
Confidence 00 01569999999999999999988743211 000
Q ss_pred CCCCCCCCCCcCCccceeec---------ccCCC----CCccccCCCccccccch-hhhhhhcCCCCChhhhhhhhcccc
Q 003404 406 TPTGTGEPPLSKAVSWVQTT---------EHSSG----KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYW 471 (823)
Q Consensus 406 ~~~g~~~~~l~~~~~w~~~~---------~~~~g----~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~~~~~~~~~~w 471 (823)
-+.|+-.. ..++| -.++|++|||||||+|+ |+|..++||+.++.+ +.+
T Consensus 483 ------------e~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~------~~f 544 (995)
T KOG0432|consen 483 ------------EDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDF------KNF 544 (995)
T ss_pred ------------cceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccH------Hhc
Confidence 02232111 11222 34799999999999886 899999999976654 445
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHHHHhcC-ccCCCccccccccceEeccceeeEEecCCCccccCCCCCcccccccc
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQE 550 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~-~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 550 (823)
+|.++.-.|.|+. .||.+.|.++|+ +.+..||++|+.||||-+ ++
T Consensus 545 yP~sllETG~DIL-------fFWVaRMvmLg~kLtG~lPF~~V~LH~mVRD---------a~------------------ 590 (995)
T KOG0432|consen 545 YPLSLLETGHDIL-------FFWVARMVMLGLKLTGELPFKEVLLHGLVRD---------AH------------------ 590 (995)
T ss_pred CCchhhhcCchHH-------HHHHHHHHHhhhhhcCCCCchheeechhhcc---------cc------------------
Confidence 8999999999997 899998888886 467899999999999964 33
Q ss_pred ccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHH------------------------------Hh--
Q 003404 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT------------------------------EY-- 598 (823)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~------------------------------~y-- 598 (823)
|+|||||+||||||.|+|+ .|
T Consensus 591 ---------------------------GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPn 643 (995)
T KOG0432|consen 591 ---------------------------GRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPN 643 (995)
T ss_pred ---------------------------ccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCC
Confidence 8999999999999999997 45
Q ss_pred -----CcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH---HcCCCCCCCCCCCcc--CC--CCcchHHHHHH
Q 003404 599 -----GADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGGTV--VN--DEEPTLEQLCT 666 (823)
Q Consensus 599 -----GaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~---~~~~~~~~~~~~~~~--~~--~~~~d~~~~~~ 666 (823)
|.|||||.|++.+..+.|++++...+.++++|+|++||.. +... ..+|.+... +. ....|.|++++
T Consensus 644 GIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~l--g~~~~p~~~~~~~~~~~~~d~WIlsr 721 (995)
T KOG0432|consen 644 GIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRL--GENFVPSPTEDLSGNESLVDEWILSR 721 (995)
T ss_pred CCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhc--ccCCCCCcccccCCCcchhHHHHHHH
Confidence 9999999999889999999999999999999999999754 3321 112222111 11 11268999999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHhc----------cc----------cchHHHHHHHHHHhCccchhhHHH
Q 003404 667 LHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYK----------WE----------KHPRKIIEPFILLLAPYAPHMSEE 725 (823)
Q Consensus 667 l~~~~~~v~~~~e~~~f~~ai~~l~~~~-~~~~~----------~~----------~~~~~~l~~l~~lLaPi~P~~aEe 725 (823)
|+.+++.+.+.|+.|+|..|.+++..|. ..++. |. .++..++...++||+|||||+|||
T Consensus 722 L~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEe 801 (995)
T KOG0432|consen 722 LAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEE 801 (995)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHH
Confidence 9999999999999999999999999988 44443 21 123468888999999999999999
Q ss_pred HHHHcCC-C----CCccccCCCCCCccc
Q 003404 726 LWFRLGH-S----NSLAYESFPKANPDY 748 (823)
Q Consensus 726 lw~~L~~-~----~sv~~~~WP~~~e~~ 748 (823)
+||+|+. + .|+..++||...+.+
T Consensus 802 l~qrlP~r~~~~~~si~va~yP~~~~~~ 829 (995)
T KOG0432|consen 802 LWQRLPRRKGSKPASISVSPYPSSNELW 829 (995)
T ss_pred HHHhcccCCCCCCCceEecCCCchhccc
Confidence 9999953 2 378889999544433
No 28
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-87 Score=724.00 Aligned_cols=623 Identities=22% Similarity=0.363 Sum_probs=465.2
Q ss_pred CCCCcccccccCCccchHHHHHHH-HhCCC----------------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAI-ETGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~-~~g~~----------------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||.|-..+||||||||+|.... ++||+ |+.++-++...+++...|||-|.|+++.|.|++|
T Consensus 73 ~~G~hVeRRFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp 152 (1070)
T KOG0434|consen 73 QTGHHVERRFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYP 152 (1070)
T ss_pred ccccceeeecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecH
Confidence 789999999999999999998754 35654 4556677778889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
.|++.++|+|.+|++|||||||.+...||..|.|.|||-|..+++...
T Consensus 153 ~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV-------------------------------- 200 (1070)
T KOG0434|consen 153 SFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDV-------------------------------- 200 (1070)
T ss_pred HHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhcccCcccC--------------------------------
Confidence 999999999999999999999999999999999999999987554332
Q ss_pred ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHH--HHHH
Q 003404 144 WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI--EEYK 221 (823)
Q Consensus 144 wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~--~~~~ 221 (823)
.-+++.|.|++.+.. +..+++|||||||||+|.++||||+..|++...++.++..+ +.-+
T Consensus 201 --------------~DPav~v~F~li~~~----~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl 262 (1070)
T KOG0434|consen 201 --------------PDPAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRL 262 (1070)
T ss_pred --------------CCCeEEEEeeccCCc----ceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHH
Confidence 236789999997542 68899999999999999999999999998766654332211 1111
Q ss_pred HH-HhccChhhhhhhhhcccceecceEEecCC-------CCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCC
Q 003404 222 NL-ASRKSDLERTELQKEKTGVFSGCYARNPA-------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 293 (823)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~P~-------~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l 293 (823)
.. ......-.-++++++.|..|.|++|..++ ......|+.++||+.+.|||+||+||+.|++||++|..+|+
T Consensus 263 ~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~gi 342 (1070)
T KOG0434|consen 263 GELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGI 342 (1070)
T ss_pred HHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCc
Confidence 11 11111112245677889999999987665 24679999999999999999999999999999999999987
Q ss_pred -----ceeeeccCCCCCCcccccccccc----------------ceEecccCccccccc---C--CC------CHHHHHH
Q 003404 294 -----SIHSVVMPDDESSSQSEKAYTGE----------------GLIVNSSNLISGLDI---N--GL------SCQEATS 341 (823)
Q Consensus 294 -----~~~~vv~~~~~~~~~~~~~~~~~----------------g~~~~~~~~~~~~~~---~--g~------~~~~~~~ 341 (823)
-..|+||+. |+++.....|+|. |.+.....+.+.-.| + .| ++.-..+
T Consensus 343 I~~d~~~~cpVDe~-G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk 421 (1070)
T KOG0434|consen 343 IRKDSLPPCPVDES-GLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVK 421 (1070)
T ss_pred ccCCCCCCCccccC-CccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHH
Confidence 345677776 7888777777763 333221111100000 0 00 0111122
Q ss_pred HHHHHHHHcCC----------CceeEee--ecCceeeeeccccCCcccEEEeCCCCceeeCCC-CccCCcCCcccccCCC
Q 003404 342 KVIEWAEKTGN----------GKKKVNY--KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE-AELPLTLPELDDFTPT 408 (823)
Q Consensus 342 ~v~~~l~~~~~----------~~~~~~~--~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~-~~lpv~lp~~~~~~~~ 408 (823)
.++..|..++. -++..+| +.|||.|||.||||||||+|..++-.++|++.. .+| +.+ .
T Consensus 422 ~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eL-------EeL--S 492 (1070)
T KOG0434|consen 422 NIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKEL-------EEL--S 492 (1070)
T ss_pred HHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHH-------HHh--c
Confidence 22222222211 0111111 569999999999999999999988777787753 222 111 2
Q ss_pred CCCCCCCcCCcccee-eccc-CCC-CCccccCCCccccccc-hhhhhhhcCCCCChhhhhhhhccccCCceeeecChhhH
Q 003404 409 GTGEPPLSKAVSWVQ-TTEH-SSG-KPARRETSTMPQWAGS-CWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHA 484 (823)
Q Consensus 409 g~~~~~l~~~~~w~~-~~~~-~~g-~~~~re~dt~d~WfdS-sw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~ 484 (823)
|..-..| |.+.++ .+.| +|| +.++|..+++|.||.| |++|+.-.+|..+++.|.. -+|+|+.-+|.||.
T Consensus 493 G~kItDl--HRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~-----~fPadFIaEGlDQT 565 (1070)
T KOG0434|consen 493 GVKITDL--HRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEE-----NFPADFIAEGLDQT 565 (1070)
T ss_pred CCcchhh--hhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhh-----cCchHhhhhccccc
Confidence 2211222 222222 2223 444 5799999999999988 6999999999988777753 37999999999997
Q ss_pred HHHHHHHHHHHHHHHHhc-CccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCc
Q 003404 485 VLHLLYARFWHKVLYDIG-VVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDF 563 (823)
Q Consensus 485 ~~Hlly~rfw~~~L~~~~-~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (823)
|+|+..|.-++ ++..+.||++|++.|+|+.+
T Consensus 566 -------RGWFYTL~VlsT~LF~kppfkNvIvnGlVLAe----------------------------------------- 597 (1070)
T KOG0434|consen 566 -------RGWFYTLLVLSTALFGKPPFKNVIVNGLVLAE----------------------------------------- 597 (1070)
T ss_pred -------cchhhHHHHHHHHHcCCCcchheeEeeeEEec-----------------------------------------
Confidence 99998887766 45778999999999999976
Q ss_pred eeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCc-cCCccccccchHHHHHHH----HHHHHHH
Q 003404 564 FVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSGIEGVHRFL----GRMWRLI 638 (823)
Q Consensus 564 ~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~-~~d~~~s~~~i~~~~~~l----~r~~~~~ 638 (823)
+|+|||||+.|..+|..++++||||+||+||+.+.-. .+.+.|.++++.++.+-+ -|.++|+
T Consensus 598 -------------DG~KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~ 664 (1070)
T KOG0434|consen 598 -------------DGKKMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFL 664 (1070)
T ss_pred -------------ccHHHhhhhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHH
Confidence 3899999999999999999999999999999954332 577889999988765422 1344555
Q ss_pred HcCCC-----CCCCCC-CCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcccc----------
Q 003404 639 VGSSL-----PDGTFK-GGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------- 702 (823)
Q Consensus 639 ~~~~~-----~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~---------- 702 (823)
..+.. ....|. +..+...+..|+|+++..+.++.-+++.|+.|++.+++-.+..|+..+.+|+.
T Consensus 665 ~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe 744 (1070)
T KOG0434|consen 665 VQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGE 744 (1070)
T ss_pred HHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhhcCC
Confidence 33211 111221 12233455679999999999999999999999999999999999999988752
Q ss_pred -----------chHHHHHHHHHHhCccchhhHHHHHHHcCC----------CCCccccCCCCCCcccccc
Q 003404 703 -----------HPRKIIEPFILLLAPYAPHMSEELWFRLGH----------SNSLAYESFPKANPDYLKD 751 (823)
Q Consensus 703 -----------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~----------~~sv~~~~WP~~~e~~l~~ 751 (823)
.+-++|..++++|+||.||++|.+||.|.. ..|||...+|.+.+++.++
T Consensus 745 ~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de 814 (1070)
T KOG0434|consen 745 NGEHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDE 814 (1070)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccc
Confidence 123678889999999999999999999842 3589999999998887664
No 29
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-67 Score=623.11 Aligned_cols=407 Identities=26% Similarity=0.449 Sum_probs=331.4
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|+|++|+|+||+|||.+|.+.|++|+++++++.+.|+++|++|||++| .+++|+++.|.+.+|++|.+|+++|
T Consensus 39 ~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG 116 (648)
T PRK12267 39 LQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQG 116 (648)
T ss_pred hcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999999999999999999988 7999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCcccccc-CccccCCCCeEEeccchhhhhHhhhHHHhhccCCCC-C--ChHHHHHHHHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-D--WPESVKEMQRNWI 156 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~-g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l-~--wp~~v~~~q~~wi 156 (823)
+||++..+++|||.|+++|++.|+++ |+|++||.+++.+..+||||++++|+++|++.+++- + ||+.
T Consensus 117 ~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~--------- 187 (648)
T PRK12267 117 DIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPES--------- 187 (648)
T ss_pred CEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHH---------
Confidence 99999999999999999999999887 899999999999999999999999999997754321 0 1111
Q ss_pred cccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhh
Q 003404 157 GRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 236 (823)
Q Consensus 157 g~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (823)
T Consensus 188 -------------------------------------------------------------------------------- 187 (648)
T PRK12267 188 -------------------------------------------------------------------------------- 187 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCcccccccccc
Q 003404 237 KEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGE 316 (823)
Q Consensus 237 ~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~ 316 (823)
T Consensus 188 -------------------------------------------------------------------------------- 187 (648)
T PRK12267 188 -------------------------------------------------------------------------------- 187 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEecccCcccccccCCCCHHHHHHHHH-HHHHHcCCCceeEeeecCceeeeeccc-cCCcccEEEeCCCCceeeCCCCc
Q 003404 317 GLIVNSSNLISGLDINGLSCQEATSKVI-EWAEKTGNGKKKVNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAE 394 (823)
Q Consensus 317 g~~~~~~~~~~~~~~~g~~~~~~~~~v~-~~l~~~~~~~~~~~~~l~DW~ISRQr~-WG~PIPi~~~~~~~~~~~v~~~~ 394 (823)
.++.+. +||.+ .|+||||||||. ||+|||. +
T Consensus 188 ----------------------~~~~~~~~~l~~----------~l~D~~ISR~~~~WGipvP~----~----------- 220 (648)
T PRK12267 188 ----------------------RKNEMINNFIKP----------GLEDLSISRTSFDWGIPVPF----D----------- 220 (648)
T ss_pred ----------------------HHHHHHHHHhhC----------CCCCcccCCCCCCcceECCC----C-----------
Confidence 233444 55543 589999999985 9999994 1
Q ss_pred cCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhh-cCCCCChhhhhhhhccccCC
Q 003404 395 LPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKERYWSP 473 (823)
Q Consensus 395 lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~-~~p~n~~~~~~~~~~~~w~p 473 (823)
+.+|+||||||+..|+.. .+|..... +..++| |
T Consensus 221 -----------------------------------------~~~v~yVWfDA~~~y~s~~~~~~~~~~----~~~~~w-p 254 (648)
T PRK12267 221 -----------------------------------------PKHVVYVWIDALLNYITALGYGSDDDE----LFKKFW-P 254 (648)
T ss_pred -----------------------------------------CCCEEEEcccchHHHHHHcCCCCCCch----HHHhhc-c
Confidence 115899999999777653 45432211 122444 9
Q ss_pred ceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccc
Q 003404 474 VDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIP 553 (823)
Q Consensus 474 ~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 553 (823)
.|+|+.|+|+++||++ ||+.+|+..++ .|++++++||+++.+
T Consensus 255 ~~~~~~GkDii~fH~i---~wpa~l~~~~~----~~p~~v~~hg~l~~e------------------------------- 296 (648)
T PRK12267 255 ADVHLVGKDILRFHAI---YWPIMLMALGL----PLPKKVFAHGWWLMK------------------------------- 296 (648)
T ss_pred cceEEEeeeecchhHH---HHHHHHHhCCC----CCCcEEEecceEEEC-------------------------------
Confidence 9999999999999976 59999888774 588999999999843
Q ss_pred hhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHH--HH
Q 003404 554 EEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR--FL 631 (823)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~--~l 631 (823)
|+|||||+||+|+|.+++++||+|++||||++.++..+|.+|+++.+....| ++
T Consensus 297 ------------------------g~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~ 352 (648)
T PRK12267 297 ------------------------DGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLA 352 (648)
T ss_pred ------------------------CceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999989999999999988765432 23
Q ss_pred HHHHHHHHcCCCCCCCCCCCccC---CCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc-------cc
Q 003404 632 GRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK-------WE 701 (823)
Q Consensus 632 ~r~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~-------~~ 701 (823)
++++|++.+......++.++.++ .....|.+++++++++++++.++|++|+|+.|++++++|++..|. |.
T Consensus 353 ~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 353 NDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 33333321100000011122222 123458899999999999999999999999999999999987775 42
Q ss_pred c---------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 702 K---------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 702 ~---------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
. ...++++.+++||+|||||+||+||++||.+
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~ 479 (648)
T PRK12267 433 LAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLE 479 (648)
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCC
Confidence 1 1236788889999999999999999999864
No 30
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.5e-67 Score=582.58 Aligned_cols=327 Identities=28% Similarity=0.496 Sum_probs=263.9
Q ss_pred CCCCcccccccCCccchHHHHHHHHh---------CCCC-------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET---------GTHP-------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 64 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~---------g~~p-------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~ 64 (823)
|+|++|+|++|||+||||||++|.+. +++| ++++.++++.|+++|++||+++||+++++|++|+
T Consensus 36 ~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~ 115 (382)
T cd00817 36 MKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPG 115 (382)
T ss_pred hcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHH
Confidence 79999999999999999999999764 3343 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCC--C
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--L 142 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~--l 142 (823)
|.+.+|++|.+|+++|+||++.++|+|||.|+|+||++|| ||+||.+++.+..+||||++++|+++|++.+++ +
T Consensus 116 ~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~ 191 (382)
T cd00817 116 LSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDI 191 (382)
T ss_pred HHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999876543 1
Q ss_pred C-ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHH
Q 003404 143 D-WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYK 221 (823)
Q Consensus 143 ~-wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~ 221 (823)
. ||+..
T Consensus 192 ~~~P~~~------------------------------------------------------------------------- 198 (382)
T cd00817 192 KFVPERM------------------------------------------------------------------------- 198 (382)
T ss_pred EEEChHH-------------------------------------------------------------------------
Confidence 1 22222
Q ss_pred HHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccC
Q 003404 222 NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMP 301 (823)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~ 301 (823)
T Consensus 199 -------------------------------------------------------------------------------- 198 (382)
T cd00817 199 -------------------------------------------------------------------------------- 198 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEe
Q 003404 302 DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFL 381 (823)
Q Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~ 381 (823)
++.+.+||. +|+||||||||+||+|||+|+|
T Consensus 199 --------------------------------------~~~~~~~l~-----------~l~Dw~ISR~~~WGipvP~~~~ 229 (382)
T cd00817 199 --------------------------------------EKRYENWLE-----------NIRDWCISRQLWWGHRIPAWYC 229 (382)
T ss_pred --------------------------------------HHHHHHHHh-----------hCccceeeeccccCCccceEEe
Confidence 334445554 3899999999999999999999
Q ss_pred CCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchh-hhhhhcCCCCCh
Q 003404 382 DGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW-YYLRFMDPKNSK 460 (823)
Q Consensus 382 ~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw-~yl~~~~p~n~~ 460 (823)
.+|+..+..+++++++... . ....|++++..++|+++||||||||+. |+....+|.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~------------------~--~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~ 289 (382)
T cd00817 230 KDGGHWVVAREEDEAIDKA------------------A--PEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETK 289 (382)
T ss_pred CCCCcEEecchhHHHHHHh------------------c--cccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcch
Confidence 8888765444333322100 0 112244456679999999999999985 555556665432
Q ss_pred hhhhhhhccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCC
Q 003404 461 ELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADS 540 (823)
Q Consensus 461 ~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~ 540 (823)
. .++|+|+|+|++|+|++.+|..+ .+..+..+....||++++.||||++.
T Consensus 290 ~------~~~~~p~d~~~~G~D~~~~h~~~------~l~~~~~~~g~~p~~~v~~hg~v~~~------------------ 339 (382)
T cd00817 290 D------LKKFYPTSLLVTGHDIIFFWVAR------MIMRGLKLTGKLPFKEVYLHGLVRDE------------------ 339 (382)
T ss_pred h------HhhcCCCCeeeeecCcCchHHHH------HHHHHHHhhCCCchHHeEeeeeEECC------------------
Confidence 2 25677999999999998555443 11122222345789999999999843
Q ss_pred CCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccc
Q 003404 541 TDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTW 619 (823)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~ 619 (823)
+|+|||||+||+|+|.+++++||+|++|||+++.++..+|.+|
T Consensus 340 ------------------------------------~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 340 ------------------------------------DGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred ------------------------------------CCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 3899999999999999999999999999999998988888765
No 31
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-65 Score=600.70 Aligned_cols=420 Identities=22% Similarity=0.372 Sum_probs=332.4
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|+|++|||+||+|||.+|.+.|++|++++.++.+.|+++|++||+++| .+++|++|+|.+.+|++|.+|+++|
T Consensus 39 ~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G 116 (556)
T PRK12268 39 LKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENG 116 (556)
T ss_pred hcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999999999999999999877 6899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCcccccc-----------------------------CccccCCCCeEEeccchhhhhHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVD-----------------------------GVSERGGHPVIRKPMRQWMLKITEY 131 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~-----------------------------g~~~~~~~~v~~~~~~qw~~~it~y 131 (823)
+||++..+|+|||.|+|+|++++|.. +.|++||.+++.+..+||||++++|
T Consensus 117 ~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~ 196 (556)
T PRK12268 117 YIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAF 196 (556)
T ss_pred CeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceEEEEhHHH
Confidence 99999999999999999999999852 2567777899999999999999999
Q ss_pred HHHhhccCCCC-CChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhcc
Q 003404 132 ADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVS 210 (823)
Q Consensus 132 ~~~l~~~l~~l-~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~ 210 (823)
+++|++.++.. -||+..+..
T Consensus 197 ~~~l~~~~~~~~~~p~~~~~~----------------------------------------------------------- 217 (556)
T PRK12268 197 AERLRAWIESSGDWPPNVLNF----------------------------------------------------------- 217 (556)
T ss_pred HHHHHHHHhhccCCCHHHHHH-----------------------------------------------------------
Confidence 99998766533 255444332
Q ss_pred ccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHH
Q 003404 211 TTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK 290 (823)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~ 290 (823)
T Consensus 218 -------------------------------------------------------------------------------- 217 (556)
T PRK12268 218 -------------------------------------------------------------------------------- 217 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeecc
Q 003404 291 FDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR 370 (823)
Q Consensus 291 ~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr 370 (823)
+.+|+.+ +++||||||||
T Consensus 218 ----------------------------------------------------~~~~l~~----------~l~Dw~ISR~~ 235 (556)
T PRK12268 218 ----------------------------------------------------TLNWLKE----------GLKPRAITRDL 235 (556)
T ss_pred ----------------------------------------------------HHHHHhC----------CCCCcCceeeC
Confidence 2234432 57899999999
Q ss_pred ccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhh
Q 003404 371 YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYY 450 (823)
Q Consensus 371 ~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~y 450 (823)
+||+||| |++.+ ..++|||||+...|
T Consensus 236 ~WGipiP-~~~~~-----------------------------------------------------~~~iyvW~da~~~y 261 (556)
T PRK12268 236 DWGIPVP-WPGFE-----------------------------------------------------GKVFYVWFDAVIGY 261 (556)
T ss_pred CCCeeCC-CCCCC-----------------------------------------------------CcEEEEeehHhhHH
Confidence 9999999 44311 13678999988777
Q ss_pred hhhcC--CCCChhhhhhhhccccC---CceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEecccee
Q 003404 451 LRFMD--PKNSKELVDKTKERYWS---PVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQY 525 (823)
Q Consensus 451 l~~~~--p~n~~~~~~~~~~~~w~---p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~ 525 (823)
+.... ..... -......+|. |.++++.|+|++.||.+ +|+..+...+. ....| +++++||||+.
T Consensus 262 ~~~~~~~~~~~g--~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~---~~p~~l~~~~~-~~~~P-~~v~~~G~v~~---- 330 (556)
T PRK12268 262 ISASKEWAERTG--DPEAWKEFWLDPETKSYYFIGKDNIPFHSI---IWPAMLLGSGE-PLKLP-DEIVSSEYLTL---- 330 (556)
T ss_pred HHHHHHHHHhcC--CchHHHHHhCCCCCeEEEEEeeccCcchHH---HHHHHHHhcCC-CCCCC-CEeeccCCEEE----
Confidence 64311 00000 0001123442 56799999999999954 58888888774 23456 69999999873
Q ss_pred eEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchhee
Q 003404 526 MVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRL 605 (823)
Q Consensus 526 ~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl 605 (823)
+|+|||||+||+|+|.+++++||+|++||
T Consensus 331 ---------------------------------------------------~G~KMSKS~GN~I~p~dli~~yGaDalR~ 359 (556)
T PRK12268 331 ---------------------------------------------------EGGKFSKSRGWGIWVDDALERYPPDYLRY 359 (556)
T ss_pred ---------------------------------------------------CCeeeccCCCcccCHHHHHHHcCcHHHHH
Confidence 28999999999999999999999999999
Q ss_pred eeeecCCccCCccccccchHH---------HHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHH
Q 003404 606 YEMFMGPFRDSKTWNTSGIEG---------VHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTE 676 (823)
Q Consensus 606 ~ll~~~~~~~d~~~s~~~i~~---------~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~ 676 (823)
|+++.++..+|.+|+++.+.. ..|+++|+.+++.... .... + .......|.+++++++++++.+.+
T Consensus 360 ~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~--~~~~-~--~~~~~~~d~~ll~~l~~~~~~v~~ 434 (556)
T PRK12268 360 YLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYF--GGIV-P--PGELGDEDRELIAEAEALFKEVGE 434 (556)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhc--CCcC-C--CCcCCcccHHHHHHHHHHHHHHHH
Confidence 999989999999999877643 3344455555543211 0000 0 011245689999999999999999
Q ss_pred HHhcCcHHHHHHHHHHHHHHHhcc-------cc-------------chHHHHHHHHHHhCccchhhHHHHHHHcCCCCCc
Q 003404 677 EIEGTRFNTGISAMMEFINAAYKW-------EK-------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSL 736 (823)
Q Consensus 677 ~~e~~~f~~ai~~l~~~~~~~~~~-------~~-------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~sv 736 (823)
+|++|+|+.|++.+++|++..|.+ .. ...++++.+++||+|||||+|||||+.||. +++
T Consensus 435 ~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~-~~~ 513 (556)
T PRK12268 435 LLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG-ENI 513 (556)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC-CCC
Confidence 999999999999999999877653 10 112577889999999999999999999987 467
Q ss_pred cccCCCCCC
Q 003404 737 AYESFPKAN 745 (823)
Q Consensus 737 ~~~~WP~~~ 745 (823)
..+.||...
T Consensus 514 ~~~~w~~~~ 522 (556)
T PRK12268 514 EKLTWESLK 522 (556)
T ss_pred cccchhhhc
Confidence 778899764
No 32
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=4.9e-65 Score=605.64 Aligned_cols=407 Identities=18% Similarity=0.303 Sum_probs=328.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|+|++|+|+||+|||++|++.|++|+++++++.+.++++|++|||++| ++++|++|+|.+++|++|.+|+++|
T Consensus 53 ~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G 130 (801)
T PLN02610 53 LRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENN 130 (801)
T ss_pred hCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCC
Confidence 79999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccc-------------------------------cCccccCCCCeEEeccchhhhhHh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVV-------------------------------DGVSERGGHPVIRKPMRQWMLKIT 129 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~-------------------------------~g~~~~~~~~v~~~~~~qw~~~it 129 (823)
+||++..+++|||.|+|+|++.+|+ +++|.+||.+++.++.+||||+++
T Consensus 131 ~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls 210 (801)
T PLN02610 131 WLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELP 210 (801)
T ss_pred CEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhH
Confidence 9999999999999999999999885 234566889999999999999999
Q ss_pred hhHHHhhccCCC--C--CChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcch
Q 003404 130 EYADRLLDDLDD--L--DWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLL 205 (823)
Q Consensus 130 ~y~~~l~~~l~~--l--~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~ 205 (823)
+|+++|+++++. + .|+..+
T Consensus 211 ~~~~~L~~~~~~~~~~~~~~~n~--------------------------------------------------------- 233 (801)
T PLN02610 211 LLKDKLVEYINETSVAGGWSQNA--------------------------------------------------------- 233 (801)
T ss_pred HHHHHHHHHHHhCCCCCCcCHHH---------------------------------------------------------
Confidence 999999876532 0 121111
Q ss_pred hhhccccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhH
Q 003404 206 SSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDH 285 (823)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~ 285 (823)
T Consensus 234 -------------------------------------------------------------------------------- 233 (801)
T PLN02610 234 -------------------------------------------------------------------------------- 233 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCcee
Q 003404 286 EFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWL 365 (823)
Q Consensus 286 ~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ 365 (823)
...+.+||.+ .|+|||
T Consensus 234 ------------------------------------------------------~~~~~~~l~~----------gL~d~~ 249 (801)
T PLN02610 234 ------------------------------------------------------IQTTNAWLRD----------GLKPRC 249 (801)
T ss_pred ------------------------------------------------------HHHHHHHHhC----------CCCCcc
Confidence 1222345543 689999
Q ss_pred eeeccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCcccccc
Q 003404 366 FARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAG 445 (823)
Q Consensus 366 ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~Wfd 445 (823)
|||+..||+|+|. + + . +..|+|||||
T Consensus 250 IsR~~~WGipvP~----~-~------------------------~-------------------------~~~v~YVWfD 275 (801)
T PLN02610 250 ITRDLKWGVPVPL----E-K------------------------Y-------------------------KDKVFYVWFD 275 (801)
T ss_pred eeeecCCcccCCC----C-C------------------------C-------------------------CCcEEEEehh
Confidence 9999999999994 1 1 0 1258899999
Q ss_pred chhhhhhhcCCCCChhhhhhhhccccC-Cce---eeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEec
Q 003404 446 SCWYYLRFMDPKNSKELVDKTKERYWS-PVD---VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILG 521 (823)
Q Consensus 446 Ssw~yl~~~~p~n~~~~~~~~~~~~w~-p~D---~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~ 521 (823)
+...|+..+.... .+...+|. |.| +|+.|+|+++||.+ +|+++|+.+|.- . .+.+++++||+++-
T Consensus 276 Al~~Yis~~~~~~------~~~~~~W~~~~~~~~~hfiGKDi~~fH~i---~wPa~L~a~g~~-~-~~p~~i~~~g~l~~ 344 (801)
T PLN02610 276 APIGYVSITACYT------PEWEKWWKNPENVELYQFMGKDNVPFHTV---MFPSTLLGTGEN-W-TMMKTISVTEYLNY 344 (801)
T ss_pred hHHHHHHHHhhhh------hHHHHhcCCcccceEEEEEeeecchhHHH---HHHHHHHhCCCC-c-CCCCEEEeccCEec
Confidence 9999987531111 12235563 236 79999999999965 599999988741 0 13479999998763
Q ss_pred cceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHH-hCc
Q 003404 522 EMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGA 600 (823)
Q Consensus 522 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~-yGa 600 (823)
+|+|||||+||+|+|.+++++ ||+
T Consensus 345 -------------------------------------------------------eG~KMSKS~GNvV~p~~~i~~~yg~ 369 (801)
T PLN02610 345 -------------------------------------------------------EGGKFSKSKGVGVFGNDAKDTNIPV 369 (801)
T ss_pred -------------------------------------------------------CCceecCcCCcccCHHHHHhccCCc
Confidence 389999999999999999996 999
Q ss_pred chheeeeeecCCccCCccccccchHHH---------HHHHHHHHHHHHcCCCCCCCCCCCccCC-----CCcchHHHHHH
Q 003404 601 DSLRLYEMFMGPFRDSKTWNTSGIEGV---------HRFLGRMWRLIVGSSLPDGTFKGGTVVN-----DEEPTLEQLCT 666 (823)
Q Consensus 601 D~lRl~ll~~~~~~~d~~~s~~~i~~~---------~~~l~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~d~~~~~~ 666 (823)
|++||||++.++..+|.+||++.+... .|+++|+..|+.... .++.++.++. ....|.+++.+
T Consensus 370 D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~---~k~~~g~vp~~~~~~~~~~d~~Ll~~ 446 (801)
T PLN02610 370 EVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPP---GAGYGSVIPDAPGAESHPLTKKLAEK 446 (801)
T ss_pred hHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhccCCcCCCccccccchhhHHHHHH
Confidence 999999999999999999998776554 456666666653100 0223333332 12346788999
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc-------ccc----------c---hHHHHHHHHHHhCccchhhHHHH
Q 003404 667 LHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK-------WEK----------H---PRKIIEPFILLLAPYAPHMSEEL 726 (823)
Q Consensus 667 l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~-------~~~----------~---~~~~l~~l~~lLaPi~P~~aEel 726 (823)
++++++++.++|++|+|+.|++.+|+|++.+|+ |.. + ..++++.+++||+||||++|++|
T Consensus 447 ~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI 526 (801)
T PLN02610 447 VGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEV 526 (801)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 999999999999999999999999999988887 421 0 12688999999999999999999
Q ss_pred HHHcCCC
Q 003404 727 WFRLGHS 733 (823)
Q Consensus 727 w~~L~~~ 733 (823)
|++||.+
T Consensus 527 ~~~Lg~~ 533 (801)
T PLN02610 527 LKQLNLP 533 (801)
T ss_pred HHHhCCC
Confidence 9999964
No 33
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.5e-64 Score=585.02 Aligned_cols=406 Identities=22% Similarity=0.369 Sum_probs=329.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++|||+||+|||++|.+.|++|+++|+++.+.+++++++||+++| ++++|++|.|.+.+|++|.+|+++|
T Consensus 104 ~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G 181 (616)
T PLN02224 104 LLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANG 181 (616)
T ss_pred hcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999999999999999999776 9999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccc-cCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhccc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVV-DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRS 159 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~-~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s 159 (823)
+||++.++++|||.|+++|++.|+. .++|..||.+++.++.++|||++++|++.|++.++.
T Consensus 182 ~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~------------------ 243 (616)
T PLN02224 182 DIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQ------------------ 243 (616)
T ss_pred CEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHh------------------
Confidence 9999999999999999999999996 468999999999999999999999999999764321
Q ss_pred CCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhcc
Q 003404 160 EGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEK 239 (823)
Q Consensus 160 ~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (823)
+|+.
T Consensus 244 ---------------------------------------~~~~------------------------------------- 247 (616)
T PLN02224 244 ---------------------------------------NPRF------------------------------------- 247 (616)
T ss_pred ---------------------------------------CCCc-------------------------------------
Confidence 0000
Q ss_pred cceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccceE
Q 003404 240 TGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLI 319 (823)
Q Consensus 240 ~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~ 319 (823)
+
T Consensus 248 -----------------------------------------------------------~-------------------- 248 (616)
T PLN02224 248 -----------------------------------------------------------V-------------------- 248 (616)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred ecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeecc-ccCCcccEEEeCCCCceeeCCCCccCCc
Q 003404 320 VNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELPLT 398 (823)
Q Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr-~WG~PIPi~~~~~~~~~~~v~~~~lpv~ 398 (823)
.....++.+.+||.+ .|+||||||++ .||+|+|. +.
T Consensus 249 ---------------~p~~~~~~~~~~l~~----------gL~d~~ISR~~~~WGIpvP~----~~-------------- 285 (616)
T PLN02224 249 ---------------QPSYRLNEVQSWIKS----------GLRDFSISRALVDWGIPVPD----DD-------------- 285 (616)
T ss_pred ---------------CCHHHHHHHHHHHhc----------CCCCccccCCCCCCceECCC----CC--------------
Confidence 001123455667754 69999999998 69999992 21
Q ss_pred CCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhh-cCCCCChhhhhhhhccccCCceee
Q 003404 399 LPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKERYWSPVDVY 477 (823)
Q Consensus 399 lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~-~~p~n~~~~~~~~~~~~w~p~D~~ 477 (823)
..|++||||+...|+.. +.+...... . ....+|+|.|++
T Consensus 286 --------------------------------------~~viYVWfDAl~~Yls~~~~~~~~~~~-~-~~~~~~w~~~v~ 325 (616)
T PLN02224 286 --------------------------------------KQTIYVWFDALLGYISALTEDNKQQNL-E-TAVSFGWPASLH 325 (616)
T ss_pred --------------------------------------CcEEEEehhhHHHHHHHhccccccccc-c-hhhccCCCcceE
Confidence 14789999999999874 322111000 0 011345699999
Q ss_pred ecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhh
Q 003404 478 VGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKV 557 (823)
Q Consensus 478 v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 557 (823)
+.|+|++.||.+ +|+++|+..|+ ..| +++++||+++-
T Consensus 326 ~iGKDii~fH~i---~wpa~l~~~g~---~~P-~~i~~~g~l~~------------------------------------ 362 (616)
T PLN02224 326 LIGKDILRFHAV---YWPAMLMSAGL---ELP-KMVFGHGFLTK------------------------------------ 362 (616)
T ss_pred EEeecccccHHH---HHHHHHHHCCC---CCC-cEEEecccEec------------------------------------
Confidence 999999999965 59999988774 334 89999998753
Q ss_pred cccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHH---------H
Q 003404 558 MKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV---------H 628 (823)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~---------~ 628 (823)
+|+|||||+||+|+|.+++++||+|++||||++.+|..+|.+|+++.+... .
T Consensus 363 -------------------eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lg 423 (616)
T PLN02224 363 -------------------DGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423 (616)
T ss_pred -------------------CCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999998875433 3
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCccCC---CCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc------
Q 003404 629 RFLGRMWRLIVGSSLPDGTFKGGTVVN---DEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK------ 699 (823)
Q Consensus 629 ~~l~r~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~------ 699 (823)
|+++|++.++... .++..+. ....+.+++.+++++++++.++|++|+|++|+..+|+|++..|.
T Consensus 424 Nll~R~l~~~~k~-------~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~~~N~Yi~~~~ 496 (616)
T PLN02224 424 NLLNRTLGLLKKN-------CESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGNAGNTYMDQRA 496 (616)
T ss_pred HHHHHHHHHHHHh-------cCCcCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555555554321 1111111 12346788999999999999999999999999999999988876
Q ss_pred -cc----c------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 700 -WE----K------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 700 -~~----~------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
|. . .+.++++.+++||+|||||+||+||+.||.+
T Consensus 497 PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~ 547 (616)
T PLN02224 497 PWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYS 547 (616)
T ss_pred chhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCC
Confidence 31 0 1236788999999999999999999999864
No 34
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.5e-64 Score=594.32 Aligned_cols=407 Identities=22% Similarity=0.309 Sum_probs=326.5
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|+|++|||+||+||+.+|.+.|++|+++++++++.++++|++||+++| .+++|++|+|.+.+|++|.+|+++|
T Consensus 37 ~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G 114 (673)
T PRK00133 37 MRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISFD--NYGSTHSEENRELAQEIYLKLKENG 114 (673)
T ss_pred hcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999988 6999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccc-----------------------------cCccccCCCCeEEeccchhhhhHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVV-----------------------------DGVSERGGHPVIRKPMRQWMLKITEY 131 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~-----------------------------~g~~~~~~~~v~~~~~~qw~~~it~y 131 (823)
+||++..+|+|||.|+|+|++.+|+ +++|.+||.+++.+..+||||++++|
T Consensus 115 ~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~ 194 (673)
T PRK00133 115 YIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRF 194 (673)
T ss_pred CEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEEEHHHH
Confidence 9999999999999999999999886 34577889999999999999999999
Q ss_pred HHHhhccCCC-CCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhcc
Q 003404 132 ADRLLDDLDD-LDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVS 210 (823)
Q Consensus 132 ~~~l~~~l~~-l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~ 210 (823)
+++|++.++. ..||+.++..
T Consensus 195 ~~~l~~~~~~~~~~~~~~~~~----------------------------------------------------------- 215 (673)
T PRK00133 195 EEFLKEWITRSGELQPNVANK----------------------------------------------------------- 215 (673)
T ss_pred HHHHHHHHhcCCCCCHHHHHH-----------------------------------------------------------
Confidence 9999887643 2355444333
Q ss_pred ccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHH
Q 003404 211 TTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK 290 (823)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~ 290 (823)
T Consensus 216 -------------------------------------------------------------------------------- 215 (673)
T PRK00133 216 -------------------------------------------------------------------------------- 215 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeecc
Q 003404 291 FDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR 370 (823)
Q Consensus 291 ~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr 370 (823)
+.+||.+ .|+|||||||+
T Consensus 216 ----------------------------------------------------~~~~l~~----------~l~d~~ISR~~ 233 (673)
T PRK00133 216 ----------------------------------------------------MKEWLEE----------GLQDWDISRDA 233 (673)
T ss_pred ----------------------------------------------------HHHHHhC----------CCcccceeeeC
Confidence 3344432 58899999999
Q ss_pred cc-CCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhh
Q 003404 371 YW-GEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWY 449 (823)
Q Consensus 371 ~W-G~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~ 449 (823)
.| |+|+| .+ +..++|||||+.+.
T Consensus 234 ~W~GipvP----~~----------------------------------------------------~~~~iyVW~dal~~ 257 (673)
T PRK00133 234 PYFGFEIP----GA----------------------------------------------------PGKVFYVWLDAPIG 257 (673)
T ss_pred CccceECC----CC----------------------------------------------------CCeEEEEcccchhh
Confidence 99 99999 11 11478899999988
Q ss_pred hhhhc--CCCC-ChhhhhhhhccccCCc----eeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEecc
Q 003404 450 YLRFM--DPKN-SKELVDKTKERYWSPV----DVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGE 522 (823)
Q Consensus 450 yl~~~--~p~n-~~~~~~~~~~~~w~p~----D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~ 522 (823)
|+... ++.. ... ....+|.|. .+++.|+|++.||. .||+++|+..|+ ..| +++++||||+.+
T Consensus 258 Yl~~~~~~~~~~~~~----~~~~~w~~~~~~~~v~~iGkDi~~fH~---i~wpa~l~a~g~---~lP-~~v~~hg~v~~~ 326 (673)
T PRK00133 258 YISSTKNLCDKRGGL----DWDEYWKKDSDTELYHFIGKDIIYFHT---LFWPAMLEGAGY---RLP-TNVFAHGFLTVE 326 (673)
T ss_pred hhHHHhhhcccccch----hHHHhcCCCCCceEEEEEeecchhHHH---HHHHHHHHhCCC---CCC-CEEeeeccEEec
Confidence 87643 2221 111 112445233 28899999999994 469999998875 344 999999999842
Q ss_pred ceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcch
Q 003404 523 MQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADS 602 (823)
Q Consensus 523 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~ 602 (823)
|+|||||+||+|+|.+++++||+|+
T Consensus 327 -------------------------------------------------------G~KMSKS~GNvV~p~dlie~ygaDa 351 (673)
T PRK00133 327 -------------------------------------------------------GAKMSKSRGTFIWARTYLDHLDPDY 351 (673)
T ss_pred -------------------------------------------------------CCcccccCCcccCHHHHHHHcCchH
Confidence 8999999999999999999999999
Q ss_pred heeeeeecCCcc-CCccccccchHHHH--HHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHh
Q 003404 603 LRLYEMFMGPFR-DSKTWNTSGIEGVH--RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE 679 (823)
Q Consensus 603 lRl~ll~~~~~~-~d~~~s~~~i~~~~--~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e 679 (823)
+|||||+.++.. +|.+|+++.+.... +++++++|++.+......+...+..+ ....+.+++.+++++++.+.++|+
T Consensus 352 lR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~-~~~~d~~ll~~l~~~~~~v~~a~e 430 (673)
T PRK00133 352 LRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLP-DALADPELLEEFEAAAEKIAEAYE 430 (673)
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 99999988765422 24444554432110000011122222 234588999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHhc-------ccc-------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 680 GTRFNTGISAMMEFINAAYK-------WEK-------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 680 ~~~f~~ai~~l~~~~~~~~~-------~~~-------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
+|+|+.|++.+++|++..|. |.. ...++++.+++||+|||||+||+||+.||.+
T Consensus 431 ~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~~ 504 (673)
T PRK00133 431 AREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNLE 504 (673)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCCC
Confidence 99999999999999987775 321 1125778999999999999999999999864
No 35
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-63 Score=561.99 Aligned_cols=404 Identities=25% Similarity=0.446 Sum_probs=334.0
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|+|++|.|+||+|||++|++.|++|+++++++.+.+++.|+.|+|+|| .+++|++|+|.+.+|.+|.+|+++|
T Consensus 40 l~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G 117 (558)
T COG0143 40 LRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENG 117 (558)
T ss_pred hcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCC
Confidence 79999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCcccccc-----------------------------CccccCCCCeEEeccchhhhhHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVD-----------------------------GVSERGGHPVIRKPMRQWMLKITEY 131 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~-----------------------------g~~~~~~~~v~~~~~~qw~~~it~y 131 (823)
+||.+..++.|||+|+++|+|.+|+. .+|++||..++.|..++|||++++|
T Consensus 118 ~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~ 197 (558)
T COG0143 118 DIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKF 197 (558)
T ss_pred CEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHh
Confidence 99999999999999999999988862 1255666677777799999999999
Q ss_pred HHHhhccCCCCC---ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhh
Q 003404 132 ADRLLDDLDDLD---WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSL 208 (823)
Q Consensus 132 ~~~l~~~l~~l~---wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~ 208 (823)
+++|+++++... ||..
T Consensus 198 ~~~L~~~~~~~~~~~~p~~------------------------------------------------------------- 216 (558)
T COG0143 198 QDKLLEWYESNPDFIWPAN------------------------------------------------------------- 216 (558)
T ss_pred HHHHHHHHHhCccccCChH-------------------------------------------------------------
Confidence 999977654311 2222
Q ss_pred ccccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHH
Q 003404 209 VSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFA 288 (823)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~ 288 (823)
T Consensus 217 -------------------------------------------------------------------------------- 216 (558)
T COG0143 217 -------------------------------------------------------------------------------- 216 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeee
Q 003404 289 LKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR 368 (823)
Q Consensus 289 ~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISR 368 (823)
+++.+++|++. .|+||+|||
T Consensus 217 --------------------------------------------------~~ne~~~~i~~----------GL~d~~IsR 236 (558)
T COG0143 217 --------------------------------------------------RRNEVLNFLKE----------GLKDLSITR 236 (558)
T ss_pred --------------------------------------------------HHHHHHHHHHc----------cCcccceec
Confidence 34455555554 699999999
Q ss_pred -ccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccch
Q 003404 369 -QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC 447 (823)
Q Consensus 369 -Qr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSs 447 (823)
.-+||+|+| .+.+ .+++||||+.
T Consensus 237 ~~~~WGipvP----~~p~----------------------------------------------------kv~YVWfDAl 260 (558)
T COG0143 237 TDLDWGIPVP----GDPG----------------------------------------------------KVIYVWFDAL 260 (558)
T ss_pred CCCCCCccCC----CCCC----------------------------------------------------CEEEEeeccH
Confidence 668999999 2222 4788999999
Q ss_pred hhhhhhc-CCC--CChhhhhhhhccccCCce----eeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEe
Q 003404 448 WYYLRFM-DPK--NSKELVDKTKERYWSPVD----VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIIL 520 (823)
Q Consensus 448 w~yl~~~-~p~--n~~~~~~~~~~~~w~p~D----~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl 520 (823)
..|+..+ ... .... +. +.|+|.| +|+.|+|+++||.+ ||+++|+.+++- .| +++++||+++
T Consensus 261 igYisa~~~~~~~~~~~----~~-~~~W~~~~~e~vhfIGKDii~FHav---~wPamL~~~~~~---lP-~~i~ahg~l~ 328 (558)
T COG0143 261 IGYISALGELAEIGDDE----DF-KKFWPADDTELVHFIGKDIIRFHAV---YWPAMLMAAGLP---LP-TRIFAHGFLT 328 (558)
T ss_pred HHHHHHhcchhccCChH----HH-HhhCCCCCceEEEEeccccCcchhh---HHHHHHHhCCCC---CC-CEEEeeeeEE
Confidence 9998743 221 1111 12 3455888 99999999999955 699999999863 44 8999999887
Q ss_pred ccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCc
Q 003404 521 GEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 600 (823)
Q Consensus 521 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGa 600 (823)
- +|+|||||+||+|+|.+++++||+
T Consensus 329 ~-------------------------------------------------------~G~KmSKSrG~~V~~~~~~~~~~~ 353 (558)
T COG0143 329 L-------------------------------------------------------EGQKMSKSRGNVVDPDELLEQYGV 353 (558)
T ss_pred E-------------------------------------------------------CCccccccCCcEEeHHHHHHHcCc
Confidence 4 389999999999999999999999
Q ss_pred chheeeeeecCCccCCccccccchHHH---------HHHHHHHHHHHHcCCCCCCCCCCCccCCC----CcchHHHHHHH
Q 003404 601 DSLRLYEMFMGPFRDSKTWNTSGIEGV---------HRFLGRMWRLIVGSSLPDGTFKGGTVVND----EEPTLEQLCTL 667 (823)
Q Consensus 601 D~lRl~ll~~~~~~~d~~~s~~~i~~~---------~~~l~r~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~~~~l 667 (823)
|++||||++..|.++|.+||++.+... .|+++|+..|+.. +.++.++.. ...|.+++..+
T Consensus 354 D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k-------~~~g~vp~~~~~~~~~d~~~~~~~ 426 (558)
T COG0143 354 DALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK-------YFDGVVPAAGAPDLEEDEELLALA 426 (558)
T ss_pred hHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCcCCccccccchhhHHHHHHH
Confidence 999999999999999999998877653 4567777777643 233333321 13567788999
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc-------cccc--------------hHHHHHHHHHHhCccchhhHHHH
Q 003404 668 HKCIAKVTEEIEGTRFNTGISAMMEFINAAYK-------WEKH--------------PRKIIEPFILLLAPYAPHMSEEL 726 (823)
Q Consensus 668 ~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~-------~~~~--------------~~~~l~~l~~lLaPi~P~~aEel 726 (823)
.++..++.++|+.++|++|+.++|+++..+|+ |... ..++++.+++||+||||.+|+++
T Consensus 427 ~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki 506 (558)
T COG0143 427 REALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKI 506 (558)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHH
Confidence 99999999999999999999999999999988 3211 12678999999999999999999
Q ss_pred HHHcCCCCCcc
Q 003404 727 WFRLGHSNSLA 737 (823)
Q Consensus 727 w~~L~~~~sv~ 737 (823)
|++||.+.+..
T Consensus 507 ~~~L~~~~~~~ 517 (558)
T COG0143 507 WDQLGLEEDAR 517 (558)
T ss_pred HHHhCCccccc
Confidence 99999775543
No 36
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.6e-63 Score=580.81 Aligned_cols=407 Identities=23% Similarity=0.357 Sum_probs=326.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|+|++|||+||+||+.+|.+.|++|++++.++.+.+++++++||+++| .+++|+++.|.+.++++|.+|+++|
T Consensus 34 ~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG 111 (530)
T TIGR00398 34 LRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD--RFIRTTDEEHKEIVQKIFQKLKENG 111 (530)
T ss_pred hcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999988 5889999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccC-----------------------------ccccCCCCeEEeccchhhhhHhhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDG-----------------------------VSERGGHPVIRKPMRQWMLKITEY 131 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g-----------------------------~~~~~~~~v~~~~~~qw~~~it~y 131 (823)
+||++..+|+|||.|+|+|++.+|+.+ +|++||.+++.+..+||||++++|
T Consensus 112 ~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~ 191 (530)
T TIGR00398 112 YIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAF 191 (530)
T ss_pred CEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHH
Confidence 999999999999999999999976533 478899999999999999999999
Q ss_pred HHHhhccCCC---C-CChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhh
Q 003404 132 ADRLLDDLDD---L-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSS 207 (823)
Q Consensus 132 ~~~l~~~l~~---l-~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~ 207 (823)
+++|++.++. . .||+.++.+
T Consensus 192 ~~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 215 (530)
T TIGR00398 192 EKELEEWIRKNPESGSPASNVKNK-------------------------------------------------------- 215 (530)
T ss_pred HHHHHHHHHhCCccCCCcHHHHHH--------------------------------------------------------
Confidence 9999876542 1 133333222
Q ss_pred hccccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHH
Q 003404 208 LVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF 287 (823)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~ 287 (823)
T Consensus 216 -------------------------------------------------------------------------------- 215 (530)
T TIGR00398 216 -------------------------------------------------------------------------------- 215 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHcCCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeee
Q 003404 288 ALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFA 367 (823)
Q Consensus 288 ~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~IS 367 (823)
+.+||.. .++|||||
T Consensus 216 -------------------------------------------------------~~~~l~~----------~l~d~~iS 230 (530)
T TIGR00398 216 -------------------------------------------------------AQNWLKG----------GLKDLAIT 230 (530)
T ss_pred -------------------------------------------------------HHHHHhC----------CCCCcccc
Confidence 2244432 48999999
Q ss_pred eccc-cCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccc
Q 003404 368 RQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGS 446 (823)
Q Consensus 368 RQr~-WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdS 446 (823)
||+. ||+|||.+ ++ +++|||||+
T Consensus 231 R~~~~WGipvP~~----~~----------------------------------------------------~~~yvW~da 254 (530)
T TIGR00398 231 RDLVYWGIPVPND----PN----------------------------------------------------KVVYVWFDA 254 (530)
T ss_pred CcCCCCCeeCCCC----CC----------------------------------------------------cEEEEeecc
Confidence 9999 99999952 11 367899999
Q ss_pred hhhhhhh-cCCCCChhhhhhhhccccCCce-----eeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEe
Q 003404 447 CWYYLRF-MDPKNSKELVDKTKERYWSPVD-----VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIIL 520 (823)
Q Consensus 447 sw~yl~~-~~p~n~~~~~~~~~~~~w~p~D-----~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl 520 (823)
+..|+.. +.+..... +. +.|+|.| +++.|+|++.+|.+ ||+++|..+++ .|++++++||||+
T Consensus 255 ~~~y~~~~~~~~~~~~----~~-~~~w~~~~~~~~v~~~G~Di~~~h~~---~~~a~l~~~~~----~~~~~~~~~g~v~ 322 (530)
T TIGR00398 255 LIGYISSLGILSGDTE----DW-KKWWNNDEDAELIHFIGKDIVRFHTI---YWPAMLMGLGL----PLPTQVFSHGYLT 322 (530)
T ss_pred hHHhHhhhccccCChh----hH-HHhCCCCCCceEEEEEecccchhHHH---HHHHHHHhCCC----CCCCEEEeeccEE
Confidence 8766653 33322111 11 3355888 99999999999965 59998888773 5789999999998
Q ss_pred ccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCc
Q 003404 521 GEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 600 (823)
Q Consensus 521 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGa 600 (823)
.+ |+|||||+||+|+|.+++++||+
T Consensus 323 ~~-------------------------------------------------------g~KmSKS~Gn~i~~~d~i~~~g~ 347 (530)
T TIGR00398 323 VE-------------------------------------------------------GGKMSKSLGNVVDPSDLLARFGA 347 (530)
T ss_pred EC-------------------------------------------------------CceecccCCceecHHHHHHHcCc
Confidence 53 89999999999999999999999
Q ss_pred chheeeeeecCCccCCccccccchHHHH--HHHHHHHHHHHcCCCCCCCCCCCccC---CCCcchHHHHHHHHHHHHHHH
Q 003404 601 DSLRLYEMFMGPFRDSKTWNTSGIEGVH--RFLGRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKVT 675 (823)
Q Consensus 601 D~lRl~ll~~~~~~~d~~~s~~~i~~~~--~~l~r~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~~l~~~~~~v~ 675 (823)
|++|||+++.++..+|.+|+++.+.... ++++++++++.+......++.++..+ .....|.+++.+++++.+.+.
T Consensus 348 D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~ 427 (530)
T TIGR00398 348 DILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQID 427 (530)
T ss_pred hHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 9999999988889999999988876653 23333333321100000000011111 123458889999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHHHhcccc-------------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 676 EEIEGTRFNTGISAMMEFINAAYKWEK-------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 676 ~~~e~~~f~~ai~~l~~~~~~~~~~~~-------------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
++|++|+|+.|++.+++|++..|.|.. ...++++.++++|+|||||+||+||+.|+.+
T Consensus 428 ~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 504 (530)
T TIGR00398 428 EAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNFE 504 (530)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 999999999999999999987776410 1237899999999999999999999999854
No 37
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-61 Score=561.00 Aligned_cols=406 Identities=24% Similarity=0.391 Sum_probs=324.8
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|.|++|+|+||+||+.+|.+.|++|++++.++.+.++++|++||+.+| .+++|+++.|.+.++++|.+|+++|
T Consensus 36 ~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G 113 (511)
T PRK11893 36 LRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANG 113 (511)
T ss_pred hcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999999999999999999887 6899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCc--cccCCCCeEEeccchhhhhHhhhHHHhhccCCCC-C--ChHHHHHHHHhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGV--SERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-D--WPESVKEMQRNW 155 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~--~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l-~--wp~~v~~~q~~w 155 (823)
+||++..+|+||+.|+|+|+++|+.++. |++||.+++.+..+||||++++|+++|.+.++.. . ||+
T Consensus 114 ~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~--------- 184 (511)
T PRK11893 114 DIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPA--------- 184 (511)
T ss_pred CEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCH---------
Confidence 9999999999999999999999998754 9999999999999999999999999986643210 0 011
Q ss_pred hcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhh
Q 003404 156 IGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTEL 235 (823)
Q Consensus 156 ig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (823)
T Consensus 185 -------------------------------------------------------------------------------- 184 (511)
T PRK11893 185 -------------------------------------------------------------------------------- 184 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccc
Q 003404 236 QKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTG 315 (823)
Q Consensus 236 ~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~ 315 (823)
T Consensus 185 -------------------------------------------------------------------------------- 184 (511)
T PRK11893 185 -------------------------------------------------------------------------------- 184 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeee-ccccCCcccEEEeCCCCceeeCCCCc
Q 003404 316 EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR-QRYWGEPIPVVFLDGTGETVPLHEAE 394 (823)
Q Consensus 316 ~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISR-Qr~WG~PIPi~~~~~~~~~~~v~~~~ 394 (823)
...+.+.+|+.+ +++|||||| |++||+|||. +.
T Consensus 185 ----------------------~~~~~~~~~l~~----------~~~D~~isR~~~~WGipiP~----~~---------- 218 (511)
T PRK11893 185 ----------------------SRRNEVISFVKS----------GLKDLSISRTNFDWGIPVPG----DP---------- 218 (511)
T ss_pred ----------------------HHHHHHHHHHHC----------CCCCcccCCCCCCCCccCCC----CC----------
Confidence 112233345543 589999999 9999999994 10
Q ss_pred cCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhh-cCCCCChhhhhhhhccccCC
Q 003404 395 LPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKERYWSP 473 (823)
Q Consensus 395 lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~-~~p~n~~~~~~~~~~~~w~p 473 (823)
.+++||||||++.|+.. +.|.+...+ ..+ ..+|+|
T Consensus 219 ------------------------------------------~~~~~vWfda~~~y~s~~~~p~~~~~~-~~~-~~~~~~ 254 (511)
T PRK11893 219 ------------------------------------------KHVIYVWFDALTNYLTALGYPDDEELL-AEL-FNKYWP 254 (511)
T ss_pred ------------------------------------------CceEEEEecCcHHHHhHhccccccccc-hhH-HHhcCC
Confidence 14678999998776653 555432211 011 244569
Q ss_pred ceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccc
Q 003404 474 VDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIP 553 (823)
Q Consensus 474 ~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 553 (823)
.|++++|+|++.+|+++ |++++...+ ...| +++++||||+.
T Consensus 255 ~D~~~~G~D~~~~h~~~---~~a~~~a~~---~~~p-~~~~~~g~v~~-------------------------------- 295 (511)
T PRK11893 255 ADVHLIGKDILRFHAVY---WPAFLMAAG---LPLP-KRVFAHGFLTL-------------------------------- 295 (511)
T ss_pred CcceEecccccccchhH---HHHHHHhCC---CCCC-CEEEeeccEEE--------------------------------
Confidence 99999999999999664 777766653 3567 99999999874
Q ss_pred hhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHH----
Q 003404 554 EEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR---- 629 (823)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~---- 629 (823)
+|+|||||+||+|+|.+++++||+|++|||+++.++..++.+|+++.+..+.+
T Consensus 296 -----------------------~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~ 352 (511)
T PRK11893 296 -----------------------DGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLA 352 (511)
T ss_pred -----------------------CCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHH
Confidence 28999999999999999999999999999999888999999999988865432
Q ss_pred -----HHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcccc--
Q 003404 630 -----FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK-- 702 (823)
Q Consensus 630 -----~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~~-- 702 (823)
+++|+.+++.... ....+.. ......+.+++.+++++.+.+.++|++|+|+.|++.+++|++.+|.+..
T Consensus 353 ~~l~n~~~r~~~~~~~~~---~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~~n~y~~~~ 428 (511)
T PRK11893 353 NDLGNLAQRTLSMIAKNF---DGKVPEP-GALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVRAANKYIDEQ 428 (511)
T ss_pred HHHHHHHHHHHHHHHHhc---CCCCCCC-cccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 2333333332110 0011100 0123456788899999999999999999999999999999988775311
Q ss_pred ------------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 703 ------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 703 ------------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
...++++.+++||+|||||+||+||+.|+.+
T Consensus 429 ~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 477 (511)
T PRK11893 429 APWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE 477 (511)
T ss_pred CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCC
Confidence 1236788999999999999999999999864
No 38
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-57 Score=469.13 Aligned_cols=412 Identities=24% Similarity=0.394 Sum_probs=333.4
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
++|..|+|..|.|+|||.|..+|..+|.+|.++|+++.+.+++.++..|+.|+ ++++|+||++.+.||.++..++++|
T Consensus 74 lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG 151 (578)
T KOG0436|consen 74 LKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNG 151 (578)
T ss_pred hcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccc-cCc------cccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCChHHHHHHHH
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVV-DGV------SERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 153 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~-~g~------~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~ 153 (823)
+||++....+||.+|+|++.+++|. +.+ +..||.+|+.++..+|||+++.|.++|.+.|+.
T Consensus 152 ~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrk------------ 219 (578)
T KOG0436|consen 152 DIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRK------------ 219 (578)
T ss_pred ceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhc------------
Confidence 9999999999999999999999995 333 346788999999999999999999999876532
Q ss_pred hhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhh
Q 003404 154 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 233 (823)
Q Consensus 154 ~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (823)
||+.
T Consensus 220 ---------------------------------------------NP~f------------------------------- 223 (578)
T KOG0436|consen 220 ---------------------------------------------NPRF------------------------------- 223 (578)
T ss_pred ---------------------------------------------CCCc-------------------------------
Confidence 1110
Q ss_pred hhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccc
Q 003404 234 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 313 (823)
Q Consensus 234 ~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~ 313 (823)
|.|.
T Consensus 224 -----------------------------------------------------------------vqPs----------- 227 (578)
T KOG0436|consen 224 -----------------------------------------------------------------VQPS----------- 227 (578)
T ss_pred -----------------------------------------------------------------cCch-----------
Confidence 0010
Q ss_pred cccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeee--cc-ccCCcccEEEeCCCCceeeC
Q 003404 314 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR--QR-YWGEPIPVVFLDGTGETVPL 390 (823)
Q Consensus 314 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISR--Qr-~WG~PIPi~~~~~~~~~~~v 390 (823)
-...+|.+||+. .|+|-.||| +| .||+|+| .+
T Consensus 228 ------------------------~~~~qVl~~lkt----------glpDlSISRpsarl~WGIPvP----~d------- 262 (578)
T KOG0436|consen 228 ------------------------YFHNQVLSWLKT----------GLPDLSISRPSARLDWGIPVP----GD------- 262 (578)
T ss_pred ------------------------HHHHHHHHHHHc----------CCCcccccChhhhcccCCCCC----CC-------
Confidence 024567888876 699999999 88 5999999 22
Q ss_pred CCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhh-cCCCCChhhhhhhhcc
Q 003404 391 HEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKER 469 (823)
Q Consensus 391 ~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~-~~p~n~~~~~~~~~~~ 469 (823)
+..|++||||+..+|+.. ++|...... +....
T Consensus 263 ---------------------------------------------dsQtIYVWfDAL~nYiSvig~~~~~~N~--k~~ls 295 (578)
T KOG0436|consen 263 ---------------------------------------------DSQTIYVWFDALLNYISVIGYPNKQQNL--KTALS 295 (578)
T ss_pred ---------------------------------------------CcceEEEeHHHHhhHHHhhcCCchhccc--cceee
Confidence 225889999999999874 566422111 11236
Q ss_pred ccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccc
Q 003404 470 YWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQ 549 (823)
Q Consensus 470 ~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 549 (823)
.|+|+.+|+.|+|+++||.+| |++||+..|+ ++-+.++.||+++-
T Consensus 296 ~~wPat~HvIGKDIlrFHavY---WPafLmaAGl----plP~~I~vHghwt~---------------------------- 340 (578)
T KOG0436|consen 296 FGWPATLHVIGKDILRFHAVY---WPAFLMAAGL----PLPKMIFVHGHWTK---------------------------- 340 (578)
T ss_pred cCCCceeeehhhhhhhhhhhh---hHHHHHhcCC----CCccEEEEeeeeee----------------------------
Confidence 788999999999999999765 9999999997 44489999998863
Q ss_pred cccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 550 ESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
+|.|||||+||||||.+++++||+|++||||+..+-.+.|.+|+++.+....+
T Consensus 341 ---------------------------ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n 393 (578)
T KOG0436|consen 341 ---------------------------NGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVN 393 (578)
T ss_pred ---------------------------cceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999888876553
Q ss_pred -HHHHHH----HHHHcCCCCCCCCCCCcc----CCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc-
Q 003404 630 -FLGRMW----RLIVGSSLPDGTFKGGTV----VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK- 699 (823)
Q Consensus 630 -~l~r~~----~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~- 699 (823)
.|.+.| +...+..++... ..... +.....+..+...+.++.+.+.+.|++|.+..|++++...+++.|.
T Consensus 394 ~~La~~lG~LlnRc~gkkln~sn-~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntl 472 (578)
T KOG0436|consen 394 AHLANTLGNLLNRCLGKKLNISN-CESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTL 472 (578)
T ss_pred HHHHHHHHHHHHHHhhcccChhc-cccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHHhhhhh
Confidence 344433 333332221111 01111 1112234456778899999999999999999999999999998876
Q ss_pred ------ccc----------------chHHHHHHHHHHhCccchhhHHHHHHHcCCC
Q 003404 700 ------WEK----------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 733 (823)
Q Consensus 700 ------~~~----------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~ 733 (823)
|.. ...+++|++.+||+|++|.+|.+++++||..
T Consensus 473 vq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 473 VQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred hhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 421 1238899999999999999999999999864
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.5e-56 Score=490.88 Aligned_cols=284 Identities=35% Similarity=0.661 Sum_probs=232.9
Q ss_pred CCCCcccccccCCccchHHHHHHHHh-CCCC----------------hHHHHHHHHHHHHHHHHhcCcccCCCeeecCCh
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIET-GTHP----------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEP 63 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~-g~~p----------------~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p 63 (823)
|+||+|+|++||||||||||.+|++. |+++ ++++.++++.++++|++||++.||++++.|+++
T Consensus 36 ~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~ 115 (338)
T cd00818 36 MQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDP 115 (338)
T ss_pred hcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCH
Confidence 78999999999999999999999985 8766 689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC
Q 003404 64 AYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD 143 (823)
Q Consensus 64 ~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~ 143 (823)
+|.+.++++|.+|+++|+||++..+|+| +++.+..+||||++++|+++|++.++..+
T Consensus 116 ~~~~~v~~~f~~L~~~G~iY~~~~~v~~-----------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~ 172 (338)
T cd00818 116 EYMESVWWVFKQLHEKGLLYRGYKVVPW-----------------------PLIYRATPQWFIRVTKIKDRLLEANDKVN 172 (338)
T ss_pred HHHHHHHHHHHHHHHCCCEeccCCeeee-----------------------EEEEEecCeEEEEcHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999 78889999999999999999988665443
Q ss_pred C-hHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHH
Q 003404 144 W-PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKN 222 (823)
Q Consensus 144 w-p~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~ 222 (823)
| |+.++.
T Consensus 173 ~~P~~~~~------------------------------------------------------------------------ 180 (338)
T cd00818 173 WIPEWVKN------------------------------------------------------------------------ 180 (338)
T ss_pred EECHHHHH------------------------------------------------------------------------
Confidence 2 333332
Q ss_pred HHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCC
Q 003404 223 LASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPD 302 (823)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~ 302 (823)
T Consensus 181 -------------------------------------------------------------------------------- 180 (338)
T cd00818 181 -------------------------------------------------------------------------------- 180 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeC
Q 003404 303 DESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLD 382 (823)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~ 382 (823)
.+.+|+. +|+||||||||.||+|||+|+|+
T Consensus 181 ---------------------------------------~~~~~l~-----------~l~dw~iSR~~~WGip~P~~~~~ 210 (338)
T cd00818 181 ---------------------------------------RFGNWLE-----------NRRDWCISRQRYWGTPIPVWYCE 210 (338)
T ss_pred ---------------------------------------HHHHHHh-----------cchhcceeeecccCceeeEEEec
Confidence 3333442 47899999999999999999997
Q ss_pred CCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccch-hhhhhhcCCCCChh
Q 003404 383 GTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKE 461 (823)
Q Consensus 383 ~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSs-w~yl~~~~p~n~~~ 461 (823)
+||.+++ .|+++|+||||||+ +|+....+|.+..+
T Consensus 211 ~~~~~~~--------------------------------------------~~~~~v~~vWfda~~~~~~~~~~~~~~~~ 246 (338)
T cd00818 211 DCGEVLV--------------------------------------------RRVPDVLDVWFDSGSMPYAQLHYPFENED 246 (338)
T ss_pred CCCeEEE--------------------------------------------ecCCceEEEEEeCCCCHHHHcCCCCcchh
Confidence 6653221 35779999999996 44444445544321
Q ss_pred hhhhhhccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCC
Q 003404 462 LVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADST 541 (823)
Q Consensus 462 ~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~ 541 (823)
.++|+|+|+++.|+|++++|+-+ -+|++. +.....||+++++||+++..
T Consensus 247 ------~~~~~p~d~~~~GkDii~~wf~~-~~~~~~-----~~~~~~p~~~~~~hg~~~~~------------------- 295 (338)
T cd00818 247 ------FEELFPADFILEGSDQTRGWFYS-LLLLST-----ALFGKAPYKNVIVHGFVLDE------------------- 295 (338)
T ss_pred ------hhccCCCeEEeecchHHhHHHHH-HHHHHH-----HhcCCCccceEEEEeeEECC-------------------
Confidence 25578999999999998533221 223332 22346899999999998743
Q ss_pred CccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccc
Q 003404 542 DTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTW 619 (823)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~ 619 (823)
+|+|||||+||+|+|.+++++||+|++||||++.++.++|..|
T Consensus 296 -----------------------------------~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 296 -----------------------------------DGRKMSKSLGNYVDPQEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred -----------------------------------CCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 3899999999999999999999999999999999988888754
No 40
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-51 Score=451.65 Aligned_cols=561 Identities=21% Similarity=0.317 Sum_probs=362.8
Q ss_pred HHHHHHhcCcccCCCeeecCC--hhHHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEe
Q 003404 42 RTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK 119 (823)
Q Consensus 42 ~~~~~~lG~~~Dw~~~~~T~~--p~y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~ 119 (823)
.+.+++||+.+||+|.+.|+| |.|.+++.|.|.+|.+.|-|-.+++..-|||.+++.+.|++...|....- ..++.
T Consensus 189 ~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR~sGEgV~P-qeytl- 266 (1080)
T KOG0437|consen 189 ERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDRASGEGVGP-QEYTL- 266 (1080)
T ss_pred HHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccccccCCCCCc-ceEEE-
Confidence 468999999999999999976 99999999999999999999999999999999999999999875532210 11111
Q ss_pred ccchhhhhHhhhHHHhhccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecC-----CC-CCcCcEEEEEcCCcChhhcc
Q 003404 120 PMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDS-----DG-QERDIKITVYTTRPDTIFGA 193 (823)
Q Consensus 120 ~~~qw~~~it~y~~~l~~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~-----~~-~~~~~~l~v~TT~P~Tl~~~ 193 (823)
++.++.+. .+ ...+.+++++|-||+|++|.
T Consensus 267 --------------------------------------------iKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQ 302 (1080)
T KOG0437|consen 267 --------------------------------------------IKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQ 302 (1080)
T ss_pred --------------------------------------------EEEEecccchhhccccccceeeeeehhcCCccccCc
Confidence 12221111 00 11247899999999999999
Q ss_pred cEEEECCCCcchhhhccccc--------hHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCC-CeecEEEeCc
Q 003404 194 TYLVVAPEHPLLSSLVSTTQ--------SQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG-EAIPIWVADY 264 (823)
Q Consensus 194 ~~i~v~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~-~~~pi~~~~~ 264 (823)
+...|+|+..|.......+. ....-.|.......+.. .-+.+..|..+.|.....|++- ..+.+++..-
T Consensus 303 Tnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~--~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlT 380 (1080)
T KOG0437|consen 303 TNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVV--SCLVTITGYDLIGAPLSAPLSVYERVYALPMLT 380 (1080)
T ss_pred cceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcc--cceeeecchhhcCCcccCcchhhheeeecccee
Confidence 99999999998433322111 01111121111111100 1122345667888888889874 6788888999
Q ss_pred cccCCCCceEEecCCCChhhHHHHHH-------cCC-------ceeeeccCCC-CCCc--------------------c-
Q 003404 265 VLGSYGTGAIMAVPAHDTRDHEFALK-------FDI-------SIHSVVMPDD-ESSS--------------------Q- 308 (823)
Q Consensus 265 V~~~~GTG~V~~~P~h~~~D~~~~~~-------~~l-------~~~~vv~~~~-~~~~--------------------~- 308 (823)
|..+.|||+|.+||+..++||...+. ||| +++++|.-.+ |... +
T Consensus 381 i~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaea 460 (1080)
T KOG0437|consen 381 ILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEA 460 (1080)
T ss_pred eeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHh
Confidence 99999999999999999999977632 454 2333333221 1000 0
Q ss_pred ccccccc---cceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCC--------------------------------
Q 003404 309 SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNG-------------------------------- 353 (823)
Q Consensus 309 ~~~~~~~---~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~-------------------------------- 353 (823)
....|.. +|+|+-. .+.|..+.++...|...|.+.|..
T Consensus 461 K~~~y~e~fy~g~mlig-------~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiVAL~DQWYldYgE 533 (1080)
T KOG0437|consen 461 KKLAYLEGFYEGTMLIG-------KYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDECIVALCDQWYLDYGE 533 (1080)
T ss_pred hHHHHHHhhhcceEEEe-------ccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCceEEEeccchhhhcCc
Confidence 0001100 1333221 234444444444444444443331
Q ss_pred ------------------------ceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCCcCCccccc---C
Q 003404 354 ------------------------KKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDF---T 406 (823)
Q Consensus 354 ------------------------~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~---~ 406 (823)
-..+-.+|..|.+||.-.-||.||+ +..--+-.++++.+++....+.++ .
T Consensus 534 ~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPW---D~qyLvESLSDSTIYmAyYTvaHll~~d 610 (1080)
T KOG0437|consen 534 AEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPW---DEQYLVESLSDSTIYMAYYTVAHLLHRD 610 (1080)
T ss_pred HHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCC---cHHHHHHhcchhHHHHHHHHHHHHHHHh
Confidence 1111225789999999999999997 333333455666666544333322 1
Q ss_pred CCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhc--CCCCC---hhhhh--hhhccccCCceeeec
Q 003404 407 PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM--DPKNS---KELVD--KTKERYWSPVDVYVG 479 (823)
Q Consensus 407 ~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~--~p~n~---~~~~~--~~~~~~w~p~D~~v~ 479 (823)
..|...+||. ... | +--|..|.|+-.. +|.+. .+.++ +...+||+|.|+.++
T Consensus 611 ~~g~~~~plg--------------i~~----~---QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvs 669 (1080)
T KOG0437|consen 611 LYGKVEGPLG--------------IKP----D---QMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVS 669 (1080)
T ss_pred hccCCcccCC--------------CCh----h---hcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcccceeeeec
Confidence 1232222221 111 1 1124567776543 23332 12222 123489999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchhhhcc
Q 003404 480 GAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMK 559 (823)
Q Consensus 480 G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (823)
|+|.+.+||.|..|-|..|++.. .-| +.+.+.|+++
T Consensus 670 GKDLi~NHLtfflynHvAl~~~k----~WP-kgiraNGHLm--------------------------------------- 705 (1080)
T KOG0437|consen 670 GKDLIPNHLTFFLYNHVALFPEK----KWP-KGIRANGHLM--------------------------------------- 705 (1080)
T ss_pred cccccccceeEeeeehhhhcccc----cCc-cceeeCceEE---------------------------------------
Confidence 99999999999888899888743 234 5555566554
Q ss_pred cCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHH
Q 003404 560 SGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIV 639 (823)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~ 639 (823)
. |++|||||.||+.+.++.+++||||+.|+.|+.+|...+|.||.+...+. .+-|+++.+.
T Consensus 706 -------L---------NsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnA---aILRLyt~~e 766 (1080)
T KOG0437|consen 706 -------L---------NSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANA---AILRLYTYVE 766 (1080)
T ss_pred -------e---------cchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccH---HHHHHHHHHH
Confidence 2 38999999999999999999999999999999999999999997654332 3444444331
Q ss_pred ---cCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHhcccc---------chHH
Q 003404 640 ---GSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGIS-AMMEFINAAYKWEK---------HPRK 706 (823)
Q Consensus 640 ---~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~-~l~~~~~~~~~~~~---------~~~~ 706 (823)
...-.......+ +.....|+-+..+++.++...+++|+...|..|+. .+++|.+.-..|.. ....
T Consensus 767 w~eEm~~~~s~LrtG--p~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel~g~~mh~dLv~r 844 (1080)
T KOG0437|consen 767 WIEEMCENRSSLRTG--PASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYRELCGEGMHRDLVFR 844 (1080)
T ss_pred HHHHHHhhHHhhccC--chhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 000000001111 11235678889999999999999999999999996 45666554332221 1235
Q ss_pred HHHHHHHHhCccchhhHHHHHHHcCCCCCccccCCCCCCc
Q 003404 707 IIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANP 746 (823)
Q Consensus 707 ~l~~l~~lLaPi~P~~aEelw~~L~~~~sv~~~~WP~~~e 746 (823)
.+++.+.||+||+||+||.||+.++.++......||.+++
T Consensus 845 ~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v~~~wP~~s~ 884 (1080)
T KOG0437|consen 845 FIETQTLLLAPICPHLAEYIWRTVLKKNFSVNVGWPFVSP 884 (1080)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhccCCceeecCCCCCCC
Confidence 6788899999999999999999887665555569999865
No 41
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3.7e-50 Score=436.70 Aligned_cols=270 Identities=55% Similarity=1.049 Sum_probs=231.5
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|.|++|+|+||+|||.+|.+.|.+|++++.++.+.+++++++||+++||+++++|++|+|.+.+|++|.+|+++|
T Consensus 35 ~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G 114 (314)
T cd00812 35 MQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKG 114 (314)
T ss_pred HcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhH--hhhHHHhhccCCCCC-ChHHHHHHHHhhhc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKI--TEYADRLLDDLDDLD-WPESVKEMQRNWIG 157 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~i--t~y~~~l~~~l~~l~-wp~~v~~~q~~wig 157 (823)
+||++..+|+|| +..+||||++ ++|++.|++.++... ||+.++...++
T Consensus 115 ~iy~~~~~v~~~--------------------------~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~--- 165 (314)
T cd00812 115 LAYKKEAPVNWC--------------------------KLLDQWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQEN--- 165 (314)
T ss_pred CEEecCceeeee--------------------------CccceEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHH---
Confidence 999999999999 5678999999 999999988776554 55544433222
Q ss_pred ccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhh
Q 003404 158 RSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQK 237 (823)
Q Consensus 158 ~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (823)
T Consensus 166 -------------------------------------------------------------------------------- 165 (314)
T cd00812 166 -------------------------------------------------------------------------------- 165 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccc
Q 003404 238 EKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEG 317 (823)
Q Consensus 238 ~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g 317 (823)
T Consensus 166 -------------------------------------------------------------------------------- 165 (314)
T cd00812 166 -------------------------------------------------------------------------------- 165 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeeccccCCcccEEEeCCCCceeeCCCCccCC
Q 003404 318 LIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPL 397 (823)
Q Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr~WG~PIPi~~~~~~~~~~~v~~~~lpv 397 (823)
|+. ||||+.||+|+|+ +
T Consensus 166 ----------------------------~l~-----------------isR~~~wGipvP~------~------------ 182 (314)
T cd00812 166 ----------------------------WIG-----------------CSRQRYWGTPIPW------T------------ 182 (314)
T ss_pred ----------------------------Hhe-----------------eeeecCCcCCcCc------c------------
Confidence 221 8999999999995 0
Q ss_pred cCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhcCCCCChhh------hhhhhcccc
Q 003404 398 TLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKEL------VDKTKERYW 471 (823)
Q Consensus 398 ~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~~p~n~~~~------~~~~~~~~w 471 (823)
+++|+|+||+|||+.|+...+.... ..++..++|
T Consensus 183 ----------------------------------------~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w 222 (314)
T cd00812 183 ----------------------------------------DTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW 222 (314)
T ss_pred ----------------------------------------cccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHh
Confidence 3678999999999888654421100 112234678
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccc
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQES 551 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 551 (823)
+|+|+|++|+||+.+|++|.++|+.+|...|++ ...|+++++.||||+.
T Consensus 223 ~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~-~~~~~~~~~~~g~v~~------------------------------ 271 (314)
T cd00812 223 YPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLV-TDEPPKGLIVQGMVLL------------------------------ 271 (314)
T ss_pred CCCeeeecchhHHHHHHHHHHHHHHHHcCcccc-cccCcHHheecceEec------------------------------
Confidence 999999999999999999999999999999865 4567789999999874
Q ss_pred cchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCcccc
Q 003404 552 IPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 620 (823)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s 620 (823)
+|+|||||+||+|+|.+++++||+|++|||+++.++ .+.+|+
T Consensus 272 -------------------------~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~--~~~~f~ 313 (314)
T cd00812 272 -------------------------EGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP--PDADFD 313 (314)
T ss_pred -------------------------CccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC--cCCCCC
Confidence 289999999999999999999999999999998877 666665
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=7.7e-51 Score=451.99 Aligned_cols=307 Identities=28% Similarity=0.464 Sum_probs=235.5
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|+|++|+|+||+||+++|.+.|++|++++.++.+.+++.|++|||++| ++++|+++.|++++|++|.+|+++|
T Consensus 34 ~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G 111 (391)
T PF09334_consen 34 LRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNG 111 (391)
T ss_dssp HTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--EEEETTSHHHHHHHHHHHHHHHHTT
T ss_pred hcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCcc-------------ccCCCCeE-----------------EeccchhhhhHhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVS-------------ERGGHPVI-----------------RKPMRQWMLKITE 130 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~-------------~~~~~~v~-----------------~~~~~qw~~~it~ 130 (823)
+||+++.+++||+.|+++|++.+|+ |.| +.||.+++ .++++||||++++
T Consensus 112 ~I~~~~~~~~Yc~~~e~fl~e~~v~-g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~ 190 (391)
T PF09334_consen 112 YIYKREYEGWYCPSCERFLPESFVE-GTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLSK 190 (391)
T ss_dssp SEEEEEEEEEEETTTTEEE-GGGET-CEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGG
T ss_pred ceeecccceeEecCcCcccccceee-ccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEehHH
Confidence 9999999999999999999999996 443 45666554 7889999999999
Q ss_pred hHHHhhccCCCCC--ChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhh
Q 003404 131 YADRLLDDLDDLD--WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSL 208 (823)
Q Consensus 131 y~~~l~~~l~~l~--wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~ 208 (823)
|++.|++.|++-. ||+.++.+.++|+
T Consensus 191 ~~~~L~~~l~~~~~~~~~~~~~~~~~~l---------------------------------------------------- 218 (391)
T PF09334_consen 191 FRDQLREWLESNPDFPPPRVREIVRNWL---------------------------------------------------- 218 (391)
T ss_dssp GHHHHHHHHHHSTTSSHHHHHHHHHHHH----------------------------------------------------
T ss_pred hHHHHHHHHhcCCCCCChhHHHHHHHHh----------------------------------------------------
Confidence 9999988765542 5555555544443
Q ss_pred ccccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHH
Q 003404 209 VSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFA 288 (823)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~ 288 (823)
T Consensus 219 -------------------------------------------------------------------------------- 218 (391)
T PF09334_consen 219 -------------------------------------------------------------------------------- 218 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeee
Q 003404 289 LKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR 368 (823)
Q Consensus 289 ~~~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISR 368 (823)
.+ .|+||+|||
T Consensus 219 -----------------------------------------------------------~~----------~L~d~~Is~ 229 (391)
T PF09334_consen 219 -----------------------------------------------------------KE----------GLPDLSISR 229 (391)
T ss_dssp -----------------------------------------------------------HT--------------EE-EC
T ss_pred -----------------------------------------------------------hc----------ccCceeeec
Confidence 22 588999999
Q ss_pred ccccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchh
Q 003404 369 QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW 448 (823)
Q Consensus 369 Qr~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw 448 (823)
.-.||+|+| .+ +..|++||||+.+
T Consensus 230 ~~~WGI~vP----~~----------------------------------------------------~~~~iyVWfdal~ 253 (391)
T PF09334_consen 230 PLDWGIPVP----GD----------------------------------------------------PGQVIYVWFDALI 253 (391)
T ss_dssp TTSSSEEET----TE----------------------------------------------------EEEEE-HHHHHHT
T ss_pred CCCCcceee----cc----------------------------------------------------CCceEEEcchHHH
Confidence 999999999 12 1147889999999
Q ss_pred hhhhhcCCCCChhhhhhhhcccc-C---CceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccce
Q 003404 449 YYLRFMDPKNSKELVDKTKERYW-S---PVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQ 524 (823)
Q Consensus 449 ~yl~~~~p~n~~~~~~~~~~~~w-~---p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~ 524 (823)
.|+....-......-.....++| . +--+++.|+|++.||++ +|+++|+..++ ..| +++++||+++-
T Consensus 254 ~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i---~~pa~l~a~~~---~lP-~~i~~~~~~~~--- 323 (391)
T PF09334_consen 254 GYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAI---YWPAMLLAAGL---PLP-RRIVVHGFLTL--- 323 (391)
T ss_dssp HHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHT---HHHHHHHHCTB-------SEEEEE--EEE---
T ss_pred HHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHH---HhHHHHhcccC---CCC-CEEEeeeeEEE---
Confidence 99874321110000011223555 1 12388999999999976 49999998765 345 89999998863
Q ss_pred eeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchhe
Q 003404 525 YMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLR 604 (823)
Q Consensus 525 ~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lR 604 (823)
+|+|||||+||+|+|.+++++||+|++|
T Consensus 324 ----------------------------------------------------~g~K~SkS~gn~i~~~~~~~~~~~D~~R 351 (391)
T PF09334_consen 324 ----------------------------------------------------DGEKMSKSRGNVIWPDDLLEEYGADALR 351 (391)
T ss_dssp ----------------------------------------------------TTCCEETTTTESSBHHHHHHHH-HHHHH
T ss_pred ----------------------------------------------------CCeeccccCCcccCHHHHHHhCChHHHH
Confidence 3899999999999999999999999999
Q ss_pred eeeeecCCccCCccccccchHHHHH
Q 003404 605 LYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 605 l~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
|||++.+|..+|.+|+++.+...+|
T Consensus 352 ~~L~~~~~~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 352 YYLAREGPEGQDSDFSWEDFIERVN 376 (391)
T ss_dssp HHHHHHSSTTS-EEE-HHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 9999999999999999988876554
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=7.9e-49 Score=427.87 Aligned_cols=280 Identities=28% Similarity=0.443 Sum_probs=234.4
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+|++|.|++|||+||+|||.+|.+.|++|+++++++++.+++++++||+.+| .+++|+++.|...++++|.+|+++|
T Consensus 35 ~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG 112 (319)
T cd00814 35 LRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENG 112 (319)
T ss_pred hCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCC
Confidence 68999999999999999999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC---ChHHHHHHHHhhhc
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD---WPESVKEMQRNWIG 157 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~---wp~~v~~~q~~wig 157 (823)
++|++..+++|||.|+|+|+ +.++.+||||++++|++.|++.++... ||+.++.+.+
T Consensus 113 ~iY~~~~~~~yc~~~~~~l~----------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~---- 172 (319)
T cd00814 113 YIYEGEYEGLYCVSCERFLP----------------EWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVL---- 172 (319)
T ss_pred CEEeeeeeeeECCCCCcEee----------------EEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHH----
Confidence 99999999999999999999 567889999999999999987654431 4444443333
Q ss_pred ccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhh
Q 003404 158 RSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQK 237 (823)
Q Consensus 158 ~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (823)
T Consensus 173 -------------------------------------------------------------------------------- 172 (319)
T cd00814 173 -------------------------------------------------------------------------------- 172 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCCCccccccccccc
Q 003404 238 EKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEG 317 (823)
Q Consensus 238 ~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~~~~~~~~~~~~g 317 (823)
T Consensus 173 -------------------------------------------------------------------------------- 172 (319)
T cd00814 173 -------------------------------------------------------------------------------- 172 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeecc-ccCCcccEEEeCCCCceeeCCCCccC
Q 003404 318 LIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELP 396 (823)
Q Consensus 318 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr-~WG~PIPi~~~~~~~~~~~v~~~~lp 396 (823)
+||.+ .++|||||||+ .||+|+|. +
T Consensus 173 ---------------------------~~l~~----------~l~d~~isR~~~~WGipvp~----~------------- 198 (319)
T cd00814 173 ---------------------------SWLKE----------GLKDLSITRDLFDWGIPVPL----D------------- 198 (319)
T ss_pred ---------------------------HHHhC----------CCcccCCCccCcccCeeCCC----C-------------
Confidence 33332 58899999999 99999994 1
Q ss_pred CcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhhhhhc-CCCCChhhhhhhhccccCCce
Q 003404 397 LTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM-DPKNSKELVDKTKERYWSPVD 475 (823)
Q Consensus 397 v~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~yl~~~-~p~n~~~~~~~~~~~~w~p~D 475 (823)
+.+|++|||||.+.|+... .+..... .+ .......|.+
T Consensus 199 ---------------------------------------~~~~~yvWfda~~~y~~~~~~~~~~~~-~~-~~~~~~~~~~ 237 (319)
T cd00814 199 ---------------------------------------PGKVIYVWFDALIGYISATGYYNEEWG-NS-WWWKDGWPEL 237 (319)
T ss_pred ---------------------------------------CCcEEEEehhhHHHHHHHccccccccc-ch-hhhhcCCCce
Confidence 1147889999999888643 2211110 00 0112235899
Q ss_pred eeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccccchh
Q 003404 476 VYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEE 555 (823)
Q Consensus 476 ~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 555 (823)
+++.|+|++.+|.+ +|+++|..++ ..|++++++|||++.+
T Consensus 238 v~~~G~D~~~fh~~---~~pa~l~~~~----~~~~~~~~~~~~~~~~--------------------------------- 277 (319)
T cd00814 238 VHFIGKDIIRFHAI---YWPAMLLGAG----LPLPTRIVAHGYLTVE--------------------------------- 277 (319)
T ss_pred EEEEeechhhhhHH---HHHHHHHhCC----CCCCcEeeeeeeEEEC---------------------------------
Confidence 99999999999965 6988888776 3567999999998743
Q ss_pred hhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccc
Q 003404 556 KVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTW 619 (823)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~ 619 (823)
|+|||||+||+|+|.+++++||+|++||||++.+|..+|.+|
T Consensus 278 ----------------------g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 278 ----------------------GKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred ----------------------CeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 899999999999999999999999999999999999888776
No 44
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.5e-48 Score=425.20 Aligned_cols=113 Identities=35% Similarity=0.666 Sum_probs=105.8
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCC-------------CChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHH
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGT-------------HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK 67 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~-------------~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~ 67 (823)
|+||+|.|++||||||+|||.+|.+.+. .|++++.++++.++++|++||+++||+++++|++|+|.+
T Consensus 35 ~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~ 114 (312)
T cd00668 35 MRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSK 114 (312)
T ss_pred hCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHH
Confidence 7899999999999999999999999887 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCC
Q 003404 68 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL 142 (823)
Q Consensus 68 ~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l 142 (823)
.++++|.+|+++|+||++..+| +...|||+++++++++|++.++..
T Consensus 115 ~v~~~f~~L~~~G~iY~~~~~v-----------------------------~~~~~~f~~~~~l~~~~~~~~~~~ 160 (312)
T cd00668 115 AVELIFSRLYEKGLIYRGTHPV-----------------------------RITEQWFFDMPKFKEKLLKALRRG 160 (312)
T ss_pred HHHHHHHHHHHCCCEEeeccee-----------------------------EeeeeEEEEcHHHHHHHHHHHhcC
Confidence 9999999999999999999998 567789999999999988765443
No 45
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=100.00 E-value=5.2e-41 Score=330.46 Aligned_cols=183 Identities=50% Similarity=0.902 Sum_probs=141.4
Q ss_pred HhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhh
Q 003404 153 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 232 (823)
Q Consensus 153 ~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (823)
|||||||.|+.|+|++.+. +..|.||||||+||+|++|+|++|+||++..+. +.+..+++|++.+...+..++
T Consensus 1 rNWIGkS~G~~i~F~i~~~-----~~~i~vFTTrpdTifGvtfials~~H~lv~~l~--~~~~~l~~fi~~~~~~~~~~~ 73 (185)
T PF13603_consen 1 RNWIGKSEGAEIDFKIKGS-----NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLA--ENNPELQEFIEKCKKIKNSER 73 (185)
T ss_dssp HHHH-EEEEEEEEEEBTTS-----SCEEEEEES-GGGGGG--EEEEETTSCHHHHCT--TTHHHHHHHHHHHHTS-HHHH
T ss_pred CCCcCCcccEEEEEEecCC-----CCEEEEEECCcchhhCceEEEECCCCHHHHhhh--hhhhhHHHHHHHHhcCCHhHh
Confidence 7999999999999999642 368999999999999999999999999998873 456788999999988887777
Q ss_pred hhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHHcCCceeeeccCCCCC--Ccccc
Q 003404 233 TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES--SSQSE 310 (823)
Q Consensus 233 ~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~~~l~~~~vv~~~~~~--~~~~~ 310 (823)
......|.|.++|++++||++++++|||+++||+++|||||||+|||||+|||+||++||||+..||.+.+.. .....
T Consensus 74 ~~~~~~k~Gv~tg~~aihP~t~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~ 153 (185)
T PF13603_consen 74 NKDFKEKEGVFTGLYAIHPLTGKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQ 153 (185)
T ss_dssp HHCSSS--EEEEEEEEE-TTTS-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTS
T ss_pred hhhccccccCcCCCEEECCCCCCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccc
Confidence 6666778999999999999999999999999999999999999999999999999999999999999887543 33356
Q ss_pred ccccccceEecccCcccccccCCCCHHHHHHHHHHHHH
Q 003404 311 KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAE 348 (823)
Q Consensus 311 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~ 348 (823)
.+|+++|+|+||.. |+||+.++|+++++++|+
T Consensus 154 ~~~~~~G~l~nS~~------f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 154 EAYTGDGILINSGE------FNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp S---S--EE-SSGG------GTTSBHHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCC------CCCCCHHHHHHHHHHHhC
Confidence 78999999999986 999999999999999885
No 46
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-39 Score=336.55 Aligned_cols=409 Identities=21% Similarity=0.353 Sum_probs=299.9
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
.+|++.+|++|.|+.|..+|.+|++.|..|+++++++...++..+.-++|.|| .+-+|+.|.....+|.+|.+|+++|
T Consensus 50 ~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng 127 (567)
T KOG1247|consen 50 LRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNG 127 (567)
T ss_pred CCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcC
Confidence 47999999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred cEEEcceeeeccCCCCcccCccccccCccccCCC------------------------------CeEEeccchhhhhHhh
Q 003404 81 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGH------------------------------PVIRKPMRQWMLKITE 130 (823)
Q Consensus 81 liy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~------------------------------~v~~~~~~qw~~~it~ 130 (823)
+.....-.|.+|+.|++.||+..|+ |.|..||+ .++.|...+.||.+.+
T Consensus 128 ~~se~tv~qLyC~vc~~fladr~ve-g~cp~C~yd~ARGDqcd~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~k 206 (567)
T KOG1247|consen 128 YLSEQTVKQLYCEVCDTFLADRFVE-GKCPFCGYDDARGDQCDKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDK 206 (567)
T ss_pred CcccceeeeEEehhhcccccchhhh-ccCCCCCCccccchhhhhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHH
Confidence 9999999999999999999999997 55655554 3344444454544444
Q ss_pred hHHHhhccCCCCCChHHHHHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCCcChhhcccEEEECCCCcchhhhcc
Q 003404 131 YADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVS 210 (823)
Q Consensus 131 y~~~l~~~l~~l~wp~~v~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~ 210 (823)
..++|.+
T Consensus 207 l~~~lee------------------------------------------------------------------------- 213 (567)
T KOG1247|consen 207 LEPRLEE------------------------------------------------------------------------- 213 (567)
T ss_pred hHHHHHH-------------------------------------------------------------------------
Confidence 4444332
Q ss_pred ccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCCeecEEEeCccccCCCCceEEecCCCChhhHHHHHH
Q 003404 211 TTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK 290 (823)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~~ 290 (823)
++....
T Consensus 214 ---------~~~~~~----------------------------------------------------------------- 219 (567)
T KOG1247|consen 214 ---------WLRRTL----------------------------------------------------------------- 219 (567)
T ss_pred ---------HHHhcc-----------------------------------------------------------------
Confidence 221100
Q ss_pred cCCceeeeccCCCCCCccccccccccceEecccCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCceeeeecc
Q 003404 291 FDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR 370 (823)
Q Consensus 291 ~~l~~~~vv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~v~~~l~~~~~~~~~~~~~l~DW~ISRQr 370 (823)
..|.-...|..-...||.. .|+..||+|..
T Consensus 220 ----------------------------------------~~~~WS~Na~~it~sWlk~----------gl~pRCiTRDL 249 (567)
T KOG1247|consen 220 ----------------------------------------VEGDWSQNAQNITRSWLKD----------GLKPRCITRDL 249 (567)
T ss_pred ----------------------------------------ccCCCccchHHHHHHHHHc----------ccccccccccc
Confidence 0011111233344567765 78999999999
Q ss_pred ccCCcccEEEeCCCCceeeCCCCccCCcCCcccccCCCCCCCCCCcCCccceeecccCCCCCccccCCCccccccchhhh
Q 003404 371 YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYY 450 (823)
Q Consensus 371 ~WG~PIPi~~~~~~~~~~~v~~~~lpv~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~dt~d~WfdSsw~y 450 (823)
-||+|+|. +. + +..+++||||+...|
T Consensus 250 kWGtpVPl---e~---------------------f------------------------------k~KVfYVWFDA~IGY 275 (567)
T KOG1247|consen 250 KWGTPVPL---EK---------------------F------------------------------KDKVFYVWFDAPIGY 275 (567)
T ss_pred ccCCCcCh---hh---------------------h------------------------------cccEEEEEEcCcceE
Confidence 99999995 11 0 225899999999999
Q ss_pred hhhcCCCCChhhhhhhhccccCC---ceee-ecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceee
Q 003404 451 LRFMDPKNSKELVDKTKERYWSP---VDVY-VGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYM 526 (823)
Q Consensus 451 l~~~~p~n~~~~~~~~~~~~w~p---~D~~-v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~ 526 (823)
++...- .. .+..++|.. |++| +.|+|...||- .++++..+.+.+-|. ++.| +
T Consensus 276 lsit~~-----yt-~ew~kWwknpE~v~LyqFmgKDNVpFHt--------viFP~s~lgt~en~t-~v~~-l-------- 331 (567)
T KOG1247|consen 276 LSITKN-----YT-DEWEKWWKNPENVELYQFMGKDNVPFHT--------VIFPCSQLGTEENYT-VVHH-L-------- 331 (567)
T ss_pred EEeehh-----hh-HHHHHHhcCHhhhhHHHHhccCCCccee--------eecchhhhcCCCCch-hhee-e--------
Confidence 876421 11 233345542 5566 68888865552 222333322333321 1111 1
Q ss_pred EEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHH-hCcchhee
Q 003404 527 VCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRL 605 (823)
Q Consensus 527 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl 605 (823)
+..+++..+ ..|+|||+|-+|--.++.+. .++++.||
T Consensus 332 ---------------------------------~aTeYLnyE---------~gKFSKSrgvGvFG~~aqd~gi~~~vWRy 369 (567)
T KOG1247|consen 332 ---------------------------------SATEYLNYE---------DGKFSKSRGVGVFGNDAQDTGIPASVWRY 369 (567)
T ss_pred ---------------------------------chhhhhccc---------cCcccccccccccccccccCCCCHHHHHH
Confidence 112333333 57999999999999888874 78999999
Q ss_pred eeeecCCccCCccccccchH---------HHHHHHHHHHHHHHcCCCCCCCCCCCccCC--CCcchHHHHHHHHHHHHHH
Q 003404 606 YEMFMGPFRDSKTWNTSGIE---------GVHRFLGRMWRLIVGSSLPDGTFKGGTVVN--DEEPTLEQLCTLHKCIAKV 674 (823)
Q Consensus 606 ~ll~~~~~~~d~~~s~~~i~---------~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~l~~~~~~v 674 (823)
||++..|..+|..|+++.+. ...||++|+..|+... | .+.++. ....+..++..++++..+.
T Consensus 370 YLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~------~-~g~Vp~~~~~~~~~~~~~dv~~~~~~y 442 (567)
T KOG1247|consen 370 YLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAK------Y-NGVVPEMELTSGDKKLLEDVNELLAKY 442 (567)
T ss_pred HHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh------h-CCcccceeecCChHHHHHHHHHHHHHH
Confidence 99999999999999876553 4567888888877422 1 222222 2334777899999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHhcccc--------------------chHHHHHHHHHHhCccchhhHHHHHHHcCCCC
Q 003404 675 TEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSN 734 (823)
Q Consensus 675 ~~~~e~~~f~~ai~~l~~~~~~~~~~~~--------------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~~~ 734 (823)
.++||.-+.+.|++.+|++....|.+.. ....++..++.||+|+||.++.+|..+|+.+.
T Consensus 443 ~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp~ 522 (567)
T KOG1247|consen 443 VAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLPE 522 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCCcc
Confidence 9999999999999999999988776421 12367888899999999999999999998765
Q ss_pred Cc
Q 003404 735 SL 736 (823)
Q Consensus 735 sv 736 (823)
..
T Consensus 523 ~~ 524 (567)
T KOG1247|consen 523 TL 524 (567)
T ss_pred cc
Confidence 43
No 47
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.97 E-value=1.1e-30 Score=297.54 Aligned_cols=155 Identities=18% Similarity=0.281 Sum_probs=124.7
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccccccc
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEYEQES 551 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 551 (823)
.|+|+|.||+|++. .||.....++......||.+++.|+-++.
T Consensus 219 ~~~Dih~gG~Dlif-------pHh~neiaqs~a~~g~p~~~~w~H~g~v~------------------------------ 261 (463)
T PRK00260 219 ETFDIHGGGADLIF-------PHHENEIAQSEAATGKPFANYWMHNGFVT------------------------------ 261 (463)
T ss_pred CCcceecCccccCC-------CchHhHHHHHHHhcCCCcceEEEEccEEc------------------------------
Confidence 47999999999973 34444444433222389999998853331
Q ss_pred cchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHH
Q 003404 552 IPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFL 631 (823)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l 631 (823)
++|+|||||+||+|+|.+++++||+|++|||+++ ++++++++|+++.+..+.+++
T Consensus 262 ------------------------~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~a~~~~ 316 (463)
T PRK00260 262 ------------------------VNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLS-AHYRSPLNFSEEALEQAKKAL 316 (463)
T ss_pred ------------------------cCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHh-CCCCCCCccCHHHHHHHHHHH
Confidence 1489999999999999999999999999999995 678999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhccc
Q 003404 632 GRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 632 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e-~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
+++++++.... ....+.++..+++.++.++.++|+ +|+++.|++.|++|++.+|.+.
T Consensus 317 ~rl~~~~~~~~-------------~~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~ 374 (463)
T PRK00260 317 ERLYNALAETA-------------LGEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRAL 374 (463)
T ss_pred HHHHHHHHHhh-------------hccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 99999874321 012356777888999999999995 8999999999999999988653
No 48
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.95 E-value=3.3e-28 Score=284.72 Aligned_cols=164 Identities=15% Similarity=0.208 Sum_probs=124.0
Q ss_pred CCceeeecChhhHHHHHHHHHHHH-HHHHHh-cCccCCCcccccccc-ceEeccceeeEEecCCCccccCCCCCcccccc
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWH-KVLYDI-GVVSTKEPFKCVINQ-GIILGEMQYMVCKDVDGSYISADSTDTLGEYE 548 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~-~~L~~~-~~~~~~~Pf~~l~~~-G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 548 (823)
.|+|+|.||.|++ |-| -....+ ....+..||.+.+.| |||+-
T Consensus 267 ~~~DIh~gG~DL~--------FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i--------------------------- 311 (651)
T PTZ00399 267 DPIDIHSGGIDLK--------FPHHDNELAQSEAYFDKHQWVNYFLHSGHLHI--------------------------- 311 (651)
T ss_pred CcceeeccCCCCC--------CCcchhHHHHHHHhhCCCCCCcEEEEEEEEEe---------------------------
Confidence 5899999999994 444 333333 344455699999999 88752
Q ss_pred ccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHH
Q 003404 549 QESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH 628 (823)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~ 628 (823)
+|+|||||+||+|+|.+++++||+|++|||+|+ .+++++++|+++.+..+.
T Consensus 312 ----------------------------~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs-~~~~~dldFS~e~l~~a~ 362 (651)
T PTZ00399 312 ----------------------------KGLKMSKSLKNFITIRQALSKYTARQIRLLFLL-HKWDKPMNYSDESMDEAI 362 (651)
T ss_pred ----------------------------ccchhhhcCCCcccHHHHHHHcChHHHHHHHHh-cCCCCCCccCHHHHHHHH
Confidence 389999999999999999999999999999995 589999999999998887
Q ss_pred HHHHHHHHHHHcC--CCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHhccc
Q 003404 629 RFLGRMWRLIVGS--SLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEI-EGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 629 ~~l~r~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~-e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
+..+++.+++... ......... .......+.+++..+..+...|.++| ++|+++.|++.|++|++.+|.+.
T Consensus 363 ~~~~~l~n~~~rl~s~l~~~~~~~--~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~yi 436 (651)
T PTZ00399 363 EKDKVFFNFFANVKIKLRESELTS--PQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNTYL 436 (651)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 7666655554211 000000000 00112346678888999999999999 77999999999999999988764
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=1.9e-27 Score=260.37 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=84.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcC-cccCCCeeecCChhHHHHHHHHHHHHHHc
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF-SYDWNREISTIEPAYYKWTQWIFLQLLKR 79 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~-~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~ 79 (823)
++||+|.|++|.|.||.||+++|.+.|++|++++.++++.+.+.|++||| +.| .+.+|+++ ...++.++.+|.++
T Consensus 43 ~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~~--~~~raTe~--i~~~~~~i~~L~~k 118 (384)
T PRK12418 43 DAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEALRVLPPR--DYVGAVES--IPEVVELVEKLLAS 118 (384)
T ss_pred HcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC--ccccCCCC--HHHHHHHHHHHHHC
Confidence 47999999999999999999999999999999999999999999999997 666 78888875 88899999999999
Q ss_pred CcEEEcce----eeeccCCC
Q 003404 80 GLAYQAEV----PVNWCPAL 95 (823)
Q Consensus 80 gliy~~~~----~v~w~p~~ 95 (823)
|++|.+.. -|+++...
T Consensus 119 G~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 119 GAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred CCEEEeCCCCCccEEEecCc
Confidence 99999988 78888754
No 50
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.95 E-value=2.1e-27 Score=269.89 Aligned_cols=93 Identities=17% Similarity=0.067 Sum_probs=84.9
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
|+||+|.|++|+|.||.||+.+|.+.|++|++++.++++.+++.+++|||++|+-.. +|+ +|...++++|.+|.++|
T Consensus 55 ~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~-raT--~hi~~i~~~i~~L~ekG 131 (465)
T TIGR00435 55 YLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPPDLEP-RAT--EHIDEIIEFIEQLIEKG 131 (465)
T ss_pred HcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCcCCc-ccc--ccHHHHHHHHHHHHHCC
Confidence 579999999999999999999999999999999999999999999999999995222 333 78899999999999999
Q ss_pred cEEEcc-eeeeccCCCC
Q 003404 81 LAYQAE-VPVNWCPALG 96 (823)
Q Consensus 81 liy~~~-~~v~w~p~~~ 96 (823)
++|.+. ..|+||+.+-
T Consensus 132 ~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 132 YAYVSDNGDVYFDVSKF 148 (465)
T ss_pred CEEEecCCcEEEecccc
Confidence 999998 9999998774
No 51
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=8e-26 Score=248.53 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=82.1
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCc-ccCCCeeecCChhHHHHHHHHHHHHHHc
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKR 79 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~-~Dw~~~~~T~~p~y~~~~~~~F~~L~~~ 79 (823)
++||+|.|++|.|+||.||+++|.+.|++|++++.++++.+++.|++||+. +| .+.+|++. ...++.++.+|.++
T Consensus 70 ~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~k 145 (411)
T TIGR03447 70 DAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAA 145 (411)
T ss_pred hcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHC
Confidence 479999999999999999999999999999999999999999999999986 65 67888877 78899999999999
Q ss_pred CcEEEcce----eeeccCC
Q 003404 80 GLAYQAEV----PVNWCPA 94 (823)
Q Consensus 80 gliy~~~~----~v~w~p~ 94 (823)
|+||.+.- -|+++..
T Consensus 146 G~aY~~~~~~~~~VYFdv~ 164 (411)
T TIGR03447 146 GAAYEVEGPEYPDVYFSIE 164 (411)
T ss_pred CCEEecCCCCcCcEEEecc
Confidence 99998875 5887764
No 52
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=2e-26 Score=262.38 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=85.6
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
++||+|.|++|.|.||-+|.++|.+.|++|++++.++++.|.+.+++|||..+ .+.|...+|...++.++.+|.++|
T Consensus 282 ~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p---~~~praTeHI~~ii~lI~~LidkG 358 (699)
T PRK14535 282 ECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRP---DIEPKATENIPQMIAMIETLIQNG 358 (699)
T ss_pred HcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC---cEeeCccchHHHHHHHHHHHHHCC
Confidence 47999999999999999999999999999999999999999999999999998 457778899999999999999999
Q ss_pred cEEEcc-eeeeccCCC
Q 003404 81 LAYQAE-VPVNWCPAL 95 (823)
Q Consensus 81 liy~~~-~~v~w~p~~ 95 (823)
++|.+. .-|+||..+
T Consensus 359 ~AYe~~~gsVYFdV~~ 374 (699)
T PRK14535 359 KAYPAANGDVYYAVRE 374 (699)
T ss_pred CEEEeCCCCEEEeccc
Confidence 999874 479999864
No 53
>PLN02946 cysteine-tRNA ligase
Probab=99.94 E-value=3e-26 Score=260.34 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=87.3
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
+.||+|.|++|.|.||.+|..+|.+.|++|++++.++++.|.+.|++||+. + ..+.|...+|...++.++.+|.++|
T Consensus 114 ~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG 190 (557)
T PLN02946 114 HLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNG 190 (557)
T ss_pred hcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCC
Confidence 479999999999999999999999999999999999999999999999998 3 5889999999999999999999999
Q ss_pred cEEEcceeeeccCCC
Q 003404 81 LAYQAEVPVNWCPAL 95 (823)
Q Consensus 81 liy~~~~~v~w~p~~ 95 (823)
++|.+...|++|...
T Consensus 191 ~aY~~~g~VYFdv~~ 205 (557)
T PLN02946 191 CAYRVDGDVYFSVDK 205 (557)
T ss_pred CEEEECCeEEEecCc
Confidence 999999999999753
No 54
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.93 E-value=5.9e-25 Score=247.57 Aligned_cols=91 Identities=20% Similarity=0.087 Sum_probs=85.4
Q ss_pred CCCCcccccc----------cCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHH
Q 003404 1 MQGYNVLHPM----------GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 70 (823)
Q Consensus 1 m~G~~V~~~~----------GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~ 70 (823)
++||+|.|++ |.|+||-+|.++|.+.|++|++++.++++.+++.|++|||..+ .+.|..++|...++
T Consensus 57 ~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~---~~~~rat~hi~~ii 133 (490)
T PRK14536 57 FLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERP---SIVCNATEHIQDMI 133 (490)
T ss_pred hcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC---ceecCcccHHHHHH
Confidence 4799999997 9999999999999999999999999999999999999999997 34477799999999
Q ss_pred HHHHHHHHcCcEEEcceeeeccCC
Q 003404 71 WIFLQLLKRGLAYQAEVPVNWCPA 94 (823)
Q Consensus 71 ~~F~~L~~~gliy~~~~~v~w~p~ 94 (823)
.++.+|.++|++|.+...|+||+.
T Consensus 134 ~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 134 ALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred HHHHHHHHCCCEEEECCeEEEeCC
Confidence 999999999999999999999984
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2.6e-23 Score=233.04 Aligned_cols=92 Identities=18% Similarity=0.101 Sum_probs=85.8
Q ss_pred CCCCcccc---------cccC-CccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHH
Q 003404 1 MQGYNVLH---------PMGW-DAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 70 (823)
Q Consensus 1 m~G~~V~~---------~~Gw-D~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~ 70 (823)
++||+|.| .+|. |+||-+|.++|.+.|++|++++.++++.+.+.+++||+..| ..+.| .++|...++
T Consensus 55 ~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i 131 (481)
T PRK14534 55 LLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMI 131 (481)
T ss_pred HcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHH
Confidence 47999999 7999 88889999999999999999999999999999999999999 66666 689999999
Q ss_pred HHHHHHHHcCcEEEcceeeeccCCC
Q 003404 71 WIFLQLLKRGLAYQAEVPVNWCPAL 95 (823)
Q Consensus 71 ~~F~~L~~~gliy~~~~~v~w~p~~ 95 (823)
.++.+|.++|++|.....|++|+.+
T Consensus 132 ~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 132 EVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred HHHHHHHHCCCEEEECCeEEEeccc
Confidence 9999999999999999999999876
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.83 E-value=9.8e-21 Score=193.30 Aligned_cols=58 Identities=19% Similarity=0.031 Sum_probs=56.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcc-cCCCeeec
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY-DWNREIST 60 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~-Dw~~~~~T 60 (823)
|+|++|+|++|+|+||+||+++|++.|++|++++.++.+.++++|++||+++ | .+.+|
T Consensus 54 ~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~~d--~~~rt 112 (213)
T cd00672 54 DLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPD--VVPRV 112 (213)
T ss_pred hcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC--cceee
Confidence 6899999999999999999999999999999999999999999999999999 6 88888
No 57
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-19 Score=199.06 Aligned_cols=150 Identities=20% Similarity=0.339 Sum_probs=115.6
Q ss_pred CceeeecChhhHHHHHHHHHHHHHHHHHhc-CccCCCcccccccc-ceEeccceeeEEecCCCccccCCCCCcccccccc
Q 003404 473 PVDVYVGGAEHAVLHLLYARFWHKVLYDIG-VVSTKEPFKCVINQ-GIILGEMQYMVCKDVDGSYISADSTDTLGEYEQE 550 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~-~~~~~~Pf~~l~~~-G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 550 (823)
..|+|.||.|++ +..|-.-.++. ...+..||.+.+.| |||+
T Consensus 221 ~~DIHgGG~DLi-------FPHHENEiAQsea~~g~~~~a~yWmH~G~l~------------------------------ 263 (464)
T COG0215 221 TFDIHGGGSDLI-------FPHHENEIAQSEAATGVKPFAKYWMHNGFLN------------------------------ 263 (464)
T ss_pred CcceecCccccc-------CCCcccHHHHHHhhhCCCcceeEeEEcceee------------------------------
Confidence 589999999996 23344444444 44455899888877 5554
Q ss_pred ccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHH
Q 003404 551 SIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF 630 (823)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~ 630 (823)
++|+|||||+||+++..+++++|++.+|||+|+ +++++.+++||++.++.+.+.
T Consensus 264 -------------------------i~geKMSKSLGNfiti~d~l~~~~p~~lR~~ll-s~HYR~pl~fsee~L~~A~~~ 317 (464)
T COG0215 264 -------------------------IDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLL-SSHYRSPLDFSEELLEEAKKA 317 (464)
T ss_pred -------------------------ecCcCcccccCCeeEHHHHHhhcCHHHHHHHHH-HHHhCCccccCHHHHHHHHHH
Confidence 349999999999999999999999999999999 688999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhc
Q 003404 631 LGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYK 699 (823)
Q Consensus 631 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e-~~~f~~ai~~l~~~~~~~~~ 699 (823)
+.|+.+++.... .... .... ....+...++.++|+ +|++..|++.|.+++...+.
T Consensus 318 l~rl~~~~~~~~----~~~~-----~~~~-----~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~ 373 (464)
T COG0215 318 LERLYNALRRLR----DLAG-----DAEL-----ADLKEFEARFREALDDDFNTPKALAVLFELAKEINR 373 (464)
T ss_pred HHHHHHHHHHHH----hhcc-----cccc-----chhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh
Confidence 999888774321 0000 0000 045667777899995 59999999999999998754
No 58
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.69 E-value=1.2e-16 Score=173.88 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCCCcccccccCCcc------------------chHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCC
Q 003404 1 MQGYNVLHPMGWDAF------------------GLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIE 62 (823)
Q Consensus 1 m~G~~V~~~~GwD~h------------------GlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~ 62 (823)
|+|++|.|++|||+| |.|+...+...|.++ .++..+.+.+++.|++||+++| ...+|-.
T Consensus 53 ~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~-~~~d~~~~~f~~~l~~lgi~~d--~~~~T~~ 129 (353)
T cd00674 53 DLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCE-SYAEHFERPFEESLEKLGIEVE--FISQSQM 129 (353)
T ss_pred HcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCH-HHHHHHHHHHHHHHHHcCCeee--eeecCCc
Confidence 689999999999999 777777777778766 9999999999999999999999 3445555
Q ss_pred hhHHHHHHHHHHHHHHcCcEE
Q 003404 63 PAYYKWTQWIFLQLLKRGLAY 83 (823)
Q Consensus 63 p~y~~~~~~~F~~L~~~gliy 83 (823)
...-+..+.++..|.+++.|.
T Consensus 130 y~~g~~~~~i~~~L~~~~~I~ 150 (353)
T cd00674 130 YKSGLYDENILIALEKRDEIM 150 (353)
T ss_pred hhhchHHHHHHHHHHHCChHH
Confidence 666689999999999988763
No 59
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.69 E-value=3.5e-17 Score=171.54 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=74.6
Q ss_pred CCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCc
Q 003404 2 QGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGL 81 (823)
Q Consensus 2 ~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gl 81 (823)
.||+|.|+++.-.--=+|-.+|.+.|+++.+++.++++.+.+.|++||+.-. ...+---+|......+-.+|.++|+
T Consensus 43 ~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~ 119 (300)
T PF01406_consen 43 LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNVLPP---DHYPRATEHIPEIIELIEKLIDKGH 119 (300)
T ss_dssp TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-------SEEEEGGGGHHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCCCCC---ccccchhccHHHHHHHHHHHHHCCC
Confidence 6999999999988889999999999999999999999999999999999875 3445556788889999999999999
Q ss_pred EEEcc-eeeeccCC
Q 003404 82 AYQAE-VPVNWCPA 94 (823)
Q Consensus 82 iy~~~-~~v~w~p~ 94 (823)
+|... .-|+++..
T Consensus 120 AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 120 AYESEDGSVYFDVS 133 (300)
T ss_dssp EEEETTSEEEE-CC
T ss_pred eEEcCCCcEEEeec
Confidence 99999 99999975
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=1.6e-15 Score=175.76 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=74.2
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
+.||+|.++.|+|.+|.++...|.+.+..++.++..+++.+++.+++||+.+| .+++|.+..|...+++++.+|.++|
T Consensus 146 ~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G 223 (507)
T PRK01611 146 FAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKG 223 (507)
T ss_pred HcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCC
Confidence 47999999999999999999988887777888999999999999999999998 6677787777788999999999999
Q ss_pred cEE
Q 003404 81 LAY 83 (823)
Q Consensus 81 liy 83 (823)
++|
T Consensus 224 ~~y 226 (507)
T PRK01611 224 LLY 226 (507)
T ss_pred CEE
Confidence 999
No 61
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.56 E-value=9.7e-15 Score=168.04 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=60.8
Q ss_pred CCCCcccccccCCccc--------hHH-HHHHHHhCCC----------ChHHHHHHHHHHHHHHHHhcCcccCCCeeecC
Q 003404 1 MQGYNVLHPMGWDAFG--------LPA-EQYAIETGTH----------PKITTLRNINRFRTQLKSLGFSYDWNREISTI 61 (823)
Q Consensus 1 m~G~~V~~~~GwD~hG--------lPi-E~~a~~~g~~----------p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~ 61 (823)
++|++|.|++|+|.|| +|. |..|...|.+ |+.++..+.+.+++.|++||+.+| .++|+
T Consensus 57 ~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t 133 (510)
T PRK00750 57 DLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGCHESYAEHFNAPLREFLDRFGIEYE---FISAT 133 (510)
T ss_pred HcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCCchHHHHHHHHHHHHHHHHcCCceE---EEehh
Confidence 4699999999999997 776 3455556654 689999999999999999999999 44443
Q ss_pred C-hhHHHHHHHHHHHHHHcCcEE
Q 003404 62 E-PAYYKWTQWIFLQLLKRGLAY 83 (823)
Q Consensus 62 ~-p~y~~~~~~~F~~L~~~gliy 83 (823)
+ ...-+..+.++..|.+++.|.
T Consensus 134 ~~y~~g~~~~~i~~~l~~~~~i~ 156 (510)
T PRK00750 134 ECYKSGRYDEAILTALENRDEIM 156 (510)
T ss_pred hhhccCchHHHHHHHHHhHHHHH
Confidence 3 344466777777777766653
No 62
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.54 E-value=2.1e-14 Score=144.53 Aligned_cols=129 Identities=24% Similarity=0.412 Sum_probs=98.6
Q ss_pred ccccchHHHHH-HHHHHHHH---HHcCCCCCCCCCCCc--c--CCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 003404 619 WNTSGIEGVHR-FLGRMWRL---IVGSSLPDGTFKGGT--V--VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM 690 (823)
Q Consensus 619 ~s~~~i~~~~~-~l~r~~~~---~~~~~~~~~~~~~~~--~--~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l 690 (823)
||+++++++.| |++++||. +++.. ....+.+.. . ......|+|+++++++++++++++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~-~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYA-NLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 57788999988 99999984 43310 001111110 0 1234578999999999999999999999999999999
Q ss_pred HHHHHHHhcccc---------------------chHHHHHHHHHHhCccchhhHHHHHHHcCC-----CCCccccCCCCC
Q 003404 691 MEFINAAYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH-----SNSLAYESFPKA 744 (823)
Q Consensus 691 ~~~~~~~~~~~~---------------------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~-----~~sv~~~~WP~~ 744 (823)
|.|++...+|+. ....+++.++++|+|||||+|||+|+.++. .++|+.++||++
T Consensus 80 ~~f~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~~wP~~ 159 (183)
T cd07961 80 LEFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEV 159 (183)
T ss_pred HHHHHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeeecCCCC
Confidence 999987655321 234789999999999999999999999975 368999999997
Q ss_pred Cccc
Q 003404 745 NPDY 748 (823)
Q Consensus 745 ~e~~ 748 (823)
++.+
T Consensus 160 ~~~~ 163 (183)
T cd07961 160 DESL 163 (183)
T ss_pred cccc
Confidence 6543
No 63
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.1e-14 Score=157.69 Aligned_cols=190 Identities=16% Similarity=0.131 Sum_probs=136.5
Q ss_pred ccccchhhhhhhcCCCCChhhhhhhhccccCCceeeecChhhHHHHHHHHHHHHH-H-HHHhcCccCCCcccccccc-ce
Q 003404 442 QWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHK-V-LYDIGVVSTKEPFKCVINQ-GI 518 (823)
Q Consensus 442 ~WfdSsw~yl~~~~p~n~~~~~~~~~~~~w~p~D~~v~G~D~~~~Hlly~rfw~~-~-L~~~~~~~~~~Pf~~l~~~-G~ 518 (823)
.|.+|.|.--|-+|.-....|-.. -.-...|+|-||.|. +|-|+ . +..+.+....+++-+.+.| |+
T Consensus 230 P~WeSPWG~GRPGWHIECSaMas~---~lG~~lDIH~GG~DL--------~FPHHeNEiAQ~eA~~~~~~wVnYflHtGh 298 (586)
T KOG2007|consen 230 PSWESPWGKGRPGWHIECSAMASA---ILGSQLDIHGGGIDL--------AFPHHENEIAQSEAAFDDSQWVNYFLHTGH 298 (586)
T ss_pred CCCCCCCCCCCCCceeeeHHHHHH---hhccccceecCcccc--------cCCCcccHHHHHHHHhcCCccceeEEEcCe
Confidence 466889988888887776555321 112458999999999 45544 3 4444444445667777666 33
Q ss_pred EeccceeeEEecCCCccccCCCCCccccccccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHHh
Q 003404 519 ILGEMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEY 598 (823)
Q Consensus 519 vl~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~y 598 (823)
+ +++|+|||||++|+|+..+++++|
T Consensus 299 L-------------------------------------------------------~i~g~KMSKSLkNFiTIke~Lk~~ 323 (586)
T KOG2007|consen 299 L-------------------------------------------------------TINGEKMSKSLKNFITIKEALKKY 323 (586)
T ss_pred e-------------------------------------------------------eeccchhhhhhccceeHHHHHHhc
Confidence 3 345999999999999999999999
Q ss_pred CcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHH
Q 003404 599 GADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEI 678 (823)
Q Consensus 599 GaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~ 678 (823)
.|++||+++| ...++++++|+++.+..+..+...+.+|+....-. .+...+ .......+.+++.++..+..+|..++
T Consensus 324 sp~qLRl~fl-~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al-~~~~~~-~~~~~~~e~~l~~~~~~t~~~vh~al 400 (586)
T KOG2007|consen 324 SPRQLRLAFL-LHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKAL-LRGAKP-FEKLSEKEAELLEDFGKTQTAVHAAL 400 (586)
T ss_pred CHHHHHHHHH-HHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhccch-hhccChHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999 67799999999998888777666665555211000 000000 01223456678888999999999988
Q ss_pred -hcCcHHHHHHHHHHHHHHHhcc
Q 003404 679 -EGTRFNTGISAMMEFINAAYKW 700 (823)
Q Consensus 679 -e~~~f~~ai~~l~~~~~~~~~~ 700 (823)
++++...++..+.++++..|.+
T Consensus 401 ~d~~dT~~v~~~~~~lvs~~N~~ 423 (586)
T KOG2007|consen 401 CDNFDTPRVMEAIRELVSQGNAY 423 (586)
T ss_pred HhccccHHHHHHHHHHHhhhhHH
Confidence 7899999999999999988865
No 64
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.43 E-value=5.3e-13 Score=123.87 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=85.8
Q ss_pred ccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHH
Q 003404 619 WNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM-MEFINAA 697 (823)
Q Consensus 619 ~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l-~~~~~~~ 697 (823)
|+++.++++.|+|+|+|+++..... ... + . ......|+++++++++++++++++|++|+|++|++++ |+|.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~--~~~-~-~-~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE--TEG-E-L-EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh--ccC-C-c-cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6788899999999999999854210 000 1 0 1123468899999999999999999999999999997 9999877
Q ss_pred hcccc---------chHHHHHHHHHHhCccchhhHHHHHHHc
Q 003404 698 YKWEK---------HPRKIIEPFILLLAPYAPHMSEELWFRL 730 (823)
Q Consensus 698 ~~~~~---------~~~~~l~~l~~lLaPi~P~~aEelw~~L 730 (823)
+.+.. ...++++.++++|+||+||+|||+|+.|
T Consensus 76 ~~Y~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 76 DWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 75421 3468999999999999999999999875
No 65
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.41 E-value=9.8e-13 Score=121.94 Aligned_cols=110 Identities=47% Similarity=0.785 Sum_probs=87.5
Q ss_pred ccccchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHh
Q 003404 619 WNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAY 698 (823)
Q Consensus 619 ~s~~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~ 698 (823)
|+++.+.++.||++|+|+++..... ..............|.+++.+++++++++.++|++|+|++|++.+++|++.+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAE--ALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHh--hccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 6788999999999999999853210 00000000012345788999999999999999999999999999999999999
Q ss_pred cccc-------chHHHHHHHHHHhCccchhhHHHHHHHc
Q 003404 699 KWEK-------HPRKIIEPFILLLAPYAPHMSEELWFRL 730 (823)
Q Consensus 699 ~~~~-------~~~~~l~~l~~lLaPi~P~~aEelw~~L 730 (823)
++.. ...++++.++++|+|||||+||++|+.|
T Consensus 79 ~~~~~~~p~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 79 KYKKKDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HhhccccchHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 8743 3458899999999999999999999875
No 66
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.39 E-value=2e-12 Score=129.82 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=92.2
Q ss_pred cccchHHHHHHHHHHHH---HHHcCCCCCCCCCCCc----cCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 003404 620 NTSGIEGVHRFLGRMWR---LIVGSSLPDGTFKGGT----VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMME 692 (823)
Q Consensus 620 s~~~i~~~~~~l~r~~~---~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~ 692 (823)
+.+.++++.++++++|| |+.+... .+.... .......|+++++++++++++++++|++|+|+.|++.+|+
T Consensus 2 ~~~~~~~~~~~~~Kl~N~~rf~~~~~~---~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~ 78 (180)
T cd07960 2 SDEILKQVAEAYRKIRNTFRFLLGNLN---DFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNN 78 (180)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccc---CCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556666666666665 5554321 111111 0122456889999999999999999999999999999999
Q ss_pred HHH-HHhcc--------c------c--------chHHHHHHHHHHhCccchhhHHHHHHHcCC---CCCccccCCCCCCc
Q 003404 693 FIN-AAYKW--------E------K--------HPRKIIEPFILLLAPYAPHMSEELWFRLGH---SNSLAYESFPKANP 746 (823)
Q Consensus 693 ~~~-~~~~~--------~------~--------~~~~~l~~l~~lLaPi~P~~aEelw~~L~~---~~sv~~~~WP~~~e 746 (823)
|++ .+.+| . . ....+++.+++||+|||||+|||+|+.|+. ..+++.++||++++
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~~~~wP~~~~ 158 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPE 158 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCeeccCCCCCcc
Confidence 996 34332 1 0 234789999999999999999999999986 36899999999876
Q ss_pred cc
Q 003404 747 DY 748 (823)
Q Consensus 747 ~~ 748 (823)
.+
T Consensus 159 ~~ 160 (180)
T cd07960 159 EW 160 (180)
T ss_pred cc
Confidence 44
No 67
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.21 E-value=5e-11 Score=116.21 Aligned_cols=89 Identities=31% Similarity=0.652 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHHhccc--------------------cchHHHHHHHHHHhCcc
Q 003404 660 TLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEF-INAAYKWE--------------------KHPRKIIEPFILLLAPY 718 (823)
Q Consensus 660 d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~-~~~~~~~~--------------------~~~~~~l~~l~~lLaPi 718 (823)
|+|+++++++++++++++|++|+|+.|++.++.| ++.+++|+ ..+.++++.+++||+||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~ 80 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESREAQYTLYEILKILLILLSPF 80 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHHHHHHHHHHHHHHhhccCCC
Confidence 6789999999999999999999999999999998 46663321 22457899999999999
Q ss_pred chhhHHHHHH-----HcCCCCCccccCCCCCCcccc
Q 003404 719 APHMSEELWF-----RLGHSNSLAYESFPKANPDYL 749 (823)
Q Consensus 719 ~P~~aEelw~-----~L~~~~sv~~~~WP~~~e~~l 749 (823)
|||+|||+|+ .++.+++++.+.||. +....
T Consensus 81 ~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~ 115 (153)
T PF08264_consen 81 MPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFI 115 (153)
T ss_dssp SHHHHHHHHHHCTTHHTTSSSSGGGS------GGGG
T ss_pred CcHHHHHHHHHhhhccCCCCCeeeeCCCCC-Chhhh
Confidence 9999999995 456678999999998 55433
No 68
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.14 E-value=2.5e-10 Score=108.95 Aligned_cols=112 Identities=25% Similarity=0.365 Sum_probs=82.5
Q ss_pred ccccchHHHHHHHHHHHHHHHcCCC--CCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-
Q 003404 619 WNTSGIEGVHRFLGRMWRLIVGSSL--PDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN- 695 (823)
Q Consensus 619 ~s~~~i~~~~~~l~r~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~- 695 (823)
||++++.++++||+++|+++..... ...+............+.+++.+++++++++.++|++|+|++|++.+|++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5788999999999999987632100 1111100000111334677899999999999999999999999999999997
Q ss_pred -HHhc-------ccc------------chHHHHHHHHHHhCccchhhHHHHHHHc
Q 003404 696 -AAYK-------WEK------------HPRKIIEPFILLLAPYAPHMSEELWFRL 730 (823)
Q Consensus 696 -~~~~-------~~~------------~~~~~l~~l~~lLaPi~P~~aEelw~~L 730 (823)
..|. |.. ...++++.++++|+|||||+|+++|+.|
T Consensus 81 ~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 3443 421 1237899999999999999999999875
No 69
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.14 E-value=3.9e-10 Score=106.37 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 622 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 622 ~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
+.+....|++.|+++++..... ..... .......+.++++++++++++++++|++|+|++|++.+++|++.+|++.
T Consensus 4 ~l~~~~gnll~r~~~~~~~~~~--~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~ 79 (129)
T cd07957 4 ELANNLGNLVNRTLNMASKYFG--GVVPE--FGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYI 79 (129)
T ss_pred HHHhhHhhHHHHHHHHHHHHcC--CcCCC--CCCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 3456678899999998854310 11100 0012345789999999999999999999999999999999998877631
Q ss_pred ------------c---------chHHHHHHHHHHhCccchhhHHHHHHHc
Q 003404 702 ------------K---------HPRKIIEPFILLLAPYAPHMSEELWFRL 730 (823)
Q Consensus 702 ------------~---------~~~~~l~~l~~lLaPi~P~~aEelw~~L 730 (823)
. ...++++.++++|+|||||+|||+|+.|
T Consensus 80 ~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 80 DETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred ccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 1 1225678999999999999999999975
No 70
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.07 E-value=9.9e-10 Score=129.16 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=86.8
Q ss_pred ccccccCCCCccChh-----------------------HHHHHhCcchheeeeeecCCccCCccccccchHH--------
Q 003404 578 AHKMSKSRGNVVNPD-----------------------DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG-------- 626 (823)
Q Consensus 578 G~KMSKS~GNvV~p~-----------------------~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~-------- 626 (823)
|.|||||+||+|+|. ++++.+|.|++||++++.. ...+.+|+.+.+..
T Consensus 370 ~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~y 448 (566)
T TIGR00456 370 LGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPY 448 (566)
T ss_pred CCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceecHHHHhccCCCCchh
Confidence 689999999999998 7888899999999999776 68888898765432
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 627 VHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 627 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
+.+...|+.+++...................+.+..++..+.++...+.+++++++++.++..+++++...|++.
T Consensus 449 iqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy 523 (566)
T TIGR00456 449 IQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFY 523 (566)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 222334444444222100000000000011233556778889999999999999999999999999999999864
No 71
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.64 E-value=2.1e-08 Score=115.07 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=48.9
Q ss_pred cccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCccccccchHHHHHHHHHHHHHH
Q 003404 577 RAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI 638 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~~l~r~~~~~ 638 (823)
+|+|||||+||+|++.++++.+|+|++||+++ ...+...++|+.+.+ .++.-..++.+.+
T Consensus 271 ~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l-~~~~~~~ldFd~~~l-~~~dey~r~~~~~ 330 (515)
T TIGR00467 271 KGGKMSSSKGDVISVKDVLEVYTPEITRFLFA-RTKPEFHISFDLDVI-KLYEDYDKFERFY 330 (515)
T ss_pred CCccccCCCCCCccHHHHHHHcCHHHHHHHHh-ccCCCCCCcCCHHHH-HHHHHHHHHHHHH
Confidence 37899999999999999999999999999877 566788899998877 6555444444433
No 72
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.36 E-value=6.7e-07 Score=92.15 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=79.8
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcC
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 80 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~g 80 (823)
+.||+|.+..++|.+|.||+..|.+.+ .+++++...++.+++.+++||+++| .+.+|++. ...++.++.+|.++|
T Consensus 35 ~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~~L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g 109 (212)
T cd00671 35 FLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYGRLDVRFD--VWFGESSY--LGLMGKVVELLEELG 109 (212)
T ss_pred HCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCcCc--eecchhhh--hhHHHHHHHHHHHCC
Confidence 479999999999999999999997764 4899999999999999999999998 66677764 888999999999999
Q ss_pred cEEEcceeeeccCCC
Q 003404 81 LAYQAEVPVNWCPAL 95 (823)
Q Consensus 81 liy~~~~~v~w~p~~ 95 (823)
++|+....+..|+.+
T Consensus 110 ~~~~~~g~~~~~~~~ 124 (212)
T cd00671 110 LLYEEDGALWLDLTE 124 (212)
T ss_pred CEEEeCCcEEEechh
Confidence 999998888777644
No 73
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.27 E-value=3.3e-06 Score=77.63 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCCCCCcc-CCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcc
Q 003404 622 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTV-VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKW 700 (823)
Q Consensus 622 ~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~ 700 (823)
+.+.++.++++++|+.+...........+... ......|.+++.++++++++++++|++|+|++|++.+|+|++.+|.+
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~y 81 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNWY 81 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccHH
Confidence 56788888888888866321000000101000 01133478899999999999999999999999999999999888763
Q ss_pred cc-----------------chHHHHHHHHHHhCccc
Q 003404 701 EK-----------------HPRKIIEPFILLLAPYA 719 (823)
Q Consensus 701 ~~-----------------~~~~~l~~l~~lLaPi~ 719 (823)
.. ...++++.++++|+|||
T Consensus 82 ~~~~~pw~~~~~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 82 LDELKPALQTEELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHhhHHHcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 21 23477899999999996
No 74
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.23 E-value=7.4e-06 Score=96.36 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=82.5
Q ss_pred ccccccCCCCccChhHHHHH-------------------------hCcchheeeeeecCCccCCccccccchH-------
Q 003404 578 AHKMSKSRGNVVNPDDVVTE-------------------------YGADSLRLYEMFMGPFRDSKTWNTSGIE------- 625 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~-------------------------yGaD~lRl~ll~~~~~~~d~~~s~~~i~------- 625 (823)
|+||||-+||+|+.+|+++. -|.|++||++++ .....+.+|+.+.+.
T Consensus 369 g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~-~~~~~~~~Fd~d~~l~~~g~t~ 447 (562)
T PRK12451 369 GKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLK-NERMHNIEFSLENMLKFEGETG 447 (562)
T ss_pred CCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhh-cCCCCCceECHHHHhCcCCCcc
Confidence 67999999999999999996 679999999995 445666778766532
Q ss_pred ----HHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 626 ----GVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 626 ----~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
-++-.+..+++-. .. ...........+.+..++..+..+...+.+++++++++.++..+++++...|+|.
T Consensus 448 pYiQYa~AR~~SIlrka---~~---~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN~fy 521 (562)
T PRK12451 448 PYVQYTHARACSILRKE---SV---EFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFNKYY 521 (562)
T ss_pred HHHHHHHHHHHHHHHhc---CC---CccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 1222222222221 10 1100001111233456788899999999999999999999999999999999864
No 75
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=5.8e-05 Score=88.01 Aligned_cols=120 Identities=17% Similarity=0.139 Sum_probs=84.1
Q ss_pred ccccccCCCCccChhHHHHHhC----------------------cchheeeeeecCCccCCccccccchHH---------
Q 003404 578 AHKMSKSRGNVVNPDDVVTEYG----------------------ADSLRLYEMFMGPFRDSKTWNTSGIEG--------- 626 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~yG----------------------aD~lRl~ll~~~~~~~d~~~s~~~i~~--------- 626 (823)
|.||||-.|++|+.+++++.-+ .|++||++++. ....+.+|+++.+..
T Consensus 381 g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~-~~~~~~~Fd~d~~lsfegNt~pYv 459 (577)
T COG0018 381 GVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSR-SRDKDYVFDWDKALSFEGNTAPYV 459 (577)
T ss_pred CccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhc-CCCCCcEeeHHHHHhccCCCchhH
Confidence 7899999999999999999888 99999999954 456667787655432
Q ss_pred --HHHHHHHHHHHHHcCCCCCCCCCCCc-cCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 627 --VHRFLGRMWRLIVGSSLPDGTFKGGT-VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 627 --~~~~l~r~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
++-.+..+++-.... ........ .......+.+++.+|.++..-+.++.++++.+....-+.++....|+|+
T Consensus 460 QYA~ARi~SIlrka~e~---~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY 534 (577)
T COG0018 460 QYAHARICSILRKAGED---ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFY 534 (577)
T ss_pred HHHHHHHHHHHHhcccc---ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 333333333322110 01111000 0111222566788899999999999999999999999999999999874
No 76
>PLN02286 arginine-tRNA ligase
Probab=97.75 E-value=0.00019 Score=84.71 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=82.3
Q ss_pred ccccccCCCCccChhHHHH-----------------------------HhCcchheeeeeecCCccCCccccccchH---
Q 003404 578 AHKMSKSRGNVVNPDDVVT-----------------------------EYGADSLRLYEMFMGPFRDSKTWNTSGIE--- 625 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~-----------------------------~yGaD~lRl~ll~~~~~~~d~~~s~~~i~--- 625 (823)
|+||||-+||+|+.+|+++ ..|.|++||++++ .....+.+|+.+.+.
T Consensus 376 g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~-~~~~~~~~Fd~d~~l~~~ 454 (576)
T PLN02286 376 GKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLK-NNRLTNYTFSFDQMLDLK 454 (576)
T ss_pred CCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhh-cCCCCCCccCHHHHHhhc
Confidence 7899999999999999999 3578999999995 446667788876632
Q ss_pred --------HHHHHHHHHHHHHHcCCCCCCCCCC-CccCCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 003404 626 --------GVHRFLGRMWRLIVGSSLPDGTFKG-GTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA 696 (823)
Q Consensus 626 --------~~~~~l~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~ 696 (823)
-++..+..+++-... ....... .......+.+..++..+.++...+.++.++++.+....-++++...
T Consensus 455 g~t~pYlQYahAR~~SIlrKa~~---~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA~~ 531 (576)
T PLN02286 455 GNTAVYLLYAHARICSIIRKSGK---DIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEK 531 (576)
T ss_pred CCChHHHHHHHHHHHHHHHhccC---ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 223333333322210 0000100 0011113345567888899999999999999999999999999999
Q ss_pred Hhccc
Q 003404 697 AYKWE 701 (823)
Q Consensus 697 ~~~~~ 701 (823)
.++|+
T Consensus 532 F~~fY 536 (576)
T PLN02286 532 FTKFY 536 (576)
T ss_pred HHHHH
Confidence 88865
No 77
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.53 E-value=6.4e-05 Score=81.84 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=23.1
Q ss_pred ccccccCCCCccChhHHHHHhCcchheeeeeecCCccCCcccccc-chHHHH
Q 003404 578 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTS-GIEGVH 628 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~s~~-~i~~~~ 628 (823)
|+|||||+||+++|.++++-+.+++|||+++... +....+|+.+ .+-.++
T Consensus 280 ~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~-P~~~~~~~~~~~i~~~~ 330 (360)
T PF01921_consen 280 GGKMSSSKGNGITPEEWLEYAPPESLRYLMARTK-PNKAKDFSFDLVIPRLY 330 (360)
T ss_dssp -------------HHHHHTTS-HHHHHHHHHCS--TTS-EEE--STTHHHHH
T ss_pred CcccccCCCCccCHHHHHHhcCHHHHHHHHcccC-CCcceEeccCcchHHHH
Confidence 5699999999999999999999999999888544 4444445544 444333
No 78
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00029 Score=78.98 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=35.5
Q ss_pred ccccccCCCCccChhHHHHHhCcchheeeeeecCCc-cCCcccc
Q 003404 578 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWN 620 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~yGaD~lRl~ll~~~~~-~~d~~~s 620 (823)
|+|||||+||+|++.|+++-+.++.|||+++...|. ..+.+|+
T Consensus 275 ~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~ 318 (521)
T COG1384 275 GGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFD 318 (521)
T ss_pred CcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCcceecCCC
Confidence 699999999999999999999999999998865443 3344444
No 79
>PLN02882 aminoacyl-tRNA ligase
Probab=95.99 E-value=0.005 Score=78.16 Aligned_cols=77 Identities=23% Similarity=0.436 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC-
Q 003404 66 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW- 144 (823)
Q Consensus 66 ~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w- 144 (823)
...-..+...|-++|++.+.....+ .++.|||||.|++-+..+|||++++++.+++++.++.++|
T Consensus 383 ~eA~~~Ii~~Lk~~g~L~~~~~~~H--------------syp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~ 448 (1159)
T PLN02882 383 KDADKDIIAAIKAKGRLVKSGSITH--------------SYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWV 448 (1159)
T ss_pred HHhhHHHHHHHHHCCCccceeeeec--------------CCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEE
Confidence 3445667788888999866433321 2688999999999999999999999999999999999998
Q ss_pred hHHHH-HHHHhhh
Q 003404 145 PESVK-EMQRNWI 156 (823)
Q Consensus 145 p~~v~-~~q~~wi 156 (823)
|+.++ ..-.|||
T Consensus 449 P~~~~~~r~~~wl 461 (1159)
T PLN02882 449 PDYVKEKRFHNWL 461 (1159)
T ss_pred CCcchhhHHHHHH
Confidence 99994 6888998
No 80
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=95.85 E-value=0.0029 Score=70.48 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=21.2
Q ss_pred cc-ccccCCCCccChhHHHHHhCcchhe
Q 003404 578 AH-KMSKSRGNVVNPDDVVTEYGADSLR 604 (823)
Q Consensus 578 G~-KMSKS~GNvV~p~~ii~~yGaD~lR 604 (823)
|+ |||+.+||+|..+++|+.-...+.+
T Consensus 285 gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 285 GKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp BEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 66 9999999999999999965545444
No 81
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.73 E-value=0.011 Score=56.95 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCCCcccccccCCccchHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q 003404 1 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 46 (823)
Q Consensus 1 m~G~~V~~~~GwD~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~ 46 (823)
++|++|.++.|+|.+|.+++..|.+.+..|++++..+++.++++++
T Consensus 32 ~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 32 KLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred HcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999
No 82
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=95.57 E-value=0.011 Score=74.58 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC-C
Q 003404 66 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 144 (823)
Q Consensus 66 ~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~-w 144 (823)
...-..+...|-++|++.+.....+ .++.|||||.|++-+...|||++++++++++++.++.++ .
T Consensus 362 ~eA~~~Ii~~L~~~g~l~~~~~~~h--------------~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~ 427 (975)
T PRK06039 362 KDADKEIIRDLKERGLLFKAETYEH--------------SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWY 427 (975)
T ss_pred HHhhHHHHHHHHhCCCEeeeeeecC--------------CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEE
Confidence 4456678889999999877554321 358899999999999999999999999999999999888 5
Q ss_pred hHHHHH-HHHhhhc
Q 003404 145 PESVKE-MQRNWIG 157 (823)
Q Consensus 145 p~~v~~-~q~~wig 157 (823)
|+.++. .-.+||.
T Consensus 428 P~~~~~~~~~~wl~ 441 (975)
T PRK06039 428 PEHIKDGRFGKWLE 441 (975)
T ss_pred CcccchhhHHHHHh
Confidence 888887 7789983
No 83
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=95.51 E-value=0.015 Score=74.00 Aligned_cols=100 Identities=15% Similarity=0.341 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC-h
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 145 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w-p 145 (823)
..-..+...|-++|++.+.+..++ .++.|||||.|++-+..+|||+++++.++++++..+.++| |
T Consensus 488 dA~~~Ii~~Lk~~g~L~~~e~~~H--------------~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P 553 (1205)
T PTZ00427 488 EADNVIKKKLKNENRLLSNNTIVH--------------SYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIP 553 (1205)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeec--------------cCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeC
Confidence 445567788999999876644321 3688999999999999999999999999999998888887 8
Q ss_pred HHH-HHHHHhhhcccCCeEEEEEeecCCCCCcCcEEEEEcCC
Q 003404 146 ESV-KEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTR 186 (823)
Q Consensus 146 ~~v-~~~q~~wig~s~~~~~~f~~~~~~~~~~~~~l~v~TT~ 186 (823)
+.+ +..-.+||..- -...++ ...-=+..|.||...
T Consensus 554 ~~~~~~r~~~wl~n~----~DWcIS--RqR~WGtPIPvW~~~ 589 (1205)
T PTZ00427 554 AHIKEKKFHNWIKDA----KDWCIS--RNRYWGTPIPIWADE 589 (1205)
T ss_pred chhhHhHHHHHHhcC----ccceee--eccccCccceeEEcC
Confidence 888 57889998321 133332 000014668888753
No 84
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=95.44 E-value=0.015 Score=73.58 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCC--C
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--L 142 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~--l 142 (823)
..+.-..+...|-++|++.+.+.. +-.++.||||+.+++.+...||||+++.|++++++.+++ +
T Consensus 330 ~~ear~~Ii~~L~~~g~l~~~~~~--------------~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~ 395 (1052)
T PRK14900 330 RFEARKEVKRLLAEQGLDRGAKPH--------------VLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT 395 (1052)
T ss_pred HHHHHHHHHHHHHhCCCeecceee--------------eccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc
Confidence 344566788899999998775332 223489999999999999999999999999999999975 5
Q ss_pred C-ChHHHHHHHHhhhc
Q 003404 143 D-WPESVKEMQRNWIG 157 (823)
Q Consensus 143 ~-wp~~v~~~q~~wig 157 (823)
. +|+..+..-.+||.
T Consensus 396 ~~~P~~~~~~~~~wl~ 411 (1052)
T PRK14900 396 RFIPEQWTNTYMAWMR 411 (1052)
T ss_pred EEEChHHHHHHHHHHh
Confidence 5 89999998889994
No 85
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=95.13 E-value=0.025 Score=70.65 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC-Ch
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WP 145 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~-wp 145 (823)
+.-..+...|-++|++...+...+ .++.|||||.+++-+...|||++++++++++++.++.++ +|
T Consensus 381 ~a~~~ii~~L~~~g~l~~~~~~~h--------------~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P 446 (861)
T TIGR00392 381 KANKIIIEQLKDKGLLLKAEKITH--------------SYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVP 446 (861)
T ss_pred HhHHHHHHHHHhCCCeeeeeeEec--------------CCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcEEEC
Confidence 455678888999998765443332 246799999999999999999999999999999999887 89
Q ss_pred HHHHHHHHhhhc
Q 003404 146 ESVKEMQRNWIG 157 (823)
Q Consensus 146 ~~v~~~q~~wig 157 (823)
+..+..-.+||.
T Consensus 447 ~~~~~~~~~~l~ 458 (861)
T TIGR00392 447 EWGEGRFGNWLE 458 (861)
T ss_pred chHHHHHHHHHh
Confidence 999999999984
No 86
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=95.04 E-value=0.023 Score=70.84 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCC--CCC
Q 003404 66 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD 143 (823)
Q Consensus 66 ~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~--~l~ 143 (823)
...-..+...|-++|++.+.+.. +...+.|||||.+++.+...||||+++++++++++.++ .+.
T Consensus 314 ~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~ 379 (861)
T TIGR00422 314 FEARKKIVEDLKEEGLLVKIEPH--------------THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIK 379 (861)
T ss_pred HHhHHHHHHHHHhCCCeeeeeee--------------eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeE
Confidence 44566788899999998755432 22357899999999999999999999999999999987 456
Q ss_pred -ChHHHHHHHHhhhc
Q 003404 144 -WPESVKEMQRNWIG 157 (823)
Q Consensus 144 -wp~~v~~~q~~wig 157 (823)
+|+..+..-.+|+.
T Consensus 380 ~~P~~~~~~~~~wl~ 394 (861)
T TIGR00422 380 FVPKRMEKRYLNWLR 394 (861)
T ss_pred EEChHHHHHHHHHHh
Confidence 69999999999994
No 87
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=94.97 E-value=0.027 Score=70.24 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCC--CC-
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD- 143 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~--l~- 143 (823)
+.-..+...|-++|++...+.. +-..+.|||||.+++.+...||||+++.+++++++.+++ +.
T Consensus 317 ~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~ 382 (874)
T PRK05729 317 EARKAIVADLEELGLLVKIEPH--------------THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKF 382 (874)
T ss_pred HHHHHHHHHHHhCCCeeeeEEe--------------eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEE
Confidence 4456788899999998655432 233588999999999999999999999999999998863 55
Q ss_pred ChHHHHHHHHhhhc
Q 003404 144 WPESVKEMQRNWIG 157 (823)
Q Consensus 144 wp~~v~~~q~~wig 157 (823)
+|+..+..-.+|+.
T Consensus 383 ~P~~~~~~~~~wl~ 396 (874)
T PRK05729 383 VPERWEKTYFHWME 396 (874)
T ss_pred EChHHHHHHHHHHh
Confidence 99999999999993
No 88
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=93.75 E-value=0.083 Score=65.44 Aligned_cols=77 Identities=25% Similarity=0.392 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC-Ch
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WP 145 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~-wp 145 (823)
+.-..+...|-++|++...+...+ ..+.|||||.+++.+...||||+++++++++++.++.++ +|
T Consensus 315 ~a~~~i~~~L~~~g~~~~~~~~~~--------------~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~P 380 (800)
T PRK13208 315 EARKKIVEDLKSGGLLGKQEPIKH--------------NVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYP 380 (800)
T ss_pred HHHHHHHHHHHhCCCeeceeeeec--------------cCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEEC
Confidence 445677888888998765432221 236789999999999999999999999999999999887 89
Q ss_pred HHHHHHHHhhhc
Q 003404 146 ESVKEMQRNWIG 157 (823)
Q Consensus 146 ~~v~~~q~~wig 157 (823)
+..+.+-.+||.
T Consensus 381 ~~~~~~~~~~l~ 392 (800)
T PRK13208 381 EHMRVRLENWIE 392 (800)
T ss_pred HHHHHHHHHHHH
Confidence 999999999993
No 89
>PLN02943 aminoacyl-tRNA ligase
Probab=93.49 E-value=0.084 Score=66.34 Aligned_cols=76 Identities=22% Similarity=0.448 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCC--CC-
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD- 143 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~--l~- 143 (823)
+.-..+-..|-++|++...+.. +...++|||||.+|+.+...|||++++.+++++++.++. +.
T Consensus 367 ear~~iv~~L~~~g~l~~~e~~--------------~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~ 432 (958)
T PLN02943 367 EAREKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTI 432 (958)
T ss_pred HHHHHHHHHHHHCCCeeeeeee--------------ecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEE
Confidence 4445577788899998654332 224589999999999999999999999999999998864 55
Q ss_pred ChHHHHHHHHhhh
Q 003404 144 WPESVKEMQRNWI 156 (823)
Q Consensus 144 wp~~v~~~q~~wi 156 (823)
+|+..+..-.+|+
T Consensus 433 ~P~~~~~~~~~wl 445 (958)
T PLN02943 433 IPERFEKIYNHWL 445 (958)
T ss_pred EChHHHHHHHHHH
Confidence 8999999999998
No 90
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=93.44 E-value=0.055 Score=62.85 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=45.5
Q ss_pred CCCCcccccccCCcc------------------chHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcCccc
Q 003404 1 MQGYNVLHPMGWDAF------------------GLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 53 (823)
Q Consensus 1 m~G~~V~~~~GwD~h------------------GlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~~~D 53 (823)
++|++|.+++|+|+| |.|+-..+...|.+ +.|+..+.+.+++.|.+||+.++
T Consensus 52 ~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~-~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 52 DSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK-TSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred HcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 579999999999999 77776666666765 88999999999999999999887
No 91
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.20 E-value=0.053 Score=66.31 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCCC-h
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 145 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~w-p 145 (823)
..-..|...|.++|++....+..+ .|+.||||..|+.-|...|||+++++..+++++.+++.+| |
T Consensus 375 dAn~~Ii~~Lk~~g~Ll~~e~i~H--------------sYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P 440 (933)
T COG0060 375 DANKKIIEDLKEKGNLLKSEKIEH--------------SYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVP 440 (933)
T ss_pred cCCHHHHHHHHhCCceeeeeeEEe--------------CCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEC
Confidence 445566777777777655443322 3788999999999999999999999999999988888884 7
Q ss_pred HHHHHHHHhhh
Q 003404 146 ESVKEMQRNWI 156 (823)
Q Consensus 146 ~~v~~~q~~wi 156 (823)
+..+..-.|||
T Consensus 441 ~~~~~R~~~mv 451 (933)
T COG0060 441 DWGKNRFGNMV 451 (933)
T ss_pred hhHHHHHHHHH
Confidence 77788888887
No 92
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=93.11 E-value=0.1 Score=65.29 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhh--hHHHhhccCCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE--YADRLLDDLDDL 142 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~--y~~~l~~~l~~l 142 (823)
..+.-..+...|-++|++...+...+ .++.||||+.|++-+...|||+++++ +++++++.++.+
T Consensus 368 v~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v 433 (912)
T PRK05743 368 VFKANPKIIEKLEEKGALLKEEKITH--------------SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKV 433 (912)
T ss_pred HHHhHHHHHHHHHhCCCeeeeeeeec--------------cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHccc
Confidence 34556778888989998766554332 35789999999999999999999998 999999999988
Q ss_pred C-ChHHHHHHHHhhh
Q 003404 143 D-WPESVKEMQRNWI 156 (823)
Q Consensus 143 ~-wp~~v~~~q~~wi 156 (823)
+ -|+..+..-.+||
T Consensus 434 ~~~P~~~~~r~~~~i 448 (912)
T PRK05743 434 KWIPAWGKNRIESMV 448 (912)
T ss_pred EEEChHHHHHHHHHH
Confidence 7 5888888888887
No 93
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.89 E-value=0.14 Score=49.13 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=22.6
Q ss_pred ceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEec
Q 003404 474 VDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILG 521 (823)
Q Consensus 474 ~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~ 521 (823)
.|++++|+||.. |. +.....+...+. ...| ..+..|++++
T Consensus 94 ~~i~~~G~Dq~~-h~---~~~~~i~~~~~~--~~~p--~~~~~~~l~~ 133 (143)
T cd00802 94 CDIHLGGSDQLG-HI---ELGLELLKKAGG--PARP--FGLTFGRVMG 133 (143)
T ss_pred cEEEEechhHHH-HH---HHHHHHHHHhCC--CCCc--eEEEeCCeEC
Confidence 699999999975 42 333334444431 1123 4455677764
No 94
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=92.87 E-value=0.37 Score=60.64 Aligned_cols=131 Identities=21% Similarity=0.194 Sum_probs=81.9
Q ss_pred cccCCccc-hHHHHHHHHhCCCChHHHHHHHHHHHHHHHH----hcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEE
Q 003404 9 PMGWDAFG-LPAEQYAIETGTHPKITTLRNINRFRTQLKS----LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY 83 (823)
Q Consensus 9 ~~GwD~hG-lPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~----lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy 83 (823)
++--|.+| +|++....+.|+..+.=. ...+.-++...+ -|+..+=--.|.= -.-.+.-..+...|-++|++.
T Consensus 343 ii~~~~~g~~~a~~~~~~~~i~~~~d~-~~l~~a~~~~y~~~f~~G~m~~~~~~~~G--~~v~ear~~i~~~L~~~g~~~ 419 (938)
T TIGR00395 343 LIHTDGYGDLPAKEIVEEKGIKSQKDK-NLLEEATKILYKEEYHTGVMIYNIPPYKG--MKVSEAKEKVKADLIDAGLAD 419 (938)
T ss_pred ceecCCCCcccHHHHHHHhcCCCchhh-hHHHHHHHHHhhhhccCceeccCCcccCC--cCHHHhHHHHHHHHHHCCCce
Confidence 33446667 787766677776433210 111222222222 2433220001111 122334556778899999987
Q ss_pred EcceeeeccCCCCcccCccccccCccccCCCCeEEe-ccchhhhhHh--hhHHHhhccCCCCC-ChHHHHHHHHhhhc
Q 003404 84 QAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK-PMRQWMLKIT--EYADRLLDDLDDLD-WPESVKEMQRNWIG 157 (823)
Q Consensus 84 ~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~-~~~qw~~~it--~y~~~l~~~l~~l~-wp~~v~~~q~~wig 157 (823)
+-..+. ....|+|||.+++-+ ...||||+++ .+++++++.++.+. +|+..+..-.+||.
T Consensus 420 ~~~~~~---------------~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~ 482 (938)
T TIGR00395 420 VMYEFS---------------ESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKID 482 (938)
T ss_pred EeeecC---------------CCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHh
Confidence 654331 223467999999887 9999999999 59999999999887 89999999999984
No 95
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.60 E-value=0.17 Score=54.04 Aligned_cols=14 Identities=50% Similarity=0.579 Sum_probs=12.0
Q ss_pred cccccccCCCCccC
Q 003404 577 RAHKMSKSRGNVVN 590 (823)
Q Consensus 577 ~G~KMSKS~GNvV~ 590 (823)
+|+|||||.+|.++
T Consensus 192 ~G~KMSKS~~~~~~ 205 (269)
T cd00805 192 DGGKMSKSEGNAIW 205 (269)
T ss_pred CCCcccCCCCCccc
Confidence 38899999999883
No 96
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=92.37 E-value=0.14 Score=64.79 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCC--CCC
Q 003404 66 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD 143 (823)
Q Consensus 66 ~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~--~l~ 143 (823)
...-..+...|-++|++.+.... +-..+.|||||.+++.+...|||++++++++++++.++ .+.
T Consensus 360 ~~ar~~ii~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~ 425 (995)
T PTZ00419 360 FDCRRKIEEELKEMGLLRDKVPN--------------PMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELK 425 (995)
T ss_pred HHHHHHHHHHHHhcCCEEeeEEe--------------ecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeE
Confidence 34566788889999998765322 22358899999999999999999999999999999987 344
Q ss_pred -ChHHHHHHHHhhhc
Q 003404 144 -WPESVKEMQRNWIG 157 (823)
Q Consensus 144 -wp~~v~~~q~~wig 157 (823)
-|+..+..-.+||.
T Consensus 426 ~~P~~~~~~~~~wl~ 440 (995)
T PTZ00419 426 IIPSSHENVWYHWLE 440 (995)
T ss_pred EEChHHHHHHHHHHh
Confidence 78888888889984
No 97
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=91.88 E-value=0.095 Score=59.35 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=13.9
Q ss_pred cccccccCCCCccChhH
Q 003404 577 RAHKMSKSRGNVVNPDD 593 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ 593 (823)
+|.|||||.||.|+..+
T Consensus 227 dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 227 DGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCccCCCCCCceeccC
Confidence 37899999999887554
No 98
>PLN02381 valyl-tRNA synthetase
Probab=91.56 E-value=0.22 Score=63.26 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccC-----
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDL----- 139 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l----- 139 (823)
....-..+...|-++|++....... ..++.||||+.+++.+-..|||++++..+++.++.+
T Consensus 426 ~~eAr~~Ii~~L~~~g~l~~~~~~~--------------h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~ 491 (1066)
T PLN02381 426 RFAAREAVIEALQKKGLYRGAKNNE--------------MRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGEN 491 (1066)
T ss_pred HHHHHHHHHHHHHhCCCEecceeee--------------cCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccC
Confidence 3445667888999999988664422 236899999999999999999999999999999877
Q ss_pred CCCC-ChHHHHHHHHhhhc
Q 003404 140 DDLD-WPESVKEMQRNWIG 157 (823)
Q Consensus 140 ~~l~-wp~~v~~~q~~wig 157 (823)
+.+. -|+..+..-.+||-
T Consensus 492 ~~i~~~P~~~~~~~~~wl~ 510 (1066)
T PLN02381 492 KKLEFIPKQYLAEWKRWLE 510 (1066)
T ss_pred CceEEEChHHHHHHHHHHh
Confidence 5566 58888888888883
No 99
>PLN02843 isoleucyl-tRNA synthetase
Probab=91.32 E-value=0.22 Score=62.79 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC-ChH
Q 003404 68 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPE 146 (823)
Q Consensus 68 ~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~-wp~ 146 (823)
....+...|-++|++...+... -.++.||||+.|++-+-..|||+++...++++++.++.+. -|+
T Consensus 388 a~~~Ii~~L~~~g~l~~~e~~~--------------H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~ 453 (974)
T PLN02843 388 GNAAVVEALDEAGSLLMEEAYG--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPA 453 (974)
T ss_pred chHHHHHHHHHCCCeeeeeeec--------------CCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEECh
Confidence 3456777888888765433321 1358899999999999999999999999999999999998 588
Q ss_pred HHHHHHHhhh
Q 003404 147 SVKEMQRNWI 156 (823)
Q Consensus 147 ~v~~~q~~wi 156 (823)
..+..-.+||
T Consensus 454 ~~~~r~~~~i 463 (974)
T PLN02843 454 QGENRIRAMV 463 (974)
T ss_pred HHHHHHHHHH
Confidence 7888888888
No 100
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=91.31 E-value=0.24 Score=53.02 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=11.9
Q ss_pred cccccccCCCCccC
Q 003404 577 RAHKMSKSRGNVVN 590 (823)
Q Consensus 577 ~G~KMSKS~GNvV~ 590 (823)
+|.|||||.+|.++
T Consensus 195 ~G~KMSKS~~~~i~ 208 (273)
T cd00395 195 DGPKFGKSESGPKW 208 (273)
T ss_pred CCCcCCCCCCCCcc
Confidence 37899999999874
No 101
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=90.99 E-value=0.42 Score=52.58 Aligned_cols=24 Identities=13% Similarity=-0.098 Sum_probs=16.6
Q ss_pred CCceeeecChhhHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHK 496 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~ 496 (823)
+.+|+...|.||...|.| +|=...
T Consensus 148 ~~~d~VpvG~DQ~qhleL-tRdiA~ 171 (332)
T PRK12556 148 FQATHVPVGKDQIQHIEI-ARDIAT 171 (332)
T ss_pred ccCCEEEeccccHHHHHH-HHHHHH
Confidence 457899999999654544 565533
No 102
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=90.39 E-value=0.27 Score=61.88 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhh-------hHHHhhcc
Q 003404 66 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE-------YADRLLDD 138 (823)
Q Consensus 66 ~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~-------y~~~l~~~ 138 (823)
...-..+...|-++|++...+... -.++.|||||.|++-+...|||+++.. .++++++.
T Consensus 400 ~ea~~~Ii~~L~~~g~l~~~~~~~--------------h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~ 465 (961)
T PRK13804 400 GDANKAVIEKLIEAGLLLARGRLK--------------HSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDA 465 (961)
T ss_pred hhhhHHHHHHHHhCCCccccccee--------------cCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHH
Confidence 355667788888889876544322 135789999999999999999999998 99999999
Q ss_pred CCCCC-ChHHHHHHHHhhhc
Q 003404 139 LDDLD-WPESVKEMQRNWIG 157 (823)
Q Consensus 139 l~~l~-wp~~v~~~q~~wig 157 (823)
++.+. -|+..+..-.+||.
T Consensus 466 i~~v~~~P~~~~~r~~~~i~ 485 (961)
T PRK13804 466 IDKTRFVPAAGQNRLYNMIE 485 (961)
T ss_pred HhccEEECHHHHHHHHHHHh
Confidence 99888 48888888899983
No 103
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=90.34 E-value=0.27 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKVL 498 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~L 498 (823)
+-+|+.++|.||.. |+..+|-....+
T Consensus 148 l~~~~~~~G~DQ~~-~~~l~rd~a~k~ 173 (292)
T PF00579_consen 148 LKADLVPGGIDQRG-HIELARDLARKF 173 (292)
T ss_dssp TTHSEEEEEGGGHH-HHHHHHHHHHHH
T ss_pred eccccccccchHHH-HHHHHHHHHhhh
Confidence 45789999999964 434356554433
No 104
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=90.32 E-value=0.15 Score=61.15 Aligned_cols=78 Identities=27% Similarity=0.518 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCCCCC-C
Q 003404 66 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 144 (823)
Q Consensus 66 ~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~~l~-w 144 (823)
...-..+...|.++|++...+.. +-..+.|||||.+++.+-..|||+++++.++++++.++.++ -
T Consensus 334 ~~ar~~ii~~L~~~g~l~~~~~~--------------~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~ 399 (601)
T PF00133_consen 334 FEAREKIIEDLKEKGLLLKIEEI--------------EHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFY 399 (601)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEE--------------EEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEES
T ss_pred eeccHHHHHHHHHhhhhcccccc--------------ccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEE
Confidence 45677888999999998754332 11235799999999999999999999999999999999888 5
Q ss_pred hHHHHHHHHhhhc
Q 003404 145 PESVKEMQRNWIG 157 (823)
Q Consensus 145 p~~v~~~q~~wig 157 (823)
|+..+..-.+||.
T Consensus 400 P~~~~~~~~~~i~ 412 (601)
T PF00133_consen 400 PESYRKRFENWID 412 (601)
T ss_dssp SSTCHHHHHHHHH
T ss_pred cccchhhhhhhcc
Confidence 8888988999984
No 105
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=89.61 E-value=0.18 Score=59.06 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=40.6
Q ss_pred ccccccCC-------C--------CccChhHHHHH-hCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 578 AHKMSKSR-------G--------NVVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 578 G~KMSKS~-------G--------NvV~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
|.|||||+ | +..+...+..+ |.++++|-|++..|....+..|+.+.+..+.|
T Consensus 336 g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr 403 (567)
T PRK04156 336 GFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINR 403 (567)
T ss_pred CceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 89999998 4 22444555554 89999999999888777888899888887665
No 106
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=88.47 E-value=0.55 Score=58.82 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEecc-chhhhhHh--hhHHHhhccCCC
Q 003404 65 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPM-RQWMLKIT--EYADRLLDDLDD 141 (823)
Q Consensus 65 y~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~-~qw~~~it--~y~~~l~~~l~~ 141 (823)
....-..+...|-++|++.+..... .+..|+|||.+++-+.+ .|||++++ .+.+++++.++.
T Consensus 354 v~eA~~~I~~~L~~~g~~~~~~~~~---------------~~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~ 418 (897)
T PRK12300 354 VREAREKITKDLIEKGIADIMYEFS---------------NRPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDN 418 (897)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecC---------------CCCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHcc
Confidence 3455667888999999987642211 12346699999998875 99999998 799999999999
Q ss_pred CC-ChHHHHHHHHhhhc
Q 003404 142 LD-WPESVKEMQRNWIG 157 (823)
Q Consensus 142 l~-wp~~v~~~q~~wig 157 (823)
++ +|+.++..-.+||.
T Consensus 419 ~~~~P~~~~~~~~~~l~ 435 (897)
T PRK12300 419 MEIIPEEYRKEFENTID 435 (897)
T ss_pred CEEECHHHHHHHHHHHh
Confidence 87 89999988888883
No 107
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.42 E-value=0.8 Score=51.65 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=16.4
Q ss_pred CCceeeecChhhHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHK 496 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~ 496 (823)
+-+|+...|.||. -|+-.+|=...
T Consensus 147 y~ad~VPVG~DQ~-qHlELaRdIA~ 170 (431)
T PRK12284 147 FNAHKVPVGRDQI-QHIEMARDIAQ 170 (431)
T ss_pred cCCCEEEEcchhH-HHHHHHHHHHH
Confidence 3578888999995 45555666633
No 108
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=88.39 E-value=0.33 Score=55.05 Aligned_cols=17 Identities=47% Similarity=0.587 Sum_probs=14.5
Q ss_pred cccccccCCCCccChhH
Q 003404 577 RAHKMSKSRGNVVNPDD 593 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ 593 (823)
+|+|||||.||.|+..+
T Consensus 229 ~G~KMsKS~~naI~L~d 245 (408)
T PRK05912 229 DGKKMGKSEGNAVWLDE 245 (408)
T ss_pred CCCcccCCCCCceeCCC
Confidence 38999999999997665
No 109
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=85.19 E-value=0.87 Score=50.13 Aligned_cols=25 Identities=16% Similarity=0.031 Sum_probs=16.9
Q ss_pred CCceeeecChhhHHHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWHKV 497 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~~~ 497 (823)
+-+|+...|.||...|.| +|=....
T Consensus 138 ~~~d~vpvG~DQ~~h~el-aRdia~r 162 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLEL-TRDLAER 162 (328)
T ss_pred cCCCeeecccccHHHHHH-HHHHHHH
Confidence 358899999999654444 5655443
No 110
>PLN02959 aminoacyl-tRNA ligase
Probab=84.98 E-value=0.92 Score=57.88 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHh--hhHHHhhccCCCCC
Q 003404 66 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKIT--EYADRLLDDLDDLD 143 (823)
Q Consensus 66 ~~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it--~y~~~l~~~l~~l~ 143 (823)
...-..+-..|-++|++..... | +...|+|||.+++-+-..|||++++ ..++..++.++.++
T Consensus 494 ~eAr~~Ii~~L~~~G~l~~~~e-----p-----------~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~ 557 (1084)
T PLN02959 494 QEAKPLIKKKLIEAGQAILYSE-----P-----------EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMN 557 (1084)
T ss_pred HHHHHHHHHHHHhCCCceeeeE-----c-----------CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccE
Confidence 3445567788899997653222 2 1245799999999999999999997 68899999999998
Q ss_pred C-hHHHHHHHHhhhc
Q 003404 144 W-PESVKEMQRNWIG 157 (823)
Q Consensus 144 w-p~~v~~~q~~wig 157 (823)
| |+..+..-.+||.
T Consensus 558 ~~P~~~~~~~~~wl~ 572 (1084)
T PLN02959 558 LYSDETRHGFEHTLG 572 (1084)
T ss_pred EECHHHHHHHHHHHh
Confidence 6 9999988999884
No 111
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.70 E-value=1.3 Score=54.09 Aligned_cols=77 Identities=26% Similarity=0.469 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccchhhhhHhhhHHHhhccCC--CCC-
Q 003404 67 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD- 143 (823)
Q Consensus 67 ~~~~~~F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~qw~~~it~y~~~l~~~l~--~l~- 143 (823)
+.-..+-..|-+.|++.+.+... +.| |+|+|||.++|-.-.+|||++.-..++..++..+ .++
T Consensus 315 eAR~kIv~~L~~~GlLvk~e~~~------------h~V--~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f 380 (877)
T COG0525 315 EARKKIVEDLEEQGLLVKIEPHK------------HSV--GHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380 (877)
T ss_pred HHHHHHHHHHHhCCCeEeeeecc------------ccC--ccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceE
Confidence 34566888999999999876543 233 6899999999999999999999999999998888 566
Q ss_pred ChHHHHHHHHhhhc
Q 003404 144 WPESVKEMQRNWIG 157 (823)
Q Consensus 144 wp~~v~~~q~~wig 157 (823)
-|+....+-.+|+.
T Consensus 381 ~P~~~~~~~~~W~~ 394 (877)
T COG0525 381 VPERMEKRYEDWME 394 (877)
T ss_pred ecHHHHHHHHHHHh
Confidence 78999999999984
No 112
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=83.60 E-value=1.9 Score=44.86 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=26.1
Q ss_pred ccccccCCCCccChhHHHHH-hCcchheeeeeecCC
Q 003404 578 AHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 612 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~~ 612 (823)
|+|||||.|+ ++...+.++ |.+++++-|++..+-
T Consensus 151 g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 151 GTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGW 185 (230)
T ss_pred CCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCC
Confidence 7999999998 456665543 889999999886553
No 113
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.73 E-value=1.5 Score=51.11 Aligned_cols=82 Identities=23% Similarity=0.545 Sum_probs=65.8
Q ss_pred HHHHHHcCcEEEcceeeeccCCCCcccCccccc---------------------------------cCccccCCCCeEEe
Q 003404 73 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV---------------------------------DGVSERGGHPVIRK 119 (823)
Q Consensus 73 F~~L~~~gliy~~~~~v~w~p~~~T~La~~ev~---------------------------------~g~~~~~~~~v~~~ 119 (823)
|....++|+|-++..++ ||.+..-+--+||- +..||||+.|..-|
T Consensus 334 y~~c~~~giI~~d~~~~--cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYr 411 (1070)
T KOG0434|consen 334 YRACVANGIIRKDSLPP--CPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYR 411 (1070)
T ss_pred HHHHHHcCcccCCCCCC--CccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHh
Confidence 45567899999999888 99987776555552 23399999999999
Q ss_pred ccchhhhhHhhhHHHhhccCCCCCC-hHHHH-HHHHhhh
Q 003404 120 PMRQWMLKITEYADRLLDDLDDLDW-PESVK-EMQRNWI 156 (823)
Q Consensus 120 ~~~qw~~~it~y~~~l~~~l~~l~w-p~~v~-~~q~~wi 156 (823)
-+..||+|..+..++|++--+..+| |..|| ..--||+
T Consensus 412 aVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL 450 (1070)
T KOG0434|consen 412 AVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWL 450 (1070)
T ss_pred hccHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHH
Confidence 9999999999999999988777787 55554 3457887
No 114
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=81.45 E-value=1.6 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCceeeecChhhHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWH 495 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~ 495 (823)
+.+|+..+|.||.. |+..+|=..
T Consensus 137 ~~~divpvG~DQ~~-h~elaRdia 159 (333)
T PRK00927 137 YKADLVPVGEDQKQ-HLELTRDIA 159 (333)
T ss_pred cCCCEEeeccchHH-HHHHHHHHH
Confidence 45899999999954 444456553
No 115
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=80.94 E-value=2.1 Score=48.05 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=16.7
Q ss_pred CCceeeecChhhHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFW 494 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw 494 (823)
+.+|+..+|.||...|.| +|=.
T Consensus 209 l~adivpvG~DQ~~~~~L-aRdi 230 (383)
T PTZ00126 209 LKADICQLGMDQRKVNML-AREY 230 (383)
T ss_pred cCCCEEEeCccHHHHHHH-HHHH
Confidence 469999999999766655 5644
No 116
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=80.03 E-value=1.6 Score=48.17 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCceeeecChhhHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFW 494 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw 494 (823)
+.+|+..+|.||.. |+-.+|=.
T Consensus 167 ~~ad~vpvG~DQ~~-h~~l~Rdi 188 (329)
T PRK08560 167 LDVDIAVGGMDQRK-IHMLAREV 188 (329)
T ss_pred hCCCEEEechhHHH-HHHHHHHh
Confidence 46999999999953 33334444
No 117
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=79.32 E-value=1.4 Score=49.39 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.5
Q ss_pred cccccccCCCCccCh
Q 003404 577 RAHKMSKSRGNVVNP 591 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p 591 (823)
+|.|||||.||.|+.
T Consensus 218 dg~KmgKS~~~~i~l 232 (377)
T TIGR00234 218 DGEKMGKSGGGAVSL 232 (377)
T ss_pred CCCCccCCCCCcccC
Confidence 379999999998764
No 118
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=79.06 E-value=2.1 Score=46.08 Aligned_cols=15 Identities=47% Similarity=0.448 Sum_probs=12.4
Q ss_pred cccccCCC-CccChhH
Q 003404 579 HKMSKSRG-NVVNPDD 593 (823)
Q Consensus 579 ~KMSKS~G-NvV~p~~ 593 (823)
.|||||.+ |.|...|
T Consensus 190 ~KMSKS~~~~~I~L~d 205 (280)
T cd00806 190 KKMSKSDPNNAIFLTD 205 (280)
T ss_pred CcccCCCCCCeEEeeC
Confidence 69999998 8886654
No 119
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=78.67 E-value=7 Score=37.96 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=60.8
Q ss_pred HhCcchheeeeeecCCccCCccccccchHHH--------HHHHHHHHHHHHcCCCCCCCCCCCccC---CCCcchHHHHH
Q 003404 597 EYGADSLRLYEMFMGPFRDSKTWNTSGIEGV--------HRFLGRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLC 665 (823)
Q Consensus 597 ~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~--------~~~l~r~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~~~ 665 (823)
..|.|++||++++. ....+.+|+.+.+... .--..|+.+++...... ... ..... ...+.+..++.
T Consensus 2 ~i~~~a~~~~~l~~-~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~-~~~-~~~~~~~ll~~~~E~~L~~ 78 (156)
T cd07956 2 EVGVGAVKYQDLSN-KRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGET-IEA-EADADLSLLPEPDERDLIL 78 (156)
T ss_pred ccchhHHHHHHHhc-CCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCc-Ccc-ccccchhhcCCHHHHHHHH
Confidence 45789999999954 4555667776553211 11223444444221100 000 00010 01223455677
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccc
Q 003404 666 TLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 701 (823)
Q Consensus 666 ~l~~~~~~v~~~~e~~~f~~ai~~l~~~~~~~~~~~ 701 (823)
.+..+...+.+++.+.+++.++..+.++....++|.
T Consensus 79 ~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ff 114 (156)
T cd07956 79 LLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFY 114 (156)
T ss_pred HHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 788888888888989999999999999998888753
No 120
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.31 E-value=1.5 Score=49.16 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=10.9
Q ss_pred CCceeeecChhhH
Q 003404 472 SPVDVYVGGAEHA 484 (823)
Q Consensus 472 ~p~D~~v~G~D~~ 484 (823)
.-+|+-+||.||=
T Consensus 179 L~~dlq~GG~DQ~ 191 (401)
T COG0162 179 LNKDLQLGGSDQW 191 (401)
T ss_pred HccchhcCChHHH
Confidence 4588999999993
No 121
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=76.25 E-value=3.5 Score=45.51 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=16.6
Q ss_pred CCceeeecChhhHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWH 495 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~ 495 (823)
+.+|+..+|.||-..|.| +|=..
T Consensus 141 ~~~d~vpvG~DQ~~h~~l-aRdiA 163 (333)
T PRK12282 141 FKATLVPVGDDQLPMIEQ-TREIV 163 (333)
T ss_pred hCCCEEEeccccHHHHHH-HHHHH
Confidence 478999999999665555 45443
No 122
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.75 E-value=1.8 Score=45.26 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=25.5
Q ss_pred cccccccCCCCccChhHHHH-HhCcchheeeeeecCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 612 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~-~yGaD~lRl~ll~~~~ 612 (823)
+|.||||+.|+ .+...+.+ .+-+.+++-|++..+.
T Consensus 159 ~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~ 194 (239)
T cd00808 159 DGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGW 194 (239)
T ss_pred CCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCC
Confidence 48999999999 45555544 3678888888876543
No 123
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=75.23 E-value=3.3 Score=46.27 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=15.4
Q ss_pred CceeeecChhhHHHHHHHHHHHHHH
Q 003404 473 PVDVYVGGAEHAVLHLLYARFWHKV 497 (823)
Q Consensus 473 p~D~~v~G~D~~~~Hlly~rfw~~~ 497 (823)
-.++...|.||.. |+-.+|=....
T Consensus 203 ~~~lvPvG~DQ~~-h~~ltRdiA~r 226 (368)
T PRK12285 203 KPTLVPVGIDQDP-HIRLTRDIAER 226 (368)
T ss_pred CceEEEeccchHH-HHHHHHHHHHH
Confidence 4678889999964 43335655433
No 124
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=74.83 E-value=4.1 Score=47.18 Aligned_cols=54 Identities=24% Similarity=0.228 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++.......++.+.+.|+.||+.+| +.+|..++ +...=+....+|.++|++|.
T Consensus 43 tD~~R~~~~~~~~i~~~L~wlGl~~d-e~~~~QS~--r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 43 TDLERNIEEAEEAILEGLKWLGISWD-EGPYYQSQ--RLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred CCCccCChHHHHHHHHHHHHCCCCCC-CCeeehhC--CHHHHHHHHHHHHHcCCEEe
Confidence 35666677889999999999999655 24555544 12222456688999999986
No 125
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=74.27 E-value=4.4 Score=45.42 Aligned_cols=17 Identities=41% Similarity=0.563 Sum_probs=13.9
Q ss_pred cccccccCCCCccChhH
Q 003404 577 RAHKMSKSRGNVVNPDD 593 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ 593 (823)
+|+|||||.+|.|...|
T Consensus 261 dg~KMSKS~~n~I~L~D 277 (398)
T PRK12283 261 DGQKMSKSYGNTIGLRE 277 (398)
T ss_pred CCCcCCCCCCCeeeCcC
Confidence 47899999999887544
No 126
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.83 E-value=0.16 Score=61.63 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=61.9
Q ss_pred EEEEcCCcChhhcccEEEECCCCcchhhhccccchHHHHHHHHHHhccChhhhhhhhhcccceecceEEecCCCCC--ee
Q 003404 180 ITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGE--AI 257 (823)
Q Consensus 180 l~v~TT~P~Tl~~~~~i~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~--~~ 257 (823)
....|-+|+|+.|.+..+|+|+.-|.......+... . .-+.... +.-.+..+-.+.++---|||.++ .-
T Consensus 208 ~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~-~-~~~~vft-------tr~dt~~gvt~~~~a~~h~lv~~~~~~ 278 (814)
T COG0495 208 DKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEE-I-VSIEVFT-------TRPDTLFGVTYVVLAPEHPLVGKLVTN 278 (814)
T ss_pred hhhccCCchhHHHHHHcCcCCCCCeEEEEecCCccc-c-eeeeeee-------ccCccccCeEEEEEeCCchHHHHHhcC
Confidence 445566999999999999999988765443211000 0 0000000 00001111123333344777653 22
Q ss_pred c--EEEeCccccCCCCceEEecCCCChhhHHHHH
Q 003404 258 P--IWVADYVLGSYGTGAIMAVPAHDTRDHEFAL 289 (823)
Q Consensus 258 p--i~~~~~V~~~~GTG~V~~~P~h~~~D~~~~~ 289 (823)
| +.+++||....|||.|+.+|+|.+-|+-+-.
T Consensus 279 ~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 279 PQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred ccchhHHHHHHHhcCCCceeeeeccCCCcceecc
Confidence 3 7889999999999999999999999886654
No 127
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.08 E-value=22 Score=40.57 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCcccccccCCccchHHHHHHH--HhCCCChHHHHH---HHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHH
Q 003404 3 GYNVLHPMGWDAFGLPAEQYAI--ETGTHPKITTLR---NINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLL 77 (823)
Q Consensus 3 G~~V~~~~GwD~hGlPiE~~a~--~~g~~p~~~~~~---~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~ 77 (823)
||+|.|+|+.-.--=.|=..|. +.+..|..|... +-+.|.+.|.+|.+.-- ...|--.+|.-.+..+..++.
T Consensus 92 gy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkII 168 (586)
T KOG2007|consen 92 GYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKII 168 (586)
T ss_pred CcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHH
Confidence 8999999998665555544453 245666655544 44889999999999864 677888888888899999999
Q ss_pred HcCcEEEcceeeeccCCC
Q 003404 78 KRGLAYQAEVPVNWCPAL 95 (823)
Q Consensus 78 ~~gliy~~~~~v~w~p~~ 95 (823)
++|++|...-.|++|...
T Consensus 169 dnG~aY~~dGsVYFdv~k 186 (586)
T KOG2007|consen 169 DNGYAYAVDGSVYFDVDK 186 (586)
T ss_pred hCCceeeeCCcEEEeccc
Confidence 999999999999998653
No 128
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.56 E-value=2.9 Score=45.35 Aligned_cols=13 Identities=46% Similarity=0.417 Sum_probs=10.9
Q ss_pred c-cccccCCCC-ccC
Q 003404 578 A-HKMSKSRGN-VVN 590 (823)
Q Consensus 578 G-~KMSKS~GN-vV~ 590 (823)
| .|||||.+| +|.
T Consensus 195 g~~KMSkS~~ns~I~ 209 (314)
T COG0180 195 GPGKMSKSDPNSAIF 209 (314)
T ss_pred CCCcccccCCCCeee
Confidence 5 899999999 554
No 129
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=59.25 E-value=11 Score=38.71 Aligned_cols=9 Identities=44% Similarity=0.527 Sum_probs=7.9
Q ss_pred ccccccCCC
Q 003404 578 AHKMSKSRG 586 (823)
Q Consensus 578 G~KMSKS~G 586 (823)
|.||||..|
T Consensus 204 ~~kmS~R~G 212 (212)
T cd00671 204 EGKMSTRAG 212 (212)
T ss_pred CCCCCCCCC
Confidence 789999986
No 130
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=58.41 E-value=25 Score=40.40 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++++.-....++.+++.|+.||+.+| .. ....+.+...+.+..+|.++|++|+
T Consensus 44 TD~~Rs~~~~~~~I~e~L~wLGI~~D--e~--y~QSer~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 44 TDLERSKQEYADAIAEDLKWLGINWD--RT--FRQSDRFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred CCcccchHHHHHHHHHHHHHcCCCCC--cc--ccHHHHHHHHHHHHHHHHHCCCEEE
Confidence 35666678899999999999999877 43 3344444567888999999999886
No 131
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=57.83 E-value=8.2 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=16.3
Q ss_pred CCceeeecChhhHHHHHHHHHHHH
Q 003404 472 SPVDVYVGGAEHAVLHLLYARFWH 495 (823)
Q Consensus 472 ~p~D~~v~G~D~~~~Hlly~rfw~ 495 (823)
+.+|+..+|.||...|.| +|=+.
T Consensus 174 l~adivpvG~DQ~qh~eL-aRdia 196 (682)
T PTZ00348 174 LKADICQLGLDQRKVNML-AREYC 196 (682)
T ss_pred cCCCEEEeCccHHHHHHH-HHHHH
Confidence 468999999999655544 56443
No 132
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=55.03 E-value=15 Score=42.62 Aligned_cols=53 Identities=26% Similarity=0.229 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCe--------eecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNRE--------ISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~--------~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++...+...++.+.+.|+.||+.+| .. |+.++ +...-+....+|.++|++|.
T Consensus 46 tD~~R~~~~~~~~i~~~L~wlGl~~D--e~p~~~~~gpy~QS~--r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 46 TDQERSTEEAEEAILEGLKWLGLDWD--EGPDGGPYGPYRQSE--RLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCCCCCChHHHHHHHHHHHHCCCCCC--CCCccCCCCceehhc--CHHHHHHHHHHHHHcCCeee
Confidence 35666678889999999999999666 33 44433 33344566778999999886
No 133
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=54.69 E-value=17 Score=29.37 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=22.8
Q ss_pred HHHHHHh-cCcHHHHHHHHHHHHHHHhc
Q 003404 673 KVTEEIE-GTRFNTGISAMMEFINAAYK 699 (823)
Q Consensus 673 ~v~~~~e-~~~f~~ai~~l~~~~~~~~~ 699 (823)
++.++|+ +|++..|++.|++++..+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 4678885 59999999999999999998
No 134
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=53.12 E-value=7.8 Score=38.17 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHcCcEEEcceeeeccCCCCcccCccccccCccccCCCCeEEeccch
Q 003404 77 LKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQ 123 (823)
Q Consensus 77 ~~~gliy~~~~~v~w~p~~~T~La~~ev~~g~~~~~~~~v~~~~~~q 123 (823)
.+++-.+.+..+++||-.|+-.|-.. +|..||..++...++|
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~~~-----~c~~cg~~~~~l~LTp 43 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLLGR-----RCSVCGSKVEELRLTP 43 (202)
T ss_pred CcccceeecccceeehhhCCCccccc-----cccccCCcceEEEeCC
Confidence 46677899999999999998877653 5788888887777665
No 135
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=47.83 E-value=37 Score=36.36 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCe-eecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~-~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++..-.....+.+.+.|+.||+.+| .. |..+ ++...=+....+|.++|++|.
T Consensus 42 tD~~R~~~~~~~~I~~dL~wLGl~wD--e~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 42 LDPPREVPGAADDILRTLEAYGLHWD--GEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred CCCCCCChHHHHHHHHHHHHcCCCCC--CCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 35665667888999999999999766 43 3333 444455667789999999986
No 136
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.19 E-value=32 Score=40.83 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE--cceeeecc
Q 003404 33 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ--AEVPVNWC 92 (823)
Q Consensus 33 ~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~--~~~~v~w~ 92 (823)
.+...++.+++.+.+||+.|| .++.-.+--|...+..+...|-++|++|. |-..|.|+
T Consensus 237 ~v~~~l~~~k~~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~ 296 (577)
T COG0018 237 FVDLSLEGIKETLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLL 296 (577)
T ss_pred HHHHHHHHHHHHHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehh
Confidence 456667788999999999999 44444444444468899999999999999 55556665
No 137
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=41.44 E-value=52 Score=39.16 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEEccee
Q 003404 34 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVP 88 (823)
Q Consensus 34 ~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~~~~~ 88 (823)
+...++.+++.+++||+.|||-. .+..|......+..+|.++|++|+...-
T Consensus 233 ~~~~l~~~~~~~~~l~V~fD~~~----~es~~~~~~~~v~~~L~~~g~~~e~dGa 283 (562)
T PRK12451 233 RHESLKEFSRIYELLGVEFTNFQ----GEAFYNDLMEDFIGILEEHDLLEESEGA 283 (562)
T ss_pred HHHHHHHHHHHHHHcCCCceeec----chHhhhhhHHHHHHHHHHCCCEEecCCe
Confidence 45667888999999999999532 3335666678899999999999976543
No 138
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=39.29 E-value=50 Score=34.64 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=36.9
Q ss_pred CChH--HHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 29 HPKI--TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 29 ~p~~--~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++. ......+.+.+.|+.||+ +|+..+..+ ++...-+....+|.++|++|.
T Consensus 44 D~~r~~~~~~~~~~i~~dL~wLGl--~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 44 DPRTKRPDPEAYDMIPEDLEWLGV--KWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCcccchHHHHHHHHHHHHHcCC--CCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 4555 556667779999999999 666654433 334444556788999999997
No 139
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=38.20 E-value=21 Score=41.55 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred ccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccc
Q 003404 468 ERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEY 547 (823)
Q Consensus 468 ~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~ 547 (823)
.+..+-++-.|-|.||. ---+.-+....++....| ....+.+|++.
T Consensus 191 DD~~m~ithVIRG~d~~-------~~t~~q~~l~~aLG~~~p--~~~H~plv~~~------------------------- 236 (513)
T PRK14895 191 DDHDMGITHIIRGDDHL-------TNAARQLAIYQAFGYAVP--SMTHIPLIHGA------------------------- 236 (513)
T ss_pred HHHhcCCCEEEECchHh-------hhHHHHHHHHHHcCCCCC--eEEEEEeEEcC-------------------------
Q ss_pred cccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHH-hCcchheeeeeecC
Q 003404 548 EQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 611 (823)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~ 611 (823)
+|.||||..|.. ...++.+. |-+++++=|++..|
T Consensus 237 -----------------------------~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG 271 (513)
T PRK14895 237 -----------------------------DGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLG 271 (513)
T ss_pred -----------------------------CCCccccccCch-hHHHHHHCCCCHHHHHHHHHHhC
No 140
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=35.86 E-value=49 Score=39.46 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEEc
Q 003404 34 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 85 (823)
Q Consensus 34 ~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~~ 85 (823)
+...++.+++.+++||+.|| .++.=.+-.|...+..++.+|-++|++|.+
T Consensus 234 ~~~~l~~~~~~~~~l~V~fD--~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~ 283 (566)
T TIGR00456 234 VEYSLEGIKETLARLNIHFD--SFVWEGESVKNGMVPKVLEDLKEKGLVVED 283 (566)
T ss_pred HHHHHHHHHHHHHHcCCcee--eeeccccccccccHHHHHHHHHHCCCEEEc
Confidence 45567889999999999999 222222223444578888999999999976
No 141
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=35.11 E-value=17 Score=42.31 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|..-..+.++.+.+.++.||+.+| ..+.+ .+|...-+....+|.++|++|.
T Consensus 53 TDp~R~~~e~~~~I~~dL~WLGl~wD--~~~~q--Sdr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 53 TNPSKEKAEFEESIIEDLGKIEIKPD--SVSFT--SDYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred CCCCccchHHHHHHHHHHHHhCCCCC--CCccc--cccHHHHHHHHHHHHHcCCeEe
Confidence 46777778899999999999999755 55544 4455566677889999999997
No 142
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=35.07 E-value=50 Score=36.82 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 37 NINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 37 ~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
..+.++++|+++|+.+| ..+.-.+-.|...+..++.+|.++|++|+
T Consensus 147 ~~~~~k~~l~~l~i~fD--v~~~E~Es~~~~~v~~vl~~L~e~g~~~~ 192 (354)
T PF00750_consen 147 ILEWSKETLQRLYIRFD--VWFDESESFYSGKVDEVLERLKEKGLLYE 192 (354)
T ss_dssp HHHHHHHHHHHTT---S--EEEEHCHHHHTTHHHHHHHHHHCTTTEEE
T ss_pred HHHHHHHHHHHHHHHhC--cCcccchhhhhhHHHHHHHHHHhCCcEEe
Confidence 66778889999999999 44444444566678899999999999996
No 143
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=34.71 E-value=37 Score=26.34 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=22.9
Q ss_pred HHHHHh-cCcHHHHHHHHHHHHHHHhcc
Q 003404 674 VTEEIE-GTRFNTGISAMMEFINAAYKW 700 (823)
Q Consensus 674 v~~~~e-~~~f~~ai~~l~~~~~~~~~~ 700 (823)
+.++|+ +++++.|++.+++++..+|+.
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~ 29 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRL 29 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHH
Confidence 567774 599999999999999998864
No 144
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=34.17 E-value=76 Score=37.75 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCC-eeecCChhHHHHHHHHHHHHHHcCcEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAY 83 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~-~~~T~~p~y~~~~~~~F~~L~~~gliy 83 (823)
++|..-..+.++.+.+.++.||+ +|+. .+.+ .+|...-+....+|.++|++|
T Consensus 94 TDp~R~~~e~~d~IleDL~WLGl--~wDe~~~~Q--Sdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 94 TNPSKEKEHFEQAILDDLATLGV--SWDVGPTYS--SDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCCcccCHHHHHHHHHHHHHCCC--CCCCceeec--cccHHHHHHHHHHHHHcCCEE
Confidence 46766678889999999999999 4545 4443 445555667788999999999
No 145
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=33.69 E-value=35 Score=26.71 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHhCCCChHHHHHHHHHHHHHHHHhcC
Q 003404 14 AFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 50 (823)
Q Consensus 14 ~hGlPiE~~a~~~g~~p~~~~~~~i~~~~~~~~~lG~ 50 (823)
.|.||++.+|.+.|+.+-. .|+...++||
T Consensus 13 ~fhlp~~eAA~~Lgv~~T~--------LKr~CR~~GI 41 (52)
T PF02042_consen 13 YFHLPIKEAAKELGVSVTT--------LKRRCRRLGI 41 (52)
T ss_pred HhCCCHHHHHHHhCCCHHH--------HHHHHHHcCC
Confidence 4789999999999986544 5667788887
No 146
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=33.59 E-value=1.6e+02 Score=25.12 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHH-hc
Q 003404 622 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAA-YK 699 (823)
Q Consensus 622 ~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e-~~~f~~ai~~l~~~~~~~-~~ 699 (823)
+.+.++.+.+.|+.+.+.... .. ....+..++.++|+ +++++.|++.+++++..+ +.
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~---------------~~------~~~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD---------------GP------DAEALVARLREALADDLDTPKALAALDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc---------------cc------cHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhc
Confidence 457778888888887763210 00 12346688999995 599999999999999888 54
Q ss_pred c--c-cchHHHHHHHHHHh
Q 003404 700 W--E-KHPRKIIEPFILLL 715 (823)
Q Consensus 700 ~--~-~~~~~~l~~l~~lL 715 (823)
- + ...+..++.+.-+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~ 79 (81)
T cd07955 61 GGTDPDAPALVRTAVDALL 79 (81)
T ss_pred CCCCcccHHHHHHHHHHHc
Confidence 2 2 23455666655544
No 147
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=32.55 E-value=1e+02 Score=36.35 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 29 HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 29 ~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+|+.-.....+.+.+.|+.||+.+| ..+ ...+|.........+|.++|++|.
T Consensus 94 Dp~r~~~e~~~~I~~dL~wLGi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 94 NPETEEQVYIDAIMEMVKWMGWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred CccccChHHHHHHHHHHHHcCCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEEE
Confidence 4555567888999999999998765 444 334555545566679999999997
No 148
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=32.51 E-value=1.1e+02 Score=33.48 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++..-.....+.+.+.|+.||+.+| ..+|..+ ++...-+....+|.++|++|.
T Consensus 43 tD~~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 43 TDPERCRPEFYDAILEDLRWLGLEWD-YGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHT---S-TCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred cccccchhhHHHHHHhheeEEEEecC-CeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 35665567888999999999999888 2444433 344445566779999999986
No 149
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=31.97 E-value=89 Score=36.64 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|..-..+.++.+.+.++.||+.+|- ..+.+++ |...-...-.+|.++|++|.
T Consensus 42 Td~~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~--~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 42 TNPVKEDPEYVESIKRDVEWLGFKWEG-KIRYSSD--YFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCcccCChHHHHHHHHHHHHcCCCCCC-CceEccc--cHHHHHHHHHHHHHcCCEEe
Confidence 357666788999999999999997762 3444433 22222234479999999997
No 150
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=31.90 E-value=99 Score=32.38 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=49.7
Q ss_pred ccccccCCccchHH-----HHHHHHhC---------CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHH
Q 003404 6 VLHPMGWDAFGLPA-----EQYAIETG---------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 71 (823)
Q Consensus 6 V~~~~GwD~hGlPi-----E~~a~~~g---------~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~ 71 (823)
.+-|.|.=+.|--. ...|.+.| ++|..-.....+.+.+.|+.||+.+| ..+.. .++...-+.
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD--~~~~Q--S~r~~~Y~~ 82 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPY--KVTYA--SDYFDQLYE 82 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHHcCCCCC--Cceec--ccCHHHHHH
Confidence 34455555555422 23455443 35666677888999999999999766 54443 333444556
Q ss_pred HHHHHHHcCcEEE
Q 003404 72 IFLQLLKRGLAYQ 84 (823)
Q Consensus 72 ~F~~L~~~gliy~ 84 (823)
...+|.++|++|.
T Consensus 83 ~~~~L~~~g~aY~ 95 (238)
T cd00807 83 YAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHcCCeec
Confidence 7789999999999
No 151
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=31.73 E-value=22 Score=41.50 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=34.1
Q ss_pred ccccccccCCCCc---------------cChhHHHH-HhCcchheeeeeecCCccCCccccccchHHH
Q 003404 576 ARAHKMSKSRGNV---------------VNPDDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGV 627 (823)
Q Consensus 576 ~~G~KMSKS~GNv---------------V~p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~ 627 (823)
.+|.||||+++.. .+...+.+ .|-++|+|=|++..|....+...+...+..+
T Consensus 237 ~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~ 304 (522)
T TIGR00440 237 LEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESC 304 (522)
T ss_pred CCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHH
Confidence 4589999999764 24555555 3889999999998776543332233344443
No 152
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=31.57 E-value=84 Score=34.16 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++..-.....+.+.+.|+.||+.+| ...|..++ +...-+....+|.++|++|.
T Consensus 47 tD~~R~~~~~~~~I~~dL~wlGl~wD-e~~~~QS~--r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 47 IDPPREVPGAADAILADLEWLGLHWD-GPVLYQSQ--RHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred CCCCccchHHHHHHHHHHHHCCCCCC-CCceEeec--cHHHHHHHHHHHHHCCCcee
Confidence 35555567788999999999999655 12444333 34445567789999999885
No 153
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=31.42 E-value=27 Score=36.54 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=34.4
Q ss_pred ccccccccCCCC------cc----Chh----HHHH--HhCcchheeeeeecCCccCCccccccchHHHH
Q 003404 576 ARAHKMSKSRGN------VV----NPD----DVVT--EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH 628 (823)
Q Consensus 576 ~~G~KMSKS~GN------vV----~p~----~ii~--~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~ 628 (823)
.+|+||||+.+- .+ +|. ..+. .|-+++++=|++..|....+..++.+.+....
T Consensus 160 ~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~n 228 (238)
T cd00807 160 LTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACV 228 (238)
T ss_pred CCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Confidence 359999999852 12 121 2222 36688899888877877777777766665443
No 154
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=31.41 E-value=93 Score=36.49 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=18.2
Q ss_pred hCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 598 YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 598 yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
|-++++|-|++..|....+...+.+.+..+.|
T Consensus 280 ~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR 311 (523)
T PLN03233 280 IDIDALKMFMCSQGASRRVVNLDWAKFWAENK 311 (523)
T ss_pred CCHHHHHHHHHHhCCCCCCceecHHHHHHHHH
Confidence 55666666666666555555555555554443
No 155
>PLN02486 aminoacyl-tRNA ligase
Probab=30.75 E-value=21 Score=40.21 Aligned_cols=15 Identities=40% Similarity=0.372 Sum_probs=11.9
Q ss_pred cccccCCCC-ccChhH
Q 003404 579 HKMSKSRGN-VVNPDD 593 (823)
Q Consensus 579 ~KMSKS~GN-vV~p~~ 593 (823)
.|||||.+| .|...|
T Consensus 264 ~KMSkS~~nsaI~L~D 279 (383)
T PLN02486 264 GKMSASDPNSAIYVTD 279 (383)
T ss_pred CcCcCcCCCCeeeccC
Confidence 699999987 576654
No 156
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=30.15 E-value=36 Score=38.93 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+++........+.+.+.|+.||+.+| ..|..++ +-..=+....+|.++|.+|.
T Consensus 41 TD~~R~~~e~~~~I~~~L~WlGl~wD--e~y~QSe--R~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 41 TDKERNIEGKDKEILEILNLFGISWD--KLVYQSE--NLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCCC--CCeehhc--cHHHHHHHHHHHHHcCCeee
Confidence 35666678889999999999999665 6665544 22233447788999999886
No 157
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=29.66 E-value=96 Score=36.57 Aligned_cols=52 Identities=21% Similarity=0.476 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCC--hhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~--p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|..-..+.++.+.+.|+.||+.+|- ..+.+++ +.||+.. .+|.++|++|.
T Consensus 71 Td~~r~~~e~~~~I~~dL~wLGi~~d~-~~~~qS~r~~~~y~~a----~~Li~~G~AY~ 124 (554)
T PRK05347 71 TNPEKEDQEYVDSIKEDVRWLGFDWSG-ELRYASDYFDQLYEYA----VELIKKGKAYV 124 (554)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCCCC-CceeeecCHHHHHHHH----HHHHHcCCEee
Confidence 367767788999999999999998763 4454443 3344433 59999999997
No 158
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=29.28 E-value=99 Score=35.94 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=24.7
Q ss_pred ccccccCCCCccChhHHHHH-hCcchheeeeeec
Q 003404 578 AHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFM 610 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~ 610 (823)
|.||||.+| .++..++++. |-+.+++-|++..
T Consensus 239 g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~l 271 (470)
T TIGR00464 239 GKKLSKRDG-ATSIMQFKEQGYLPEALINYLALL 271 (470)
T ss_pred CccccccCC-CccHHHHHHCCCCHHHHHHHHHHc
Confidence 799999999 8888888886 3566666666543
No 159
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=28.32 E-value=1.2e+02 Score=34.84 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=26.3
Q ss_pred cccccccCCCCccChhHHHH-HhCcchheeeeeecCC
Q 003404 577 RAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 612 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~-~yGaD~lRl~ll~~~~ 612 (823)
+|+||||..|. ++..++.+ .|-+++++=|++..+.
T Consensus 232 ~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~ 267 (433)
T PRK12410 232 EGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGN 267 (433)
T ss_pred CCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCC
Confidence 38999999885 35555555 3788999999887664
No 160
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=28.26 E-value=41 Score=38.59 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=26.6
Q ss_pred ccccccCCCCccChhHHHH-HhCcchheeeeeecCC
Q 003404 578 AHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 612 (823)
Q Consensus 578 G~KMSKS~GNvV~p~~ii~-~yGaD~lRl~ll~~~~ 612 (823)
|+|+||..|. ++..++.+ .|-+++++=|++..|-
T Consensus 238 g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~ 272 (445)
T PRK12558 238 GKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGT 272 (445)
T ss_pred cccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcC
Confidence 8999999876 46666665 4889999999886653
No 161
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=27.90 E-value=29 Score=40.82 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=39.0
Q ss_pred ccccccccCCCC------cc---------ChhHHHHH-hCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 576 ARAHKMSKSRGN------VV---------NPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 576 ~~G~KMSKS~GN------vV---------~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
.+|.||||+++. .| +...+.++ |-++|+|=|++..|....+..++.+.+..+.|
T Consensus 266 ~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nR 335 (554)
T PRK05347 266 LTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIR 335 (554)
T ss_pred CCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHH
Confidence 358999999964 22 34455443 88999999999888776666677777766554
No 162
>PLN02859 glutamine-tRNA ligase
Probab=26.16 E-value=1.6e+02 Score=36.33 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 29 HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 29 ~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
+|..-..+.++.+.+.++.||+ +|+..+.+++ |.......-.+|.++|++|.
T Consensus 307 dp~r~~~e~~~~I~edL~WLG~--~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 307 NPEAEKKEYIDHIEEIVEWMGW--EPFKITYTSD--YFQELYELAVELIRRGHAYV 358 (788)
T ss_pred CCCccchHHHHHHHHHHHHcCC--CCCCcccccH--hHHHHHHHHHHHHHcCCeEe
Confidence 4666677889999999999995 5667665543 22212223467999999997
No 163
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=25.54 E-value=1.5e+02 Score=34.48 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=49.3
Q ss_pred cccccCCccchHHH-----HHHHHhC---------CCChHHHHHHHHHHHHHHHHhcCcccCCC-eeecCChhHHHHHHH
Q 003404 7 LHPMGWDAFGLPAE-----QYAIETG---------THPKITTLRNINRFRTQLKSLGFSYDWNR-EISTIEPAYYKWTQW 71 (823)
Q Consensus 7 ~~~~GwD~hGlPiE-----~~a~~~g---------~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~-~~~T~~p~y~~~~~~ 71 (823)
+-|.|.=+.|---- ..|.+.| ++|+.-+....+.+.+.|+.||+..| . .|..+ ++...-+.
T Consensus 16 PsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDTD~~R~~~e~~~~I~~~L~WLGl~wd--e~~~~QS--~r~~~Y~~ 91 (472)
T COG0008 16 PSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDTDPERETPEAEDAILEDLEWLGLDWD--EGPYYQS--ERFDIYYE 91 (472)
T ss_pred cCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCCC--Cceeehh--hhHHHHHH
Confidence 34556666665431 1355543 46777788889999999999998776 5 34443 33344445
Q ss_pred HHHHHHHcCcEEE
Q 003404 72 IFLQLLKRGLAYQ 84 (823)
Q Consensus 72 ~F~~L~~~gliy~ 84 (823)
.-.+|.++|++|.
T Consensus 92 ~~~~Li~~G~AY~ 104 (472)
T COG0008 92 YAEKLIEKGKAYV 104 (472)
T ss_pred HHHHHHHCCCeEE
Confidence 6678999999986
No 164
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=24.87 E-value=99 Score=38.10 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|..-..+.++.+.+.++.||+.+|. ..|.+ .+|...-+....+|.++|++|.
T Consensus 73 Td~~r~~~e~~~~I~~dl~wLG~~wd~-~~~~q--S~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 73 TNPETEDTEYVEAIKDDVRWLGFDWGE-HLYYA--SDYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCCCC-CceEe--ecCHHHHHHHHHHHHHcCCccc
Confidence 357666788899999999999997763 22443 3444445556778999999996
No 165
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=24.38 E-value=1.3e+02 Score=35.13 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.0
Q ss_pred cccccccCCCCccChhHHHHH-hCcchheeeeeecC
Q 003404 577 RAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 611 (823)
Q Consensus 577 ~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~ 611 (823)
+|.||||..| .++..++.+. |-+.+++-|++..|
T Consensus 248 ~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG 282 (476)
T PRK01406 248 DGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLG 282 (476)
T ss_pred CCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhC
Confidence 3899999999 7899998886 56778887776543
No 166
>PLN02627 glutamyl-tRNA synthetase
Probab=22.94 E-value=66 Score=37.75 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred ccccCCceeeecChhhHHHHHHHHHHHHHHHHHhcCccCCCccccccccceEeccceeeEEecCCCccccCCCCCccccc
Q 003404 468 ERYWSPVDVYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFKCVINQGIILGEMQYMVCKDVDGSYISADSTDTLGEY 547 (823)
Q Consensus 468 ~~~w~p~D~~v~G~D~~~~Hlly~rfw~~~L~~~~~~~~~~Pf~~l~~~G~vl~~~~~~~~~d~~g~~~~~~~~~~~~~~ 547 (823)
.+..|-+.-.+=|.||. ---++-+.-..++....| ....+.++++.
T Consensus 244 DD~~mgITHViRG~D~l-------~nTpkQi~ly~aLg~~~P--~f~Hlpli~~~------------------------- 289 (535)
T PLN02627 244 DDATMGITHVIRAEEHL-------PNTLRQALIYKALGFPMP--RFAHVSLILAP------------------------- 289 (535)
T ss_pred cccccCCcEEEechhhh-------cChHHHHHHHHHcCCCCC--eEEEccceeCC-------------------------
Q ss_pred cccccchhhhcccCCceeeccCcchhccccccccccCCCCccChhHHHHH-hCcchheeeeeecC--CccCCccccccch
Q 003404 548 EQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG--PFRDSKTWNTSGI 624 (823)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~KMSKS~GNvV~p~~ii~~-yGaD~lRl~ll~~~--~~~~d~~~s~~~i 624 (823)
+|+||||..|.+ +..++.+. |-+++++=|++..| +..+.-.|+.+.+
T Consensus 290 -----------------------------~g~KLSKR~~~~-~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~el 339 (535)
T PLN02627 290 -----------------------------DRSKLSKRHGAT-SVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEEL 339 (535)
T ss_pred -----------------------------CCCccccccCCc-cHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHH
Q ss_pred HH
Q 003404 625 EG 626 (823)
Q Consensus 625 ~~ 626 (823)
..
T Consensus 340 i~ 341 (535)
T PLN02627 340 VE 341 (535)
T ss_pred HH
No 167
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=22.92 E-value=34 Score=35.87 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=30.5
Q ss_pred cccccccCCCC------cc----Ch-----hHHHH-HhCcchheeeeeecCCccCCccccccchHHH
Q 003404 577 RAHKMSKSRGN------VV----NP-----DDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGV 627 (823)
Q Consensus 577 ~G~KMSKS~GN------vV----~p-----~~ii~-~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~ 627 (823)
+|+||||+.+. .| +| ..+.+ .|-+++++-|++..|-...+..++.+.+...
T Consensus 163 ~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~ 229 (240)
T cd09287 163 EGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAI 229 (240)
T ss_pred CCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHH
Confidence 48999999842 11 22 22222 3667888888777666555555665555443
No 168
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=22.49 E-value=29 Score=40.87 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=39.9
Q ss_pred cccccccccCCCCc---------------cChhHHHH-HhCcchheeeeeecCCccCCccccccchHHHHH
Q 003404 575 IARAHKMSKSRGNV---------------VNPDDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 629 (823)
Q Consensus 575 ~~~G~KMSKS~GNv---------------V~p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~s~~~i~~~~~ 629 (823)
...|.||||++... .+...+.. .|-++++|=|++..|....+...+.+.+..+.|
T Consensus 281 n~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR 351 (574)
T PTZ00437 281 NVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLR 351 (574)
T ss_pred cCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHH
Confidence 34589999999874 23333333 388999999999888877777777777776655
No 169
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=22.23 E-value=1.3e+02 Score=35.73 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=38.7
Q ss_pred CCC--hHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THP--KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p--~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++| ........+.+.+.++.||+ +|+..+.++ +|...-+....+|.++|++|.
T Consensus 143 TDpk~~R~~~e~~~~I~edL~wLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 143 TDPRTKRPDPEAYDMILEDLKWLGV--KWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred CCCCcccchHHHHHHHHHHHHHcCC--CCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 356 44566777889999999999 665665443 445555667788999999985
No 170
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=21.82 E-value=1.2e+02 Score=35.83 Aligned_cols=53 Identities=19% Similarity=0.168 Sum_probs=40.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|..-..+.++.+.+.++.||+.+| ..+ ...+|...-+....+|.++|++|.
T Consensus 135 TDp~R~~~e~~~~I~edL~wLGi~~d--~~~--~qSd~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 135 TDPRRVKPEAYDMILEDLDWLGVKGD--EVV--YQSDRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred CCcccccHHHHHHHHHHHHHcCCCCC--ccc--cccccHHHHHHHHHHHHHcCCcee
Confidence 35665567789999999999999854 544 445566666777889999999997
No 171
>PLN02907 glutamate-tRNA ligase
Probab=20.73 E-value=1.7e+02 Score=35.91 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCcccCCCeeecCChhHHHHHHHHHHHHHHcCcEEE
Q 003404 28 THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 84 (823)
Q Consensus 28 ~~p~~~~~~~i~~~~~~~~~lG~~~Dw~~~~~T~~p~y~~~~~~~F~~L~~~gliy~ 84 (823)
++|..-..+.++.+.+.++.||+.+| ..+.+ .+|...-+....+|.++|++|.
T Consensus 255 Tdp~r~~~e~~~~I~~dl~wLG~~~d--~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 255 TNPSKESDEFVENILKDIETLGIKYD--AVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred CCCCcCChHHHHHHHHHHHHcCCCCC--Ccccc--cccHHHHHHHHHHHHHcCCeee
Confidence 36766778899999999999999766 65544 4455555677889999999997
No 172
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=20.06 E-value=1.5e+02 Score=28.54 Aligned_cols=63 Identities=8% Similarity=0.130 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhcc
Q 003404 622 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYKW 700 (823)
Q Consensus 622 ~~i~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~v~~~~e-~~~f~~ai~~l~~~~~~~~~~ 700 (823)
+.++.+.+.+.|+.+++.... ... .. ...+..+..++.++|+ +|+++.|++.|++++..+|..
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-----~~~-------~~----~~~~~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~ 65 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-----PTT-------VD----IDWGEPFAERFIAAMDDDFNTPEALAVLFELAREINRL 65 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-----hcc-------cc----hhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 457778888888877764210 000 00 1123445688999995 599999999999999988864
Done!